Psyllid ID: psy10738
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | 2.2.26 [Sep-21-2011] | |||||||
| P81274 | 684 | G-protein-signaling modul | yes | N/A | 0.911 | 0.811 | 0.534 | 0.0 | |
| Q8VDU0 | 679 | G-protein-signaling modul | yes | N/A | 0.909 | 0.815 | 0.525 | 0.0 | |
| Q9R080 | 673 | G-protein-signaling modul | no | N/A | 0.909 | 0.823 | 0.497 | 1e-170 | |
| Q6IR34 | 673 | G-protein-signaling modul | no | N/A | 0.911 | 0.824 | 0.496 | 1e-169 | |
| Q86YR5 | 675 | G-protein-signaling modul | no | N/A | 0.909 | 0.820 | 0.494 | 1e-164 | |
| Q96AY4 | 2481 | Tetratricopeptide repeat | no | N/A | 0.543 | 0.133 | 0.333 | 2e-48 | |
| Q80XJ3 | 1691 | Tetratricopeptide repeat | no | N/A | 0.459 | 0.165 | 0.316 | 9e-34 | |
| A9JR78 | 1427 | Tonsoku-like protein OS=D | no | N/A | 0.466 | 0.199 | 0.239 | 4e-13 | |
| A2A3L6 | 582 | Tetratricopeptide repeat | no | N/A | 0.451 | 0.472 | 0.250 | 2e-08 | |
| Q8BYG0 | 334 | Tetratricopeptide repeat | no | N/A | 0.213 | 0.389 | 0.308 | 4e-08 |
| >sp|P81274|GPSM2_HUMAN G-protein-signaling modulator 2 OS=Homo sapiens GN=GPSM2 PE=1 SV=3 | Back alignment and function desciption |
|---|
Score = 660 bits (1704), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 342/640 (53%), Positives = 446/640 (69%), Gaps = 85/640 (13%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ +YE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM--STND 379
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+ STN+
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 380 LSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPEN--------------- 424
I+S N +P G RR SME ++L+KLTPE
Sbjct: 384 SIMSENTEIDSSLNGVRPKLG-------RRHSMENMELMKLTPEKVQNWNSEILAKQKPL 436
Query: 425 --------------KGKQSGSSNSSEL-----SKCDE---------------EESFFELL 450
KGK+ +++S+++ + D +E FF+LL
Sbjct: 437 IAKPSAKLLFVNRLKGKKYKTNSSTKVLQDASNSIDHRIPNSQRKISADTIGDEGFFDLL 496
Query: 451 SRFQSERMDDQRCSLSARQSENKENLQRITNTKKSQPSAP--RATTIPAHTPGDDDLLDM 508
SRFQS RMDDQRC L ++N + T S P + +++P +P D+ LD+
Sbjct: 497 SRFQSNRMDDQRCCLQ------EKNCHTASTTTSSTPPKMMLKTSSVPVVSPNTDEFLDL 550
Query: 509 IVGLQSKRMDEQRAA----------------LPHLADRENAIPDDGFLDMLIRCQGARLE 552
+ QS+R+D+QRA+ L HL +N D+ F D+L++CQG+RL+
Sbjct: 551 LASSQSRRLDDQRASFSNLPGLRLTQNSQSVLSHLMTNDNKEADEDFFDILVKCQGSRLD 610
Query: 553 DQRSHLP---QEGSTVPDEDFFSLITRLQSGRMEDQRATV 589
DQR P +G TVPDEDFFSLI R Q RM++QR +
Sbjct: 611 DQRCAPPPATTKGPTVPDEDFFSLILRSQGKRMDEQRVLL 650
|
Plays an important role in spindle pole orientation. Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions. Homo sapiens (taxid: 9606) |
| >sp|Q8VDU0|GPSM2_MOUSE G-protein-signaling modulator 2 OS=Mus musculus GN=Gpsm2 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 647 bits (1668), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 337/641 (52%), Positives = 436/641 (68%), Gaps = 87/641 (13%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---TN 378
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S N
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPEN-------------- 424
+ +++++ S A RR SME L+L+KLTPE
Sbjct: 384 SMMSENIEIDGSLHGAGAKLG--------RRHSMENLELMKLTPEKVPNWNSEILAKQKP 435
Query: 425 ---------------KGK--QSGSSNSSEL-------------------SKCDEEESFFE 448
KGK +SGS+ + L S +E FF+
Sbjct: 436 LIAKPSAKLLFVNRLKGKKYKSGSACTKVLQDASNSVDHRAPRSQKKISSDTIGDEGFFD 495
Query: 449 LLSRFQSERMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDM 508
LL RFQS RMDDQRC L T + P +A ++ +P D+ LD+
Sbjct: 496 LLRRFQSNRMDDQRCHLQGNCRTTS------TAAASATPKLMKAPSVSVVSPNTDEFLDL 549
Query: 509 IVGLQSKRMDEQRAA-----------------LPHLADRENAIPDDGFLDMLIRCQGARL 551
+ QS+R+D+QRA+ L L + PD+ F D+L++CQG+RL
Sbjct: 550 LASSQSRRLDDQRASFSNLPGLRLTKGNSPSVLERLMTNDKKEPDEDFFDILVKCQGSRL 609
Query: 552 EDQRSHLPQ---EGSTVPDEDFFSLITRLQSGRMEDQRATV 589
+DQR P +G TVPDEDFFSLI R Q+ RM++QR +
Sbjct: 610 DDQRCAPPSAATKGPTVPDEDFFSLILRSQAKRMDEQRVLL 650
|
Plays an important role in spindle pole orientation (By similarity). Interacts and contributes to the functional activity of G(i) alpha proteins. Acts to stabilize the apical complex during neuroblast divisions. Mus musculus (taxid: 10090) |
| >sp|Q9R080|GPSM1_RAT G-protein-signaling modulator 1 OS=Rattus norvegicus GN=Gpsm1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 598 bits (1541), Expect = e-170, Method: Compositional matrix adjust.
Identities = 317/637 (49%), Positives = 417/637 (65%), Gaps = 83/637 (13%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCKAGD +AGVAFF+AA+Q GT+DL+TLSAIYSQLGNAYFYL +Y +A+Q
Sbjct: 28 CLELALEGERLCKAGDFKAGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYARALQ 87
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
+HK DL LAR + D++GEAK+SGNLGNTLKV+G++DEA+VCC+RHL+I+++ DK+ E R
Sbjct: 88 FHKHDLLLARTIGDRMGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEAR 147
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYN+GNVYHAKGK + QDPG P +V+ L A ++YE+NL+L+KE+ D AAQGR
Sbjct: 148 ALYNIGNVYHAKGKQLSWNAAQDPGHLPPDVRETLHRASEFYERNLSLVKELGDRAAQGR 207
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF +A +H+ERL IA+EFGDKAAERRA SNLGN+HIFLG + A+E
Sbjct: 208 AYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAE 267
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
HYK+TL L++ + D+AVEAQACYSLGNTYTLL+DY A +YHLRHL+IAQ+L DRVGEGR
Sbjct: 268 HYKKTLQLSRQIRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEGR 327
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381
ACWSLGNA+ + G+ +AL FA KHL+IS+++GD G++TA+MN+ L+ ALG T+ +
Sbjct: 328 ACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTSPAA 387
Query: 382 PDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLT-------------------- 421
+ L A +P R +R S E DL++L
Sbjct: 388 AEKPDLAGYEAQGARP-------KRTQRLSAETWDLLRLPLDREQNGETHHTGDWRGPSR 440
Query: 422 ---------------PENKGKQSGSSNSSELSKCD----------------EEESFFELL 450
P+ ++ + S L D +EE FF+LL
Sbjct: 441 DSLPLPMRSRKYQEGPDAIERRPREGSHSPLDSADVRVQVPRTGIPRAPSSDEECFFDLL 500
Query: 451 SRFQSERMDDQRCSLSARQSENKENLQRIT-NTKKSQPSAPRATTIPAHTPGDDDLLDMI 509
S+FQS RMDDQRC L Q+ E T + +QPS +P ++ D+I
Sbjct: 501 SKFQSSRMDDQRCPLEEGQAGAAEATAAPTLEERAAQPSV-------TASPQTEEFFDLI 553
Query: 510 VGLQSKRMDEQRA---ALPHL-----------ADRENAIPDDGFLDMLIRCQGARLEDQR 555
QS+R+D+QRA +LP L D + P D F +MLI+ Q +R++DQR
Sbjct: 554 ASSQSRRLDDQRASVGSLPGLRITLNNVGHLRGDGDPQEPGDEFFNMLIKYQSSRIDDQR 613
Query: 556 SHLPQ---EGSTVPDEDFFSLITRLQSGRMEDQRATV 589
P G T+PDEDFFSLI R+Q+ RM++QR +
Sbjct: 614 CPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDL 650
|
Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction. Rattus norvegicus (taxid: 10116) |
| >sp|Q6IR34|GPSM1_MOUSE G-protein-signaling modulator 1 OS=Mus musculus GN=Gpsm1 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 595 bits (1535), Expect = e-169, Method: Compositional matrix adjust.
Identities = 316/636 (49%), Positives = 417/636 (65%), Gaps = 81/636 (12%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCKAGD +AGVAFF+AA+Q GT+DL+TLSAIYSQLGNAYFYL +Y +A+Q
Sbjct: 28 CLELALEGERLCKAGDFKAGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYARALQ 87
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
+HK DL LAR + D++GEAK+SGNLGNTLKV+G++DEA+VCC+RHL+I+++ DK+ E R
Sbjct: 88 FHKHDLLLARTIGDRMGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIAQEQGDKVGEAR 147
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYN+GNVYHAKGK + QDPG P +V+ L A ++YE+NL+L+KE+ D AAQGR
Sbjct: 148 ALYNIGNVYHAKGKQLSWNAAQDPGHLPPDVRETLHRASEFYERNLSLVKELGDRAAQGR 207
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF +A +H+ERL IA+EFGDKAAERRA SNLGN+HIFLG + A+E
Sbjct: 208 AYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDVAAE 267
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
HYK+TL L++ L D+AVEAQACYSLGNTYTLL+DY A +YHLRHL+IAQ+L DRVGEGR
Sbjct: 268 HYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLVIAQELADRVGEGR 327
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381
ACWSLGNA+ + G+ +AL FA KHL+IS+++GD G++TA+MN+ L+ ALG T+ +
Sbjct: 328 ACWSLGNAYVSMGSPAQALTFAKKHLQISQEIGDRNGELTARMNIAHLQLALGRLTSPAA 387
Query: 382 PDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLT-------------------- 421
+ L A +P R +R S E DL++L
Sbjct: 388 AEKPDLAGYEAQGARP-------KRTQRLSAETWDLLRLPLDREQNGETHHTGDWRGPGR 440
Query: 422 ---------------PENKGKQSGSSNSSELSKCD----------------EEESFFELL 450
P+ ++ + S L D +EE FF+LL
Sbjct: 441 DSLPLPMRSRKYQEGPDAIERRPREGSHSPLDSADVRVQVPRTGIPRAPSSDEECFFDLL 500
Query: 451 SRFQSERMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIV 510
S+FQS RMDDQRC L Q+ E + ++ S+ A +P ++ D+I
Sbjct: 501 SKFQSSRMDDQRCPLEEGQAGAAEATAAPSVEDRAAQSSVTA------SPQTEEFFDLIA 554
Query: 511 GLQSKRMDEQRA---ALPHL-----------ADRENAIPDDGFLDMLIRCQGARLEDQRS 556
QS+R+D+QRA +LP L D + P D F +MLI+ Q +R++DQR
Sbjct: 555 SSQSRRLDDQRASVGSLPGLRITLNNVGHLRGDGDAQEPGDEFFNMLIKYQSSRIDDQRC 614
Query: 557 HLPQ---EGSTVPDEDFFSLITRLQSGRMEDQRATV 589
P G T+PDEDFFSLI R+Q+ RM++QR +
Sbjct: 615 PPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDL 650
|
Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction. Mus musculus (taxid: 10090) |
| >sp|Q86YR5|GPSM1_HUMAN G-protein-signaling modulator 1 OS=Homo sapiens GN=GPSM1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 579 bits (1492), Expect = e-164, Method: Compositional matrix adjust.
Identities = 316/639 (49%), Positives = 413/639 (64%), Gaps = 85/639 (13%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCKAGD + GVAFF+AA+Q GT+DL+TLSAIYSQLGNAYFYL ++ +A++
Sbjct: 28 CLELALEGERLCKAGDFKTGVAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEHGRALE 87
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YHK DL LAR + D++GEAK+SGNLGNTLKV+G++DEA VCC+RHL I+++ DK+ E R
Sbjct: 88 YHKHDLLLARTIGDRMGEAKASGNLGNTLKVLGRFDEAAVCCQRHLSIAQEQGDKVGEAR 147
Query: 142 ALYNLGNVYHAKGKAI---GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198
ALYN+GNVYHAKGK + QDPG P +V+ L +A ++YE+NL+L+KE+ D AA
Sbjct: 148 ALYNIGNVYHAKGKQLSWNAANATQDPGHLPPDVRETLCKASEFYERNLSLVKELGDRAA 207
Query: 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258
QGRA GNLGNT+YLLGNF +A +H+ERL IA+EFGDKAAERRA SNLGN+H+FLG +
Sbjct: 208 QGRAYGNLGNTHYLLGNFTEATTFHKERLAIAKEFGDKAAERRAYSNLGNAHVFLGRFDV 267
Query: 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318
A+E+YK+TL L++ L D+AVEAQACYSLGNTYTLL+DY A +YHLRHL+IAQ+L DRVG
Sbjct: 268 AAEYYKKTLQLSRQLRDQAVEAQACYSLGNTYTLLQDYERAAEYHLRHLLIAQELADRVG 327
Query: 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378
EGRACWSLGNA+ + G +AL FA KHL+IS+++GD G++TA+MNV L+ LG T+
Sbjct: 328 EGRACWSLGNAYVSMGRPAQALTFAKKHLQISQEIGDRHGELTARMNVAQLQLVLGRLTS 387
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPE--------NKGKQSG 430
+ + L A +P R +R S E DL++L E + G G
Sbjct: 388 PAASEKPDLAGYEAQGARP-------KRTQRLSAETWDLLRLPLEREQNGDSHHSGDWRG 440
Query: 431 SS--------------------------NSSELSKCD----------------EEESFFE 448
S + S L D +EE FF+
Sbjct: 441 PSRDSLPLPVRSRKYQEGPDAERRPREGSHSPLDSADVRVHVPRTSIPRAPSSDEECFFD 500
Query: 449 LLSRFQSERMDDQRCSLSARQSENKENLQRIT-NTKKSQPSAPRATTIPAHTPGDDDLLD 507
LL++FQS RMDDQRC L Q+ E T + +QPS +P ++ D
Sbjct: 501 LLTKFQSSRMDDQRCPLDDGQAGAAEATAAPTLEDRIAQPSM-------TASPQTEEFFD 553
Query: 508 MIVGLQSKRMDEQRA---ALPHL-----------ADRENAIPDDGFLDMLIRCQGARLED 553
+I QS+R+D+QRA +LP L E P D F +MLI+ Q +R++D
Sbjct: 554 LIASSQSRRLDDQRASVGSLPGLRITHSNAGHLRGHGEPQEPGDDFFNMLIKYQSSRIDD 613
Query: 554 QRSHLPQ---EGSTVPDEDFFSLITRLQSGRMEDQRATV 589
QR P G T+PDEDFFSLI R+Q+ RM++QR +
Sbjct: 614 QRCPPPDVLPRGPTMPDEDFFSLIQRVQAKRMDEQRVDL 652
|
Guanine nucleotide dissociation inhibitor (GDI) which functions as a receptor-independent activator of heterotrimeric G-protein signaling. Keeps G(i/o) alpha subunit in its GDP-bound form thus uncoupling heterotrimeric G-proteins signaling from G protein-coupled receptors. Controls spindle orientation and asymmetric cell fate of cerebral cortical progenitors. May also be involved in macroautophagy in intestinal cells. May play a role in drug addiction. Homo sapiens (taxid: 9606) |
| >sp|Q96AY4|TTC28_HUMAN Tetratricopeptide repeat protein 28 OS=Homo sapiens GN=TTC28 PE=1 SV=4 | Back alignment and function description |
|---|
Score = 194 bits (493), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 117/351 (33%), Positives = 195/351 (55%), Gaps = 20/351 (5%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
+++ G+ L AG A V +AA++ GT L+ +++S L +AY+ LG+ +K+ Y +
Sbjct: 199 VSVVGQELLTAGHHGASVVVLEAALKIGTCSLKLRGSVFSALSSAYWSLGNTEKSTGYMQ 258
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
QDL +A+ + D+ GE ++ GNLG+ G Y EA+ + L ++ +L D+ + AL
Sbjct: 259 QDLDVAKTLGDQTGECRAHGNLGSAFFSKGNYREALTNHRHQLVLAMKLKDREAASSALS 318
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
+LG+VY A G +YP A+ ++Q + L K+ D ++ R G
Sbjct: 319 SLGHVYTAIG------------DYPN--------ALASHKQCVLLAKQSKDELSEARELG 358
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
N+G Y +G+F+ A+ H++ LKIA++ G+K E RA SNLG+++ + + A ++
Sbjct: 359 NMGAVYIAMGDFENAVQCHEQHLKIAKDLGNKREEARAYSNLGSAYHYRRNFDKAMSYHN 418
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
L LAQ+L ++A+E +A LG+ ++D A YH + L IA+ L DR EGRA
Sbjct: 419 YVLELAQELMEKAIEMRAYAGLGHAARCMQDLERAKQYHEQQLGIAEDLKDRAAEGRASS 478
Query: 325 SLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375
+LG H +G+++ AL HL I+++L D Q A N+ + ALGM
Sbjct: 479 NLGIIHQMKGDYDTALKLHKTHLCIAQELSDYAAQGRAYGNMGNAYNALGM 529
|
Homo sapiens (taxid: 9606) |
| >sp|Q80XJ3|TTC28_MOUSE Tetratricopeptide repeat protein 28 OS=Mus musculus GN=Ttc28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 96/303 (31%), Positives = 154/303 (50%), Gaps = 23/303 (7%)
Query: 76 YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135
Y KA+ YH Q+L + + + D GE ++ G+L +GKY A C + LE+ R+L +
Sbjct: 5 YDKALGYHTQELEVYQELSDLPGECRAHGHLAAVYMALGKYTMAFKCYQEQLELGRKLKE 64
Query: 136 KLSEGRALYNLGNV---YHAKGKAIGKVGQQ--------------DPGEYPEEVKVCLQ- 177
E + N+G + AIG QQ D G + C +
Sbjct: 65 PSLEAQVYGNMGITKMNMNVMEDAIGYFEQQLAMLQQLSGNESVLDRGRAYGNLGDCYEA 124
Query: 178 -----EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232
EAIKYYEQ L++ + +N Q +A LGN + G+ +QA+ ++RL +A E
Sbjct: 125 LGDYEEAIKYYEQYLSVAQSLNRMQDQAKAYRGLGNGHRATGSLQQALVCFEKRLVVAHE 184
Query: 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292
G+ + + +A LG+ H LG Y+ A +R L +A+D+ DRA+E+ A LG Y
Sbjct: 185 LGEASNKAQAYGELGSLHSQLGNYEQAISCLERQLNIARDMKDRALESDAACGLGGVYQQ 244
Query: 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
+ +Y TA+ YH L IA++ + +GRA +LG + + G E+A+ + +HL I+ Q
Sbjct: 245 MGEYDTALQYHQLDLQIAEETDNPTCQGRAYGNLGLTYESLGTFERAVVYQEQHLSIAAQ 304
Query: 353 LGD 355
+ D
Sbjct: 305 MND 307
|
Mus musculus (taxid: 10090) |
| >sp|A9JR78|TONSL_DANRE Tonsoku-like protein OS=Danio rerio GN=tonsl PE=2 SV=1 | Back alignment and function description |
|---|
Score = 77.0 bits (188), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 77/321 (23%), Positives = 148/321 (46%), Gaps = 37/321 (11%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
+++L+ +++ +QLG Y GDYQ A++ H+Q+L L+ + D +G A ++ +G
Sbjct: 19 SSNNLKEEASLCNQLGEVYAKTGDYQAAIEEHRQELALSEILHDVIGSAVANRKIGECYA 78
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
+G + A+ + HL ++R ++D E RAL +G Y + ++
Sbjct: 79 ELGNIEAALKHQRLHLNLARSVHDAAEEQRALATIGRTYLFLFDS-------------DQ 125
Query: 172 VKVCLQEAIKYYEQNLALM----------KEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
L+ A ++++LA++ +EI++ A R NLG Y + ++
Sbjct: 126 SANSLKHAEDAFKRSLAIVDERLEGTVSPREISEMKA--RLLLNLGCVYDGMKEPQRCSD 183
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
++ + IA + RAN NLG+ H G++ A ++++ A+ + D+ E++
Sbjct: 184 LIRQSIYIAEKNNLLEDLYRANFNLGSIHFRNGQHSRAMRCFEQSKECARKMKDKFSESE 243
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLII-AQQLMDRVGEGRACWSLGNAHAARGNH---- 336
+S+G L D+ A + + +QQ DR + HA RG
Sbjct: 244 CFHSIGKILLHLGDFSAARRSLKKAFCLGSQQPSDREAVKK-----DFRHAIRGCQLEQT 298
Query: 337 --EKALYFATKHLEISKQLGD 355
E F+ + L++S+QLGD
Sbjct: 299 AAEVTQKFSHEALDLSEQLGD 319
|
Component of the MMS22L-TONSL complex, a complex that stimulates the recombination-dependent repair of stalled or collapsed replication forks. Danio rerio (taxid: 7955) |
| >sp|A2A3L6|TTC24_HUMAN Tetratricopeptide repeat protein 24 OS=Homo sapiens GN=TTC24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 61.6 bits (148), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 85/339 (25%), Positives = 132/339 (38%), Gaps = 64/339 (18%)
Query: 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102
AF A+ T D L A LG AY GD + + +L L + E+K + +
Sbjct: 62 AFLLASKAPQTRDTPVLQACAFNLGAAYVETGDPARGL-----ELLLRAHPEEK-AQGRR 115
Query: 103 SG----NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
G N+ +G+ +A+ R L + D +G A +G Y A G+
Sbjct: 116 HGDQCFNVALAYHALGELPQALAWYHRALGHYQPQGD---QGEAWAKMGACYQALGQ--- 169
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM---------------------------- 190
PE CLQEA + Y Q L
Sbjct: 170 ----------PELAAHCLQEASQAYAQERQLRAAALALGAAAGCMLKSGRHRVGEVVQVL 219
Query: 191 ---KEINDTAAQGRACG----NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243
+ + + + + R G +LG Y L F A+ + L + G++A R
Sbjct: 220 EKSRRLAERSTERRLLGHLYNDLGLGYSQLQLFPLAVEAFLQALPLCWVPGEQATVLR-- 277
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
NLG +H LG YQ A E +++ L +G R + ++ SL + L D+ A D +
Sbjct: 278 -NLGMAHNALGNYQEAREFHQKAADLHGSVGQRWEQGRSFGSLAFALSQLGDHKAARDNY 336
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342
L L A+ D G+ +AC LG A A G +++AL +
Sbjct: 337 LHALQAARDSGDMKGQWQACEGLGAAAARLGQYDQALKY 375
|
Homo sapiens (taxid: 9606) |
| >sp|Q8BYG0|TTC24_MOUSE Tetratricopeptide repeat protein 24 OS=Mus musculus GN=Ttc24 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 3/133 (2%)
Query: 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238
A++ + Q L L ++ ++ Q NLG T+ +LGN+ +A +HQ+ + G +
Sbjct: 54 AVEAFLQALPLCRQPSE---QATVLQNLGMTHNVLGNYWEAQEFHQKAASLHGSVGQRWE 110
Query: 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 298
+ R+ S L S LG+++AA + Y L AQD GD + QAC LG L +
Sbjct: 111 QGRSFSGLAFSLSQLGDHRAAWDSYLHALQAAQDTGDVKGQWQACEGLGAAAARLGQHDQ 170
Query: 299 AIDYHLRHLIIAQ 311
A+ Y+ L + Q
Sbjct: 171 ALKYYKEALALCQ 183
|
Mus musculus (taxid: 10090) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| 242017593 | 639 | G-protein signaling modulator, putative | 0.926 | 0.882 | 0.718 | 0.0 | |
| 193606283 | 603 | PREDICTED: G-protein-signaling modulator | 0.922 | 0.932 | 0.696 | 0.0 | |
| 91078318 | 630 | PREDICTED: similar to g-protein signalli | 0.901 | 0.871 | 0.665 | 0.0 | |
| 270003958 | 619 | hypothetical protein TcasGA2_TC003257 [T | 0.901 | 0.886 | 0.665 | 0.0 | |
| 383864679 | 610 | PREDICTED: G-protein-signaling modulator | 0.927 | 0.926 | 0.660 | 0.0 | |
| 110760901 | 605 | PREDICTED: G-protein-signaling modulator | 0.927 | 0.933 | 0.664 | 0.0 | |
| 380016502 | 606 | PREDICTED: G-protein-signaling modulator | 0.927 | 0.932 | 0.663 | 0.0 | |
| 350416774 | 610 | PREDICTED: G-protein-signaling modulator | 0.924 | 0.922 | 0.663 | 0.0 | |
| 340721029 | 610 | PREDICTED: G-protein-signaling modulator | 0.924 | 0.922 | 0.661 | 0.0 | |
| 332018682 | 610 | G-protein-signaling modulator 2 [Acromyr | 0.927 | 0.926 | 0.646 | 0.0 |
| >gi|242017593|ref|XP_002429272.1| G-protein signaling modulator, putative [Pediculus humanus corporis] gi|212514168|gb|EEB16534.1| G-protein signaling modulator, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 898 bits (2320), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 452/629 (71%), Positives = 503/629 (79%), Gaps = 65/629 (10%)
Query: 2 SVGNISSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA 61
SV N+S+ G + GNMCLELALEGERLCKAGDCR+GVAFFQAAIQAGTDDLRTLSA
Sbjct: 6 SVENLSTQCDNQGSGENGNMCLELALEGERLCKAGDCRSGVAFFQAAIQAGTDDLRTLSA 65
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
IYSQLGNAYFYLGDY KAM YHK DLTLAR M D LGEAKSSGNLGNTLKVMGK+DEAMV
Sbjct: 66 IYSQLGNAYFYLGDYNKAMMYHKHDLTLARTMGDILGEAKSSGNLGNTLKVMGKFDEAMV 125
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
CCKRHL+ISR+LNDKLSEGRALYNLGNVYHAKGK IG+VGQQDPGE+PEEVK CLQ+A+K
Sbjct: 126 CCKRHLDISRELNDKLSEGRALYNLGNVYHAKGKHIGRVGQQDPGEFPEEVKECLQQAVK 185
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
YYE+NL LMKE+ND+AAQGRACGNLGNTYYLLG+F+QAI YHQERL+IAREFGDKAAERR
Sbjct: 186 YYEENLELMKELNDSAAQGRACGNLGNTYYLLGDFQQAIKYHQERLRIAREFGDKAAERR 245
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
ANSNLGNSHIFLGE+++A+E+YKRTLVLAQ+LGDRAVEAQACYSLGNTYTLLRDYPTAI+
Sbjct: 246 ANSNLGNSHIFLGEFESAAEYYKRTLVLAQELGDRAVEAQACYSLGNTYTLLRDYPTAIE 305
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
YHLRHLIIAQQLMDRVGEGRACWSLGNAH+A GNHEKALYFATKHL+ISK+LGD +GQ T
Sbjct: 306 YHLRHLIIAQQLMDRVGEGRACWSLGNAHSAMGNHEKALYFATKHLDISKELGDTMGQNT 365
Query: 362 AQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLT 421
AQMNV DL+K LG+ST ++SPDS + S R NRVRR SMEQL+LIKLT
Sbjct: 366 AQMNVADLKKVLGISTTEISPDSQSSVQST-----------RRNRVRRQSMEQLNLIKLT 414
Query: 422 PENKGKQSGS-------------SNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSAR 468
P+ K K S S SN E + ++EESFF+LLSRFQSERMDDQRCSLS
Sbjct: 415 PDGKQKPSASEMSPPSMPFKSDASNKGE--RLEDEESFFDLLSRFQSERMDDQRCSLSVA 472
Query: 469 QSENKENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPH-- 526
ENK + +S P P +P + DDLLD+IVG+QSKRMDEQR ALPH
Sbjct: 473 DKENK--------SVRSNPLGP----LPNNGETKDDLLDLIVGMQSKRMDEQRVALPHLP 520
Query: 527 ------------------LADRENAIPDDGFLDMLIRCQGARLEDQRSHLPQEGS----- 563
LAD +N PDD FL+ML+RCQG+RLEDQRS LP+E +
Sbjct: 521 GLCPPSVPSQNPVIQRLSLADSKNTAPDDAFLEMLMRCQGSRLEDQRSSLPEESNTDQRK 580
Query: 564 --TVPDEDFFSLITRLQSGRMEDQRATVP 590
TVPDEDFFSLI RLQSGRMEDQRA VP
Sbjct: 581 APTVPDEDFFSLILRLQSGRMEDQRAAVP 609
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|193606283|ref|XP_001943489.1| PREDICTED: G-protein-signaling modulator 2-like isoform 1 [Acyrthosiphon pisum] gi|328710046|ref|XP_003244146.1| PREDICTED: G-protein-signaling modulator 2-like isoform 2 [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 848 bits (2192), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 417/599 (69%), Positives = 487/599 (81%), Gaps = 37/599 (6%)
Query: 17 DGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY 76
D GNMCLELALEGERLCKAGDCR+GVAFFQAA+QAGT+DLRTLSAIYSQLGNAYFYL DY
Sbjct: 12 DAGNMCLELALEGERLCKAGDCRSGVAFFQAAVQAGTNDLRTLSAIYSQLGNAYFYLADY 71
Query: 77 QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136
KA+ +HK DL LAR + DK GEAKSSGNLGNTLKVMG +DEAM+CCKRHLEI+R+L DK
Sbjct: 72 PKALHFHKLDLALARTLGDKPGEAKSSGNLGNTLKVMGNFDEAMICCKRHLEIARELGDK 131
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196
LSEGRALYNLGNVYHAKGK IG+VGQQDPGE+PEEVKVC+++A+KYYE+NL LMKE+ND
Sbjct: 132 LSEGRALYNLGNVYHAKGKHIGRVGQQDPGEFPEEVKVCIEQAVKYYEENLKLMKELNDR 191
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
AA GRACGNLGNTYYLLGNFK+AI YH+ERLKIAREFGDK+AERRANSNLGNSH+FLGE+
Sbjct: 192 AAVGRACGNLGNTYYLLGNFKEAIQYHEERLKIAREFGDKSAERRANSNLGNSHVFLGEF 251
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 316
+ A++HYKRTL+LAQ+L D+AVEAQACYSLGNTYTLLRDY TA+DYHLRHL IAQ+L DR
Sbjct: 252 EEAADHYKRTLILAQELEDKAVEAQACYSLGNTYTLLRDYNTAVDYHLRHLDIAQKLHDR 311
Query: 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS 376
+GEGRACWSLGN + A GNHEKALYFA+KHLEISK++GD +GQ TAQ+N+ D++K+LGMS
Sbjct: 312 IGEGRACWSLGNVNLALGNHEKALYFASKHLEISKEIGDTVGQATAQINIVDIKKSLGMS 371
Query: 377 TNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPENKGKQSGS----- 431
LSPDS +L+++ +N QPSP +RRY RVRR SMEQLDL+KLTP+NKGK S
Sbjct: 372 NGQLSPDSKELLDTISNT-QPSPQLRRY-RVRRQSMEQLDLLKLTPDNKGKLPSSNDKIY 429
Query: 432 ---SNSSELSKCDEEESFFELLSRFQSERMDDQRCSL-SARQSENKENLQRITNTKKSQP 487
S+ S+ S+ E++ FF+LLSRFQ+ RMDDQRC+L S+R E+KEN Q
Sbjct: 430 QSTSSVSKKSEKTEDDPFFDLLSRFQAGRMDDQRCTLGSSRNLEDKEN----------QN 479
Query: 488 SAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLAD--RENAIPDDGFLDMLIR 545
+ I H DDLLDMI G+QSKRMDEQR L L + ++ PDD FL++L+R
Sbjct: 480 ANKLIAQISGHVESQDDLLDMIAGMQSKRMDEQRVELEQLPGIAKPDSEPDDNFLELLMR 539
Query: 546 CQGARLEDQRSHL--------------PQEGSTVPDEDFFSLITRLQSGRMEDQRATVP 590
CQG RLEDQRS L P G TVPDEDFF+LI RLQSGRMEDQRA+VP
Sbjct: 540 CQGERLEDQRSELPVSNISSDGESQRTPNRGPTVPDEDFFTLIMRLQSGRMEDQRASVP 598
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|91078318|ref|XP_972826.1| PREDICTED: similar to g-protein signalling modulator [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 805 bits (2079), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/603 (66%), Positives = 472/603 (78%), Gaps = 54/603 (8%)
Query: 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY KA
Sbjct: 22 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYGKA 81
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
MQYHK DLTLAR M DKLGEAKSSGNLGNTLKVMG++DEA+VCCKRHLE+SR+L D+LSE
Sbjct: 82 MQYHKHDLTLARTMGDKLGEAKSSGNLGNTLKVMGRFDEAVVCCKRHLELSRELGDRLSE 141
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
GRALYNLGNV+HAKGK IG+VG +DPG++ ++VK CLQEA+ YYE+NL LM+E+ D AAQ
Sbjct: 142 GRALYNLGNVFHAKGKHIGRVGHKDPGDFSDDVKGCLQEAVSYYEENLTLMRELGDIAAQ 201
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
GRACGNLGNT+YLLG+F QAI+YH+ERL IAR+FGDKAAERRA+SNLGNSHIF+G+++ A
Sbjct: 202 GRACGNLGNTFYLLGDFAQAIHYHEERLSIARQFGDKAAERRAHSNLGNSHIFMGQFEEA 261
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
+ HYKRTL LAQ+LGD AVEAQACYSLGNTYTLLRDY TAI+YHLRHL+IAQ L DR+GE
Sbjct: 262 AHHYKRTLALAQELGDHAVEAQACYSLGNTYTLLRDYETAIEYHLRHLLIAQNLADRIGE 321
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379
GRACWSLGNA+A+ GNHEKAL FA KHLEISK+LGDP+G+ TA+MN+ DLRK L +
Sbjct: 322 GRACWSLGNANASLGNHEKALQFAKKHLEISKELGDPMGEATAKMNIADLRKILNL---- 377
Query: 380 LSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPENKGKQSGS----SNSS 435
PDS + +S + + +R RVRR SMEQL LIKLTP+ K + + ++
Sbjct: 378 --PDSPESCDS-DSPKENDVTHQRIQRVRRESMEQLSLIKLTPDGKQRPGFTLPPMKSAP 434
Query: 436 ELSKCDEEESFFELLSRFQSERMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTI 495
+K ++++SFF+LLSRFQS+RMDDQRCSL+ NKEN + N +++
Sbjct: 435 SPTKNEDDDSFFDLLSRFQSKRMDDQRCSLTV--DNNKENTN-VVNLPRNE--------- 482
Query: 496 PAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLA------------DRENAIPDDGFLDML 543
G DDL+DMI G+QSKRMDEQR ALPHL R N++PDD FLD L
Sbjct: 483 -----GPDDLIDMIAGMQSKRMDEQRVALPHLPGLQSSSLQKLAESRNNSVPDDNFLDQL 537
Query: 544 IRCQGARLEDQRSHLP--------------QEGSTVPDEDFFSLITRLQSGRMEDQRATV 589
+RCQG+RLEDQRS LP + G+TVPDEDF SLI R QSGRM+DQRA V
Sbjct: 538 VRCQGSRLEDQRSPLPMPAVDVEADPPPARKSGATVPDEDFISLIMRFQSGRMDDQRAAV 597
Query: 590 PSV 592
P V
Sbjct: 598 PRV 600
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|270003958|gb|EFA00406.1| hypothetical protein TcasGA2_TC003257 [Tribolium castaneum] | Back alignment and taxonomy information |
|---|
Score = 804 bits (2076), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 401/603 (66%), Positives = 472/603 (78%), Gaps = 54/603 (8%)
Query: 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY KA
Sbjct: 22 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYGKA 81
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
MQYHK DLTLAR M DKLGEAKSSGNLGNTLKVMG++DEA+VCCKRHLE+SR+L D+LSE
Sbjct: 82 MQYHKHDLTLARTMGDKLGEAKSSGNLGNTLKVMGRFDEAVVCCKRHLELSRELGDRLSE 141
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
GRALYNLGNV+HAKGK IG+VG +DPG++ ++VK CLQEA+ YYE+NL LM+E+ D AAQ
Sbjct: 142 GRALYNLGNVFHAKGKHIGRVGHKDPGDFSDDVKGCLQEAVSYYEENLTLMRELGDIAAQ 201
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
GRACGNLGNT+YLLG+F QAI+YH+ERL IAR+FGDKAAERRA+SNLGNSHIF+G+++ A
Sbjct: 202 GRACGNLGNTFYLLGDFAQAIHYHEERLSIARQFGDKAAERRAHSNLGNSHIFMGQFEEA 261
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
+ HYKRTL LAQ+LGD AVEAQACYSLGNTYTLLRDY TAI+YHLRHL+IAQ L DR+GE
Sbjct: 262 AHHYKRTLALAQELGDHAVEAQACYSLGNTYTLLRDYETAIEYHLRHLLIAQNLADRIGE 321
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379
GRACWSLGNA+A+ GNHEKAL FA KHLEISK+LGDP+G+ TA+MN+ DLRK L +
Sbjct: 322 GRACWSLGNANASLGNHEKALQFAKKHLEISKELGDPMGEATAKMNIADLRKILNL---- 377
Query: 380 LSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPENKGKQSGS----SNSS 435
PDS + +S + + +R RVRR SMEQL LIKLTP+ K + + ++
Sbjct: 378 --PDSPESCDS-DSPKENDVTHQRIQRVRRESMEQLSLIKLTPDGKQRPGFTLPPMKSAP 434
Query: 436 ELSKCDEEESFFELLSRFQSERMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTI 495
+K ++++SFF+LLSRFQS+RMDDQRCSL+ NKEN + N +++
Sbjct: 435 SPTKNEDDDSFFDLLSRFQSKRMDDQRCSLTV--DNNKENTN-VVNLPRNE--------- 482
Query: 496 PAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLA------------DRENAIPDDGFLDML 543
G DDL+DMI G+QSKRMDEQR ALPHL R N++PDD FLD L
Sbjct: 483 -----GPDDLIDMIAGMQSKRMDEQRVALPHLPGLQSSSLQKLAESRNNSVPDDNFLDQL 537
Query: 544 IRCQGARLEDQRSHLP--------------QEGSTVPDEDFFSLITRLQSGRMEDQRATV 589
+RCQG+RLEDQRS LP + G+TVPDEDF SLI R QSGRM+DQRA V
Sbjct: 538 VRCQGSRLEDQRSPLPMPAVDVEADPPPARKSGATVPDEDFISLIMRFQSGRMDDQRAAV 597
Query: 590 PSV 592
P V
Sbjct: 598 PRV 600
|
Source: Tribolium castaneum Species: Tribolium castaneum Genus: Tribolium Family: Tenebrionidae Order: Coleoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383864679|ref|XP_003707805.1| PREDICTED: G-protein-signaling modulator 2 [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 799 bits (2064), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 413/625 (66%), Positives = 476/625 (76%), Gaps = 60/625 (9%)
Query: 2 SVGNISSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA 61
S N+SS S + NMCLELALEGERLCKAGDC+ GVAFFQAAIQAGTDDLR LSA
Sbjct: 6 SAENLSSEGQNS---ERWNMCLELALEGERLCKAGDCKTGVAFFQAAIQAGTDDLRILSA 62
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
IYSQLGNAYFYLGDY KAMQYHK DL+LARNM DKLGEAKSSGNLGN+LKVMGK+DEAM+
Sbjct: 63 IYSQLGNAYFYLGDYVKAMQYHKLDLSLARNMGDKLGEAKSSGNLGNSLKVMGKFDEAMI 122
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
CCKRHLEISR++ DKLSEGRALYNLGNVYHAKGK G+VG QDPGE+ E+V+ CLQ+A++
Sbjct: 123 CCKRHLEISREMGDKLSEGRALYNLGNVYHAKGKQAGRVGHQDPGEFSEDVRQCLQQAVR 182
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
YYE+NL LMKE+ND+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIA+EFGDKAAERR
Sbjct: 183 YYEENLELMKELNDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAKEFGDKAAERR 242
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
ANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDYPTA++
Sbjct: 243 ANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYPTAVE 302
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
YHLRHL IAQQL D+VGEGRACWSLGNA+AA GNHEKAL++A HL ISK+L DP+GQ T
Sbjct: 303 YHLRHLEIAQQLKDQVGEGRACWSLGNAYAAMGNHEKALHYANLHLNISKELEDPMGQAT 362
Query: 362 AQMNVTDLRKALGM-----STNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLD 416
AQMNV DL+K LG+ N + L N+ +N N SP RY R+RR SM+ LD
Sbjct: 363 AQMNVDDLQKILGLEKGQQENNKENIAQKLLTNTSSNINISSPC--RY-RLRRQSMDNLD 419
Query: 417 LIKLTPENKGKQSG------SSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQS 470
LIKLTP+ K K+ S+N + EE+SFF+LLSRFQS RMDDQRC+L
Sbjct: 420 LIKLTPDTKLKEQAESQIDKSNNVTPQLTQKEEDSFFDLLSRFQSGRMDDQRCAL----- 474
Query: 471 ENKENLQRITNTKKSQPSAPRATTIPAHTPGD----DDLLDMIVGLQSKRMDEQRAALPH 526
NT ++Q T P D +DLLD+I G+QSKRMDEQR LP+
Sbjct: 475 ----------NTNRNQKF---RTITPELCDSDEKDGEDLLDLIAGMQSKRMDEQRVTLPY 521
Query: 527 LAD-RENAIPDDGFLDMLIRCQGARLEDQRSHLP--------------------QEGSTV 565
L N DD F++ML+RCQG+RLEDQRS LP Q GSTV
Sbjct: 522 LPGLNTNQDADDSFIEMLVRCQGSRLEDQRSPLPAASTVHDAEEEHSQRSNGTTQAGSTV 581
Query: 566 PDEDFFSLITRLQSGRMEDQRATVP 590
P+ED FSLI RLQ+GRMEDQRA+ P
Sbjct: 582 PEEDLFSLIQRLQAGRMEDQRASGP 606
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|110760901|ref|XP_393796.3| PREDICTED: G-protein-signaling modulator 2 [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2062), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/620 (66%), Positives = 473/620 (76%), Gaps = 55/620 (8%)
Query: 2 SVGNISSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA 61
S N+SS S + NMCLELALEGERLCKAGDC++GVAFFQAAIQAGTDDLR LSA
Sbjct: 6 SAENLSSEGQNS---ERWNMCLELALEGERLCKAGDCKSGVAFFQAAIQAGTDDLRILSA 62
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
IYSQLGNAYFYLGDY KAMQYHK DLTLARNM DKLGEAKSSGNLGNTLKVMGK+DEAM+
Sbjct: 63 IYSQLGNAYFYLGDYVKAMQYHKLDLTLARNMGDKLGEAKSSGNLGNTLKVMGKFDEAMI 122
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
CCKRHLEISR++ DKLSEGRALYNLGNVYHAKGK G+VG QDPGE+ E+V+ CLQ+A+
Sbjct: 123 CCKRHLEISREIGDKLSEGRALYNLGNVYHAKGKQAGRVGHQDPGEFSEDVRQCLQQAVH 182
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
YYE+NL LMKE+ D+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIAREFGDKAAERR
Sbjct: 183 YYEENLELMKELEDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAREFGDKAAERR 242
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
ANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDYPTAI+
Sbjct: 243 ANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYPTAIE 302
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
YHL HL IAQQL DRVGEGRACWSLGNA+AA GNHEKAL++A HL ISK+L DP+GQ T
Sbjct: 303 YHLWHLEIAQQLKDRVGEGRACWSLGNAYAAMGNHEKALHYANLHLNISKELEDPMGQAT 362
Query: 362 AQMNVTDLRKALGM-----STNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLD 416
AQMNV DL+K LG+ N + L N+ +N N SP RY R+RR SM+ LD
Sbjct: 363 AQMNVDDLQKILGLKKGQQENNKENIAQKLLSNTGSNVNISSPC--RY-RLRRQSMDNLD 419
Query: 417 LIKLTPENKGKQSG------SSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQS 470
LIKLTP+ K K+ S+N++ EE+SFF+LLSRFQS RMDDQRC+L
Sbjct: 420 LIKLTPDAKLKEQAESQIDKSNNTTPQITQKEEDSFFDLLSRFQSGRMDDQRCAL----- 474
Query: 471 ENKENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLAD- 529
N+ R K T P +DLL++I G+QSKRMDEQR LP+L
Sbjct: 475 ----NINRNQKFK---------TITPEDDKDGEDLLELIAGMQSKRMDEQRVTLPYLPGL 521
Query: 530 RENAIPDDGFLDMLIRCQGARLEDQRSHLP-------------------QEGSTVPDEDF 570
N DD F++ML++CQG+RLEDQRS LP Q GSTVP+ED
Sbjct: 522 NSNQDSDDSFIEMLVKCQGSRLEDQRSPLPAASTVHDTEEEHNQRSNGTQAGSTVPEEDL 581
Query: 571 FSLITRLQSGRMEDQRATVP 590
F+LI RLQ+GRMEDQRA+ P
Sbjct: 582 FALIQRLQAGRMEDQRASGP 601
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|380016502|ref|XP_003692222.1| PREDICTED: G-protein-signaling modulator 2 [Apis florea] | Back alignment and taxonomy information |
|---|
Score = 798 bits (2061), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 412/621 (66%), Positives = 473/621 (76%), Gaps = 56/621 (9%)
Query: 2 SVGNISSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA 61
S N+SS S + NMCLELALEGERLCKAGDC++GVAFFQAAIQAGTDDLR LSA
Sbjct: 6 SAENLSSEGQNS---ERWNMCLELALEGERLCKAGDCKSGVAFFQAAIQAGTDDLRILSA 62
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
IYSQLGNAYFYLGDY KAMQYHK DLTLARNM DKLGEAKSSGNLGNTLKVMGK+DEAM+
Sbjct: 63 IYSQLGNAYFYLGDYVKAMQYHKLDLTLARNMGDKLGEAKSSGNLGNTLKVMGKFDEAMI 122
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
CCKRHLEISR++ DKLSEGRALYNLGNVYHAKGK G+VG QDPGE+ E+V+ CLQ+A+
Sbjct: 123 CCKRHLEISREIGDKLSEGRALYNLGNVYHAKGKQAGRVGHQDPGEFSEDVRQCLQQAVH 182
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
YYE+NL LMKE+ D+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIAREFGDKAAERR
Sbjct: 183 YYEENLELMKELEDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAREFGDKAAERR 242
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
ANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDYPTAI+
Sbjct: 243 ANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYPTAIE 302
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
YHL HL IAQQL DRVGEGRACWSLGNA+AA GNHEKAL++A HL ISK+L DP+GQ T
Sbjct: 303 YHLWHLEIAQQLKDRVGEGRACWSLGNAYAAMGNHEKALHYANLHLNISKELEDPMGQAT 362
Query: 362 AQMNVTDLRKALGM-----STNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLD 416
AQMNV DL+K LG+ N + L N+ +N N SP RY R+RR SM+ LD
Sbjct: 363 AQMNVDDLQKILGLEKGQQENNKENIAQKLLTNTGSNINISSPC--RY-RLRRQSMDNLD 419
Query: 417 LIKLTPENKGKQSG------SSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQS 470
LIKLTP+ K K+ S+N++ EE+SFF+LLSRFQS RMDDQRC+L
Sbjct: 420 LIKLTPDAKLKEQAESQIDKSNNATPQITQKEEDSFFDLLSRFQSGRMDDQRCAL----- 474
Query: 471 ENKENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLAD- 529
N+ R K T P +DLL++I G+QSKRMDEQR LP+L
Sbjct: 475 ----NINRNQKFK---------TITPEDDKDGEDLLELIAGMQSKRMDEQRVTLPYLPGL 521
Query: 530 RENAIPDDGFLDMLIRCQGARLEDQRSHLP--------------------QEGSTVPDED 569
N DD F++ML++CQG+RLEDQRS LP Q GSTVP+ED
Sbjct: 522 NSNQDSDDSFIEMLVKCQGSRLEDQRSPLPVASTVHDAEEEHNQRSNGTTQAGSTVPEED 581
Query: 570 FFSLITRLQSGRMEDQRATVP 590
F+LI RLQ+GRMEDQRA+ P
Sbjct: 582 LFALIQRLQAGRMEDQRASGP 602
|
Source: Apis florea Species: Apis florea Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|350416774|ref|XP_003491096.1| PREDICTED: G-protein-signaling modulator 2-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 796 bits (2057), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 406/612 (66%), Positives = 469/612 (76%), Gaps = 49/612 (8%)
Query: 11 SQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70
S+ ++ NMCLELALEGERLCKAGDC++GVAFFQAAIQAGTDDLR LSAIYSQLGNAY
Sbjct: 12 SEGQNSERWNMCLELALEGERLCKAGDCKSGVAFFQAAIQAGTDDLRILSAIYSQLGNAY 71
Query: 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130
FYLGDY KAMQYHK DLTLARNM DKLGEAKSSGNLGNTLKVMGK+DEAM+CCKRHLEIS
Sbjct: 72 FYLGDYVKAMQYHKLDLTLARNMGDKLGEAKSSGNLGNTLKVMGKFDEAMICCKRHLEIS 131
Query: 131 RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
R++ DKLSEGRALYNLGNVYHAKGK G+VG QDPGE+ E+V+ CLQ+A+ YYE+NL LM
Sbjct: 132 REIGDKLSEGRALYNLGNVYHAKGKQAGRVGHQDPGEFSEDVRQCLQQAVHYYEENLELM 191
Query: 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250
KE+ D+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIAREFGDKAAERRANSNLGNSH
Sbjct: 192 KELEDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAREFGDKAAERRANSNLGNSH 251
Query: 251 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310
IFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDYPTAI+YHL HL IA
Sbjct: 252 IFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYPTAIEYHLWHLEIA 311
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLR 370
QQL DRVGEGRACWSLGNA+AA GNHEKAL++A HL ISK+L DP+GQ TAQMNV DL+
Sbjct: 312 QQLKDRVGEGRACWSLGNAYAAMGNHEKALHYANLHLTISKELEDPMGQATAQMNVDDLQ 371
Query: 371 KALGMSTNDLSPDSLQL-----INSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPENK 425
K LG+ + + N+ AN N SP RY R+RR SM+ LDLIKLTP+ K
Sbjct: 372 KILGLEKGQQENNKENIAQKLSTNTGANVNISSPC--RY-RLRRQSMDNLDLIKLTPDAK 428
Query: 426 GKQSG------SSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQSENKENLQRI 479
K+ S+N++ EE+SFF+LLSRFQS RMDDQRC+L N+ R
Sbjct: 429 LKEQAESQIDKSNNTTPQLTQKEEDSFFDLLSRFQSGRMDDQRCAL---------NINRN 479
Query: 480 TNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLAD-RENAIPDDG 538
+ P + +DLL++I G+QSKRMDEQR LP+L N DD
Sbjct: 480 PKFRTITPE-----VCESEDKDGEDLLELIAGMQSKRMDEQRVTLPYLPGLNSNQDSDDS 534
Query: 539 FLDMLIRCQGARLEDQRSHLP--------------------QEGSTVPDEDFFSLITRLQ 578
F++ML+RCQG+RLEDQRS LP Q GSTVP+ED F+LI RLQ
Sbjct: 535 FIEMLVRCQGSRLEDQRSPLPAASTVHDAEEEHNQRSNGTTQAGSTVPEEDLFALIQRLQ 594
Query: 579 SGRMEDQRATVP 590
+GRMEDQRA+ P
Sbjct: 595 AGRMEDQRASGP 606
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|340721029|ref|XP_003398929.1| PREDICTED: G-protein-signaling modulator 2-like [Bombus terrestris] | Back alignment and taxonomy information |
|---|
Score = 795 bits (2053), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 405/612 (66%), Positives = 469/612 (76%), Gaps = 49/612 (8%)
Query: 11 SQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70
S+ ++ NMCLELALEGERLCKAGDC++GVAFFQAAIQAGTDDLR LSAIYSQLGNAY
Sbjct: 12 SEGQNSERWNMCLELALEGERLCKAGDCKSGVAFFQAAIQAGTDDLRILSAIYSQLGNAY 71
Query: 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130
FYLGDY KAMQYHK DLTLARNM DKLGEAKSSGNLGNTLKVMGK+DEAM+CCKRHLEIS
Sbjct: 72 FYLGDYVKAMQYHKLDLTLARNMGDKLGEAKSSGNLGNTLKVMGKFDEAMICCKRHLEIS 131
Query: 131 RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
R++ DKLSEGRALYNLGNVYHAKGK G+VG QDPGE+ E+V+ CLQ+A+ YYE+NL LM
Sbjct: 132 REIGDKLSEGRALYNLGNVYHAKGKQAGRVGHQDPGEFSEDVRQCLQQAVHYYEENLELM 191
Query: 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250
KE+ D+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIAREFGDKAAERRANSNLGNSH
Sbjct: 192 KELEDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAREFGDKAAERRANSNLGNSH 251
Query: 251 IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310
IFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDYPTAI+YHL HL IA
Sbjct: 252 IFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYPTAIEYHLWHLEIA 311
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLR 370
QQL DRVGEGRACWSLGNA+AA GNHEKAL++A HL ISK+L DP+GQ TAQMNV DL+
Sbjct: 312 QQLKDRVGEGRACWSLGNAYAAMGNHEKALHYANLHLTISKELEDPMGQATAQMNVDDLQ 371
Query: 371 KALGMSTNDLSPDSLQL-----INSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPENK 425
K LG+ + + N+ +N N SP RY R+RR SM+ LDLIKLTP+ K
Sbjct: 372 KILGLEKGQQENNKENIAQKLSTNTGSNVNISSPC--RY-RLRRQSMDNLDLIKLTPDAK 428
Query: 426 GKQSG------SSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQSENKENLQRI 479
K+ S+N++ EE+SFF+LLSRFQS RMDDQRC+L N+ R
Sbjct: 429 LKEQAESQIDKSNNTTPQLTQKEEDSFFDLLSRFQSGRMDDQRCAL---------NINRN 479
Query: 480 TNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLAD-RENAIPDDG 538
+ P + +DLL++I G+QSKRMDEQR LP+L N DD
Sbjct: 480 PKFRTITPE-----VCESEDKDGEDLLELIAGMQSKRMDEQRVTLPYLPGLNSNQDSDDS 534
Query: 539 FLDMLIRCQGARLEDQRSHLP--------------------QEGSTVPDEDFFSLITRLQ 578
F++ML+RCQG+RLEDQRS LP Q GSTVP+ED F+LI RLQ
Sbjct: 535 FIEMLVRCQGSRLEDQRSPLPAASTVHDAEEEHNQRSNGTTQAGSTVPEEDLFALIQRLQ 594
Query: 579 SGRMEDQRATVP 590
+GRMEDQRA+ P
Sbjct: 595 AGRMEDQRASGP 606
|
Source: Bombus terrestris Species: Bombus terrestris Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332018682|gb|EGI59254.1| G-protein-signaling modulator 2 [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2011), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 404/625 (64%), Positives = 474/625 (75%), Gaps = 60/625 (9%)
Query: 2 SVGNISSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA 61
S N+SS S + NMCLELALEGERLCKAGDC++GVAFFQAAIQAGTDDLR LSA
Sbjct: 6 SAENLSSEGQNS---ERWNMCLELALEGERLCKAGDCKSGVAFFQAAIQAGTDDLRILSA 62
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
IYSQLGNAYFYLGDY KAMQYHK DLTLARNM DKLGEAKSSGNLGNTLKV+GK+DEAM+
Sbjct: 63 IYSQLGNAYFYLGDYVKAMQYHKLDLTLARNMGDKLGEAKSSGNLGNTLKVIGKFDEAMI 122
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
CCKRHLEISR++ DKLSEGRALYNLGNVYHAKGK G++G QDPGE+ E+V+ CLQ+A++
Sbjct: 123 CCKRHLEISREIGDKLSEGRALYNLGNVYHAKGKQAGRIGHQDPGEFSEDVRQCLQQAVR 182
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
YYE+NL LM+E+ D+AAQGRACGNLGNT+YLLG+F+QAIYYH ERLKIAREFGDK AERR
Sbjct: 183 YYEENLELMRELEDSAAQGRACGNLGNTFYLLGDFQQAIYYHNERLKIAREFGDKPAERR 242
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
ANSNLGNSHIFLGE++ A++HYKRTLVLAQ+LGDR VEAQACYSLGNTYTLLRDY AI+
Sbjct: 243 ANSNLGNSHIFLGEFEKAAQHYKRTLVLAQELGDREVEAQACYSLGNTYTLLRDYSAAIE 302
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361
YHL HL IAQQL DRVGEGRACWSLGNA+AA GNHEKAL+++ HL ISK+L D +GQ T
Sbjct: 303 YHLWHLSIAQQLKDRVGEGRACWSLGNAYAAMGNHEKALHYSNLHLHISKELEDQMGQAT 362
Query: 362 AQMNVTDLRKALGMSTNDLSPD----SLQLINSYANANQPSPGVRRYNRVRRSSMEQLDL 417
AQMNV DL+K LG+ N + ++Q + + A +N + RY R+RR SM+ LDL
Sbjct: 363 AQMNVDDLQKILGLEKNQQDSNKENLNIQKLITNATSNVSTTMPCRY-RLRRQSMDNLDL 421
Query: 418 IKLTPENKGKQSGS------SNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSARQSE 471
IKLTP+ K K N ++ S+ EE++FF+LLSRFQS RMDDQRC+L
Sbjct: 422 IKLTPDAKQKDKSEIVLDKDDNVAQPSQ-KEEDNFFDLLSRFQSGRMDDQRCAL------ 474
Query: 472 NKENLQRITNTKKSQPSAPRATTI-PAHTPGDD----DLLDMIVGLQSKRMDEQRAALPH 526
NTK + P+ TI P + DD DLL++I G+QSKRMDEQR LP+
Sbjct: 475 ---------NTKHN----PKYRTISPEVSDIDDKDGEDLLELIAGMQSKRMDEQRVTLPY 521
Query: 527 LAD-RENAIPDDGFLDMLIRCQGARLEDQRSHLP--------------------QEGSTV 565
L N DD F++ML+RCQ +RLEDQRS LP Q GSTV
Sbjct: 522 LPGLNTNQDSDDSFIEMLVRCQSSRLEDQRSPLPAASTLQDAEEERGRRVNGKTQSGSTV 581
Query: 566 PDEDFFSLITRLQSGRMEDQRATVP 590
P+ED F+LI RLQ+GRMEDQRA+ P
Sbjct: 582 PEEDLFALIQRLQAGRMEDQRASGP 606
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 609 | ||||||
| UNIPROTKB|I3LB55 | 683 | GPSM2 "Uncharacterized protein | 0.645 | 0.575 | 0.658 | 2.2e-163 | |
| UNIPROTKB|E1BIX7 | 681 | GPSM2 "Uncharacterized protein | 0.645 | 0.577 | 0.655 | 2.8e-163 | |
| UNIPROTKB|E2QSP1 | 682 | GPSM2 "Uncharacterized protein | 0.645 | 0.576 | 0.659 | 1.2e-162 | |
| UNIPROTKB|P81274 | 684 | GPSM2 "G-protein-signaling mod | 0.645 | 0.574 | 0.658 | 2e-162 | |
| FB|FBgn0040080 | 658 | raps "rapsynoid" [Drosophila m | 0.870 | 0.805 | 0.572 | 2.2e-162 | |
| UNIPROTKB|E1BR28 | 663 | GPSM2 "Uncharacterized protein | 0.646 | 0.594 | 0.645 | 5.2e-162 | |
| MGI|MGI:1923373 | 679 | Gpsm2 "G-protein signalling mo | 0.650 | 0.583 | 0.655 | 2e-160 | |
| UNIPROTKB|F6V2B9 | 720 | GPSM2 "Uncharacterized protein | 0.645 | 0.545 | 0.660 | 8.8e-158 | |
| ZFIN|ZDB-GENE-040426-1169 | 670 | gpsm2 "G-protein signalling mo | 0.804 | 0.731 | 0.536 | 6.2e-157 | |
| UNIPROTKB|E1BS79 | 588 | GPSM1 "Uncharacterized protein | 0.643 | 0.666 | 0.645 | 4.1e-149 |
| UNIPROTKB|I3LB55 GPSM2 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 2.2e-163, Sum P(2) = 2.2e-163
Identities = 266/404 (65%), Positives = 337/404 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDRLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD G++PEEV+ LQ A+ YYE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDVGDFPEEVRNALQAAVDYYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQACYSLGNT+TLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQACYSLGNTHTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---TN 378
ACWSLGNA+ A GNH+ A++FA KHLEIS+++GD G++TA++N++DL+ LG+S N
Sbjct: 324 ACWSLGNAYTALGNHDXAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+ +++++ NS A +P G RR SME ++L+KLTP
Sbjct: 384 SVMSENIEIDNSLHGA-RPKFG-------RRHSMENMELMKLTP 419
|
|
| UNIPROTKB|E1BIX7 GPSM2 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 2.8e-163, Sum P(2) = 2.8e-163
Identities = 265/404 (65%), Positives = 338/404 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G Q+ GE+PEEV+ LQ A+ YYE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQEVGEFPEEVRNALQAAVDYYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRA+EAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAIEAQSCYSLGNTYTLLQDYEKAIDYHLKHLTIAQELNDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---TN 378
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S N
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDRSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+ +++++ NS A +P G RR SME ++L+KLTP
Sbjct: 384 SMISENIEIDNSLHGA-RPKFG-------RRHSMENMELMKLTP 419
|
|
| UNIPROTKB|E2QSP1 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1411 (501.8 bits), Expect = 1.2e-162, Sum P(2) = 1.2e-162
Identities = 267/405 (65%), Positives = 338/405 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLA-RNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140
YH DLTLA R + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E
Sbjct: 84 YHHHDLTLASRTIGDQLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEA 143
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
RALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ YYE+NL+L+ + D AAQG
Sbjct: 144 RALYNLGNVYHAKGKSFGCPGPQDIGEFPEEVRNALQAAVDYYEENLSLVTALGDRAAQG 203
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260
RA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ AS
Sbjct: 204 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETAS 263
Query: 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320
E+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEG
Sbjct: 264 EYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG 323
Query: 321 RACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---T 377
RACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S
Sbjct: 324 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDRSGELTARLNLSDLQMVLGLSYSTN 383
Query: 378 NDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
N + +++++ NS A +P G RR SME ++L+KLTP
Sbjct: 384 NSIMSENIEIDNSLHGA-RPKFG-------RRHSMENMELMKLTP 420
|
|
| UNIPROTKB|P81274 GPSM2 "G-protein-signaling modulator 2" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 1415 (503.2 bits), Expect = 2.0e-162, Sum P(2) = 2.0e-162
Identities = 266/404 (65%), Positives = 337/404 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ +YE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---TN 378
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S N
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+ ++ + I+S N +P G RR SME ++L+KLTP
Sbjct: 384 SIMSENTE-IDSSLNGVRPKLG-------RRHSMENMELMKLTP 419
|
|
| FB|FBgn0040080 raps "rapsynoid" [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 1581 (561.6 bits), Expect = 2.2e-162, P = 2.2e-162
Identities = 322/562 (57%), Positives = 403/562 (71%)
Query: 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
+MCLELALEGERLCKAGDCRAGVAFFQAAIQAGT+DLRTLSAIYSQLGNAYFYLGDY KA
Sbjct: 41 SMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKA 100
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
MQYHK DLTLA++M D+LGEAKSSGNLGNTLKVMG++DEA +CC+RHL ++RQL D+LSE
Sbjct: 101 MQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSE 160
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
GRALYNLGNVYHAKGK +G Q++PG++ ++VK L A+++Y++NL LM+++ D AQ
Sbjct: 161 GRALYNLGNVYHAKGKHLG---QRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQ 217
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
GRACGNLGNTYYLLG+F+ AI +HQERL+IAREFGD+AAERRANSNLGNSHIFLG+++ A
Sbjct: 218 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDA 277
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
+EHYKRTL LA +LG+R VEAQ+CYSLGNTYTLL ++ TAI+YH RHL IAQ+L DR+GE
Sbjct: 278 AEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGE 337
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379
RACWSLGNAH+A G HE+AL +A +HL+++K+L DP+G+ TA++N++DLRK LGM ++
Sbjct: 338 ARACWSLGNAHSAIGGHERALKYAEQHLQLAKELHDPVGESTARVNISDLRKLLGMPDSE 397
Query: 380 LSP---DSLQLINSYANANQPSPGVR----RYNRVRRSSMEQLDLIKLTPXXXXXXXXXX 432
SP ++ + ++ + S G R RVRR SMEQLDLIK+TP
Sbjct: 398 PSPTEEEARSTASDHSASGNQSDGSGNSQGRMVRVRRQSMEQLDLIKITPDGKRMQEEKL 457
Query: 433 XXXXXXKCDXXXXXXXXXXXXXXXRMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRA 492
K RMDDQRCS+ N + +P +
Sbjct: 458 RAQATRKAKDDDFFEMLSRSQSK-RMDDQRCSIKV----NPSGAPAVATGATRKPLVQQN 512
Query: 493 TTI--PAHTPGDDDLLDMIVGLQSKRMDEQRAALPH--LADRENAI--PDDGFLDMLIRC 546
+ P + PG L+S +A+ H LA PDD FLDML+RC
Sbjct: 513 SLFVDPTNLPG----------LKSPSSTNP-SAIGHGPLARSATTTQQPDDDFLDMLMRC 561
Query: 547 QGARLEDQRSHLPQEGSTVPDE 568
QG+RLE+QRS LP+ T+ E
Sbjct: 562 QGSRLEEQRSELPRPNVTMDAE 583
|
|
| UNIPROTKB|E1BR28 GPSM2 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1399 (497.5 bits), Expect = 5.2e-162, Sum P(2) = 5.2e-162
Identities = 260/403 (64%), Positives = 331/403 (82%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCKAGDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL +Y KA++
Sbjct: 26 CLELALEGERLCKAGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHEYAKALE 85
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D +GEAK+SGNLGNTLKV+G ++EA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 86 YHHHDLTLARTIGDLVGEAKASGNLGNTLKVLGNFEEAIVCCQRHLDISRELNDKVGEAR 145
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYH+KGK + G DPGE PE+VK LQ+A YYE+NL ++ E+ D AAQGR
Sbjct: 146 ALYNLGNVYHSKGKNVACAGTHDPGELPEDVKNALQKAANYYEENLTIVTELGDRAAQGR 205
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGD++AERRA SNLGN++IFLGE++ ASE
Sbjct: 206 AFGNLGNTHYLLGNFRSAVLAHEQRLLIAKEFGDRSAERRAYSNLGNAYIFLGEFETASE 265
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YKRTL LA+ L DRAVEAQACYSLGNTYTLL+DY AIDYHL+HL+IAQ+L D++GEGR
Sbjct: 266 YYKRTLQLARQLKDRAVEAQACYSLGNTYTLLQDYEKAIDYHLKHLVIAQELNDKIGEGR 325
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS--TND 379
ACWSLGNA+ A GNH++A++FA +HLEIS+++GD G++TA++N++DL+ LG+S TN
Sbjct: 326 ACWSLGNAYTALGNHDQAMHFAERHLEISREVGDRSGELTARLNLSDLQMVLGLSYSTNT 385
Query: 380 LSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+++ N +P G RR SME ++L+KLTP
Sbjct: 386 SMMSESHAVDNSLNGTRPRVG-------RRHSMENMELMKLTP 421
|
|
| MGI|MGI:1923373 Gpsm2 "G-protein signalling modulator 2 (AGS3-like, C. elegans)" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 1402 (498.6 bits), Expect = 2.0e-160, Sum P(2) = 2.0e-160
Identities = 263/401 (65%), Positives = 334/401 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S + +
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYS--T 381
Query: 382 PDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+S+ N + + G + RR SME L+L+KLTP
Sbjct: 382 NNSMMSENIEIDGSLHGAGAKLG---RRHSMENLELMKLTP 419
|
|
| UNIPROTKB|F6V2B9 GPSM2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 1420 (504.9 bits), Expect = 8.8e-158, Sum P(2) = 8.8e-158
Identities = 267/404 (66%), Positives = 338/404 (83%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY KA++
Sbjct: 24 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALE 83
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+ E R
Sbjct: 84 YHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAVVCCQRHLDISRELNDKVGEAR 143
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ YYE+NL+L+ + D AAQGR
Sbjct: 144 ALYNLGNVYHAKGKSFGCPGPQDIGEFPEEVRNALQAAVDYYEENLSLVTALGDRAAQGR 203
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++ ASE
Sbjct: 204 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE 263
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+GEGR
Sbjct: 264 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGR 323
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMS---TN 378
ACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ LG+S N
Sbjct: 324 ACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDRSGELTARLNLSDLQMVLGLSYSTNN 383
Query: 379 DLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTP 422
+ +++++ NS A +P G RR SME ++L+KLTP
Sbjct: 384 SIMSENIEIDNSLHGA-RPKFG-------RRHSMENMELMKLTP 419
|
|
| ZFIN|ZDB-GENE-040426-1169 gpsm2 "G-protein signalling modulator 2 (AGS3-like, C. elegans)" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 1359 (483.5 bits), Expect = 6.2e-157, Sum P(2) = 6.2e-157
Identities = 270/503 (53%), Positives = 355/503 (70%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CL+LALE ERLCK GD AGV++F+AAIQ GT+DL+ LSA+YSQLGNAYF+L DY KA++
Sbjct: 26 CLDLALEAERLCKVGDYSAGVSYFEAAIQVGTEDLQVLSAVYSQLGNAYFHLHDYSKALE 85
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
+H DLTL R D+LGEAK+SGNLGNTLKV+G++DEA+VCC+RHL+I+R+L DK+ + R
Sbjct: 86 FHHHDLTLTRTTGDRLGEAKASGNLGNTLKVLGRFDEAIVCCQRHLDIARELGDKVGQAR 145
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYN GNVYHAKGK++ G + PG++PEE+ L+ A +YYE NL ++KE+ D AAQGR
Sbjct: 146 ALYNFGNVYHAKGKSVCWSGAE-PGDFPEEIMTALRRAAEYYEANLCIVKELGDRAAQGR 204
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
GNLGNTYYLLGNF+ A+ H++RL IA+EFGD++AERRA NLGN+ IFLGE++ A+E
Sbjct: 205 TYGNLGNTYYLLGNFRDAVASHEQRLLIAKEFGDRSAERRAYCNLGNACIFLGEFERAAE 264
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
HY+R L +A+ L D AVEAQACYSLGNTYTL++D+ AIDYHL+HLIIAQ L DR+GEGR
Sbjct: 265 HYRRALQIARQLKDLAVEAQACYSLGNTYTLMQDFERAIDYHLKHLIIAQDLNDRIGEGR 324
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381
ACWSLGNAH A GNH++A++FA KHLEISK+ GD G++TA+MNV+DL+ LG+S + +
Sbjct: 325 ACWSLGNAHTALGNHDQAMHFAEKHLEISKETGDRSGELTARMNVSDLQMVLGISYS--T 382
Query: 382 PDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPXXXXXXXXXXXXXXXXKCD 441
+S+ N + N G R RR SME L+L+KLTP K
Sbjct: 383 NNSVLSENKEIDYNLH--GARP-RMSRRHSMENLELLKLTPDKINANGQKWTSDILFKQS 439
Query: 442 XXXXXXXXXXXXXXXRMDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTIPAHTPG 501
R ++ L QS + + LQ +NT+ + P + +T G
Sbjct: 440 KSSLAKSSSKLSFVNRFRGKKHKL---QSSSSKILQDTSNTRDA-PQSKHGST---DMLG 492
Query: 502 DDDLLDMIVGLQSKRMDEQRAAL 524
D+ D++ QS RMD+QR A+
Sbjct: 493 DEGFFDLLSRFQSNRMDDQRCAI 515
|
|
| UNIPROTKB|E1BS79 GPSM1 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 1366 (485.9 bits), Expect = 4.1e-149, Sum P(2) = 4.1e-149
Identities = 257/398 (64%), Positives = 328/398 (82%)
Query: 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81
CLELALEGERLCKAGD +AG AFF+AA+Q GT+DL+TLSAIYSQLGNAYFYL +Y KA++
Sbjct: 5 CLELALEGERLCKAGDFKAGAAFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLKEYSKALE 64
Query: 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141
YHK DLTLAR + D++GEAK+SGNLGNTLK++G++DEA+VCC+RHL+IS++ DK+ E R
Sbjct: 65 YHKHDLTLARTIGDRIGEAKASGNLGNTLKILGQFDEAVVCCQRHLDISQEQGDKIGEAR 124
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
ALYN+GNVYHAKGK + QDPG P+EVK LQ+A +YYE+NL+L+KE+ D AAQGR
Sbjct: 125 ALYNIGNVYHAKGKHLSWNMAQDPGYLPQEVKETLQKASEYYERNLSLVKELGDRAAQGR 184
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A GNLGNT YLLGNF +AI +H+ERL IA+EFGDKAAERRA SNLGN+HIFLG + ++E
Sbjct: 185 AYGNLGNTQYLLGNFSEAIAFHKERLAIAKEFGDKAAERRAYSNLGNAHIFLGRFDISAE 244
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+YK+TL L++ L D+AVEAQACYSLGNTYTLL+DY AI+YHL+HL+IAQ+L DRVGEGR
Sbjct: 245 YYKKTLQLSRQLKDQAVEAQACYSLGNTYTLLQDYEKAIEYHLKHLVIAQELGDRVGEGR 304
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381
ACWSLGNA+ + G+HE+AL+FA KHLEIS+++GD G++TAQ+N+ LR ALG+ D
Sbjct: 305 ACWSLGNAYVSLGSHEQALHFARKHLEISQEIGDRTGELTAQVNMAQLRAALGLGPGD-- 362
Query: 382 PDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIK 419
+ + + Y+ + G R RV+R+SM+ LDL+K
Sbjct: 363 -EEVGMARPYSGYE--AQGARP-KRVQRNSMDSLDLLK 396
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| P81274 | GPSM2_HUMAN | No assigned EC number | 0.5343 | 0.9113 | 0.8114 | yes | N/A |
| Q8VDU0 | GPSM2_MOUSE | No assigned EC number | 0.5257 | 0.9096 | 0.8159 | yes | N/A |
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 609 | |||
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 5e-10 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 2e-09 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 5e-08 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-08 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-07 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-07 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 9e-07 | |
| pfam02188 | 23 | pfam02188, GoLoco, GoLoco motif | 9e-07 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 1e-06 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 3e-06 | |
| pfam02188 | 23 | pfam02188, GoLoco, GoLoco motif | 3e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 4e-06 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 7e-06 | |
| pfam02188 | 23 | pfam02188, GoLoco, GoLoco motif | 1e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 2e-05 | |
| smart00390 | 23 | smart00390, GoLoco, LGN motif, putative GEFs speci | 3e-05 | |
| cd00189 | 100 | cd00189, TPR, Tetratricopeptide repeat domain; typ | 4e-05 | |
| smart00390 | 23 | smart00390, GoLoco, LGN motif, putative GEFs speci | 4e-05 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 1e-04 | |
| smart00390 | 23 | smart00390, GoLoco, LGN motif, putative GEFs speci | 1e-04 | |
| pfam02188 | 23 | pfam02188, GoLoco, GoLoco motif | 2e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-04 | |
| smart00028 | 34 | smart00028, TPR, Tetratricopeptide repeats | 3e-04 | |
| pfam13176 | 36 | pfam13176, TPR_7, Tetratricopeptide repeat | 5e-04 | |
| smart00390 | 23 | smart00390, GoLoco, LGN motif, putative GEFs speci | 8e-04 | |
| pfam13424 | 78 | pfam13424, TPR_12, Tetratricopeptide repeat | 0.002 | |
| COG0457 | 291 | COG0457, NrfG, FOG: TPR repeat [General function p | 0.003 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 56.6 bits (137), Expect = 5e-10
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 32/131 (24%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
LGN Y+ LGDY +A++Y+++ L L + D + NL +GKY+EA+
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALE 55
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ LE+ A YNLG Y+ GK +EA++
Sbjct: 56 DYEKALELDPDNAK------AYYNLGLAYYKLGK--------------------YEEALE 89
Query: 182 YYEQNLALMKE 192
YE+ L L
Sbjct: 90 AYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 35/108 (32%), Positives = 58/108 (53%), Gaps = 12/108 (11%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY LG++ +A+ Y+++ L++ + D A NL ++ LG+Y+ A E
Sbjct: 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD------AYYNLAAAYYKLGKYEEALE 55
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
Y++ L L D A+A Y+LG Y L Y A++ + + L +
Sbjct: 56 DYEKALELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 54.5 bits (129), Expect = 5e-08
Identities = 57/260 (21%), Positives = 104/260 (40%), Gaps = 41/260 (15%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
L L L K G + + A++ + L L+ LG LG Y++A++ +
Sbjct: 62 LLLLALALLKLGRLEEALELLEKALEL--ELLPNLAEALLNLGLLLEALGKYEEALELLE 119
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
+ L L + + L +G Y+EA+ ++ LE+ +LN+ AL
Sbjct: 120 KALALDPDPDLAEALLAL-----GALYELGDYEEALELYEKALELDPELNEL---AEALL 171
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
LG + A G+ +EA++ E+ L L + + A
Sbjct: 172 ALGALLEALGR--------------------YEEALELLEKALKLNPDDD-----AEALL 206
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
NLG Y LG +++A+ Y+++ L++ + + NL + LG Y+ A E +
Sbjct: 207 NLGLLYLKLGKYEEALEYYEKALELDPDNAEALY------NLALLLLELGRYEEALEALE 260
Query: 265 RTLVLAQDLGDRAVEAQACY 284
+ L L DL + +
Sbjct: 261 KALELDPDLYNLGLALLLLL 280
|
Length = 291 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.7 bits (119), Expect = 7e-08
Identities = 22/69 (31%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHY 263
NL LG++ +A+ ++ L++ARE G+ E RA +NL ++ LG+Y A E+
Sbjct: 10 NLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEALEYL 69
Query: 264 KRTLVLAQD 272
++ L L +
Sbjct: 70 EKALALREA 78
|
Length = 78 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 1e-07
Identities = 37/126 (29%), Positives = 60/126 (47%), Gaps = 32/126 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
AL NLGN+Y+ G EA++YYE+ AL E++ A
Sbjct: 2 ALLNLGNLYYKLGD--------------------YDEALEYYEK--AL--ELDPDNA--D 35
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NL YY LG +++A+ +++ L++ + A NLG ++ LG+Y+ A E
Sbjct: 36 AYYNLAAAYYKLGKYEEALEDYEKALELDPDNAK------AYYNLGLAYYKLGKYEEALE 89
Query: 262 HYKRTL 267
Y++ L
Sbjct: 90 AYEKAL 95
|
Length = 100 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-07
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Query: 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-AKSSGNLGNTLKVMGK 115
L+A + L LGDY +A++ ++ L LAR + + E A++ NL +G
Sbjct: 2 PDLAAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD 61
Query: 116 YDEAMVCCKRHLEISRQ 132
YDEA+ ++ L +
Sbjct: 62 YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 50.6 bits (119), Expect = 9e-07
Identities = 57/254 (22%), Positives = 104/254 (40%), Gaps = 43/254 (16%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
L A LG ++A++ ++ A +E A++ NLG L+ +GKY+EA+
Sbjct: 62 LLLLALALLKLGRLEEALELLEK----ALELELLPNLAEALLNLGLLLEALGKYEEALEL 117
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ L + + + G +EA++
Sbjct: 118 LEKALALDPDPDLA-----EALLALGALYELGD--------------------YEEALEL 152
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
YE+ L L E+N+ A LG LG +++A+ ++ LK+ + + A
Sbjct: 153 YEKALELDPELNELAEALL---ALGALLEALGRYEEALELLEKALKL-----NPDDDAEA 204
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
NLG ++ LG+Y+ A E+Y++ L L D A+A Y+L L Y A++
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEALEA 258
Query: 303 HLRHLIIAQQLMDR 316
+ L + L +
Sbjct: 259 LEKALELDPDLYNL 272
|
Length = 291 |
| >gnl|CDD|145376 pfam02188, GoLoco, GoLoco motif | Back alignment and domain information |
|---|
Score = 45.0 bits (108), Expect = 9e-07
Identities = 16/23 (69%), Positives = 20/23 (86%)
Query: 443 EESFFELLSRFQSERMDDQRCSL 465
+E FF+LL+R QS R+DDQRCSL
Sbjct: 1 DEDFFDLLARAQSSRLDDQRCSL 23
|
Length = 23 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 34/125 (27%), Positives = 54/125 (43%), Gaps = 32/125 (25%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
NLGN +G YDEA+ ++ LE+ A YNL Y+ GK
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDP------DNADAYYNLAAAYYKLGK--------- 49
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+EA++ YE+ L L + A NLG YY LG +++A+ ++
Sbjct: 50 -----------YEEALEDYEKALELDPDNAK------AYYNLGLAYYKLGKYEEALEAYE 92
Query: 225 ERLKI 229
+ L++
Sbjct: 93 KALEL 97
|
Length = 100 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 28/102 (27%), Positives = 52/102 (50%), Gaps = 10/102 (9%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
G K GD + +++ A++ D+ + Y L AY+ LG Y++A++ +++ L
Sbjct: 6 LGNLYYKLGDYDEALEYYEKALELDPDN----ADAYYNLAAAYYKLGKYEEALEDYEKAL 61
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
L + AK+ NLG +GKY+EA+ ++ LE+
Sbjct: 62 ELDPDN------AKAYYNLGLAYYKLGKYEEALEAYEKALEL 97
|
Length = 100 |
| >gnl|CDD|145376 pfam02188, GoLoco, GoLoco motif | Back alignment and domain information |
|---|
Score = 43.5 bits (104), Expect = 3e-06
Identities = 13/23 (56%), Positives = 18/23 (78%)
Query: 567 DEDFFSLITRLQSGRMEDQRATV 589
DEDFF L+ R QS R++DQR ++
Sbjct: 1 DEDFFDLLARAQSSRLDDQRCSL 23
|
Length = 23 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-06
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 21/93 (22%)
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
AL NL V G EA++ E+ L L +E+ + +
Sbjct: 6 AALNNLALVLRRLGD--------------------YDEALELLEKALELARELGEDHPET 45
Query: 201 RAC-GNLGNTYYLLGNFKQAIYYHQERLKIARE 232
NL Y LG++ +A+ Y ++ L +
Sbjct: 46 ARALNNLARLYLALGDYDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 7e-06
Identities = 29/94 (30%), Positives = 43/94 (45%), Gaps = 21/94 (22%)
Query: 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-NDKLSEGRALYNLGNVYHAKGKAIG 158
A + NL L+ +G YDEA+ ++ LE++R+L D RAL NL +Y A G
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGD--- 61
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192
EA++Y E+ LAL +
Sbjct: 62 -----------------YDEALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|145376 pfam02188, GoLoco, GoLoco motif | Back alignment and domain information |
|---|
Score = 41.5 bits (99), Expect = 1e-05
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 536 DDGFLDMLIRCQGARLEDQRSHL 558
D+ F D+L R Q +RL+DQR L
Sbjct: 1 DEDFFDLLARAQSSRLDDQRCSL 23
|
Length = 23 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 42.7 bits (101), Expect = 2e-05
Identities = 24/73 (32%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE-AQACYSLGNTYTLLRDYPTA 299
A +NL LG+Y A E ++ L LA++LG+ E A+A +L Y L DY A
Sbjct: 6 AALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDEA 65
Query: 300 IDYHLRHLIIAQQ 312
++Y + L + +
Sbjct: 66 LEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|214645 smart00390, GoLoco, LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 3e-05
Identities = 15/23 (65%), Positives = 17/23 (73%)
Query: 443 EESFFELLSRFQSERMDDQRCSL 465
+E F+LL R QS RMDDQRC L
Sbjct: 1 DEDLFDLLLRMQSSRMDDQRCEL 23
|
GEF specific for Galpha_i proteins. Length = 23 |
| >gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here | Back alignment and domain information |
|---|
Score = 42.4 bits (100), Expect = 4e-05
Identities = 33/108 (30%), Positives = 51/108 (47%), Gaps = 12/108 (11%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
NLGN + LG+Y A E+Y++ L L D A A Y+L Y L Y A++ +
Sbjct: 5 NLGNLYYKLGDYDEALEYYEKALELDPD------NADAYYNLAAAYYKLGKYEEALEDYE 58
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
+ L + +A ++LG A+ G +E+AL K LE+
Sbjct: 59 KALELDPD------NAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100
|
Length = 100 |
| >gnl|CDD|214645 smart00390, GoLoco, LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 4e-05
Identities = 13/23 (56%), Positives = 17/23 (73%)
Query: 567 DEDFFSLITRLQSGRMEDQRATV 589
DED F L+ R+QS RM+DQR +
Sbjct: 1 DEDLFDLLLRMQSSRMDDQRCEL 23
|
GEF specific for Galpha_i proteins. Length = 23 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 40.4 bits (95), Expect = 1e-04
Identities = 18/74 (24%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS-LGNAHAARGNHEK 338
A A +L L DY A++ + L +A++L + E + L + A G++++
Sbjct: 5 AAALNNLALVLRRLGDYDEALELLEKALELARELGEDHPETARALNNLARLYLALGDYDE 64
Query: 339 ALYFATKHLEISKQ 352
AL + K L + +
Sbjct: 65 ALEYLEKALALREA 78
|
Length = 78 |
| >gnl|CDD|214645 smart00390, GoLoco, LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Score = 39.0 bits (92), Expect = 1e-04
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 536 DDGFLDMLIRCQGARLEDQRSHL 558
D+ D+L+R Q +R++DQR L
Sbjct: 1 DEDLFDLLLRMQSSRMDDQRCEL 23
|
GEF specific for Galpha_i proteins. Length = 23 |
| >gnl|CDD|145376 pfam02188, GoLoco, GoLoco motif | Back alignment and domain information |
|---|
Score = 38.5 bits (91), Expect = 2e-04
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 502 DDDLLDMIVGLQSKRMDEQRAAL 524
D+D D++ QS R+D+QR +L
Sbjct: 1 DEDFFDLLARAQSSRLDDQRCSL 23
|
Length = 23 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 14/32 (43%), Positives = 20/32 (62%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93
LGNAY LGDY +A++Y+++ L L N
Sbjct: 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|197478 smart00028, TPR, Tetratricopeptide repeats | Back alignment and domain information |
|---|
Score = 37.8 bits (89), Expect = 3e-04
Identities = 11/33 (33%), Positives = 20/33 (60%)
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233
A NLGN Y LG++ +A+ Y+++ L++
Sbjct: 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. Length = 34 |
| >gnl|CDD|221958 pfam13176, TPR_7, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 5e-04
Identities = 15/34 (44%), Positives = 23/34 (67%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96
S LG Y LGDY+KA+ +++ L LA++ ED+
Sbjct: 2 LSNLGRLYRKLGDYEKAISLYERALALAKDPEDR 35
|
Length = 36 |
| >gnl|CDD|214645 smart00390, GoLoco, LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 8e-04
Identities = 12/23 (52%), Positives = 18/23 (78%)
Query: 502 DDDLLDMIVGLQSKRMDEQRAAL 524
D+DL D+++ +QS RMD+QR L
Sbjct: 1 DEDLFDLLLRMQSSRMDDQRCEL 23
|
GEF specific for Galpha_i proteins. Length = 23 |
| >gnl|CDD|205602 pfam13424, TPR_12, Tetratricopeptide repeat | Back alignment and domain information |
|---|
Score = 37.3 bits (87), Expect = 0.002
Identities = 18/68 (26%), Positives = 29/68 (42%), Gaps = 5/68 (7%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQ----AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
L + GD + + A++ G D T A + L Y LGDY +A++Y +
Sbjct: 12 ALVLRRLGDYDEALELLEKALELARELGEDHPETARA-LNNLARLYLALGDYDEALEYLE 70
Query: 85 QDLTLARN 92
+ L L
Sbjct: 71 KALALREA 78
|
Length = 78 |
| >gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 39.8 bits (91), Expect = 0.003
Identities = 43/176 (24%), Positives = 75/176 (42%), Gaps = 17/176 (9%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
L+EA++ E+ L L N A NLG LG +++A+ ++ L + +
Sbjct: 75 LEEALELLEKALELELLPNL----AEALLNLGLLLEALGKYEEALELLEKALALDPDPDL 130
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
A + LG+Y+ A E Y++ L L +L + A +A +LG L
Sbjct: 131 AEALLALGA-----LYELGDYEEALELYEKALELDPELNELA---EALLALGALLEALGR 182
Query: 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351
Y A++ + L + + A +LG + G +E+AL + K LE+
Sbjct: 183 YEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDP 233
|
Length = 291 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| KOG1130|consensus | 639 | 100.0 | ||
| KOG1130|consensus | 639 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| KOG4626|consensus | 966 | 100.0 | ||
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.94 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.92 | |
| KOG1840|consensus | 508 | 99.91 | ||
| KOG1840|consensus | 508 | 99.89 | ||
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.89 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.86 | |
| KOG1126|consensus | 638 | 99.86 | ||
| KOG1941|consensus | 518 | 99.85 | ||
| KOG1126|consensus | 638 | 99.84 | ||
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.84 | |
| KOG2003|consensus | 840 | 99.82 | ||
| KOG1155|consensus | 559 | 99.82 | ||
| KOG0547|consensus | 606 | 99.81 | ||
| KOG0547|consensus | 606 | 99.81 | ||
| KOG1155|consensus | 559 | 99.8 | ||
| KOG2002|consensus | 1018 | 99.8 | ||
| KOG2002|consensus | 1018 | 99.8 | ||
| KOG1941|consensus | 518 | 99.79 | ||
| KOG1173|consensus | 611 | 99.79 | ||
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.77 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.77 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.76 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.76 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.75 | |
| KOG2076|consensus | 895 | 99.75 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.74 | |
| KOG2003|consensus | 840 | 99.73 | ||
| KOG0548|consensus | 539 | 99.72 | ||
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.7 | |
| KOG1173|consensus | 611 | 99.7 | ||
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.7 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 99.69 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.68 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.67 | |
| KOG0550|consensus | 486 | 99.67 | ||
| KOG1125|consensus | 579 | 99.66 | ||
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.66 | |
| KOG2076|consensus | 895 | 99.66 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.65 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.65 | |
| KOG1129|consensus | 478 | 99.64 | ||
| KOG0624|consensus | 504 | 99.64 | ||
| KOG0548|consensus | 539 | 99.64 | ||
| KOG1129|consensus | 478 | 99.64 | ||
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.62 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.61 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.59 | |
| KOG1174|consensus | 564 | 99.57 | ||
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.57 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.56 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.56 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.55 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 99.55 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.51 | |
| KOG0550|consensus | 486 | 99.5 | ||
| KOG1125|consensus | 579 | 99.5 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.49 | |
| KOG1174|consensus | 564 | 99.46 | ||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 99.43 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.43 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.43 | |
| KOG4162|consensus | 799 | 99.4 | ||
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.4 | |
| KOG0495|consensus | 913 | 99.37 | ||
| PLN02789 | 320 | farnesyltranstransferase | 99.37 | |
| KOG4162|consensus | 799 | 99.37 | ||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 99.36 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.36 | |
| smart00390 | 26 | GoLoco LGN motif, putative GEFs specific for G-alp | 99.36 | |
| PF02188 | 23 | GoLoco: GoLoco motif; InterPro: IPR003109 In heter | 99.35 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 99.33 | |
| KOG1156|consensus | 700 | 99.33 | ||
| KOG0624|consensus | 504 | 99.32 | ||
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 99.3 | |
| KOG2300|consensus | 629 | 99.3 | ||
| PF02188 | 23 | GoLoco: GoLoco motif; InterPro: IPR003109 In heter | 99.3 | |
| PLN02789 | 320 | farnesyltranstransferase | 99.29 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.29 | |
| KOG0495|consensus | 913 | 99.24 | ||
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.24 | |
| smart00390 | 26 | GoLoco LGN motif, putative GEFs specific for G-alp | 99.23 | |
| KOG1127|consensus | 1238 | 99.19 | ||
| PLN03077 | 857 | Protein ECB2; Provisional | 99.18 | |
| KOG2376|consensus | 652 | 99.17 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.17 | |
| KOG1156|consensus | 700 | 99.17 | ||
| KOG3785|consensus | 557 | 99.14 | ||
| KOG1127|consensus | 1238 | 99.14 | ||
| KOG1128|consensus | 777 | 99.09 | ||
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 99.09 | |
| KOG0553|consensus | 304 | 99.09 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.08 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.07 | |
| KOG1585|consensus | 308 | 99.05 | ||
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 99.04 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.04 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 99.03 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 99.0 | |
| KOG3617|consensus | 1416 | 99.0 | ||
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.99 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.98 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.94 | |
| KOG1128|consensus | 777 | 98.94 | ||
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.93 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 98.93 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.92 | |
| KOG2376|consensus | 652 | 98.92 | ||
| KOG2300|consensus | 629 | 98.91 | ||
| KOG3785|consensus | 557 | 98.9 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.87 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.86 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.85 | |
| KOG1585|consensus | 308 | 98.85 | ||
| KOG4340|consensus | 459 | 98.85 | ||
| KOG1586|consensus | 288 | 98.84 | ||
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.84 | |
| KOG1586|consensus | 288 | 98.83 | ||
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 98.82 | |
| KOG3060|consensus | 289 | 98.82 | ||
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.81 | |
| KOG3617|consensus | 1416 | 98.8 | ||
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 98.78 | |
| KOG0553|consensus | 304 | 98.78 | ||
| KOG4340|consensus | 459 | 98.77 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.77 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.77 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 98.77 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.76 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.75 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.73 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 98.73 | |
| KOG2047|consensus | 835 | 98.73 | ||
| KOG3060|consensus | 289 | 98.72 | ||
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 98.72 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 98.72 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 98.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.69 | |
| KOG1915|consensus | 677 | 98.67 | ||
| KOG1915|consensus | 677 | 98.66 | ||
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.64 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 98.63 | |
| KOG2047|consensus | 835 | 98.63 | ||
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.57 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 98.55 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.54 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.53 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.52 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.52 | |
| KOG2471|consensus | 696 | 98.51 | ||
| KOG1463|consensus | 411 | 98.49 | ||
| KOG1464|consensus | 440 | 98.48 | ||
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.46 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.41 | |
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 98.4 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.38 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 98.38 | |
| KOG3616|consensus | 1636 | 98.37 | ||
| KOG0543|consensus | 397 | 98.37 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.36 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 98.36 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 98.35 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.35 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 98.34 | |
| KOG0543|consensus | 397 | 98.34 | ||
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.34 | |
| KOG1464|consensus | 440 | 98.3 | ||
| KOG3616|consensus | 1636 | 98.3 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.3 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 98.26 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 98.26 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.26 | |
| KOG4234|consensus | 271 | 98.26 | ||
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.25 | |
| KOG2471|consensus | 696 | 98.25 | ||
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 98.24 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 98.23 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 98.23 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 98.23 | |
| KOG4555|consensus | 175 | 98.19 | ||
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 98.17 | |
| KOG1070|consensus | 1710 | 98.16 | ||
| PRK15331 | 165 | chaperone protein SicA; Provisional | 98.16 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 98.16 | |
| KOG1070|consensus | 1710 | 98.13 | ||
| PRK11906 | 458 | transcriptional regulator; Provisional | 98.13 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 98.11 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.09 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 98.07 | |
| KOG1463|consensus | 411 | 98.06 | ||
| KOG4234|consensus | 271 | 98.05 | ||
| KOG4555|consensus | 175 | 98.04 | ||
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 98.03 | |
| KOG4648|consensus | 536 | 98.02 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 98.02 | |
| KOG2796|consensus | 366 | 97.97 | ||
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.95 | |
| KOG3081|consensus | 299 | 97.93 | ||
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 97.92 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.92 | |
| KOG4642|consensus | 284 | 97.92 | ||
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.9 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 97.87 | |
| KOG3081|consensus | 299 | 97.87 | ||
| COG5159 | 421 | RPN6 26S proteasome regulatory complex component [ | 97.86 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.86 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.83 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 97.8 | |
| KOG2610|consensus | 491 | 97.79 | ||
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.79 | |
| KOG0551|consensus | 390 | 97.78 | ||
| KOG2796|consensus | 366 | 97.75 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.7 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.68 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.68 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 97.65 | |
| KOG0545|consensus | 329 | 97.6 | ||
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.59 | |
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.58 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 97.56 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.55 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.53 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.5 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 97.49 | |
| KOG4648|consensus | 536 | 97.48 | ||
| PF12862 | 94 | Apc5: Anaphase-promoting complex subunit 5 | 97.48 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 97.42 | |
| PF12968 | 144 | DUF3856: Domain of Unknown Function (DUF3856); Int | 97.42 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.4 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 97.39 | |
| KOG2610|consensus | 491 | 97.37 | ||
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 97.37 | |
| KOG4322|consensus | 482 | 97.36 | ||
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 97.34 | |
| KOG3783|consensus | 546 | 97.33 | ||
| KOG0551|consensus | 390 | 97.33 | ||
| KOG2053|consensus | 932 | 97.31 | ||
| KOG2053|consensus | 932 | 97.29 | ||
| KOG4322|consensus | 482 | 97.25 | ||
| KOG3783|consensus | 546 | 97.2 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.19 | |
| KOG2581|consensus | 493 | 97.15 | ||
| KOG4642|consensus | 284 | 97.1 | ||
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 97.09 | |
| KOG1550|consensus | 552 | 97.09 | ||
| KOG1839|consensus | 1236 | 97.04 | ||
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 97.04 | |
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 97.03 | |
| KOG2581|consensus | 493 | 97.02 | ||
| PF06552 | 186 | TOM20_plant: Plant specific mitochondrial import r | 97.01 | |
| KOG1839|consensus | 1236 | 96.98 | ||
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 96.97 | |
| PF11817 | 247 | Foie-gras_1: Foie gras liver health family 1; Inte | 96.97 | |
| KOG1550|consensus | 552 | 96.96 | ||
| PF09986 | 214 | DUF2225: Uncharacterized protein conserved in bact | 96.91 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.84 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.84 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 96.8 | |
| COG2976 | 207 | Uncharacterized protein conserved in bacteria [Fun | 96.78 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.71 | |
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 96.61 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 96.6 | |
| KOG2041|consensus | 1189 | 96.55 | ||
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 96.54 | |
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 96.54 | |
| KOG0545|consensus | 329 | 96.51 | ||
| KOG4507|consensus | 886 | 96.5 | ||
| KOG0376|consensus | 476 | 96.37 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.36 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.36 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.34 | |
| KOG4814|consensus | 872 | 96.32 | ||
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 96.3 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.24 | |
| KOG0985|consensus | 1666 | 96.2 | ||
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.19 | |
| KOG0687|consensus | 393 | 96.15 | ||
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.04 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 96.02 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 95.96 | |
| KOG1308|consensus | 377 | 95.88 | ||
| PF08626 | 1185 | TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC | 95.88 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.86 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.82 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.82 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 95.82 | |
| COG0790 | 292 | FOG: TPR repeat, SEL1 subfamily [General function | 95.68 | |
| KOG0687|consensus | 393 | 95.57 | ||
| COG5187 | 412 | RPN7 26S proteasome regulatory complex component, | 95.43 | |
| KOG0890|consensus | 2382 | 95.35 | ||
| KOG0985|consensus | 1666 | 95.28 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 95.27 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 95.22 | |
| PF10579 | 80 | Rapsyn_N: Rapsyn N-terminal myristoylation and lin | 95.17 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 95.15 | |
| PF12739 | 414 | TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex | 95.08 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 94.79 | |
| KOG1914|consensus | 656 | 94.65 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.41 | |
| KOG4814|consensus | 872 | 94.4 | ||
| KOG1538|consensus | 1081 | 94.38 | ||
| PF04910 | 360 | Tcf25: Transcriptional repressor TCF25; InterPro: | 94.22 | |
| KOG0686|consensus | 466 | 94.22 | ||
| PF04781 | 111 | DUF627: Protein of unknown function (DUF627); Inte | 94.06 | |
| PRK13184 | 932 | pknD serine/threonine-protein kinase; Reviewed | 93.83 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.83 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 93.67 | |
| KOG0686|consensus | 466 | 93.61 | ||
| KOG1308|consensus | 377 | 93.44 | ||
| KOG0376|consensus | 476 | 93.38 | ||
| KOG2908|consensus | 380 | 93.36 | ||
| KOG0890|consensus | 2382 | 93.22 | ||
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.17 | |
| KOG1538|consensus | 1081 | 92.99 | ||
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 92.98 | |
| KOG4014|consensus | 248 | 92.92 | ||
| KOG4014|consensus | 248 | 92.87 | ||
| KOG2041|consensus | 1189 | 92.78 | ||
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 92.7 | |
| KOG1497|consensus | 399 | 92.6 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 92.47 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.26 | |
| KOG3824|consensus | 472 | 92.05 | ||
| KOG4507|consensus | 886 | 91.96 | ||
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.58 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 91.28 | |
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 91.08 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.76 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 90.48 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 90.14 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 90.04 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 89.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 89.52 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 89.48 | |
| PF10516 | 38 | SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat | 89.34 | |
| KOG2114|consensus | 933 | 88.77 | ||
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 88.74 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 88.58 | |
| PF04190 | 260 | DUF410: Protein of unknown function (DUF410) ; Int | 88.15 | |
| KOG2561|consensus | 568 | 88.05 | ||
| PF08424 | 321 | NRDE-2: NRDE-2, necessary for RNA interference; In | 87.88 | |
| KOG2114|consensus | 933 | 87.73 | ||
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 87.51 | |
| KOG1497|consensus | 399 | 87.33 | ||
| PF00244 | 236 | 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14 | 87.13 | |
| KOG2908|consensus | 380 | 86.78 | ||
| smart00101 | 244 | 14_3_3 14-3-3 homologues. 14-3-3 homologues mediat | 86.38 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 85.36 | |
| PF10952 | 140 | DUF2753: Protein of unknown function (DUF2753); In | 85.27 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 84.89 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.81 | |
| PF14561 | 90 | TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S | 84.58 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 84.05 | |
| KOG3364|consensus | 149 | 83.97 | ||
| PF15015 | 569 | NYD-SP12_N: Spermatogenesis-associated, N-terminal | 83.87 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.73 | |
| KOG2460|consensus | 593 | 83.39 | ||
| PF05053 | 618 | Menin: Menin; InterPro: IPR007747 MEN1, the gene r | 83.07 | |
| KOG3824|consensus | 472 | 82.53 | ||
| TIGR03504 | 44 | FimV_Cterm FimV C-terminal domain. This protein is | 82.53 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 82.13 | |
| KOG2561|consensus | 568 | 81.9 | ||
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 81.72 | |
| PF09670 | 379 | Cas_Cas02710: CRISPR-associated protein (Cas_Cas02 | 81.43 | |
| KOG3364|consensus | 149 | 80.74 | ||
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 80.64 |
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-91 Score=665.92 Aligned_cols=563 Identities=55% Similarity=0.860 Sum_probs=492.9
Q ss_pred CcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 16 ADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95 (609)
Q Consensus 16 ~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d 95 (609)
+.+..+|++++++|+.+|+.|++...+.+|+.|++.+++|..++..+|.+||++|+++++|++|++|...-+.+++.++|
T Consensus 11 ~~q~~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgd 90 (639)
T KOG1130|consen 11 YMQDRSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGD 90 (639)
T ss_pred hhhhhHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcc
Confidence 44566799999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
..+.+++..+||+++..+|.|++|+.++.+.+.++++++|....+++++++|++|...|+..+.....+.+.+++++...
T Consensus 91 klGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 91 KLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred hhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888877889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
++.|.++|...+++.+..+|....++++.+||+.|+.+|+|+.|+.+.+..+.+++++++.....+++.++|++|+.+|+
T Consensus 171 l~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~ 250 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGN 250 (639)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
++.|+++|+.++.++.++++....+..++.||+.|....++++||.|+.+.+.|+++++++.+..+++|.||..|..+|.
T Consensus 251 fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~ 330 (639)
T KOG1130|consen 251 FELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGE 330 (639)
T ss_pred cHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchhhhhhhccc-CCCCCCCCCCcchhhhccccc
Q psy10738 336 HEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYAN-ANQPSPGVRRYNRVRRSSMEQ 414 (609)
Q Consensus 336 ~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 414 (609)
+++|+.+.++++++..+++++.++.+++.+|.++...+|.++.-..+ ....+++... ...+..+. .++.-+|++|++
T Consensus 331 h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~-te~~i~s~a~~~~as~ng~-~~~~grR~sme~ 408 (639)
T KOG1130|consen 331 HRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDD-TELIIDSSADPAPASINGV-HPKLGRRESMET 408 (639)
T ss_pred HHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCc-HHHHhhccCCCCCcccccc-ccchhhHHHHHH
Confidence 99999999999999999999999999999999999999998774443 3333333322 22222333 455568999999
Q ss_pred ccccccCCCccCCCCCCCCCCCCCCCCccchHHHHHhhhccCCCcccccCcccc-cCCCccccc----------------
Q psy10738 415 LDLIKLTPENKGKQSGSSNSSELSKCDEEESFFELLSRFQSERMDDQRCSLSAR-QSENKENLQ---------------- 477 (609)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~ll~~~q~~rmddqr~~~~~~-~~~~~~~~~---------------- 477 (609)
++++|.||++...-+..+-.........++.|||+|+++||+||||||||.... |....+...
T Consensus 409 ~~l~k~tpdk~~n~~ee~La~q~~~kak~~~ff~ml~rlqsKrm~dQr~s~sv~~pn~~~~v~~~~t~~~~~~~l~s~~q 488 (639)
T KOG1130|consen 409 YFLKKNTPDKPVNTPEEPLAEQRYEKAKPSAFFDMLARLQSKRMNDQRVSASVLSPNLDFRVRQVDTEPDNSSTLGSEVQ 488 (639)
T ss_pred HHHHhcCCCCccCCchhhhhhhhhhhcCchHHHHHHHHHhhccccchhccccccCcCccccccccccCCCcchhhHHHHH
Confidence 999999999865332211111122345668899999999999999999998865 211110000
Q ss_pred ---------------ccCCCCCCC---CCC-CCCCCCCCCCCCCchHHHHHHhhhcccchhhhhcCCCCCCC---CCCCC
Q psy10738 478 ---------------RITNTKKSQ---PSA-PRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLADR---ENAIP 535 (609)
Q Consensus 478 ---------------~~~~~~~~~---~~~-~~~~~~~~~~~~~~~~~~~l~~~Q~~R~~~qr~~~~~~~~~---~~~~~ 535 (609)
.++..|..+ +.+ ..-+..+...|.+|+|+||||+|||+||||||+.+|++.+. +..++
T Consensus 489 ~~l~~d~~~~~~~k~~~~a~p~~~~~gp~~ll~~st~p~~~p~~d~fld~Lmr~Qg~RLdeQRSeLP~~~~tm~~~~ee~ 568 (639)
T KOG1130|consen 489 IDLLLDAQGRRMDKQRAPALPGLNPNGPIILLRLSTDPGNEPLDDHFLDWLMRVQGERLDEQRSELPPIKPTMTNGQEEV 568 (639)
T ss_pred HHHhhccccCccccCCCCCCCCCCCCCCceeeeccCCCCCCCChHHHHHHHHHhhhhhhhhhhhcCCCCCCccCCccccC
Confidence 000011111 111 11223333468889999999999999999999999987654 77889
Q ss_pred CchHHHHHHHhhhcchhhhcccCC---CCCCCCCchhHHHHHHHhhccccchhcccCC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHLP---QEGSTVPDEDFFSLITRLQSGRMEDQRATVP 590 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 590 (609)
|.|||+++++| +|| .+|||||||||||||||||+|||||||+.+|
T Consensus 569 d~~~~d~~v~~----------ap~~~t~~g~tvpdeDffslimr~Q~gRmedQRa~lp 616 (639)
T KOG1130|consen 569 DKDFFDILVKC----------APPPKTEEGPTVPDEDFFSLIMRMQAGRMEDQRAHLP 616 (639)
T ss_pred Cchhhhhhccc----------CCCcccCCCCCCCchHHHHHHHHHhhcchhhhhhcCC
Confidence 99999999999 444 6899999999999999999999999999999
|
|
| >KOG1130|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=407.02 Aligned_cols=510 Identities=26% Similarity=0.373 Sum_probs=394.9
Q ss_pred hhHhhhcCCCcchhHHHHHHHH----------------HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHH
Q psy10738 7 SSSDSQSGGADGGNMCLELALE----------------GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGN 68 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~~----------------g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~ 68 (609)
|.-+.+.|+.+..+.++..+++ |..|+..++|.+|+++-..-+.+. -+|....+..--+||+
T Consensus 24 GERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLGN 103 (639)
T KOG1130|consen 24 GERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLGN 103 (639)
T ss_pred HHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhccccccccccc
Confidence 6778889999988888876665 777888888888888766554432 2344444566788999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK--------------------YDEAMVCCKRHLE 128 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~al~ 128 (609)
.+...|.|++|+.++.+-+.++++++|......+++++|++|...|+ ++.|.++|..-++
T Consensus 104 tlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~ 183 (639)
T KOG1130|consen 104 TLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLE 183 (639)
T ss_pred hhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999886 6789999999999
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 129 ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208 (609)
Q Consensus 129 l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 208 (609)
+...++|.....+++.+||+.|+.+|+ |+.|+.+.+.-+.+.++.+|....-+++.|+|+
T Consensus 184 l~~~lgDr~aqGRa~GnLGNTyYlLGd--------------------f~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN 243 (639)
T KOG1130|consen 184 LSEKLGDRLAQGRAYGNLGNTYYLLGD--------------------FDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGN 243 (639)
T ss_pred HHHHhhhHHhhcchhcccCceeeeecc--------------------HHHHHHHHHHHHHHHHHhhhHHHHHHhhcccch
Confidence 999999999999999999999999999 999999999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
+|..+|+++.|+++|+.++.++.+.++....+...+.||+.|....++++|+.|+.+-+.+++++++......+|+.||.
T Consensus 244 ~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgn 323 (639)
T KOG1130|consen 244 CHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGN 323 (639)
T ss_pred hhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH-----HHHcC-CCchHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI-----SKQLG-DPLGQVTA 362 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l-----~~~~~-~~~~~~~a 362 (609)
.|...|..++|+.+.++++++..++++..+...+..+|...-..+|..+.-..-.+..+.- ...++ ..+... -
T Consensus 324 a~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~ds~~~~te~~i~s~a~~~~as~ng~~~~~g-r 402 (639)
T KOG1130|consen 324 AFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQEDSLVDDTELIIDSSADPAPASINGVHPKLG-R 402 (639)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCCcccCCcHHHHhhccCCCCCccccccccchh-h
Confidence 9999999999999999999999999999999999999999999998765422222221111 01111 011111 1
Q ss_pred HHHHHHHHHHcCCCCCCCCCchhhhhhhcccCCCCCCCCCCcchhhhcccccccc-cccC-CCccCCC------------
Q psy10738 363 QMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDL-IKLT-PENKGKQ------------ 428 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~------------ 428 (609)
+..+-.......-++.-..|....+.........++..++...+.+.+.|...++ .+.. |...++-
T Consensus 403 R~sme~~~l~k~tpdk~~n~~ee~La~q~~~kak~~~ff~ml~rlqsKrm~dQr~s~sv~~pn~~~~v~~~~t~~~~~~~ 482 (639)
T KOG1130|consen 403 RESMETYFLKKNTPDKPVNTPEEPLAEQRYEKAKPSAFFDMLARLQSKRMNDQRVSASVLSPNLDFRVRQVDTEPDNSST 482 (639)
T ss_pred HHHHHHHHHHhcCCCCccCCchhhhhhhhhhhcCchHHHHHHHHHhhccccchhccccccCcCccccccccccCCCcchh
Confidence 1112222222223344343444444434333333333444566777777777666 2322 2221000
Q ss_pred -----------------------CCCCCCC---C--------C-CCCCccchHHHHHhhhccCCCcccccCcccccCCCc
Q psy10738 429 -----------------------SGSSNSS---E--------L-SKCDEEESFFELLSRFQSERMDDQRCSLSARQSENK 473 (609)
Q Consensus 429 -----------------------~~~~~~~---~--------~-~~~~~~~~f~~ll~~~q~~rmddqr~~~~~~~~~~~ 473 (609)
+..+... + . ...+.+|+|+|+|.|+||+|+||||..|+...
T Consensus 483 l~s~~q~~l~~d~~~~~~~k~~~~a~p~~~~~gp~~ll~~st~p~~~p~~d~fld~Lmr~Qg~RLdeQRSeLP~~~---- 558 (639)
T KOG1130|consen 483 LGSEVQIDLLLDAQGRRMDKQRAPALPGLNPNGPIILLRLSTDPGNEPLDDHFLDWLMRVQGERLDEQRSELPPIK---- 558 (639)
T ss_pred hHHHHHHHHhhccccCccccCCCCCCCCCCCCCCceeeeccCCCCCCCChHHHHHHHHHhhhhhhhhhhhcCCCCC----
Confidence 0000000 0 0 12457789999999999999999996665110
Q ss_pred ccccccCCCCCCCCCCCCCCCCCCCCCCCchHHHHHHhhhcccchhhhhcCCCCCCCCCCCCCchHHHHHHHhhhcchhh
Q psy10738 474 ENLQRITNTKKSQPSAPRATTIPAHTPGDDDLLDMIVGLQSKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLED 553 (609)
Q Consensus 474 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~Q~~R~~~qr~~~~~~~~~~~~~~~~~~~~~~~~~q~~r~~~ 553 (609)
...+....+++++|||++++| .+|+-...+|++||||||++|||+|++||||
T Consensus 559 ------------------~tm~~~~ee~d~~~~d~~v~~----------ap~~~t~~g~tvpdeDffslimr~Q~gRmed 610 (639)
T KOG1130|consen 559 ------------------PTMTNGQEEVDKDFFDILVKC----------APPPKTEEGPTVPDEDFFSLIMRMQAGRMED 610 (639)
T ss_pred ------------------CccCCccccCCchhhhhhccc----------CCCcccCCCCCCCchHHHHHHHHHhhcchhh
Confidence 112223357889999999999 3333336789999999999999999999999
Q ss_pred hcccCCCCCCCCCchhH
Q psy10738 554 QRSHLPQEGSTVPDEDF 570 (609)
Q Consensus 554 qr~~~~~~~~~~~~~~~ 570 (609)
||..+|. -||-.+.||
T Consensus 611 QRa~lp~-r~~n~n~d~ 626 (639)
T KOG1130|consen 611 QRAHLPN-RPTNKNTDF 626 (639)
T ss_pred hhhcCCC-CCCCCCccc
Confidence 9999994 344555666
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-33 Score=282.41 Aligned_cols=313 Identities=24% Similarity=0.278 Sum_probs=269.9
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+.++|.++...|+...|..|+..+++ |..+-..|...+|..+|.+|++..|. .+.+|.+||.++
T Consensus 153 ~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~----fAiawsnLg~~f 228 (966)
T KOG4626|consen 153 YINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPC----FAIAWSNLGCVF 228 (966)
T ss_pred HhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCc----eeeeehhcchHH
Confidence 45566666666666666666655554 66666667777777777777776664 356788999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...|+...|+.+|++|+++ +|....+|++||++|...+.|++|+.+|.+|+.+.+ ..+.++.++|.+|
T Consensus 229 ~~~Gei~~aiq~y~eAvkl------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrp------n~A~a~gNla~iY 296 (966)
T KOG4626|consen 229 NAQGEIWLAIQHYEEAVKL------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLRP------NHAVAHGNLACIY 296 (966)
T ss_pred hhcchHHHHHHHHHHhhcC------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcCC------cchhhccceEEEE
Confidence 9999999999999999998 889999999999999999999999999999998877 7788999999999
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
+.+|. .+-|+..|++++++ .+....+|.|+|+.+...|+..+|..+|.+++.+.
T Consensus 297 yeqG~--------------------ldlAI~~Ykral~~------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~ 350 (966)
T KOG4626|consen 297 YEQGL--------------------LDLAIDTYKRALEL------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC 350 (966)
T ss_pred ecccc--------------------HHHHHHHHHHHHhc------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC
Confidence 99999 99999999999988 55566799999999999999999999999999998
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+...+ +.+|||++|..+|.+++|...|++++++.+.. +.++.+||.+|..+|++++|+.+|++++.|.
T Consensus 351 p~had------am~NLgni~~E~~~~e~A~~ly~~al~v~p~~------aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~ 418 (966)
T KOG4626|consen 351 PNHAD------AMNNLGNIYREQGKIEEATRLYLKALEVFPEF------AAAHNNLASIYKQQGNLDDAIMCYKEALRIK 418 (966)
T ss_pred CccHH------HHHHHHHHHHHhccchHHHHHHHHHHhhChhh------hhhhhhHHHHHHhcccHHHHHHHHHHHHhcC
Confidence 88777 89999999999999999999999999999885 8889999999999999999999999999987
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+. .+.++.++|..|..+|+...|+.+|.+|+.+. +..++|+.+||.+|+..|+...|+.
T Consensus 419 P~------fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~n------Pt~AeAhsNLasi~kDsGni~~AI~ 477 (966)
T KOG4626|consen 419 PT------FADALSNMGNTYKEMGDVSAAIQCYTRAIQIN------PTFAEAHSNLASIYKDSGNIPEAIQ 477 (966)
T ss_pred ch------HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcC------cHHHHHHhhHHHHhhccCCcHHHHH
Confidence 76 46699999999999999999999999999876 7888999999999999999877664
|
|
| >KOG4626|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-33 Score=277.43 Aligned_cols=314 Identities=24% Similarity=0.263 Sum_probs=289.9
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
++.|+|.+|...|+.+.|+..|..+.+ |.++...|+.+.|..+|..|++++|.. .-+...+|+.
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l----~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDL----YCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcch----hhhhcchhHH
Confidence 467899999999999999988877665 778889999999999999999999875 3477889999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
+...|...+|..+|.+|++. .+..+.+|.+||-++...|+...|+.+|++|+.+.+ ....+|++||++
T Consensus 194 lka~Grl~ea~~cYlkAi~~------qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP------~f~dAYiNLGnV 261 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIET------QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDP------NFLDAYINLGNV 261 (966)
T ss_pred HHhhcccchhHHHHHHHHhh------CCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCC------cchHHHhhHHHH
Confidence 99999999999999999998 788899999999999999999999999999999887 777899999999
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
|...+. |+.|+..|.+|+.+ .+..+.++.|+|.+|+.+|..+-|+..|++++++
T Consensus 262 ~ke~~~--------------------~d~Avs~Y~rAl~l------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~ 315 (966)
T KOG4626|consen 262 YKEARI--------------------FDRAVSCYLRALNL------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL 315 (966)
T ss_pred HHHHhc--------------------chHHHHHHHHHHhc------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc
Confidence 999999 99999999999988 7788899999999999999999999999999999
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 230 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 309 (609)
.+.+.+ +|.|+|+++-..|+..+|..+|.+++.+.+.. +.+.++||++|..+|.+++|..+|.+++++
T Consensus 316 ~P~F~~------Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~h------adam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 316 QPNFPD------AYNNLANALKDKGSVTEAVDCYNKALRLCPNH------ADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred CCCchH------HHhHHHHHHHhccchHHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 888887 99999999999999999999999999998874 889999999999999999999999999999
Q ss_pred HHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 310 AQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 310 ~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.+. .+.++.+||.+|..+|++++|+.+|++|+.|. +..+.++.++|..|+.+|+...|+.
T Consensus 384 ~p~------~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~------P~fAda~~NmGnt~ke~g~v~~A~q 443 (966)
T KOG4626|consen 384 FPE------FAAAHNNLASIYKQQGNLDDAIMCYKEALRIK------PTFADALSNMGNTYKEMGDVSAAIQ 443 (966)
T ss_pred Chh------hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcC------chHHHHHHhcchHHHHhhhHHHHHH
Confidence 887 46699999999999999999999999999987 8889999999999999999887765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.94 E-value=7.4e-25 Score=242.78 Aligned_cols=325 Identities=15% Similarity=0.083 Sum_probs=237.6
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH-----------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE-----------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~-----------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~ 71 (609)
+..+|..+...|+++.|+.+|..++. |.++...|++++|+..+.++++++|++. .+++.+|.+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~----~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYS----KALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHH
Confidence 56789999999999999999987654 7889999999999999999999999874 48899999999
Q ss_pred HhCCHHHHHHHHHHHHHH--------------------------------------------------------------
Q psy10738 72 YLGDYQKAMQYHKQDLTL-------------------------------------------------------------- 89 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~-------------------------------------------------------------- 89 (609)
.+|++++|+..+..+...
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNE 285 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccc
Confidence 999999998765443210
Q ss_pred -------------------------------HHHc----CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 90 -------------------------------ARNM----EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 90 -------------------------------~~~~----~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+... ...+..+.++..+|.++..+|++++|+.++++++++.+
T Consensus 286 ~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P--- 362 (615)
T TIGR00990 286 LDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP--- 362 (615)
T ss_pred cccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---
Confidence 0000 01233445667777777777777788777777777655
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
....++..+|.++...|+ +++|+.++++++++ .+....++.++|.++...|
T Consensus 363 ---~~~~~~~~la~~~~~~g~--------------------~~eA~~~~~~al~~------~p~~~~~~~~lg~~~~~~g 413 (615)
T TIGR00990 363 ---RVTQSYIKRASMNLELGD--------------------PDKAEEDFDKALKL------NSEDPDIYYHRAQLHFIKG 413 (615)
T ss_pred ---CcHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Confidence 445577777888877777 88888888877765 2333567778888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 294 (609)
++++|+.+|++++.+.+... .++.++|.++..+|++++|+..|++++...+.. ..++..+|.++...|
T Consensus 414 ~~~~A~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~~------~~~~~~lg~~~~~~g 481 (615)
T TIGR00990 414 EFAQAGKDYQKSIDLDPDFI------FSHIQLGVTQYKEGSIASSMATFRRCKKNFPEA------PDVYNYYGELLLDQN 481 (615)
T ss_pred CHHHHHHHHHHHHHcCccCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcc
Confidence 88888888888877755432 267778888888888888888888887765542 557777888888888
Q ss_pred CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH-HHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL-GNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~L-a~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
++++|+.+|++++.+.+...........++.. +.++...|++++|+.++++++.+. +....++..+|.++...
T Consensus 482 ~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~------p~~~~a~~~la~~~~~~ 555 (615)
T TIGR00990 482 KFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIID------PECDIAVATMAQLLLQQ 555 (615)
T ss_pred CHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHc
Confidence 88888888888887766533222222222233 333444688888888888888753 34455788899999999
Q ss_pred CCCCCCCC
Q psy10738 374 GMSTNDLS 381 (609)
Q Consensus 374 g~~~~al~ 381 (609)
|+..+|+.
T Consensus 556 g~~~eAi~ 563 (615)
T TIGR00990 556 GDVDEALK 563 (615)
T ss_pred cCHHHHHH
Confidence 99887765
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-23 Score=227.74 Aligned_cols=301 Identities=16% Similarity=0.158 Sum_probs=206.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
+..+...|..++..|+|++|+..|++++...|+ + ..|.++|.+|..+|++++|+..+.+++++ .+....
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~----~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------~p~~~~ 195 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-P----VYYSNRAACHNALGDWEKVVEDTTAALEL------DPDYSK 195 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-h----HHHHHHHHHHHHhCCHHHHHHHHHHHHHc------CCCCHH
Confidence 345666799999999999999999999999985 2 37899999999999999999999999998 788899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--------------------------cCCc-------------------
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ--------------------------LNDK------------------- 136 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~--------------------------~~d~------------------- 136 (609)
+++.+|.+|..+|++++|+..+..+..+... ....
T Consensus 196 a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 275 (615)
T TIGR00990 196 ALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKP 275 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCc
Confidence 9999999999999999999877654321100 0000
Q ss_pred ------------HHHHHHHHHHHHHHH---HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 137 ------------LSEGRALYNLGNVYH---AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201 (609)
Q Consensus 137 ------------~~~~~~~~~lg~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 201 (609)
......+..+|..+. ..+. |++|+.+|++++... ...+..+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~--------------------y~~A~~~~~~al~~~---~~~~~~a~ 332 (615)
T TIGR00990 276 RPAGLEDSNELDEETGNGQLQLGLKSPESKADES--------------------YEEAARAFEKALDLG---KLGEKEAI 332 (615)
T ss_pred chhhhhcccccccccccchHHHHHHHHHhhhhhh--------------------HHHHHHHHHHHHhcC---CCChhhHH
Confidence 000001111221111 1234 777777777777642 11344556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
++..+|.++..+|++++|+.++++++.+.+... .++..+|.++...|++++|+.+|++++.+.+.. ..
T Consensus 333 a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~------~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~------~~ 400 (615)
T TIGR00990 333 ALNLRGTFKCLKGKHLEALADLSKSIELDPRVT------QSYIKRASMNLELGDPDKAEEDFDKALKLNSED------PD 400 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HH
Confidence 677777777777777777777777776654332 266677777777777777777777776654332 45
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVT 361 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~ 361 (609)
+++.+|.++...|++++|+.+|++++.+.+. ...++..+|.++..+|++++|+.++++++... +....
T Consensus 401 ~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~ 468 (615)
T TIGR00990 401 IYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD------FIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPD 468 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChH
Confidence 6677777777777777777777777766543 23356667777777777777777777776654 34456
Q ss_pred HHHHHHHHHHHcCCCCCCC
Q psy10738 362 AQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 362 a~~~la~l~~~~g~~~~al 380 (609)
++..+|.++...|+...|+
T Consensus 469 ~~~~lg~~~~~~g~~~~A~ 487 (615)
T TIGR00990 469 VYNYYGELLLDQNKFDEAI 487 (615)
T ss_pred HHHHHHHHHHHccCHHHHH
Confidence 6666777777777665553
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.6e-21 Score=197.21 Aligned_cols=279 Identities=22% Similarity=0.251 Sum_probs=246.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-- 133 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-- 133 (609)
....+...+|..|...|+|++|+..+++++....+. .+.+..+.....+|.+|..+++|.+|+..|++|+.+....
T Consensus 197 ~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G 276 (508)
T KOG1840|consen 197 ERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFG 276 (508)
T ss_pred hHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 345667779999999999999999999999997544 2455666677789999999999999999999999999876
Q ss_pred CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHH
Q psy10738 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYY 211 (609)
Q Consensus 134 ~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~ 211 (609)
.+.+..+.++.+||.+|...|+ |.+|..++++|++|.++. ...+..+..+.+++.++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GK--------------------f~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~ 336 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGK--------------------FAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQ 336 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCC--------------------hHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHH
Confidence 4567889999999999999999 999999999999999884 456778889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhC--ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFG--DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLG 287 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la 287 (609)
.++++++|+.++++++++..... +....+..+.++|.+|..+|+|++|.++|++|+.+...... .......++.+|
T Consensus 337 ~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 337 SMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred HhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 99999999999999999988532 33467889999999999999999999999999999988754 667788999999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
..|...+++.+|...|.++..|.+..+. .+.....|.+||.+|..+|++++|+++.++++...+..+..
T Consensus 417 ~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~ 486 (508)
T KOG1840|consen 417 EAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGT 486 (508)
T ss_pred HHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999976654 55788899999999999999999999999999887766543
|
|
| >KOG1840|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.1e-20 Score=191.47 Aligned_cols=273 Identities=20% Similarity=0.265 Sum_probs=238.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CC
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAG----TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--ED 95 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~----~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d 95 (609)
.......|..|..+|+|++|+..++.|++.- -.+...++.....+|.+|..+++|.+|+..|++|+.+.+.. .+
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 3344447999999999999999999999871 12333456666779999999999999999999999998866 56
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.+..+.++.+||..|...|+|++|..++++|+++.... ......+..+.+++.++..+++
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~------------------ 340 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE------------------ 340 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc------------------
Confidence 88899999999999999999999999999999999873 3455778889999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD--KAAERRANSNLGNS 249 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~ 249 (609)
+++|..++++++++.... .+++..+..+.++|.+|..+|+|.+|.++|++|+.+.+.... .......+.++|..
T Consensus 341 --~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~ 418 (508)
T KOG1840|consen 341 --YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA 418 (508)
T ss_pred --hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence 999999999999998854 445678999999999999999999999999999999988655 45667799999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
|...+++.+|...|.++..+.+..+ +.+.....|.+||.+|..+|++++|+++.++++.......
T Consensus 419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~ 484 (508)
T KOG1840|consen 419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRL 484 (508)
T ss_pred HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcC
Confidence 9999999999999999999997665 5557788999999999999999999999999998766643
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-21 Score=224.95 Aligned_cols=338 Identities=17% Similarity=0.119 Sum_probs=238.3
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhH----------HHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRT----------LSAI 62 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------~a~~ 62 (609)
.+|.++...|++++|+.++..++. |.++...|++++|+.+|+++++..|++... ....
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~ 353 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWL 353 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHH
Confidence 346777777777777777765544 778888888888888888888877754321 1112
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH-----
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL----- 137 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----- 137 (609)
...+|.++...|++++|+..|++++.+ .+....++..+|.++...|++++|+.+|++++++.+......
T Consensus 354 ~~~~g~~~~~~g~~~eA~~~~~~Al~~------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~ 427 (1157)
T PRK11447 354 LIQQGDAALKANNLAQAERLYQQARQV------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLAN 427 (1157)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 334577777788888888888887777 555667777788888888888888888887776644211100
Q ss_pred -------------------------------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 138 -------------------------------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 138 -------------------------------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
.....+..+|.++...|+ +++|+..|+++
T Consensus 428 l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~--------------------~~eA~~~~~~A 487 (1157)
T PRK11447 428 LYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGK--------------------WAQAAELQRQR 487 (1157)
T ss_pred HHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCC--------------------HHHHHHHHHHH
Confidence 001233456777777887 88888888887
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-----------------------------
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA----------------------------- 237 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~----------------------------- 237 (609)
+++ .+....++..+|.+|...|++++|+..+++++...+......
T Consensus 488 l~~------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~ 561 (1157)
T PRK11447 488 LAL------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWN 561 (1157)
T ss_pred HHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcC
Confidence 776 233345677777778888888888777777766433211000
Q ss_pred ---------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 238 ---------------------------------------AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 238 ---------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
.....+..+|.++...|++++|+..|++++...+..
T Consensus 562 ~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~----- 636 (1157)
T PRK11447 562 SNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGN----- 636 (1157)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 001255678889999999999999999999876653
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG 358 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 358 (609)
..++..+|.+|...|++++|+..+++++...+. ...++..+|.++...|++++|..++++++...........
T Consensus 637 -~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~ 709 (1157)
T PRK11447 637 -ADARLGLIEVDIAQGDLAAARAQLAKLPATAND------SLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSME 709 (1157)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchh
Confidence 668889999999999999999999987765332 3446778999999999999999999999887643332223
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCchhh
Q psy10738 359 QVTAQMNVTDLRKALGMSTNDLSPDSLQ 386 (609)
Q Consensus 359 ~~~a~~~la~l~~~~g~~~~al~~~~~~ 386 (609)
...++..+|.++...|++..|+......
T Consensus 710 ~a~~~~~~a~~~~~~G~~~~A~~~y~~A 737 (1157)
T PRK11447 710 SALVLRDAARFEAQTGQPQQALETYKDA 737 (1157)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4566777899999999988887644443
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-20 Score=207.58 Aligned_cols=324 Identities=14% Similarity=0.039 Sum_probs=227.6
Q ss_pred hhHhhhcCCCcchhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC
Q psy10738 7 SSSDSQSGGADGGNMCLELAL------------EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG 74 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~------------~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g 74 (609)
+....+.|+...|...+...+ .|......|++++|+..|++++..+|++.. ++..+|.++...|
T Consensus 49 ~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~----a~~~la~~l~~~g 124 (656)
T PRK15174 49 AIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPE----DVLLVASVLLKSK 124 (656)
T ss_pred HHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChH----HHHHHHHHHHHcC
Confidence 444556677776666654433 266667778888888888888887777644 6677777878888
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc------------------
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK------------------ 136 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~------------------ 136 (609)
++++|+..+++++.+ .+....++..+|.++...|++++|+..+.+++...+.....
T Consensus 125 ~~~~Ai~~l~~Al~l------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~ 198 (656)
T PRK15174 125 QYATVADLAEQAWLA------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHD 198 (656)
T ss_pred CHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHH
Confidence 888888888887777 56666677777777777777777777777655443211000
Q ss_pred ----------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 137 ----------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206 (609)
Q Consensus 137 ----------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 206 (609)
.........++.++...|+ +++|+..+.+++.. .+....++.++
T Consensus 199 ~~~~~l~~~~~~~~~~~~~l~~~l~~~g~--------------------~~eA~~~~~~al~~------~p~~~~~~~~L 252 (656)
T PRK15174 199 LARALLPFFALERQESAGLAVDTLCAVGK--------------------YQEAIQTGESALAR------GLDGAALRRSL 252 (656)
T ss_pred HHHHHHhcCCCcchhHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHH
Confidence 0000112234455555666 77777777777765 23345677888
Q ss_pred HHHHHHcCCHHH----HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 207 GNTYYLLGNFKQ----AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 207 g~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
|.++...|++++ |+.++++++.+.+... .++.++|.++...|++++|+.++++++.+.+.. ..+
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~------~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~------~~a 320 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQFNSDNV------RIVTLYADALIRTGQNEKAIPLLQQSLATHPDL------PYV 320 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH------HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHH
Confidence 888988998885 7888888888765432 378888999999999999999999988876543 556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
+..+|.++...|++++|+..|++++...+. ....+..+|.++...|++++|+.+|++++++...... .....+
T Consensus 321 ~~~La~~l~~~G~~~eA~~~l~~al~~~P~------~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~~-~~~~ea 393 (656)
T PRK15174 321 RAMYARALRQVGQYTAASDEFVQLAREKGV------TSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHLP-QSFEEG 393 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhch-hhHHHH
Confidence 778899999999999999999888876443 2235556788888999999999999999888665442 344567
Q ss_pred HHHHHHHHHHcCCCCCCCCCchh
Q psy10738 363 QMNVTDLRKALGMSTNDLSPDSL 385 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~~~~~ 385 (609)
...+.+.+...+.+.....|...
T Consensus 394 ~~~~~~~~~~~~~~~~~~~W~~~ 416 (656)
T PRK15174 394 LLALDGQISAVNLPPERLDWAWE 416 (656)
T ss_pred HHHHHHHHHhcCCccchhhHHHH
Confidence 88888888888877655444444
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=7e-21 Score=210.71 Aligned_cols=297 Identities=10% Similarity=0.024 Sum_probs=235.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+..-+..+...|++++|...++.++...|++.. +++.+|.+....|++++|+..+++++.. .|....++.
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~----~l~~l~~~~l~~g~~~~A~~~l~~~l~~------~P~~~~a~~ 114 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRD----LLRRWVISPLASSQPDAVLQVVNKLLAV------NVCQPEDVL 114 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh----HHHHHhhhHhhcCCHHHHHHHHHHHHHh------CCCChHHHH
Confidence 444477889999999999999999999998855 7899999999999999999999999999 788889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++...|++++|+..|++++.+.+ ....++..+|.++...|+ +++|+..+.
T Consensus 115 ~la~~l~~~g~~~~Ai~~l~~Al~l~P------~~~~a~~~la~~l~~~g~--------------------~~eA~~~~~ 168 (656)
T PRK15174 115 LVASVLLKSKQYATVADLAEQAWLAFS------GNSQIFALHLRTLVLMDK--------------------ELQAISLAR 168 (656)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCC--------------------hHHHHHHHH
Confidence 999999999999999999999999866 445678888888888888 666666555
Q ss_pred HHHHHHHH-------------hCC---------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Q psy10738 185 QNLALMKE-------------IND---------------TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236 (609)
Q Consensus 185 ~al~~~~~-------------~~~---------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (609)
+++..... .++ +.........++.++...|++++|+..+++++...+..
T Consensus 169 ~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~--- 245 (656)
T PRK15174 169 TQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDG--- 245 (656)
T ss_pred HHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC---
Confidence 44332100 000 00011123445677777888888888888887764332
Q ss_pred HHHHHHHHHHHHHHHHhCCHHH----HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 237 AAERRANSNLGNSHIFLGEYQA----ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..++.++|.++...|++++ |+.+|++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+.
T Consensus 246 ---~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~ 316 (656)
T PRK15174 246 ---AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------VRIVTLYADALIRTGQNEKAIPLLQQSLATHPD 316 (656)
T ss_pred ---HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC
Confidence 3477889999999999985 789999998877653 678889999999999999999999999987554
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
...++..+|.++...|++++|+..|++++... +....+...++.++...|+.++|+.
T Consensus 317 ------~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~~~~~~~a~al~~~G~~deA~~ 373 (656)
T PRK15174 317 ------LPYVRAMYARALRQVGQYTAASDEFVQLAREK------GVTSKWNRYAAAALLQAGKTSEAES 373 (656)
T ss_pred ------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHCCCHHHHHH
Confidence 34477889999999999999999999888753 3344566667888999999887765
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=217.41 Aligned_cols=317 Identities=21% Similarity=0.244 Sum_probs=225.7
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..++.++...|+.+++..++..+ ..+..+...|++++|+..+++++...|.++. ++..+|.++
T Consensus 536 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~ 611 (899)
T TIGR02917 536 ILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPE----AWLMLGRAQ 611 (899)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH----HHHHHHHHH
Confidence 456777888888888777776544 2377788888888888888888887776643 677888888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------------
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND--------------- 135 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d--------------- 135 (609)
...|++++|+..++++++. .+....++..+|.++...|++++|+.++++++...+....
T Consensus 612 ~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 685 (899)
T TIGR02917 612 LAAGDLNKAVSSFKKLLAL------QPDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRT 685 (899)
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCH
Confidence 8888888888888888776 4555667778888888888888888888887765432100
Q ss_pred -------------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 136 -------------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202 (609)
Q Consensus 136 -------------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 202 (609)
.+....++..+|.++...|+ +++|+..|++++..... . ..
T Consensus 686 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~~~~~~~~---~----~~ 738 (899)
T TIGR02917 686 ESAKKIAKSLQKQHPKAALGFELEGDLYLRQKD--------------------YPAAIQAYRKALKRAPS---S----QN 738 (899)
T ss_pred HHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhCCC---c----hH
Confidence 00122344455666666666 66666666666654211 1 34
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
+.+++.++...|++++|+..+++++...+.. ..+++.+|.+|...|++++|+.+|+++++..+. ...+
T Consensus 739 ~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~------~~~~ 806 (899)
T TIGR02917 739 AIKLHRALLASGNTAEAVKTLEAWLKTHPND------AVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD------NAVV 806 (899)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC------CHHH
Confidence 5566777777777777777777766643322 236777888888888888888888888776543 2556
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
+..+|.++...|+ .+|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++. +....+
T Consensus 807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------~~~~~~ 873 (899)
T TIGR02917 807 LNNLAWLYLELKD-PRALEYAEKALKLAPN------IPAILDTLGWLLVEKGEADRALPLLRKAVNIA------PEAAAI 873 (899)
T ss_pred HHHHHHHHHhcCc-HHHHHHHHHHHhhCCC------CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCChHH
Confidence 7778888888888 7788888888876543 23366788999999999999999999999866 335678
Q ss_pred HHHHHHHHHHcCCCCCCCC
Q psy10738 363 QMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 363 ~~~la~l~~~~g~~~~al~ 381 (609)
+..++.++...|++++|..
T Consensus 874 ~~~l~~~~~~~g~~~~A~~ 892 (899)
T TIGR02917 874 RYHLALALLATGRKAEARK 892 (899)
T ss_pred HHHHHHHHHHcCCHHHHHH
Confidence 8889999999998776643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.8e-19 Score=189.25 Aligned_cols=277 Identities=17% Similarity=0.149 Sum_probs=228.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
...+..|..+...|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++++++... .........+
T Consensus 36 ~~~y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~g~~~~A~~~~~~~l~~~--~~~~~~~~~~ 109 (389)
T PRK11788 36 SRDYFKGLNFLLNEQPDKAIDLFIEMLKVDPETV----ELHLALGNLFRRRGEVDRAIRIHQNLLSRP--DLTREQRLLA 109 (389)
T ss_pred cHHHHHHHHHHhcCChHHHHHHHHHHHhcCcccH----HHHHHHHHHHHHcCcHHHHHHHHHHHhcCC--CCCHHHHHHH
Confidence 3445568899999999999999999999998764 478999999999999999999999887631 1112334568
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
+..+|.+|...|++++|+.+|.++++..+ ....++..++.++...|+ +++|+..
T Consensus 110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~------~~~~~~~~la~~~~~~g~--------------------~~~A~~~ 163 (389)
T PRK11788 110 LQELGQDYLKAGLLDRAEELFLQLVDEGD------FAEGALQQLLEIYQQEKD--------------------WQKAIDV 163 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHcCCc------chHHHHHHHHHHHHHhch--------------------HHHHHHH
Confidence 89999999999999999999999987532 445688899999999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
+++++...... ........+..+|.++...|++++|+.+++++++..+... .++..+|.++...|++++|+.+
T Consensus 164 ~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~la~~~~~~g~~~~A~~~ 236 (389)
T PRK11788 164 AERLEKLGGDS-LRVEIAHFYCELAQQALARGDLDAARALLKKALAADPQCV------RASILLGDLALAQGDYAAAIEA 236 (389)
T ss_pred HHHHHHhcCCc-chHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCH------HHHHHHHHHHHHCCCHHHHHHH
Confidence 99987653221 1123455678899999999999999999999998755432 3788899999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+++++...+. ....++..++.+|...|++++|+.++++++...+.. ..+..++.++...|++++|+..
T Consensus 237 ~~~~~~~~p~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~-------~~~~~la~~~~~~g~~~~A~~~ 304 (389)
T PRK11788 237 LERVEEQDPE-----YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGA-------DLLLALAQLLEEQEGPEAAQAL 304 (389)
T ss_pred HHHHHHHChh-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc-------hHHHHHHHHHHHhCCHHHHHHH
Confidence 9999876443 234567889999999999999999999998874321 2347899999999999999999
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
++++++..
T Consensus 305 l~~~l~~~ 312 (389)
T PRK11788 305 LREQLRRH 312 (389)
T ss_pred HHHHHHhC
Confidence 99999874
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.8e-20 Score=218.42 Aligned_cols=326 Identities=17% Similarity=0.151 Sum_probs=241.7
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh--------hh
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK--------LG 98 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~--------~~ 98 (609)
..|..+...|++++|+..|+++++.+|++.. ++..+|.+|...|++++|+.+|+++++........ ..
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~----a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~ 349 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE----ALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVN 349 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhh
Confidence 4599999999999999999999999998854 88999999999999999999999999876644321 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC------CCCCCCchH-
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ------QDPGEYPEE- 171 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~------~~~~~~~~~- 171 (609)
.......+|.++...|++++|+.+|++++.+.+ ....++..+|.++...|++.++... .+|.. ...
T Consensus 350 ~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~-~~a~ 422 (1157)
T PRK11447 350 RYWLLIQQGDAALKANNLAQAERLYQQARQVDN------TDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGN-TNAV 422 (1157)
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-HHHH
Confidence 334456679999999999999999999999866 3456788889999998887654331 12221 110
Q ss_pred -------hHHhHHHHHHHHHHHHHHHHHh-C--ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 172 -------VKVCLQEAIKYYEQNLALMKEI-N--DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 172 -------~~~~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
....+++|+.++++........ . ........+..+|.++...|++++|+.+|++++++.+... .
T Consensus 423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~------~ 496 (1157)
T PRK11447 423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSV------W 496 (1157)
T ss_pred HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------H
Confidence 0123566766665433222111 0 0122234678899999999999999999999999866543 2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc---------------------------------------------
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR--------------------------------------------- 276 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------------------------------- 276 (609)
+++.+|.+|...|++++|+..+++++...+.....
T Consensus 497 ~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~ 576 (1157)
T PRK11447 497 LTYRLAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQV 576 (1157)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHH
Confidence 78899999999999999999999887753321100
Q ss_pred -----------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 277 -----------------------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 277 -----------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
......+..+|.++...|++++|+..|++++...+. ...++..++.+|...
T Consensus 577 l~~a~~l~~~G~~~eA~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~------~~~a~~~la~~~~~~ 650 (1157)
T PRK11447 577 LETANRLRDSGKEAEAEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG------NADARLGLIEVDIAQ 650 (1157)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHC
Confidence 001124567888888889999999999888887554 345888899999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
|++++|+.+++++++.. +....++..++.++...|++.+|..
T Consensus 651 g~~~eA~~~l~~ll~~~------p~~~~~~~~la~~~~~~g~~~eA~~ 692 (1157)
T PRK11447 651 GDLAAARAQLAKLPATA------NDSLNTQRRVALAWAALGDTAAAQR 692 (1157)
T ss_pred CCHHHHHHHHHHHhccC------CCChHHHHHHHHHHHhCCCHHHHHH
Confidence 99999999988776543 3455677788888888888877654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.1e-20 Score=212.35 Aligned_cols=316 Identities=20% Similarity=0.185 Sum_probs=183.4
Q ss_pred hhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.++..+...|+++++...+... ..|..+...|++++|+.+|+++++..|.+.. ++..+|.++..
T Consensus 436 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~----~~~~la~~~~~ 511 (899)
T TIGR02917 436 LLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFP----AAANLARIDIQ 511 (899)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHH----HHHHHHHHHHH
Confidence 4556666666666666554332 2377777777777777777777777776533 56667777777
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|++++|+..+++++.. .+....++..++.++...|++++|+.++.+++...+ .....+..++.+|..
T Consensus 512 ~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~ 579 (899)
T TIGR02917 512 EGNPDDAIQRFEKVLTI------DPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP------QEIEPALALAQYYLG 579 (899)
T ss_pred CCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchhHHHHHHHHHHH
Confidence 77777777777777665 444555666667777677777777777766655433 222344455555555
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.|+ +++|+.++++++... +....++..+|.++...|++++|+.+|+++++..+.
T Consensus 580 ~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 633 (899)
T TIGR02917 580 KGQ--------------------LKKALAILNEAADAA------PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQPD 633 (899)
T ss_pred CCC--------------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 555 555555555544321 112234555555555555555555555555544322
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----------------------------CcHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG----------------------------DRAVEAQACY 284 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------------------------~~~~~~~~~~ 284 (609)
.. .++..+|.++...|++++|+.+|++++...+... ........+.
T Consensus 634 ~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 707 (899)
T TIGR02917 634 SA------LALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFE 707 (899)
T ss_pred Ch------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHH
Confidence 11 1444455555555555555555555444322210 0001234455
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy10738 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQM 364 (609)
Q Consensus 285 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~ 364 (609)
.+|.++...|++++|+.+|++++...+.. ..+..++.++...|++++|...+++++... +....++.
T Consensus 708 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------~~~~~~~~ 774 (899)
T TIGR02917 708 LEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLKTH------PNDAVLRT 774 (899)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 66677777777777777777766653321 345566777777777777777777766543 34456777
Q ss_pred HHHHHHHHcCCCCCCCC
Q psy10738 365 NVTDLRKALGMSTNDLS 381 (609)
Q Consensus 365 ~la~l~~~~g~~~~al~ 381 (609)
.++.++...|+...|..
T Consensus 775 ~la~~~~~~g~~~~A~~ 791 (899)
T TIGR02917 775 ALAELYLAQKDYDKAIK 791 (899)
T ss_pred HHHHHHHHCcCHHHHHH
Confidence 77777777777666543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.2e-20 Score=193.63 Aligned_cols=294 Identities=17% Similarity=0.160 Sum_probs=175.8
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..+..+.+|......-+..+|+..|++.-...++ ..+++.++|.+|+.+++|++|..+|+.+-.+ .+...
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~klp~h~~n----t~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~------~p~rv 387 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEKLPSHHYN----TGWVLSQLGRAYFELIEYDQAERIFSLVRRI------EPYRV 387 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhcCC----chHHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ccccc
Confidence 3444555577777788889999999994333333 2478999999999999999999999988765 33322
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
+..-....+++.+.+--+--...+..++..+ .....|..+|++|..+++ ++.|+
T Consensus 388 ~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~------~sPesWca~GNcfSLQkd--------------------h~~Ai 441 (638)
T KOG1126|consen 388 KGMEIYSTTLWHLQDEVALSYLAQDLIDTDP------NSPESWCALGNCFSLQKD--------------------HDTAI 441 (638)
T ss_pred cchhHHHHHHHHHHhhHHHHHHHHHHHhhCC------CCcHHHHHhcchhhhhhH--------------------HHHHH
Confidence 2222223333333222221122222222222 334456666666666666 66666
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
++|++|+.+ .+..+.+|..+|.=+....+|+.|..+|++|+.+.+++-. +|+.+|.+|.++++++.|.
T Consensus 442 k~f~RAiQl------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn------AwYGlG~vy~Kqek~e~Ae 509 (638)
T KOG1126|consen 442 KCFKRAIQL------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN------AWYGLGTVYLKQEKLEFAE 509 (638)
T ss_pred HHHHHhhcc------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH------HHHhhhhheeccchhhHHH
Confidence 666666665 3444556666666666666666666666666665554443 6666666666666666666
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
-+|++|+++.+.. ......+|.++.+.|+.++|+.++++|+.+.+.. .-..+..|.++..++++++|+
T Consensus 510 ~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal 577 (638)
T KOG1126|consen 510 FHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKN------PLCKYHRASILFSLGRYVEAL 577 (638)
T ss_pred HHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCC------chhHHHHHHHHHhhcchHHHH
Confidence 6666666665543 3445556666666666666666666666554432 224455566666666666666
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
..+++..++. +.+..++..+|.+|..+|+...|+
T Consensus 578 ~~LEeLk~~v------P~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 578 QELEELKELV------PQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred HHHHHHHHhC------cchHHHHHHHHHHHHHHccchHHH
Confidence 6666655555 556666666666666666655544
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=165.73 Aligned_cols=333 Identities=18% Similarity=0.282 Sum_probs=293.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.....|..++...++++|+..+.+.+..-.+ .......|-.+..+...+|.|++++.+.-..+..+....|......++
T Consensus 8 ~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~-~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~ 86 (518)
T KOG1941|consen 8 KQIEKGLQLYQSNQTEKALQVWTKVLEKLSD-LMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAY 86 (518)
T ss_pred HHHHHHHhHhcCchHHHHHHHHHHHHHHHHH-HHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456789999999999999999999876432 233445677788889999999999999999999999999899999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
.+++..+....++.+++.+....+.+-. ......-..+...+|+.+..++. +++++++|
T Consensus 87 lnlar~~e~l~~f~kt~~y~k~~l~lpg-t~~~~~~gq~~l~~~~Ahlgls~--------------------fq~~Lesf 145 (518)
T KOG1941|consen 87 LNLARSNEKLCEFHKTISYCKTCLGLPG-TRAGQLGGQVSLSMGNAHLGLSV--------------------FQKALESF 145 (518)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHhcCCC-CCcccccchhhhhHHHHhhhHHH--------------------HHHHHHHH
Confidence 9999999999999999999887765422 11112334567779999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK----AAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++|++++...+|+.....++..||.++..+.++++|+-+..+|.++....+-. .....+++.++..+..+|..-.|
T Consensus 146 e~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA 225 (518)
T KOG1941|consen 146 EKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDA 225 (518)
T ss_pred HHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccH
Confidence 99999999999999889999999999999999999999999999999886522 23466888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH-
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK- 338 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~- 338 (609)
.++.+++.++.-..++....+.....+|.+|...|+.+.|..-|+.|..+...++++.+...++...|.++....-..+
T Consensus 226 ~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~ 305 (518)
T KOG1941|consen 226 MECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKI 305 (518)
T ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999887766666
Q ss_pred ----HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 339 ----ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 339 ----A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
|+++-++.++++.++|........+..++.+|...|..++
T Consensus 306 ~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~ 349 (518)
T KOG1941|consen 306 CNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDE 349 (518)
T ss_pred cccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhH
Confidence 9999999999999999999999999999999999987543
|
|
| >KOG1126|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=4e-20 Score=189.93 Aligned_cols=266 Identities=18% Similarity=0.194 Sum_probs=223.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH-HHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ-DLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~-al~~~~~~~d~~~~~~a~ 103 (609)
+...|..|+..++|++|.++|+.+-+..|--.+ -.-....+++++.+ +-++.++-+ .++. .+....+|
T Consensus 356 l~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~----~meiyST~LWHLq~-~v~Ls~Laq~Li~~------~~~sPesW 424 (638)
T KOG1126|consen 356 LSQLGRAYFELIEYDQAERIFSLVRRIEPYRVK----GMEIYSTTLWHLQD-EVALSYLAQDLIDT------DPNSPESW 424 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcccccc----chhHHHHHHHHHHh-hHHHHHHHHHHHhh------CCCCcHHH
Confidence 445599999999999999999999998883222 11122334444433 223333332 2232 66778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|++|..+++++.|+++|++|+.+.+ ..+.+|..+|.-+....+ |++|..+|
T Consensus 425 ca~GNcfSLQkdh~~Aik~f~RAiQldp------~faYayTLlGhE~~~~ee--------------------~d~a~~~f 478 (638)
T KOG1126|consen 425 CALGNCFSLQKDHDTAIKCFKRAIQLDP------RFAYAYTLLGHESIATEE--------------------FDKAMKSF 478 (638)
T ss_pred HHhcchhhhhhHHHHHHHHHHHhhccCC------ccchhhhhcCChhhhhHH--------------------HHhHHHHH
Confidence 9999999999999999999999999987 677889999988888888 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
.+|+.+ .+....+|+.+|.+|.++++++.|.-+|++|+++.+.... ....+|.++...|+.++|+.+|
T Consensus 479 r~Al~~------~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv------i~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 479 RKALGV------DPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV------ILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhhhcC------CchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchh------HHhhhhHHHHHhhhhhHHHHHH
Confidence 999988 5667889999999999999999999999999999877654 7888999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
++|+.+.+.. ....+..|.++..++++++|+..+++..++.++ ++.++..+|.+|..+|+.+.|+..|
T Consensus 547 ~~A~~ld~kn------~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~------es~v~~llgki~k~~~~~~~Al~~f 614 (638)
T KOG1126|consen 547 EKAIHLDPKN------PLCKYHRASILFSLGRYVEALQELEELKELVPQ------ESSVFALLGKIYKRLGNTDLALLHF 614 (638)
T ss_pred HHHHhcCCCC------chhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc------hHHHHHHHHHHHHHHccchHHHHhh
Confidence 9999988764 567788999999999999999999999888876 6779999999999999999999999
Q ss_pred HHHHHHHH
Q psy10738 344 TKHLEISK 351 (609)
Q Consensus 344 ~~al~l~~ 351 (609)
.-|.++..
T Consensus 615 ~~A~~ldp 622 (638)
T KOG1126|consen 615 SWALDLDP 622 (638)
T ss_pred HHHhcCCC
Confidence 98888653
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.6e-18 Score=178.60 Aligned_cols=294 Identities=15% Similarity=0.070 Sum_probs=233.5
Q ss_pred hhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q psy10738 4 GNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71 (609)
Q Consensus 4 ~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~ 71 (609)
+.+|..+...|+++.|...+..++. |..+...|++++|+..+++++...+........++..+|.+|.
T Consensus 39 y~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~ 118 (389)
T PRK11788 39 YFKGLNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYL 118 (389)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHH
Confidence 3457777788888888877765554 8889999999999999999998654444444568899999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~ 151 (609)
..|++++|+.+++++++. .+....++..++.++...|++++|+..+.+++...+.. ........+..+|.++.
T Consensus 119 ~~g~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~ 191 (389)
T PRK11788 119 KAGLLDRAEELFLQLVDE------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDS-LRVEIAHFYCELAQQAL 191 (389)
T ss_pred HCCCHHHHHHHHHHHHcC------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHH
Confidence 999999999999999876 45567789999999999999999999999988765422 11234556788999999
Q ss_pred HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
..|+ +++|+.+++++++.. +....++..+|.++...|++++|+.++++++...+
T Consensus 192 ~~~~--------------------~~~A~~~~~~al~~~------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 192 ARGD--------------------LDAARALLKKALAAD------PQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred hCCC--------------------HHHHHHHHHHHHhHC------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 9999 999999999998863 23456788999999999999999999999987643
Q ss_pred HhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 232 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
. ....++..++.+|...|++++|+.++++++...+. ...+..+|.++...|++++|+..+++++...+
T Consensus 246 ~-----~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~-------~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P 313 (389)
T PRK11788 246 E-----YLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG-------ADLLLALAQLLEEQEGPEAAQALLREQLRRHP 313 (389)
T ss_pred h-----hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-------chHHHHHHHHHHHhCCHHHHHHHHHHHHHhCc
Confidence 2 22346788999999999999999999999887543 12347899999999999999999999998754
Q ss_pred HhcchhhHHHHHHHHHHHHHH---cCChHHHHHHHHHHHHH
Q psy10738 312 QLMDRVGEGRACWSLGNAHAA---RGNHEKALYFATKHLEI 349 (609)
Q Consensus 312 ~~~~~~~~~~~~~~La~~~~~---~g~~~~A~~~~~~al~l 349 (609)
+. . .+..+...+.. .|+..+|+..+++.++.
T Consensus 314 ~~------~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 314 SL------R-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGE 347 (389)
T ss_pred CH------H-HHHHHHHHhhhccCCccchhHHHHHHHHHHH
Confidence 31 2 22223333332 56899999999888763
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4e-20 Score=180.45 Aligned_cols=195 Identities=20% Similarity=0.160 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
+++|.+.|++++.- ......+++++|..+..+|+.++|+.+|-+.-.+...... +++.++.+|..+.+
T Consensus 506 ~dka~~~ykeal~n------dasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~e------vl~qianiye~led 573 (840)
T KOG2003|consen 506 LDKAAEFYKEALNN------DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE------VLVQIANIYELLED 573 (840)
T ss_pred HHHHHHHHHHHHcC------chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH------HHHHHHHHHHHhhC
Confidence 56666666655542 3445556666666666666666666666665555443322 56666666666666
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
..+|++++.++..+.+. ...++..||.+|-+.|+-.+|..++-.....++. ..+...+||..|....-
T Consensus 574 ~aqaie~~~q~~slip~------dp~ilskl~dlydqegdksqafq~~ydsyryfp~------nie~iewl~ayyidtqf 641 (840)
T KOG2003|consen 574 PAQAIELLMQANSLIPN------DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPC------NIETIEWLAAYYIDTQF 641 (840)
T ss_pred HHHHHHHHHHhcccCCC------CHHHHHHHHHHhhcccchhhhhhhhhhcccccCc------chHHHHHHHHHHHhhHH
Confidence 66666666666655543 2455666666666666666666666555544443 33456678888888888
Q ss_pred hHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchhhhhhhcccCCCCCCCCCCcchhhhcccccc
Q psy10738 336 HEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQL 415 (609)
Q Consensus 336 ~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 415 (609)
+++|+.||++|.-+. +......+.++.++...|++..|+. .+...+|+..+++
T Consensus 642 ~ekai~y~ekaaliq------p~~~kwqlmiasc~rrsgnyqka~d---------------------~yk~~hrkfpedl 694 (840)
T KOG2003|consen 642 SEKAINYFEKAALIQ------PNQSKWQLMIASCFRRSGNYQKAFD---------------------LYKDIHRKFPEDL 694 (840)
T ss_pred HHHHHHHHHHHHhcC------ccHHHHHHHHHHHHHhcccHHHHHH---------------------HHHHHHHhCccch
Confidence 889999998887654 7788899999999999999877654 3446689999999
Q ss_pred cccccC
Q psy10738 416 DLIKLT 421 (609)
Q Consensus 416 ~~~~~~ 421 (609)
+|+++.
T Consensus 695 dclkfl 700 (840)
T KOG2003|consen 695 DCLKFL 700 (840)
T ss_pred HHHHHH
Confidence 998874
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=7.3e-18 Score=165.85 Aligned_cols=286 Identities=19% Similarity=0.202 Sum_probs=214.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|.+.+...|+++|+..|+...+.+|-... -+....++++...+-.+---..+.+..+ +....+....+|
T Consensus 268 ~A~~~y~~rDfD~a~s~Feei~knDPYRl~----dmdlySN~LYv~~~~skLs~LA~~v~~i------dKyR~ETCCiIa 337 (559)
T KOG1155|consen 268 IAAASYNQRDFDQAESVFEEIRKNDPYRLD----DMDLYSNVLYVKNDKSKLSYLAQNVSNI------DKYRPETCCIIA 337 (559)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHhcCCCcch----hHHHHhHHHHHHhhhHHHHHHHHHHHHh------ccCCccceeeeh
Confidence 366777777888888888887777663221 1112233333333322222222333333 444556677789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+.|...++.++|+.+|++|+++.+ ....+|..+|.-|..+.+ ...|+..|..|+
T Consensus 338 NYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKN--------------------t~AAi~sYRrAv 391 (559)
T KOG1155|consen 338 NYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKN--------------------THAAIESYRRAV 391 (559)
T ss_pred hHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcc--------------------cHHHHHHHHHHH
Confidence 999999999999999999999988 677799999999999999 899999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 267 (609)
++ .+...++|+.||..|..++-+.=|+-+|++|...-+... +.|..||.+|.++++.++|+++|++++
T Consensus 392 di------~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 392 DI------NPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS------RLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred hc------CchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch------HHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 98 566678999999999999999999999999988755433 388899999999999999999999998
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 268 VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR-VGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
..... ...+++.||.+|..++++++|..+|++.++.....+.. .....+...||..+.+.+++++|..|..++
T Consensus 460 ~~~dt------e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~ 533 (559)
T KOG1155|consen 460 LLGDT------EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLV 533 (559)
T ss_pred hcccc------chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 87654 36789999999999999999999999999866443332 224556667999999999999999998887
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
+.-. .....+...+-++...+
T Consensus 534 ~~~~------~e~eeak~LlReir~~~ 554 (559)
T KOG1155|consen 534 LKGE------TECEEAKALLREIRKIQ 554 (559)
T ss_pred hcCC------chHHHHHHHHHHHHHhc
Confidence 7632 33444555555554443
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=5.7e-18 Score=167.55 Aligned_cols=277 Identities=16% Similarity=0.187 Sum_probs=229.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+-.+|..++..|+|++||.+|.+||++.|+.+ ..|.+++-+|...|+|++.++.+.+++++ .|..+.
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~ep----iFYsNraAcY~~lgd~~~Vied~TkALEl------~P~Y~K 184 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEP----IFYSNRAACYESLGDWEKVIEDCTKALEL------NPDYVK 184 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCc----hhhhhHHHHHHHHhhHHHHHHHHHHHhhc------CcHHHH
Confidence 33445569999999999999999999999999874 38899999999999999999999999999 899999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHH------------------HHHHHHH-----H-HcC-C---------------------
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCC------------------KRHLEIS-----R-QLN-D--------------------- 135 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~------------------~~al~l~-----~-~~~-d--------------------- 135 (609)
+++..+..+..+|++++|+.-. ++.+... . ..+ +
T Consensus 185 Al~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~ 264 (606)
T KOG0547|consen 185 ALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHAD 264 (606)
T ss_pred HHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhcccc
Confidence 9999999999999988775432 1111100 0 000 0
Q ss_pred ---------------------------------------------------------cHHHHHHHHHHHHHHHHcccccc
Q psy10738 136 ---------------------------------------------------------KLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 136 ---------------------------------------------------------~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
....+.++...|..++..|+
T Consensus 265 ~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~--- 341 (606)
T KOG0547|consen 265 PKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD--- 341 (606)
T ss_pred ccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC---
Confidence 01224455556666666666
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
+-.|...+.+++++... ....|..+|.+|....+.++-...|.+|..+.+++.+
T Consensus 342 -----------------~~~a~~d~~~~I~l~~~------~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~d--- 395 (606)
T KOG0547|consen 342 -----------------SLGAQEDFDAAIKLDPA------FNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPD--- 395 (606)
T ss_pred -----------------chhhhhhHHHHHhcCcc------cchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCc---
Confidence 77777778887777332 2334889999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 318 (609)
+|+..|.+++-+++|++|+.-|++++.+.++. +..+..++.+.++++.++++...|+.+..-++..
T Consensus 396 ---vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~------~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~----- 461 (606)
T KOG0547|consen 396 ---VYYHRGQMRFLLQQYEEAIADFQKAISLDPEN------AYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC----- 461 (606)
T ss_pred ---hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-----
Confidence 99999999999999999999999999999885 7889999999999999999999999999888774
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
.+++...|+++..++++++|.+.|.+|+++...
T Consensus 462 -~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~ 494 (606)
T KOG0547|consen 462 -PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPR 494 (606)
T ss_pred -chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccc
Confidence 458889999999999999999999999998765
|
|
| >KOG0547|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=169.42 Aligned_cols=310 Identities=14% Similarity=0.079 Sum_probs=231.6
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
.+.+.|.-+.+.|.++.|+.||..++. +-+|...|+|++.++...+|++++|+. +.+++..+.+
T Consensus 117 ~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y----~KAl~RRA~A 192 (606)
T KOG0547|consen 117 ALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDY----VKALLRRASA 192 (606)
T ss_pred HHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHH----HHHHHHHHHH
Confidence 467889999999999999999998776 788999999999999999999999986 5588899999
Q ss_pred HHHhCCHHHHHHHHH------------------HHH--------------------------------------------
Q psy10738 70 YFYLGDYQKAMQYHK------------------QDL-------------------------------------------- 87 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~------------------~al-------------------------------------------- 87 (609)
+-.+|++++|+.... +.|
T Consensus 193 ~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~ 272 (606)
T KOG0547|consen 193 HEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNK 272 (606)
T ss_pred HHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCC
Confidence 999999988875421 111
Q ss_pred ---------------------------HHHHHc------------CC--hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 88 ---------------------------TLARNM------------ED--KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 88 ---------------------------~~~~~~------------~d--~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 126 (609)
..+.+. -| -...+.++...|..++..|++..|...++++
T Consensus 273 ~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~ 352 (606)
T KOG0547|consen 273 SDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAA 352 (606)
T ss_pred CccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHH
Confidence 000000 00 0122566777788888888888888888888
Q ss_pred HHHHHHcCCc----------------------------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 127 LEISRQLNDK----------------------------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 127 l~l~~~~~d~----------------------------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
+.+.+..... +....+|+..|.+++.+++ |++
T Consensus 353 I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q--------------------~e~ 412 (606)
T KOG0547|consen 353 IKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQ--------------------YEE 412 (606)
T ss_pred HhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHH--------------------HHH
Confidence 8776533221 1123456666666666666 888
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|+.-|++++.+ .+..+.++..++.+.+++++++++...|+++...++.... +|...|.++..+++|+.
T Consensus 413 A~aDF~Kai~L------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~E------vy~~fAeiLtDqqqFd~ 480 (606)
T KOG0547|consen 413 AIADFQKAISL------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPE------VYNLFAEILTDQQQFDK 480 (606)
T ss_pred HHHHHHHHhhc------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCch------HHHHHHHHHhhHHhHHH
Confidence 88888888877 5666778888888888888888888888888887777666 88888888889999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
|++.|.+++.+.+........+..+.+-|.+. .-.+++..|+..+.+|+++.++. -.++..||.+..++|+.+
T Consensus 481 A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dpkc------e~A~~tlaq~~lQ~~~i~ 554 (606)
T KOG0547|consen 481 AVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDPKC------EQAYETLAQFELQRGKID 554 (606)
T ss_pred HHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCchH------HHHHHHHHHHHHHHhhHH
Confidence 99999998888776432222222333333222 23478888999988888887663 348999999999999999
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10738 338 KALYFATKHLEISKQL 353 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~ 353 (609)
+|+++|++++.+++..
T Consensus 555 eAielFEksa~lArt~ 570 (606)
T KOG0547|consen 555 EAIELFEKSAQLARTE 570 (606)
T ss_pred HHHHHHHHHHHHHHhH
Confidence 9999999999998654
|
|
| >KOG1155|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.1e-17 Score=164.50 Aligned_cols=292 Identities=16% Similarity=0.147 Sum_probs=233.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.+.++......++++.-++..+.. -|... .+-...|.+.+...++++|+..|+...+. +|....-.-..
T Consensus 233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~----~i~~~~A~~~y~~rDfD~a~s~Feei~kn------DPYRl~dmdly 302 (559)
T KOG1155|consen 233 LKKAYQELHQHEEALQKKERLSSVGFPNSM----YIKTQIAAASYNQRDFDQAESVFEEIRKN------DPYRLDDMDLY 302 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCccH----HHHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcchhHHHH
Confidence 355565666777777777777776 34442 25566788888888899999888887665 44444444555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
.++++...+-.+-.-..+.+..+.+ ........+|+.|...++ .++|+.||++|
T Consensus 303 SN~LYv~~~~skLs~LA~~v~~idK------yR~ETCCiIaNYYSlr~e--------------------HEKAv~YFkRA 356 (559)
T KOG1155|consen 303 SNVLYVKNDKSKLSYLAQNVSNIDK------YRPETCCIIANYYSLRSE--------------------HEKAVMYFKRA 356 (559)
T ss_pred hHHHHHHhhhHHHHHHHHHHHHhcc------CCccceeeehhHHHHHHh--------------------HHHHHHHHHHH
Confidence 5666665554443334444444444 445677788999999998 99999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+++ ++....+|..+|.-|..+.+...|+..|+.|+++.+..-. +|+.+|.+|..++-..=|+-||++|
T Consensus 357 LkL------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------AWYGLGQaYeim~Mh~YaLyYfqkA 424 (559)
T KOG1155|consen 357 LKL------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------AWYGLGQAYEIMKMHFYALYYFQKA 424 (559)
T ss_pred Hhc------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------HHhhhhHHHHHhcchHHHHHHHHHH
Confidence 999 6677789999999999999999999999999999876543 9999999999999999999999999
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
+..-+. ....|..||.+|.++++.++|+++|.+++..... ...+++.||.+|..+++..+|..+|++.
T Consensus 425 ~~~kPn------DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt------e~~~l~~LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 425 LELKPN------DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT------EGSALVRLAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HhcCCC------chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc------chHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 987664 3778999999999999999999999999987544 4569999999999999999999999999
Q ss_pred HHHHHHcCCCch-HHHHHHHHHHHHHHcCCCCCC
Q psy10738 347 LEISKQLGDPLG-QVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 347 l~l~~~~~~~~~-~~~a~~~la~l~~~~g~~~~a 379 (609)
++.....|.... ...+..-||.-....++.+.|
T Consensus 493 v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~A 526 (559)
T KOG1155|consen 493 VEVSELEGEIDDETIKARLFLAEYFKKMKDFDEA 526 (559)
T ss_pred HHHHHhhcccchHHHHHHHHHHHHHHhhcchHHH
Confidence 998766665444 677888899999999988765
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3e-17 Score=174.71 Aligned_cols=315 Identities=18% Similarity=0.212 Sum_probs=206.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--------
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM-------- 93 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-------- 93 (609)
++.++.+|.+.+..|+|..|+.+|+.++..+|.-. +.....+|.|++.+|..+.|+..|.+++++-+..
T Consensus 164 il~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~---aD~rIgig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~ 240 (1018)
T KOG2002|consen 164 ILALLGKARIAYNKKDYRGALKYYKKALRINPACK---ADVRIGIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALG 240 (1018)
T ss_pred hHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccC---CCccchhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHH
Confidence 34455557777777888888888888777776422 2234556677777777777777777777661110
Q ss_pred -----------------------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 94 -----------------------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 94 -----------------------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...+..+.++..|++.++..|+|..+...+..++... ......+..++++|..|
T Consensus 241 ~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~ 317 (1018)
T KOG2002|consen 241 EVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSY 317 (1018)
T ss_pred HHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHH
Confidence 0022334455556666666666666666666555443 12234555666667777
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
+.+|+ |++|..||.+++.... ......+..+|.+|...|+++.|+.+|++.+...
T Consensus 318 Ha~Gd--------------------~ekA~~yY~~s~k~~~-----d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~ 372 (1018)
T KOG2002|consen 318 HAQGD--------------------FEKAFKYYMESLKADN-----DNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL 372 (1018)
T ss_pred Hhhcc--------------------HHHHHHHHHHHHccCC-----CCccccccchhHHHHHhchHHHHHHHHHHHHHhC
Confidence 77776 6677666666665421 1124455666666666777777777766666655
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLG----EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
+.... +...+|.+|...+ ..+.|..++.+++...+. ...+|..+|.++... +...++.+|..|
T Consensus 373 p~~~e------tm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~------d~~a~l~laql~e~~-d~~~sL~~~~~A 439 (1018)
T KOG2002|consen 373 PNNYE------TMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPV------DSEAWLELAQLLEQT-DPWASLDAYGNA 439 (1018)
T ss_pred cchHH------HHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccc------cHHHHHHHHHHHHhc-ChHHHHHHHHHH
Confidence 54433 5555666666554 445555566655554432 367888888887655 444559999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC----chHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP----LGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~----~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+.+....+.. .....+.++|..++..|++.+|..++..|+....+..+. ....+..+++|.++..+++...|..
T Consensus 440 ~d~L~~~~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e 517 (1018)
T KOG2002|consen 440 LDILESKGKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEE 517 (1018)
T ss_pred HHHHHHcCCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHH
Confidence 9888876655 667899999999999999999999999999985533222 2346789999999999998876643
|
|
| >KOG2002|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=2.3e-17 Score=175.59 Aligned_cols=288 Identities=16% Similarity=0.178 Sum_probs=223.8
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~ 117 (609)
+..|+..+.++...++.+| .++..|++.|+..|+|..+..+...++... ......+..++++|.+|..+|+|+
T Consensus 252 ~~~~~~ll~~ay~~n~~nP----~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~e 324 (1018)
T KOG2002|consen 252 YKKGVQLLQRAYKENNENP----VALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFE 324 (1018)
T ss_pred HHHHHHHHHHHHhhcCCCc----HHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHH
Confidence 3344444444444444443 367889999999999999999999988774 235677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH
Q psy10738 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 197 (609)
+|..||.+++...+. .....++.+|.+|...|+ ++.|+.+|++.++. .+
T Consensus 325 kA~~yY~~s~k~~~d-----~~~l~~~GlgQm~i~~~d--------------------le~s~~~fEkv~k~------~p 373 (1018)
T KOG2002|consen 325 KAFKYYMESLKADND-----NFVLPLVGLGQMYIKRGD--------------------LEESKFCFEKVLKQ------LP 373 (1018)
T ss_pred HHHHHHHHHHccCCC-----CccccccchhHHHHHhch--------------------HHHHHHHHHHHHHh------Cc
Confidence 999999999886652 245678899999999999 99999999998887 44
Q ss_pred HHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 198 AQGRACGNLGNTYYLLG----NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
....+...||.+|...+ ..+.|..+..++++..+... .+|..+|.++....-+.. +.+|..|+.+....
T Consensus 374 ~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~------~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~ 446 (1018)
T KOG2002|consen 374 NNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDS------EAWLELAQLLEQTDPWAS-LDAYGNALDILESK 446 (1018)
T ss_pred chHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccH------HHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence 55667888899988876 56778888888877664433 388999988876555555 99999999888876
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR----VGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+.. .-...+.++|..++..|++++|..++..|+..+....+. .......+++|.++..+++++.|...|...+..
T Consensus 447 ~~~-ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke 525 (1018)
T KOG2002|consen 447 GKQ-IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE 525 (1018)
T ss_pred CCC-CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH
Confidence 655 567889999999999999999999999999885432221 233556889999999999999999999988876
Q ss_pred HHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 350 SKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 350 ~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
. ++...++..++-.....+...
T Consensus 526 h------p~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 526 H------PGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred C------chhHHHHHHhhHHHHhccCcH
Confidence 5 677777777774444444433
|
|
| >KOG1941|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.1e-16 Score=150.93 Aligned_cols=304 Identities=17% Similarity=0.214 Sum_probs=263.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.......|.|++++.+--..++.. -++....-.++.+++..+....++.+++.+.+..+.+-.... ...-..++..+
T Consensus 50 ~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~-~~~~gq~~l~~ 128 (518)
T KOG1941|consen 50 VTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRA-GQLGGQVSLSM 128 (518)
T ss_pred hhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCc-ccccchhhhhH
Confidence 566778888888887766665543 345556677899999999999999999999888777621111 12224667779
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|+.+..++.|++++++|++|+.++...+|+.....++..||.+|....+ +++|.-+..+|
T Consensus 129 ~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D--------------------~~Kal~f~~kA 188 (518)
T KOG1941|consen 129 GNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD--------------------YEKALFFPCKA 188 (518)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh--------------------hhHHhhhhHhH
Confidence 9999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHHHHhCC----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 187 LALMKEIND----TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 187 l~~~~~~~~----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
.++....+- ......+++.++..+..+|..-.|.++.+++.+++-..++....+.....+|.+|...|+.+.|..-
T Consensus 189 ~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~r 268 (518)
T KOG1941|consen 189 AELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRR 268 (518)
T ss_pred HHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHH
Confidence 999988752 2334668899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH-----HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT-----AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
|+.|.......++......++...|.++....-..+ |+++-+++++++.+++.+......+..++.+|..+|.-+
T Consensus 269 Ye~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d 348 (518)
T KOG1941|consen 269 YEQAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQD 348 (518)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchh
Confidence 999999999999999999999999999887766666 999999999999999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHc
Q psy10738 338 KALYFATKHLEISKQL 353 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~ 353 (609)
+-..++..+-+...++
T Consensus 349 ~~~~h~~ra~~~~~e~ 364 (518)
T KOG1941|consen 349 ELRAHVVRAHECVEET 364 (518)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 8888888877665443
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.3e-17 Score=166.35 Aligned_cols=287 Identities=20% Similarity=0.234 Sum_probs=240.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
-+..+++.++..++|.+..+..+..++.+|-++.. .-..+| ++..+|+..+=...-.+.++. .|..+..|
T Consensus 246 ll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~---~~~~ia-~l~el~~~n~Lf~lsh~LV~~------yP~~a~sW 315 (611)
T KOG1173|consen 246 LLAEKADRLYYGCRFKECLKITEELLEKDPFHLPC---LPLHIA-CLYELGKSNKLFLLSHKLVDL------YPSKALSW 315 (611)
T ss_pred HHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcch---HHHHHH-HHHHhcccchHHHHHHHHHHh------CCCCCcch
Confidence 34456999999999999999999999999977653 234566 777888876655555555555 78888999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
+..|..|...|++.+|..+|.++-.+.+ ..+.+|...|..|...|+ .++|+..|
T Consensus 316 ~aVg~YYl~i~k~seARry~SKat~lD~------~fgpaWl~fghsfa~e~E--------------------hdQAmaaY 369 (611)
T KOG1173|consen 316 FAVGCYYLMIGKYSEARRYFSKATTLDP------TFGPAWLAFGHSFAGEGE--------------------HDQAMAAY 369 (611)
T ss_pred hhHHHHHHHhcCcHHHHHHHHHHhhcCc------cccHHHHHHhHHhhhcch--------------------HHHHHHHH
Confidence 9999999999999999999999998877 667799999999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
..|-++++...- -...+|.-|...++++-|..+|.+|+.++|..+- ++..+|.+.+..+.|.+|..+|
T Consensus 370 ~tAarl~~G~hl------P~LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl------v~~Elgvvay~~~~y~~A~~~f 437 (611)
T KOG1173|consen 370 FTAARLMPGCHL------PSLYLGMEYMRTNNLKLAEKFFKQALAIAPSDPL------VLHELGVVAYTYEEYPEALKYF 437 (611)
T ss_pred HHHHHhccCCcc------hHHHHHHHHHHhccHHHHHHHHHHHHhcCCCcch------hhhhhhheeehHhhhHHHHHHH
Confidence 999988755433 3567899999999999999999999999987765 8889999999999999999999
Q ss_pred HHHHHHHHHcCCcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 264 KRTLVLAQDLGDRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+.++...+...... .....+.+||.+|.+++.+++|+.++++++.+.++ .+.++..+|-+|..+|+++.|+.+
T Consensus 438 ~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k------~~~~~asig~iy~llgnld~Aid~ 511 (611)
T KOG1173|consen 438 QKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK------DASTHASIGYIYHLLGNLDKAIDH 511 (611)
T ss_pred HHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC------chhHHHHHHHHHHHhcChHHHHHH
Confidence 99997777664332 24557899999999999999999999999998776 456899999999999999999999
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHH
Q psy10738 343 ATKHLEISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 343 ~~~al~l~~~~~~~~~~~~a~~~la~l~ 370 (609)
|.+|+.+. +....+...|+...
T Consensus 512 fhKaL~l~------p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 512 FHKALALK------PDNIFISELLKLAI 533 (611)
T ss_pred HHHHHhcC------CccHHHHHHHHHHH
Confidence 99999876 44444444444333
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.5e-17 Score=183.94 Aligned_cols=229 Identities=13% Similarity=0.011 Sum_probs=105.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+|+.+|.++.. +++.+|+..+.+++... +. ......+|.++...|++++|+.+|++++...+ . ..
T Consensus 479 a~~~LG~~l~~-~~~~eAi~a~~~Al~~~------Pd-~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p---~----~~ 543 (987)
T PRK09782 479 AWNRLAKCYRD-TLPGVALYAWLQAEQRQ------PD-AWQHRAVAYQAYQVEDYATALAAWQKISLHDM---S----NE 543 (987)
T ss_pred HHHHHHHHHHh-CCcHHHHHHHHHHHHhC------Cc-hHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC---C----cH
Confidence 45555555544 45555555555544441 11 11233334444455555555555554322211 0 11
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
.+..+|.++...|+ +++|+.++++++... +.....+..++......|++++|+.
T Consensus 544 a~~~la~all~~Gd--------------------~~eA~~~l~qAL~l~------P~~~~l~~~La~~l~~~Gr~~eAl~ 597 (987)
T PRK09782 544 DLLAAANTAQAAGN--------------------GAARDRWLQQAEQRG------LGDNALYWWLHAQRYIPGQPELALN 597 (987)
T ss_pred HHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhcC------CccHHHHHHHHHHHHhCCCHHHHHH
Confidence 23444555555555 555555555554431 1112222233333334455555555
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301 (609)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 301 (609)
.+++++++.+. ..++.++|.++...|++++|+..|++++.+.+.. ..++.++|.++...|++++|+.
T Consensus 598 ~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~------~~a~~nLG~aL~~~G~~eeAi~ 664 (987)
T PRK09782 598 DLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALELEPNN------SNYQAALGYALWDSGDIAQSRE 664 (987)
T ss_pred HHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHCCCHHHHHH
Confidence 55555544331 1244455555555555555555555555544432 3445555555555555555555
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 302 ~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.|++++++.+. ...+++++|.++..+|++++|+.++++++++.
T Consensus 665 ~l~~AL~l~P~------~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 665 MLERAHKGLPD------DPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHhCCC------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 55555544332 22345555555555555555555555555444
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.9e-16 Score=177.66 Aligned_cols=328 Identities=13% Similarity=-0.010 Sum_probs=224.9
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+.++|.++...|++.+|..++..++. |.++...|++++|+..++++++..|++. . +..+|.++
T Consensus 52 ~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~----~-~~~la~~l 126 (765)
T PRK10049 52 YAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA----N-LLALAYVY 126 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----H-HHHHHHHH
Confidence 45667777777777777766665444 5566677777777777777777777663 2 56667777
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----------------------
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE---------------------- 128 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~---------------------- 128 (609)
...|++++|+..++++++. .|....++..+|.++...|..++|+..++++..
T Consensus 127 ~~~g~~~~Al~~l~~al~~------~P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~ 200 (765)
T PRK10049 127 KRAGRHWDELRAMTQALPR------APQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFM 200 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc
Confidence 7777777777777777777 555666666677777666666666655553221
Q ss_pred ------------------------HHHHcCC-cHHHHHHHHH-HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 129 ------------------------ISRQLND-KLSEGRALYN-LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 129 ------------------------l~~~~~d-~~~~~~~~~~-lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
..+...+ ......+... ++. +...|+ +++|+..
T Consensus 201 ~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~-Ll~~g~--------------------~~eA~~~ 259 (765)
T PRK10049 201 PTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGA-LLARDR--------------------YKDVISE 259 (765)
T ss_pred cccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHH-HHHhhh--------------------HHHHHHH
Confidence 0000000 0011111111 222 234455 8888888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
|+++++.. ...+..+ ...+|.+|..+|++++|+.+|++++...+.... ........++.++...|++++|+.+
T Consensus 260 ~~~ll~~~---~~~P~~a--~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~--~~~~~~~~L~~a~~~~g~~~eA~~~ 332 (765)
T PRK10049 260 YQRLKAEG---QIIPPWA--QRWVASAYLKLHQPEKAQSILTELFYHPETIAD--LSDEELADLFYSLLESENYPGALTV 332 (765)
T ss_pred HHHhhccC---CCCCHHH--HHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC--CChHHHHHHHHHHHhcccHHHHHHH
Confidence 88866541 1113222 333688999999999999999998864322211 0113556777788999999999999
Q ss_pred HHHHHHHHHHcC--------CcH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 263 YKRTLVLAQDLG--------DRA-VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 263 ~~~al~~~~~~~--------~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
++++....+... .+. ....++..+|.++...|++++|+..+++++...+.. ..++..+|.++...
T Consensus 333 l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n------~~l~~~lA~l~~~~ 406 (765)
T PRK10049 333 TAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGN------QGLRIDYASVLQAR 406 (765)
T ss_pred HHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhc
Confidence 999887654210 111 234567889999999999999999999998876553 45899999999999
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
|++++|+..+++++.+. +....++..++.++..+|+...|..
T Consensus 407 g~~~~A~~~l~~al~l~------Pd~~~l~~~~a~~al~~~~~~~A~~ 448 (765)
T PRK10049 407 GWPRAAENELKKAEVLE------PRNINLEVEQAWTALDLQEWRQMDV 448 (765)
T ss_pred CCHHHHHHHHHHHHhhC------CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999999999976 5667788899999999998766543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.3e-16 Score=181.05 Aligned_cols=283 Identities=11% Similarity=0.017 Sum_probs=231.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...|.++.. |++.+|+..|.+++...|++. ....+|.++...|++++|+..+++++.. .+. ...+..
T Consensus 481 ~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~-----~~L~lA~al~~~Gr~eeAi~~~rka~~~------~p~-~~a~~~ 547 (987)
T PRK09782 481 NRLAKCYRD-TLPGVALYAWLQAEQRQPDAW-----QHRAVAYQAYQVEDYATALAAWQKISLH------DMS-NEDLLA 547 (987)
T ss_pred HHHHHHHHh-CCcHHHHHHHHHHHHhCCchH-----HHHHHHHHHHHCCCHHHHHHHHHHHhcc------CCC-cHHHHH
Confidence 445777766 899999999999999998742 3566777778999999999999987554 222 234678
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.++...|++++|+.+|.+++...+ .....+..++......|+ +++|+..+++
T Consensus 548 la~all~~Gd~~eA~~~l~qAL~l~P------~~~~l~~~La~~l~~~Gr--------------------~~eAl~~~~~ 601 (987)
T PRK09782 548 AANTAQAAGNGAARDRWLQQAEQRGL------GDNALYWWLHAQRYIPGQ--------------------PELALNDLTR 601 (987)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHhCCC--------------------HHHHHHHHHH
Confidence 89999999999999999999998643 223445556666667799 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++++. +. ..++.++|.++...|++++|+.++++++.+.+.... ++.++|.++...|++++|+..|++
T Consensus 602 AL~l~------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~------a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 602 SLNIA------PS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN------YQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHhC------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99873 33 568899999999999999999999999998766543 899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
++++.+.. +.+++++|.++...|++++|+.++++++.+.+. .+.+....|.+.....++..|.+.+.+
T Consensus 669 AL~l~P~~------~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~------~a~i~~~~g~~~~~~~~~~~a~~~~~r 736 (987)
T PRK09782 669 AHKGLPDD------PALIRQLAYVNQRLDDMAATQHYARLVIDDIDN------QALITPLTPEQNQQRFNFRRLHEEVGR 736 (987)
T ss_pred HHHhCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------CchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 99987754 778999999999999999999999999988765 344777788888888888888888777
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
+..+. +... +....++++...+++-.+
T Consensus 737 ~~~~~------~~~~-a~~~~g~~~~~~~~~~~~ 763 (987)
T PRK09782 737 RWTFS------FDSS-IGLRSGAMSTANNNVGGA 763 (987)
T ss_pred HhhcC------ccch-hccccchHhhhcccccCC
Confidence 77654 2222 888888888888876544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.8e-16 Score=175.85 Aligned_cols=344 Identities=13% Similarity=0.033 Sum_probs=243.8
Q ss_pred hHhhhcCCCcchhHHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC
Q psy10738 8 SSDSQSGGADGGNMCLEL------------ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD 75 (609)
Q Consensus 8 ~~~~~~g~~~~a~~~~~l------------~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~ 75 (609)
.+....|+..+++..+.. ...|..+...|++++|+.+|+++++..|.++. ++..+|.++...|+
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~l~~~g~ 98 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD----YQRGLILTLADAGQ 98 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCC
Confidence 344555666666554443 33478899999999999999999999998854 67799999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+++|+..++++++. .|.... +..+|.++...|++++|+..+++++++.+ ....++..+|.++...|.
T Consensus 99 ~~eA~~~l~~~l~~------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P------~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 99 YDEALVKAKQLVSG------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP------QTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHHHHHHh------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC
Confidence 99999999999998 666677 99999999999999999999999999877 445566777888877666
Q ss_pred ccccCCCCC-CCCCchH-------------------------hHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHH
Q psy10738 156 AIGKVGQQD-PGEYPEE-------------------------VKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGN 208 (609)
Q Consensus 156 ~~~~~~~~~-~~~~~~~-------------------------~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~ 208 (609)
...+....+ ....|.. .....++|+..++.+++......+ .+....+......
T Consensus 166 ~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~ 245 (765)
T PRK10049 166 SAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLG 245 (765)
T ss_pred hHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHH
Confidence 221111000 0000000 000114555555555544332221 2233344443233
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
.++..|++++|+..|+++++..+.. +.. +...+|.+|...|++++|+.+|++++...+.. ..........++.
T Consensus 246 ~Ll~~g~~~eA~~~~~~ll~~~~~~--P~~---a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~--~~~~~~~~~~L~~ 318 (765)
T PRK10049 246 ALLARDRYKDVISEYQRLKAEGQII--PPW---AQRWVASAYLKLHQPEKAQSILTELFYHPETI--ADLSDEELADLFY 318 (765)
T ss_pred HHHHhhhHHHHHHHHHHhhccCCCC--CHH---HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCC--CCCChHHHHHHHH
Confidence 4467799999999999987653211 111 33346889999999999999999987643221 0111245566777
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhc--------chh-hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLM--------DRV-GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQ 359 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~--------~~~-~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 359 (609)
++...|++++|+.+++++....+... .+. ....++..+|.++...|++++|+..+++++... +..
T Consensus 319 a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~------P~n 392 (765)
T PRK10049 319 SLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA------PGN 392 (765)
T ss_pred HHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCC
Confidence 88999999999999999887654211 011 234577889999999999999999999998875 566
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC
Q psy10738 360 VTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 360 ~~a~~~la~l~~~~g~~~~al~ 381 (609)
..++..+|.++...|++..|+.
T Consensus 393 ~~l~~~lA~l~~~~g~~~~A~~ 414 (765)
T PRK10049 393 QGLRIDYASVLQARGWPRAAEN 414 (765)
T ss_pred HHHHHHHHHHHHhcCCHHHHHH
Confidence 7899999999999999877654
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.3e-14 Score=169.16 Aligned_cols=308 Identities=14% Similarity=0.052 Sum_probs=249.1
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTD-----DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
..+..+...|++++|...+..+....+. ++.....+...+|.++...|++++|..++++++..... .+......
T Consensus 414 ~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~ 492 (903)
T PRK04841 414 LQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIV 492 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHH
Confidence 3477788899999999999998775332 23345566677899999999999999999999875322 22333556
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
+...+|.++...|++++|..++.+++......++......++.++|.++...|+ ++.|..
T Consensus 493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~--------------------~~~A~~ 552 (903)
T PRK04841 493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGF--------------------LQAAYE 552 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCC--------------------HHHHHH
Confidence 778899999999999999999999999999888877778889999999999999 999999
Q ss_pred HHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 182 YYEQNLALMKEINDT--AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 182 ~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++++++.+....+.. .....++..+|.+++..|++++|...+.+++.+....+. .....++..+|.++...|+++.|
T Consensus 553 ~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~la~~~~~~G~~~~A 631 (903)
T PRK04841 553 TQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQP-QQQLQCLAMLAKISLARGDLDNA 631 (903)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCc-hHHHHHHHHHHHHHHHcCCHHHH
Confidence 999999998876432 333455678899999999999999999999998876543 33456778899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcH---------------------------------------HHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRA---------------------------------------VEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~---------------------------------------~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
...+.++..+....+... .....+..+|.++...|++++|.
T Consensus 632 ~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 711 (903)
T PRK04841 632 RRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAE 711 (903)
T ss_pred HHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999877654322100 00111346788888999999999
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 301 DYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 301 ~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
..+.+++......+.......++..+|.++...|+.++|..++.+|++++...+..
T Consensus 712 ~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~~g~~ 767 (903)
T PRK04841 712 IILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANRTGFI 767 (903)
T ss_pred HHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCccchh
Confidence 99999999888877777788888999999999999999999999999998777654
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.2e-15 Score=161.73 Aligned_cols=311 Identities=17% Similarity=0.182 Sum_probs=233.1
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
+.....++-+|..++..|++++|..++.++|..+|.++. +|+.||.+|..+|+.+++...+-.|-.+ .+.
T Consensus 136 ~~~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~----ay~tL~~IyEqrGd~eK~l~~~llAAHL------~p~ 205 (895)
T KOG2076|consen 136 APELRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI----AYYTLGEIYEQRGDIEKALNFWLLAAHL------NPK 205 (895)
T ss_pred CHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh----hHHHHHHHHHHcccHHHHHHHHHHHHhc------CCC
Confidence 444677888899999999999999999999999998754 8999999999999999999998888777 566
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....|..++.....+|++.+|.-||.+|+...+ ......+..+.+|...|+ +..
T Consensus 206 d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p------~n~~~~~ers~L~~~~G~--------------------~~~ 259 (895)
T KOG2076|consen 206 DYELWKRLADLSEQLGNINQARYCYSRAIQANP------SNWELIYERSSLYQKTGD--------------------LKR 259 (895)
T ss_pred ChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCC------cchHHHHHHHHHHHHhCh--------------------HHH
Confidence 668999999999999999999999999999877 446678899999999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|...|.+.+.+.... +....-..-...+..+...++-+.|++.++.++...... .....+..++.+++....++.
T Consensus 260 Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~----~~~ed~ni~ael~l~~~q~d~ 334 (895)
T KOG2076|consen 260 AMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDE----ASLEDLNILAELFLKNKQSDK 334 (895)
T ss_pred HHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhcccc----ccccHHHHHHHHHHHhHHHHH
Confidence 999998888775411 111111222334556666666677777777776621110 001123344444554444444
Q ss_pred HHHHHHHHHH---------------------------------------------------------HH-HHcCCcHHHH
Q psy10738 259 ASEHYKRTLV---------------------------------------------------------LA-QDLGDRAVEA 280 (609)
Q Consensus 259 A~~~~~~al~---------------------------------------------------------~~-~~~~~~~~~~ 280 (609)
|......-.. .. ...-......
T Consensus 335 ~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~ 414 (895)
T KOG2076|consen 335 ALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDV 414 (895)
T ss_pred hhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhH
Confidence 4443322211 00 0000123346
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQV 360 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 360 (609)
..+..++.+|...|+|.+|+.++...... .....+.+|+.+|.||..+|.+++|+.+|++++.+. +...
T Consensus 415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~-----~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~------p~~~ 483 (895)
T KOG2076|consen 415 DLYLDLADALTNIGKYKEALRLLSPITNR-----EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA------PDNL 483 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhcC-----ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC------CCch
Confidence 67889999999999999999999876542 233347799999999999999999999999999987 7888
Q ss_pred HHHHHHHHHHHHcCCCCCCCC
Q psy10738 361 TAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 361 ~a~~~la~l~~~~g~~~~al~ 381 (609)
.++..|+.++..+|++++|+.
T Consensus 484 D~Ri~Lasl~~~~g~~EkalE 504 (895)
T KOG2076|consen 484 DARITLASLYQQLGNHEKALE 504 (895)
T ss_pred hhhhhHHHHHHhcCCHHHHHH
Confidence 999999999999999987643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=5.7e-16 Score=168.96 Aligned_cols=268 Identities=15% Similarity=0.064 Sum_probs=209.1
Q ss_pred chhHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---------CCHHHHHHHHHH
Q psy10738 18 GGNMCLELALEGERLCKA---GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---------GDYQKAMQYHKQ 85 (609)
Q Consensus 18 ~a~~~~~l~~~g~~~~~~---g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~~~~ 85 (609)
.+...+.++++|...... +++++|+.+|++|++.+|++.. ++..+|.+|... +++++|+..+++
T Consensus 254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~----a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~ 329 (553)
T PRK12370 254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIA----PYCALAECYLSMAQMGIFDKQNAMIKAKEHAIK 329 (553)
T ss_pred CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHH----HHHHHHHHHHHHHHcCCcccchHHHHHHHHHHH
Confidence 445666788888766543 4578999999999999998743 677788777644 348999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCC
Q psy10738 86 DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDP 165 (609)
Q Consensus 86 al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~ 165 (609)
++++ .|..+.++..+|.++...|++++|+.+|++++++.+ ..+.+++.+|.++...|+
T Consensus 330 Al~l------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~G~---------- 387 (553)
T PRK12370 330 ATEL------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSP------ISADIKYYYGWNLFMAGQ---------- 387 (553)
T ss_pred HHhc------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC----------
Confidence 9999 788899999999999999999999999999999977 566789999999999999
Q ss_pred CCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10738 166 GEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSN 245 (609)
Q Consensus 166 ~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 245 (609)
+++|+..+++++++. +....++..++.+++..|++++|+..+++++...+.. ...++.+
T Consensus 388 ----------~~eAi~~~~~Al~l~------P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~-----~~~~~~~ 446 (553)
T PRK12370 388 ----------LEEALQTINECLKLD------PTRAAAGITKLWITYYHTGIDDAIRLGDELRSQHLQD-----NPILLSM 446 (553)
T ss_pred ----------HHHHHHHHHHHHhcC------CCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhcccc-----CHHHHHH
Confidence 999999999999883 2223344556667888999999999999987654211 1226788
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q psy10738 246 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS 325 (609)
Q Consensus 246 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 325 (609)
+|.++..+|++++|...+.+.....+. ...+...++.+|...| ++|...+++.++....... -...
T Consensus 447 la~~l~~~G~~~eA~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~------~~~~ 512 (553)
T PRK12370 447 QVMFLSLKGKHELARKLTKEISTQEIT------GLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN------NPGL 512 (553)
T ss_pred HHHHHHhCCCHHHHHHHHHHhhhccch------hHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc------CchH
Confidence 999999999999999999886554433 3456677888888888 4888888886665544222 2223
Q ss_pred HHHHHHHcCChHHHHHHHHHHH
Q psy10738 326 LGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 326 La~~~~~~g~~~~A~~~~~~al 347 (609)
++.+|.-.|+.+.|..+ +++.
T Consensus 513 ~~~~~~~~g~~~~~~~~-~~~~ 533 (553)
T PRK12370 513 LPLVLVAHGEAIAEKMW-NKFK 533 (553)
T ss_pred HHHHHHHHhhhHHHHHH-HHhh
Confidence 78888888988888776 5443
|
|
| >KOG2003|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.4e-16 Score=152.46 Aligned_cols=285 Identities=21% Similarity=0.187 Sum_probs=238.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG--DYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
++-.+.+.|+++.|++.++-.-.. |......+-.+|...++.+| ++..|..|...++.+ +...+.++.+
T Consensus 425 ka~~~lk~~d~~~aieilkv~~~k---dnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~------dryn~~a~~n 495 (840)
T KOG2003|consen 425 KAGELLKNGDIEGAIEILKVFEKK---DNKTASAAANNLCALRFLQGGKDFADAQQYADIALNI------DRYNAAALTN 495 (840)
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc---cchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcc------cccCHHHhhc
Confidence 477889999999999987654332 33344556677777777754 788999999999988 7778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.|++.+..|++++|.+.|.+++.-.. ....+++++|..+..+|+ +++|+++|-+
T Consensus 496 kgn~~f~ngd~dka~~~ykeal~nda------sc~ealfniglt~e~~~~--------------------ldeald~f~k 549 (840)
T KOG2003|consen 496 KGNIAFANGDLDKAAEFYKEALNNDA------SCTEALFNIGLTAEALGN--------------------LDEALDCFLK 549 (840)
T ss_pred CCceeeecCcHHHHHHHHHHHHcCch------HHHHHHHHhcccHHHhcC--------------------HHHHHHHHHH
Confidence 99999999999999999999986544 677899999999999999 9999999988
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
.-.+. ...+.++..++++|..+.+..+|++++.++..+.+..+. ++..||.+|-..|+-.+|..++-.
T Consensus 550 lh~il------~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~------ilskl~dlydqegdksqafq~~yd 617 (840)
T KOG2003|consen 550 LHAIL------LNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPA------ILSKLADLYDQEGDKSQAFQCHYD 617 (840)
T ss_pred HHHHH------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHH------HHHHHHHHhhcccchhhhhhhhhh
Confidence 77764 344678999999999999999999999999887765443 788999999999999999999988
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
....++.. ..+..+||..|....=+++|+.||+++--+.+. .......++.|+.+.|+|.+|...|+.
T Consensus 618 syryfp~n------ie~iewl~ayyidtqf~ekai~y~ekaaliqp~------~~kwqlmiasc~rrsgnyqka~d~yk~ 685 (840)
T KOG2003|consen 618 SYRYFPCN------IETIEWLAAYYIDTQFSEKAINYFEKAALIQPN------QSKWQLMIASCFRRSGNYQKAFDLYKD 685 (840)
T ss_pred cccccCcc------hHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc------HHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 88877754 567778999999999999999999998766554 344566789999999999999999988
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
...-+ +....++.-|.++.-.+|..+
T Consensus 686 ~hrkf------pedldclkflvri~~dlgl~d 711 (840)
T KOG2003|consen 686 IHRKF------PEDLDCLKFLVRIAGDLGLKD 711 (840)
T ss_pred HHHhC------ccchHHHHHHHHHhccccchh
Confidence 77655 566788888888888888743
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.2e-15 Score=151.78 Aligned_cols=329 Identities=21% Similarity=0.252 Sum_probs=240.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++-.+|...+..|+|+.|+.+|..|+.++|.+.- .|.+...+|..+|+|++|++-..+.+++ .|..+..|
T Consensus 4 e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv----lySnrsaa~a~~~~~~~al~da~k~~~l------~p~w~kgy 73 (539)
T KOG0548|consen 4 ELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV----LYSNRSAAYASLGSYEKALKDATKTRRL------NPDWAKGY 73 (539)
T ss_pred HHHHHHHhhcccccHHHHHHHHHHHHccCCCccc----hhcchHHHHHHHhhHHHHHHHHHHHHhc------CCchhhHH
Confidence 4556799999999999999999999999998744 7889999999999999999999999999 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-HHHHH-----------------------------------------
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-LSEGR----------------------------------------- 141 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-~~~~~----------------------------------------- 141 (609)
..+|..+.-+|+|++|+..|.+.|+..+..... .+...
T Consensus 74 ~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~ 153 (539)
T KOG0548|consen 74 SRKGAALFGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILE 153 (539)
T ss_pred HHhHHHHHhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHH
Confidence 999999999999999999999998764421000 00000
Q ss_pred -----------------HHHHHHHHHHH------cccccccCCCCCC-----------CCCchH----------------
Q psy10738 142 -----------------ALYNLGNVYHA------KGKAIGKVGQQDP-----------GEYPEE---------------- 171 (609)
Q Consensus 142 -----------------~~~~lg~~~~~------~g~~~~~~~~~~~-----------~~~~~~---------------- 171 (609)
....+|.+... .+.........+| ++..++
T Consensus 154 ~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgna 233 (539)
T KOG0548|consen 154 IIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNA 233 (539)
T ss_pred HhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHH
Confidence 00001111000 0000000000111 111110
Q ss_pred --hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHH
Q psy10738 172 --VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-DKAAERRANSNLGN 248 (609)
Q Consensus 172 --~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~ 248 (609)
...++..|++.|..++++. ..+..+.+.+-+|+..|.+.+.+....++++.-.+.. +...++.++..+|.
T Consensus 234 aykkk~f~~a~q~y~~a~el~-------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~ 306 (539)
T KOG0548|consen 234 AYKKKDFETAIQHYAKALELA-------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGN 306 (539)
T ss_pred HHHhhhHHHHHHHHHHHHhHh-------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhh
Confidence 1356778888888888874 3345678889999999999999998888877655532 22335667777899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQDLGD--------------------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~~~~--------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.|...++++.|+.+|.+++...+.-.. ....+.--..-|+.++..|+|..|+.+|.+|+.
T Consensus 307 a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIk 386 (539)
T KOG0548|consen 307 AYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIK 386 (539)
T ss_pred hhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Confidence 999999999999999998875443100 011133334568999999999999999999887
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
..++ .+..|.+.|.||.++|++..|+...++++++. +....++..-|.++..+.++.+++.
T Consensus 387 r~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~------p~~~kgy~RKg~al~~mk~ydkAle 447 (539)
T KOG0548|consen 387 RDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELD------PNFIKAYLRKGAALRAMKEYDKALE 447 (539)
T ss_pred cCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC------chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6543 67799999999999999999999999999883 6777888888888888877666553
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.70 E-value=4e-17 Score=163.08 Aligned_cols=263 Identities=22% Similarity=0.263 Sum_probs=110.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.|..++..|++++|++++.+.+... |+++ ..|..+|.+....++++.|+..|++.+.. .+.....+..
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~----~~~~~~a~La~~~~~~~~A~~ay~~l~~~------~~~~~~~~~~ 83 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDP----EYWRLLADLAWSLGDYDEAIEAYEKLLAS------DKANPQDYER 83 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc----ccccccccccccccccccccccccccccc------cccccccccc
Confidence 3899999999999999997766543 5554 47788999999999999999999999887 4445666777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
++.+ ...+++++|+.+++++.+..+ ....+.....++...|+ ++++...+++
T Consensus 84 l~~l-~~~~~~~~A~~~~~~~~~~~~-------~~~~l~~~l~~~~~~~~--------------------~~~~~~~l~~ 135 (280)
T PF13429_consen 84 LIQL-LQDGDPEEALKLAEKAYERDG-------DPRYLLSALQLYYRLGD--------------------YDEAEELLEK 135 (280)
T ss_dssp ------------------------------------------H-HHHTT---------------------HHHHHHHHHH
T ss_pred cccc-ccccccccccccccccccccc-------ccchhhHHHHHHHHHhH--------------------HHHHHHHHHH
Confidence 7777 789999999999988766432 22345566677888899 9999999888
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+... ...+.....+..+|.++...|++++|+.+++++++..|...+ +...++.+++..|+++++...+..
T Consensus 136 ~~~~----~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------~~~~l~~~li~~~~~~~~~~~l~~ 205 (280)
T PF13429_consen 136 LEEL----PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------ARNALAWLLIDMGDYDEAREALKR 205 (280)
T ss_dssp HHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------HHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHhc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------HHHHHHHHHHHCCChHHHHHHHHH
Confidence 6642 212344678899999999999999999999999999876554 777899999999999998888888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
.....+.. ...+..+|.+|..+|++++|+.++++++...+. ...++..+|.++...|+.++|..++.+
T Consensus 206 ~~~~~~~~------~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~------d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 206 LLKAAPDD------PDLWDALAAAYLQLGRYEEALEYLEKALKLNPD------DPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHH-HTS------CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHT--------------
T ss_pred HHHHCcCH------HHHHHHHHHHhcccccccccccccccccccccc------ccccccccccccccccccccccccccc
Confidence 77766443 336678899999999999999999998876543 456888999999999999999999999
Q ss_pred HHHHH
Q psy10738 346 HLEIS 350 (609)
Q Consensus 346 al~l~ 350 (609)
++...
T Consensus 274 ~~~~l 278 (280)
T PF13429_consen 274 ALRLL 278 (280)
T ss_dssp -----
T ss_pred ccccc
Confidence 88754
|
|
| >KOG1173|consensus | Back alignment and domain information |
|---|
Probab=99.70 E-value=7.7e-16 Score=155.48 Aligned_cols=234 Identities=21% Similarity=0.292 Sum_probs=206.6
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
+++..|+..+=..+-.+.++..|..+ ..|+.+|..|...|++.+|..++.++..+ ++..+.+|...|..+
T Consensus 287 ~l~el~~~n~Lf~lsh~LV~~yP~~a----~sW~aVg~YYl~i~k~seARry~SKat~l------D~~fgpaWl~fghsf 356 (611)
T KOG1173|consen 287 CLYELGKSNKLFLLSHKLVDLYPSKA----LSWFAVGCYYLMIGKYSEARRYFSKATTL------DPTFGPAWLAFGHSF 356 (611)
T ss_pred HHHHhcccchHHHHHHHHHHhCCCCC----cchhhHHHHHHHhcCcHHHHHHHHHHhhc------CccccHHHHHHhHHh
Confidence 78888888887777788888888764 47899999999999999999999999999 888999999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 111 KVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 111 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
...|..++|+.+|..|-++.+ +...-...+|.-|...++ +.-|..+|.+|+.++
T Consensus 357 a~e~EhdQAmaaY~tAarl~~------G~hlP~LYlgmey~~t~n--------------------~kLAe~Ff~~A~ai~ 410 (611)
T KOG1173|consen 357 AGEGEHDQAMAAYFTAARLMP------GCHLPSLYLGMEYMRTNN--------------------LKLAEKFFKQALAIA 410 (611)
T ss_pred hhcchHHHHHHHHHHHHHhcc------CCcchHHHHHHHHHHhcc--------------------HHHHHHHHHHHHhcC
Confidence 999999999999999999988 333456778999999999 999999999999995
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
|....++..+|.+.+..+.|.+|..+|+.++...+...... ...-.+.|||.++.+++.+++|+.++++++.+
T Consensus 411 ------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l 484 (611)
T KOG1173|consen 411 ------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL 484 (611)
T ss_pred ------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 44456889999999999999999999999997777654433 23457899999999999999999999999999
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
.+.. +.++..+|.+|..+|+++.|+++|.+++.+.+.
T Consensus 485 ~~k~------~~~~asig~iy~llgnld~Aid~fhKaL~l~p~ 521 (611)
T KOG1173|consen 485 SPKD------ASTHASIGYIYHLLGNLDKAIDHFHKALALKPD 521 (611)
T ss_pred CCCc------hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCc
Confidence 8874 788999999999999999999999999988654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.70 E-value=3.5e-14 Score=147.20 Aligned_cols=326 Identities=16% Similarity=0.066 Sum_probs=228.8
Q ss_pred CchhhhhhHhhhcCCCcchhHHHH---------------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHH
Q psy10738 1 MSVGNISSSDSQSGGADGGNMCLE---------------LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQ 65 (609)
Q Consensus 1 m~l~~Lg~~~~~~g~~~~a~~~~~---------------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~ 65 (609)
|++..+|..+...|+.+.+...+. .+.+|..+...|++++|...++++++..|.+.. ++..
T Consensus 7 ~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~----a~~~ 82 (355)
T cd05804 7 LGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLL----ALKL 82 (355)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHH
Confidence 355667777777776666443333 334478899999999999999999999998863 3333
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN 145 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~ 145 (609)
+..++..|++..+.....+++.. .....+....++..+|.++...|++++|+..+++++++.+ ....++..
T Consensus 83 -~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p------~~~~~~~~ 153 (355)
T cd05804 83 -HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP------DDAWAVHA 153 (355)
T ss_pred -hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCcHHHHH
Confidence 66666666665555555555544 3344667778888999999999999999999999999876 33668899
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+|.++...|+ +++|+.++++++...+. +.......+..+|.++...|++++|+..+++
T Consensus 154 la~i~~~~g~--------------------~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~ 211 (355)
T cd05804 154 VAHVLEMQGR--------------------FKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFYLERGDYEAALAIYDT 211 (355)
T ss_pred HHHHHHHcCC--------------------HHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999 99999999999887543 2233345678899999999999999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 226 RLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 226 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
++...+. ............+...+...|....+..+ +.+................-...+.++...|+.++|...+..
T Consensus 212 ~~~~~~~-~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~ 289 (355)
T cd05804 212 HIAPSAE-SDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAA 289 (355)
T ss_pred HhccccC-CChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 8643321 11111110111222333344443333332 222222211111111222224678888999999999999999
Q ss_pred HHHHHHH---hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy10738 306 HLIIAQQ---LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363 (609)
Q Consensus 306 al~~~~~---~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~ 363 (609)
....... .+.......+....|.++...|++++|...+..++.+...+|....+..+.
T Consensus 290 l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~aq~~~~ 350 (355)
T cd05804 290 LKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSHAQRDVF 350 (355)
T ss_pred HHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHH
Confidence 8887766 444555677788899999999999999999999999999999876665554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.5e-13 Score=160.21 Aligned_cols=327 Identities=12% Similarity=-0.019 Sum_probs=254.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHH-hCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---ChhhHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQ-AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---DKLGEAKSSG 104 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~-~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---d~~~~~~a~~ 104 (609)
|..+...|++..+..++..+-. ....++ .+....+.++...|++++|..++..+.......+ +......+..
T Consensus 381 a~~l~~~g~~~~l~~~l~~lp~~~~~~~~----~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~ 456 (903)
T PRK04841 381 GWSLFNQGELSLLEECLNALPWEVLLENP----RLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNA 456 (903)
T ss_pred HHHHHhcCChHHHHHHHHhCCHHHHhcCc----chHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHH
Confidence 5566666777665555544310 011122 2345678888899999999999998877654332 2233456667
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++...|++++|..++++++...+. .+......+...+|.++...|+ +++|..++.
T Consensus 457 ~~a~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~lg~~~~~~G~--------------------~~~A~~~~~ 515 (903)
T PRK04841 457 LRAQVAINDGDPEEAERLAELALAELPL-TWYYSRIVATSVLGEVHHCKGE--------------------LARALAMMQ 515 (903)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcCCC-ccHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Confidence 7899999999999999999999875332 2333455677899999999999 999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK--AAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
+++......+.......++.++|.++...|++++|..++.+++.+....+.. .....++..+|.++...|++++|...
T Consensus 516 ~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~ 595 (903)
T PRK04841 516 QTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQC 595 (903)
T ss_pred HHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 9999999888877778899999999999999999999999999998876432 22344567889999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-------------------------
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV------------------------- 317 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------------------------- 317 (609)
+.+++.+....+ ......++..+|.++...|++++|...+.++..+....+...
T Consensus 596 ~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~ 674 (903)
T PRK04841 596 ARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAAN 674 (903)
T ss_pred HHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHH
Confidence 999999887554 333456777899999999999999999999877654322100
Q ss_pred --------------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 318 --------------GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 318 --------------~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.....+..++.++...|++++|...+++++...+..+.......++..++.++...|++..|..
T Consensus 675 ~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~ 752 (903)
T PRK04841 675 WLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQR 752 (903)
T ss_pred HHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 0011135788899999999999999999999999999888888999999999999999776654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=7.2e-15 Score=147.33 Aligned_cols=226 Identities=16% Similarity=0.048 Sum_probs=173.1
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
..+..+.++..+.+++...+-++...+..|+.+|.+|...|++++|+..|++++++ .|..+.++.++|.++...
T Consensus 38 ~~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 38 PTLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL------RPDMADAYNYLGIYLTQA 111 (296)
T ss_pred CchHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHC
Confidence 34677889999999998777677777889999999999999999999999999998 778899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
|++++|+..|++++++.+ ....++.++|.++...|+ +++|+..+++++.+.+.
T Consensus 112 g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~l~~~g~--------------------~~eA~~~~~~al~~~P~- 164 (296)
T PRK11189 112 GNFDAAYEAFDSVLELDP------TYNYAYLNRGIALYYGGR--------------------YELAQDDLLAFYQDDPN- 164 (296)
T ss_pred CCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhCCC-
Confidence 999999999999999877 456789999999999999 99999999999986322
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HH
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV---LA 270 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~ 270 (609)
.+. ...+ ..+....+++++|+..+.+++.... .+ .+ ..+.++...|++..+ ..+..+.. ..
T Consensus 165 --~~~-~~~~---~~l~~~~~~~~~A~~~l~~~~~~~~--~~------~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~ 228 (296)
T PRK11189 165 --DPY-RALW---LYLAESKLDPKQAKENLKQRYEKLD--KE------QW-GWNIVEFYLGKISEE-TLMERLKAGATDN 228 (296)
T ss_pred --CHH-HHHH---HHHHHccCCHHHHHHHHHHHHhhCC--cc------cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc
Confidence 121 1111 1234457889999999987663321 11 11 134555566766443 23333321 11
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
.+. ......+|+.+|.++...|++++|+.+|++++.+.
T Consensus 229 ~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 229 TEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 111 11246789999999999999999999999999765
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.9e-15 Score=142.44 Aligned_cols=205 Identities=20% Similarity=0.210 Sum_probs=166.2
Q ss_pred hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 56 LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 56 ~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d 135 (609)
....+.++..+|.++...|++++|+..+++++.. .+....++..+|.++...|++++|+.++++++...+
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~---- 96 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNP---- 96 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC----
Confidence 3345678899999999999999999999999877 566678889999999999999999999999988755
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
....++.++|.++...|+ +++|+.++++++.... .+.....+.++|.++...|+
T Consensus 97 --~~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~ 150 (234)
T TIGR02521 97 --NNGDVLNNYGTFLCQQGK--------------------YEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGD 150 (234)
T ss_pred --CCHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCC
Confidence 334578899999999999 9999999999886421 23334577889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
+++|..++.+++...+... .++..+|.++...|++++|..++++++...+. ....+..++.++...|+
T Consensus 151 ~~~A~~~~~~~~~~~~~~~------~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 151 FDKAEKYLTRALQIDPQRP------ESLLELAELYYLRGQYKDARAYLERYQQTYNQ------TAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHHHHHHHhCcCCh------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHhh
Confidence 9999999999988755432 36778999999999999999999998887221 24455677888889999
Q ss_pred HHHHHHHHHHHHH
Q psy10738 296 YPTAIDYHLRHLI 308 (609)
Q Consensus 296 ~~~A~~~~~~al~ 308 (609)
.++|..+.+....
T Consensus 219 ~~~a~~~~~~~~~ 231 (234)
T TIGR02521 219 VAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999888776544
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.9e-15 Score=147.13 Aligned_cols=289 Identities=20% Similarity=0.160 Sum_probs=238.4
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
...-+...+|..+++..+|.+|+..|..|++..|++ +..|...+.+++..|+|++|.-..++.+.+ .+..
T Consensus 47 ~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~----a~yy~nRAa~~m~~~~~~~a~~dar~~~r~------kd~~ 116 (486)
T KOG0550|consen 47 QQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDN----ASYYSNRAATLMMLGRFEEALGDARQSVRL------KDGF 116 (486)
T ss_pred HHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccc----hhhhchhHHHHHHHHhHhhcccchhhheec------CCCc
Confidence 334455567999999999999999999999999988 558899999999999999999999999888 7777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-----H-------HHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCC
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHL-----E-------ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGE 167 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al-----~-------l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~ 167 (609)
...+...+.++...++..+|...++..- . +.+.....+....+-..-+.++...|+
T Consensus 117 ~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~------------ 184 (486)
T KOG0550|consen 117 SKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGD------------ 184 (486)
T ss_pred cccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhccc------------
Confidence 7788899999999998888887766221 1 111112223445566777888999999
Q ss_pred CchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH------HHHH
Q psy10738 168 YPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA------AERR 241 (609)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------~~~~ 241 (609)
+++|...--..+++ ......++...|.+++..++.+.|+.+|++++.+.+...+.. ....
T Consensus 185 --------~~~a~~ea~~ilkl------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le 250 (486)
T KOG0550|consen 185 --------YDEAQSEAIDILKL------DATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLE 250 (486)
T ss_pred --------chhHHHHHHHHHhc------ccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHH
Confidence 88888766665555 455677888999999999999999999999999988754432 2244
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 321 (609)
.+..-|+-.++.|+|..|.+.|..+|.+.+... ...+..|.+.|.+...+|+..+|+.-.+.++.+... ...
T Consensus 251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~--~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s------yik 322 (486)
T KOG0550|consen 251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNK--KTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS------YIK 322 (486)
T ss_pred HHHhhhhhHhhccchhHHHHHHHHhhcCCcccc--chhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH------HHH
Confidence 667789999999999999999999999998743 346889999999999999999999999999998776 567
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
++...|.||..++++++|.+.|+++++....
T Consensus 323 all~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 323 ALLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 9999999999999999999999999998755
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=2e-15 Score=153.26 Aligned_cols=271 Identities=17% Similarity=0.176 Sum_probs=206.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+.+|..+++.|+..+|+-.|+.|+..+|.+ +.+|..||.+....++-..|+..+++++++ +|....++..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkqdP~h----aeAW~~LG~~qaENE~E~~ai~AL~rcl~L------dP~NleaLma 358 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQDPQH----AEAWQKLGITQAENENEQNAISALRRCLEL------DPTNLEALMA 358 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhhChHH----HHHHHHhhhHhhhccchHHHHHHHHHHHhc------CCccHHHHHH
Confidence 456999999999999999999999999987 559999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
||..|...|.-.+|+.++.+-+...+... .+.... ..+. ...+.++. ....+..-.++|..
T Consensus 359 LAVSytNeg~q~~Al~~L~~Wi~~~p~y~----------~l~~a~-~~~~------~~~~~s~~--~~~~l~~i~~~fLe 419 (579)
T KOG1125|consen 359 LAVSYTNEGLQNQALKMLDKWIRNKPKYV----------HLVSAG-ENED------FENTKSFL--DSSHLAHIQELFLE 419 (579)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHhCccch----------hccccC-cccc------ccCCcCCC--CHHHHHHHHHHHHH
Confidence 99999999999999999998877654211 100000 0000 00000111 01113333333433
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+ ....+. .....++..||.+|+..|+|++|+.+|+.||...+.... .|..||..+....+.++|+..|.+
T Consensus 420 a---a~~~~~-~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~------lWNRLGAtLAN~~~s~EAIsAY~r 489 (579)
T KOG1125|consen 420 A---ARQLPT-KIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL------LWNRLGATLANGNRSEEAISAYNR 489 (579)
T ss_pred H---HHhCCC-CCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH------HHHHhhHHhcCCcccHHHHHHHHH
Confidence 3 222221 123568889999999999999999999999998665544 899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch----hhHHHHHHHHHHHHHHcCChHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR----VGEGRACWSLGNAHAARGNHEKALY 341 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~La~~~~~~g~~~~A~~ 341 (609)
|+++-|.. .++.++||..|..+|.|++|.++|-.||.+.+..... .....+|..|-.++...++.+-+..
T Consensus 490 ALqLqP~y------VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 490 ALQLQPGY------VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHhcCCCe------eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 99998875 7899999999999999999999999999998873321 1123455555566666666664443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.66 E-value=7.9e-15 Score=160.03 Aligned_cols=260 Identities=13% Similarity=-0.015 Sum_probs=200.4
Q ss_pred HHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYL---GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG---------KYDEAMVCCKRHL 127 (609)
Q Consensus 60 a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g---------~~~~A~~~~~~al 127 (609)
+..++..|..+... +.+++|+.++++++++ .|..+.++..+|.+|...+ ++++|+..+++++
T Consensus 258 a~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al 331 (553)
T PRK12370 258 STMVYLRGKHELNQYTPYSLQQALKLLTQCVNM------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKAT 331 (553)
T ss_pred HHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHH
Confidence 34556666655443 4578999999999998 7888889999998877543 4899999999999
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLG 207 (609)
Q Consensus 128 ~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg 207 (609)
++.+ ....++..+|.++...|+ +++|+..|++++++ .+....+++++|
T Consensus 332 ~ldP------~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~Al~l------~P~~~~a~~~lg 379 (553)
T PRK12370 332 ELDH------NNPQALGLLGLINTIHSE--------------------YIVGSLLFKQANLL------SPISADIKYYYG 379 (553)
T ss_pred hcCC------CCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHH
Confidence 9876 556789999999999999 99999999999998 455567899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLG 287 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 287 (609)
.++...|++++|+.++++++++.+.... ++..++.++...|++++|+..+++++...+. ....++..+|
T Consensus 380 ~~l~~~G~~~eAi~~~~~Al~l~P~~~~------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p-----~~~~~~~~la 448 (553)
T PRK12370 380 WNLFMAGQLEEALQTINECLKLDPTRAA------AGITKLWITYYHTGIDDAIRLGDELRSQHLQ-----DNPILLSMQV 448 (553)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCChh------hHHHHHHHHHhccCHHHHHHHHHHHHHhccc-----cCHHHHHHHH
Confidence 9999999999999999999998766433 4445566777899999999999998765421 1255778899
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
.++...|++++|...+.+.....+ ....+...++.+|...|+ +|...+++.++......... ..++
T Consensus 449 ~~l~~~G~~~eA~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~------~~~~ 514 (553)
T PRK12370 449 MFLSLKGKHELARKLTKEISTQEI------TGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNP------GLLP 514 (553)
T ss_pred HHHHhCCCHHHHHHHHHHhhhccc------hhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCc------hHHH
Confidence 999999999999999987654432 234567778888888884 88888888666554332221 1266
Q ss_pred HHHHHcCCCCCCCCC
Q psy10738 368 DLRKALGMSTNDLSP 382 (609)
Q Consensus 368 ~l~~~~g~~~~al~~ 382 (609)
.++...|+.+.+..|
T Consensus 515 ~~~~~~g~~~~~~~~ 529 (553)
T PRK12370 515 LVLVAHGEAIAEKMW 529 (553)
T ss_pred HHHHHHhhhHHHHHH
Confidence 777777776554433
|
|
| >KOG2076|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=1e-13 Score=147.33 Aligned_cols=327 Identities=16% Similarity=0.145 Sum_probs=227.1
Q ss_pred hhhHhhhcCCCcchhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh
Q psy10738 6 ISSSDSQSGGADGGNMCLELAL------------EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~l~~------------~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~ 73 (609)
.+..+...|+.+.|...+.-+. .|.+|-..|+.+++..++-.|-.++|.|++ .|..++.....+
T Consensus 145 eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e----~W~~ladls~~~ 220 (895)
T KOG2076|consen 145 EANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYE----LWKRLADLSEQL 220 (895)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChH----HHHHHHHHHHhc
Confidence 4555566688887776554333 388999999999999999999999998865 778888888899
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
|++..|.-+|.+|+.. .|......+..+.+|..+|++..|+..|.+.+.+.+.. +....-..-...+..+...
T Consensus 221 ~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~-d~er~~d~i~~~~~~~~~~ 293 (895)
T KOG2076|consen 221 GNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPV-DIERIEDLIRRVAHYFITH 293 (895)
T ss_pred ccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCch-hHHHHHHHHHHHHHHHHHh
Confidence 9999999999999988 77778888889999999999999999999888877621 1112222233445556666
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK----- 228 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~----- 228 (609)
++ -+.|++.++.++..... ......+..++.++.....++.|..+......
T Consensus 294 ~~--------------------~e~a~~~le~~~s~~~~----~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~ 349 (895)
T KOG2076|consen 294 NE--------------------RERAAKALEGALSKEKD----EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEK 349 (895)
T ss_pred hH--------------------HHHHHHHHHHHHhhccc----cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCC
Confidence 65 45555555555541110 11111222333444444444444333322211
Q ss_pred -----------------------------------------------------HHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 229 -----------------------------------------------------IAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 229 -----------------------------------------------------~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
+.............+..++.++...|+
T Consensus 350 d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~ 429 (895)
T KOG2076|consen 350 DDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGK 429 (895)
T ss_pred ChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhccc
Confidence 000111123334588899999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
|.+|+.++........ ...+.+|+.+|.+|..+|.+++|+++|.+++...+..- .+...|+.++..+|+
T Consensus 430 ~~~Al~~l~~i~~~~~-----~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~------D~Ri~Lasl~~~~g~ 498 (895)
T KOG2076|consen 430 YKEALRLLSPITNREG-----YQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNL------DARITLASLYQQLGN 498 (895)
T ss_pred HHHHHHHHHHHhcCcc-----ccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCch------hhhhhHHHHHHhcCC
Confidence 9999999987665332 22377999999999999999999999999999877643 488899999999999
Q ss_pred hHHHHHHHHHHHHHH---HHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 336 HEKALYFATKHLEIS---KQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 336 ~~~A~~~~~~al~l~---~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
+++|.+.+.....-- .+........+......+++...|+.+.
T Consensus 499 ~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~ 544 (895)
T KOG2076|consen 499 HEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE 544 (895)
T ss_pred HHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence 999988877743111 1222334567788888999999998765
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.5e-13 Score=130.20 Aligned_cols=280 Identities=18% Similarity=0.169 Sum_probs=225.3
Q ss_pred chhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChh
Q psy10738 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97 (609)
Q Consensus 18 ~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~ 97 (609)
.+...-.-+..|..+.-..+.++|+..|...++.+|... .+...||+.|...|+.+.|+..++..+....-. ..
T Consensus 31 qa~~lsr~Yv~GlNfLLs~Q~dKAvdlF~e~l~~d~~t~----e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT--~~ 104 (389)
T COG2956 31 QANRLSRDYVKGLNFLLSNQPDKAVDLFLEMLQEDPETF----EAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLT--FE 104 (389)
T ss_pred HHhhccHHHHhHHHHHhhcCcchHHHHHHHHHhcCchhh----HHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCc--hH
Confidence 333344455679999999999999999999999888754 478899999999999999999988766541111 23
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
....+...||.-|...|-++.|...|....+.-. ....++..|-.+|....+ |+
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e------fa~~AlqqLl~IYQ~tre--------------------W~ 158 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE------FAEGALQQLLNIYQATRE--------------------WE 158 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh------hhHHHHHHHHHHHHHhhH--------------------HH
Confidence 3567889999999999999999999987766433 555688899999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
+|++..++..++-.+ .....++..|..++..+....+++.|...+.+|++..++..- +-..+|.++...|+|+
T Consensus 159 KAId~A~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR------Asi~lG~v~~~~g~y~ 231 (389)
T COG2956 159 KAIDVAERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVR------ASIILGRVELAKGDYQ 231 (389)
T ss_pred HHHHHHHHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee------hhhhhhHHHHhccchH
Confidence 999988876665332 334667889999999999999999999999999998777654 7788999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
.|++.++.+++..+. ....+...|..+|..+|+.++.+.++.++.+.... ..+...++.+-....-.+
T Consensus 232 ~AV~~~e~v~eQn~~-----yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g-------~~~~l~l~~lie~~~G~~ 299 (389)
T COG2956 232 KAVEALERVLEQNPE-----YLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTG-------ADAELMLADLIELQEGID 299 (389)
T ss_pred HHHHHHHHHHHhChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCC-------ccHHHHHHHHHHHhhChH
Confidence 999999998886655 47888899999999999999999999998876554 234555666666666667
Q ss_pred HHHHHHHHHHH
Q psy10738 338 KALYFATKHLE 348 (609)
Q Consensus 338 ~A~~~~~~al~ 348 (609)
.|..++.+-+.
T Consensus 300 ~Aq~~l~~Ql~ 310 (389)
T COG2956 300 AAQAYLTRQLR 310 (389)
T ss_pred HHHHHHHHHHh
Confidence 77776655444
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.5e-14 Score=138.06 Aligned_cols=202 Identities=23% Similarity=0.224 Sum_probs=169.0
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..+...|++++|+..++++++..|.+. .++..+|.++...|++++|+.++++++.. .+....
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~~~~~~ 100 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDY----LAYLALALYYQQLGELEKAEDSFRRALTL------NPNNGD 100 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCCHH
Confidence 34555679999999999999999999999988764 47889999999999999999999999988 455667
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
++.++|.++...|++++|+.++.+++.... .......+..+|.++...|+ +++|..
T Consensus 101 ~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~ 156 (234)
T TIGR02521 101 VLNNYGTFLCQQGKYEQAMQQFEQAIEDPL----YPQPARSLENAGLCALKAGD--------------------FDKAEK 156 (234)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhccc----cccchHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 899999999999999999999999987422 22345678889999999999 999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
++.+++... +....++..+|.++...|++++|+.++++++...+ . ....+..++.++...|+.++|..
T Consensus 157 ~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~---~---~~~~~~~~~~~~~~~~~~~~a~~ 224 (234)
T TIGR02521 157 YLTRALQID------PQRPESLLELAELYYLRGQYKDARAYLERYQQTYN---Q---TAESLWLGIRIARALGDVAAAQR 224 (234)
T ss_pred HHHHHHHhC------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---C---CHHHHHHHHHHHHHHhhHHHHHH
Confidence 999998863 22345788999999999999999999999988722 1 12255578899999999999998
Q ss_pred HHHHHHHH
Q psy10738 262 HYKRTLVL 269 (609)
Q Consensus 262 ~~~~al~~ 269 (609)
+.+.....
T Consensus 225 ~~~~~~~~ 232 (234)
T TIGR02521 225 YGAQLQKL 232 (234)
T ss_pred HHHHHHhh
Confidence 87766543
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.3e-15 Score=141.03 Aligned_cols=240 Identities=15% Similarity=0.105 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
.++-....|.+|+..|-+.+|.+.++.+++..|. ...+..|+.+|....+...|+..+.+.++. .|...
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~-----~dTfllLskvY~ridQP~~AL~~~~~gld~------fP~~V 290 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPH-----PDTFLLLSKVYQRIDQPERALLVIGEGLDS------FPFDV 290 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCc-----hhHHHHHHHHHHHhccHHHHHHHHhhhhhc------CCchh
Confidence 3444445577888888888888888877776653 335677777787778888888777777776 66667
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
..+..++.++..++++++|.++|+.+++..+ ....+...+|.-|+..++ .+-|+
T Consensus 291 T~l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~--------------------PE~Al 344 (478)
T KOG1129|consen 291 TYLLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNN--------------------PEMAL 344 (478)
T ss_pred hhhhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCC--------------------hHHHH
Confidence 7777777788888888888888877777655 444555566777777777 77788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.||.+.+.+- ......+.|+|.+.+.-++++-++..|++++..+...+ ..+.+|+|+|.+....|++..|.
T Consensus 345 ryYRRiLqmG------~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~---~aaDvWYNlg~vaV~iGD~nlA~ 415 (478)
T KOG1129|consen 345 RYYRRILQMG------AQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG---QAADVWYNLGFVAVTIGDFNLAK 415 (478)
T ss_pred HHHHHHHHhc------CCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc---hhhhhhhccceeEEeccchHHHH
Confidence 8887777662 23345777788777777888888888877777654322 23447778888777788888777
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..|+-++....+ ...++.+||.+-...|+.++|..++..|-...+.
T Consensus 416 rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~ 461 (478)
T KOG1129|consen 416 RCFRLALTSDAQ------HGEALNNLAVLAARSGDILGARSLLNAAKSVMPD 461 (478)
T ss_pred HHHHHHhccCcc------hHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcc
Confidence 777766654433 3667777777777778888887777776665544
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=4.3e-14 Score=134.42 Aligned_cols=281 Identities=16% Similarity=0.134 Sum_probs=210.4
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
....+..|..++..|++..|+..|..|++.+|++.. +++..|.+|..+|+-.-|+..+.+++++ .+....
T Consensus 38 vekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~----aifrRaT~yLAmGksk~al~Dl~rVlel------KpDF~~ 107 (504)
T KOG0624|consen 38 VEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ----AIFRRATVYLAMGKSKAALQDLSRVLEL------KPDFMA 107 (504)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH----HHHHHHHHHhhhcCCccchhhHHHHHhc------CccHHH
Confidence 334445599999999999999999999999998744 7899999999999999999999999999 888999
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH---------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL---------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~---------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
+....|.++..+|++++|..-|...+...+..+... .....+......++..|+
T Consensus 108 ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD----------------- 170 (504)
T KOG0624|consen 108 ARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD----------------- 170 (504)
T ss_pred HHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc-----------------
Confidence 999999999999999999999999987655332111 112233444555666777
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
+..|+.+....+++ .++.+..+...+.+|...|+...|+.-++.+-++...+.+ .++.++.+++.
T Consensus 171 ---~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe------~~ykis~L~Y~ 235 (504)
T KOG0624|consen 171 ---CQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTE------GHYKISQLLYT 235 (504)
T ss_pred ---hhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchH------HHHHHHHHHHh
Confidence 89999999888887 5667778888888999999999998888888777665554 67777777777
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCcH--------------------------------------------HHHHHHHHHHH
Q psy10738 253 LGEYQAASEHYKRTLVLAQDLGDRA--------------------------------------------VEAQACYSLGN 288 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------~~~~~~~~la~ 288 (609)
.|+.+.++...++++++.++...-. ........+..
T Consensus 236 vgd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~ 315 (504)
T KOG0624|consen 236 VGDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCT 315 (504)
T ss_pred hhhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeee
Confidence 7777777776666666544432110 00111222344
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++..-|++-+|+....+++.+.++ .+.++...|.+|.....|+.|+.-|++|.++.
T Consensus 316 C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 316 CYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred cccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 555556666666666666655443 45678888888888888888888888888765
|
|
| >KOG0548|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.8e-13 Score=135.77 Aligned_cols=319 Identities=22% Similarity=0.263 Sum_probs=243.9
Q ss_pred hhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh
Q psy10738 6 ISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~ 73 (609)
=|......|+++.|+.++.-++. ..++...|+|.+|+.--.+.++++|.- +..|..+|..++-+
T Consensus 8 kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w----~kgy~r~Gaa~~~l 83 (539)
T KOG0548|consen 8 KGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDW----AKGYSRKGAALFGL 83 (539)
T ss_pred HHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCch----hhHHHHhHHHHHhc
Confidence 36667788888888888765543 667888899999999999999998874 55889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHc------------------------------------------------------------
Q psy10738 74 GDYQKAMQYHKQDLTLARNM------------------------------------------------------------ 93 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~------------------------------------------------------------ 93 (609)
|+|++|+..|.+.|+.-...
T Consensus 84 g~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 84 GDYEEAILAYSEGLEKDPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred ccHHHHHHHHHHHhhcCCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999888877531000
Q ss_pred ------------------------------------------------CChh------hHHHHHHHHHHHHHHcCCHHHH
Q psy10738 94 ------------------------------------------------EDKL------GEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 94 ------------------------------------------------~d~~------~~~~a~~~lg~~~~~~g~~~~A 119 (609)
.|.. ..+.....+|+..+...++..|
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a 243 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETA 243 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHH
Confidence 0000 0234456677788888888999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAA 198 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~ 198 (609)
+++|..++++... ..-+.+.+.+|...|. +..++....++++...+. .+...
T Consensus 244 ~q~y~~a~el~~~-------it~~~n~aA~~~e~~~--------------------~~~c~~~c~~a~E~gre~rad~kl 296 (539)
T KOG0548|consen 244 IQHYAKALELATD-------ITYLNNIAAVYLERGK--------------------YAECIELCEKAVEVGRELRADYKL 296 (539)
T ss_pred HHHHHHHHhHhhh-------hHHHHHHHHHHHhccH--------------------HHHhhcchHHHHHHhHHHHHHHHH
Confidence 9999999888742 2355677888888888 777777766666554433 12233
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh--------------------HHHHHHHHHHHHHHHHhCCHHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK--------------------AAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--------------------~~~~~~~~~la~~~~~~g~~~~ 258 (609)
++.++..+|..|...++++.|+.+|++++.-.+..... ...+.--..-|+.++..|+|..
T Consensus 297 Iak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~ 376 (539)
T KOG0548|consen 297 IAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPE 376 (539)
T ss_pred HHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHH
Confidence 56677779999999999999999999987654431000 0112233456999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.+|.+++...++ .+..|.+.|.+|.++|++..|+...++++++.+. ....|..-|.++..+.+|++
T Consensus 377 Av~~YteAIkr~P~------Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~------~~kgy~RKg~al~~mk~ydk 444 (539)
T KOG0548|consen 377 AVKHYTEAIKRDPE------DARLYSNRAACYLKLGEYPEALKDAKKCIELDPN------FIKAYLRKGAALRAMKEYDK 444 (539)
T ss_pred HHHHHHHHHhcCCc------hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCch------HHHHHHHHHHHHHHHHHHHH
Confidence 99999999987765 4889999999999999999999999999988554 56688899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
|++.|.++++.. +....+.-.+.++..++
T Consensus 445 Aleay~eale~d------p~~~e~~~~~~rc~~a~ 473 (539)
T KOG0548|consen 445 ALEAYQEALELD------PSNAEAIDGYRRCVEAQ 473 (539)
T ss_pred HHHHHHHHHhcC------chhHHHHHHHHHHHHHh
Confidence 999999999976 56667777777777765
|
|
| >KOG1129|consensus | Back alignment and domain information |
|---|
Probab=99.64 E-value=7.6e-15 Score=138.67 Aligned_cols=268 Identities=18% Similarity=0.185 Sum_probs=224.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhC---Cc--chhHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAG---TD--DLRTLS-AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~---~~--~~~~~a-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.+++...|...|-......+++. |. ..-... +.-..+|.||+.+|-+.+|.+.++.+++. ....+.
T Consensus 186 ey~fyhenDv~~aH~~~~~~~~~~~a~~s~~~~~~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-------~~~~dT 258 (478)
T KOG1129|consen 186 EYLFYHENDVQKAHSLCQAVLEVERAKPSGSTGCTLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-------FPHPDT 258 (478)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhccccccccchHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-------CCchhH
Confidence 346778888888887777776652 21 111111 23357899999999999999999999986 335678
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
+..|+.+|....+...|+..+.+.++..+ .....+..++.++..+++ +++|.++
T Consensus 259 fllLskvY~ridQP~~AL~~~~~gld~fP------~~VT~l~g~ARi~eam~~--------------------~~~a~~l 312 (478)
T KOG1129|consen 259 FLLLSKVYQRIDQPERALLVIGEGLDSFP------FDVTYLLGQARIHEAMEQ--------------------QEDALQL 312 (478)
T ss_pred HHHHHHHHHHhccHHHHHHHHhhhhhcCC------chhhhhhhhHHHHHHHHh--------------------HHHHHHH
Confidence 88999999999999999999999998887 667788899999999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
|+.+++. .+....+...+|.-|+.-++.+-|+.+|++.+.+--..+. .+.|+|.+.+..++++-++..
T Consensus 313 Yk~vlk~------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe------Lf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 313 YKLVLKL------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE------LFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHHHhc------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH------HHhhHHHHHHhhcchhhhHHH
Confidence 9999887 4555666777888899999999999999999988665555 899999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
|++|+..+... ...+.+|+++|.+....|++.-|...|+-++....+ .+.++.+||.+-.+.|+.++|..+
T Consensus 381 f~RAlstat~~---~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~------h~ealnNLavL~~r~G~i~~Arsl 451 (478)
T KOG1129|consen 381 FQRALSTATQP---GQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ------HGEALNNLAVLAARSGDILGARSL 451 (478)
T ss_pred HHHHHhhccCc---chhhhhhhccceeEEeccchHHHHHHHHHHhccCcc------hHHHHHhHHHHHhhcCchHHHHHH
Confidence 99999877533 335889999999999999999999999988865433 567999999999999999999999
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
+..|-.+.
T Consensus 452 l~~A~s~~ 459 (478)
T KOG1129|consen 452 LNAAKSVM 459 (478)
T ss_pred HHHhhhhC
Confidence 99887765
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.4e-14 Score=129.89 Aligned_cols=211 Identities=22% Similarity=0.219 Sum_probs=181.5
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10738 54 DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 54 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 133 (609)
.+....+.+...||.-|+..|++..|...+++|++. +|....+|..++.+|...|+.+.|.+.|++|+.+.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p-- 100 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAP-- 100 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCC--
Confidence 455667889999999999999999999999999999 899999999999999999999999999999999988
Q ss_pred CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q psy10738 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 134 ~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 213 (609)
..+.+++|.|..++..|+ +++|..+|++|+.. ..-.....++.|+|.|..+.
T Consensus 101 ----~~GdVLNNYG~FLC~qg~--------------------~~eA~q~F~~Al~~----P~Y~~~s~t~eN~G~Cal~~ 152 (250)
T COG3063 101 ----NNGDVLNNYGAFLCAQGR--------------------PEEAMQQFERALAD----PAYGEPSDTLENLGLCALKA 152 (250)
T ss_pred ----CccchhhhhhHHHHhCCC--------------------hHHHHHHHHHHHhC----CCCCCcchhhhhhHHHHhhc
Confidence 556699999999999999 99999999999864 33345577999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh
Q psy10738 214 GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 293 (609)
|+++.|.++|++++++.+.... ....++..++..|+|..|..+++........ .+..+.....+....
T Consensus 153 gq~~~A~~~l~raL~~dp~~~~------~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~------~A~sL~L~iriak~~ 220 (250)
T COG3063 153 GQFDQAEEYLKRALELDPQFPP------ALLELARLHYKAGDYAPARLYLERYQQRGGA------QAESLLLGIRIAKRL 220 (250)
T ss_pred CCchhHHHHHHHHHHhCcCCCh------HHHHHHHHHHhcccchHHHHHHHHHHhcccc------cHHHHHHHHHHHHHh
Confidence 9999999999999999988776 7788999999999999999999876543321 355666666777888
Q ss_pred CCHHHHHHHHHHHHHHHHH
Q psy10738 294 RDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 294 g~~~~A~~~~~~al~~~~~ 312 (609)
|+-+.|-.|-.+....++.
T Consensus 221 gd~~~a~~Y~~qL~r~fP~ 239 (250)
T COG3063 221 GDRAAAQRYQAQLQRLFPY 239 (250)
T ss_pred ccHHHHHHHHHHHHHhCCC
Confidence 9988888877665555443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=3.8e-15 Score=148.82 Aligned_cols=258 Identities=21% Similarity=0.205 Sum_probs=113.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
..+|.+++..|++++|++.+.+.+.... ++.....+..+|.+....++++.|+..|++.+...+ .....+
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~----~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~------~~~~~~ 81 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA----PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK------ANPQDY 81 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc----cccccccccccccccccccccccccccccccccccc------cccccc
Confidence 3669999999999999999977655421 244557888899999999999999999999987755 344456
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..++.+ ...++ +++|+.+++++.+.. + ....+.....++...|+++++...+
T Consensus 82 ~~l~~l-~~~~~--------------------~~~A~~~~~~~~~~~---~----~~~~l~~~l~~~~~~~~~~~~~~~l 133 (280)
T PF13429_consen 82 ERLIQL-LQDGD--------------------PEEALKLAEKAYERD---G----DPRYLLSALQLYYRLGDYDEAEELL 133 (280)
T ss_dssp ----------------------------------------------------------------H-HHHTT-HHHHHHHH
T ss_pred cccccc-ccccc--------------------ccccccccccccccc---c----ccchhhHHHHHHHHHhHHHHHHHHH
Confidence 667776 67788 999999988776542 2 1234556677889999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
+++..... .......+..+|.++...|++++|+..|+++++..|.. ..+...++.++...|+++++...+
T Consensus 134 ~~~~~~~~----~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~------~~~~~~l~~~li~~~~~~~~~~~l 203 (280)
T PF13429_consen 134 EKLEELPA----APDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDD------PDARNALAWLLIDMGDYDEAREAL 203 (280)
T ss_dssp HHHHH-T-------T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHhccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHCCChHHHHHHH
Confidence 99774221 11234578899999999999999999999999998863 667888999999999999988888
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.......+.... .+..+|.+|..+|++++|+.++++++... +....++..+|+++...|+.+.|..
T Consensus 204 ~~~~~~~~~~~~------~~~~la~~~~~lg~~~~Al~~~~~~~~~~------p~d~~~~~~~a~~l~~~g~~~~A~~ 269 (280)
T PF13429_consen 204 KRLLKAAPDDPD------LWDALAAAYLQLGRYEEALEYLEKALKLN------PDDPLWLLAYADALEQAGRKDEALR 269 (280)
T ss_dssp HHHHHH-HTSCC------HCHHHHHHHHHHT-HHHHHHHHHHHHHHS------TT-HHHHHHHHHHHT----------
T ss_pred HHHHHHCcCHHH------HHHHHHHHhcccccccccccccccccccc------ccccccccccccccccccccccccc
Confidence 887776644322 67789999999999999999999998765 6778999999999999999998865
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-14 Score=141.64 Aligned_cols=244 Identities=14% Similarity=-0.006 Sum_probs=178.2
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
+..+.++..+.+++.... .++...+..++.+|.+|...|++++|+..|++++++.+ ....+++++|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~~--~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P------~~~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASRD--LTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRP------DMADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHcccc--CCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHC
Confidence 466778888888775422 23456688999999999999999999999999999876 4577999999999999
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
|+ +++|+..|++++++ .+....++.++|.++...|++++|+..+++++++.+..
T Consensus 112 g~--------------------~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~ 165 (296)
T PRK11189 112 GN--------------------FDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND 165 (296)
T ss_pred CC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 99 99999999999988 45556789999999999999999999999999876543
Q ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HH
Q psy10738 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI---IA 310 (609)
Q Consensus 234 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---~~ 310 (609)
. . ...+. .+....+++++|+..+.++...... + .+ ..+.++...|++..+ ..+..+.. ..
T Consensus 166 ~--~--~~~~~---~l~~~~~~~~~A~~~l~~~~~~~~~--~------~~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~ 228 (296)
T PRK11189 166 P--Y--RALWL---YLAESKLDPKQAKENLKQRYEKLDK--E------QW-GWNIVEFYLGKISEE-TLMERLKAGATDN 228 (296)
T ss_pred H--H--HHHHH---HHHHccCCHHHHHHHHHHHHhhCCc--c------cc-HHHHHHHHccCCCHH-HHHHHHHhcCCCc
Confidence 2 1 11111 2344578899999999876533211 1 11 134555566766544 23333332 11
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
.++ ......+|+.+|.++...|++++|+.+|++++++. ++.....++.+.++....+.
T Consensus 229 ~~l--~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~-----~~~~~e~~~~~~e~~~~~~~ 286 (296)
T PRK11189 229 TEL--AERLCETYFYLAKYYLSLGDLDEAAALFKLALANN-----VYNFVEHRYALLELALLGQD 286 (296)
T ss_pred HHH--HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CchHHHHHHHHHHHHHHHhh
Confidence 121 12346699999999999999999999999999754 34556666666665555443
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.61 E-value=3.8e-13 Score=141.50 Aligned_cols=286 Identities=12% Similarity=0.016 Sum_probs=200.6
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH-H
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-A 100 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~-~ 100 (609)
......+|...+..|+++.|.+.+.++.+..|+.. ..+...|.++...|+++.|..++.++.+. .+.. .
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~----~~~llaA~aa~~~g~~~~A~~~l~~a~~~------~p~~~l 153 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPV----LNLIKAAEAAQQRGDEARANQHLEEAAEL------AGNDNI 153 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCcCch
Confidence 34556679999999999999999999888877542 25567788899999999999999998765 2222 2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+....+.++...|+++.|...+++.++..| ....++..++.+|...|+ +++|.
T Consensus 154 ~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P------~~~~~l~ll~~~~~~~~d--------------------~~~a~ 207 (409)
T TIGR00540 154 LVEIARTRILLAQNELHAARHGVDKLLEMAP------RHKEVLKLAEEAYIRSGA--------------------WQALD 207 (409)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHhh--------------------HHHHH
Confidence 2344458888999999999999998888766 444678888999999998 45444
Q ss_pred HHHHHHHHH-----------------------------------HHHhC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 181 KYYEQNLAL-----------------------------------MKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 181 ~~~~~al~~-----------------------------------~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
+.+.+.++. ..... .......++..+|..+...|++++|...++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~ 287 (409)
T TIGR00540 208 DIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIF 287 (409)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 444433321 00010 001235677788889999999999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 225 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
++++..++..... ............++.+.+++.++++++..+.. .. +.....+|.++...|++++|.++|+
T Consensus 288 ~~l~~~pd~~~~~----~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~---~~-~~ll~sLg~l~~~~~~~~~A~~~le 359 (409)
T TIGR00540 288 DGLKKLGDDRAIS----LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDK---PK-CCINRALGQLLMKHGEFIEAADAFK 359 (409)
T ss_pred HHHhhCCCcccch----hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCC---hh-HHHHHHHHHHHHHcccHHHHHHHHH
Confidence 9988765443211 01222233344577888888888887665542 11 2677789999999999999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 305 ~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
++..+... .+ ...+..+|.++...|+.++|..++++++...-.+++.
T Consensus 360 ~a~a~~~~-p~----~~~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~~~ 406 (409)
T TIGR00540 360 NVAACKEQ-LD----ANDLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQDN 406 (409)
T ss_pred HhHHhhcC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccccc
Confidence 54333221 11 2235588999999999999999999998887666554
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.2e-13 Score=125.30 Aligned_cols=207 Identities=20% Similarity=0.166 Sum_probs=177.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
....+.+...||.-|...|++..|...+++|+++.+ ....++..++.+|...|+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DP------s~~~a~~~~A~~Yq~~Ge-------------------- 84 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDP------SYYLAHLVRAHYYQKLGE-------------------- 84 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCC--------------------
Confidence 445678899999999999999999999999999988 677899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
.+.|.+.|++|+++ .+..+.+++|.|..++.+|++++|..+|++|+.. +.. ...+..+.|+|.|..+.|+
T Consensus 85 ~~~A~e~YrkAlsl------~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~-P~Y---~~~s~t~eN~G~Cal~~gq 154 (250)
T COG3063 85 NDLADESYRKALSL------APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD-PAY---GEPSDTLENLGLCALKAGQ 154 (250)
T ss_pred hhhHHHHHHHHHhc------CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC-CCC---CCcchhhhhhHHHHhhcCC
Confidence 99999999999999 4555669999999999999999999999999863 222 2234489999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
++.|.++|++++++.+.. ......++..+...|+|-.|..++++...... ..+..++...++-...|+
T Consensus 155 ~~~A~~~l~raL~~dp~~------~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~------~~A~sL~L~iriak~~gd 222 (250)
T COG3063 155 FDQAEEYLKRALELDPQF------PPALLELARLHYKAGDYAPARLYLERYQQRGG------AQAESLLLGIRIAKRLGD 222 (250)
T ss_pred chhHHHHHHHHHHhCcCC------ChHHHHHHHHHHhcccchHHHHHHHHHHhccc------ccHHHHHHHHHHHHHhcc
Confidence 999999999999998875 55778899999999999999999987654322 356788888889999999
Q ss_pred hHHHHHHHHHHHHHH
Q psy10738 336 HEKALYFATKHLEIS 350 (609)
Q Consensus 336 ~~~A~~~~~~al~l~ 350 (609)
.+.|-.|-.+....+
T Consensus 223 ~~~a~~Y~~qL~r~f 237 (250)
T COG3063 223 RAAAQRYQAQLQRLF 237 (250)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999888866655544
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.3e-12 Score=127.25 Aligned_cols=279 Identities=15% Similarity=0.087 Sum_probs=186.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
|.+++..|++++|+-.|+++.-++|.... ..-..|..+...|+++.-.......+.. ....+.-|+.-|.
T Consensus 239 ak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~----~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~------~~~ta~~wfV~~~ 308 (564)
T KOG1174|consen 239 GKCLYYNGDYFQAEDIFSSTLCANPDNVE----AMDLYAVLLGQEGGCEQDSALMDYLFAK------VKYTASHWFVHAQ 308 (564)
T ss_pred hhhhhhhcCchHHHHHHHHHhhCChhhhh----hHHHHHHHHHhccCHhhHHHHHHHHHhh------hhcchhhhhhhhh
Confidence 56666666666666666666666654432 3334445555556655555444444444 2223344555566
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
..+...++..|+.+.+++++..+ ....++...|.++...|+ .++|+-.|..|..
T Consensus 309 ~l~~~K~~~rAL~~~eK~I~~~~------r~~~alilKG~lL~~~~R--------------------~~~A~IaFR~Aq~ 362 (564)
T KOG1174|consen 309 LLYDEKKFERALNFVEKCIDSEP------RNHEALILKGRLLIALER--------------------HTQAVIAFRTAQM 362 (564)
T ss_pred hhhhhhhHHHHHHHHHHHhccCc------ccchHHHhccHHHHhccc--------------------hHHHHHHHHHHHh
Confidence 66666777777777777776655 445567777777777777 7777777777776
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH-HHHHHh-CCHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG-NSHIFL-GEYQAASEHYKRT 266 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la-~~~~~~-g~~~~A~~~~~~a 266 (609)
+ .|....+|..|-.+|...|.+.+|....+.++...+.... ++..+| .++... .--++|.++++++
T Consensus 363 L------ap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~------~LtL~g~~V~~~dp~~rEKAKkf~ek~ 430 (564)
T KOG1174|consen 363 L------APYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR------SLTLFGTLVLFPDPRMREKAKKFAEKS 430 (564)
T ss_pred c------chhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh------hhhhhcceeeccCchhHHHHHHHHHhh
Confidence 6 3455667777777777777777777777777776655433 555554 333322 2346777777777
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
+.+.|.. ..+...+|.++...|.++.++..+++++....+ ...+..||.++...+.+.+|+.+|..|
T Consensus 431 L~~~P~Y------~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 431 LKINPIY------TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred hccCCcc------HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 7766653 556778889999999999999999998887654 346778899999999999999999999
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHcC
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKALG 374 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~g 374 (609)
+.+. +....+...|-.+-+...
T Consensus 498 Lr~d------P~~~~sl~Gl~~lEK~~~ 519 (564)
T KOG1174|consen 498 LRQD------PKSKRTLRGLRLLEKSDD 519 (564)
T ss_pred HhcC------ccchHHHHHHHHHHhccC
Confidence 8865 455566666666655444
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.57 E-value=7.8e-13 Score=125.32 Aligned_cols=241 Identities=20% Similarity=0.167 Sum_probs=201.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
+..|.-+.-..+.++|+..|...++. ++...++...||+.|...|..+.|+..-+..++- +... ......++
T Consensus 39 Yv~GlNfLLs~Q~dKAvdlF~e~l~~------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s-pdlT-~~qr~lAl 110 (389)
T COG2956 39 YVKGLNFLLSNQPDKAVDLFLEMLQE------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES-PDLT-FEQRLLAL 110 (389)
T ss_pred HHhHHHHHhhcCcchHHHHHHHHHhc------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCCc-hHHHHHHH
Confidence 34566677778999999999999887 8888999999999999999999999987755432 2111 12456789
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..||.-|...|- ++.|...|....+. ......++..|-.+|....+|++|++..
T Consensus 111 ~qL~~Dym~aGl--------------------~DRAE~~f~~L~de------~efa~~AlqqLl~IYQ~treW~KAId~A 164 (389)
T COG2956 111 QQLGRDYMAAGL--------------------LDRAEDIFNQLVDE------GEFAEGALQQLLNIYQATREWEKAIDVA 164 (389)
T ss_pred HHHHHHHHHhhh--------------------hhHHHHHHHHHhcc------hhhhHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 999999999999 99999998876653 3344568889999999999999999998
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
++...+-++ .....++..|..+|..+....+.+.|...+.+|++..++. ..+-..+|.++...|+|++|++.+
T Consensus 165 ~~L~k~~~q-~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~c------vRAsi~lG~v~~~~g~y~~AV~~~ 237 (389)
T COG2956 165 ERLVKLGGQ-TYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKC------VRASIILGRVELAKGDYQKAVEAL 237 (389)
T ss_pred HHHHHcCCc-cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccc------eehhhhhhHHHHhccchHHHHHHH
Confidence 887766443 3345678899999999999999999999999999988875 677888999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
+.+++-. +.....+...|..+|..+|+.++.+.++.++.+..
T Consensus 238 e~v~eQn-----~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 238 ERVLEQN-----PEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred HHHHHhC-----hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 9988654 44577899999999999999999999999998865
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=99.56 E-value=2.2e-12 Score=133.76 Aligned_cols=318 Identities=16% Similarity=0.020 Sum_probs=224.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|+++.|...+.++.+..+.+.. ........|.++...|++++|...++++++. .|....++
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~ 80 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARAT-ERERAHVEALSAWIAGDLPKALALLEQLLDD------YPRDLLAL 80 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCC-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHH
Confidence 4455678888889999999999999988775542 3445667899999999999999999999987 44444555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
.. +..+...|++..+.....+++.. .....+....++..+|.++...|+ +++|+..+
T Consensus 81 ~~-~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~--------------------~~~A~~~~ 137 (355)
T cd05804 81 KL-HLGAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQ--------------------YDRAEEAA 137 (355)
T ss_pred HH-hHHHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Confidence 54 66777777766666666666554 233444667788899999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
++++++. +....++..+|.+++..|++++|+.++++++...+.. .......+..+|.++...|++++|+..|
T Consensus 138 ~~al~~~------p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~--~~~~~~~~~~la~~~~~~G~~~~A~~~~ 209 (355)
T cd05804 138 RRALELN------PDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCS--SMLRGHNWWHLALFYLERGDYEAALAIY 209 (355)
T ss_pred HHHHhhC------CCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCC--cchhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999973 3335688999999999999999999999999876542 2233446778999999999999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
++++...+.. ...........+...+...|....+..+ +......................+.++...|+.++|...+
T Consensus 210 ~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L 287 (355)
T cd05804 210 DTHIAPSAES-DPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLL 287 (355)
T ss_pred HHHhccccCC-ChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHH
Confidence 9986433211 1111110111233344445544444333 2222221111111112223346788889999999999999
Q ss_pred HHHHHHHHH---cCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 344 TKHLEISKQ---LGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 344 ~~al~l~~~---~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+........ .+.......+....+.++...|+...|+.
T Consensus 288 ~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~ 328 (355)
T cd05804 288 AALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALE 328 (355)
T ss_pred HHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHH
Confidence 998888877 45455567788888999999998877654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.56 E-value=2e-12 Score=135.32 Aligned_cols=272 Identities=12% Similarity=-0.008 Sum_probs=198.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH-
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE- 99 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~- 99 (609)
.....+.+|...+..|+|++|.+.+.++-+..+. + ...+...+.+....|+++.|..++.++.+. .+..
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p---~l~~llaA~aA~~~g~~~~A~~~l~~A~~~------~~~~~ 152 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-P---VVNYLLAAEAAQQRGDEARANQHLERAAEL------ADNDQ 152 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-h---HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCcch
Confidence 3445667899999999999999777776554322 2 223444466668999999999999999876 3332
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
.......+.++...|++++|+..+++..+..+ ....++..++.+|...|+ +++|
T Consensus 153 ~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P------~~~~al~ll~~~~~~~gd--------------------w~~a 206 (398)
T PRK10747 153 LPVEITRVRIQLARNENHAARHGVDKLLEVAP------RHPEVLRLAEQAYIRTGA--------------------WSSL 206 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHHHh--------------------HHHH
Confidence 22333458999999999999999999988776 456788889999999999 7777
Q ss_pred HHHHHHHHHHH-----------------------------------HHh-CChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 180 IKYYEQNLALM-----------------------------------KEI-NDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 180 ~~~~~~al~~~-----------------------------------~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
+..+.+..+.. +.. ...+....+...++..+...|+.++|...+
T Consensus 207 ~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L 286 (398)
T PRK10747 207 LDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQII 286 (398)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 65554443210 000 001123446677888999999999999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
+++++. ..++ . .. +.......+++++++..+++.++..++. +..+..+|.++...|++++|.++|
T Consensus 287 ~~~l~~---~~~~-~---l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~------~~l~l~lgrl~~~~~~~~~A~~~l 351 (398)
T PRK10747 287 LDGLKR---QYDE-R---LV--LLIPRLKTNNPEQLEKVLRQQIKQHGDT------PLLWSTLGQLLMKHGEWQEASLAF 351 (398)
T ss_pred HHHHhc---CCCH-H---HH--HHHhhccCCChHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHCCCHHHHHHHH
Confidence 888762 2221 1 11 1122234489999999888887666543 678889999999999999999999
Q ss_pred HHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 304 ~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++++...++ ...+..++.++.+.|+.++|..+|++++.+.
T Consensus 352 e~al~~~P~-------~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 352 RAALKQRPD-------AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred HHHHhcCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 999987544 2356789999999999999999999998865
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.8e-12 Score=136.35 Aligned_cols=270 Identities=11% Similarity=-0.023 Sum_probs=196.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.....|......|+++.|.+.+.++.+. .+.....+...|.++..+|+++.|..++.++.+..+.. ...
T Consensus 86 ~~~~~glla~~~g~~~~A~~~l~~~~~~------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-----~l~ 154 (409)
T TIGR00540 86 KQTEEALLKLAEGDYAKAEKLIAKNADH------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-----NIL 154 (409)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-----chH
Confidence 4456788888999999999999887776 44455667788999999999999999999987655421 112
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
+....+.++...|+ ++.|...+++.++. .|....++..++.++...|++++|+.
T Consensus 155 ~~~~~a~l~l~~~~--------------------~~~Al~~l~~l~~~------~P~~~~~l~ll~~~~~~~~d~~~a~~ 208 (409)
T TIGR00540 155 VEIARTRILLAQNE--------------------LHAARHGVDKLLEM------APRHKEVLKLAEEAYIRSGAWQALDD 208 (409)
T ss_pred HHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhhHHHHHH
Confidence 34445899999999 99999999988876 34445688899999999999999988
Q ss_pred HHHHHHHHH---HH-------------h----C-------------ChH---HHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 222 YHQERLKIA---RE-------------F----G-------------DKA---AERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 222 ~~~~al~~~---~~-------------~----~-------------~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
.+.+..+.. +. . . .+. .....+..+|..+...|++++|...+++
T Consensus 209 ~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~ 288 (409)
T TIGR00540 209 IIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFD 288 (409)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 887766320 00 0 0 000 1235677888999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
+++..++..... ............++.+++++.++++++..+... . ......+|.++...|++++|.++|++
T Consensus 289 ~l~~~pd~~~~~----~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~---~-~~ll~sLg~l~~~~~~~~~A~~~le~ 360 (409)
T TIGR00540 289 GLKKLGDDRAIS----LPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKP---K-CCINRALGQLLMKHGEFIEAADAFKN 360 (409)
T ss_pred HHhhCCCcccch----hHHHHHhhhcCCCChHHHHHHHHHHHHhCCCCh---h-HHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 998766532110 011222333445788888888888886644321 1 35788999999999999999999996
Q ss_pred HHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 346 HLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 346 al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+..+.. .+... ....++.++..+|+.+.|..
T Consensus 361 a~a~~~----~p~~~-~~~~La~ll~~~g~~~~A~~ 391 (409)
T TIGR00540 361 VAACKE----QLDAN-DLAMAADAFDQAGDKAEAAA 391 (409)
T ss_pred hHHhhc----CCCHH-HHHHHHHHHHHcCCHHHHHH
Confidence 444331 13333 35589999999999887744
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.2e-12 Score=130.31 Aligned_cols=227 Identities=17% Similarity=0.158 Sum_probs=179.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..+..+...|+.|...|++++|..+|.++.++....++....+.++...+.+|... + ++
T Consensus 33 ~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~--------------------~~ 91 (282)
T PF14938_consen 33 EAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-D--------------------PD 91 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-T--------------------HH
T ss_pred HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-C--------------------HH
Confidence 33555666678888899999999999999999999998888899999999998777 7 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL-GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 256 (609)
+|+.+|++++.++...+.....+.++..+|.+|... |++++|+++|++|++++...+.......++..+|.++...|+|
T Consensus 92 ~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y 171 (282)
T PF14938_consen 92 EAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRY 171 (282)
T ss_dssp HHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCH
Confidence 999999999999999999999999999999999999 9999999999999999999998888889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--c
Q psy10738 257 QAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--R 333 (609)
Q Consensus 257 ~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~ 333 (609)
++|++.|++........+ ........+...+.+++..||+..|...+++.....+...+ ..+......|-.++.. .
T Consensus 172 ~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~-s~E~~~~~~l~~A~~~~D~ 250 (282)
T PF14938_consen 172 EEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFAS-SREYKFLEDLLEAYEEGDV 250 (282)
T ss_dssp HHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTT-SHHHHHHHHHHHHHHTT-C
T ss_pred HHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHHHHhCCH
Confidence 999999999877543333 23334456677888999999999999999988777655444 3345566666666553 3
Q ss_pred CChHHHHHHHHHH
Q psy10738 334 GNHEKALYFATKH 346 (609)
Q Consensus 334 g~~~~A~~~~~~a 346 (609)
..+..|+.-|...
T Consensus 251 e~f~~av~~~d~~ 263 (282)
T PF14938_consen 251 EAFTEAVAEYDSI 263 (282)
T ss_dssp CCHHHHCHHHTTS
T ss_pred HHHHHHHHHHccc
Confidence 3455555555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=99.55 E-value=2.1e-12 Score=128.52 Aligned_cols=232 Identities=20% Similarity=0.263 Sum_probs=186.5
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+.+..+..|...|+.|...|++++|...|.++.....+.++....+.++...+.+|... ++++|+.+|+++++++...+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G 108 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG 108 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC
Confidence 34445667777899999999999999999999999999999999999999999998776 99999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q psy10738 135 DKLSEGRALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 213 (609)
.....+.++..+|.+|... |+ +++|+++|++|++++...+.......++..+|.++..+
T Consensus 109 ~~~~aA~~~~~lA~~ye~~~~d--------------------~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l 168 (282)
T PF14938_consen 109 RFSQAAKCLKELAEIYEEQLGD--------------------YEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARL 168 (282)
T ss_dssp -HHHHHHHHHHHHHHHCCTT----------------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999 99 99999999999999999998888899999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 214 GNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
|+|++|+..|++........+. .......+...+.+++..|++..|...+++.....+...+. ........|-.++..
T Consensus 169 ~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s-~E~~~~~~l~~A~~~ 247 (282)
T PF14938_consen 169 GRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASS-REYKFLEDLLEAYEE 247 (282)
T ss_dssp T-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHh
Confidence 9999999999998776543332 33444566788889999999999999999888776655442 345566666666653
Q ss_pred --hCCHHHHHHHHHHHHH
Q psy10738 293 --LRDYPTAIDYHLRHLI 308 (609)
Q Consensus 293 --~g~~~~A~~~~~~al~ 308 (609)
...+++|+.-|.....
T Consensus 248 ~D~e~f~~av~~~d~~~~ 265 (282)
T PF14938_consen 248 GDVEAFTEAVAEYDSISR 265 (282)
T ss_dssp T-CCCHHHHCHHHTTSS-
T ss_pred CCHHHHHHHHHHHcccCc
Confidence 3457777777665443
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=8e-12 Score=139.50 Aligned_cols=346 Identities=11% Similarity=-0.041 Sum_probs=190.3
Q ss_pred hhhhHhhhcCCCcchhHHHHH------------HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLEL------------ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l------------~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+..++...|+.+.|...++. ...|..+...|++++|++.|+++++..|+++. ++..++..|..
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~----~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD----LISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHhh
Confidence 455666777888888875543 33377888999999999999999999999865 55677899999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.++.++|+..+++++.. .+... .+..++.++...++..+|+..++++++..+.. ..++..+..+...
T Consensus 149 ~~q~~eAl~~l~~l~~~------dp~~~-~~l~layL~~~~~~~~~AL~~~ekll~~~P~n------~e~~~~~~~~l~~ 215 (822)
T PRK14574 149 AGRGGVVLKQATELAER------DPTVQ-NYMTLSYLNRATDRNYDALQASSEAVRLAPTS------EEVLKNHLEILQR 215 (822)
T ss_pred cCCHHHHHHHHHHhccc------CcchH-HHHHHHHHHHhcchHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999998887 34322 23455666666788877999999999886622 2222222232222
Q ss_pred cccccccCC--CCCCCCCc--------------------------hHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHH--
Q psy10738 153 KGKAIGKVG--QQDPGEYP--------------------------EEVKVCLQEAIKYYEQNLALMKEIND-TAAQGR-- 201 (609)
Q Consensus 153 ~g~~~~~~~--~~~~~~~~--------------------------~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~-- 201 (609)
.|-...+.. ...|.-+. .+.....+.|+.-+++.+........ .+....
T Consensus 216 ~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~ 295 (822)
T PRK14574 216 NRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRAR 295 (822)
T ss_pred cCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHH
Confidence 222100000 00110010 11111233344444333332221110 011122
Q ss_pred ---------------------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 202 ---------------------------------ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248 (609)
Q Consensus 202 ---------------------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 248 (609)
+....|..|...++.++|+..|++++.-................|-.
T Consensus 296 ~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~y 375 (822)
T PRK14574 296 IDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYY 375 (822)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHH
Confidence 33344555555555555555555544332211011111222344555
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHH-c--------CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQD-L--------GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~-~--------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 319 (609)
+|+..++|++|..++++.....+- . ........+...++.++...|++.+|.+.+++.+..++. .
T Consensus 376 A~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~------n 449 (822)
T PRK14574 376 SLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA------N 449 (822)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------C
Confidence 555666666666666655543331 0 011223355555666666666666666666666555443 2
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 320 ~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
..+...+|.++...|.+.+|...++.+..+. +....+...++.++..+|+...+
T Consensus 450 ~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~------P~~~~~~~~~~~~al~l~e~~~A 503 (822)
T PRK14574 450 QNLRIALASIYLARDLPRKAEQELKAVESLA------PRSLILERAQAETAMALQEWHQM 503 (822)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC------CccHHHHHHHHHHHHhhhhHHHH
Confidence 3355566666666666666666665555442 44455666666666666665443
|
|
| >KOG0550|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=8e-13 Score=129.06 Aligned_cols=270 Identities=17% Similarity=0.156 Sum_probs=217.3
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+|..+.....+..++..+..+.. +..+...|+|++|....++.+++.++... .+...+.++..
T Consensus 54 ~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~~~k----~~~r~~~c~~a 129 (486)
T KOG0550|consen 54 EEGNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRLKDGFSK----GQLREGQCHLA 129 (486)
T ss_pred hhcchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheecCCCccc----cccchhhhhhh
Confidence 345666666666666666655544 77888999999999999999999887644 56677888888
Q ss_pred hCCHHHHHHHHHHHH------------HHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 73 LGDYQKAMQYHKQDL------------TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 73 ~g~~~~A~~~~~~al------------~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
+++..+|.+.++..- .++......|....+-..-+.++...|++++|....-..+++.. ...
T Consensus 130 ~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld~------~n~ 203 (486)
T KOG0550|consen 130 LSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDILKLDA------TNA 203 (486)
T ss_pred hHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHHHhccc------chh
Confidence 888777776665221 11111122355566777788999999999999998888887766 677
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHcC
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND------TAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~lg~~~~~~g 214 (609)
.+++..|.+++..++ .+.|+.+|++++.+.+...+ .+.....+..-|+-.+..|
T Consensus 204 ~al~vrg~~~yy~~~--------------------~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G 263 (486)
T KOG0550|consen 204 EALYVRGLCLYYNDN--------------------ADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNG 263 (486)
T ss_pred HHHHhcccccccccc--------------------hHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhcc
Confidence 899999999999999 99999999999988665432 2334567778899999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 294 (609)
+|..|.++|.++|.+.+.+.. ..+..|.+.|.+...+|+..+|+.-.+.++.+.+.. ..++...|.++..++
T Consensus 264 ~y~~A~E~Yteal~idP~n~~--~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~sy------ikall~ra~c~l~le 335 (486)
T KOG0550|consen 264 NYRKAYECYTEALNIDPSNKK--TNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSY------IKALLRRANCHLALE 335 (486)
T ss_pred chhHHHHHHHHhhcCCccccc--hhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHH------HHHHHHHHHHHHHHH
Confidence 999999999999999888544 445699999999999999999999999999998874 889999999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~ 312 (609)
+|++|.+.|+++++....
T Consensus 336 ~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 336 KWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHhhccc
Confidence 999999999999987665
|
|
| >KOG1125|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=4.2e-13 Score=136.60 Aligned_cols=256 Identities=17% Similarity=0.122 Sum_probs=199.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
+..|..++..|+..+|.-.|+.++.. .|..+.+|..||.+....++-..|+..+++++++.+ ....++
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP------~NleaL 356 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ------DPQHAEAWQKLGITQAENENEQNAISALRRCLELDP------TNLEAL 356 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCC------ccHHHH
Confidence 56789999999999999999999998 899999999999999999999999999999999987 677899
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-----------HHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT-----------YYL 212 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~-----------~~~ 212 (609)
..||..|...|. -.+|..++.+=+..-... ..+... ...
T Consensus 357 maLAVSytNeg~--------------------q~~Al~~L~~Wi~~~p~y----------~~l~~a~~~~~~~~~~s~~~ 406 (579)
T KOG1125|consen 357 MALAVSYTNEGL--------------------QNQALKMLDKWIRNKPKY----------VHLVSAGENEDFENTKSFLD 406 (579)
T ss_pred HHHHHHHhhhhh--------------------HHHHHHHHHHHHHhCccc----------hhccccCccccccCCcCCCC
Confidence 999999999998 888998888766542111 000000 000
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
...+..-.++|..+....+... -..+...||.+|...|+|++|+.+|+.|+...|.. ...|..||-++..
T Consensus 407 ~~~l~~i~~~fLeaa~~~~~~~----DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd------~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 407 SSHLAHIQELFLEAARQLPTKI----DPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPND------YLLWNRLGATLAN 476 (579)
T ss_pred HHHHHHHHHHHHHHHHhCCCCC----ChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCch------HHHHHHhhHHhcC
Confidence 0011122233333322222111 12388899999999999999999999999987763 7799999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch----HHHHHHHHHH
Q psy10738 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG----QVTAQMNVTD 368 (609)
Q Consensus 293 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~----~~~a~~~la~ 368 (609)
..+.++|+..|.+|+++-+. ..++.++||..+..+|.|++|..+|-.|+.+.+....... ...++..|-.
T Consensus 477 ~~~s~EAIsAY~rALqLqP~------yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~ 550 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPG------YVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRL 550 (579)
T ss_pred CcccHHHHHHHHHHHhcCCC------eeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHH
Confidence 99999999999999998765 5679999999999999999999999999999887433222 2456666666
Q ss_pred HHHHcCCCC
Q psy10738 369 LRKALGMST 377 (609)
Q Consensus 369 l~~~~g~~~ 377 (609)
++..+++++
T Consensus 551 als~~~~~D 559 (579)
T KOG1125|consen 551 ALSAMNRSD 559 (579)
T ss_pred HHHHcCCch
Confidence 677777654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.3e-11 Score=139.51 Aligned_cols=319 Identities=15% Similarity=0.043 Sum_probs=203.5
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE-------------GERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGN 68 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~-------------g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~ 68 (609)
++.|-.++.+.|+.+.|...+..... -..+.+.|++++|..+|++..+.+.. | ...|..+..
T Consensus 440 yn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~Pd----vvTynaLI~ 515 (1060)
T PLN03218 440 FNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEAN----VHTFGALID 515 (1060)
T ss_pred HHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCC----HHHHHHHHH
Confidence 45566677777777777776665544 35677788888888888888765432 2 336777778
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
.|...|++++|+..|...... +-.+ ....|..+...|...|++++|...+.+......... ....+|..+..
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~----Gv~P-D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~---PD~vTynaLI~ 587 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSK----NVKP-DRVVFNALISACGQSGAVDRAFDVLAEMKAETHPID---PDHITVGALMK 587 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCC---CcHHHHHHHHH
Confidence 888888888888887776543 2122 245677778888888888888888877654311111 12346677777
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.|...|+ +++|.+.|++..+. + ......+|..+...|...|++++|+..|.+...
T Consensus 588 ay~k~G~--------------------ldeA~elf~~M~e~----g-i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~ 642 (1060)
T PLN03218 588 ACANAGQ--------------------VDRAKEVYQMIHEY----N-IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKK 642 (1060)
T ss_pred HHHHCCC--------------------HHHHHHHHHHHHHc----C-CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 7888888 88888888765543 1 111235677777788888888888888877654
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.- -.+. ...|..+...|...|++++|.+++.+..+... .....++..+...|.+.|++++|...|++...
T Consensus 643 ~G---v~PD--~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~-----~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~ 712 (1060)
T PLN03218 643 KG---VKPD--EVFFSALVDVAGHAGDLDKAFEILQDARKQGI-----KLGTVSYSSLMGACSNAKNWKKALELYEDIKS 712 (1060)
T ss_pred cC---CCCC--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 21 0111 23666777777888888888877777654211 11244677777788888888888887776543
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
. +- ......|..+...|.+.|++++|..++++... .|-.+. ...+..+...+...|+.+.
T Consensus 713 ~----g~-~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~----~Gi~Pd-~~Ty~sLL~a~~k~G~le~ 772 (1060)
T PLN03218 713 I----KL-RPTVSTMNALITALCEGNQLPKALEVLSEMKR----LGLCPN-TITYSILLVASERKDDADV 772 (1060)
T ss_pred c----CC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHH
Confidence 2 11 11234577777777888888888877776543 222233 2334444455555555443
|
|
| >KOG1174|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=9.8e-12 Score=121.33 Aligned_cols=297 Identities=14% Similarity=0.077 Sum_probs=237.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHH--HHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~a--l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
++.+...+...+..++...|...+--+ ...-|++.. .+..+|.+++..|++.+|+..|+++.-+ ++..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~Nvh----Ll~~lak~~~~~Gdn~~a~~~Fe~~~~~------dpy~ 265 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEH----LMMALGKCLYYNGDYFQAEDIFSSTLCA------NPDN 265 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHH----HHHHHhhhhhhhcCchHHHHHHHHHhhC------Chhh
Confidence 445555677777777777666655444 344566643 7788999999999999999999999988 8888
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
..+.-..|..+...|+++.-.......+.+.. ..+.-++.-|.+.+...+ +..|
T Consensus 266 i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~------~ta~~wfV~~~~l~~~K~--------------------~~rA 319 (564)
T KOG1174|consen 266 VEAMDLYAVLLGQEGGCEQDSALMDYLFAKVK------YTASHWFVHAQLLYDEKK--------------------FERA 319 (564)
T ss_pred hhhHHHHHHHHHhccCHhhHHHHHHHHHhhhh------cchhhhhhhhhhhhhhhh--------------------HHHH
Confidence 88888999999999999887777666666554 333445566677777778 9999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
+.+.++++.. .+....++...|.++...|+.++|+-.|+.|..+.+-.-+ +|-.|-.+|...|.+.+|
T Consensus 320 L~~~eK~I~~------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~------~Y~GL~hsYLA~~~~kEA 387 (564)
T KOG1174|consen 320 LNFVEKCIDS------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE------IYRGLFHSYLAQKRFKEA 387 (564)
T ss_pred HHHHHHHhcc------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH------HHHHHHHHHHhhchHHHH
Confidence 9999999987 4555678999999999999999999999999988765433 899999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHH-HHHH-HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLG-NTYT-LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la-~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~ 337 (609)
......++...+.. +.++..+| .++. .-.--++|.+++++++.+.+. ...+-..+|+++...|.++
T Consensus 388 ~~~An~~~~~~~~s------A~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~------Y~~AV~~~AEL~~~Eg~~~ 455 (564)
T KOG1174|consen 388 NALANWTIRLFQNS------ARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI------YTPAVNLIAELCQVEGPTK 455 (564)
T ss_pred HHHHHHHHHHhhcc------hhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc------cHHHHHHHHHHHHhhCccc
Confidence 99999999988875 66777675 3333 233468999999999987654 4557888999999999999
Q ss_pred HHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchh
Q psy10738 338 KALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSL 385 (609)
Q Consensus 338 ~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~ 385 (609)
.++..+++++..+ .....+..||++..+.+.+.+++...+.
T Consensus 456 D~i~LLe~~L~~~-------~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ 496 (564)
T KOG1174|consen 456 DIIKLLEKHLIIF-------PDVNLHNHLGDIMRAQNEPQKAMEYYYK 496 (564)
T ss_pred hHHHHHHHHHhhc-------cccHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 9999999999876 3456788899999999998888765444
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1e-10 Score=134.28 Aligned_cols=297 Identities=13% Similarity=0.033 Sum_probs=228.2
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH-------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE-------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGN 68 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~-------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~ 68 (609)
+++.|...|.+.|+.+.|..++..... ...|++.|++++|+.+|......+-. +. ...|..+..
T Consensus 474 tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~-PD--~vTYnsLI~ 550 (1060)
T PLN03218 474 LYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVK-PD--RVVFNALIS 550 (1060)
T ss_pred HHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCC-CC--HHHHHHHHH
Confidence 467788899999999999888876653 45789999999999999999875421 11 347899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
.|...|++++|.+.+.+...... +-.+ ....|..+...|...|++++|.+.|++..+.. .......|..+..
T Consensus 551 a~~k~G~~deA~~lf~eM~~~~~--gi~P-D~vTynaLI~ay~k~G~ldeA~elf~~M~e~g-----i~p~~~tynsLI~ 622 (1060)
T PLN03218 551 ACGQSGAVDRAFDVLAEMKAETH--PIDP-DHITVGALMKACANAGQVDRAKEVYQMIHEYN-----IKGTPEVYTIAVN 622 (1060)
T ss_pred HHHHCCCHHHHHHHHHHHHHhcC--CCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----CCCChHHHHHHHH
Confidence 99999999999999998765311 1122 24678888889999999999999999876531 1123457889999
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.|...|+ +++|+..|.+.... +-.+. ..+|..+...|...|++++|.+++.+..+
T Consensus 623 ay~k~G~--------------------~deAl~lf~eM~~~----Gv~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k 677 (1060)
T PLN03218 623 SCSQKGD--------------------WDFALSIYDDMKKK----GVKPD-EVFFSALVDVAGHAGDLDKAFEILQDARK 677 (1060)
T ss_pred HHHhcCC--------------------HHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 9999999 99999999886543 22222 45788899999999999999999998765
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
.-. .....+|..+...|.+.|++++|...|++..... . . ....+|..+...|.+.|++++|++++.+...
T Consensus 678 ~G~-----~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g--~-~--PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 678 QGI-----KLGTVSYSSLMGACSNAKNWKKALELYEDIKSIK--L-R--PTVSTMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred cCC-----CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcC--C-C--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 311 1112478899999999999999999998765421 1 1 1246788999999999999999999998753
Q ss_pred HHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 309 ~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
. +-. .....|..+...+.+.|++++|..++.+..+.
T Consensus 748 ~----Gi~-Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~ 783 (1060)
T PLN03218 748 L----GLC-PNTITYSILLVASERKDDADVGLDLLSQAKED 783 (1060)
T ss_pred c----CCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 2 211 12346677778999999999999999987653
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=6.6e-12 Score=141.64 Aligned_cols=252 Identities=12% Similarity=0.031 Sum_probs=145.8
Q ss_pred chhhhhhHhhhcCCCcchhHHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHH------------
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLEL---------ALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTL------------ 59 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l---------~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~------------ 59 (609)
+++.|...|.+.|+.+.|...+.. ......+.+.|++++|+.+|++.++.+.. +....
T Consensus 160 ~~n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~ 239 (697)
T PLN03081 160 MMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGS 239 (697)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCc
Confidence 356677788888888877776642 23356677788888888888887765321 10000
Q ss_pred -------------------HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 60 -------------------SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 60 -------------------a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
..++..+...|...|++++|...|+... .....+|..+...|...|++++|+
T Consensus 240 ~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~---------~~~~vt~n~li~~y~~~g~~~eA~ 310 (697)
T PLN03081 240 ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP---------EKTTVAWNSMLAGYALHGYSEEAL 310 (697)
T ss_pred HHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCC---------CCChhHHHHHHHHHHhCCCHHHHH
Confidence 1234567788888899998888887542 124567888888888888888888
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200 (609)
Q Consensus 121 ~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 200 (609)
..|.+.... +-. ....++..+...+...|+ +++|...+...++.. - ....
T Consensus 311 ~lf~~M~~~----g~~-pd~~t~~~ll~a~~~~g~--------------------~~~a~~i~~~m~~~g----~-~~d~ 360 (697)
T PLN03081 311 CLYYEMRDS----GVS-IDQFTFSIMIRIFSRLAL--------------------LEHAKQAHAGLIRTG----F-PLDI 360 (697)
T ss_pred HHHHHHHHc----CCC-CCHHHHHHHHHHHHhccc--------------------hHHHHHHHHHHHHhC----C-CCCe
Confidence 888876542 111 122356666777777777 666666666554431 0 1112
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
.++..+...|.+.|++++|...|++..+ .+ ..+|+.+...|...|+.++|++.|++...... . ...
T Consensus 361 ~~~~~Li~~y~k~G~~~~A~~vf~~m~~-----~d----~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~----~-Pd~ 426 (697)
T PLN03081 361 VANTALVDLYSKWGRMEDARNVFDRMPR-----KN----LISWNALIAGYGNHGRGTKAVEMFERMIAEGV----A-PNH 426 (697)
T ss_pred eehHHHHHHHHHCCCHHHHHHHHHhCCC-----CC----eeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----C-CCH
Confidence 3455555556666666666655554321 00 12455555555555555555555555432110 0 012
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.++..+...+...|..++|..+|+..
T Consensus 427 ~T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 427 VTFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred HHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 23444444444455555555554443
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=2.7e-11 Score=126.81 Aligned_cols=253 Identities=12% Similarity=0.002 Sum_probs=189.2
Q ss_pred hhHhhhcCCCcchhHHHH------------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC
Q psy10738 7 SSSDSQSGGADGGNMCLE------------LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG 74 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~------------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g 74 (609)
|......|+++.|..+.. +.+.+......|+++.|..+|.++.+..|++.. ......+.++...|
T Consensus 91 gl~a~~eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~---~~~l~~a~l~l~~g 167 (398)
T PRK10747 91 ALLKLAEGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQL---PVEITRVRIQLARN 167 (398)
T ss_pred HHHHHhCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchH---HHHHHHHHHHHHCC
Confidence 334444566665554443 233367779999999999999999998887532 12234588999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH----------------------
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ---------------------- 132 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~---------------------- 132 (609)
++++|+..+++..+. .|....++..++.+|...|++++|+..+.+..+....
T Consensus 168 ~~~~Al~~l~~~~~~------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~ 241 (398)
T PRK10747 168 ENHAARHGVDKLLEV------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMA 241 (398)
T ss_pred CHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999888 7778899999999999999999999777665532100
Q ss_pred cCC--------------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 133 LND--------------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 133 ~~d--------------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
..+ ......+...++..+...|+ .++|...++++++. ...+.
T Consensus 242 ~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~--------------------~~~A~~~L~~~l~~----~~~~~ 297 (398)
T PRK10747 242 DQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDD--------------------HDTAQQIILDGLKR----QYDER 297 (398)
T ss_pred hcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhc----CCCHH
Confidence 000 01124466677888888888 99999999888762 11222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
....+ +. ...++++++++.+++.++..++... .+..+|.++...|++++|.++|+++++..+.
T Consensus 298 l~~l~---~~--l~~~~~~~al~~~e~~lk~~P~~~~------l~l~lgrl~~~~~~~~~A~~~le~al~~~P~------ 360 (398)
T PRK10747 298 LVLLI---PR--LKTNNPEQLEKVLRQQIKQHGDTPL------LWSTLGQLLMKHGEWQEASLAFRAALKQRPD------ 360 (398)
T ss_pred HHHHH---hh--ccCCChHHHHHHHHHHHhhCCCCHH------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC------
Confidence 22222 22 2449999999999988876554443 7888999999999999999999999988654
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
...+..++.++...|+.++|..+|++++.+.
T Consensus 361 -~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~ 391 (398)
T PRK10747 361 -AYDYAWLADALDRLHKPEEAAAMRRDGLMLT 391 (398)
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence 4556789999999999999999999998765
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.8e-10 Score=121.12 Aligned_cols=322 Identities=14% Similarity=0.118 Sum_probs=208.6
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAG--TDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~a~~~~~lg~~~ 70 (609)
.|.-++...|++..+..+++.+.. +..+...|.-..|+.+++..+... |.++. ..+..-..++
T Consensus 328 ~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s---~~Lmasklc~ 404 (799)
T KOG4162|consen 328 HLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDIS---VLLMASKLCI 404 (799)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcch---HHHHHHHHHH
Confidence 345556666777766666665443 555666677777777777777766 44433 2333334455
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-----------YDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...+.+++++.|..+++..+... .....+.++..+|.+|..+-. ..+++..++++++..+ ..
T Consensus 405 e~l~~~eegldYA~kai~~~~~~-~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~------~d 477 (799)
T KOG4162|consen 405 ERLKLVEEGLDYAQKAISLLGGQ-RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP------TD 477 (799)
T ss_pred hchhhhhhHHHHHHHHHHHhhhh-hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC------CC
Confidence 56788888888888888765322 233345566666666654321 3344555555544433 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+.++++.-|...++ .+.|..+..+++++. ....+.+|..++.++...+++.+|
T Consensus 478 p~~if~lalq~A~~R~--------------------l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~~A 532 (799)
T KOG4162|consen 478 PLVIFYLALQYAEQRQ--------------------LTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLKEA 532 (799)
T ss_pred chHHHHHHHHHHHHHh--------------------HHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhHHH
Confidence 3455666666666666 666666666666552 122334555555555555555555
Q ss_pred HHHHHHHHHHHHHh--------------CCh-------------------------------------------------
Q psy10738 220 IYYHQERLKIAREF--------------GDK------------------------------------------------- 236 (609)
Q Consensus 220 ~~~~~~al~~~~~~--------------~~~------------------------------------------------- 236 (609)
+....-+++-.+.+ ++.
T Consensus 533 l~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~ 612 (799)
T KOG4162|consen 533 LDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAIST 612 (799)
T ss_pred HHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchh
Confidence 55555444433320 000
Q ss_pred ----------------------------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 237 ----------------------------------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 237 ----------------------------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
......|...+..+...++.++|..++.++-.+.+. .+..
T Consensus 613 sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l------~~~~ 686 (799)
T KOG4162|consen 613 SRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL------SASV 686 (799)
T ss_pred hHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh------hHHH
Confidence 001223445666777777777887777777777655 4788
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHH--HHHHHHHHHHHcCCCchHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY--FATKHLEISKQLGDPLGQV 360 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~--~~~~al~l~~~~~~~~~~~ 360 (609)
|+..|.++...|++.+|.+.|..|+.+.+. ...+...+|.++...|+..-|.. ++..++++. +...
T Consensus 687 ~~~~G~~~~~~~~~~EA~~af~~Al~ldP~------hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d------p~n~ 754 (799)
T KOG4162|consen 687 YYLRGLLLEVKGQLEEAKEAFLVALALDPD------HVPSMTALAELLLELGSPRLAEKRSLLSDALRLD------PLNH 754 (799)
T ss_pred HHHhhHHHHHHHhhHHHHHHHHHHHhcCCC------CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC------CCCH
Confidence 899999999999999999999999988765 34578889999999998888877 888888876 7778
Q ss_pred HHHHHHHHHHHHcCCCCCC
Q psy10738 361 TAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 361 ~a~~~la~l~~~~g~~~~a 379 (609)
.+++.+|.+.++.|+...|
T Consensus 755 eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 755 EAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred HHHHHHHHHHHHccchHHH
Confidence 9999999999999997755
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.40 E-value=1.6e-10 Score=129.22 Aligned_cols=327 Identities=10% Similarity=-0.045 Sum_probs=213.9
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~ 72 (609)
.+|.++...|++++|+..+..+++ +..+...++.++|+..+++++...|.... +..++.++..
T Consensus 107 alA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~-----~l~layL~~~ 181 (822)
T PRK14574 107 SAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQN-----YMTLSYLNRA 181 (822)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHH-----HHHHHHHHHh
Confidence 347788999999999998887665 67788899999999999999999887432 2334555555
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH--------------------------
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH-------------------------- 126 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a-------------------------- 126 (609)
.++..+|+..++++++. .|....++..+..++...|-...|.+...+.
T Consensus 182 ~~~~~~AL~~~ekll~~------~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~ 255 (822)
T PRK14574 182 TDRNYDALQASSEAVRL------APTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVL 255 (822)
T ss_pred cchHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhccc
Confidence 67777799999999988 5666666666666666666554444443321
Q ss_pred ---------------HHHHHHc----CC-c---HHHHHHHHHHHHHHHHcccccccCC----CC-CCCCCch---HhHHh
Q psy10738 127 ---------------LEISRQL----ND-K---LSEGRALYNLGNVYHAKGKAIGKVG----QQ-DPGEYPE---EVKVC 175 (609)
Q Consensus 127 ---------------l~l~~~~----~d-~---~~~~~~~~~lg~~~~~~g~~~~~~~----~~-~~~~~~~---~~~~~ 175 (609)
+.....+ +. + .....+....-.++...|++..... .. ...+.|. .+..+
T Consensus 256 ~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~ad 335 (822)
T PRK14574 256 PTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAAS 335 (822)
T ss_pred ccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHH
Confidence 1111110 00 1 0111111111122222222000000 00 0001111 11111
Q ss_pred -------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH-h--------CChHHH
Q psy10738 176 -------LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-F--------GDKAAE 239 (609)
Q Consensus 176 -------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~--------~~~~~~ 239 (609)
.++|+..|..++.-.......+........|-..|...++|++|..++++..+..+- . ......
T Consensus 336 ayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~ 415 (822)
T PRK14574 336 AYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDW 415 (822)
T ss_pred HHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccH
Confidence 444555554443321110011222334577888899999999999999998875441 0 112334
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhH
Q psy10738 240 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319 (609)
Q Consensus 240 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 319 (609)
..+...++.++...|++.+|++.+++.+...|.. ..+...+|.++...|.+.+|...++.++.+.+. .
T Consensus 416 ~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n------~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~------~ 483 (822)
T PRK14574 416 IEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPAN------QNLRIALASIYLARDLPRKAEQELKAVESLAPR------S 483 (822)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCc------c
Confidence 5888899999999999999999999998888764 778889999999999999999999888877544 3
Q ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 320 ~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
..+...+|.++..+|++.+|.....+.++...+-.
T Consensus 484 ~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 484 LILERAQAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 55888999999999999999999999988774433
|
|
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.3e-10 Score=119.66 Aligned_cols=264 Identities=13% Similarity=0.025 Sum_probs=154.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..+...|+...|...+.+|++.+|++.+ ++..--.+.+...+++.|..++.++... .....+|+.-+.
T Consensus 591 ake~w~agdv~~ar~il~~af~~~pnsee----iwlaavKle~en~e~eraR~llakar~~-------sgTeRv~mKs~~ 659 (913)
T KOG0495|consen 591 AKEKWKAGDVPAARVILDQAFEANPNSEE----IWLAAVKLEFENDELERARDLLAKARSI-------SGTERVWMKSAN 659 (913)
T ss_pred HHHHHhcCCcHHHHHHHHHHHHhCCCcHH----HHHHHHHHhhccccHHHHHHHHHHHhcc-------CCcchhhHHHhH
Confidence 44455556666666666666666665433 4444445555566666666666665543 233456666666
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
....+++.++|+..++++++.++ .....|..+|.++..+++ .+.|...|...++
T Consensus 660 ~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~~~~--------------------ie~aR~aY~~G~k 713 (913)
T KOG0495|consen 660 LERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQMEN--------------------IEMAREAYLQGTK 713 (913)
T ss_pred HHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHHHHH--------------------HHHHHHHHHhccc
Confidence 66677777777777777777666 555667777777777777 6777766666655
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
.+ +.....|..++.+-...|+.-.|...++++.--.++... .|.....+-+..|+.+.|...+.+|++
T Consensus 714 ~c------P~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~------lwle~Ir~ElR~gn~~~a~~lmakALQ 781 (913)
T KOG0495|consen 714 KC------PNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNAL------LWLESIRMELRAGNKEQAELLMAKALQ 781 (913)
T ss_pred cC------CCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcch------hHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 53 333446666666666677777777777666554443332 445555566667777777777777776
Q ss_pred HHHHcCCcHH------------------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHH
Q psy10738 269 LAQDLGDRAV------------------------EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324 (609)
Q Consensus 269 ~~~~~~~~~~------------------------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 324 (609)
-++..+-.+. ...++..+|..+....++++|.++|.+++.+.+++|| +|.
T Consensus 782 ecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~GD------~wa 855 (913)
T KOG0495|consen 782 ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNGD------AWA 855 (913)
T ss_pred hCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccch------HHH
Confidence 6554432111 1233444555555555555555555555555555444 444
Q ss_pred HHHHHHHHcCChHHHHHHHHHHH
Q psy10738 325 SLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 325 ~La~~~~~~g~~~~A~~~~~~al 347 (609)
.+-..+...|.-++-.+.+.+..
T Consensus 856 ~fykfel~hG~eed~kev~~~c~ 878 (913)
T KOG0495|consen 856 WFYKFELRHGTEEDQKEVLKKCE 878 (913)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHh
Confidence 44445555555544444444443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.37 E-value=9.1e-11 Score=117.61 Aligned_cols=207 Identities=10% Similarity=0.025 Sum_probs=171.8
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
+...+.+++|+..+.++|+++|++.. +|...|.++..+| ++++++.++.+++.. .+....++...+.++
T Consensus 47 l~~~e~serAL~lt~~aI~lnP~~yt----aW~~R~~iL~~L~~~l~eeL~~~~~~i~~------npknyqaW~~R~~~l 116 (320)
T PLN02789 47 YASDERSPRALDLTADVIRLNPGNYT----VWHFRRLCLEALDADLEEELDFAEDVAED------NPKNYQIWHHRRWLA 116 (320)
T ss_pred HHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHcchhHHHHHHHHHHHHHH------CCcchHHhHHHHHHH
Confidence 56678999999999999999999854 8899999999998 689999999999998 778888999999999
Q ss_pred HHcCCH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 111 KVMGKY--DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 111 ~~~g~~--~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
...|+. ++++.++.+++++.+ ....++...|.++...|+ ++++++++.++++
T Consensus 117 ~~l~~~~~~~el~~~~kal~~dp------kNy~AW~~R~w~l~~l~~--------------------~~eeL~~~~~~I~ 170 (320)
T PLN02789 117 EKLGPDAANKELEFTRKILSLDA------KNYHAWSHRQWVLRTLGG--------------------WEDELEYCHQLLE 170 (320)
T ss_pred HHcCchhhHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHH
Confidence 999874 788999999998876 667799999999999999 9999999999998
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCCHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLL---GNF----KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF----LGEYQ 257 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~ 257 (609)
. .+....++++.+.+.... |.+ ++++.+..+++.+.+.+.. +|..++.++.. +++..
T Consensus 171 ~------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~S------aW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 171 E------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNES------PWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred H------CCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcC------HHHHHHHHHhcCCcccccch
Confidence 7 344466888888887765 333 5788999999999888777 88888888877 45667
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
+|+..+.+++...+. ...++..|+.+|..
T Consensus 239 ~~~~~~~~~~~~~~~------s~~al~~l~d~~~~ 267 (320)
T PLN02789 239 EVSSVCLEVLSKDSN------HVFALSDLLDLLCE 267 (320)
T ss_pred hHHHHHHHhhcccCC------cHHHHHHHHHHHHh
Confidence 788888877663222 25677778888875
|
|
| >KOG4162|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.2e-10 Score=120.46 Aligned_cols=290 Identities=17% Similarity=0.096 Sum_probs=209.0
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~ 117 (609)
..+++..+++|++.+|.|+. +.++++.-|..+++.+.|+.+.++++++. ....+.+|..++.++...+++.
T Consensus 460 h~kslqale~av~~d~~dp~----~if~lalq~A~~R~l~sAl~~~~eaL~l~-----~~~~~~~whLLALvlSa~kr~~ 530 (799)
T KOG4162|consen 460 HKKSLQALEEAVQFDPTDPL----VIFYLALQYAEQRQLTSALDYAREALALN-----RGDSAKAWHLLALVLSAQKRLK 530 (799)
T ss_pred HHHHHHHHHHHHhcCCCCch----HHHHHHHHHHHHHhHHHHHHHHHHHHHhc-----CCccHHHHHHHHHHHhhhhhhH
Confidence 56899999999999999975 78899999999999999999999999982 3345789999999999999999
Q ss_pred HHHHHHHHHHHHHHHc--------------CCcHHHHHHHHHHHHHHH------H---ccccccc-CCCCCCCCCchHhH
Q psy10738 118 EAMVCCKRHLEISRQL--------------NDKLSEGRALYNLGNVYH------A---KGKAIGK-VGQQDPGEYPEEVK 173 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~--------------~d~~~~~~~~~~lg~~~~------~---~g~~~~~-~~~~~~~~~~~~~~ 173 (609)
+|+....-+++-.+.. ++..........+-.++. . .|...+. .+-.-..+-+.++.
T Consensus 531 ~Al~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~ 610 (799)
T KOG4162|consen 531 EALDVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAI 610 (799)
T ss_pred HHHHHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccc
Confidence 9999999998876641 222211111111111111 0 1110000 00011111233333
Q ss_pred HhHHHHHHHHHHHHHHHH------Hh-----CC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMK------EI-----ND--TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~------~~-----~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
+.+..+......-.+.+. .. ++ .......|...+..+...++.++|..++.++-.+.+.. +
T Consensus 611 s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~------~ 684 (799)
T KOG4162|consen 611 STSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPLS------A 684 (799)
T ss_pred hhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchhh------H
Confidence 333333333221111100 00 01 11224567778889999999999999999998876443 4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH--HHHHHHHHHHHhcchhh
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID--YHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~ 318 (609)
..|+..|.++...|++++|.+.|..|+.+.|.. ..+...+|.++...|+..-|.. .+..++++.+.
T Consensus 685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~------ 752 (799)
T KOG4162|consen 685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------VPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL------ 752 (799)
T ss_pred HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC------
Confidence 589999999999999999999999999998874 6788899999999999888888 99999988765
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
...+|+.+|.++.++|+.++|.++|..|+++.....
T Consensus 753 n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 753 NHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 455999999999999999999999999999876554
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=4.9e-11 Score=134.62 Aligned_cols=285 Identities=11% Similarity=0.001 Sum_probs=169.5
Q ss_pred hhhhhhHhhhcCCCcchhHHHHH---------HHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLEL---------ALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAYFY 72 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l---------~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~~~ 72 (609)
++.|...|.+.|+.++|...+.. -.....|.+.|++++|+.+|++..+.+-. + ...|..+..++..
T Consensus 262 ~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd----~~t~~~ll~a~~~ 337 (697)
T PLN03081 262 SCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSID----QFTFSIMIRIFSR 337 (697)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHh
Confidence 34555666666666666555542 12245566666666666666666553211 1 2245556666666
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|++++|.+.+..+++. + ......++..+...|.+.|++++|...|++..+ ....+|+.+...|..
T Consensus 338 ~g~~~~a~~i~~~m~~~----g-~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~---------~d~~t~n~lI~~y~~ 403 (697)
T PLN03081 338 LALLEHAKQAHAGLIRT----G-FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR---------KNLISWNALIAGYGN 403 (697)
T ss_pred ccchHHHHHHHHHHHHh----C-CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHH
Confidence 66666666666655543 1 122334556666667777777777776665432 123456677777777
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.|+ .++|++.|++.... +-.+. ..++..+...+...|..++|..+|+...+...-
T Consensus 404 ~G~--------------------~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~ 458 (697)
T PLN03081 404 HGR--------------------GTKAVEMFERMIAE----GVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRI 458 (697)
T ss_pred cCC--------------------HHHHHHHHHHHHHh----CCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCC
Confidence 777 77777777765432 21221 334666666677777777777777765542111
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..+ ...|..+..+|.+.|++++|.+.+++. ... ....+|..+...+...|+++.|...+++.+.+.+.
T Consensus 459 ~p~----~~~y~~li~~l~r~G~~~eA~~~~~~~-------~~~-p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~ 526 (697)
T PLN03081 459 KPR----AMHYACMIELLGREGLLDEAYAMIRRA-------PFK-PTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPE 526 (697)
T ss_pred CCC----ccchHhHHHHHHhcCCHHHHHHHHHHC-------CCC-CCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCC
Confidence 111 125666777777777777777766542 110 11345677777777788888887777766544332
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
....|..++.+|...|++++|.+.+++..+
T Consensus 527 ------~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~ 556 (697)
T PLN03081 527 ------KLNNYVVLLNLYNSSGRQAEAAKVVETLKR 556 (697)
T ss_pred ------CCcchHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 233677788888888888888888776554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.36 E-value=5.6e-11 Score=115.52 Aligned_cols=195 Identities=15% Similarity=0.055 Sum_probs=141.7
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
....-.++..|..++..|++++|+..|++++...|.++. ...+++.+|.++...|++++|+..++++++..+. .+.
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~---~~~ 105 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY-AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPN---HPD 105 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCc
Confidence 344456777899999999999999999999999997753 3457899999999999999999999999987432 334
Q ss_pred HHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch
Q psy10738 99 EAKSSGNLGNTLKVM--------GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~--------g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 170 (609)
...+++.+|.++... |++++|+..+++++...+... ....++..++..+..
T Consensus 106 ~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~---~~~~a~~~~~~~~~~------------------ 164 (235)
T TIGR03302 106 ADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSE---YAPDAKKRMDYLRNR------------------ 164 (235)
T ss_pred hHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCCh---hHHHHHHHHHHHHHH------------------
Confidence 456789999999876 889999999999988766321 111122211111100
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 171 EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 171 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
.......+|.+|...|++.+|+..+++++...+.. .....++..+|.++
T Consensus 165 ----------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~a~~~l~~~~ 213 (235)
T TIGR03302 165 ----------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDT---PATEEALARLVEAY 213 (235)
T ss_pred ----------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCC---cchHHHHHHHHHHH
Confidence 01123467777888888888888888887765543 22344777888888
Q ss_pred HHhCCHHHHHHHHHHHHHH
Q psy10738 251 IFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 251 ~~~g~~~~A~~~~~~al~~ 269 (609)
...|++++|..+++.....
T Consensus 214 ~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 214 LKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHcCCHHHHHHHHHHHHhh
Confidence 8888888888888776543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.9e-13 Score=77.17 Aligned_cols=24 Identities=42% Similarity=0.857 Sum_probs=15.9
Q ss_pred CchHHHHHHHhhhcchhhhcccCC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHLP 559 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~~ 559 (609)
+|+||+||.|+||+|||||||++.
T Consensus 1 ~e~ffelL~r~Qs~RmdDQR~~l~ 24 (26)
T smart00390 1 DEDLFDLLLRMQSSRMDDQRCELX 24 (26)
T ss_pred CcHHHHHHHHHHhhhHhhhccccc
Confidence 356777777777777777776643
|
GEF specific for Galpha_i proteins |
| >PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.6e-13 Score=76.51 Aligned_cols=21 Identities=38% Similarity=0.832 Sum_probs=10.2
Q ss_pred chHHHHHHHhhhcchhhhccc
Q psy10738 537 DGFLDMLIRCQGARLEDQRSH 557 (609)
Q Consensus 537 ~~~~~~~~~~q~~r~~~qr~~ 557 (609)
|+||+||+++||+|||||||+
T Consensus 2 e~f~~li~~~Q~~RmddQR~~ 22 (23)
T PF02188_consen 2 EDFFDLIARVQSSRMDDQRCS 22 (23)
T ss_dssp HHHHHHHHCCCCCCGCSSSSS
T ss_pred hHHHHHHHHHHhcchhhhccC
Confidence 444444444444444444443
|
The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D. |
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.5e-10 Score=132.02 Aligned_cols=254 Identities=13% Similarity=0.012 Sum_probs=156.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH-
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG- 140 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~- 140 (609)
++..+...|.+.|++++|.+.|++..+ .....|..+...|...|++++|+..|++.+.-. ..+.....
T Consensus 426 ~~n~Li~~y~k~g~~~~A~~vf~~m~~---------~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~--~pd~~t~~~ 494 (857)
T PLN03077 426 VANALIEMYSKCKCIDKALEVFHNIPE---------KDVISWTSIIAGLRLNNRCFEALIFFRQMLLTL--KPNSVTLIA 494 (857)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhCCC---------CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCC--CCCHhHHHH
Confidence 455566667777777777776665321 123456777777778888888888888765310 01111000
Q ss_pred ------------------------------HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 141 ------------------------------RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 141 ------------------------------~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
..+..+-..|...|+ +++|...|+..
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~--------------------~~~A~~~f~~~---- 550 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGR--------------------MNYAWNQFNSH---- 550 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCC--------------------HHHHHHHHHhc----
Confidence 011223345555565 66666555442
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 270 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 270 (609)
.....+|+.+...|...|+.++|+..|++..+.--. ++ ..++..+-..+...|.+++|..+|+......
T Consensus 551 ------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~-Pd----~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~ 619 (857)
T PLN03077 551 ------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVN-PD----EVTFISLLCACSRSGMVTQGLEYFHSMEEKY 619 (857)
T ss_pred ------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----cccHHHHHHHHhhcChHHHHHHHHHHHHHHh
Confidence 112346777888888888888888888876542111 11 1245555667778888888888887765332
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.-.. ....|..+..++.+.|++++|.+.+++.- + . ....+|..|-..+...|+.+.|....++.+++.
T Consensus 620 gi~P----~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~------~-pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~ 687 (857)
T PLN03077 620 SITP----NLKHYACVVDLLGRAGKLTEAYNFINKMP-I------T-PDPAVWGALLNACRIHRHVELGELAAQHIFELD 687 (857)
T ss_pred CCCC----chHHHHHHHHHHHhCCCHHHHHHHHHHCC-C------C-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhC
Confidence 1111 13567778888888888888888877531 1 1 113456666666777788888877777776653
Q ss_pred HHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 351 KQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 351 ~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
+.....+..|+.+|...|+++++
T Consensus 688 ------p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 688 ------PNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred ------CCCcchHHHHHHHHHHCCChHHH
Confidence 45566788888899888886654
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-09 Score=112.33 Aligned_cols=285 Identities=14% Similarity=0.119 Sum_probs=174.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+++.|..+...|+-++|..+...++..++..+- +|..+|.++....+|++|+++|+.|+.+ .+....++
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~v----CwHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qil 112 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHV----CWHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQIL 112 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhccCcccch----hHHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHH
Confidence 3455577777777777777777777776665533 6777777777777777777777777777 66667777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..++.....+|+++-....-.+.+++.+ ..-..|...+..++..|+ +..|....
T Consensus 113 rDlslLQ~QmRd~~~~~~tr~~LLql~~------~~ra~w~~~Avs~~L~g~--------------------y~~A~~il 166 (700)
T KOG1156|consen 113 RDLSLLQIQMRDYEGYLETRNQLLQLRP------SQRASWIGFAVAQHLLGE--------------------YKMALEIL 166 (700)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhh------hhHHHHHHHHHHHHHHHH--------------------HHHHHHHH
Confidence 7777777777777777776666666655 444456666777777776 44444443
Q ss_pred HHHHHHHH-----------------------------------HhC-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 184 EQNLALMK-----------------------------------EIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 184 ~~al~~~~-----------------------------------~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
+....... ... ............|.++..+|++++|...|...+
T Consensus 167 ~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll 246 (700)
T KOG1156|consen 167 EEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLL 246 (700)
T ss_pred HHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHH
Confidence 33332221 110 001112233445777888888888888888877
Q ss_pred HHHHHhCChHHH-HHHHH---HHH----HHHHHh-CC-------------------HHHHH-H-----------------
Q psy10738 228 KIAREFGDKAAE-RRANS---NLG----NSHIFL-GE-------------------YQAAS-E----------------- 261 (609)
Q Consensus 228 ~~~~~~~~~~~~-~~~~~---~la----~~~~~~-g~-------------------~~~A~-~----------------- 261 (609)
...+++-+-... ..++. ..+ .+|... .+ +.... .
T Consensus 247 ~rnPdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl 326 (700)
T KOG1156|consen 247 ERNPDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDL 326 (700)
T ss_pred hhCchhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhh
Confidence 766654332111 11110 000 011100 00 00000 0
Q ss_pred -----------HHHHHHHHHH-Hc--------------CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 262 -----------HYKRTLVLAQ-DL--------------GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 262 -----------~~~~al~~~~-~~--------------~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
.+++.+.... .. ..+....+.++.++..+...|+++.|..+++.|+...+.
T Consensus 327 ~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPT--- 403 (700)
T KOG1156|consen 327 RSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPT--- 403 (700)
T ss_pred HHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCch---
Confidence 1111111110 00 022345667788888999999999999999988865544
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 316 RVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 316 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
..+.+...|+++...|+.++|..++.++.++.
T Consensus 404 ---liEly~~KaRI~kH~G~l~eAa~~l~ea~elD 435 (700)
T KOG1156|consen 404 ---LIELYLVKARIFKHAGLLDEAAAWLDEAQELD 435 (700)
T ss_pred ---HHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc
Confidence 66788889999999999999999998887764
|
|
| >KOG0624|consensus | Back alignment and domain information |
|---|
Probab=99.32 E-value=1.7e-10 Score=110.23 Aligned_cols=266 Identities=15% Similarity=0.067 Sum_probs=192.4
Q ss_pred hhhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhH-----------HH
Q psy10738 4 GNISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRT-----------LS 60 (609)
Q Consensus 4 ~~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~a 60 (609)
+.-+.+|...|...-|+.-+..+ .+|.++.++|.+++|+.-|..+|+.+|.+... ..
T Consensus 76 frRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~ 155 (504)
T KOG0624|consen 76 FRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEH 155 (504)
T ss_pred HHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHH
Confidence 33455566666665555444333 34888899999999999999999887743210 11
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
..+......++..|++..|+++..+.+++ .+..+..+...+.+|...|+...|+.-+..+-++.. ...
T Consensus 156 ~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~------DnT 223 (504)
T KOG0624|consen 156 WVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ------DNT 223 (504)
T ss_pred HHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc------cch
Confidence 22333444556678899999999998888 788888889999999999999999998888777765 456
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH---------HHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL---------GNTYY 211 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l---------g~~~~ 211 (609)
..++.++.+++..|+ .+.++....+++++-+... .....|-.+ +.-..
T Consensus 224 e~~ykis~L~Y~vgd--------------------~~~sL~~iRECLKldpdHK---~Cf~~YKklkKv~K~les~e~~i 280 (504)
T KOG0624|consen 224 EGHYKISQLLYTVGD--------------------AENSLKEIRECLKLDPDHK---LCFPFYKKLKKVVKSLESAEQAI 280 (504)
T ss_pred HHHHHHHHHHHhhhh--------------------HHHHHHHHHHHHccCcchh---hHHHHHHHHHHHHHHHHHHHHHH
Confidence 688899999999999 8888888888877633221 111111111 23344
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 291 (609)
..++|.++++..++.++..+.... ......-.+..|+..-|++.+|+..+.+++.+.+. .+.++...|.+|.
T Consensus 281 e~~~~t~cle~ge~vlk~ep~~~~--ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~------dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 281 EEKHWTECLEAGEKVLKNEPEETM--IRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPD------DVQVLCDRAEAYL 352 (504)
T ss_pred hhhhHHHHHHHHHHHHhcCCcccc--eeeeeeheeeecccccCCHHHHHHHHHHHHhcCch------HHHHHHHHHHHHh
Confidence 567777777777777665444221 12234556778889999999999999999998876 3889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~ 312 (609)
....|+.|+.-|++|.+..+.
T Consensus 353 ~dE~YD~AI~dye~A~e~n~s 373 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALELNES 373 (504)
T ss_pred hhHHHHHHHHHHHHHHhcCcc
Confidence 999999999999999987554
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=99.30 E-value=1.2e-10 Score=113.21 Aligned_cols=194 Identities=14% Similarity=0.054 Sum_probs=146.8
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
..+..++.+|..++..|++++|+..+++++...+ +.+....+++.+|.++...|++++|+..++++++..+...
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~--- 104 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYP---FSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP--- 104 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---
Confidence 3466899999999999999999999999887732 2344557899999999999999999999999998877433
Q ss_pred HHHHHHHHHHHHHHHc--------ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAK--------GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~--------g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
....+++.+|.++... |+ +++|+..+++++...+. ......++..++..
T Consensus 105 ~~~~a~~~~g~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~~p~---~~~~~~a~~~~~~~ 161 (235)
T TIGR03302 105 DADYAYYLRGLSNYNQIDRVDRDQTA--------------------AREAFEAFQELIRRYPN---SEYAPDAKKRMDYL 161 (235)
T ss_pred chHHHHHHHHHHHHHhcccccCCHHH--------------------HHHHHHHHHHHHHHCCC---ChhHHHHHHHHHHH
Confidence 3345788999999876 55 89999999998876332 22222233333222
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 289 (609)
+.. .......+|.+|...|++.+|+..+++++...+....... +++.+|.+
T Consensus 162 ~~~--------------------------~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~---a~~~l~~~ 212 (235)
T TIGR03302 162 RNR--------------------------LAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEE---ALARLVEA 212 (235)
T ss_pred HHH--------------------------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHH---HHHHHHHH
Confidence 110 0113457889999999999999999999998765432222 56789999
Q ss_pred HHHhCCHHHHHHHHHHHHHH
Q psy10738 290 YTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 290 ~~~~g~~~~A~~~~~~al~~ 309 (609)
+...|++++|..+++.....
T Consensus 213 ~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 213 YLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHcCCHHHHHHHHHHHHhh
Confidence 99999999999999987653
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.8e-08 Score=98.48 Aligned_cols=236 Identities=16% Similarity=0.099 Sum_probs=176.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHH--------HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 116 YDEAMVCCKRHLEISRQLNDKLS--------EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 116 ~~~A~~~~~~al~l~~~~~d~~~--------~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+++|.++-++++....+...... ....+-++..+-.-.|+ +.+|++....+.
T Consensus 291 ~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~--------------------~~~al~~i~dm~ 350 (629)
T KOG2300|consen 291 FKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGD--------------------YVEALEEIVDMK 350 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHH
Confidence 55555555555555444432221 12233445556666677 899998888888
Q ss_pred HHHHHhCCh----HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 188 ALMKEINDT----AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 188 ~~~~~~~~~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
+.+.....+ ...+.++..+|......|.|+.|...|..|.+.... ....+.+..++|.+|...|+-+.-.+.+
T Consensus 351 ~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~l 427 (629)
T KOG2300|consen 351 NWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKAL 427 (629)
T ss_pred HHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 887776542 334667888888888899999999999999876544 3345668889999999988755433322
Q ss_pred HHHHHHHHHcC----CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 264 KRTLVLAQDLG----DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 264 ~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
+ .+.+... .....+.+++..|...+.++++.+|..++.+.++++...+.....+..+..|+.+....||..++
T Consensus 428 d---~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 428 D---LIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred H---hcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 2 2222211 22345778888899999999999999999999999866555666777888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 340 LYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 340 ~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
.....-++++++++.|.+........+-+++.+.|+..
T Consensus 505 ~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~ 542 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKG 542 (629)
T ss_pred HhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcch
Confidence 99999999999999999999999999999999999843
|
|
| >PF02188 GoLoco: GoLoco motif; InterPro: IPR003109 In heterotrimeric G-protein signalling, cell surface receptors (GPCRs) are coupled to membrane-associated heterotrimers comprising a GTP-hydrolysing subunit G-alpha and a G-beta/G-gamma dimer | Back alignment and domain information |
|---|
Probab=99.30 E-value=5.6e-13 Score=74.33 Aligned_cols=23 Identities=65% Similarity=1.093 Sum_probs=20.6
Q ss_pred chhHHHHHHHhhccccchhcccC
Q psy10738 567 DEDFFSLITRLQSGRMEDQRATV 589 (609)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~ 589 (609)
+|+||+||+|+|++||||||++|
T Consensus 1 ~e~f~~li~~~Q~~RmddQR~~l 23 (23)
T PF02188_consen 1 DEDFFDLIARVQSSRMDDQRCSL 23 (23)
T ss_dssp -HHHHHHHHCCCCCCGCSSSSS-
T ss_pred ChHHHHHHHHHHhcchhhhccCC
Confidence 68999999999999999999975
|
The inactive form contains the alpha subunit bound to GDP and complexes with the beta and gamma subunit. When the ligand is associated to the receptor, GDP is displaced from G-alpha and GTP is bound. GTP/G-alpha complex dissociates from the trimer and associates to an effector until the intrinsic GTPase activity of G-alpha returns the protein to GDP bound form. Reassociation of GDP bound G-alpha with G-beta/G-gamma dimer terminates the signal. Several mechanisms regulate the signal output at different stage of the G-protein cascade. Two classes of intracellular proteins act as inhibitors of G protein activation: GTPase activating proteins (GAPs), which enhance GTP hydrolysis (see PDOC50132 from PROSITEDOC), and guanine dissociation inhibitors (GDIs), which inhibit GDP dissociation. The GoLoco or G-protein regulatory (GPR) motif found in various G-protein regulators [, ] acts as a GDI on G-alpha(i) [, ]. The crystal structure of the GoLoco motif in complex with G-alpha(i) has been solved []. It consists of three small alpha helices. The highly conserved Asp-Gln-Arg triad within the GoLoco motif participates directly in GDP binding by extending the arginine side chain into the nucleotide binding pocket, highly reminiscent of the catalytic arginine finger employed in GTPase-activating protein (see PDOC50238 from PROSITEDOC). This addition of an arginine in the binding pocket affects the interaction of GDP with G-alpha and therefore is certainly important for the GoLoco GDI activity []. Some proteins known to contain a GoLoco motif are listed below: Mammalian regulators of G-protein signalling 12 and 14 (RGS12 and RGS14), multifaceted signal transduction regulators. Loco, the drosophila RGS12 homologue. Mammalian Purkinje-cell protein-2 (Pcp2). It may function as a cell-type specific modulator for G protein-mediated cell signalling. It is uniquely expressed in cerebellar Purkinje cells and in retinal bipolar neurons. Eukaryotic Rap1GAP. A GTPase activator for the nuclear ras-related regulatory protein RAP-1A. Drosophila protein Rapsynoid (also known as Partner of Inscuteable, Pins) and its mammalian homologues AGS3 and LGN. They form a G-protein regulator family that also contains TPR repeats. ; GO: 0005096 GTPase activator activity, 0007165 signal transduction; PDB: 1KJY_D 3ONW_D 2XNS_D 3QI2_C 2OM2_D. |
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.3e-10 Score=112.76 Aligned_cols=217 Identities=12% Similarity=0.018 Sum_probs=171.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
++..+-.++...+.+++|+..+.+++.+ .|....++...|.++..+| ++++++.++.+++...+ ...
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~l------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------kny 106 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRL------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------KNY 106 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------cch
Confidence 3434444455667889999999999999 8888999999999999999 68999999999998766 555
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
.++++.+.++...|+. .+++++.++.+++++ .+....++.+.|.++...|++++|+
T Consensus 107 qaW~~R~~~l~~l~~~------------------~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL 162 (320)
T PLN02789 107 QIWHHRRWLAEKLGPD------------------AANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDEL 162 (320)
T ss_pred HHhHHHHHHHHHcCch------------------hhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHH
Confidence 6789999998888860 036788888888877 5566789999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---CCH----HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFL---GEY----QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL- 292 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~---g~~----~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~- 292 (609)
+++.++++..+.... +|+..+.+.... |.+ ++++.+..+++.+.+.. ..++..++.++..
T Consensus 163 ~~~~~~I~~d~~N~s------AW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N------~SaW~Yl~~ll~~~ 230 (320)
T PLN02789 163 EYCHQLLEEDVRNNS------AWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRN------ESPWRYLRGLFKDD 230 (320)
T ss_pred HHHHHHHHHCCCchh------HHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCC------cCHHHHHHHHHhcC
Confidence 999999998776655 888888877665 333 57888888999988765 4577778888877
Q ss_pred ---hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q psy10738 293 ---LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA 332 (609)
Q Consensus 293 ---~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~ 332 (609)
+++..+|+..+.+++... .....++..|+.+|..
T Consensus 231 ~~~l~~~~~~~~~~~~~~~~~------~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 231 KEALVSDPEVSSVCLEVLSKD------SNHVFALSDLLDLLCE 267 (320)
T ss_pred CcccccchhHHHHHHHhhccc------CCcHHHHHHHHHHHHh
Confidence 456677888888766532 2234577788888875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.8e-09 Score=113.04 Aligned_cols=301 Identities=11% Similarity=0.017 Sum_probs=185.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.++.++...|++++|++++++....-.+. ..++-..|.++..+|++++|...|...+.. .|.....+..+
T Consensus 9 Y~~~il~e~g~~~~AL~~L~~~~~~I~Dk----~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r------NPdn~~Yy~~L 78 (517)
T PF12569_consen 9 YKNSILEEAGDYEEALEHLEKNEKQILDK----LAVLEKRAELLLKLGRKEEAEKIYRELIDR------NPDNYDYYRGL 78 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhhhhCCCH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHH
Confidence 34677778888888888887765554443 346677788888888888888888888777 66666666666
Q ss_pred HHHHHHcC-----CHHHHHHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 107 GNTLKVMG-----KYDEAMVCCKRHLEISRQLNDKLS------EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 107 g~~~~~~g-----~~~~A~~~~~~al~l~~~~~d~~~------~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
..+..... ..+.-...|.+.....+...-+.. ........+..|...+-. .-...+....+..
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~------KgvPslF~~lk~L 152 (517)
T PF12569_consen 79 EEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLR------KGVPSLFSNLKPL 152 (517)
T ss_pred HHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHh------cCCchHHHHHHHH
Confidence 66653332 344455555554443332111100 011112222222221110 0001111111111
Q ss_pred HH---HHHHHHHHHHHHHHHh--------------CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 176 LQ---EAIKYYEQNLALMKEI--------------NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 176 ~~---~A~~~~~~al~~~~~~--------------~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
|. ++.-...-+..+.... ..+....++++.++..|...|++++|+++++++++..+...+
T Consensus 153 y~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e--- 229 (517)
T PF12569_consen 153 YKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE--- 229 (517)
T ss_pred HcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH---
Confidence 11 1111111111111111 123445789999999999999999999999999998666544
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-Hhcchh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDRV 317 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~ 317 (609)
.|...|.++-..|++.+|..+++.|-.+...- -.+....+..+++.|+.++|.+.+.....-.. ...+-.
T Consensus 230 ---ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~~D------RyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~ 300 (517)
T PF12569_consen 230 ---LYMTKARILKHAGDLKEAAEAMDEARELDLAD------RYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLN 300 (517)
T ss_pred ---HHHHHHHHHHHCCCHHHHHHHHHHHHhCChhh------HHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHH
Confidence 99999999999999999999999988776542 33455667888899999999987765432211 111111
Q ss_pred h--HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 318 G--EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 318 ~--~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
. ........|.+|.+.|++..|+..|.....++..+.+
T Consensus 301 ~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~ 340 (517)
T PF12569_consen 301 DMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEE 340 (517)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc
Confidence 1 1223345699999999999999999998888877643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG0495|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=2.5e-09 Score=110.34 Aligned_cols=293 Identities=11% Similarity=-0.051 Sum_probs=190.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..+.+.+.++-|+..|..+|+..|.+.. +|...+..-..-|..++-..++++++.. .+..-..|...+.
T Consensus 523 a~~~~k~~~~~carAVya~alqvfp~k~s----lWlra~~~ek~hgt~Esl~Allqkav~~------~pkae~lwlM~ak 592 (913)
T KOG0495|consen 523 AQSCEKRPAIECARAVYAHALQVFPCKKS----LWLRAAMFEKSHGTRESLEALLQKAVEQ------CPKAEILWLMYAK 592 (913)
T ss_pred HHHHHhcchHHHHHHHHHHHHhhccchhH----HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCcchhHHHHHHH
Confidence 55666666666666666666666665432 3444444444445555555555555554 2222233333444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCC---------------------------cHHHHHHHHHHHHHHHHcccccccCC
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLND---------------------------KLSEGRALYNLGNVYHAKGKAIGKVG 161 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d---------------------------~~~~~~~~~~lg~~~~~~g~~~~~~~ 161 (609)
.++..|+...|...+.++++..+...+ .....++++.-+.+...+++
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~------ 666 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN------ 666 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh------
Confidence 444445555555554444443321100 01233455555666666666
Q ss_pred CCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
.++|+.+++++++.+ +.....|..+|.++..+++.+.|...|...++.++....
T Consensus 667 --------------~eeA~rllEe~lk~f------p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ip------ 720 (913)
T KOG0495|consen 667 --------------VEEALRLLEEALKSF------PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIP------ 720 (913)
T ss_pred --------------HHHHHHHHHHHHHhC------CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCch------
Confidence 788888888887763 445567888888888888888888888888887776655
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh----
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV---- 317 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~---- 317 (609)
.|..++.+-...|+...|...++++.--.++. ...|...-..-...|+.+.|.....+|++-++..+--+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkNPk~------~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI 794 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKNPKN------ALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAI 794 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc------chhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHH
Confidence 77778888888888888888888876555442 44566666777889999999999999988776654311
Q ss_pred --------------------hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 318 --------------------GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 318 --------------------~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
....++..+|..+....++++|..+|.+|+.+....| .++..+-..+...|.
T Consensus 795 ~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~G------D~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 795 WLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDNG------DAWAWFYKFELRHGT 866 (913)
T ss_pred HhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCccc------hHHHHHHHHHHHhCC
Confidence 1224667889999999999999999999999875554 444455555556664
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-08 Score=107.00 Aligned_cols=322 Identities=16% Similarity=0.065 Sum_probs=211.7
Q ss_pred hhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-
Q psy10738 7 SSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL- 73 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~- 73 (609)
..++...|++++|+..+.-. .+|..+.+.|++++|...|...|+.+|++.. .|..+..+....
T Consensus 11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~----Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYD----YYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHhhhc
Confidence 56778889999888776532 3499999999999999999999999999865 334444443222
Q ss_pred ----CCHHHHHHHHHHHHHHHHHcC------------C--------------hhhHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 74 ----GDYQKAMQYHKQDLTLARNME------------D--------------KLGEAKSSGNLGNTLKVMGKYDEAMVCC 123 (609)
Q Consensus 74 ----g~~~~A~~~~~~al~~~~~~~------------d--------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~ 123 (609)
.+.+.-...|.+.....+... + ..+.+....++-..|. +..++...-
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~---d~~K~~~i~ 163 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYK---DPEKAAIIE 163 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHc---ChhHHHHHH
Confidence 234555555555433322110 0 0011112222222222 122221111
Q ss_pred HHHHHHHHHc--------------CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 124 KRHLEISRQL--------------NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 124 ~~al~l~~~~--------------~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
.-+..+.... ..+....++++.+|..|...|+ +++|+.+.+++++.
T Consensus 164 ~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~--------------------~~~Al~~Id~aI~h 223 (517)
T PF12569_consen 164 SLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGD--------------------YEKALEYIDKAIEH 223 (517)
T ss_pred HHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhc
Confidence 1111222111 1233456788999999999999 99999999999987
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.|.....|...|.++-..|++.+|..+++.|..+...... +....+..+++.|+.++|...+..-..-
T Consensus 224 ------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRy------iNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 224 ------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRY------INSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred ------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHH------HHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 6777889999999999999999999999999887554333 5566788889999999998877543322
Q ss_pred HH-HcCCcH--HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 270 AQ-DLGDRA--VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 270 ~~-~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
.. ...+.. ...+.....|.+|...|++..|++.|....+++....+.......|. .+.| -+..|-..
T Consensus 292 ~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~~~~DQfDFH~Yc------~RK~----t~r~Y~~~ 361 (517)
T PF12569_consen 292 DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKHFDDFEEDQFDFHSYC------LRKM----TLRAYVDM 361 (517)
T ss_pred CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccHHHHH------Hhhc----cHHHHHHH
Confidence 11 001111 12344456799999999999999999999999888755322222221 1112 13345556
Q ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 347 LEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
+.....+...+...++.....++|..+-+..
T Consensus 362 L~~ed~l~~~~~y~raa~~ai~iYl~l~d~~ 392 (517)
T PF12569_consen 362 LRWEDKLRSHPFYRRAAKGAIRIYLELHDKP 392 (517)
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHHhcCc
Confidence 7777777788888888888888888876643
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >smart00390 GoLoco LGN motif, putative GEFs specific for G-alpha GTPases | Back alignment and domain information |
|---|
Probab=99.23 E-value=3.3e-12 Score=72.88 Aligned_cols=24 Identities=54% Similarity=0.942 Sum_probs=22.2
Q ss_pred chhHHHHHHHhhccccchhcccCC
Q psy10738 567 DEDFFSLITRLQSGRMEDQRATVP 590 (609)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~ 590 (609)
+|+||+||.|+|++|||||||.+.
T Consensus 1 ~e~ffelL~r~Qs~RmdDQR~~l~ 24 (26)
T smart00390 1 DEDLFDLLLRMQSSRMDDQRCELX 24 (26)
T ss_pred CcHHHHHHHHHHhhhHhhhccccc
Confidence 489999999999999999999864
|
GEF specific for Galpha_i proteins |
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.2e-09 Score=117.31 Aligned_cols=194 Identities=12% Similarity=0.106 Sum_probs=136.0
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..||.+|...-|...|..||..+.. +..+....+++.|....-.+-+..|... ....|..+|..|
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~--~k~nW~~rG~yy 572 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFA--CKENWVQRGPYY 572 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHH--HHhhhhhccccc
Confidence 34556666666566666666655443 4556666666666666444433333211 223455578888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...+++..|+..++.++.. .|....+|..+|.+|...|.|..|++.|.++..+.| ....+.+..+.+.
T Consensus 573 Lea~n~h~aV~~fQsALR~------dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP------~s~y~~fk~A~~e 640 (1238)
T KOG1127|consen 573 LEAHNLHGAVCEFQSALRT------DPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRP------LSKYGRFKEAVME 640 (1238)
T ss_pred cCccchhhHHHHHHHHhcC------CchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCc------HhHHHHHHHHHHH
Confidence 8888888888888888888 788888999999999999999999999999888776 5556777888888
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
...|+ |.+|+..+...+...... .-....+.++..++..+...|-+.+|..+++++++.
T Consensus 641 cd~Gk--------------------Ykeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~ 700 (1238)
T KOG1127|consen 641 CDNGK--------------------YKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIES 700 (1238)
T ss_pred HHhhh--------------------HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 88898 889988888776654322 222345667777777777777777787777777665
Q ss_pred H
Q psy10738 230 A 230 (609)
Q Consensus 230 ~ 230 (609)
+
T Consensus 701 f 701 (1238)
T KOG1127|consen 701 F 701 (1238)
T ss_pred H
Confidence 4
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4e-09 Score=122.08 Aligned_cols=257 Identities=12% Similarity=0.016 Sum_probs=182.2
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH----------
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE---------- 99 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~---------- 99 (609)
..|.+.|++++|.++|++..+. + ...|..+...|...|++++|+..|++.+.. -..+....
T Consensus 432 ~~y~k~g~~~~A~~vf~~m~~~---d----~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~--~~pd~~t~~~lL~a~~~~ 502 (857)
T PLN03077 432 EMYSKCKCIDKALEVFHNIPEK---D----VISWTSIIAGLRLNNRCFEALIFFRQMLLT--LKPNSVTLIAALSACARI 502 (857)
T ss_pred HHHHHcCCHHHHHHHHHhCCCC---C----eeeHHHHHHHHHHCCCHHHHHHHHHHHHhC--CCCCHhHHHHHHHHHhhh
Confidence 4566777777777777765331 2 225777888888999999999999988642 00111100
Q ss_pred ---------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 100 ---------------------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 100 ---------------------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
...+..+-..|.+.|++++|...|+.. . ....+|+.+...|...|+
T Consensus 503 g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~------~d~~s~n~lI~~~~~~G~--- 569 (857)
T PLN03077 503 GALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH----E------KDVVSWNILLTGYVAHGK--- 569 (857)
T ss_pred chHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc----C------CChhhHHHHHHHHHHcCC---
Confidence 111223446777888888888877664 1 234578899999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
.++|+..|++..+. +-.+. ..++..+-..+...|.+++|..+|+...+...-.++
T Consensus 570 -----------------~~~A~~lf~~M~~~----g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~--- 624 (857)
T PLN03077 570 -----------------GSMAVELFNRMVES----GVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPN--- 624 (857)
T ss_pred -----------------HHHHHHHHHHHHHc----CCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc---
Confidence 99999999986643 22222 235666667788999999999999987643322222
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh
Q psy10738 239 ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG 318 (609)
Q Consensus 239 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 318 (609)
...|..+..++.+.|++++|.+.+++.- +. . ...+|..|-..+...|+.+.|....++.+++.+.
T Consensus 625 -~~~y~~lv~~l~r~G~~~eA~~~~~~m~-~~---p----d~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~------ 689 (857)
T PLN03077 625 -LKHYACVVDLLGRAGKLTEAYNFINKMP-IT---P----DPAVWGALLNACRIHRHVELGELAAQHIFELDPN------ 689 (857)
T ss_pred -hHHHHHHHHHHHhCCCHHHHHHHHHHCC-CC---C----CHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC------
Confidence 2478889999999999999999987641 11 1 1456666767788899999998888888876544
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
....|..++++|...|++++|....+...+
T Consensus 690 ~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~ 719 (857)
T PLN03077 690 SVGYYILLCNLYADAGKWDEVARVRKTMRE 719 (857)
T ss_pred CcchHHHHHHHHHHCCChHHHHHHHHHHHH
Confidence 344788999999999999999988766544
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.1e-07 Score=94.43 Aligned_cols=338 Identities=14% Similarity=0.072 Sum_probs=206.0
Q ss_pred hhhHhhhcCCCcchhHHHH---------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcc---------------------
Q psy10738 6 ISSSDSQSGGADGGNMCLE---------LALEGERLCKAGDCRAGVAFFQAAIQAGTDD--------------------- 55 (609)
Q Consensus 6 Lg~~~~~~g~~~~a~~~~~---------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~--------------------- 55 (609)
=+.|.++.+..++++.++. +.++|..+|+.|+|++|+..|+..++.+.++
T Consensus 85 KAYc~Yrlnk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~ 164 (652)
T KOG2376|consen 85 KAYCEYRLNKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLL 164 (652)
T ss_pred HHHHHHHcccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHH
Confidence 3678889999999999886 5667999999999999999999986643221
Q ss_pred ------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CC------hhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 56 ------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM---ED------KLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 56 ------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~d------~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
++.--..+++.+.++...|+|.+|++.+++++.++++. +| ......+...++.++..+|+-.+|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 11123567889999999999999999999998887743 11 1234567788999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch-HhHHhHHHH-HHHHHHHHHHHHHhCChHH
Q psy10738 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE-EVKVCLQEA-IKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 121 ~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~-~~~~~~~~A-~~~~~~al~~~~~~~~~~~ 198 (609)
..|...+...+ .|....+.+-+||-.+-....- ++ .....++.- ....+.++..+. ...
T Consensus 245 ~iy~~~i~~~~--~D~~~~Av~~NNLva~~~d~~~-------------~d~~~l~~k~~~~~~l~~~~l~~Ls----~~q 305 (652)
T KOG2376|consen 245 SIYVDIIKRNP--ADEPSLAVAVNNLVALSKDQNY-------------FDGDLLKSKKSQVFKLAEFLLSKLS----KKQ 305 (652)
T ss_pred HHHHHHHHhcC--CCchHHHHHhcchhhhcccccc-------------CchHHHHHHHHHHHHhHHHHHHHHH----HHH
Confidence 99998776433 4544555555555433222111 00 000000000 000000000000 011
Q ss_pred HHHHHHHHHHHHHHcC----------------------------------CHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 199 QGRACGNLGNTYYLLG----------------------------------NFKQAIYYHQERLKIAREFGDKAAERRANS 244 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g----------------------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 244 (609)
...++.|.+.+.+..+ .+.+|++++...-+ +.+.....+..
T Consensus 306 k~~i~~N~~lL~l~tnk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~-----~~p~~s~~v~L 380 (652)
T KOG2376|consen 306 KQAIYRNNALLALFTNKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFAD-----GHPEKSKVVLL 380 (652)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhc-----cCCchhHHHHH
Confidence 1112223332222222 23333333322211 12222334677
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHH
Q psy10738 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRA 322 (609)
Q Consensus 245 ~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~ 322 (609)
.++.+.+..|+++.|++.+...+...... .+......+-..+-..|...++.+.|...+.+|+........ .......
T Consensus 381 ~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~ 460 (652)
T KOG2376|consen 381 LRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSL 460 (652)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhH
Confidence 78899999999999999998554222111 111111222333445677778888888888888887765433 2334556
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
++.++.+....|+-++|...+++.++.. +....++..+.-.|..+
T Consensus 461 ~~~aa~f~lr~G~~~ea~s~leel~k~n------~~d~~~l~~lV~a~~~~ 505 (652)
T KOG2376|consen 461 MREAAEFKLRHGNEEEASSLLEELVKFN------PNDTDLLVQLVTAYARL 505 (652)
T ss_pred HHHHhHHHHhcCchHHHHHHHHHHHHhC------CchHHHHHHHHHHHHhc
Confidence 7778888889999999999999988765 44445555555444433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3e-10 Score=100.77 Aligned_cols=125 Identities=14% Similarity=0.147 Sum_probs=91.0
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~ 121 (609)
..+|+++++++|++ +..+|.++...|++++|+.+|++++.+ .+....++..+|.++...|++++|+.
T Consensus 13 ~~~~~~al~~~p~~-------~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~ 79 (144)
T PRK15359 13 EDILKQLLSVDPET-------VYASGYASWQEGDYSRAVIDFSWLVMA------QPWSWRAHIALAGTWMMLKEYTTAIN 79 (144)
T ss_pred HHHHHHHHHcCHHH-------HHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 45677777777763 345677788888888888888888777 67777788888888888888888888
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201 (609)
Q Consensus 122 ~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 201 (609)
+|.+++.+.+ ..+.+++++|.++...|+ +++|+..|.+++.+ .+....
T Consensus 80 ~y~~Al~l~p------~~~~a~~~lg~~l~~~g~--------------------~~eAi~~~~~Al~~------~p~~~~ 127 (144)
T PRK15359 80 FYGHALMLDA------SHPEPVYQTGVCLKMMGE--------------------PGLAREAFQTAIKM------SYADAS 127 (144)
T ss_pred HHHHHHhcCC------CCcHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh------CCCChH
Confidence 8888887665 456677888888888888 88888888887776 233344
Q ss_pred HHHHHHHHHH
Q psy10738 202 ACGNLGNTYY 211 (609)
Q Consensus 202 ~~~~lg~~~~ 211 (609)
.+.++|.+..
T Consensus 128 ~~~~~~~~~~ 137 (144)
T PRK15359 128 WSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
|
| >KOG1156|consensus | Back alignment and domain information |
|---|
Probab=99.17 E-value=2.5e-08 Score=103.36 Aligned_cols=242 Identities=18% Similarity=0.123 Sum_probs=194.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.++.++.-.+..++|..++...+.+++..|++.+ .+...|..+..+|+-++|..+...++.. +.....+|
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge----slAmkGL~L~~lg~~~ea~~~vr~glr~------d~~S~vCw 78 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE----SLAMKGLTLNCLGKKEEAYELVRLGLRN------DLKSHVCW 78 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch----hHHhccchhhcccchHHHHHHHHHHhcc------CcccchhH
Confidence 4566778889999999999999999999888865 6677899999999999999999999886 67778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++....+|++|++||..|+.+.+ ....++..++.+...+++ |+.....-
T Consensus 79 Hv~gl~~R~dK~Y~eaiKcy~nAl~~~~------dN~qilrDlslLQ~QmRd--------------------~~~~~~tr 132 (700)
T KOG1156|consen 79 HVLGLLQRSDKKYDEAIKCYRNALKIEK------DNLQILRDLSLLQIQMRD--------------------YEGYLETR 132 (700)
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHhcCC------CcHHHHHHHHHHHHHHHh--------------------hhhHHHHH
Confidence 9999999999999999999999999877 667799999999999999 88777766
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH--HHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA--AERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
.+.+++ .+..-..|...+..+...|++..|....+..........+.. ....+......++...|.+++|.+
T Consensus 133 ~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale 206 (700)
T KOG1156|consen 133 NQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALE 206 (700)
T ss_pred HHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHH
Confidence 666665 556667888999999999999999999888777665333322 224455566777888888888877
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
.+..--.-.-+ ........|.++..++++++|...|...+...++.
T Consensus 207 ~L~~~e~~i~D------kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rnPdn 252 (700)
T KOG1156|consen 207 HLLDNEKQIVD------KLAFEETKADLLMKLGQLEEAVKVYRRLLERNPDN 252 (700)
T ss_pred HHHhhhhHHHH------HHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhCchh
Confidence 76543322211 23345567899999999999999999988776653
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=1.5e-08 Score=97.50 Aligned_cols=299 Identities=16% Similarity=0.099 Sum_probs=178.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHH----------HHHHHHcCChhh
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQD----------LTLARNMEDKLG 98 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~~d~~~ 98 (609)
|.+++..|+|++|...|.-+.+.+..+ +.++.+|+.+++.+|.|.+|.....++ ..++.+.+|...
T Consensus 64 a~C~fhLgdY~~Al~~Y~~~~~~~~~~----~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~ 139 (557)
T KOG3785|consen 64 AHCYFHLGDYEEALNVYTFLMNKDDAP----AELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKR 139 (557)
T ss_pred HHHHHhhccHHHHHHHHHHHhccCCCC----cccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHH
Confidence 889999999999999999988744333 457889999999999999998876554 233445555444
Q ss_pred HHHHH----------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCC
Q psy10738 99 EAKSS----------GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEY 168 (609)
Q Consensus 99 ~~~a~----------~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~ 168 (609)
....+ ..++.+++..-.|.+|++.|.+.+.-.+ .....-.++|.+|+.+.-
T Consensus 140 ~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~------ey~alNVy~ALCyyKlDY------------- 200 (557)
T KOG3785|consen 140 ILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNP------EYIALNVYMALCYYKLDY------------- 200 (557)
T ss_pred HHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCh------hhhhhHHHHHHHHHhcch-------------
Confidence 43333 3456666777788888888888776544 444455667777777765
Q ss_pred chHhHHhHHHHHHHHHHHHHHHHHhCChH---------------------------------------------------
Q psy10738 169 PEEVKVCLQEAIKYYEQNLALMKEINDTA--------------------------------------------------- 197 (609)
Q Consensus 169 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~--------------------------------------------------- 197 (609)
|+-+.+.+.--+. +.++.+
T Consensus 201 -------ydvsqevl~vYL~---q~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrng 270 (557)
T KOG3785|consen 201 -------YDVSQEVLKVYLR---QFPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNG 270 (557)
T ss_pred -------hhhHHHHHHHHHH---hCCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCC
Confidence 4444443332222 111111
Q ss_pred ------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 198 ------------AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 198 ------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
....+..||...|..+++..+|+...+.. ... ...-|...|.++...|+--...++++-
T Consensus 271 EgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl-------~Pt--tP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 271 EGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDL-------DPT--TPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred ccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhc-------CCC--ChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 11223344444444444444444333221 000 011233344444444444444444444
Q ss_pred HHHHHHHcCCcHHH---HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 266 TLVLAQDLGDRAVE---AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 266 al~~~~~~~~~~~~---~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
|-+...-.+..... ......+|.+++...++++.+.|+...-..+-... ...+++|+++...|++.+|.+.
T Consensus 342 AqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD------~Fn~N~AQAk~atgny~eaEel 415 (557)
T KOG3785|consen 342 AQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDD------DFNLNLAQAKLATGNYVEAEEL 415 (557)
T ss_pred HHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc------hhhhHHHHHHHHhcChHHHHHH
Confidence 44433333221111 11234566677777788888887776555544322 2678899999999999999887
Q ss_pred HHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 343 ATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 343 ~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
|-+.-. .+......-...||++|...+.+..|.
T Consensus 416 f~~is~-----~~ikn~~~Y~s~LArCyi~nkkP~lAW 448 (557)
T KOG3785|consen 416 FIRISG-----PEIKNKILYKSMLARCYIRNKKPQLAW 448 (557)
T ss_pred HhhhcC-----hhhhhhHHHHHHHHHHHHhcCCchHHH
Confidence 755321 111344556778999999999988764
|
|
| >KOG1127|consensus | Back alignment and domain information |
|---|
Probab=99.14 E-value=8.8e-09 Score=110.94 Aligned_cols=233 Identities=16% Similarity=0.100 Sum_probs=191.9
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
..+...|+..+-+++.+ .+..+.++..||.+|...-+...|..+|.+|.++.. ..+.+.-.++..|..
T Consensus 471 rK~~~~al~ali~alrl------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDa------tdaeaaaa~adtyae 538 (1238)
T KOG1127|consen 471 RKNSALALHALIRALRL------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDA------TDAEAAAASADTYAE 538 (1238)
T ss_pred hhhHHHHHHHHHHHHhc------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc------hhhhhHHHHHHHhhc
Confidence 34577888888888888 888999999999999999999999999999999877 667788888999999
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
..+ ++.|....-.+-+... .......+..+|..|...+++..|+..++.++...+.
T Consensus 539 ~~~--------------------we~a~~I~l~~~qka~----a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPk 594 (1238)
T KOG1127|consen 539 EST--------------------WEEAFEICLRAAQKAP----AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPK 594 (1238)
T ss_pred ccc--------------------HHHHHHHHHHHhhhch----HHHHHhhhhhccccccCccchhhHHHHHHHHhcCCch
Confidence 988 8888877433322211 1222345566999999999999999999999998887
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..+ +|..+|.+|...|.|..|++.|.++..+.+.. ....+..+.+....|+|.+|+..+...+.....
T Consensus 595 D~n------~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s------~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~ 662 (1238)
T KOG1127|consen 595 DYN------LWLGLGEAYPESGRYSHALKVFTKASLLRPLS------KYGRFKEAVMECDNGKYKEALDALGLIIYAFSL 662 (1238)
T ss_pred hHH------HHHHHHHHHHhcCceehHHHhhhhhHhcCcHh------HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 665 99999999999999999999999999887763 556777888999999999999999988776544
Q ss_pred h-cchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 313 L-MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 313 ~-~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
. ....+.+.++...+..+...|=..+|..+++++++.+.-.
T Consensus 663 e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~ 704 (1238)
T KOG1127|consen 663 ERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS 704 (1238)
T ss_pred HHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 2 3355677888888999999999999999999999887543
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=5.4e-09 Score=109.56 Aligned_cols=312 Identities=17% Similarity=0.106 Sum_probs=209.6
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH----HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE----GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAM 80 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~----g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~ 80 (609)
.++..+...|-...|...++.... ..+|...|+..+|..+..+-++ .+.+ +..|..+|.+... -
T Consensus 403 ~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le-k~~d----~~lyc~LGDv~~d-------~ 470 (777)
T KOG1128|consen 403 LLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE-KDPD----PRLYCLLGDVLHD-------P 470 (777)
T ss_pred HHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc-CCCc----chhHHHhhhhccC-------h
Confidence 356666777777777666654333 5678888888899888888888 3434 2355555555444 4
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccC
Q psy10738 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV 160 (609)
Q Consensus 81 ~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~ 160 (609)
.+|+++.++.+. ..+.+...+|......++|.++.++++..+++.+ .....|+.+|.+....++
T Consensus 471 s~yEkawElsn~-----~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~np------lq~~~wf~~G~~ALqlek----- 534 (777)
T KOG1128|consen 471 SLYEKAWELSNY-----ISARAQRSLALLILSNKDFSEADKHLERSLEINP------LQLGTWFGLGCAALQLEK----- 534 (777)
T ss_pred HHHHHHHHHhhh-----hhHHHHHhhccccccchhHHHHHHHHHHHhhcCc------cchhHHHhccHHHHHHhh-----
Confidence 566666666432 3455777888888889999999999999999987 778899999999999999
Q ss_pred CCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 161 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
++.|..+|..++.+ .+..+.+|+|++..|...|+-.+|...+++|++...++..
T Consensus 535 ---------------~q~av~aF~rcvtL------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~----- 588 (777)
T KOG1128|consen 535 ---------------EQAAVKAFHRCVTL------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQ----- 588 (777)
T ss_pred ---------------hHHHHHHHHHHhhc------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCe-----
Confidence 99999999999988 6777889999999999999999999999999987644433
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHhCCHHHHHHHHHH--HHHHHHHhcchh
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLR--HLIIAQQLMDRV 317 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~--al~~~~~~~~~~ 317 (609)
.+-|.-.+....|.+++|+..|.+.+.+.....+.......-....... -..++-..+.....+ .....+....
T Consensus 589 -iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~~~~d~s~de~~~~k~~~kelmg~~~~qv~~-- 665 (777)
T KOG1128|consen 589 -IWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLEGMTDESGDEATGLKGKLKELLGKVLSQVTN-- 665 (777)
T ss_pred -eeechhhhhhhcccHHHHHHHHHHHHHhhhhcccchhhHHHHHHHHhhccccccchhhhhhHHHHHHHHHHHHHHhC--
Confidence 7778888889999999999999999988877654433222222222111 122344444444444 1111222222
Q ss_pred hHHHHHHHHHHHH-----HHcCChHHHHHHHHHHHHHHHHcCCCch-------HHHHHHHHHHHHHHcC
Q psy10738 318 GEGRACWSLGNAH-----AARGNHEKALYFATKHLEISKQLGDPLG-------QVTAQMNVTDLRKALG 374 (609)
Q Consensus 318 ~~~~~~~~La~~~-----~~~g~~~~A~~~~~~al~l~~~~~~~~~-------~~~a~~~la~l~~~~g 374 (609)
....+...|..+ .+.+..++|.....+.........-... ..++...++.++...+
T Consensus 666 -s~~~wrL~a~l~~~~~~ek~~~~eka~~~l~k~~~~~s~~~~w~~d~~~~~~~v~~a~~l~~v~~e~~ 733 (777)
T KOG1128|consen 666 -SPETWRLYALLYGNGSSEKLDENEKAYRALSKAYKCDTGSNVWEKDITLFKEVVQAALGLAHVAIECS 733 (777)
T ss_pred -chhhhHhHhhhccccchhcccccHHHHhhhhhCccccccccCCccchhHHHHHHHHHHHHHHHHHHHh
Confidence 222333333322 2345566777777777666544443332 2334444555544443
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.3e-09 Score=96.64 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=98.9
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...|..+...|++++|+.+|++++..+|.+. .++..+|.++...|++++|+..|.+++.+ .+..+.++++
T Consensus 28 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~y~~Al~l------~p~~~~a~~~ 97 (144)
T PRK15359 28 YASGYASWQEGDYSRAVIDFSWLVMAQPWSW----RAHIALAGTWMMLKEYTTAINFYGHALML------DASHPEPVYQ 97 (144)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHHHHH
Confidence 3458999999999999999999999999885 48899999999999999999999999998 8888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
+|.++...|++++|+..|.+++.+.+ .....+.++|.+....
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p------~~~~~~~~~~~~~~~l 139 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSY------ADASWSEIRQNAQIMV 139 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHH
Confidence 99999999999999999999999877 4445566666655443
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.1e-09 Score=104.02 Aligned_cols=116 Identities=27% Similarity=0.390 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+-.+|..+++.++|.+|+..|.+||++.|.+. ..|.+.+.+|..+|+|+.|++.++.++.+ ++...++|
T Consensus 83 ~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA----VyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp~yskay 152 (304)
T KOG0553|consen 83 SLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA----VYYCNRAAAYSKLGEYEDAVKDCESALSI------DPHYSKAY 152 (304)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc----hHHHHHHHHHHHhcchHHHHHHHHHHHhc------ChHHHHHH
Confidence 344569999999999999999999999999984 48899999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
..||.+|..+|++.+|++.|++++++.+ .......+|..+-...++
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP------~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDP------DNESYKSNLKIAEQKLNE 198 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCC------CcHHHHHHHHHHHHHhcC
Confidence 9999999999999999999999999988 333455566666555555
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.08 E-value=8.2e-09 Score=96.68 Aligned_cols=127 Identities=17% Similarity=0.201 Sum_probs=93.6
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-H
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY-H 151 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~-~ 151 (609)
.++.++++..+++++.. .+....+|..+|.+|...|++++|+..|++++.+.+ ....++..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P------~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRG------ENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Confidence 55667777777777777 677777888888888888888888888888887776 4566777778764 5
Q ss_pred HcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 152 ~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
..|++ .+++|...++++++. .+....++.++|..+...|++++|+.+++++++..+
T Consensus 120 ~~g~~------------------~~~~A~~~l~~al~~------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~ 175 (198)
T PRK10370 120 QAGQH------------------MTPQTREMIDKALAL------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLNS 175 (198)
T ss_pred hcCCC------------------CcHHHHHHHHHHHHh------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 55550 037788888887776 444566788888888888888888888888887766
Q ss_pred HhCC
Q psy10738 232 EFGD 235 (609)
Q Consensus 232 ~~~~ 235 (609)
...+
T Consensus 176 ~~~~ 179 (198)
T PRK10370 176 PRVN 179 (198)
T ss_pred CCcc
Confidence 6444
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.07 E-value=1.1e-08 Score=113.23 Aligned_cols=242 Identities=12% Similarity=-0.007 Sum_probs=173.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-----
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN----- 134 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~----- 134 (609)
..++..|...|...+++++|+..++.+++. .|.....++.+|.++...+++.+|... .++.+.+...
T Consensus 31 ~~a~~~Li~~~~~~~~~deai~i~~~~l~~------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~v 102 (906)
T PRK14720 31 FKELDDLIDAYKSENLTDEAKDICEEHLKE------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIV 102 (906)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHH
Confidence 558899999999999999999999999988 888999999999999999998888766 5655544322
Q ss_pred --------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 135 --------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206 (609)
Q Consensus 135 --------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 206 (609)
+....-.+++.+|.||-.+|+ +++|...|++++++ .+..+.+++++
T Consensus 103 e~~~~~i~~~~~~k~Al~~LA~~Ydk~g~--------------------~~ka~~~yer~L~~------D~~n~~aLNn~ 156 (906)
T PRK14720 103 EHICDKILLYGENKLALRTLAEAYAKLNE--------------------NKKLKGVWERLVKA------DRDNPEIVKKL 156 (906)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHhc------CcccHHHHHHH
Confidence 222334688999999999999 99999999999988 46677899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
|..|... +.++|+.++.+|+...-...........|. ..+...-.+++.=..+.++.+... ........+.-+
T Consensus 157 AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~--k~~~~~~~d~d~f~~i~~ki~~~~----~~~~~~~~~~~l 229 (906)
T PRK14720 157 ATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWS--KLVHYNSDDFDFFLRIERKVLGHR----EFTRLVGLLEDL 229 (906)
T ss_pred HHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHH--HHHhcCcccchHHHHHHHHHHhhh----ccchhHHHHHHH
Confidence 9999999 999999999999886443332222211221 112222222222222222222111 112234556666
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
=..|...++|++++.+++.++++.+. ...+...++.+|. +.|.. ...+++++.+..
T Consensus 230 ~~~y~~~~~~~~~i~iLK~iL~~~~~------n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 230 YEPYKALEDWDEVIYILKKILEHDNK------NNKAREELIRFYK--EKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred HHHHhhhhhhhHHHHHHHHHHhcCCc------chhhHHHHHHHHH--HHccC-cchHHHHHHHhc
Confidence 68899999999999999999988765 2346778888888 45544 677777777764
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.4e-07 Score=85.18 Aligned_cols=241 Identities=13% Similarity=0.096 Sum_probs=185.1
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
+|.+...+....-..|....+..|..-+.+|....+|++|..++.+|.+..+........+.++-..|.....+..+.++
T Consensus 11 ea~e~~a~t~~~wkad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEv 90 (308)
T KOG1585|consen 11 EADEMTALTLTRWKADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEV 90 (308)
T ss_pred HHHHHHHHHhhccCCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 34444444443333344555677888889999999999999999999998888777888899999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 199 (609)
..++++|..++.+.|.+...+.++-.-|.+..... .++|+.+|++++.++...+.....
T Consensus 91 vdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~---------------------Pd~AlqlYqralavve~~dr~~ma 149 (308)
T KOG1585|consen 91 VDLYEKASELYVECGSPDTAAMALEKAAKALENVK---------------------PDDALQLYQRALAVVEEDDRDQMA 149 (308)
T ss_pred HHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCC---------------------HHHHHHHHHHHHHHHhccchHHHH
Confidence 99999999999999988887777777776655443 899999999999999887766677
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
...+...++++.....|.+|-..+.+-..+.............+.....+|+...+|..|...++...++-.-. ....
T Consensus 150 ~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~--~sed 227 (308)
T KOG1585|consen 150 FELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL--KSED 227 (308)
T ss_pred HHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc--ChHH
Confidence 78889999999999999999999988877777655544444566666677778889999999998866553322 1223
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
..++.+|-..| ..|+.+++...+.
T Consensus 228 ~r~lenLL~ay-d~gD~E~~~kvl~ 251 (308)
T KOG1585|consen 228 SRSLENLLTAY-DEGDIEEIKKVLS 251 (308)
T ss_pred HHHHHHHHHHh-ccCCHHHHHHHHc
Confidence 55566665444 5677777655543
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.9e-09 Score=97.67 Aligned_cols=152 Identities=18% Similarity=0.179 Sum_probs=122.2
Q ss_pred hhHhhhcCCCcchhHHHHHHHH-HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 7 SSSDSQSGGADGGNMCLELALE-GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ 85 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~~-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~ 85 (609)
+..|...|+++........... -..+...++.++++..++++++.+|++.. .|..+|.+|...|++++|+..|++
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~L~~~P~~~~----~w~~Lg~~~~~~g~~~~A~~a~~~ 98 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLHQFASQQTPEAQLQALQDKIRANPQNSE----QWALLGEYYLWRNDYDNALLAYRQ 98 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccccccCchhHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 3456667776554333211000 00111357789999999999999999855 899999999999999999999999
Q ss_pred HHHHHHHcCChhhHHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC
Q psy10738 86 DLTLARNMEDKLGEAKSSGNLGNTL-KVMGK--YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 86 al~~~~~~~d~~~~~~a~~~lg~~~-~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
++.+ .+....++..+|.++ ...|+ +++|...++++++..+ ....+++++|..+...|+
T Consensus 99 Al~l------~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP------~~~~al~~LA~~~~~~g~------- 159 (198)
T PRK10370 99 ALQL------RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDA------NEVTALMLLASDAFMQAD------- 159 (198)
T ss_pred HHHh------CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHcCC-------
Confidence 9999 788899999999975 67787 5999999999999887 556799999999999999
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
+++|+.++++++++.....
T Consensus 160 -------------~~~Ai~~~~~aL~l~~~~~ 178 (198)
T PRK10370 160 -------------YAQAIELWQKVLDLNSPRV 178 (198)
T ss_pred -------------HHHHHHHHHHHHhhCCCCc
Confidence 9999999999998865533
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-07 Score=91.29 Aligned_cols=273 Identities=16% Similarity=0.086 Sum_probs=186.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
....+|..-+..|+|.+|.....++-+..+.. ...|..-+.+...+|+++.|-.++.++-+.. ......+.
T Consensus 86 ~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p----~l~~l~aA~AA~qrgd~~~an~yL~eaae~~-----~~~~l~v~ 156 (400)
T COG3071 86 KALNEGLLKLFEGDFQQAEKLLRRNAEHGEQP----VLAYLLAAEAAQQRGDEDRANRYLAEAAELA-----GDDTLAVE 156 (400)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHhhhcCcch----HHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----CCchHHHH
Confidence 44556888889999999999999976655432 3356666788889999999999998876652 12334567
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
...+.+....|+++.|.....++++..+ ....++.....+|...|+ +.....+.
T Consensus 157 ltrarlll~~~d~~aA~~~v~~ll~~~p------r~~~vlrLa~r~y~~~g~--------------------~~~ll~~l 210 (400)
T COG3071 157 LTRARLLLNRRDYPAARENVDQLLEMTP------RHPEVLRLALRAYIRLGA--------------------WQALLAIL 210 (400)
T ss_pred HHHHHHHHhCCCchhHHHHHHHHHHhCc------CChHHHHHHHHHHHHhcc--------------------HHHHHHHH
Confidence 7888999999999999999999888876 555677777888888888 55544444
Q ss_pred HHHHH-------------------HHHHhCC---hH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 184 EQNLA-------------------LMKEIND---TA--------------AQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 184 ~~al~-------------------~~~~~~~---~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
.+.-+ +..+..+ .. ....+...++.-+...|++++|.+..++++
T Consensus 211 ~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~L 290 (400)
T COG3071 211 PKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDAL 290 (400)
T ss_pred HHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 33211 0011000 00 012234445566667777777777777766
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
+. ..+.. .+..++ ...-+++..=++..++.+...++. +..+..||..|.+.+.|.+|..+++.|+
T Consensus 291 k~---~~D~~----L~~~~~--~l~~~d~~~l~k~~e~~l~~h~~~------p~L~~tLG~L~~k~~~w~kA~~~leaAl 355 (400)
T COG3071 291 KR---QWDPR----LCRLIP--RLRPGDPEPLIKAAEKWLKQHPED------PLLLSTLGRLALKNKLWGKASEALEAAL 355 (400)
T ss_pred Hh---ccChh----HHHHHh--hcCCCCchHHHHHHHHHHHhCCCC------hhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 22211 111111 123455555555555555544332 4688899999999999999999999888
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
...++ +..+..+|.++.++|+..+|...+++++.+..+.
T Consensus 356 ~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~ 394 (400)
T COG3071 356 KLRPS-------ASDYAELADALDQLGEPEEAEQVRREALLLTRQP 394 (400)
T ss_pred hcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence 76554 4568889999999999999999999999665443
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.4e-08 Score=111.81 Aligned_cols=168 Identities=11% Similarity=-0.005 Sum_probs=126.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+.++-.+....+...++.+.+-+++.+.+. .+..+.++.+||.+....|.+++|...++.++++.+ ....+
T Consensus 52 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~P------d~~~a 122 (694)
T PRK15179 52 LQQARQVLERHAAVHKPAAALPELLDYVRR---YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFP------DSSEA 122 (694)
T ss_pred HHHHHHHHHHhhhhcchHhhHHHHHHHHHh---ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC------CcHHH
Confidence 333344444555555555666666666554 445578888888888888888888888888888887 66778
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 222 (609)
..+++.++...++ +++|+..+++++.. .+..+.+++.+|.++..+|++++|+.+
T Consensus 123 ~~~~a~~L~~~~~--------------------~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~ 176 (694)
T PRK15179 123 FILMLRGVKRQQG--------------------IEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADAC 176 (694)
T ss_pred HHHHHHHHHHhcc--------------------HHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHH
Confidence 8888888888888 88888888888876 556677888888888888888888888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 223 HQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 223 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
|++++.-.+.. ..++.++|.++...|+.++|...|+++++...
T Consensus 177 y~~~~~~~p~~------~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~ 219 (694)
T PRK15179 177 FERLSRQHPEF------ENGYVGWAQSLTRRGALWRARDVLQAGLDAIG 219 (694)
T ss_pred HHHHHhcCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhC
Confidence 88888722222 23788888888888888888888888887654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.4e-08 Score=112.46 Aligned_cols=231 Identities=16% Similarity=0.065 Sum_probs=165.4
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
+..+....++..|...|...|++++|+..++.+++..+ .....++.+|.++...++
T Consensus 25 ~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P------~~i~~yy~~G~l~~q~~~------------------ 80 (906)
T PRK14720 25 NYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHK------KSISALYISGILSLSRRP------------------ 80 (906)
T ss_pred cCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC------cceehHHHHHHHHHhhcc------------------
Confidence 34677889999999999999999999999999988877 667799999999999888
Q ss_pred HhHHHHHHHHHHHHHHHH-------------HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMK-------------EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~-------------~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
+.++... .++.+.. .+++.+..-.++..+|.+|-.+|++++|...|++++++.+....
T Consensus 81 --~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~----- 151 (906)
T PRK14720 81 --LNDSNLL--NLIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPE----- 151 (906)
T ss_pred --hhhhhhh--hhhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHH-----
Confidence 4444333 2222221 12223334468999999999999999999999999998755444
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
++.++|..|... +.++|+.++.+|+...-........-..|..+ +...-.+++.=....++.+.. -......
T Consensus 152 -aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~~----~~~~~~~ 223 (906)
T PRK14720 152 -IVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLGH----REFTRLV 223 (906)
T ss_pred -HHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH--HhcCcccchHHHHHHHHHHhh----hccchhH
Confidence 999999999999 99999999999998755433222222222222 222222222222222222211 1122345
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
..+.-+-..|...+++++++.+++.++++. +....++..++++|.
T Consensus 224 ~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~------~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 224 GLLEDLYEPYKALEDWDEVIYILKKILEHD------NKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHhcC------CcchhhHHHHHHHHH
Confidence 566777789999999999999999999977 456678999999998
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=99.00 E-value=7.7e-07 Score=94.32 Aligned_cols=251 Identities=16% Similarity=0.165 Sum_probs=157.4
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCcHHH--
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHL----EISRQLNDKLSE-- 139 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al----~l~~~~~d~~~~-- 139 (609)
+-..|...|.+++|.+..+ ..|....-..|++.+..+...++.+.|+++|+++- ++.+-+.+.+..
T Consensus 832 lNKlyQs~g~w~eA~eiAE--------~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e 903 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAE--------TKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIE 903 (1416)
T ss_pred HHHHHHhcccHHHHHHHHh--------hccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHH
Confidence 3344555555555554332 23345566789999999999999999999999753 332222221111
Q ss_pred --------HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH-------------------H
Q psy10738 140 --------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK-------------------E 192 (609)
Q Consensus 140 --------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~-------------------~ 192 (609)
...|...|......|+ .+.|+.+|..|-..+. +
T Consensus 904 ~Yv~~~~d~~L~~WWgqYlES~Ge--------------------mdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~e 963 (1416)
T KOG3617|consen 904 QYVRRKRDESLYSWWGQYLESVGE--------------------MDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEE 963 (1416)
T ss_pred HHHHhccchHHHHHHHHHHhcccc--------------------hHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHh
Confidence 2356667777777888 7888888877755443 3
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHhCChHHHHH--------HHHHHHHHHHHhC-CHH
Q psy10738 193 INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER------LKIAREFGDKAAERR--------ANSNLGNSHIFLG-EYQ 257 (609)
Q Consensus 193 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~~~--------~~~~la~~~~~~g-~~~ 257 (609)
.+| -.+.+.||..|...|++.+|+.+|.+| +.++++++-...... -....|..|...| +.+
T Consensus 964 sgd----~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~ 1039 (1416)
T KOG3617|consen 964 SGD----KAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAH 1039 (1416)
T ss_pred ccc----HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhh
Confidence 333 247789999999999999999988765 566666544332211 1223345555555 666
Q ss_pred HHHHHHHHH------HHHH------------HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHHh
Q psy10738 258 AASEHYKRT------LVLA------------QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH------LIIAQQL 313 (609)
Q Consensus 258 ~A~~~~~~a------l~~~------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a------l~~~~~~ 313 (609)
.|...|.+| ++++ .+.-+....+..+..-+..+....+|++|..++-.+ +.+....
T Consensus 1040 ~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~ 1119 (1416)
T KOG3617|consen 1040 KAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNR 1119 (1416)
T ss_pred HHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 666665443 2222 211122223556667788888888999998876554 4443321
Q ss_pred cc-------------------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 314 MD-------------------RVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 314 ~~-------------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
+- ......++..+|.+..++|.|..|-+-|.+|-.
T Consensus 1120 nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGd 1173 (1416)
T KOG3617|consen 1120 NVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGD 1173 (1416)
T ss_pred CCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhh
Confidence 11 123456788899999999999998887776643
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.99 E-value=6e-06 Score=91.44 Aligned_cols=322 Identities=11% Similarity=-0.005 Sum_probs=235.5
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF-YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
...|+.+++.+++..+-.+...+.++..+|.+++ ...+++.|..++.+++.++++.+-......+.+.++.++...+..
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~ 116 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPK 116 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHH
Confidence 3567888888886555566777899999999998 789999999999999999888555555677888889999999888
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNL-GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~l-g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 195 (609)
. |...++++++.....+..... .++..+ ...+...++ +..|++.++.........++
T Consensus 117 ~-a~~~l~~~I~~~~~~~~~~w~-~~frll~~~l~~~~~d--------------------~~~Al~~L~~~~~~a~~~~d 174 (608)
T PF10345_consen 117 A-ALKNLDKAIEDSETYGHSAWY-YAFRLLKIQLALQHKD--------------------YNAALENLQSIAQLANQRGD 174 (608)
T ss_pred H-HHHHHHHHHHHHhccCchhHH-HHHHHHHHHHHHhccc--------------------HHHHHHHHHHHHHHhhhcCC
Confidence 7 999999999998864443222 222223 333333368 99999999999999988899
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--C--ChHHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 196 TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF--G--DKAAERRANSNL--GNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 196 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~--~~~~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~ 269 (609)
+.....+....+.++...+..+++++...++....... . .......++..+ -.+++..|+++.+...+++.-..
T Consensus 175 ~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~ 254 (608)
T PF10345_consen 175 PAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQF 254 (608)
T ss_pred HHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88888888888999999999999999999997777654 0 011112233333 33566778888888777665554
Q ss_pred HHHcCCcH------------------------------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 270 AQDLGDRA------------------------------------VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 270 ~~~~~~~~------------------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
.....+.. ..+.+|..-|......|..++|.+++.+++....+.
T Consensus 255 ~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~ 334 (608)
T PF10345_consen 255 LDEIKKSPSWPSWDEDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKL 334 (608)
T ss_pred HHHhhcCccCCCcCCCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHh
Confidence 44332211 123334444666667787889999999999988876
Q ss_pred c---c-----------------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC---CchHHHHHHHHHHHH
Q psy10738 314 M---D-----------------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD---PLGQVTAQMNVTDLR 370 (609)
Q Consensus 314 ~---~-----------------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~---~~~~~~a~~~la~l~ 370 (609)
. . ......+...++.+..-.|++.+|....+.........+. .......++..|-.+
T Consensus 335 ~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~ 414 (608)
T PF10345_consen 335 KIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYY 414 (608)
T ss_pred hccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHH
Confidence 5 0 0112334556777888899999999999998888776654 344577888888889
Q ss_pred HHcCCCCCCCC
Q psy10738 371 KALGMSTNDLS 381 (609)
Q Consensus 371 ~~~g~~~~al~ 381 (609)
...|+.+.|+.
T Consensus 415 q~~g~l~~A~~ 425 (608)
T PF10345_consen 415 QSTGDLEAALY 425 (608)
T ss_pred HHcCCHHHHHH
Confidence 99998877654
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.2e-08 Score=95.30 Aligned_cols=180 Identities=19% Similarity=0.262 Sum_probs=146.2
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
+...+...+-+....+|+|.. + ..++..+...|+-+.+..+..++... .+.....+..+|......|+|
T Consensus 48 q~~~a~~al~~~~~~~p~d~~----i-~~~a~a~~~~G~a~~~l~~~~~~~~~------~~~d~~ll~~~gk~~~~~g~~ 116 (257)
T COG5010 48 QTQGAAAALGAAVLRNPEDLS----I-AKLATALYLRGDADSSLAVLQKSAIA------YPKDRELLAAQGKNQIRNGNF 116 (257)
T ss_pred hhhHHHHHHHHHHhcCcchHH----H-HHHHHHHHhcccccchHHHHhhhhcc------CcccHHHHHHHHHHHHHhcch
Confidence 444466777777777888755 5 78889999999999888888876655 444555666689999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 196 (609)
.+|+..+.++..+.+ ....++..+|.+|...|+ ++.|..-|.+++++.
T Consensus 117 ~~A~~~~rkA~~l~p------~d~~~~~~lgaaldq~Gr--------------------~~~Ar~ay~qAl~L~------ 164 (257)
T COG5010 117 GEAVSVLRKAARLAP------TDWEAWNLLGAALDQLGR--------------------FDEARRAYRQALELA------ 164 (257)
T ss_pred HHHHHHHHHHhccCC------CChhhhhHHHHHHHHccC--------------------hhHHHHHHHHHHHhc------
Confidence 999999999998877 667899999999999999 999999999999984
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
+....+.+|+|..|+..|+++.|..++..+........ .+..|++.+....|++.+|.....+
T Consensus 165 ~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~------~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 165 PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADS------RVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCch------HHHHHHHHHHhhcCChHHHHhhccc
Confidence 34456889999999999999999999988866433222 3778999999999999999876644
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=3.1e-07 Score=88.83 Aligned_cols=188 Identities=13% Similarity=-0.025 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..-..+..|..++..|+|++|+..|++++...|..+ ....+.+.+|.+|+..+++++|+..+++.++..+. .+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~-~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~---~~~~~ 106 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP-YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNID 106 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcC---CCchH
Confidence 455677789999999999999999999999999774 45567889999999999999999999999888544 56677
Q ss_pred HHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC
Q psy10738 101 KSSGNLGNTLKVMG---------------K---YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 101 ~a~~~lg~~~~~~g---------------~---~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
.+++.+|.++...+ + ..+|+..+++.++..|.. ..
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---~y------------------------ 159 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---QY------------------------ 159 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---hh------------------------
Confidence 88999998865554 1 234556666666555522 11
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 242 (609)
..+|...+.... ...+.--..+|..|...|.|..|+.-++..++-.+.. .....+
T Consensus 160 -------------a~~A~~rl~~l~---------~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---~~~~ea 214 (243)
T PRK10866 160 -------------TTDATKRLVFLK---------DRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---QATRDA 214 (243)
T ss_pred -------------HHHHHHHHHHHH---------HHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---chHHHH
Confidence 122222211111 1122233467888888888888888888877755543 334557
Q ss_pred HHHHHHHHHHhCCHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~ 264 (609)
+..++..|..+|..++|..+..
T Consensus 215 l~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 215 LPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHcCChHHHHHHHH
Confidence 8888888888888888876654
|
|
| >KOG1128|consensus | Back alignment and domain information |
|---|
Probab=98.94 E-value=2e-08 Score=105.41 Aligned_cols=221 Identities=19% Similarity=0.154 Sum_probs=158.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.+.|+.+...|-...|+..|++.- .+.....||...|+..+|.....+-++. +..+..|..
T Consensus 402 ~~laell~slGitksAl~I~Erle------------mw~~vi~CY~~lg~~~kaeei~~q~lek-------~~d~~lyc~ 462 (777)
T KOG1128|consen 402 RLLAELLLSLGITKSALVIFERLE------------MWDPVILCYLLLGQHGKAEEINRQELEK-------DPDPRLYCL 462 (777)
T ss_pred HHHHHHHHHcchHHHHHHHHHhHH------------HHHHHHHHHHHhcccchHHHHHHHHhcC-------CCcchhHHH
Confidence 344778888888888888887742 4555667777888888887776655441 223344444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+| ++-.=-.+|+++.++... ..+++...+|......++ |.++.++++.
T Consensus 463 LG-------Dv~~d~s~yEkawElsn~-----~sarA~r~~~~~~~~~~~--------------------fs~~~~hle~ 510 (777)
T KOG1128|consen 463 LG-------DVLHDPSLYEKAWELSNY-----ISARAQRSLALLILSNKD--------------------FSEADKHLER 510 (777)
T ss_pred hh-------hhccChHHHHHHHHHhhh-----hhHHHHHhhccccccchh--------------------HHHHHHHHHH
Confidence 44 444444566666666553 334566777777777777 8888888888
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++++ .+.....|+.+|.+..+++++..|.++|..++.+.+.... +|+|++.+|+..|+-.+|...+++
T Consensus 511 sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e------aWnNls~ayi~~~~k~ra~~~l~E 578 (777)
T KOG1128|consen 511 SLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE------AWNNLSTAYIRLKKKKRAFRKLKE 578 (777)
T ss_pred Hhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh------hhhhhhHHHHHHhhhHHHHHHHHH
Confidence 8887 5666778888888888888888888888888887776655 888888888888888888888888
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
|++...+. ..++.+.-.+....|.+++|+..|.+.+.+.....+
T Consensus 579 AlKcn~~~------w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d 622 (777)
T KOG1128|consen 579 ALKCNYQH------WQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKD 622 (777)
T ss_pred HhhcCCCC------CeeeechhhhhhhcccHHHHHHHHHHHHHhhhhccc
Confidence 88765322 445666666777888888888888888877666544
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.4e-08 Score=107.85 Aligned_cols=160 Identities=8% Similarity=-0.047 Sum_probs=137.2
Q ss_pred HHHhcCChHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQA---GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~---~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
+.-..|....+.+.+-+++.. .|.+ +.++..||.+....|.+++|..+++.++++ .|....+..+++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~La~i~~~~g~~~ea~~~l~~~~~~------~Pd~~~a~~~~a 127 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVRRYPHT----ELFQVLVARALEAAHRSDEGLAVWRGIHQR------FPDSSEAFILML 127 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHHhcccc----HHHHHHHHHHHHHcCCcHHHHHHHHHHHhh------CCCcHHHHHHHH
Confidence 344445555555555555544 4444 558999999999999999999999999999 888999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
.++...+++++|+..+++++...+ ..+.+++.+|.++...|+ |++|+..|++++
T Consensus 128 ~~L~~~~~~eeA~~~~~~~l~~~p------~~~~~~~~~a~~l~~~g~--------------------~~~A~~~y~~~~ 181 (694)
T PRK15179 128 RGVKRQQGIEAGRAEIELYFSGGS------SSAREILLEAKSWDEIGQ--------------------SEQADACFERLS 181 (694)
T ss_pred HHHHHhccHHHHHHHHHHHhhcCC------CCHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHH
Confidence 999999999999999999999887 678899999999999999 999999999998
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.- .+....++.++|.++...|+.++|...|+++++....
T Consensus 182 ~~------~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~ 220 (694)
T PRK15179 182 RQ------HPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGD 220 (694)
T ss_pred hc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCc
Confidence 73 3445679999999999999999999999999987654
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=98.93 E-value=4.1e-05 Score=84.86 Aligned_cols=327 Identities=11% Similarity=-0.008 Sum_probs=226.1
Q ss_pred HHHHH-hcCChHHHHHHHHHHHHhCC--cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 29 GERLC-KAGDCRAGVAFFQAAIQAGT--DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 29 g~~~~-~~g~~~~A~~~~~~al~~~~--~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
|.+++ ...+++.|..++++++.+.. +-.+....+.+.++.++...+... |...+.+.++.++..+.........+.
T Consensus 66 a~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll 144 (608)
T PF10345_consen 66 ASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLL 144 (608)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 66665 78899999999999988764 333344566778899998888777 999999999998875544333222222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
....+...+++..|++.++....+....+++.....+....+.++...+. .+.+++...+
T Consensus 145 ~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~--------------------~~d~~~~l~~ 204 (608)
T PF10345_consen 145 KIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGS--------------------PDDVLELLQR 204 (608)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCC--------------------chhHHHHHHH
Confidence 23333334899999999999999998888888888888888888888887 7778888888
Q ss_pred HHHHHHHh--CC--hHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-----------------------
Q psy10738 186 NLALMKEI--ND--TAAQGRACGNL--GNTYYLLGNFKQAIYYHQERLKIAREFGDK----------------------- 236 (609)
Q Consensus 186 al~~~~~~--~~--~~~~~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~~----------------------- 236 (609)
+....... .. ......++..+ -.++...|+++.+...+++.-.........
T Consensus 205 ~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~~~~ 284 (608)
T PF10345_consen 205 AIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGSSNS 284 (608)
T ss_pred HHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeecccccccC
Confidence 77666644 11 12222233333 335566788888877766654444332111
Q ss_pred -------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---Cc-----------------HHHHHHH
Q psy10738 237 -------------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---DR-----------------AVEAQAC 283 (609)
Q Consensus 237 -------------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~-----------------~~~~~~~ 283 (609)
...+.+|..-|......+..++|.+++.+++....+.. +. .....+.
T Consensus 285 ~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~ 364 (608)
T PF10345_consen 285 GGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLL 364 (608)
T ss_pred CCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHH
Confidence 11234555556677777888899999999999887754 00 1123455
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc---hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-----HcCC
Q psy10738 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK-----QLGD 355 (609)
Q Consensus 284 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~-----~~~~ 355 (609)
..++.+....+++.+|..............+. ......+++..|..+...|+.+.|..+|.+..-... ....
T Consensus 365 ~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~ 444 (608)
T PF10345_consen 365 FYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKF 444 (608)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcc
Confidence 66788888999999999999988887766544 344567888999999999999999999985552221 1222
Q ss_pred CchHHHHHHHHHHHHHHcCCC
Q psy10738 356 PLGQVTAQMNVTDLRKALGMS 376 (609)
Q Consensus 356 ~~~~~~a~~~la~l~~~~g~~ 376 (609)
.....-+..++.-++...+..
T Consensus 445 ~El~ila~LNl~~I~~~~~~~ 465 (608)
T PF10345_consen 445 RELYILAALNLAIILQYESSR 465 (608)
T ss_pred hHHHHHHHHHHHHHhHhhccc
Confidence 233445666666666655543
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-08 Score=93.20 Aligned_cols=158 Identities=23% Similarity=0.285 Sum_probs=138.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+..+..++..|+-+.+..+..++....|.+.. ++..+|...+..|+|..|+..++++..+ .+....++..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~----ll~~~gk~~~~~g~~~~A~~~~rkA~~l------~p~d~~~~~~ 139 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRE----LLAAQGKNQIRNGNFGEAVSVLRKAARL------APTDWEAWNL 139 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHH----HHHHHHHHHHHhcchHHHHHHHHHHhcc------CCCChhhhhH
Confidence 44577788889999999999998888887754 4555999999999999999999999999 8889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.+|...|++++|..-|.+++++.+ ....+..|+|..|...|+ ++.|..++..
T Consensus 140 lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~~nNlgms~~L~gd--------------------~~~A~~lll~ 193 (257)
T COG5010 140 LGAALDQLGRFDEARRAYRQALELAP------NEPSIANNLGMSLLLRGD--------------------LEDAETLLLP 193 (257)
T ss_pred HHHHHHHccChhHHHHHHHHHHHhcc------CCchhhhhHHHHHHHcCC--------------------HHHHHHHHHH
Confidence 99999999999999999999999988 566799999999999999 9999999988
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+... ......+..|++.+....|++++|.....+
T Consensus 194 a~l~------~~ad~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 194 AYLS------PAADSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred HHhC------CCCchHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7654 344456889999999999999999877654
|
|
| >KOG2376|consensus | Back alignment and domain information |
|---|
Probab=98.92 E-value=2.4e-06 Score=88.02 Aligned_cols=206 Identities=19% Similarity=0.129 Sum_probs=149.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.++..-..+...|+|++|+....+.+...|++.. +...--.+....+.|++|+...+.-... .......
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~----a~~cKvValIq~~ky~~ALk~ikk~~~~-------~~~~~~~ 82 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSIVPDDED----AIRCKVVALIQLDKYEDALKLIKKNGAL-------LVINSFF 82 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHh----hHhhhHhhhhhhhHHHHHHHHHHhcchh-------hhcchhh
Confidence 3444566778899999999999999999988754 5566667788889999998554432221 1111122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
+..+.|.+.++..++|+..++-+ .. ....++...|.+++.+|+ |++|...|
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~~~----~~-----~~~~ll~L~AQvlYrl~~--------------------ydealdiY 133 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLKGL----DR-----LDDKLLELRAQVLYRLER--------------------YDEALDIY 133 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHhcc----cc-----cchHHHHHHHHHHHHHhh--------------------HHHHHHHH
Confidence 68899999999999999998811 11 112356677888888888 88888888
Q ss_pred HHHHHHH------------------------HHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh---CC
Q psy10738 184 EQNLALM------------------------KEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF---GD 235 (609)
Q Consensus 184 ~~al~~~------------------------~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~ 235 (609)
+..++-- +.... +......++|.+.++...|+|.+|++.+++++.++.+. ++
T Consensus 134 ~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d 213 (652)
T KOG2376|consen 134 QHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDED 213 (652)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccc
Confidence 7763210 00010 11234578999999999999999999999998888762 11
Q ss_pred ------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 236 ------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 236 ------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
......+...++.++..+|+.++|...|...+..
T Consensus 214 ~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 214 TNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh
Confidence 1223567888999999999999999999887664
|
|
| >KOG2300|consensus | Back alignment and domain information |
|---|
Probab=98.91 E-value=9e-06 Score=81.90 Aligned_cols=299 Identities=14% Similarity=0.040 Sum_probs=214.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHh----CCc------------chhH-------HHHHHHHH--HHHHHHhCC
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQA----GTD------------DLRT-------LSAIYSQL--GNAYFYLGD 75 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~----~~~------------~~~~-------~a~~~~~l--g~~~~~~g~ 75 (609)
..+-+.++-..|...|+-..+...+++.-+. .+. .+.. ...++..+ -..-...|-
T Consensus 211 kvFyl~lql~yy~~~gq~rt~k~~lkQLQ~siqtist~~~~h~e~ilgsps~~l~~wlpkeqicaLV~l~tv~hsm~~gy 290 (629)
T KOG2300|consen 211 KVFYLVLQLSYYLLPGQVRTVKPALKQLQDSIQTISTSSRGHDEKILGSPSPILFEWLPKEQICALVYLVTVIHSMPAGY 290 (629)
T ss_pred HHHHHHHHHHHHhcccchhhhHHHHHHHHHHHhccCCCCCCccccccCCCChHHHhhccHhhhHhhhhhhHHhhhhhhHH
Confidence 3444555666777888888887777755331 110 0110 11111111 111224578
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhH--------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHH
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGE--------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRAL 143 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~--------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~ 143 (609)
+++|.++-++++....+....+.. ...+-++..+-...|++.+|++....+.+.......+ ...+.++
T Consensus 291 ~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih 370 (629)
T KOG2300|consen 291 FKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIH 370 (629)
T ss_pred HHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHH
Confidence 899999999999887776544322 3345566777788899999999999999888776653 2456677
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
+.+|......+. |+.|...|..|.+.... ....+.+..|+|.+|...|+-+.-.+.+
T Consensus 371 ~LlGlys~sv~~--------------------~enAe~hf~~a~k~t~~---~dl~a~~nlnlAi~YL~~~~~ed~y~~l 427 (629)
T KOG2300|consen 371 MLLGLYSHSVNC--------------------YENAEFHFIEATKLTES---IDLQAFCNLNLAISYLRIGDAEDLYKAL 427 (629)
T ss_pred HHHhhHhhhcch--------------------HHHHHHHHHHHHHhhhH---HHHHHHHHHhHHHHHHHhccHHHHHHHH
Confidence 888888888888 99999999999887544 3446778889999999988754433222
Q ss_pred HHHHHHHHHhC----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 224 QERLKIAREFG----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 224 ~~al~~~~~~~----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
+. +.+.+. .....+.+++..|...+.++++.+|...+.+.++++...+.....+..+..||.+....|+..++
T Consensus 428 d~---i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~rL~a~~LvLLs~v~lslgn~~es 504 (629)
T KOG2300|consen 428 DL---IGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLNRLTACSLVLLSHVFLSLGNTVES 504 (629)
T ss_pred Hh---cCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 22 222211 12334668888999999999999999999999999865555666777888999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC--hHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN--HEKALYFATK 345 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~--~~~A~~~~~~ 345 (609)
.+...-++.++.++.|........-.+-.+|...|+ ...+.+.+.+
T Consensus 505 ~nmvrpamqlAkKi~Di~vqLws~si~~~L~~a~g~~~~~~e~e~~~~ 552 (629)
T KOG2300|consen 505 RNMVRPAMQLAKKIPDIPVQLWSSSILTDLYQALGEKGNEMENEAFRK 552 (629)
T ss_pred HhccchHHHHHhcCCCchHHHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 999999999999999977777777778888999998 5555555554
|
|
| >KOG3785|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.7e-07 Score=90.36 Aligned_cols=274 Identities=18% Similarity=0.142 Sum_probs=168.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
+-+....||..|+.+++-.+..+.+. ....-.++|.|++++|+|++|+..|+-+... ....++...+++-+
T Consensus 30 edfls~rDytGAislLefk~~~~~EE---E~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREE---EDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAPAELGVNLACC 100 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhh---hHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCCcccchhHHHH
Confidence 45677889999999999988665432 2346678999999999999999999876653 33456788999999
Q ss_pred HHHcCCHHHHHHHHHHHH----------HHHHHcCCcHHHHHHH----------HHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 110 LKVMGKYDEAMVCCKRHL----------EISRQLNDKLSEGRAL----------YNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al----------~l~~~~~d~~~~~~~~----------~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
++.+|.|.+|.....++- .++.+.+|.......+ ..||.+++..-.
T Consensus 101 ~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~H-------------- 166 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTLEDQLSLASVHYMRMH-------------- 166 (557)
T ss_pred HHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHH--------------
Confidence 999999999988766542 2333444433332222 233444444444
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS 249 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 249 (609)
|++|++.|.+.+.- .+.......+++.+|+++.-|+-+.+.+.--+.-. ++... +....+-.
T Consensus 167 ------YQeAIdvYkrvL~d------n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~---pdSti---A~NLkacn 228 (557)
T KOG3785|consen 167 ------YQEAIDVYKRVLQD------NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQF---PDSTI---AKNLKACN 228 (557)
T ss_pred ------HHHHHHHHHHHHhc------ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhC---CCcHH---HHHHHHHH
Confidence 77777777766543 55556667788999999988888877766554433 33221 22222222
Q ss_pred HHHh--CC----------------HHHHHHHHH----------HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 250 HIFL--GE----------------YQAASEHYK----------RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301 (609)
Q Consensus 250 ~~~~--g~----------------~~~A~~~~~----------~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 301 (609)
++++ |+ |+.+...++ -|++..+.+-+ ..+.+..+|...|..+++..+|+.
T Consensus 229 ~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~--~IPEARlNL~iYyL~q~dVqeA~~ 306 (557)
T KOG3785|consen 229 LFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMK--HIPEARLNLIIYYLNQNDVQEAIS 306 (557)
T ss_pred HhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHh--hChHhhhhheeeecccccHHHHHH
Confidence 2221 22 222222221 12333332211 235567788888888888888876
Q ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 302 ~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
..+..-. ....-+...|.++.++|+--...++.+-|-+.+.-.|.
T Consensus 307 L~Kdl~P---------ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~ 351 (557)
T KOG3785|consen 307 LCKDLDP---------TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGE 351 (557)
T ss_pred HHhhcCC---------CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcc
Confidence 6543211 12234566677777777766666666666555554443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.87 E-value=3.3e-08 Score=77.67 Aligned_cols=75 Identities=29% Similarity=0.510 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA-AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
+..+.++.++|.+|..+|+|++|+.+|++++++....++.. ..+.++.++|.++...|++++|++++++++++.+
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 45567778888888888888888888888888866666544 3577777888888888888888888888777654
|
... |
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.5e-08 Score=87.59 Aligned_cols=112 Identities=13% Similarity=0.217 Sum_probs=89.1
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~ 122 (609)
+.|++++..+|++. .+...+|..+...|++++|+..+++++.. .+....++..+|.++...|++++|+.+
T Consensus 4 ~~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~~~~~~A~~~ 73 (135)
T TIGR02552 4 ATLKDLLGLDSEQL----EQIYALAYNLYQQGRYDEALKLFQLLAAY------DPYNSRYWLGLAACCQMLKEYEEAIDA 73 (135)
T ss_pred hhHHHHHcCChhhH----HHHHHHHHHHHHcccHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45777888887763 36778888888888888888888888777 566778888888888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 123 ~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
+++++.+.+ .....++.+|.+|...|+ +++|+.++++++++.
T Consensus 74 ~~~~~~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 74 YALAAALDP------DDPRPYFHAAECLLALGE--------------------PESALKALDLAIEIC 115 (135)
T ss_pred HHHHHhcCC------CChHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhc
Confidence 888877654 445677888888888888 888888888888764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-08 Score=101.18 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+..+|..++..|+|++|+.+|.++++.+|.+. .++..+|.+|..+|++++|+..+++++.+ .+....++
T Consensus 4 ~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~----~a~~~~a~~~~~~g~~~eAl~~~~~Al~l------~P~~~~a~ 73 (356)
T PLN03088 4 DLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA----ELYADRAQANIKLGNFTEAVADANKAIEL------DPSLAKAY 73 (356)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcCCHHHH
Confidence 466779999999999999999999999999885 48899999999999999999999999999 77788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.+|.++..+|+|++|+.+|++++.+.+
T Consensus 74 ~~lg~~~~~lg~~~eA~~~~~~al~l~P 101 (356)
T PLN03088 74 LRKGTACMKLEEYQTAKAALEKGASLAP 101 (356)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999999876
|
|
| >KOG1585|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=1.4e-06 Score=80.21 Aligned_cols=212 Identities=9% Similarity=-0.013 Sum_probs=170.1
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
....+..|..-+..|....+ |++|...+.+|.+..+.......-+.++-..|.+...+..
T Consensus 27 ~dgaas~yekAAvafRnAk~--------------------feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~k 86 (308)
T KOG1585|consen 27 WDGAASLYEKAAVAFRNAKK--------------------FEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSK 86 (308)
T ss_pred chhhHHHHHHHHHHHHhhcc--------------------HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 33455566666777777788 9999999999998888877778888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 216 FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
+.++..+++++..++.+.+.+...+.++-.-|.+ +..-+.++|+.+|++++.+....+........+...++++.....
T Consensus 87 lsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~-lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~k 165 (308)
T KOG1585|consen 87 LSEVVDLYEKASELYVECGSPDTAAMALEKAAKA-LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEK 165 (308)
T ss_pred hHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHH
Confidence 9999999999999999999877766666555554 466789999999999999998876666667778889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q psy10738 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 296 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~ 370 (609)
+++|-..+.+-..+.............+.....+|....+|..|..+++...++-.-.+ +...++..+|-..|
T Consensus 166 f~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~--sed~r~lenLL~ay 238 (308)
T KOG1585|consen 166 FTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLK--SEDSRSLENLLTAY 238 (308)
T ss_pred hhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccC--hHHHHHHHHHHHHh
Confidence 99999999988888777766666667777777888888899999999988766542222 34555666665555
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.6e-07 Score=87.26 Aligned_cols=223 Identities=18% Similarity=0.166 Sum_probs=160.2
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
+.+..+|..||+++..-.+.+|.+. ..+..+|.||++..+|..|..+|++.-.+ .|.........+..++
T Consensus 20 lI~d~ry~DaI~~l~s~~Er~p~~r----AgLSlLgyCYY~~Q~f~~AA~CYeQL~ql------~P~~~qYrlY~AQSLY 89 (459)
T KOG4340|consen 20 LIRDARYADAIQLLGSELERSPRSR----AGLSLLGYCYYRLQEFALAAECYEQLGQL------HPELEQYRLYQAQSLY 89 (459)
T ss_pred HHHHhhHHHHHHHHHHHHhcCccch----HHHHHHHHHHHHHHHHHHHHHHHHHHHhh------ChHHHHHHHHHHHHHH
Confidence 4677789999999999998888663 37789999999999999999999998888 6667777778888999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
..+.+..|+.......+. ......++-.-+.+.+..++ +..+....++
T Consensus 90 ~A~i~ADALrV~~~~~D~------~~L~~~~lqLqaAIkYse~D--------------------l~g~rsLveQ------ 137 (459)
T KOG4340|consen 90 KACIYADALRVAFLLLDN------PALHSRVLQLQAAIKYSEGD--------------------LPGSRSLVEQ------ 137 (459)
T ss_pred HhcccHHHHHHHHHhcCC------HHHHHHHHHHHHHHhccccc--------------------CcchHHHHHh------
Confidence 999999988776544332 22334455555556666666 5555444333
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
.. ....+....+.|.+.++.|+|+.|++-|+.+++...-..- .-++++.+++..|++..|+++..+.++..-
T Consensus 138 -lp-~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl------lAYniALaHy~~~qyasALk~iSEIieRG~ 209 (459)
T KOG4340|consen 138 -LP-SENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL------LAYNLALAHYSSRQYASALKHISEIIERGI 209 (459)
T ss_pred -cc-CCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCch------hHHHHHHHHHhhhhHHHHHHHHHHHHHhhh
Confidence 11 1234567889999999999999999999999886433222 667899999999999999999887766432
Q ss_pred Hc----C--------------Cc-----HHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 272 DL----G--------------DR-----AVEAQACYSLGNTYTLLRDYPTAIDYHL 304 (609)
Q Consensus 272 ~~----~--------------~~-----~~~~~~~~~la~~~~~~g~~~~A~~~~~ 304 (609)
.. + ++ .....++...+.++++.|+++.|.+.+.
T Consensus 210 r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 210 RQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 21 0 00 1123445555666777777777765553
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.2e-06 Score=77.38 Aligned_cols=194 Identities=15% Similarity=0.170 Sum_probs=150.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.++..-|+.|....++..|=..|.++-+...+.++....+..|...+++|... +..+|+.+++++++++...|.-..-+
T Consensus 35 dl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Grf~~aA 113 (288)
T KOG1586|consen 35 ELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGRFTMAA 113 (288)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 34444566777778888888888888888888888788888888888888765 99999999999999999888777778
Q ss_pred HHHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 141 RALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 141 ~~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
.-+..+|.+|..- .+ +++|+.+|+++-+.++.-......-.++...+..-..+++|.+|
T Consensus 114 k~~~~iaEiyEsdl~d--------------------~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~A 173 (288)
T KOG1586|consen 114 KHHIEIAEIYESDLQD--------------------FEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKA 173 (288)
T ss_pred hhhhhHHHHHhhhHHH--------------------HHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 8888999998765 66 99999999999998876555555556777888888899999999
Q ss_pred HHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 220 IYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~-~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
+..|++.....-.+.-..+.+ ..+..-|.+++...+.-.+...+++..++.|...+
T Consensus 174 i~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d 230 (288)
T KOG1586|consen 174 IDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD 230 (288)
T ss_pred HHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence 999998876554433222222 23445667777778887777777777777776644
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.84 E-value=6.4e-07 Score=84.52 Aligned_cols=107 Identities=16% Similarity=0.115 Sum_probs=81.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|+|.+|+..|++++...|..+. ...+.+.+|.+++..|+++.|+..+++.+...+. .+....+
T Consensus 6 ~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~-a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~---~~~~~~A 81 (203)
T PF13525_consen 6 EALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY-APQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPN---SPKADYA 81 (203)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT----TTHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---CcchhhH
Confidence 45677899999999999999999999999987654 5678899999999999999999999998887554 5566788
Q ss_pred HHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHc
Q psy10738 103 SGNLGNTLKVMG-----------KYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 103 ~~~lg~~~~~~g-----------~~~~A~~~~~~al~l~~~~ 133 (609)
++.+|.++.... ...+|+..|+..+...|..
T Consensus 82 ~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S 123 (203)
T PF13525_consen 82 LYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNS 123 (203)
T ss_dssp HHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTS
T ss_pred HHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCc
Confidence 999998876653 2346777777766666543
|
|
| >KOG1586|consensus | Back alignment and domain information |
|---|
Probab=98.83 E-value=2e-06 Score=78.75 Aligned_cols=204 Identities=13% Similarity=0.109 Sum_probs=149.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
-.+++++|.++|.++-.+++-..+ +..|-..|.++-++..
T Consensus 26 g~~k~eeAadl~~~Aan~yklaK~----------------------------------------w~~AG~aflkaA~~h~ 65 (288)
T KOG1586|consen 26 GSNKYEEAAELYERAANMYKLAKN----------------------------------------WSAAGDAFLKAADLHL 65 (288)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHh----------------------------------------HHHHHHHHHHHHHHHH
Confidence 345788888888887766653333 4455555555555555
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEHYKRTLVLA 270 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~~~~al~~~ 270 (609)
+.++....+.+|...+++|.. ++..+|+.+++++++++...+.-..-+.-+..+|.+|..- .++++|+.+|+++-+.+
T Consensus 66 k~~skhDaat~YveA~~cykk-~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYKK-VDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hcCCchhHHHHHHHHHHHhhc-cChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 555555556666666776654 5999999999999999999888777778888999999865 89999999999999988
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
..-........++...+..-...++|.+|+..|++.....-..+- .+.....++.-|.|++..++.-.+...+++..++
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 765444445567777888888999999999999987665443322 3344455667788888888888888777777776
Q ss_pred HHHcCCC
Q psy10738 350 SKQLGDP 356 (609)
Q Consensus 350 ~~~~~~~ 356 (609)
.....+.
T Consensus 225 dP~F~ds 231 (288)
T KOG1586|consen 225 DPAFTDS 231 (288)
T ss_pred CCccccc
Confidence 6555443
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=98.82 E-value=6.2e-08 Score=76.08 Aligned_cols=76 Identities=33% Similarity=0.618 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH-HHHHHHHHHHHHHHHcCC
Q psy10738 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA-AQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~lg~~~~~~g~ 215 (609)
+..+.++.++|.+|...|+ |++|+.+|++++++.+..++.. ..+.++.++|.++..+|+
T Consensus 2 ~~~a~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~ 61 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGR--------------------YDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGD 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCC
Confidence 3567899999999999999 9999999999999977777654 579999999999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q psy10738 216 FKQAIYYHQERLKIARE 232 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~ 232 (609)
+++|+.++++++++.++
T Consensus 62 ~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 62 YEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhcC
Confidence 99999999999998753
|
... |
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.82 E-value=1.4e-06 Score=80.81 Aligned_cols=195 Identities=16% Similarity=0.050 Sum_probs=135.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
.+.++-++...+.+.....-.-.+.....+-....+....|+.+-|..|+++...-++ ...++...-|..+...
T Consensus 26 rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp------~S~RV~~lkam~lEa~ 99 (289)
T KOG3060|consen 26 RNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFP------GSKRVGKLKAMLLEAT 99 (289)
T ss_pred cCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCC------CChhHHHHHHHHHHHh
Confidence 3455556666555554443222334455666667777778888888888887666554 3345566677788888
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
|. +++|+++|+..++- .+....++-..--+...+|+.-+|++.+.+-++.+...
T Consensus 100 ~~--------------------~~~A~e~y~~lL~d------dpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D 153 (289)
T KOG3060|consen 100 GN--------------------YKEAIEYYESLLED------DPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMND 153 (289)
T ss_pred hc--------------------hhhHHHHHHHHhcc------CcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCc
Confidence 88 88888888876653 34444455555556667788888888888877776654
Q ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHH
Q psy10738 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHLIIA 310 (609)
Q Consensus 234 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~ 310 (609)
.+ +|..++.+|+..|+|++|.-+|++.+-+.|-. ...+..+|.+++-+| ++.-|.+||.+++++.
T Consensus 154 ~E------AW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n------~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 154 QE------AWHELAEIYLSEGDFEKAAFCLEELLLIQPFN------PLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred HH------HHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 44 88889999999999999999998887766542 455666777766555 5778888999998887
Q ss_pred HH
Q psy10738 311 QQ 312 (609)
Q Consensus 311 ~~ 312 (609)
+.
T Consensus 222 ~~ 223 (289)
T KOG3060|consen 222 PK 223 (289)
T ss_pred hH
Confidence 73
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.81 E-value=7.9e-08 Score=83.98 Aligned_cols=99 Identities=11% Similarity=0.058 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|++++|..+|+-+...+|.+. ..|+.||.++..+|+|.+|+..|.+++.+ .+..+..
T Consensus 36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~----~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------~~ddp~~ 105 (157)
T PRK15363 36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF----DYWFRLGECCQAQKHWGEAIYAYGRAAQI------KIDAPQA 105 (157)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCchH
Confidence 4556669999999999999999999999999874 48999999999999999999999999999 7888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.++|.++...|+.+.|.+.|+.++....
T Consensus 106 ~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 106 PWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999884
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.4e-05 Score=85.03 Aligned_cols=232 Identities=16% Similarity=0.164 Sum_probs=145.8
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH----HHHcCChhhH----------HHHHHHHHHHHHHcCCHHHHH
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL----ARNMEDKLGE----------AKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~----~~~~~d~~~~----------~~a~~~lg~~~~~~g~~~~A~ 120 (609)
|.-.+-..|++.+..+...++.+.|+++|+++-.. .+-+.+.+.. ...|...|..+...|+.+.|+
T Consensus 853 DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl 932 (1416)
T KOG3617|consen 853 DRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAAL 932 (1416)
T ss_pred cceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHH
Confidence 33335567889999999999999999999986332 2222222222 346677899999999999999
Q ss_pred HHHHHHHHHHHHcC------C---------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 121 VCCKRHLEISRQLN------D---------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 121 ~~~~~al~l~~~~~------d---------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.+|..|-+.+.... . ....-.+.+.||..|...|+ +.+|+.+|.+
T Consensus 933 ~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~--------------------v~~Av~FfTr 992 (1416)
T KOG3617|consen 933 SFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGD--------------------VVKAVKFFTR 992 (1416)
T ss_pred HHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHH--------------------HHHHHHHHHH
Confidence 99988776544221 0 11223478899999999999 8999988876
Q ss_pred H------HHHHHHhCChHHHHH--------HHHHHHHHHHHcC-CHHHHHHHHHHH------HHHH------------HH
Q psy10738 186 N------LALMKEINDTAAQGR--------ACGNLGNTYYLLG-NFKQAIYYHQER------LKIA------------RE 232 (609)
Q Consensus 186 a------l~~~~~~~~~~~~~~--------~~~~lg~~~~~~g-~~~~A~~~~~~a------l~~~------------~~ 232 (609)
| +.++++.+-...... -....+..|...| ++..|...|.+| ++++ .+
T Consensus 993 AqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~ 1072 (1416)
T KOG3617|consen 993 AQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAK 1072 (1416)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHH
Confidence 5 445554432221111 1222344455555 666776666554 2222 22
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH------HHHHHHHHcCC-------------------cHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYK------RTLVLAQDLGD-------------------RAVEAQACYSLG 287 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~------~al~~~~~~~~-------------------~~~~~~~~~~la 287 (609)
.-+.......+..-+..+....+|++|..++- .|+.+....+- ......++..+|
T Consensus 1073 DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqva 1152 (1416)
T KOG3617|consen 1073 DLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVA 1152 (1416)
T ss_pred hcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHH
Confidence 11111123345556777778888888877654 44444433221 122456788899
Q ss_pred HHHHHhCCHHHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~a 306 (609)
.++.++|.|..|-+-|.+|
T Consensus 1153 e~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1153 ELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred HHHHhccchHHHHHHHhhh
Confidence 9999999999988877664
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.7e-06 Score=83.08 Aligned_cols=238 Identities=18% Similarity=0.119 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...++..-..||++.|-.++.++-+..+++. -.++...+......|+++.|..-..++++. .+....+
T Consensus 119 l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~---l~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~v 189 (400)
T COG3071 119 LAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDT---LAVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEV 189 (400)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHhccCCCch---HHHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHH
Confidence 3455558888999999999999999988865542 236677888999999999999999999888 7778888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHHcCC---cH--------------HHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEI-------------------SRQLND---KL--------------SEGRALYNL 146 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l-------------------~~~~~d---~~--------------~~~~~~~~l 146 (609)
+.....+|...|++.+...+..+.-+- ..+..+ .. ....+...+
T Consensus 190 lrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~ 269 (400)
T COG3071 190 LRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAY 269 (400)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHH
Confidence 888999999999998887777543321 000000 00 012233344
Q ss_pred HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 147 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
+.-+...|+ +++|.+..+++++- ..|.. .+..++ ....+++..=++..++.
T Consensus 270 a~~li~l~~--------------------~~~A~~~i~~~Lk~---~~D~~----L~~~~~--~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 270 AERLIRLGD--------------------HDEAQEIIEDALKR---QWDPR----LCRLIP--RLRPGDPEPLIKAAEKW 320 (400)
T ss_pred HHHHHHcCC--------------------hHHHHHHHHHHHHh---ccChh----HHHHHh--hcCCCCchHHHHHHHHH
Confidence 555556666 78888877777654 22221 222222 22456777777777777
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 227 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 227 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
++..+.... .+..||.++.+.+.|.+|..+++.+++..+. +..+..+|.++.+.|+..+|....+++
T Consensus 321 l~~h~~~p~------L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-------~~~~~~la~~~~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 321 LKQHPEDPL------LLSTLGRLALKNKLWGKASEALEAALKLRPS-------ASDYAELADALDQLGEPEEAEQVRREA 387 (400)
T ss_pred HHhCCCChh------HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-------hhhHHHHHHHHHHcCChHHHHHHHHHH
Confidence 665554443 8899999999999999999999999887665 667889999999999999999999999
Q ss_pred HHHHH
Q psy10738 307 LIIAQ 311 (609)
Q Consensus 307 l~~~~ 311 (609)
+....
T Consensus 388 L~~~~ 392 (400)
T COG3071 388 LLLTR 392 (400)
T ss_pred HHHhc
Confidence 85544
|
|
| >KOG0553|consensus | Back alignment and domain information |
|---|
Probab=98.78 E-value=6.5e-08 Score=92.06 Aligned_cols=122 Identities=26% Similarity=0.333 Sum_probs=104.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..++-+-.-|+-+...++|.+|+..|.+||++.+ ..+..|.+.+.+|..+|. |+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P------~nAVyycNRAAAy~~Lg~--------------------~~ 132 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDP------TNAVYYCNRAAAYSKLGE--------------------YE 132 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC------CcchHHHHHHHHHHHhcc--------------------hH
Confidence 3455666778888999999999999999999987 667788899999999999 99
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
.|++-.+.++.+ .+....+|..||.+|+.+|++++|++.|++++++.+.... ...+|..+-..+++..
T Consensus 133 ~AVkDce~Al~i------Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~------~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 133 DAVKDCESALSI------DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES------YKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHHHhc------ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH------HHHHHHHHHHHhcCCC
Confidence 999999999998 7788899999999999999999999999999999877653 6677777777777666
|
|
| >KOG4340|consensus | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-06 Score=80.22 Aligned_cols=170 Identities=19% Similarity=0.128 Sum_probs=116.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----------HHHHHc-
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL----------TLARNM- 93 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al----------~~~~~~- 93 (609)
+.+.|.+|+...+|..|..+|++.-...|.... .....+..++..+.+..|+....... ++-..+
T Consensus 47 LSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~q----YrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIk 122 (459)
T KOG4340|consen 47 LSLLGYCYYRLQEFALAAECYEQLGQLHPELEQ----YRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIK 122 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHH----HHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 344577888888888888888887777765322 23334445555555555554433221 111110
Q ss_pred ---CC------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 94 ---ED------------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 94 ---~d------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
+| ..+.+....+.|-+.++.|+|+.|++-|+.|++... .....-++++.+++..|+
T Consensus 123 Yse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG------yqpllAYniALaHy~~~q--- 193 (459)
T KOG4340|consen 123 YSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG------YQPLLAYNLALAHYSSRQ--- 193 (459)
T ss_pred cccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC------CCchhHHHHHHHHHhhhh---
Confidence 11 134577788999999999999999999999998765 445577899999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh------------------CCh-----HHHHHHHHHHHHHHHHcCC
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI------------------NDT-----AAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~------------------~~~-----~~~~~~~~~lg~~~~~~g~ 215 (609)
+..|+++..+.++..-+. +++ .....+++..+-++++.|+
T Consensus 194 -----------------yasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n 256 (459)
T KOG4340|consen 194 -----------------YASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRN 256 (459)
T ss_pred -----------------HHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhccc
Confidence 999999998877643221 111 2345677778889999999
Q ss_pred HHHHHHHHH
Q psy10738 216 FKQAIYYHQ 224 (609)
Q Consensus 216 ~~~A~~~~~ 224 (609)
++.|.+.+.
T Consensus 257 ~eAA~eaLt 265 (459)
T KOG4340|consen 257 YEAAQEALT 265 (459)
T ss_pred HHHHHHHhh
Confidence 999877654
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.1e-07 Score=85.19 Aligned_cols=130 Identities=18% Similarity=0.177 Sum_probs=96.6
Q ss_pred HhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH
Q psy10738 33 CKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112 (609)
Q Consensus 33 ~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~ 112 (609)
+-.+.|..+...+...++..+.+. .+.+++.+|.++...|++++|+..+++++.+.. ++...+.++.++|.++..
T Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~---~~~~~~~~~~~lg~~~~~ 84 (168)
T CHL00033 10 FIDKTFTIVADILLRILPTTSGEK--EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEI---DPYDRSYILYNIGLIHTS 84 (168)
T ss_pred ccccccccchhhhhHhccCCchhH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccc---cchhhHHHHHHHHHHHHH
Confidence 344556777777766655444433 477899999999999999999999999998732 233456789999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH-------HcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH-------AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 113 ~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~-------~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.|++++|+.++++++.+.+.. ...+.++|.++. ..|+ ++.|+..+.+
T Consensus 85 ~g~~~eA~~~~~~Al~~~~~~------~~~~~~la~i~~~~~~~~~~~g~--------------------~~~A~~~~~~ 138 (168)
T CHL00033 85 NGEHTKALEYYFQALERNPFL------PQALNNMAVICHYRGEQAIEQGD--------------------SEIAEAWFDQ 138 (168)
T ss_pred cCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHhhHHHHHccc--------------------HHHHHHHHHH
Confidence 999999999999999885532 344555555555 7777 7777777777
Q ss_pred HHHHHHHh
Q psy10738 186 NLALMKEI 193 (609)
Q Consensus 186 al~~~~~~ 193 (609)
++..+++.
T Consensus 139 a~~~~~~a 146 (168)
T CHL00033 139 AAEYWKQA 146 (168)
T ss_pred HHHHHHHH
Confidence 76665543
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.6e-08 Score=83.91 Aligned_cols=114 Identities=21% Similarity=0.172 Sum_probs=92.3
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCC
Q psy10738 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161 (609)
Q Consensus 82 ~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~ 161 (609)
.+++++.. .+....+...+|.++...|++++|+..+++++...+ ....++..+|.++...|+
T Consensus 5 ~~~~~l~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~la~~~~~~~~------ 66 (135)
T TIGR02552 5 TLKDLLGL------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDP------YNSRYWLGLAACCQMLKE------ 66 (135)
T ss_pred hHHHHHcC------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHH------
Confidence 45556665 666678888999999999999999999988887654 456788899999999999
Q ss_pred CCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
+++|+.++++++.+ .+.....+.++|.++...|++++|+.++++++++.+..
T Consensus 67 --------------~~~A~~~~~~~~~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 118 (135)
T TIGR02552 67 --------------YEEAIDAYALAAAL------DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGEN 118 (135)
T ss_pred --------------HHHHHHHHHHHHhc------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 99999999888876 23345678889999999999999999999988876644
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.5e-06 Score=82.01 Aligned_cols=194 Identities=18% Similarity=0.145 Sum_probs=116.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...++..|..++..|+|.+|+..|++.+...+. .+....+.+.+|.+++..|+++.|+..+++.+...|... ..
T Consensus 5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---~~ 78 (203)
T PF13525_consen 5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP---KA 78 (203)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T---TH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---ch
Confidence 567899999999999999999999998877443 566788999999999999999999999999998877543 56
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+++.+|.+++......- ..........+|+..++..+..++...-. .+|
T Consensus 79 ~~A~Y~~g~~~~~~~~~~~---------~~~~D~~~~~~A~~~~~~li~~yP~S~y~--------------------~~A 129 (203)
T PF13525_consen 79 DYALYMLGLSYYKQIPGIL---------RSDRDQTSTRKAIEEFEELIKRYPNSEYA--------------------EEA 129 (203)
T ss_dssp HHHHHHHHHHHHHHHHHHH----------TT---HHHHHHHHHHHHHHHH-TTSTTH--------------------HHH
T ss_pred hhHHHHHHHHHHHhCccch---------hcccChHHHHHHHHHHHHHHHHCcCchHH--------------------HHH
Confidence 7789999998877654000 00111222556777776666554432211 112
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
...+...... .+.--..+|..|...|.|..|+..++.+++..+.. .....++..++.+|..+|..+.|
T Consensus 130 ~~~l~~l~~~---------la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t---~~~~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 130 KKRLAELRNR---------LAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDT---PAAEEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp HHHHHHHHHH---------HHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTS---HHHHHHHHHHHHHHHHTT-HHHH
T ss_pred HHHHHHHHHH---------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCC---chHHHHHHHHHHHHHHhCChHHH
Confidence 1111111111 11122345555555666666666666666554432 23344555555666655555544
Q ss_pred H
Q psy10738 300 I 300 (609)
Q Consensus 300 ~ 300 (609)
.
T Consensus 198 ~ 198 (203)
T PF13525_consen 198 D 198 (203)
T ss_dssp H
T ss_pred H
Confidence 3
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.76 E-value=8.4e-07 Score=78.95 Aligned_cols=133 Identities=25% Similarity=0.253 Sum_probs=109.8
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
..+..+......++...+...++..+...|+.+- ...+.+.+|.+++..|++++|...|+.++... .++.....+.
T Consensus 13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y-a~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~ 88 (145)
T PF09976_consen 13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY-AALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLAR 88 (145)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHH
Confidence 3444555666799999999999999998887643 35578889999999999999999999988853 4456667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...|++++|+..++. ..+......++..+|.+|...|+ +++|+..|
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~--------------------~~~A~~~y 141 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGD--------------------YDEARAAY 141 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCC--------------------HHHHHHHH
Confidence 9999999999999999999865 22334567788899999999999 99999999
Q ss_pred HHHH
Q psy10738 184 EQNL 187 (609)
Q Consensus 184 ~~al 187 (609)
++++
T Consensus 142 ~~Al 145 (145)
T PF09976_consen 142 QKAL 145 (145)
T ss_pred HHhC
Confidence 9874
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.5e-08 Score=76.83 Aligned_cols=83 Identities=22% Similarity=0.416 Sum_probs=70.0
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.|+|+.|+.+++++++..|.++ ...+++.+|.+|+..|+|++|+.++++ ... .+......+.+|.++..+|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~------~~~~~~~~~l~a~~~~~l~ 72 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL------DPSNPDIHYLLARCLLKLG 72 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH------HHCHHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHHCCCCh--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC------CCCCHHHHHHHHHHHHHhC
Confidence 6899999999999999998654 244777899999999999999999999 555 4555778888899999999
Q ss_pred CHHHHHHHHHHH
Q psy10738 115 KYDEAMVCCKRH 126 (609)
Q Consensus 115 ~~~~A~~~~~~a 126 (609)
++++|+.+++++
T Consensus 73 ~y~eAi~~l~~~ 84 (84)
T PF12895_consen 73 KYEEAIKALEKA 84 (84)
T ss_dssp -HHHHHHHHHHH
T ss_pred CHHHHHHHHhcC
Confidence 999999999875
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-06 Score=80.01 Aligned_cols=103 Identities=26% Similarity=0.342 Sum_probs=68.2
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
...+..+.+++.+|..+...|++++|+.+|++++.+.+.. .....++.++|.++...|+
T Consensus 29 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~~~~la~~~~~~g~------------------ 87 (172)
T PRK02603 29 NKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDP---NDRSYILYNMGIIYASNGE------------------ 87 (172)
T ss_pred ccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcc---chHHHHHHHHHHHHHHcCC------------------
Confidence 3355667777778888877888888888888777765422 1234577777777777777
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
+++|+.++.+++.+. +.....+..+|.++...|+...+...+.+
T Consensus 88 --~~~A~~~~~~al~~~------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~ 131 (172)
T PRK02603 88 --HDKALEYYHQALELN------PKQPSALNNIAVIYHKRGEKAEEAGDQDE 131 (172)
T ss_pred --HHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCChHhHhhCHHH
Confidence 777777777777752 33345566667777776665555444433
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.3e-06 Score=77.75 Aligned_cols=123 Identities=20% Similarity=0.169 Sum_probs=98.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291 (609)
Q Consensus 212 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 291 (609)
..++...+...+++.+. ..++......+.+.+|.+++..|++++|+..|+.++... .++.....+...||.++.
T Consensus 23 ~~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l~LA~~~~ 96 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARLRLARILL 96 (145)
T ss_pred HCCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHHHHHHHHH
Confidence 46777777666665544 445555666788999999999999999999999988744 445556778889999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 347 (609)
..|++++|+..++. ..+......++..+|.+|...|++++|+..|++|+
T Consensus 97 ~~~~~d~Al~~L~~-------~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 97 QQGQYDEALATLQQ-------IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HcCCHHHHHHHHHh-------ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 99999999999855 23334456688899999999999999999999874
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.73 E-value=3.6e-05 Score=80.26 Aligned_cols=287 Identities=12% Similarity=0.099 Sum_probs=180.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH--------------------------------
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN-------------------------------- 105 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~-------------------------------- 105 (609)
..+..|..||..|...|.+++|...|++++...-...|-.....+|..
T Consensus 246 q~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~ 325 (835)
T KOG2047|consen 246 QLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMAR 325 (835)
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHH
Confidence 466788999999999999999999999998654333222211111110
Q ss_pred ---------------------------HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 106 ---------------------------LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 106 ---------------------------lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
+-.+-...|+..+-+..|.+|+.......-.......+..+|..|...|+
T Consensus 326 ~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~--- 402 (835)
T KOG2047|consen 326 FESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGD--- 402 (835)
T ss_pred HHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCc---
Confidence 00111122334444555555544322211122345678889999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE------ 232 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~------ 232 (609)
.+.|...++++.+. ..+.....+.+|.+.|..-....+++.|+.+.+.|...-..
T Consensus 403 -----------------l~~aRvifeka~~V--~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~y 463 (835)
T KOG2047|consen 403 -----------------LDDARVIFEKATKV--PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYY 463 (835)
T ss_pred -----------------HHHHHHHHHHhhcC--CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhh
Confidence 99999999998875 22334556788999999999999999999999888643221
Q ss_pred -hCChH-----HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 233 -FGDKA-----AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 233 -~~~~~-----~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.+.+. ....+|..++.+....|-++.....|++.+++--. .+....+.|..+....-+++|.+.|++.
T Consensus 464 d~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria------TPqii~NyAmfLEeh~yfeesFk~YErg 537 (835)
T KOG2047|consen 464 DNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA------TPQIIINYAMFLEEHKYFEESFKAYERG 537 (835)
T ss_pred cCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC------CHHHHHHHHHHHHhhHHHHHHHHHHHcC
Confidence 01111 11346667777777788888888888888776543 2556677777777777788888888887
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCC
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~ 377 (609)
+.+++- .........|......-..--..+.|...|++|++... +......+...|.+-..-|.-.
T Consensus 538 I~LFk~-p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cp----p~~aKtiyLlYA~lEEe~GLar 603 (835)
T KOG2047|consen 538 ISLFKW-PNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCP----PEHAKTIYLLYAKLEEEHGLAR 603 (835)
T ss_pred CccCCC-ccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCC----HHHHHHHHHHHHHHHHHhhHHH
Confidence 776642 22223333444333333334467778888888887442 2233444555555555555433
|
|
| >KOG3060|consensus | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.8e-06 Score=75.65 Aligned_cols=198 Identities=20% Similarity=0.148 Sum_probs=122.1
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcc--hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDD--LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
.-+...+.++-++++.+.+...+.. ....-.+|-.+..+....|+.+-|..++++.... .|...++...-|.
T Consensus 21 r~~~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~------fp~S~RV~~lkam 94 (289)
T KOG3060|consen 21 REETVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR------FPGSKRVGKLKAM 94 (289)
T ss_pred HhccccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh------CCCChhHHHHHHH
Confidence 4455556666666666666543211 1112335566666677777777777777776555 3445556666677
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
.+...|++++|+++|+..++-.+ ....++-..-.+...+|+ --+|++.+.+.++
T Consensus 95 ~lEa~~~~~~A~e~y~~lL~ddp------t~~v~~KRKlAilka~GK--------------------~l~aIk~ln~YL~ 148 (289)
T KOG3060|consen 95 LLEATGNYKEAIEYYESLLEDDP------TDTVIRKRKLAILKAQGK--------------------NLEAIKELNEYLD 148 (289)
T ss_pred HHHHhhchhhHHHHHHHHhccCc------chhHHHHHHHHHHHHcCC--------------------cHHHHHHHHHHHH
Confidence 77777888888888777665332 233334444445556666 5567766666665
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC---CHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG---EYQAASEHYKR 265 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~ 265 (609)
.+ .....+|..++.+|...|+|++|.-++++.+-+.|...- .+..+|.+++.+| ++.-|.+||.+
T Consensus 149 ~F------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l------~f~rlae~~Yt~gg~eN~~~arkyy~~ 216 (289)
T KOG3060|consen 149 KF------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPL------YFQRLAEVLYTQGGAENLELARKYYER 216 (289)
T ss_pred Hh------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHH------HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 53 223457777788888888888888888777766544322 4445555555554 56677778888
Q ss_pred HHHHHHH
Q psy10738 266 TLVLAQD 272 (609)
Q Consensus 266 al~~~~~ 272 (609)
++++.+.
T Consensus 217 alkl~~~ 223 (289)
T KOG3060|consen 217 ALKLNPK 223 (289)
T ss_pred HHHhChH
Confidence 8777763
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=98.72 E-value=4.9e-07 Score=82.73 Aligned_cols=113 Identities=22% Similarity=0.179 Sum_probs=78.2
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-h
Q psy10738 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-R 316 (609)
Q Consensus 238 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~ 316 (609)
..+.+++.+|.++...|++++|+..|++++.+.+. +...+.++.++|.++...|++++|+.++++++.+.+.... .
T Consensus 33 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~ 109 (168)
T CHL00033 33 KEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQAL 109 (168)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHH
Confidence 34557777888888888888888888888776432 2223557778888888888888888888888876544322 2
Q ss_pred hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 317 ~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
...+.++..+|..+..+|+++.|..++.+++..++..
T Consensus 110 ~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 110 NNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 2234445555555558888888888888888877655
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=98.72 E-value=5.7e-06 Score=80.04 Aligned_cols=188 Identities=12% Similarity=-0.062 Sum_probs=112.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....++..|..+...|+|++|+..|++.+...+ .......+.+.+|.+|+..++ |++
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP---~s~~a~~a~l~la~ayy~~~~--------------------y~~ 87 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNAD--------------------LPL 87 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCC--------------------HHH
Confidence 345566677777777777777777777766554 334555566777777777777 777
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC---------------CH---HHHHHHHHHHHHHHHHhCChHHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---------------NF---KQAIYYHQERLKIAREFGDKAAER 240 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---------------~~---~~A~~~~~~al~~~~~~~~~~~~~ 240 (609)
|+..+++.++..+. ++....+++.+|.++..++ +. .+|+..+++.++..|+. ...
T Consensus 88 A~~~~e~fi~~~P~---~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S---~ya- 160 (243)
T PRK10866 88 AQAAIDRFIRLNPT---HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNS---QYT- 160 (243)
T ss_pred HHHHHHHHHHhCcC---CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCC---hhH-
Confidence 77777777666443 3444566777776654433 22 34555555555544432 111
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
.+|...+...... .+.--..+|..|.+.|.|..|+.-++..+.-.+.. ....
T Consensus 161 ----------------~~A~~rl~~l~~~---------la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t---~~~~ 212 (243)
T PRK10866 161 ----------------TDATKRLVFLKDR---------LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDT---QATR 212 (243)
T ss_pred ----------------HHHHHHHHHHHHH---------HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCC---chHH
Confidence 1222211111111 12333466777888888888777777766654443 3356
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.++..++..|..+|..++|..+..
T Consensus 213 eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 213 DALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHH
Confidence 677888888888888887766543
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=98.70 E-value=1e-06 Score=80.86 Aligned_cols=109 Identities=19% Similarity=0.111 Sum_probs=84.2
Q ss_pred hCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 193 INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 193 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
.......+.+++++|.++...|++++|+.+|++++.+.+... ....++.++|.++...|++++|+.++.+++.+.+.
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 104 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN---DRSYILYNMGIIYASNGEHDKALEYYHQALELNPK 104 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc---hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 345667788999999999999999999999999998765432 23458999999999999999999999999998665
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHH
Q psy10738 273 LGDRAVEAQACYSLGNTYTLLRD-------YPTAIDYHLRHLIIA 310 (609)
Q Consensus 273 ~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~ 310 (609)
. ...+..+|.++...|+ ++.|+..+.++++..
T Consensus 105 ~------~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~ 143 (172)
T PRK02603 105 Q------PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYW 143 (172)
T ss_pred c------HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHH
Confidence 3 5566677878777666 444444444444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.69 E-value=3.3e-07 Score=80.16 Aligned_cols=103 Identities=15% Similarity=0.054 Sum_probs=83.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
+......+.+|..++..|++++|...|+-...+.+ .....+++||.++..+|+ |
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp------~~~~y~~gLG~~~Q~~g~--------------------~ 85 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDA------WSFDYWFRLGECCQAQKH--------------------W 85 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHHhh--------------------H
Confidence 45567778888888888888888888888877776 677788888888888888 8
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.+|+..|..++.+ .+.....+.++|.+++..|+.+.|.+.|+.++..+.
T Consensus 86 ~~AI~aY~~A~~L------~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 86 GEAIYAYGRAAQI------KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred HHHHHHHHHHHhc------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 8888888888877 344556888888888888888888888888888773
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.67 E-value=4.4e-05 Score=76.88 Aligned_cols=302 Identities=12% Similarity=-0.004 Sum_probs=156.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH----------------H
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR----------------N 92 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~----------------~ 92 (609)
+..-.+.|+..-|...|+.|++.-.++.. ...++...|..-..+.+++.|.-.|+-|++..+ +
T Consensus 214 arFE~k~g~~~~aR~VyerAie~~~~d~~-~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKq 292 (677)
T KOG1915|consen 214 ARFEEKHGNVALARSVYERAIEFLGDDEE-AEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQ 292 (677)
T ss_pred HHHHHhcCcHHHHHHHHHHHHHHhhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHH
Confidence 44445667778888888888776443322 222334444444455566666666555554322 1
Q ss_pred cCC----------------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH-HHHHHHHHHHHH
Q psy10738 93 MED----------------------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL-SEGRALYNLGNV 149 (609)
Q Consensus 93 ~~d----------------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~-~~~~~~~~lg~~ 149 (609)
.|| .+....+++..-.+-...|+.+.-.+.|++|+.-.+...... ..-.+|..+-.+
T Consensus 293 fGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYa 372 (677)
T KOG1915|consen 293 FGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYA 372 (677)
T ss_pred hcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Confidence 222 333455666666666777999999999999987666433222 222233333333
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
++.. -..++.+.+.+.|+.++++.+.. ....+.++...|.....+.+...|.+.+-.|+..
T Consensus 373 lyeE-----------------le~ed~ertr~vyq~~l~lIPHk--kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~ 433 (677)
T KOG1915|consen 373 LYEE-----------------LEAEDVERTRQVYQACLDLIPHK--KFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK 433 (677)
T ss_pred HHHH-----------------HHhhhHHHHHHHHHHHHhhcCcc--cchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc
Confidence 2221 11123888889999999876543 2334455555566555666666666665555554
Q ss_pred HHHhCC---------------------------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 230 AREFGD---------------------------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282 (609)
Q Consensus 230 ~~~~~~---------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 282 (609)
+++..- .+....++...|.+-..+|+.+.|...|+-|+.... ...+. ..
T Consensus 434 cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~-ldmpe---ll 509 (677)
T KOG1915|consen 434 CPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPA-LDMPE---LL 509 (677)
T ss_pred CCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcc-cccHH---HH
Confidence 443221 011122444555555555555555555554443211 11111 11
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH-----HcC-----------ChHHHHHHHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA-----ARG-----------NHEKALYFATKH 346 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~-----~~g-----------~~~~A~~~~~~a 346 (609)
+-..-..-...|.+++|...|++.+...+.. .++...|..-. ..| +...|...|++|
T Consensus 510 wkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-------kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferA 582 (677)
T KOG1915|consen 510 WKAYIDFEIEEGEFEKARALYERLLDRTQHV-------KVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERA 582 (677)
T ss_pred HHHhhhhhhhcchHHHHHHHHHHHHHhcccc-------hHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHH
Confidence 1112223334555555555555555443322 13333333322 344 566777777777
Q ss_pred HHHHHHcCCCchHHH
Q psy10738 347 LEISKQLGDPLGQVT 361 (609)
Q Consensus 347 l~l~~~~~~~~~~~~ 361 (609)
....++.+.......
T Consensus 583 n~~~k~~~~KeeR~~ 597 (677)
T KOG1915|consen 583 NTYLKESTPKEERLM 597 (677)
T ss_pred HHHHHhcCcHHHHHH
Confidence 777777665443333
|
|
| >KOG1915|consensus | Back alignment and domain information |
|---|
Probab=98.66 E-value=2.8e-05 Score=78.26 Aligned_cols=271 Identities=8% Similarity=0.002 Sum_probs=169.2
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
..+.+.|...|++-+-..|+ ...|...+..-...|+...|...|+.|++... +...........|..-..+.
T Consensus 187 ykeieraR~IYerfV~~HP~-----v~~wikyarFE~k~g~~~~aR~VyerAie~~~---~d~~~e~lfvaFA~fEe~qk 258 (677)
T KOG1915|consen 187 YKEIERARSIYERFVLVHPK-----VSNWIKYARFEEKHGNVALARSVYERAIEFLG---DDEEAEILFVAFAEFEERQK 258 (677)
T ss_pred hhHHHHHHHHHHHHheeccc-----HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHH
Confidence 34555566666665555554 33566667777778888888888888887643 34444445555555555666
Q ss_pred CHHHHHHHHHHHHHHHHH----------------cCCcHHHH----------------------HHHHHHHHHHHHcccc
Q psy10738 115 KYDEAMVCCKRHLEISRQ----------------LNDKLSEG----------------------RALYNLGNVYHAKGKA 156 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~----------------~~d~~~~~----------------------~~~~~lg~~~~~~g~~ 156 (609)
.++.|...|+-|++..+. .||..+.- .+++..-.+-...|+
T Consensus 259 E~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~- 337 (677)
T KOG1915|consen 259 EYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGD- 337 (677)
T ss_pred HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCC-
Confidence 677777777766654432 23322211 122222222223333
Q ss_pred cccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHHHHH
Q psy10738 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGNTY---YLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~---~~~g~~~~A~~~~~~al~~~~~ 232 (609)
-+.-.+.|++|+.-.+.... ....-.+|..+-.++ ....+.+.+.+.|+.++++.+.
T Consensus 338 -------------------~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPH 398 (677)
T KOG1915|consen 338 -------------------KDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPH 398 (677)
T ss_pred -------------------HHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCc
Confidence 56666677777654332211 122222333333333 3468899999999999998876
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..- ..+..+...|...+.+.+...|.+.+..|+-.+|+ .......-.+-.++++++.....|++.++..++
T Consensus 399 kkF--tFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe 469 (677)
T KOG1915|consen 399 KKF--TFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEFSPE 469 (677)
T ss_pred ccc--hHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH
Confidence 443 33447777888888888888998888888887775 334444445666777888888888887776655
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
...++...|.+-..+|+.+.|...|+-|+.
T Consensus 470 ------~c~~W~kyaElE~~LgdtdRaRaifelAi~ 499 (677)
T KOG1915|consen 470 ------NCYAWSKYAELETSLGDTDRARAIFELAIS 499 (677)
T ss_pred ------hhHHHHHHHHHHHHhhhHHHHHHHHHHHhc
Confidence 345777777777778888887777776654
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.64 E-value=7.6e-05 Score=81.11 Aligned_cols=261 Identities=12% Similarity=-0.061 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc---CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM---EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.....++.....+++.+|.....++....+.. ......+......|.+....|++++|+++.+.++...+..... .
T Consensus 417 Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~-~ 495 (894)
T COG2909 417 LVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYR-S 495 (894)
T ss_pred HHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccch-h
Confidence 34556777888899999999988887765542 2233456666777889999999999999999999887754433 4
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
.+.++..+|.+..-.|+ +.+|..+...+.++++..+.......+....+.+...+|+...
T Consensus 496 r~~~~sv~~~a~~~~G~--------------------~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~ 555 (894)
T COG2909 496 RIVALSVLGEAAHIRGE--------------------LTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVAR 555 (894)
T ss_pred hhhhhhhhhHHHHHhch--------------------HHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHH
Confidence 45688899999999999 9999999999999999998888888899999999999994333
Q ss_pred HHH--HHHHHHHH-HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHhC
Q psy10738 219 AIY--YHQERLKI-AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLR 294 (609)
Q Consensus 219 A~~--~~~~al~~-~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g 294 (609)
|.. .+...... .+..........++..+..++.. ++.+..-....+++......... ...+++.|+.++...|
T Consensus 556 a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~G 632 (894)
T COG2909 556 AEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRG 632 (894)
T ss_pred HHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcC
Confidence 322 22221111 11111111222334444444443 66666666666666554432222 2333468999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIAQQLM-DRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
++++|...+.+......... .....+.++.....+....||+.+|.....+.
T Consensus 633 dl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s 685 (894)
T COG2909 633 DLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKS 685 (894)
T ss_pred CHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhc
Confidence 99999999999888876653 34445556666666777889999998877763
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=98.63 E-value=7.4e-05 Score=81.20 Aligned_cols=322 Identities=14% Similarity=-0.023 Sum_probs=205.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+.-+...|...+|+.+.-.| +|+...+.++.+.|.-.+..++..--..+.+.. -.. . -...+......++
T Consensus 354 a~w~~~~g~~~eAI~hAlaA-----~d~~~aa~lle~~~~~L~~~~~lsll~~~~~~l-P~~-~---l~~~P~Lvll~aW 423 (894)
T COG2909 354 AEWFAEHGLPSEAIDHALAA-----GDPEMAADLLEQLEWQLFNGSELSLLLAWLKAL-PAE-L---LASTPRLVLLQAW 423 (894)
T ss_pred HHHHHhCCChHHHHHHHHhC-----CCHHHHHHHHHhhhhhhhcccchHHHHHHHHhC-CHH-H---HhhCchHHHHHHH
Confidence 44456678888888765443 466666667777777777776654433322211 000 0 1122344556678
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLN---DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~---d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
......++.+|..+..++....+..+ .....+......|.+....|+ +++|+++.+.
T Consensus 424 ~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~--------------------~e~a~~lar~ 483 (894)
T COG2909 424 LLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGD--------------------PEEAEDLARL 483 (894)
T ss_pred HHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCC--------------------HHHHHHHHHH
Confidence 88889999999999998887766532 223455666677888889999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++........ ...+.++..+|.+..-.|++++|..+...+.++++..........+....+.++..+|+...|...-..
T Consensus 484 al~~L~~~~~-~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~ 562 (894)
T COG2909 484 ALVQLPEAAY-RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAF 562 (894)
T ss_pred HHHhcccccc-hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9987665433 334668889999999999999999999999999999998888888889999999999944333322222
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR-VGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.....................+.++...-+++.+..-..+.+.+....... ....-++..|+.++...|+.++|.....
T Consensus 563 ~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~ 642 (894)
T COG2909 563 NLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLD 642 (894)
T ss_pred HHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 221111111111111122222333333333677766666666655443322 2222334589999999999999999999
Q ss_pred HHHHHHHHcCCC-chHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 345 KHLEISKQLGDP-LGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 345 ~al~l~~~~~~~-~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+...+....+.. .....+......+....|++..+-.
T Consensus 643 ~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~ 680 (894)
T COG2909 643 ELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAE 680 (894)
T ss_pred HHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHH
Confidence 998888766422 2223333333344445566554433
|
|
| >KOG2047|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.8e-05 Score=79.35 Aligned_cols=304 Identities=11% Similarity=0.104 Sum_probs=175.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-----c-CChhh----
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN-----M-EDKLG---- 98 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-----~-~d~~~---- 98 (609)
|..|...|+.+.|...|++|.+..-...+.++.+|...|..-....+++.|+.+.+.|...-.. . +..+.
T Consensus 394 aklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rl 473 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARL 473 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHH
Confidence 6677777788888888888877765555556777777777777777777777777777654211 0 11111
Q ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 99 --EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 99 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
...+|...+......|-++.....|++.+++-- ....+..|.|..+....- +
T Consensus 474 hrSlkiWs~y~DleEs~gtfestk~vYdriidLri------aTPqii~NyAmfLEeh~y--------------------f 527 (835)
T KOG2047|consen 474 HRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI------ATPQIIINYAMFLEEHKY--------------------F 527 (835)
T ss_pred HHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc------CCHHHHHHHHHHHHhhHH--------------------H
Confidence 234445555555666666666666776666543 334455566666666555 7
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 256 (609)
++|.+.|++.+.+++-- .....-..|.....--+.--..+.|...|++|++.++. ...-..|...|..-..-|-.
T Consensus 528 eesFk~YErgI~LFk~p-~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~~Cpp----~~aKtiyLlYA~lEEe~GLa 602 (835)
T KOG2047|consen 528 EESFKAYERGISLFKWP-NVYDIWNTYLTKFIKRYGGTKLERARDLFEQALDGCPP----EHAKTIYLLYAKLEEEHGLA 602 (835)
T ss_pred HHHHHHHHcCCccCCCc-cHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHhcCCH----HHHHHHHHHHHHHHHHhhHH
Confidence 77777777777765421 11222223333333333444678888888888886552 22223555566666666777
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh
Q psy10738 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336 (609)
Q Consensus 257 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 336 (609)
..|+..|++|-.-.+.. +......+|. ..+....| ...-...|++|++..++.. ....+...|..-..+|..
T Consensus 603 r~amsiyerat~~v~~a-~~l~myni~I--~kaae~yG-v~~TR~iYekaIe~Lp~~~----~r~mclrFAdlEtklGEi 674 (835)
T KOG2047|consen 603 RHAMSIYERATSAVKEA-QRLDMYNIYI--KKAAEIYG-VPRTREIYEKAIESLPDSK----AREMCLRFADLETKLGEI 674 (835)
T ss_pred HHHHHHHHHHHhcCCHH-HHHHHHHHHH--HHHHHHhC-CcccHHHHHHHHHhCChHH----HHHHHHHHHHHhhhhhhH
Confidence 77777777754432211 0001111111 11111112 2234566777777654422 334667788888999999
Q ss_pred HHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 337 EKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 337 ~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
+.|...|.-+-++. ++.....-+...-+.-.+-|+
T Consensus 675 dRARaIya~~sq~~----dPr~~~~fW~twk~FEvrHGn 709 (835)
T KOG2047|consen 675 DRARAIYAHGSQIC----DPRVTTEFWDTWKEFEVRHGN 709 (835)
T ss_pred HHHHHHHHhhhhcC----CCcCChHHHHHHHHHHHhcCC
Confidence 99988877666554 444444444444444455555
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.2e-06 Score=85.71 Aligned_cols=112 Identities=21% Similarity=0.187 Sum_probs=67.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.+..++..|++++|...+...+...|+++ ..+...+.++...++..+|.+.+++++.+ .|.......++|
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~L~~~~P~N~----~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~l~~~~a 381 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQPLIAAQPDNP----YYLELAGDILLEANKAKEAIERLKKALAL------DPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHhcccchHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccHHHHHHH
Confidence 35555666666666666666666666553 24455566666666666666666666666 555555666666
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
++|...|++.+|+..++..+.-.+ .....|..||..|..+|+
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p------~dp~~w~~LAqay~~~g~ 423 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDP------EDPNGWDLLAQAYAELGN 423 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCC------CCchHHHHHHHHHHHhCc
Confidence 666666666666666555444333 344456666666666665
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=6.9e-07 Score=91.86 Aligned_cols=96 Identities=18% Similarity=0.215 Sum_probs=88.5
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+...|..++..|+|++|+.+|.+++.+ .+....++.++|.+|...|++++|+..+++++.+.+ ....+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P------~~~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL------DPNNAELYADRAQANIKLGNFTEAVADANKAIELDP------SLAKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CCHHH
Confidence 456788999999999999999999998 777889999999999999999999999999999877 56778
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
++.+|.+|...|+ |++|+.+|++++.+.
T Consensus 73 ~~~lg~~~~~lg~--------------------~~eA~~~~~~al~l~ 100 (356)
T PLN03088 73 YLRKGTACMKLEE--------------------YQTAKAALEKGASLA 100 (356)
T ss_pred HHHHHHHHHHhCC--------------------HHHHHHHHHHHHHhC
Confidence 9999999999999 999999999999873
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.54 E-value=3.2e-07 Score=70.03 Aligned_cols=65 Identities=29% Similarity=0.577 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEIS 130 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~ 130 (609)
+.+|..+|.+++..|++++|+.+|.+++++ .+..+.+++++|.++..+| ++.+|+.++++++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~ 68 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD 68 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence 568999999999999999999999999999 8888999999999999999 7999999999999874
|
... |
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.4e-05 Score=72.37 Aligned_cols=242 Identities=17% Similarity=0.053 Sum_probs=156.2
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~ 121 (609)
+.-+.+.+....-.++..+..++..|..|-..|-+.-|.-.|.+++.+ .|..+.+++.+|..+...|+|+.|.+
T Consensus 47 iarlsqlL~~~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai------~P~m~~vfNyLG~Yl~~a~~fdaa~e 120 (297)
T COG4785 47 LARMSQILASRALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGNFDAAYE 120 (297)
T ss_pred HHHHHHHHHhccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc------CCCcHHHHHHHHHHHHhcccchHHHH
Confidence 344555555555455667889999999999999999999999999999 88899999999999999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC-ChHHHH
Q psy10738 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQG 200 (609)
Q Consensus 122 ~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-~~~~~~ 200 (609)
.|...+++.+ ..-.+..|.|..++.-|+ |.-|.+-+.+- ....+ |+....
T Consensus 121 aFds~~ELDp------~y~Ya~lNRgi~~YY~gR--------------------~~LAq~d~~~f---YQ~D~~DPfR~L 171 (297)
T COG4785 121 AFDSVLELDP------TYNYAHLNRGIALYYGGR--------------------YKLAQDDLLAF---YQDDPNDPFRSL 171 (297)
T ss_pred HhhhHhccCC------cchHHHhccceeeeecCc--------------------hHhhHHHHHHH---HhcCCCChHHHH
Confidence 9999999887 555688899999999999 88887766543 33332 332222
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-CcHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-DRAV 278 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~ 278 (609)
+.|.+ ...-+..+|...+.+..+ ... +.+....+-+.+|.+-. ...++++..-+.+.. -...
T Consensus 172 WLYl~-----E~k~dP~~A~tnL~qR~~---~~d~e~WG~~iV~~yLgkiS~--------e~l~~~~~a~a~~n~~~Ae~ 235 (297)
T COG4785 172 WLYLN-----EQKLDPKQAKTNLKQRAE---KSDKEQWGWNIVEFYLGKISE--------ETLMERLKADATDNTSLAEH 235 (297)
T ss_pred HHHHH-----HhhCCHHHHHHHHHHHHH---hccHhhhhHHHHHHHHhhccH--------HHHHHHHHhhccchHHHHHH
Confidence 32222 123356666655543222 211 11111122223332211 122333333222110 1123
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~ 336 (609)
...+++.+|..|...|+.++|...|+-++.. ..-+-.....+...|+.++....+.
T Consensus 236 LTEtyFYL~K~~l~~G~~~~A~~LfKLaian--nVynfVE~RyA~~EL~~l~q~~~~l 291 (297)
T COG4785 236 LTETYFYLGKYYLSLGDLDEATALFKLAVAN--NVYNFVEHRYALLELSLLGQDQDDL 291 (297)
T ss_pred HHHHHHHHHHHHhccccHHHHHHHHHHHHHH--hHHHHHHHHHHHHHHHHhccccchh
Confidence 4678899999999999999999999876643 3333334444566666665554433
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.4e-06 Score=74.26 Aligned_cols=103 Identities=18% Similarity=0.174 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..+...|++++|+..|.+++...|+++. ...+++.+|.++...|+++.|+.+++.++.... +.+....++.
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~ 80 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-APNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAPDALL 80 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCcccHHHH
Confidence 456789999999999999999999999887543 245788999999999999999999999988632 2233467899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+|.++...|++++|+.++.++++..+
T Consensus 81 ~~~~~~~~~~~~~~A~~~~~~~~~~~p 107 (119)
T TIGR02795 81 KLGMSLQELGDKEKAKATLQQVIKRYP 107 (119)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHHHCc
Confidence 999999999999999999999998866
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.52 E-value=3.7e-05 Score=78.20 Aligned_cols=152 Identities=18% Similarity=0.132 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....+.+..+..++..|+ ++.|+..+...+.. .+...+.+...+.++...|+..
T Consensus 304 ~~~aa~YG~A~~~~~~~~--------------------~d~A~~~l~~L~~~------~P~N~~~~~~~~~i~~~~nk~~ 357 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQ--------------------YDEALKLLQPLIAA------QPDNPYYLELAGDILLEANKAK 357 (484)
T ss_pred cchHHHHHHHHHHHHhcc--------------------cchHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChH
Confidence 445578888889999999 99999888874443 3344567777899999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+|.+.+++++...+... ....++|.+|+..|++.+|+..++..+.-.++ .+..|..||..|..+|+..
T Consensus 358 ~A~e~~~kal~l~P~~~------~l~~~~a~all~~g~~~eai~~L~~~~~~~p~------dp~~w~~LAqay~~~g~~~ 425 (484)
T COG4783 358 EAIERLKKALALDPNSP------LLQLNLAQALLKGGKPQEAIRILNRYLFNDPE------DPNGWDLLAQAYAELGNRA 425 (484)
T ss_pred HHHHHHHHHHhcCCCcc------HHHHHHHHHHHhcCChHHHHHHHHHHhhcCCC------CchHHHHHHHHHHHhCchH
Confidence 99999999988766543 37788999999999999999988887765554 3678888999999999877
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
+|.. ..++.|...|++++|+.++..+.+..
T Consensus 426 ~a~~-----------------------A~AE~~~~~G~~~~A~~~l~~A~~~~ 455 (484)
T COG4783 426 EALL-----------------------ARAEGYALAGRLEQAIIFLMRASQQV 455 (484)
T ss_pred HHHH-----------------------HHHHHHHhCCCHHHHHHHHHHHHHhc
Confidence 6643 34556677889999998888887755
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=80.62 Aligned_cols=125 Identities=14% Similarity=0.170 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHH-HHhCCc---chhH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHcCC-
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAA-IQAGTD---DLRT-LSAIYSQLGNAYFYLGDYQKAMQYHKQDLT-LARNMED- 95 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~a-l~~~~~---~~~~-~a~~~~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~d- 95 (609)
..+++++...|..|+|.+|.+.+... +...+. .+.. ....++++|.+++..|.|.-+..+|.+|+. ...+...
T Consensus 241 ~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g 320 (696)
T KOG2471|consen 241 MALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNG 320 (696)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 35677899999999999999987654 222222 2221 233568999999999999999999999995 3333211
Q ss_pred ----------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 96 ----------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 96 ----------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
......++++.|..|...|+.-.|.+||.++...+. ...+.|..++.+....
T Consensus 321 ~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh------~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 321 LKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH------RNPRLWLRLAECCIMA 382 (696)
T ss_pred CCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh------cCcHHHHHHHHHHHHH
Confidence 123467899999999999999999999999999988 5567888888877654
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.00027 Score=68.47 Aligned_cols=298 Identities=14% Similarity=0.103 Sum_probs=205.4
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh--CC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQA--GT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~--~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
...+.......++++++..|...+.. .+ ......-.....+|..|...|++.+-.......-.....++. ...
T Consensus 8 ~e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~K-aka 86 (411)
T KOG1463|consen 8 LERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGDAEELRDLITSLRPFLSSVSK-AKA 86 (411)
T ss_pred HHHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhh-HHH
Confidence 34566677778889999999999984 22 222334456788999999999998877777666655544432 223
Q ss_pred HHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 100 AKSSGNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 100 ~~a~~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
+.....+-. +...-+..+.-+..+..+++-+...+.....-..-..+..+|+..++ |.+
T Consensus 87 aKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~--------------------Yte 146 (411)
T KOG1463|consen 87 AKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKR--------------------YTE 146 (411)
T ss_pred HHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHH--------------------HHH
Confidence 333333333 33334566777888888888777555444455566678899999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
|+......+.-.++..|......++..-..+|+.+.+..+|...+..|...+... ..+...+..-..-|.++..-.+|.
T Consensus 147 AlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDyk 226 (411)
T KOG1463|consen 147 ALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYK 226 (411)
T ss_pred HHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccc
Confidence 9999999999999999999999999999999999999999999888877665543 334444555566677888889999
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--cCC
Q psy10738 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--RGN 335 (609)
Q Consensus 258 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~g~ 335 (609)
.|..||-+|.+-+...+++.....++-.+-.+-...+..++--..+.--..+. ... ....+....|.++.. +.+
T Consensus 227 TafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g--~~i~AmkavAeA~~nRSLkd 302 (411)
T KOG1463|consen 227 TAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAG--RDIDAMKAVAEAFGNRSLKD 302 (411)
T ss_pred hHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccC--cchHHHHHHHHHhcCCcHHH
Confidence 99999999999888877764444444444445555666665444433222111 111 134466666766653 346
Q ss_pred hHHHHHHHHHHHH
Q psy10738 336 HEKALYFATKHLE 348 (609)
Q Consensus 336 ~~~A~~~~~~al~ 348 (609)
|+.|+.-|+.-+.
T Consensus 303 F~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 303 FEKALADYKKELA 315 (411)
T ss_pred HHHHHHHhHHHHh
Confidence 6677766665443
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=98.48 E-value=2e-05 Score=73.81 Aligned_cols=241 Identities=15% Similarity=0.102 Sum_probs=176.0
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
+..+.++|+.-|++++++.++..++--.++-.+..+++.+|+|++-++.|.+.+...+..-.....-.+...+-..-...
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 34589999999999999988766666678889999999999999999999999988764321111122222333333344
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
.+.+--.++|+..++..+...+.......-..+|.+|+..|+ |.+-.+.+++.-.-++.-
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e--------------------~~kl~KIlkqLh~SCq~e 178 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGE--------------------YTKLQKILKQLHQSCQTE 178 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHH--------------------HHHHHHHHHHHHHHhccc
Confidence 556666778888888777776666666777789999999999 877776666654444322
Q ss_pred C------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 194 N------DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267 (609)
Q Consensus 194 ~------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 267 (609)
. .......+|..--..|..+.+-.+-...|++++.+-...+.+.....+.-.=|..++..|+|++|-.-|-+|.
T Consensus 179 dGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAF 258 (440)
T KOG1464|consen 179 DGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAF 258 (440)
T ss_pred cCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHH
Confidence 1 1123345666666778888888888889999999887777777666677777888999999999999998888
Q ss_pred HHHHHcCCcHH-HHHHHHHHHHHHHHhC
Q psy10738 268 VLAQDLGDRAV-EAQACYSLGNTYTLLR 294 (609)
Q Consensus 268 ~~~~~~~~~~~-~~~~~~~la~~~~~~g 294 (609)
+-..+.+.+.. ...-|..||+.+.+.|
T Consensus 259 KNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 259 KNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred hcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 88777765543 3445667788877765
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.46 E-value=1.2e-06 Score=70.49 Aligned_cols=96 Identities=30% Similarity=0.517 Sum_probs=83.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+...|..++..|++++|+..++++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 72 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNA----DAYYNLAAAYYKLGKYEEALEDYEKALEL------DPDNAKAYY 72 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH----HHHHHHHHHHHHHHHHHHHHHHHHHHHhC------CCcchhHHH
Confidence 34568889999999999999999999988764 47889999999999999999999999887 344447889
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
.+|.++...|++++|..++.+++...
T Consensus 73 ~~~~~~~~~~~~~~a~~~~~~~~~~~ 98 (100)
T cd00189 73 NLGLAYYKLGKYEEALEAYEKALELD 98 (100)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHccC
Confidence 99999999999999999999887653
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.42 E-value=2.7e-06 Score=82.96 Aligned_cols=104 Identities=13% Similarity=0.045 Sum_probs=89.0
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERL-CKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+..|..+ +..|+|++|+..|+..++..|++.. ...+++++|.+|+..|++++|+..|++++...+ +.+....++
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~~dAl 220 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcchhHHH
Confidence 34456655 5679999999999999999998643 356899999999999999999999999887743 456678999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.+|.++..+|++++|...|+++++.++.
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~ 249 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPG 249 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999887763
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=6.3e-06 Score=88.36 Aligned_cols=143 Identities=18% Similarity=0.152 Sum_probs=105.9
Q ss_pred cchhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHH----HHHHHHHHHHHH
Q psy10738 17 DGGNMCLELALEGERLCKAGD---CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ----KAMQYHKQDLTL 89 (609)
Q Consensus 17 ~~a~~~~~l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~----~A~~~~~~al~~ 89 (609)
......|.++++|..+...++ +..|+.+|++|++++|+... ++..++.+|.....+. ..+....++...
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~----a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~ 409 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTY----AQAEKALADIVRHSQQPLDEKQLAALSTELDN 409 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence 345578999999999887766 88999999999999999844 5555555554432221 122222222222
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
+......+..+.++..+|..+...|++++|...+++|+.+.+ . ..+|..+|.++...|+
T Consensus 410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p------s-~~a~~~lG~~~~~~G~-------------- 468 (517)
T PRK10153 410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM------S-WLNYVLLGKVYELKGD-------------- 468 (517)
T ss_pred hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC------C-HHHHHHHHHHHHHcCC--------------
Confidence 222222333457888889999999999999999999999874 2 4699999999999999
Q ss_pred hHhHHhHHHHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~ 190 (609)
+++|++.|++|+.+.
T Consensus 469 ------~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 469 ------NRLAADAYSTAFNLR 483 (517)
T ss_pred ------HHHHHHHHHHHHhcC
Confidence 999999999999874
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.40 E-value=0.00036 Score=66.07 Aligned_cols=228 Identities=14% Similarity=0.046 Sum_probs=168.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.|..+.+.+++++|+..|.+.+..+. .-....-.....++.+|...|++..--+.....-+....... +....+.
T Consensus 9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk-~k~~Kii 87 (421)
T COG5159 9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTK-PKITKII 87 (421)
T ss_pred HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcc-hhHHHHH
Confidence 47778899999999999999998632 112233456788999999999988776666666555444432 2233333
Q ss_pred HHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 104 GNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 104 ~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
..+-. .-.....++.-+..+...++.+.+.+........-..+..+++..|. |.+|+..
T Consensus 88 rtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~--------------------Ysdalal 147 (421)
T COG5159 88 RTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGK--------------------YSDALAL 147 (421)
T ss_pred HHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------HHHHHHH
Confidence 33322 22334667888888888888776554444445556678889999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
..-.+.-+++..|.+.....+..-..+|....+..++...+..|...+...-- +...+..-..-|..+..-.+|..|..
T Consensus 148 In~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~S 227 (421)
T COG5159 148 INPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASS 227 (421)
T ss_pred HHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHH
Confidence 99999999999999999999999999999999999999988888776665333 33344555555777788889999999
Q ss_pred HHHHHHHHHHHcCCc
Q psy10738 262 HYKRTLVLAQDLGDR 276 (609)
Q Consensus 262 ~~~~al~~~~~~~~~ 276 (609)
||-++++-+......
T Consensus 228 YF~Ea~Egft~l~~d 242 (421)
T COG5159 228 YFIEALEGFTLLKMD 242 (421)
T ss_pred HHHHHHhccccccch
Confidence 999999877665443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.38 E-value=0.00018 Score=68.23 Aligned_cols=232 Identities=26% Similarity=0.337 Sum_probs=168.2
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.+.+..+...+..++...+.. .....+...+..+...+.+..+...+...+.. .........+...|..+...+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 109 (291)
T COG0457 36 LGELAEALELLEEALELLPNS--DLAGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALG 109 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccc--cchHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHh
Confidence 467777778888877766542 11346777888888999999999988888763 115566778888899999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH-HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN-VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
++..++..+.+++...... .......+. ++...|+ ++.|...+.+++.....
T Consensus 110 ~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~~~~- 162 (291)
T COG0457 110 KYEEALELLEKALALDPDP------DLAEALLALGALYELGD--------------------YEEALELYEKALELDPE- 162 (291)
T ss_pred hHHHHHHHHHHHHcCCCCc------chHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhcCCC-
Confidence 9999999888887754422 122233333 7888888 99999999988542110
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
.......+...+..+...++++.|+..+.+++...+.. ....+..++..+...+++..|...+..++...+.
T Consensus 163 --~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~- 234 (291)
T COG0457 163 --LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD- 234 (291)
T ss_pred --ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-
Confidence 12344556666666888889999999999988877663 2237788888888888999999999888887765
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
....+..++..+...+.++++...+.+++...+.
T Consensus 235 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 235 -----NAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred -----cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 2445666677777777788888888888776554
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=98.38 E-value=3.3e-06 Score=67.27 Aligned_cols=83 Identities=29% Similarity=0.390 Sum_probs=67.1
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|+|+.|+.+++++++..+. .+ ....++.+|.+|+..|+|++|+.++++ ....+ ....+.+.+|.++..
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~---~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~------~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT---NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP------SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG---TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH------CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC---Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC------CCHHHHHHHHHHHHH
Confidence 68999999999999998332 11 566788899999999999999999998 54444 345677788999999
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+|+ |++|+..++++
T Consensus 71 l~~--------------------y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGK--------------------YEEAIKALEKA 84 (84)
T ss_dssp TT---------------------HHHHHHHHHHH
T ss_pred hCC--------------------HHHHHHHHhcC
Confidence 999 99999999875
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00037 Score=73.65 Aligned_cols=288 Identities=16% Similarity=0.169 Sum_probs=159.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH------HHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQD------LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---- 129 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l---- 129 (609)
...|-.-|.+|-...++++|+++|++. +++++- .-+......--..|..+...|+++.|+.+|-++-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielarf-afp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARF-AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHh-hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 456677788888899999999998764 444332 223344455556688888889999998887654332
Q ss_pred ---------------HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 130 ---------------SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 130 ---------------~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
...+.|.......|-.++.-|...|++..++.....++...++...|.++-+ ++.+.++..+..
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~k-w~da~kla~e~~ 818 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAGK-WEDAFKLAEECH 818 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhcccc-HHHHHHHHHHhc
Confidence 2223333333334556677777777722111111111222222222222211 122344444444
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHhCChH------------HHHHHHHHHHHHHHHhCCH
Q psy10738 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYH------QERLKIAREFGDKA------------AERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~------~~al~~~~~~~~~~------------~~~~~~~~la~~~~~~g~~ 256 (609)
.+......|...+.-.-..|+|.+|...| .+++.++.+.+-.. ........+|.-|...|+.
T Consensus 819 ~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~l 898 (1636)
T KOG3616|consen 819 GPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDL 898 (1636)
T ss_pred CchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccCh
Confidence 45556667777777777888888877665 45566655543221 2233566777778888888
Q ss_pred HHHHHHHHHHHHH-------------------HHHcCCcHHHHHHHHH---------HHHHHHHhCCHHHHHHHHH----
Q psy10738 257 QAASEHYKRTLVL-------------------AQDLGDRAVEAQACYS---------LGNTYTLLRDYPTAIDYHL---- 304 (609)
Q Consensus 257 ~~A~~~~~~al~~-------------------~~~~~~~~~~~~~~~~---------la~~~~~~g~~~~A~~~~~---- 304 (609)
..|...|.++-+. ++..+.....-.+.+. -..++-+.|-.+.|+.+.-
T Consensus 899 kaae~~flea~d~kaavnmyk~s~lw~dayriaktegg~n~~k~v~flwaksiggdaavkllnk~gll~~~id~a~d~~a 978 (1636)
T KOG3616|consen 899 KAAEEHFLEAGDFKAAVNMYKASELWEDAYRIAKTEGGANAEKHVAFLWAKSIGGDAAVKLLNKHGLLEAAIDFAADNCA 978 (1636)
T ss_pred hHHHHHHHhhhhHHHHHHHhhhhhhHHHHHHHHhccccccHHHHHHHHHHHhhCcHHHHHHHHhhhhHHHHhhhhhcccc
Confidence 8887776554332 2211111111111111 0112233444455544322
Q ss_pred --HHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 305 --RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 305 --~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
-+..+++ ++.......++..++..+...|++++|-.+|-+++.+.
T Consensus 979 fd~afdlar-i~~k~k~~~vhlk~a~~ledegk~edaskhyveaikln 1025 (1636)
T KOG3616|consen 979 FDFAFDLAR-IAAKDKMGEVHLKLAMFLEDEGKFEDASKHYVEAIKLN 1025 (1636)
T ss_pred hhhHHHHHH-HhhhccCccchhHHhhhhhhccchhhhhHhhHHHhhcc
Confidence 1222221 22233445678889999999999999999999888753
|
|
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.4e-06 Score=83.91 Aligned_cols=116 Identities=21% Similarity=0.210 Sum_probs=95.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCC----cc-------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGT----DD-------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~----~~-------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
.|..+++.|+|..|...|++|+..-. .+ ......++.+++.+|..+++|..|+.++.++|.+ .
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~------~ 287 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL------D 287 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc------C
Confidence 49999999999999999999988532 11 1234568899999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+....+++..|.++..+|+|+.|+..|++++++.|.. -.+...|..+.....+
T Consensus 288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~N------ka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSN------KAARAELIKLKQKIRE 340 (397)
T ss_pred CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998832 3344445444444333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.36 E-value=7.2e-07 Score=88.49 Aligned_cols=253 Identities=13% Similarity=0.030 Sum_probs=156.2
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
....++..|+|..++.-++ ....++ .........+.++|..+|+++..+.-... . ......+...++
T Consensus 7 ~vrn~fy~G~Y~~~i~e~~-~~~~~~---~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~-------~--~~~~l~av~~la 73 (290)
T PF04733_consen 7 TVRNQFYLGNYQQCINEAS-LKSFSP---ENKLERDFYQYRSYIALGQYDSVLSEIKK-------S--SSPELQAVRLLA 73 (290)
T ss_dssp HHHHHHCTT-HHHHCHHHH-CHTSTC---HHHHHHHHHHHHHHHHTT-HHHHHHHS-T-------T--SSCCCHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhh-ccCCCc---hhHHHHHHHHHHHHHHcCChhHHHHHhcc-------C--CChhHHHHHHHH
Confidence 3567788999999998777 222222 23355677788899999998766543211 1 122234455556
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcH--HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKL--SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~--~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
..+...++-+.++.-++..+ .+.. .........|.++...|+ +++|+..+.+
T Consensus 74 ~y~~~~~~~e~~l~~l~~~~------~~~~~~~~~~~~~~~A~i~~~~~~--------------------~~~AL~~l~~ 127 (290)
T PF04733_consen 74 EYLSSPSDKESALEELKELL------ADQAGESNEIVQLLAATILFHEGD--------------------YEEALKLLHK 127 (290)
T ss_dssp HHHCTSTTHHCHHHHHHHCC------CTS---CHHHHHHHHHHHHCCCCH--------------------HHHHHCCCTT
T ss_pred HHHhCccchHHHHHHHHHHH------HhccccccHHHHHHHHHHHHHcCC--------------------HHHHHHHHHc
Confidence 55554444444444333221 1111 123455667788888898 9999887765
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--CHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG--EYQAASEHY 263 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~ 263 (609)
. +. ..+......+|..+++++.|.+.++...++ .+.... +....+++.+..| .+.+|...|
T Consensus 128 ~-------~~----lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~----~eD~~l--~qLa~awv~l~~g~e~~~~A~y~f 190 (290)
T PF04733_consen 128 G-------GS----LELLALAVQILLKMNRPDLAEKELKNMQQI----DEDSIL--TQLAEAWVNLATGGEKYQDAFYIF 190 (290)
T ss_dssp T-------TC----HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC----SCCHHH--HHHHHHHHHHHHTTTCCCHHHHHH
T ss_pred c-------Cc----ccHHHHHHHHHHHcCCHHHHHHHHHHHHhc----CCcHHH--HHHHHHHHHHHhCchhHHHHHHHH
Confidence 3 11 234455677899999999999888775433 332222 2233334444455 688999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh-HHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH-EKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~-~~A~~~ 342 (609)
++..+.... ....+..+|.++..+|+|++|...+.+++... .....++.+++.+...+|+. +.+.++
T Consensus 191 ~El~~~~~~------t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~------~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 191 EELSDKFGS------TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD------PNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp HHHHCCS--------SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred HHHHhccCC------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc------cCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 885443322 35678899999999999999999999987533 23466888999999999998 555556
Q ss_pred HHHHHH
Q psy10738 343 ATKHLE 348 (609)
Q Consensus 343 ~~~al~ 348 (609)
..+...
T Consensus 259 l~qL~~ 264 (290)
T PF04733_consen 259 LSQLKQ 264 (290)
T ss_dssp HHHCHH
T ss_pred HHHHHH
Confidence 555433
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=98.36 E-value=2.6e-06 Score=68.52 Aligned_cols=96 Identities=38% Similarity=0.629 Sum_probs=83.4
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+. ...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALEL------DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPD------NAK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCc------chh
Confidence 5788999999999999999999999887 4444578999999999999999999999999887652 236
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
++..+|.++...|+ +++|..++.+++..
T Consensus 70 ~~~~~~~~~~~~~~--------------------~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGK--------------------YEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHh--------------------HHHHHHHHHHHHcc
Confidence 88899999999999 99999999887764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=98.35 E-value=5.8e-06 Score=70.47 Aligned_cols=104 Identities=19% Similarity=0.164 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.+++.+|..+...|++++|+..+.+++... .+.+....+++.+|.++...|++++|+.++++++...+. .....
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPK---SPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCC---CCccc
Confidence 478999999999999999999999998762 223444678999999999999999999999999987652 22345
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.++..+|.++...|+ +++|+.++.+++...
T Consensus 77 ~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 77 DALLKLGMSLQELGD--------------------KEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHHHHHHHhCC--------------------hHHHHHHHHHHHHHC
Confidence 678999999999999 999999999988874
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00084 Score=66.39 Aligned_cols=269 Identities=14% Similarity=0.044 Sum_probs=176.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
-..+.+......|+|+.|.+-|+..+. +++....-+..|-.-....|..+.|+.|.+.+... .+....+.
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~------Ap~l~WA~ 191 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEK------APQLPWAA 191 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhh------ccCCchHH
Confidence 345567788888999999988888764 44433333333334445678899999998888887 44455555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
...-......|+++.|++..+.......-..+.....++-..-+.......- +...|....
T Consensus 192 ~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~lda-------------------dp~~Ar~~A 252 (531)
T COG3898 192 RATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDA-------------------DPASARDDA 252 (531)
T ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcC-------------------ChHHHHHHH
Confidence 5555666788999999998887665433222222222222222222222221 156777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
.+++++ .+....+-..-+..++..|+..++-..++.+.+..+. -.++.+|....--+.++.-+
T Consensus 253 ~~a~KL------~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePH-----------P~ia~lY~~ar~gdta~dRl 315 (531)
T COG3898 253 LEANKL------APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPH-----------PDIALLYVRARSGDTALDRL 315 (531)
T ss_pred HHHhhc------CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCC-----------hHHHHHHHHhcCCCcHHHHH
Confidence 777776 3444455666788899999999998888877664321 12455555555555666777
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc-CChHHHHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR-GNHEKALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~A~~~ 342 (609)
+++-.+..-..+ ........+...+.-|++..|..-.+.+..+.+. ..++..|+.+-... |+-.++..+
T Consensus 316 kRa~~L~slk~n---naes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-------es~~lLlAdIeeAetGDqg~vR~w 385 (531)
T COG3898 316 KRAKKLESLKPN---NAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-------ESAYLLLADIEEAETGDQGKVRQW 385 (531)
T ss_pred HHHHHHHhcCcc---chHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-------hhHHHHHHHHHhhccCchHHHHHH
Confidence 776655432222 3566677888888999999998888877776654 45788888888766 888888888
Q ss_pred HHHHHH
Q psy10738 343 ATKHLE 348 (609)
Q Consensus 343 ~~~al~ 348 (609)
+-+++.
T Consensus 386 lAqav~ 391 (531)
T COG3898 386 LAQAVK 391 (531)
T ss_pred HHHHhc
Confidence 777765
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.8e-06 Score=65.80 Aligned_cols=63 Identities=38% Similarity=0.701 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC-CHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG-NFKQA 219 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A 219 (609)
.++..+|.++...|+ |++|+.+|.+++++ .+....++.++|.+|..+| ++++|
T Consensus 4 ~~~~~~g~~~~~~~~--------------------~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A 57 (69)
T PF13414_consen 4 EAWYNLGQIYFQQGD--------------------YEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEA 57 (69)
T ss_dssp HHHHHHHHHHHHTTH--------------------HHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHH
T ss_pred HHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHH
Confidence 455566666666666 66666666666655 3334456666666666666 46666
Q ss_pred HHHHHHHHHH
Q psy10738 220 IYYHQERLKI 229 (609)
Q Consensus 220 ~~~~~~al~~ 229 (609)
+.++++++++
T Consensus 58 ~~~~~~al~l 67 (69)
T PF13414_consen 58 IEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHc
Confidence 6666666554
|
... |
| >KOG0543|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=5.5e-06 Score=82.48 Aligned_cols=109 Identities=22% Similarity=0.225 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA 270 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 270 (609)
+.....-|+.|++.|+|..|...|++++........ ......++.|++.+|.++++|.+|+....++|.+.
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~ 287 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD 287 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence 344556799999999999999999999988763211 12235589999999999999999999999999987
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
+.+ ..+++..|.++..+|+|+.|+..|++++++.+...
T Consensus 288 ~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nk 325 (397)
T KOG0543|consen 288 PNN------VKALYRRGQALLALGEYDLARDDFQKALKLEPSNK 325 (397)
T ss_pred CCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcH
Confidence 764 78999999999999999999999999999987643
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00011 Score=69.33 Aligned_cols=190 Identities=18% Similarity=0.123 Sum_probs=124.8
Q ss_pred hHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 20 NMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 20 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
.....++.+|...+..|+|++|+..|+.+....|..+-. ..+...++.+++..++++.|+.+.++-+.+... ++..
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~---~~n~ 107 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPT---HPNA 107 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCC---CCCh
Confidence 356788889999999999999999999999998876654 668899999999999999999999998887544 5667
Q ss_pred HHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 100 AKSSGNLGNTLKVM-----GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 100 ~~a~~~lg~~~~~~-----g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
..+++..|.++... .+...+...+...-++..+..+......+...
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~----------------------------- 158 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKAR----------------------------- 158 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHH-----------------------------
Confidence 77888888886543 22222333333222233322232222111111
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+.++. ...+.--..+|..|.+.|.+..|+..+++.++-.+.. .....++..+..+|..+|
T Consensus 159 -----i~~~~------------d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lg 218 (254)
T COG4105 159 -----IVKLN------------DALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALG 218 (254)
T ss_pred -----HHHHH------------HHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhC
Confidence 11111 1112233456777888888888888877777664433 233346777777777788
Q ss_pred CHHHHHHH
Q psy10738 255 EYQAASEH 262 (609)
Q Consensus 255 ~~~~A~~~ 262 (609)
-.++|...
T Consensus 219 l~~~a~~~ 226 (254)
T COG4105 219 LTDEAKKT 226 (254)
T ss_pred ChHHHHHH
Confidence 77777543
|
|
| >KOG1464|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=7.7e-05 Score=69.96 Aligned_cols=240 Identities=10% Similarity=0.048 Sum_probs=149.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
..+.++|+..|++++++-.+- ...-..++-.+-.+++.+|+|++-++.|.+.+...+..-.....-...+.+-..-..
T Consensus 40 e~~p~~Al~sF~kVlelEgEK--geWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiSt 117 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEK--GEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYIST 117 (440)
T ss_pred ccCHHHHHHHHHHHHhccccc--chhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhh
Confidence 348899999999999984332 233467888899999999999999999999988766432111111112222111112
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
..+ .+--..+|+..++..+...+..........+|.+|+..|+|.+-.+.+++.-..++.
T Consensus 118 S~~--------------------m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 118 SKN--------------------MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred hhh--------------------hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 222 444556666666666665555444556677899999988888877777776655544
Q ss_pred hCCh------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 233 FGDK------AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 233 ~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.... .....+|..-..+|..+.+-..-...|++++.+-.....+.....+...=|..+...|++++|-.-|-+|
T Consensus 178 edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEA 257 (440)
T KOG1464|consen 178 EDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEA 257 (440)
T ss_pred ccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHH
Confidence 2111 1123345555566667777777777777777776666555555555555566677777777777776666
Q ss_pred HHHHHHhcchh-hHHHHHHHHHHHHHHcC
Q psy10738 307 LIIAQQLMDRV-GEGRACWSLGNAHAARG 334 (609)
Q Consensus 307 l~~~~~~~~~~-~~~~~~~~La~~~~~~g 334 (609)
.+-..+.+.+. ....-|..||+.+.+.|
T Consensus 258 FKNYDEsGspRRttCLKYLVLANMLmkS~ 286 (440)
T KOG1464|consen 258 FKNYDESGSPRRTTCLKYLVLANMLMKSG 286 (440)
T ss_pred HhcccccCCcchhHHHHHHHHHHHHHHcC
Confidence 66655555432 23334555666665554
|
|
| >KOG3616|consensus | Back alignment and domain information |
|---|
Probab=98.30 E-value=0.0024 Score=67.83 Aligned_cols=187 Identities=16% Similarity=0.225 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKR------HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~------al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
...|-..|.+|....++++|++||++ ++++++ ..-+......--..|.-+...|+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaielar-fafp~evv~lee~wg~hl~~~~q------------------ 721 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELAR-FAFPEEVVKLEEAWGDHLEQIGQ------------------ 721 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHH-hhCcHHHhhHHHHHhHHHHHHHh------------------
Confidence 45566677788888889999998875 444443 22223333344445556666666
Q ss_pred HhHHHHHHHHHH-------------------HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH------HH
Q psy10738 174 VCLQEAIKYYEQ-------------------NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER------LK 228 (609)
Q Consensus 174 ~~~~~A~~~~~~-------------------al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a------l~ 228 (609)
++.|+.+|-+ ++.+...+.+.......|..++.-|...|+|+-|.+.|.++ +.
T Consensus 722 --~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~ 799 (1636)
T KOG3616|consen 722 --LDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAID 799 (1636)
T ss_pred --HHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHH
Confidence 5555555443 34444444444444556777888888889998888877554 22
Q ss_pred H-------------HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH------HHHHHHHHHcCC------------cH
Q psy10738 229 I-------------AREFGDKAAERRANSNLGNSHIFLGEYQAASEHY------KRTLVLAQDLGD------------RA 277 (609)
Q Consensus 229 ~-------------~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~------~~al~~~~~~~~------------~~ 277 (609)
+ ..+...+......|...+.-+-..|+|.+|...| .+++.+..+.+- ..
T Consensus 800 my~k~~kw~da~kla~e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d 879 (1636)
T KOG3616|consen 800 MYGKAGKWEDAFKLAEECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGD 879 (1636)
T ss_pred HHhccccHHHHHHHHHHhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChh
Confidence 2 2222223333344555555555666666665554 344444443321 11
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 278 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
....+...+|.-|...|+...|...|.++-
T Consensus 880 ~l~dt~~~f~~e~e~~g~lkaae~~flea~ 909 (1636)
T KOG3616|consen 880 HLHDTHKHFAKELEAEGDLKAAEEHFLEAG 909 (1636)
T ss_pred hhhHHHHHHHHHHHhccChhHHHHHHHhhh
Confidence 223445566666667777777766666554
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.30 E-value=2.3e-05 Score=80.06 Aligned_cols=164 Identities=15% Similarity=0.072 Sum_probs=125.2
Q ss_pred HHH--HHHHHHHHHHhcCC---hHHHHHHHHHHH---HhCCcchhHHHHHHHHHHHHHHHh---------CCHHHHHHHH
Q psy10738 21 MCL--ELALEGERLCKAGD---CRAGVAFFQAAI---QAGTDDLRTLSAIYSQLGNAYFYL---------GDYQKAMQYH 83 (609)
Q Consensus 21 ~~~--~l~~~g~~~~~~g~---~~~A~~~~~~al---~~~~~~~~~~a~~~~~lg~~~~~~---------g~~~~A~~~~ 83 (609)
..+ .++++|...+..+. .+.|..+|.+|+ .++|+. +.+|..++.+++.. .+..+|....
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~----a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A 327 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLK----TECYCLLAECHMSLALHGKSELELAAQKALELL 327 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCccc----HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 445 67888888876664 567999999999 667664 55788888887764 2345677777
Q ss_pred HHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCC
Q psy10738 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQ 163 (609)
Q Consensus 84 ~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~ 163 (609)
++|+++ .+..+.++..+|.++...|+++.|...|++|+.+.+ ..+.+++..|.+....|+
T Consensus 328 ~rAvel------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~P------n~A~~~~~~~~~~~~~G~-------- 387 (458)
T PRK11906 328 DYVSDI------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHST------DIASLYYYRALVHFHNEK-------- 387 (458)
T ss_pred HHHHhc------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCC------ccHHHHHHHHHHHHHcCC--------
Confidence 788877 888899999999999999999999999999999988 788899999999999999
Q ss_pred CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE 225 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 225 (609)
.++|.+.+++++++. +...+.....+-.-.+.-.-.+.|+..|-+
T Consensus 388 ------------~~~a~~~i~~alrLs-----P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 388 ------------IEEARICIDKSLQLE-----PRRRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred ------------HHHHHHHHHHHhccC-----chhhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 999999999999883 222222223333312334556777776644
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00096 Score=71.19 Aligned_cols=299 Identities=13% Similarity=0.065 Sum_probs=171.4
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED------------ 95 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d------------ 95 (609)
+|..++-.+++++|.++++.--...|-..-..+.+.+.-|..-+...+.+.|.+.+.++...+.....
T Consensus 2 ~a~~lflnn~~~eAe~~l~~~~~~s~~h~lg~~~i~fl~A~ltfe~~~~~~A~~~l~~a~~~~~~~~k~~~~~~~~~~~~ 81 (468)
T PF10300_consen 2 KAIDLFLNNRFKEAEELLSPRADESPYHALGYGVIAFLKAMLTFEPEDIEEALEALKEAESLANKFRKKASKVSKKSNIS 81 (468)
T ss_pred hHHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHhhccccccccccc
Confidence 46778889999999999986533333222233334444444445566888999999888887763210
Q ss_pred ---hh-------hHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcC---------------------
Q psy10738 96 ---KL-------GEAKSSGNLGNTLKVMGK----------YDEAMVCCKRHLEISRQLN--------------------- 134 (609)
Q Consensus 96 ---~~-------~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~~~~~--------------------- 134 (609)
.+ -.+++....|.+....+. ...|...|++..+......
T Consensus 82 ~~~~~~~~~~el~~AE~~L~~Ail~~~~es~~~~iKg~~~lRkay~~y~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (468)
T PF10300_consen 82 NSIYPEELHAELCYAEALLLKAILTFLSESLVSFIKGGYKLRKAYKIYKECMKIIEKLKKKAKSSSPGEPDSHDSWDDDS 161 (468)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCCCCCccccccccccc
Confidence 00 123444445555554444 2344455555544444221
Q ss_pred ----CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh---------HHhHHHHHHHHHHHHHHHHHhCChHH-HH
Q psy10738 135 ----DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV---------KVCLQEAIKYYEQNLALMKEINDTAA-QG 200 (609)
Q Consensus 135 ----d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~---------~~~~~~A~~~~~~al~~~~~~~~~~~-~~ 200 (609)
+......++...|.......- +|+.. .-+-+.++..+.++.+ ...+..+.. ..
T Consensus 162 ~~~~d~~~~sgv~~G~G~f~L~lSl------------LPp~~~kll~~vGF~gdR~~GL~~L~~~~~-~~~i~~~la~L~ 228 (468)
T PF10300_consen 162 TKPIDEFFESGVYFGFGLFNLVLSL------------LPPKVLKLLSFVGFSGDRELGLRLLWEASK-SENIRSPLAALV 228 (468)
T ss_pred cchhHHHHHHhHHHHHHHHHHHHHh------------CCHHHHHHHhhcCcCCcHHHHHHHHHHHhc-cCCcchHHHHHH
Confidence 001122233333332222111 00000 0014566666665543 111111111 01
Q ss_pred -HHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 201 -RACGNLGNTYY----LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 201 -~~~~~lg~~~~----~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
..|+.....+. ...+.+.|.+.+......+|+.. ..+...|.++...|+.++|++.|++++......
T Consensus 229 LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s~------lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~-- 300 (468)
T PF10300_consen 229 LLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNSA------LFLFFEGRLERLKGNLEEAIESFERAIESQSEW-- 300 (468)
T ss_pred HHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--
Confidence 11111111111 23355667777777666655433 267788999999999999999999988533332
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCCh-------HHHHHHHHHHHH
Q psy10738 276 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH-------EKALYFATKHLE 348 (609)
Q Consensus 276 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~-------~~A~~~~~~al~ 348 (609)
+.....+++.+|.++..+++|++|..++.+..+. +.+..+...+..|-++...|+. ++|..++.++-.
T Consensus 301 ~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 301 KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 2345678899999999999999999999887763 2344666778889999999999 666666666666
Q ss_pred HHHH
Q psy10738 349 ISKQ 352 (609)
Q Consensus 349 l~~~ 352 (609)
+..+
T Consensus 376 l~~k 379 (468)
T PF10300_consen 376 LKQK 379 (468)
T ss_pred HHhh
Confidence 6544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.0026 Score=63.00 Aligned_cols=291 Identities=17% Similarity=0.065 Sum_probs=197.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.-.|.+....||-..|.+.-.++-++-..|.+ ..++..-+..-...|+++.|.+-|+..+.- +.....-+..
T Consensus 88 LStGliAagAGda~lARkmt~~~~~llssDqe--pLIhlLeAQaal~eG~~~~Ar~kfeAMl~d------PEtRllGLRg 159 (531)
T COG3898 88 LSTGLIAAGAGDASLARKMTARASKLLSSDQE--PLIHLLEAQAALLEGDYEDARKKFEAMLDD------PETRLLGLRG 159 (531)
T ss_pred HhhhhhhhccCchHHHHHHHHHHHhhhhccch--HHHHHHHHHHHHhcCchHHHHHHHHHHhcC------hHHHHHhHHH
Confidence 33478888889999999999988766554544 335566677778889999999999887664 4443334444
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
|-.-....|..+.|..|.+++....+ ....+....-...+..|+ ++.|++..+.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap------~l~WA~~AtLe~r~~~gd--------------------Wd~AlkLvd~ 213 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAP------QLPWAARATLEARCAAGD--------------------WDGALKLVDA 213 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhcc------CCchHHHHHHHHHHhcCC--------------------hHHHHHHHHH
Confidence 44445678999999999999998888 334455555556677899 9999999887
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYY-LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 264 (609)
......-..+......+-..-+.... ...+...|.....++.++.+.... +-..-+..++..|+..++-..++
T Consensus 214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL~pdlvP------aav~AAralf~d~~~rKg~~ilE 287 (531)
T COG3898 214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKLAPDLVP------AAVVAARALFRDGNLRKGSKILE 287 (531)
T ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCccch------HHHHHHHHHHhccchhhhhhHHH
Confidence 66543222222222222222222222 234678888888888888777655 55667889999999999998888
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 265 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
.+-+..+. -.++.+|....--+.++.-++++-.+..- +..........++....-|++..|..-.+
T Consensus 288 ~aWK~ePH-----------P~ia~lY~~ar~gdta~dRlkRa~~L~sl---k~nnaes~~~va~aAlda~e~~~ARa~Ae 353 (531)
T COG3898 288 TAWKAEPH-----------PDIALLYVRARSGDTALDRLKRAKKLESL---KPNNAESSLAVAEAALDAGEFSAARAKAE 353 (531)
T ss_pred HHHhcCCC-----------hHHHHHHHHhcCCCcHHHHHHHHHHHHhc---CccchHHHHHHHHHHHhccchHHHHHHHH
Confidence 77654432 12445555554555666667766555432 23356678888999999999999998887
Q ss_pred HHHHHHHHcCCCchHHHHHHHHHHHHHHc-CCCC
Q psy10738 345 KHLEISKQLGDPLGQVTAQMNVTDLRKAL-GMST 377 (609)
Q Consensus 345 ~al~l~~~~~~~~~~~~a~~~la~l~~~~-g~~~ 377 (609)
.+..+. ....++..|+++-... |+..
T Consensus 354 aa~r~~-------pres~~lLlAdIeeAetGDqg 380 (531)
T COG3898 354 AAAREA-------PRESAYLLLADIEEAETGDQG 380 (531)
T ss_pred HHhhhC-------chhhHHHHHHHHHhhccCchH
Confidence 777654 3345666777776655 5543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.26 E-value=4e-06 Score=63.07 Aligned_cols=59 Identities=25% Similarity=0.475 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
..|..++..|++++|+..|+++++..|++. .+++.+|.++..+|++++|+.+|+++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~----~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNP----EAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHH----HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 357888888999999999999988888764 48888888988889999999888888876
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-05 Score=70.73 Aligned_cols=103 Identities=24% Similarity=0.318 Sum_probs=92.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
.+-.+|.-++..|+|.+|..-|..||...|. .....+.+|.+.|.+...++.++.|+..+.+++++ .+....+
T Consensus 97 ~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------~pty~kA 170 (271)
T KOG4234|consen 97 SLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------NPTYEKA 170 (271)
T ss_pred HHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc------CchhHHH
Confidence 4445699999999999999999999999875 34556778899999999999999999999999999 8888899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...|.+|..+.+|++|+.-|.+.++..+.
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 999999999999999999999999998773
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.9e-05 Score=65.70 Aligned_cols=100 Identities=20% Similarity=0.166 Sum_probs=83.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
.+..|..+-..|+.++|+.+|++++..+.... ....++..+|..+..+|++++|+..+++++.. ..+.+....+..
T Consensus 4 ~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~-~~~~a~i~lastlr~LG~~deA~~~L~~~~~~---~p~~~~~~~l~~ 79 (120)
T PF12688_consen 4 LYELAWAHDSLGREEEAIPLYRRALAAGLSGA-DRRRALIQLASTLRNLGRYDEALALLEEALEE---FPDDELNAALRV 79 (120)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCch-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCccccHHHHH
Confidence 35568899999999999999999999876544 35678999999999999999999999998764 233344666777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
.++.++...|++++|+..+..++.
T Consensus 80 f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 889999999999999999987764
|
|
| >KOG2471|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=7.8e-05 Score=75.38 Aligned_cols=314 Identities=12% Similarity=0.012 Sum_probs=187.7
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHc-------
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA-YFYLGDYQKAMQYHKQDLTLARNM------- 93 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~------- 93 (609)
-+.+...+...+..+.|+...++++..-.++..+.. ++++.+.+ |+..|.+.. ....+....+-...
T Consensus 17 ~~~l~~~a~~~f~~~~~d~cl~~l~~l~t~~~~~~~----v~~n~av~~~~kt~~tq~-~~ll~el~aL~~~~~~~~~~~ 91 (696)
T KOG2471|consen 17 NYSLLCQAHEQFNNSEFDRCLELLQELETRGESSGP----VLHNRAVVSYYKTGCTQH-SVLLKELEALTADADAPGDVS 91 (696)
T ss_pred hHHHHHHHHhccCCcchHHHHHHHHHHHhccccccc----eeeehhhHHHHhcccchh-HHHHHHHHHHHHhhccccchh
Confidence 355666677888999999999999998888766533 33444444 444444322 22233222221111
Q ss_pred --CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchH
Q psy10738 94 --EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 94 --~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~ 171 (609)
-+.......+++.|.+|+....+..|+..........+....... +......-.++....+
T Consensus 92 ~gld~~~~t~~~yn~aVi~yh~~~~g~a~~~~~~lv~r~e~le~~~a-a~v~~l~~~l~~~t~q---------------- 154 (696)
T KOG2471|consen 92 SGLSLKQGTVMDYNFAVIFYHHEENGSAMQLSSNLVSRTESLESSSA-ASVTLLSDLLAAETSQ---------------- 154 (696)
T ss_pred cchhhhcchHHhhhhheeeeeHhhcchHHHhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH----------------
Confidence 112223567888999999999999999887776655543332211 2222333344444444
Q ss_pred hHHhHHHHHHHHHHHHHHHHHh-----CCh-----------HHH-----------HHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEI-----NDT-----------AAQ-----------GRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~-----~~~-----------~~~-----------~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
.++|+.+..-.-++.... ++. +.. ..+.......|..+.+...+..-.+
T Consensus 155 ----~e~al~~l~vL~~~~~~~~~~~~gn~~~~nn~~kt~s~~aAe~s~~~a~~k~~~~~ykVr~llq~~~Lk~~krevK 230 (696)
T KOG2471|consen 155 ----CEEALDYLNVLAEIEAEKRMKLVGNHIPANNLLKTLSPSAAERSFSTADLKLELQLYKVRFLLQTRNLKLAKREVK 230 (696)
T ss_pred ----HHHHHHHHHHHHHHHHhhhccccccccchhhhcccCCcchhcccchhhccchhhhHhhHHHHHHHHHHHHHHHhhh
Confidence 566665544322222111 100 000 0111122222333344444444444
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----cHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD----RAVEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 225 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
-++.++... ..+....+..++..|++.+|.+.+...- +....+. .-.....+.++|.+++.+|.|.-+.
T Consensus 231 ~vmn~a~~s------~~~l~LKsq~eY~~gn~~kA~KlL~~sn-i~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~ 303 (696)
T KOG2471|consen 231 HVMNIAQDS------SMALLLKSQLEYAHGNHPKAMKLLLVSN-IHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASS 303 (696)
T ss_pred hhhhhcCCC------cHHHHHHHHHHHHhcchHHHHHHHHhcc-cccccCccccchhhhheeecCcceEeeehhhHHHHH
Confidence 443333321 2366777888999999999988775432 2222221 1123456689999999999999999
Q ss_pred HHHHHHHH-HHHHhcc-----------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy10738 301 DYHLRHLI-IAQQLMD-----------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTD 368 (609)
Q Consensus 301 ~~~~~al~-~~~~~~~-----------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~ 368 (609)
.+|.+|++ ....+.. ......++++.|..|...|++..|.++|.++...+ ....+.|..||+
T Consensus 304 ~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf------h~nPrlWLRlAE 377 (696)
T KOG2471|consen 304 VLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF------HRNPRLWLRLAE 377 (696)
T ss_pred HHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH------hcCcHHHHHHHH
Confidence 99999996 4444322 12345688999999999999999999999999999 445678888998
Q ss_pred HHHHcC
Q psy10738 369 LRKALG 374 (609)
Q Consensus 369 l~~~~g 374 (609)
++....
T Consensus 378 cCima~ 383 (696)
T KOG2471|consen 378 CCIMAL 383 (696)
T ss_pred HHHHHh
Confidence 886543
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.24 E-value=6.8e-05 Score=68.13 Aligned_cols=234 Identities=16% Similarity=0.035 Sum_probs=145.8
Q ss_pred CCCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 14 GGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 14 g~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
++......+.-++.+|..|-..|-..-|.--|.+++.+.|+- +.+++.+|..+...|+|+.|.+.|...+++
T Consensus 57 ~~l~~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m----~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 57 RALTDEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM----PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred ccCChHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc----HHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 344444555566778999999999999999999999999986 458999999999999999999999999999
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
+|..-.+..+.|..++.-|+|.-|.+-+.+...-.+ .|+..... +|....+.
T Consensus 129 --Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~--~DPfR~LW-------LYl~E~k~----------------- 180 (297)
T COG4785 129 --DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDP--NDPFRSLW-------LYLNEQKL----------------- 180 (297)
T ss_pred --CCcchHHHhccceeeeecCchHhhHHHHHHHHhcCC--CChHHHHH-------HHHHHhhC-----------------
Confidence 888888999999999999999999988776554333 22222111 12211110
Q ss_pred HhHHHHHHHHHH-HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHH
Q psy10738 174 VCLQEAIKYYEQ-NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHI 251 (609)
Q Consensus 174 ~~~~~A~~~~~~-al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~ 251 (609)
+..+|...+.+ +....+ +......+-+. +|+..+ ...++++...+.+... ......+|+.+|..+.
T Consensus 181 -dP~~A~tnL~qR~~~~d~---e~WG~~iV~~y-------LgkiS~-e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l 248 (297)
T COG4785 181 -DPKQAKTNLKQRAEKSDK---EQWGWNIVEFY-------LGKISE-ETLMERLKADATDNTSLAEHLTETYFYLGKYYL 248 (297)
T ss_pred -CHHHHHHHHHHHHHhccH---hhhhHHHHHHH-------HhhccH-HHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh
Confidence 14555443322 222110 11111111222 233221 1223333332221110 1223458999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
..|+.++|...|+-++...- -+-...-.+...++.++....+..
T Consensus 249 ~~G~~~~A~~LfKLaiannV--ynfVE~RyA~~EL~~l~q~~~~l~ 292 (297)
T COG4785 249 SLGDLDEATALFKLAVANNV--YNFVEHRYALLELSLLGQDQDDLA 292 (297)
T ss_pred ccccHHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHhccccchhh
Confidence 99999999999987765321 111222345555665555444333
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.23 E-value=0.00045 Score=65.42 Aligned_cols=205 Identities=27% Similarity=0.371 Sum_probs=157.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQA--GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
.....+..+...+++..++..+..++.. .+. ....+...|..+...+++..++..+..++... .....
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~ 130 (291)
T COG0457 61 LLLLLALALLKLGRLEEALELLEKALELELLPN----LAEALLNLGLLLEALGKYEEALELLEKALALD------PDPDL 130 (291)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc----hHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCC------CCcch
Confidence 4445678889999999999999999873 333 35578889999999999999999999988762 22223
Q ss_pred HHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 102 SSGNLGN-TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 102 a~~~lg~-~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.....+. ++...|+++.|..++.+++...+. .......+...+..+...++ ++.|+
T Consensus 131 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------------------~~~a~ 187 (291)
T COG0457 131 AEALLALGALYELGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGR--------------------YEEAL 187 (291)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcC--------------------HHHHH
Confidence 3334444 899999999999999999553221 12345566666666888888 99999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
..+.+++...... ....+..++..+...++++.|+..+.+++...+. ....+..++..+...+.++.+.
T Consensus 188 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~ 256 (291)
T COG0457 188 ELLEKALKLNPDD-----DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD------NAEALYNLALLLLELGRYEEAL 256 (291)
T ss_pred HHHHHHHhhCccc-----chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc------cHHHHhhHHHHHHHcCCHHHHH
Confidence 9999998874332 4567889999999999999999999999988765 2235666777777777899999
Q ss_pred HHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQD 272 (609)
Q Consensus 261 ~~~~~al~~~~~ 272 (609)
..+.+++...+.
T Consensus 257 ~~~~~~~~~~~~ 268 (291)
T COG0457 257 EALEKALELDPD 268 (291)
T ss_pred HHHHHHHHhCcc
Confidence 999998887664
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=98.23 E-value=3.9e-05 Score=82.35 Aligned_cols=149 Identities=15% Similarity=0.040 Sum_probs=103.5
Q ss_pred hCCcchhHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH----HHHHHH
Q psy10738 51 AGTDDLRTLSAIYSQLGNAYFYLGD---YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD----EAMVCC 123 (609)
Q Consensus 51 ~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~----~A~~~~ 123 (609)
..|.++. +.-++..|..|...++ +..|+.+|++|+++ +|..+.++..++.+|.....+. ..+...
T Consensus 332 ~~~~~~~--Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a 403 (517)
T PRK10153 332 GLPHQGA--ALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS------EPDFTYAQAEKALADIVRHSQQPLDEKQLAAL 403 (517)
T ss_pred cCCCCHH--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHH
Confidence 3455555 4456667777766554 78999999999999 8888999988888876653332 112222
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q psy10738 124 KRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203 (609)
Q Consensus 124 ~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 203 (609)
.++...............++..+|..+...|+ +++|..++++|+.+. + ...+|
T Consensus 404 ~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~--------------------~~~A~~~l~rAl~L~------p-s~~a~ 456 (517)
T PRK10153 404 STELDNIVALPELNVLPRIYEILAVQALVKGK--------------------TDEAYQAINKAIDLE------M-SWLNY 456 (517)
T ss_pred HHHHHHhhhcccCcCChHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcC------C-CHHHH
Confidence 22222222221112234677788888888888 999999999988873 2 25688
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 204 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
..+|.++...|++++|++.|++|+.+.+...
T Consensus 457 ~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 457 VLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 8899999999999999999999988876544
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=98.23 E-value=2.9e-05 Score=65.74 Aligned_cols=102 Identities=27% Similarity=0.273 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
.+++++|.++-..|+ .++|+.+|++++... -+......++..+|..+..+|++++|+
T Consensus 2 ~~~~~~A~a~d~~G~--------------------~~~Ai~~Y~~Al~~g---L~~~~~~~a~i~lastlr~LG~~deA~ 58 (120)
T PF12688_consen 2 RALYELAWAHDSLGR--------------------EEEAIPLYRRALAAG---LSGADRRRALIQLASTLRNLGRYDEAL 58 (120)
T ss_pred chHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHcC---CCchHHHHHHHHHHHHHHHcCCHHHHH
Confidence 467888888888888 888888888887741 123445678888888888899999998
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
..+++++.-.+. ......+...++.++...|++++|+..+-.++.
T Consensus 59 ~~L~~~~~~~p~---~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 59 ALLEEALEEFPD---DELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHCCC---ccccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 888888764332 222233556677788888888888888766553
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=6.3e-05 Score=62.59 Aligned_cols=103 Identities=20% Similarity=0.276 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
..++-++|..+...|+.+.|++.|.+++.+.|.. +.+|++.+..+..+|+.++|+..++++++++... ......
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r----aSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPER----ASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc----hHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3456667999999999999999999999999987 4599999999999999999999999999995432 445678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
++...|.+|..+|+-+.|..-|+.+-++-
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 89999999999999999999999887654
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=98.17 E-value=3e-05 Score=75.65 Aligned_cols=103 Identities=14% Similarity=0.044 Sum_probs=77.0
Q ss_pred HHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 242 ANSNLGNSH-IFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 242 ~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
..+..|..+ ...|+|++|+..|++.+...++. .....+++.+|.+|+..|++++|+.+|++++...+. .....
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~---s~~~~ 217 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPK---SPKAA 217 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC---Ccchh
Confidence 445555554 45688888888888888777653 223567788888888888888888888888766554 34466
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+++.+|.++..+|++++|..+|++.++.+
T Consensus 218 dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 218 DAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 688888888888888888888888877765
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.00081 Score=76.25 Aligned_cols=224 Identities=10% Similarity=0.007 Sum_probs=164.3
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDE 118 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~ 118 (609)
.+..+-|++.+.-+|+.. -.|...-..+...++.++|.+.+++||....-. .......+|..+-++...-|.-+.
T Consensus 1441 pesaeDferlvrssPNSS----i~WI~YMaf~LelsEiekAR~iaerAL~tIN~R-EeeEKLNiWiA~lNlEn~yG~ees 1515 (1710)
T KOG1070|consen 1441 PESAEDFERLVRSSPNSS----ILWIRYMAFHLELSEIEKARKIAERALKTINFR-EEEEKLNIWIAYLNLENAYGTEES 1515 (1710)
T ss_pred CcCHHHHHHHHhcCCCcc----hHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcc-hhHHHHHHHHHHHhHHHhhCcHHH
Confidence 344566777777788763 345555556677899999999999998764100 012223333333333444466667
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 119 AMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 119 A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
-.+.|++|.+++. ...+|..|.-+|...++ +++|.++++..++-+. .
T Consensus 1516 l~kVFeRAcqycd-------~~~V~~~L~~iy~k~ek--------------------~~~A~ell~~m~KKF~------q 1562 (1710)
T KOG1070|consen 1516 LKKVFERACQYCD-------AYTVHLKLLGIYEKSEK--------------------NDEADELLRLMLKKFG------Q 1562 (1710)
T ss_pred HHHHHHHHHHhcc-------hHHHHHHHHHHHHHhhc--------------------chhHHHHHHHHHHHhc------c
Confidence 7778888877764 23478888999999999 9999999998877654 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
...+|...|..++...+-+.|...+.+|+...++... .......|.+.++.|+.+.+...|+..+..+|+.
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----v~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKR----- 1633 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----VEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKR----- 1633 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----HHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccc-----
Confidence 3457888899999999999999999999998887322 2356678889999999999999999988887764
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
...|..+...-.+.|+.+.+...|++++.+.
T Consensus 1634 -tDlW~VYid~eik~~~~~~vR~lfeRvi~l~ 1664 (1710)
T KOG1070|consen 1634 -TDLWSVYIDMEIKHGDIKYVRDLFERVIELK 1664 (1710)
T ss_pred -hhHHHHHHHHHHccCCHHHHHHHHHHHHhcC
Confidence 4566677777888899999999999988653
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=3.1e-05 Score=68.16 Aligned_cols=96 Identities=17% Similarity=0.071 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|++++|..+|+-..-.++.+++ .+..||.++..+++|++|+..|..+..+ ....+..
T Consensus 38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~----Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l------~~~dp~p 107 (165)
T PRK15331 38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD----YTMGLAAVCQLKKQFQKACDLYAVAFTL------LKNDYRP 107 (165)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHc------ccCCCCc
Confidence 34556689999999999999999999999998855 6899999999999999999999999887 3444556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
.+..|.||..+|+...|..+|+.+++
T Consensus 108 ~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 108 VFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred cchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 88999999999999999999999887
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=98.16 E-value=1.8e-05 Score=75.29 Aligned_cols=103 Identities=22% Similarity=0.255 Sum_probs=92.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..+++.|+|..|...|..-++..|++.. .+.++++||.+++.+|+|+.|...|..+.. ..++.+...++++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApdall 219 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDALL 219 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHHHH
Confidence 566789999999999999999999999997654 577999999999999999999999988766 4555777889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+|.+...+|+.++|...++++++-++
T Consensus 220 Klg~~~~~l~~~d~A~atl~qv~k~YP 246 (262)
T COG1729 220 KLGVSLGRLGNTDEACATLQQVIKRYP 246 (262)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999988776
|
|
| >KOG1070|consensus | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.00073 Score=76.59 Aligned_cols=197 Identities=10% Similarity=0.030 Sum_probs=159.1
Q ss_pred HHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.....++.++|.+.+++||.. ++...+....+|..+-+....-|.-+...+.|++|.+.+ ....+|..|..+
T Consensus 1467 f~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc-------d~~~V~~~L~~i 1539 (1710)
T KOG1070|consen 1467 FHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC-------DAYTVHLKLLGI 1539 (1710)
T ss_pred HHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc-------chHHHHHHHHHH
Confidence 456778999999999999974 454444444556555555555677777788888887763 235678899999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|...+++++|.++++..++-+. ....+|..+|..+....+ -+.|...+.+|++.
T Consensus 1540 y~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne--------------------~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1540 YEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNE--------------------AEAARELLKRALKS 1593 (1710)
T ss_pred HHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccH--------------------HHHHHHHHHHHHhh
Confidence 9999999999999999888776 456688899999999888 88999999999988
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.++. .........|.+-+..|+.+.+...|+..+..+|+-.| .|..+...-...|+.+.+...|++++.+
T Consensus 1594 lPk~----eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtD------lW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1594 LPKQ----EHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTD------LWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred cchh----hhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchh------HHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence 7652 23456677788999999999999999999998888777 7888888888999999999999998875
Q ss_pred H
Q psy10738 270 A 270 (609)
Q Consensus 270 ~ 270 (609)
.
T Consensus 1664 ~ 1664 (1710)
T KOG1070|consen 1664 K 1664 (1710)
T ss_pred C
Confidence 4
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=98.13 E-value=9.8e-05 Score=75.58 Aligned_cols=147 Identities=11% Similarity=0.051 Sum_probs=115.2
Q ss_pred HHHhCCcch---hHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHH---HHHHHcCChhhHHHHHHHHHHHHHHc-----
Q psy10738 48 AIQAGTDDL---RTLSAIYSQLGNAYFYLGD---YQKAMQYHKQDL---TLARNMEDKLGEAKSSGNLGNTLKVM----- 113 (609)
Q Consensus 48 al~~~~~~~---~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al---~~~~~~~d~~~~~~a~~~lg~~~~~~----- 113 (609)
+....|.+. ..+..-++..|...+..+. .+.|+.+|.+++ ++ +|..+.+|..++.++...
T Consensus 240 ~~r~~~~~l~~~~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~l------dp~~a~a~~~lA~~h~~~~~~g~ 313 (458)
T PRK11906 240 SVRLAKQDQGYKNHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDI------QTLKTECYCLLAECHMSLALHGK 313 (458)
T ss_pred hhcCCCCCcccccchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccC------CcccHHHHHHHHHHHHHHHHhcC
Confidence 344445554 3222244677777766654 467888888888 66 788899999999988765
Q ss_pred ----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 114 ----GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 114 ----g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
....+|.....+|+++.+ ..+.++..+|.+....|+ ++.|...|++|+.+
T Consensus 314 ~~~~~~~~~a~~~A~rAveld~------~Da~a~~~~g~~~~~~~~--------------------~~~a~~~f~rA~~L 367 (458)
T PRK11906 314 SELELAAQKALELLDYVSDITT------VDGKILAIMGLITGLSGQ--------------------AKVSHILFEQAKIH 367 (458)
T ss_pred CCchHHHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHhhcc--------------------hhhHHHHHHHHhhc
Confidence 224567777777777766 667899999999999999 99999999999998
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.+..+.+++..|.+....|+.++|.+++++++++.|.
T Consensus 368 ------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~ 404 (458)
T PRK11906 368 ------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR 404 (458)
T ss_pred ------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch
Confidence 6778889999999999999999999999999988654
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=98.11 E-value=6.3e-06 Score=61.95 Aligned_cols=62 Identities=31% Similarity=0.445 Sum_probs=56.8
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.+|..++..|++++|+..|++++.. .|....+++.+|.++..+|++++|+.+|++++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P 62 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALELDP 62 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 35789999999999999999999988 788999999999999999999999999999998765
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.09 E-value=6.9e-05 Score=76.98 Aligned_cols=117 Identities=16% Similarity=0.243 Sum_probs=102.3
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
..+...++++.|+.+|++..+..|+ +...++.++...++..+|+..+.+++.. .+..+..+...+..
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~~pe-------v~~~LA~v~l~~~~E~~AI~ll~~aL~~------~p~d~~LL~~Qa~f 243 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRERDPE-------VAVLLARVYLLMNEEVEAIRLLNEALKE------NPQDSELLNLQAEF 243 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhcCCc-------HHHHHHHHHHhcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 3445568999999999999988875 4566889999999999999999999966 56668889999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+...++++.|+.+.+++..+.| .....|+.|+.+|...|+ ++.|+..+..
T Consensus 244 Ll~k~~~~lAL~iAk~av~lsP------~~f~~W~~La~~Yi~~~d--------------------~e~ALlaLNs 293 (395)
T PF09295_consen 244 LLSKKKYELALEIAKKAVELSP------SEFETWYQLAECYIQLGD--------------------FENALLALNS 293 (395)
T ss_pred HHhcCCHHHHHHHHHHHHHhCc------hhHHHHHHHHHHHHhcCC--------------------HHHHHHHHhc
Confidence 9999999999999999999988 778899999999999999 9999876653
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00096 Score=63.09 Aligned_cols=194 Identities=16% Similarity=0.124 Sum_probs=134.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..++.-|......|++++|+..|+.... +....+..-.+...++.+++..+++++|+...++-+.+.+... ..
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~---~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~---n~ 107 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDS---RHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHP---NA 107 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH---cCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCC---Ch
Confidence 45788899999999999999999998764 3444566688999999999999999999999999988877544 56
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+++..|.++...=+ ...++...+...+...-.+..+..+..-...+...+-
T Consensus 108 dY~~YlkgLs~~~~i~---------------~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~------------ 160 (254)
T COG4105 108 DYAYYLKGLSYFFQID---------------DVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIV------------ 160 (254)
T ss_pred hHHHHHHHHHHhccCC---------------ccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHH------------
Confidence 6788888888665433 1111234444444444444444444433322222211
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
.++..+ +.--..+|..|.+.|.+..|+..++..++-.+.. ...-.++..+..+|..+|-.++|
T Consensus 161 --~~~d~L------------A~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t---~~~~eaL~~l~eaY~~lgl~~~a 223 (254)
T COG4105 161 --KLNDAL------------AGHEMAIARYYLKRGAYVAAINRFEEVLENYPDT---SAVREALARLEEAYYALGLTDEA 223 (254)
T ss_pred --HHHHHH------------HHHHHHHHHHHHHhcChHHHHHHHHHHHhccccc---cchHHHHHHHHHHHHHhCChHHH
Confidence 111111 1133467899999999999999999888765543 34566788889999999999988
Q ss_pred HHHH
Q psy10738 300 IDYH 303 (609)
Q Consensus 300 ~~~~ 303 (609)
...-
T Consensus 224 ~~~~ 227 (254)
T COG4105 224 KKTA 227 (254)
T ss_pred HHHH
Confidence 7643
|
|
| >KOG1463|consensus | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.0014 Score=63.73 Aligned_cols=250 Identities=14% Similarity=0.109 Sum_probs=172.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
..+.......++++++..+...+......... ...-....++|.+|...|+ +.+-.
T Consensus 9 e~~~~~~~~~~~~~~~~il~~vl~~~~~~~s~e~~i~~kE~~Ilel~~ll~~~~~--------------------~~~lr 68 (411)
T KOG1463|consen 9 ERAQNLVSVNQVEEAINILKSVLNKAQGASSDEARIKEKEQSILELGDLLAKEGD--------------------AEELR 68 (411)
T ss_pred HHHHHhcccchhhhhHHHHHHHhhhhccccCCHHHHHHHHHHHHHHHHHHHhccc--------------------hhHHH
Confidence 33444455566677777777776642211111 1234567789999999999 55555
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNL-GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
.........+...+... .+.....+ -.+...-+..+.-+..+.++++.+............-..+..+|...++|.+|
T Consensus 69 ~li~~~Rpf~~~v~Kak-aaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLRq~Learli~Ly~d~~~YteA 147 (411)
T KOG1463|consen 69 DLITSLRPFLSSVSKAK-AAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLRQSLEARLIRLYNDTKRYTEA 147 (411)
T ss_pred HHHHHHHHHHHHhhhHH-HHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhHHHHHH
Confidence 55444444433332221 12222222 22333345566778888888888877665555555667789999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
+......+.-.++..+......++..-..+|....+..+|...+..|-..+...-- +...+..-..-|.+|..-.+|.-
T Consensus 148 laL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lDLqSGIlha~ekDykT 227 (411)
T KOG1463|consen 148 LALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLDLQSGILHAAEKDYKT 227 (411)
T ss_pred HHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHHHhccceeecccccch
Confidence 99999999999999988888888888899999999999999998888776655433 33444455555778888899999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
|..||-+|.+-+..+++......++..+--+-..++.
T Consensus 228 afSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~ 264 (411)
T KOG1463|consen 228 AFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNL 264 (411)
T ss_pred HHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcC
Confidence 9999999999999999876666665555444444444
|
|
| >KOG4234|consensus | Back alignment and domain information |
|---|
Probab=98.05 E-value=6.9e-05 Score=67.20 Aligned_cols=107 Identities=18% Similarity=0.190 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
+..+-.-|+-++..|+|++|..-|..|+.+++.... .....+|.+.|.+.++++.++.|+..+.+++++.+..
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty------ 167 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTY------ 167 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchh------
Confidence 445566788899999999999999999999987654 4556789999999999999999999999999998874
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
..++...|.+|.++..|++|++-|.+.+++.+..
T Consensus 168 ~kAl~RRAeayek~ek~eealeDyKki~E~dPs~ 201 (271)
T KOG4234|consen 168 EKALERRAEAYEKMEKYEEALEDYKKILESDPSR 201 (271)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcch
Confidence 5677788999999999999999999999887653
|
|
| >KOG4555|consensus | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.00018 Score=60.03 Aligned_cols=102 Identities=20% Similarity=0.142 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
.+-.-|......|+.+.|++.|.+++.++++... +|+|.+..+..+|+.++|++-+++++++.... ......
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------ayNNRAQa~RLq~~~e~ALdDLn~AleLag~~--trtacq 116 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERAS------AYNNRAQALRLQGDDEEALDDLNKALELAGDQ--TRTACQ 116 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------hhccHHHHHHHcCChHHHHHHHHHHHHhcCcc--chHHHH
Confidence 3445577778889999999999999999887665 99999999999999999999999999987543 334567
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
++...|.+|..+|+-+.|..-|+.+-++-.
T Consensus 117 a~vQRg~lyRl~g~dd~AR~DFe~AA~LGS 146 (175)
T KOG4555|consen 117 AFVQRGLLYRLLGNDDAARADFEAAAQLGS 146 (175)
T ss_pred HHHHHHHHHHHhCchHHHHHhHHHHHHhCC
Confidence 888999999999999999999998876643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=98.03 E-value=1.7e-05 Score=60.15 Aligned_cols=66 Identities=21% Similarity=0.312 Sum_probs=53.3
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
++..|++++|+..|++++...|++.. ++..+|.+|...|++++|...+++++.. .+....++..++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~g~~~~A~~~l~~~~~~------~~~~~~~~~l~a 66 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE----ARLLLAQCYLKQGQYDEAEELLERLLKQ------DPDNPEYQQLLA 66 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH----HHHHHHHHHHHTT-HHHHHHHHHCCHGG------GTTHHHHHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCHHHHHHHHh
Confidence 35789999999999999999998855 7889999999999999999999998877 444455554444
|
... |
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=2.8e-05 Score=75.14 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=90.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+-.+|..|+++|.|++||.+|.+++...|.++. .+.+.+.+|+.+..|..|...+..|+.+ +.....+|.
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV----~~~NRA~AYlk~K~FA~AE~DC~~AiaL------d~~Y~KAYS 169 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV----YHINRALAYLKQKSFAQAEEDCEAAIAL------DKLYVKAYS 169 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccCCCCcc----chhhHHHHHHHHHHHHHHHHhHHHHHHh------hHHHHHHHH
Confidence 344599999999999999999999999997754 6788999999999999999999999999 788899999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
..|..-..+|+..+|.+-|+.++.+-+.
T Consensus 170 RR~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 170 RRMQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 9999999999999999999999998774
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00013 Score=70.28 Aligned_cols=120 Identities=22% Similarity=0.226 Sum_probs=104.4
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK- 115 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~- 115 (609)
..+.-+.-++.-+..+|+|.+ -|..||.+|+.+|++..|...|.+|+.+ .+..+..+..+|.+++.+.+
T Consensus 137 ~~~~l~a~Le~~L~~nP~d~e----gW~~Lg~~ym~~~~~~~A~~AY~~A~rL------~g~n~~~~~g~aeaL~~~a~~ 206 (287)
T COG4235 137 EMEALIARLETHLQQNPGDAE----GWDLLGRAYMALGRASDALLAYRNALRL------AGDNPEILLGLAEALYYQAGQ 206 (287)
T ss_pred cHHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcchhHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcCC
Confidence 366777888888889999855 7899999999999999999999999999 77778888888988877643
Q ss_pred --HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH
Q psy10738 116 --YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192 (609)
Q Consensus 116 --~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 192 (609)
-.++...+++++...+ ...++.+.||..++..|+ |.+|+..++..++....
T Consensus 207 ~~ta~a~~ll~~al~~D~------~~iral~lLA~~afe~g~--------------------~~~A~~~Wq~lL~~lp~ 259 (287)
T COG4235 207 QMTAKARALLRQALALDP------ANIRALSLLAFAAFEQGD--------------------YAEAAAAWQMLLDLLPA 259 (287)
T ss_pred cccHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhcCCC
Confidence 5678999999998877 778899999999999999 99999999998887544
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0015 Score=61.43 Aligned_cols=142 Identities=17% Similarity=0.178 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+.+.+..++.-.|.|.-.+..+.+.++.. ++........+|.+-...|+ .+.|.
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-----~e~~p~L~s~Lgr~~MQ~GD--------------------~k~a~ 232 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYY-----PEQEPQLLSGLGRISMQIGD--------------------IKTAE 232 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhC-----CcccHHHHHHHHHHHHhccc--------------------HHHHH
Confidence 355667777777888888888888777733 22445566678888888888 77788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.+++..-+....+........+..+.+.+|...++|..|...+.+++...+.... +.++.|.|....|+...|+
T Consensus 233 ~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~------a~NnKALcllYlg~l~DAi 306 (366)
T KOG2796|consen 233 KYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV------ANNNKALCLLYLGKLKDAL 306 (366)
T ss_pred HHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchh------hhchHHHHHHHHHHHHHHH
Confidence 8887766666555555555667778888888888888888888777665443332 6677788888888888888
Q ss_pred HHHHHHHHHHHHc
Q psy10738 261 EHYKRTLVLAQDL 273 (609)
Q Consensus 261 ~~~~~al~~~~~~ 273 (609)
+.++.++...|..
T Consensus 307 K~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 307 KQLEAMVQQDPRH 319 (366)
T ss_pred HHHHHHhccCCcc
Confidence 8888877766643
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.95 E-value=0.00011 Score=75.55 Aligned_cols=117 Identities=13% Similarity=0.088 Sum_probs=96.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
-.++...++++.|+..+++..+.. ++ +...++.++...++..+|+..+.+++...+.. +..+...
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~~---pe------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Q 240 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRERD---PE------VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQ 240 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhcC---Cc------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHH
Confidence 344556788999999999866543 22 55668999999999999999999999654432 7778888
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+..+...++++.|+...+++..+.+. ....|..|+.+|..+|+++.|+..++
T Consensus 241 a~fLl~k~~~~lAL~iAk~av~lsP~------~f~~W~~La~~Yi~~~d~e~ALlaLN 292 (395)
T PF09295_consen 241 AEFLLSKKKYELALEIAKKAVELSPS------EFETWYQLAECYIQLGDFENALLALN 292 (395)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhCch------hHHHHHHHHHHHHhcCCHHHHHHHHh
Confidence 99999999999999999999998876 56699999999999999999986644
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.0013 Score=62.04 Aligned_cols=149 Identities=13% Similarity=0.040 Sum_probs=103.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
....-|.+|..-|++++|+........+- +...--.++.++.+++-|...+++..++..+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE-----------~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~-------- 170 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLE-----------AAALNVQILLKMHRFDLAEKELKKMQQIDEDA-------- 170 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------
Confidence 44555788899999999998887743321 22333457778888888888888887776542
Q ss_pred HHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCc
Q psy10738 282 ACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357 (609)
Q Consensus 282 ~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 357 (609)
++..||..|... +.+..|.-+|++.-.- ..........++.++..+|++++|...++.++.-. .
T Consensus 171 tLtQLA~awv~la~ggek~qdAfyifeE~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd------~ 238 (299)
T KOG3081|consen 171 TLTQLAQAWVKLATGGEKIQDAFYIFEELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD------A 238 (299)
T ss_pred HHHHHHHHHHHHhccchhhhhHHHHHHHHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc------C
Confidence 445565555432 3455565555543321 22345578889999999999999999999998744 4
Q ss_pred hHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 358 GQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 358 ~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
...+++.++.-+-..+|.+.....
T Consensus 239 ~dpetL~Nliv~a~~~Gkd~~~~~ 262 (299)
T KOG3081|consen 239 KDPETLANLIVLALHLGKDAEVTE 262 (299)
T ss_pred CCHHHHHHHHHHHHHhCCChHHHH
Confidence 557888888888888998755443
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-06 Score=81.86 Aligned_cols=156 Identities=19% Similarity=0.140 Sum_probs=74.0
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
...|.++...|++++|+..+.+. ...++......+|..+++++.|.+.++.+.+ ..+. ...+.
T Consensus 106 ~~~A~i~~~~~~~~~AL~~l~~~-----------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD--~~l~q 168 (290)
T PF04733_consen 106 LLAATILFHEGDYEEALKLLHKG-----------GSLELLALAVQILLKMNRPDLAEKELKNMQQ----IDED--SILTQ 168 (290)
T ss_dssp HHHHHHHCCCCHHHHHHCCCTTT-----------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC--HHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHcc-----------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc--HHHHH
Confidence 34455555566666666655432 1223344455566666666666665554322 2221 11122
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
...+++....|. +.+.+|...|++.... . .....+++.++.++..+|+|++|...+
T Consensus 169 La~awv~l~~g~------------------e~~~~A~y~f~El~~~---~---~~t~~~lng~A~~~l~~~~~~eAe~~L 224 (290)
T PF04733_consen 169 LAEAWVNLATGG------------------EKYQDAFYIFEELSDK---F---GSTPKLLNGLAVCHLQLGHYEEAEELL 224 (290)
T ss_dssp HHHHHHHHHHTT------------------TCCCHHHHHHHHHHCC---S-----SHHHHHHHHHHHHHCT-HHHHHHHH
T ss_pred HHHHHHHHHhCc------------------hhHHHHHHHHHHHHhc---c---CCCHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 222333333332 0055666666553221 1 122345566666666677777776666
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH-HHHHHHHHHH
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGEY-QAASEHYKRT 266 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~-~~A~~~~~~a 266 (609)
++++...+.. ..++.|++.+....|+. +.+.+++.+.
T Consensus 225 ~~al~~~~~~------~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 225 EEALEKDPND------PDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHCCC-CCH------HHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHhccCC------HHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6665432221 22556666666666666 3344444443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.013 Score=58.24 Aligned_cols=98 Identities=14% Similarity=0.196 Sum_probs=76.9
Q ss_pred HHhcCChHHHHHHHHHHHHh----CCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHH---c-C----Chhh
Q psy10738 32 LCKAGDCRAGVAFFQAAIQA----GTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARN---M-E----DKLG 98 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~----~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~---~-~----d~~~ 98 (609)
..+.|+++.|..++.++-.. .|+....++..+++.|......+ +++.|..++++++++... . . ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999998664 45666778999999999999999 999999999999999644 1 1 1245
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
...++..++.+|...+.++...+ +.++++..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l 113 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLL 113 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHH
Confidence 67888999999999998765544 34444444
|
It is also involved in sporulation []. |
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.92 E-value=6.2e-05 Score=69.44 Aligned_cols=109 Identities=17% Similarity=0.169 Sum_probs=96.9
Q ss_pred cchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 17 DGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 17 ~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
.+...+..+-..|..++....|..|+..|.+||.++|.. +..|.+.+.+|+...+++.+.....+++++ .
T Consensus 5 ~~s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~----~~Y~tnralchlk~~~~~~v~~dcrralql------~ 74 (284)
T KOG4642|consen 5 EMSESAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV----ASYYTNRALCHLKLKHWEPVEEDCRRALQL------D 74 (284)
T ss_pred ccchHHHHHHhccccccchhhhchHHHHHHHHHhcCCCc----chhhhhHHHHHHHhhhhhhhhhhHHHHHhc------C
Confidence 344445566667999999999999999999999999976 347889999999999999999999999999 8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d 135 (609)
++.+.+++.+|........|++|+..+.++..+.+...-
T Consensus 75 ~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 75 PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999886543
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.00018 Score=69.42 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=93.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
+|..++-|..||.+|..+|++..|...|.+|+++.+ .....+..+|.+++...+. .+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g------~n~~~~~g~aeaL~~~a~~-----------------~~ 208 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAG------DNPEILLGLAEALYYQAGQ-----------------QM 208 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCC-----------------cc
Confidence 777889999999999999999999999999999987 5566777888877766541 12
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (609)
-.++...+++++.. .+...++.+.||..++..|+|.+|+..++..++..+....
T Consensus 209 ta~a~~ll~~al~~------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 209 TAKARALLRQALAL------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred cHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 57888888888887 6677889999999999999999999999999988776544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.031 Score=55.49 Aligned_cols=250 Identities=14% Similarity=0.060 Sum_probs=140.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHH---cC-----CcHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEISRQ---LN-----DKLS 138 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~~---~~-----d~~~ 138 (609)
....|+++.|..++.++-...... ......+..+++.|......+ +++.|..+++++.++... .. ....
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 356899999999999998876421 123456889999999999999 999999999999999744 11 1135
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH-HHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM-KEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
...++..++.+|...+. ++...+ ...+++.. .+.++++.... ..+ .+....++.+
T Consensus 83 r~~iL~~La~~~l~~~~--------------------~~~~~k-a~~~l~~l~~e~~~~~~~~~--L~l-~il~~~~~~~ 138 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDT--------------------YESVEK-ALNALRLLESEYGNKPEVFL--LKL-EILLKSFDEE 138 (278)
T ss_pred HHHHHHHHHHHHHcCCC--------------------hHHHHH-HHHHHHHHHHhCCCCcHHHH--HHH-HHHhccCChh
Confidence 67788999999999887 332222 22222222 23344443321 122 2222278888
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
++.+.+.+.+....-...... .......-+ .......|...+...+...-...............-......++..
T Consensus 139 ~~~~~L~~mi~~~~~~e~~~~---~~l~~i~~l-~~~~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~ 214 (278)
T PF08631_consen 139 EYEEILMRMIRSVDHSESNFD---SILHHIKQL-AEKSPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLS 214 (278)
T ss_pred HHHHHHHHHHHhcccccchHH---HHHHHHHHH-HhhCcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCcccc
Confidence 888888887765432222111 111111111 1223455666666555432222111012222111111112222222
Q ss_pred HH--HHHHHHHHHHHHHhcc-------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10738 298 TA--IDYHLRHLIIAQQLMD-------RVGEGRACWSLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 298 ~A--~~~~~~al~~~~~~~~-------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 347 (609)
.. ++-....+........ .......+|+.|..+.+.++|+.|..+|+-++
T Consensus 215 ~~~~i~~l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 215 SSEKIESLEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL 273 (278)
T ss_pred chhHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence 22 3333333332222111 22234567889999999999999999999876
|
It is also involved in sporulation []. |
| >KOG3081|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.0035 Score=59.23 Aligned_cols=247 Identities=14% Similarity=0.040 Sum_probs=146.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
...++..|+|..++..-++.-... .+. .....+.+.|..+|.+...+.-...+- .....+...++.
T Consensus 15 iRn~fY~Gnyq~~ine~~~~~~~~-~~~----e~d~y~~raylAlg~~~~~~~eI~~~~---------~~~lqAvr~~a~ 80 (299)
T KOG3081|consen 15 IRNYFYLGNYQQCINEAEKFSSSK-TDV----ELDVYMYRAYLALGQYQIVISEIKEGK---------ATPLQAVRLLAE 80 (299)
T ss_pred HHHHHHhhHHHHHHHHHHhhcccc-chh----HHHHHHHHHHHHccccccccccccccc---------CChHHHHHHHHH
Confidence 566778888888887766654433 222 245566777888887765544322211 111233444454
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
+...-++.++-+.-..+-+.... . .........-|.+|..-|+ +++|+........
T Consensus 81 ~~~~e~~~~~~~~~l~E~~a~~~--~--~sn~i~~l~aa~i~~~~~~--------------------~deAl~~~~~~~~ 136 (299)
T KOG3081|consen 81 YLELESNKKSILASLYELVADST--D--GSNLIDLLLAAIIYMHDGD--------------------FDEALKALHLGEN 136 (299)
T ss_pred HhhCcchhHHHHHHHHHHHHhhc--c--chhHHHHHHhhHHhhcCCC--------------------hHHHHHHHhccch
Confidence 44444444443333333221111 1 1222345566778888888 9999887766332
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----CCHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL----GEYQAASEHYK 264 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~ 264 (609)
+ .+...--.++.++.+++-|...+++..++..+. .+..||..++.. +++..|.-+|+
T Consensus 137 l-----------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~--------tLtQLA~awv~la~ggek~qdAfyife 197 (299)
T KOG3081|consen 137 L-----------EAAALNVQILLKMHRFDLAEKELKKMQQIDEDA--------TLTQLAQAWVKLATGGEKIQDAFYIFE 197 (299)
T ss_pred H-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchHH--------HHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 2 223333456777788888888888877765442 344455555432 34556665555
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 265 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+.-+. .......+...+.++..+|+|++|...++.++.-..+ ...++.++-.+-...|...++..-+-
T Consensus 198 E~s~k------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~------dpetL~Nliv~a~~~Gkd~~~~~r~l 265 (299)
T KOG3081|consen 198 ELSEK------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK------DPETLANLIVLALHLGKDAEVTERNL 265 (299)
T ss_pred HHhcc------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC------CHHHHHHHHHHHHHhCCChHHHHHHH
Confidence 43321 1223667788899999999999999999998864333 35577888888888888776655433
|
|
| >COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.0037 Score=59.37 Aligned_cols=233 Identities=13% Similarity=0.018 Sum_probs=159.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLND--KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
..+++-....+++++|+..|.+.+.---...+ ....-.+..+++.+|...|+ +..-.+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~--------------------~~~l~~ 66 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGD--------------------YCSLGD 66 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCC--------------------cchHHH
Confidence 34566667778888888888887754111111 11344577899999999998 554444
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
......+.......+...-.+...+-..-+....++.-+..+...++.+.+..........-..+..+++..|+|.+|+.
T Consensus 67 ~i~~sre~m~~ftk~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~Ysdala 146 (421)
T COG5159 67 TITSSREAMEDFTKPKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALA 146 (421)
T ss_pred HHHhhHHHHHHhcchhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 44444444433332222111222222233345667788888888888777655554445566678889999999999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
.....+.-..+..+......++..-..+|....+..++..-+..|...+...-- +...+..-..-|.++..-.+|.-|.
T Consensus 147 lIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~ 226 (421)
T COG5159 147 LINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTAS 226 (421)
T ss_pred HHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHH
Confidence 999999988888888888888888889999999999998888887776655432 2333444444466777788999999
Q ss_pred HHHHHHHHHHHHcCCC
Q psy10738 341 YFATKHLEISKQLGDP 356 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~ 356 (609)
.||-+|++-+......
T Consensus 227 SYF~Ea~Egft~l~~d 242 (421)
T COG5159 227 SYFIEALEGFTLLKMD 242 (421)
T ss_pred HHHHHHHhccccccch
Confidence 9999999887666544
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.86 E-value=0.00016 Score=62.26 Aligned_cols=108 Identities=14% Similarity=0.053 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
+...++..|...+..|+|++|++.|+.+....|..+- ...+...+|.+|+..+++++|+..+++-+++.+. ++...
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~y-a~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~vd 84 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEY-AEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNVD 84 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCcc
Confidence 3467788999999999999999999999998885433 2457889999999999999999999999888544 55667
Q ss_pred HHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGK---------------YDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~---------------~~~A~~~~~~al~l~~~ 132 (609)
.+++..|.++..+.. ...|...|++.+...|.
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 899999999988876 67788888877776663
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0003 Score=62.04 Aligned_cols=97 Identities=9% Similarity=0.087 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
....+..|.-++..|++++|...|+-.... .+...+.+..||-++..+++|++|+..|..+..+.. ..
T Consensus 37 le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~------~d 104 (165)
T PRK15331 37 MDGLYAHAYEFYNQGRLDEAETFFRFLCIY------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK------ND 104 (165)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc------CC
Confidence 456678899999999999999999987776 677788899999999999999999999999988765 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
....+..|.+|..+|+ ...|...|+.++.
T Consensus 105 p~p~f~agqC~l~l~~--------------------~~~A~~~f~~a~~ 133 (165)
T PRK15331 105 YRPVFFTGQCQLLMRK--------------------AAKARQCFELVNE 133 (165)
T ss_pred CCccchHHHHHHHhCC--------------------HHHHHHHHHHHHh
Confidence 3457899999999999 9999999988877
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00023 Score=67.81 Aligned_cols=102 Identities=18% Similarity=0.123 Sum_probs=66.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 322 (609)
.++.|.-++..|+|..|...|..-++-++. ....+.++++||.+++.+|+|+.|...|..+.+-. +......++
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~---s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~---P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPN---STYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY---PKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC---CCCCCChHH
Confidence 566666666777777777777666554443 23346667777777777777777777776665533 333445567
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
++.||.+...+|+.++|...|++.++-+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 7777777777777777777777766554
|
|
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.011 Score=57.53 Aligned_cols=165 Identities=15% Similarity=0.082 Sum_probs=122.1
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..++..|++.+|...+++.++-.|.|.- ++..--.+++..|+...-...+++.+... ..+.|-...+...++.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDll----a~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDLL----AVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAF 183 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhhh----hhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHh
Confidence 45567788889999999999998888743 44445567788888887777777665431 3345666777788888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
.+...|-|++|.+...+++++.+ ....+...++.++...|+ +.++.++..+.-.
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~------~D~Wa~Ha~aHVlem~~r--------------------~Keg~eFM~~ted 237 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINR------FDCWASHAKAHVLEMNGR--------------------HKEGKEFMYKTED 237 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCC------cchHHHHHHHHHHHhcch--------------------hhhHHHHHHhccc
Confidence 89999999999999999998877 667778888889999998 8888887766544
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
..+.. ......-|...+.+|...+.|+.|++.|..-+
T Consensus 238 ~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ei 274 (491)
T KOG2610|consen 238 DWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDREI 274 (491)
T ss_pred chhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHHHH
Confidence 43311 12223455667888888899999999987644
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.00015 Score=55.74 Aligned_cols=57 Identities=21% Similarity=0.388 Sum_probs=47.2
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
..++...++|++|+.++++++..+|+++. .+...|.++...|++.+|+..++++++.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPE----LWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccch----hhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678888888888888888888888744 7788888888888888888888888877
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.78 E-value=0.00017 Score=69.76 Aligned_cols=102 Identities=22% Similarity=0.334 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+-..|.-+++..+|..|+..|.++|+....|+...+.+|.+.+-+.+.+|+|..|+.-+.+++.+ .|....++
T Consensus 83 n~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------~P~h~Ka~ 156 (390)
T KOG0551|consen 83 NYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------KPTHLKAY 156 (390)
T ss_pred HHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------Ccchhhhh
Confidence 344569999999999999999999999999999999999999999999999999999999999999 89999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.-|.++..+.++.+|..+++..+.+..
T Consensus 157 ~R~Akc~~eLe~~~~a~nw~ee~~~~d~ 184 (390)
T KOG0551|consen 157 IRGAKCLLELERFAEAVNWCEEGLQIDD 184 (390)
T ss_pred hhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence 9999999999999999999999877654
|
|
| >KOG2796|consensus | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.0031 Score=59.30 Aligned_cols=177 Identities=13% Similarity=0.147 Sum_probs=138.4
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHh------------CCcc-----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQA------------GTDD-----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~------------~~~~-----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+-|++....|+..+.+.-+...... .|+. ......+.+.+..++.-.|+|.-++..+.+.++.
T Consensus 127 lhAe~~~~lgnpqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~ 206 (366)
T KOG2796|consen 127 LHAELQQYLGNPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVIKY 206 (366)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHHHh
Confidence 4467777777777776655544332 1111 1123456777888888999999999999998884
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
+++........+|.+....|+.+.|..++++.-+....+.+......+..+.+.+|.-.++
T Consensus 207 -----~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn-------------- 267 (366)
T KOG2796|consen 207 -----YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNN-------------- 267 (366)
T ss_pred -----CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccc--------------
Confidence 3466677888999999999999999999998888777777777777888899999999998
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
|..|...+.+++.. .+..+.+.++.|.|...+|+...|++.++.++...+...
T Consensus 268 ------~a~a~r~~~~i~~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 268 ------FAEAHRFFTEILRM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred ------hHHHHHHHhhcccc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 99999999887765 344566788999999999999999999999988776543
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0025 Score=56.77 Aligned_cols=161 Identities=15% Similarity=0.132 Sum_probs=112.3
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+......=+.+.+..-..+.+++.+. ..-.+.||+.....|+ +.+|..+|+++
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~ApT-------vqnr~rLa~al~elGr--------------------~~EA~~hy~qa 115 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAIAPT-------VQNRYRLANALAELGR--------------------YHEAVPHYQQA 115 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhhchh-------HHHHHHHHHHHHHhhh--------------------hhhhHHHHHHH
Confidence 33444444555555555555555552 2345678888888898 89999999888
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+.-. -......+..+++..+..+++..|...+++..+..+....+ .....+|.++...|.+.+|...|+.+
T Consensus 116 lsG~-----fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~p----d~~Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 116 LSGI-----FAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSP----DGHLLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred hccc-----cCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCC----CchHHHHHHHHhcCCchhHHHHHHHH
Confidence 7532 22234567788888889999999998888887765443221 25567888899999999999999988
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+...+. ..+....+..+.++|+..+|..-+....+..
T Consensus 187 ~~~ypg-------~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~ 223 (251)
T COG4700 187 ISYYPG-------PQARIYYAEMLAKQGRLREANAQYVAVVDTA 223 (251)
T ss_pred HHhCCC-------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence 887765 4455556778888888888877666554433
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0029 Score=57.95 Aligned_cols=132 Identities=17% Similarity=0.164 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
..+-++-++.-++-++..........++..+|..|...|+++.|++.|.++.+.. .........+.++..+.+..++
T Consensus 12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCC
Confidence 4444555555555555555566777889999999999999999999999876653 3344455677888888889999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+.....++.++..+....++..........-|..+...++|.+|...|-.+....
T Consensus 89 ~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999888887766655555566666777778888888888887765443
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.00016 Score=73.88 Aligned_cols=65 Identities=17% Similarity=0.111 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA---KSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~---~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
.+..++++|.+|+..|+|++|+..|++++++ .|... .+|+++|.+|..+|++++|+.++++++++
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL------~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL------NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh------CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4668999999999999999999999999999 56655 45999999999999999999999999986
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.078 Score=54.57 Aligned_cols=129 Identities=12% Similarity=0.049 Sum_probs=94.7
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHc-
Q psy10738 196 TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV-LAQDL- 273 (609)
Q Consensus 196 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 273 (609)
....+..+...+.+....|+++.|..++.++.......... ...+....+.+....|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 56677889999999999999999999999887654222211 223667788999999999999999988887 22211
Q ss_pred --------------------------CCcHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHhcchhhHHH
Q psy10738 274 --------------------------GDRAVEAQACYSLGNTYTLL------RDYPTAIDYHLRHLIIAQQLMDRVGEGR 321 (609)
Q Consensus 274 --------------------------~~~~~~~~~~~~la~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 321 (609)
......+.++..+|...... +..++++..|.++..+.+... .
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~------k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE------K 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH------H
Confidence 12244567788888888777 889999999999998876632 3
Q ss_pred HHHHHHHHHHH
Q psy10738 322 ACWSLGNAHAA 332 (609)
Q Consensus 322 ~~~~La~~~~~ 332 (609)
++..+|..+..
T Consensus 294 ~~~~~a~~~~~ 304 (352)
T PF02259_consen 294 AWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHH
Confidence 55556555543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.00082 Score=62.37 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=95.2
Q ss_pred CCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCcchhH------HHHHHHHHHHHHHHhCCHHHHH
Q psy10738 15 GADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQA--------GTDDLRT------LSAIYSQLGNAYFYLGDYQKAM 80 (609)
Q Consensus 15 ~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~~~~------~a~~~~~lg~~~~~~g~~~~A~ 80 (609)
+.++....-.+-.+|+.+++.|+|.+|...|..|+.. .|.++++ ..-.+.+.+.|+...|+|-+++
T Consensus 171 ddeKmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevl 250 (329)
T KOG0545|consen 171 DDEKMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVL 250 (329)
T ss_pred chHhhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHH
Confidence 4445555666777899999999999999999999753 4555543 2346788899999999999999
Q ss_pred HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 81 QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 81 ~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.+...+.. .+....+|+..|.++...-+..+|..-+.+++++.+.
T Consensus 251 eh~seiL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps 296 (329)
T KOG0545|consen 251 EHCSEILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS 296 (329)
T ss_pred HHHHHHHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence 999999998 8889999999999999999999999999999998774
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0033 Score=56.10 Aligned_cols=134 Identities=15% Similarity=0.085 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
-.+.||+....+|++.+|..+|++++.= .-......+..+++..+..+++..|...+++..+..+.... +.
T Consensus 91 nr~rLa~al~elGr~~EA~~hy~qalsG-----~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----pd 161 (251)
T COG4700 91 NRYRLANALAELGRYHEAVPHYQQALSG-----IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----PD 161 (251)
T ss_pred HHHHHHHHHHHhhhhhhhHHHHHHHhcc-----ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----CC
Confidence 4567899999999999999999998752 11112346788999999999999999999988877654433 34
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
....+|.++...|.+.+|...|+.++...+.. .+....+..+.++|+..+|..-+....+-..
T Consensus 162 ~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-------~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 162 GHLLFARTLAAQGKYADAESAFEVAISYYPGP-------QARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred chHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-------HHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 55678999999999999999999999876642 3444567888899988888877666555443
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00086 Score=54.44 Aligned_cols=81 Identities=25% Similarity=0.213 Sum_probs=56.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcchh---hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 291 TLLRDYPTAIDYHLRHLIIAQQLMDRV---GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 291 ~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
...|+|..|++.+.+............ ....+..++|.++...|++++|+..+++|+.++++.++......++..+.
T Consensus 9 ~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~ 88 (94)
T PF12862_consen 9 LRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLA 88 (94)
T ss_pred HHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
Confidence 456777777777777776666554433 44556677777777778888888888888887777777777777777776
Q ss_pred HHHH
Q psy10738 368 DLRK 371 (609)
Q Consensus 368 ~l~~ 371 (609)
.+..
T Consensus 89 ~l~~ 92 (94)
T PF12862_consen 89 NLLK 92 (94)
T ss_pred HHhh
Confidence 6543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.0029 Score=57.90 Aligned_cols=130 Identities=16% Similarity=0.126 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+-++-++.-++-++.+........++..+|..|...|+++.|++.|.++.+.. .........+..+..+....+++.
T Consensus 14 ~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~---~~~~~~id~~l~~irv~i~~~d~~ 90 (177)
T PF10602_consen 14 EELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC---TSPGHKIDMCLNVIRVAIFFGDWS 90 (177)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc---CCHHHHHHHHHHHHHHHHHhCCHH
Confidence 34455555566666666677778899999999999999999999999977654 334446778888999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+..++.++-.+....++..........-|..+...++|.+|...|-.+..-+
T Consensus 91 ~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 91 HVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 99999999999988877766666677777888889999999999888776544
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.00028 Score=54.24 Aligned_cols=60 Identities=27% Similarity=0.392 Sum_probs=55.9
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 66 lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
|..+|...+++++|+.++++++.+ .|.....+...|.++...|++.+|+..++++++..+
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL------DPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 356889999999999999999999 788899999999999999999999999999998776
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.00021 Score=54.06 Aligned_cols=55 Identities=24% Similarity=0.301 Sum_probs=49.8
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+..|++++|+..|++++.. .|....+++.+|.+|...|++++|...+++++...+
T Consensus 2 l~~~~~~~A~~~~~~~l~~------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 56 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQR------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDP 56 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHH------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGT
T ss_pred hhccCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence 5689999999999999999 888899999999999999999999999999887665
|
... |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.018 Score=47.41 Aligned_cols=112 Identities=17% Similarity=0.117 Sum_probs=80.3
Q ss_pred HHHHHHH--HHHHhCCHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 242 ANSNLGN--SHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 242 ~~~~la~--~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+|..|+. -.+.-|-|++|..-+.+++++...+.. .-..+.++..|+.++..+|+|++++....+++..+..-
T Consensus 9 aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRR 88 (144)
T PF12968_consen 9 AYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRR 88 (144)
T ss_dssp HHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhc
Confidence 4444433 345567888888888888888776532 22356778889999999999999999999999888776
Q ss_pred cc-----hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 314 MD-----RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 314 ~~-----~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+. -.....+.++.|..+..+|+.++|+..|+.+-++..+-
T Consensus 89 GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 89 GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAER 133 (144)
T ss_dssp --TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-
T ss_pred cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHH
Confidence 54 12234456778889999999999999999999987654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.00025 Score=72.63 Aligned_cols=71 Identities=20% Similarity=0.186 Sum_probs=62.4
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.+..+.+++++|.+|...|+|++|+.+|++++++.+.. .....+++++|.+|..+|+
T Consensus 71 dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~---aeA~~A~yNLAcaya~LGr-------------------- 127 (453)
T PLN03098 71 DVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNP---DEAQAAYYNKACCHAYREE-------------------- 127 (453)
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCc---hHHHHHHHHHHHHHHHcCC--------------------
Confidence 56778999999999999999999999999999997721 1222579999999999999
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLAL 189 (609)
Q Consensus 176 ~~~A~~~~~~al~~ 189 (609)
+++|+.++++++++
T Consensus 128 ~dEAla~LrrALel 141 (453)
T PLN03098 128 GKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999999986
|
|
| >KOG4648|consensus | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.00035 Score=67.78 Aligned_cols=96 Identities=20% Similarity=0.193 Sum_probs=88.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
-..|+-|+.+|.|++|+.+|.+++.. .+..+..+.+.+..|.....|..|..-|..|+.+.. ....+|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~------~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAV------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDK------LYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhcc------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhH------HHHHHH
Confidence 46799999999999999999999998 787888999999999999999999999999999988 788899
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
...|..-..+|. ..+|.+-++.++.+-.
T Consensus 169 SRR~~AR~~Lg~--------------------~~EAKkD~E~vL~LEP 196 (536)
T KOG4648|consen 169 SRRMQARESLGN--------------------NMEAKKDCETVLALEP 196 (536)
T ss_pred HHHHHHHHHHhh--------------------HHHHHHhHHHHHhhCc
Confidence 999999999999 9999999999988743
|
|
| >PF12862 Apc5: Anaphase-promoting complex subunit 5 | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.0025 Score=51.69 Aligned_cols=81 Identities=20% Similarity=0.131 Sum_probs=57.7
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q psy10738 250 HIFLGEYQAASEHYKRTLVLAQDLGDRA---VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL 326 (609)
Q Consensus 250 ~~~~g~~~~A~~~~~~al~~~~~~~~~~---~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~L 326 (609)
.+..|+|..|.+.+.+..+......... ....++.++|.++...|++++|+..+++++.++++.+|......++..+
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~ 87 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWL 87 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 3456777777777777777766654433 4555677788888888888888888888888888888777766666666
Q ss_pred HHHH
Q psy10738 327 GNAH 330 (609)
Q Consensus 327 a~~~ 330 (609)
..+.
T Consensus 88 ~~l~ 91 (94)
T PF12862_consen 88 ANLL 91 (94)
T ss_pred HHHh
Confidence 6553
|
|
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.11 Score=50.53 Aligned_cols=84 Identities=14% Similarity=0.093 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
++.+.+|+..+...+...........+|..|...|++++|+.+|+.+.....+-+-......++..+..|+...|+.+..
T Consensus 158 I~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~ 237 (247)
T PF11817_consen 158 IELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDY 237 (247)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 33344444444444444444445555555555555555555555555555555454444555555555555555555554
Q ss_pred HHHH
Q psy10738 340 LYFA 343 (609)
Q Consensus 340 ~~~~ 343 (609)
+.+.
T Consensus 238 l~~~ 241 (247)
T PF11817_consen 238 LTTS 241 (247)
T ss_pred HHHH
Confidence 4443
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.018 Score=47.36 Aligned_cols=115 Identities=19% Similarity=0.272 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHH--HHhCCHHHHHHHHHHHHHHHHHcCC------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAY--FYLGDYQKAMQYHKQDLTLARNMED------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 59 ~a~~~~~lg~~~--~~~g~~~~A~~~~~~al~~~~~~~d------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
.+.+|..|+..- ..-|-|++|...++++++..+.+.. .-..+.++..|+..+..+|+|++++....+++..+
T Consensus 6 Va~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YF 85 (144)
T PF12968_consen 6 VAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYF 85 (144)
T ss_dssp HHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHH
Confidence 345666665544 4458899999999999999887743 22346788889999999999999999999999998
Q ss_pred HHcCCc-----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 131 RQLNDK-----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 131 ~~~~d~-----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
..-+.. ...+.+.++.|..+...|. .++|+..|+.+-++..+.
T Consensus 86 NRRGEL~qdeGklWIaaVfsra~Al~~~Gr--------------------~~eA~~~fr~agEMiaER 133 (144)
T PF12968_consen 86 NRRGELHQDEGKLWIAAVFSRAVALEGLGR--------------------KEEALKEFRMAGEMIAER 133 (144)
T ss_dssp HHH--TTSTHHHHHHHHHHHHHHHHHHTT---------------------HHHHHHHHHHHHHHHHH-
T ss_pred hhccccccccchhHHHHHHHHHHHHHhcCC--------------------hHHHHHHHHHHHHHHHHH
Confidence 765532 2456677889999999999 999999999998887654
|
The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.0088 Score=61.62 Aligned_cols=210 Identities=18% Similarity=0.112 Sum_probs=125.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+-.-.+...+...-++...+|+++.+ ..+.+|..|+.-... ...+|..+|++
T Consensus 174 IMq~AWRERnp~aRIkaA~eALei~p------dCAdAYILLAEEeA~----------------------Ti~Eae~l~rq 225 (539)
T PF04184_consen 174 IMQKAWRERNPQARIKAAKEALEINP------DCADAYILLAEEEAS----------------------TIVEAEELLRQ 225 (539)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhhh------hhhHHHhhccccccc----------------------CHHHHHHHHHH
Confidence 33444566777778888888888877 455555555431111 14555555555
Q ss_pred HHHHHHHh-------C------------ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Q psy10738 186 NLALMKEI-------N------------DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNL 246 (609)
Q Consensus 186 al~~~~~~-------~------------~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 246 (609)
+++..+.. . +......+...+|.+..++|+.++|++.++..++..+.. ....++.+|
T Consensus 226 AvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~----~~l~IrenL 301 (539)
T PF04184_consen 226 AVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNL----DNLNIRENL 301 (539)
T ss_pred HHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCcc----chhhHHHHH
Confidence 55544332 0 111124566789999999999999999999988765421 223488999
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-hCC---------------HHHHHHHHHHHHHHH
Q psy10738 247 GNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL-LRD---------------YPTAIDYHLRHLIIA 310 (609)
Q Consensus 247 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~---------------~~~A~~~~~~al~~~ 310 (609)
..+++..+.|.++...+.+--++ .-+ ..+..++.-|.+-.+ .++ -..|.+.+.+|++..
T Consensus 302 ie~LLelq~Yad~q~lL~kYdDi----~lp-kSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefN 376 (539)
T PF04184_consen 302 IEALLELQAYADVQALLAKYDDI----SLP-KSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFN 376 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHhccc----cCC-chHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhC
Confidence 99999999999998888764322 111 123344443333221 222 123566777777766
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+...........+..--.-+.+.|+ .+|+.|.--++...+.+
T Consensus 377 PHVp~YLLe~K~LilPPehilkrGD-SEAiaYAf~hL~hWk~v 418 (539)
T PF04184_consen 377 PHVPKYLLEMKSLILPPEHILKRGD-SEAIAYAFFHLQHWKRV 418 (539)
T ss_pred CCCchhhhccCCCCCChHHhcCCCc-HHHHHHHHHHHHHHhcC
Confidence 5543311111111111234556675 89999999998888654
|
The molecular function of this protein is uncertain. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.015 Score=62.15 Aligned_cols=109 Identities=16% Similarity=0.091 Sum_probs=63.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
+.+.|.+.+...... .|.-+..++..|.++...|+.++|+..+++++...... +.....+++.+|.++..++
T Consensus 248 ~~~~a~~lL~~~~~~------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~--~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW--KQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH--HhHHHHHHHHHHHHHHHHc
Confidence 344455555555444 45555666666777777777777777777666322221 1233455666777777777
Q ss_pred cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH
Q psy10738 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216 (609)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 216 (609)
+ |++|..++....+. +....+...+..|.++...|+.
T Consensus 320 ~--------------------w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~ 356 (468)
T PF10300_consen 320 D--------------------WEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGRE 356 (468)
T ss_pred h--------------------HHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccc
Confidence 6 67776666655543 1233455555666666666666
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >KOG2610|consensus | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.016 Score=56.50 Aligned_cols=161 Identities=13% Similarity=-0.040 Sum_probs=85.4
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
+.+..|++.+|...+.+.++- .|....++..--..+..+|+...-...+++.+... ..+.+....+...++.
T Consensus 112 i~~~~g~~h~a~~~wdklL~d------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~GmyaF 183 (491)
T KOG2610|consen 112 ILWGRGKHHEAAIEWDKLLDD------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMYAF 183 (491)
T ss_pred HhhccccccHHHHHHHHHHHh------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHHHh
Confidence 334455555555555555544 44444444444455555666655555555443221 2233344555555566
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
.+...|- |++|.+...+++++ ++...++...++.++...|++.++.++..+.-.
T Consensus 184 gL~E~g~--------------------y~dAEk~A~ralqi------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted 237 (491)
T KOG2610|consen 184 GLEECGI--------------------YDDAEKQADRALQI------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTED 237 (491)
T ss_pred hHHHhcc--------------------chhHHHHHHhhccC------CCcchHHHHHHHHHHHhcchhhhHHHHHHhccc
Confidence 6666666 66666666666665 344455556666666666666666666655433
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
..+.. ......-|...|.+|+..+.|+.|++.|..
T Consensus 238 ~Wr~s--~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 238 DWRQS--WMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred chhhh--hHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 33211 111123344455566666666666666654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0017 Score=56.08 Aligned_cols=106 Identities=16% Similarity=0.081 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
..++.-|...+..|+|++|++.++....-.+. ......+...+|.+|+..+++++|+..+++-+++.|...+ ..
T Consensus 11 ~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~---g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vd 84 (142)
T PF13512_consen 11 QELYQEAQEALQKGNYEEAIKQLEALDTRYPF---GEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VD 84 (142)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC---CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---cc
Confidence 45677788888899999999988876654433 3334458888999999999999999999999988876543 46
Q ss_pred HHHHHHHHHHHHhCC---------------HHHHHHHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRD---------------YPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 281 ~~~~~la~~~~~~g~---------------~~~A~~~~~~al~~~~~ 312 (609)
.+++..|.++..+.. ..+|...|++.+...++
T Consensus 85 Ya~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~ 131 (142)
T PF13512_consen 85 YAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPN 131 (142)
T ss_pred HHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcC
Confidence 677888888777665 55566666555554443
|
|
| >KOG4322|consensus | Back alignment and domain information |
|---|
Probab=97.36 E-value=0.11 Score=52.70 Aligned_cols=191 Identities=12% Similarity=-0.017 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
......+..+.++....+ +..|...+.+..-.............++..++.++..-+..-
T Consensus 271 ~svE~l~R~A~il~A~~q--------------------~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~ 330 (482)
T KOG4322|consen 271 QSVENLCRFAHILHADEQ--------------------VSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTAC 330 (482)
T ss_pred hhHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCch
Confidence 445666678888888888 888888888877666666666677778888888888888888
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH------H
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY------T 291 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~------~ 291 (609)
.+..+.-.++....+.......+..-.+++..+..+|-.+.|...+..++......+.-...+.++...++++ .
T Consensus 331 l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~ 410 (482)
T KOG4322|consen 331 LNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC 410 (482)
T ss_pred hhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh
Confidence 8888888888888887777777778888899999999999999999998887765544333333333222222 1
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH---HHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK---ALYFATKHLE 348 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~---A~~~~~~al~ 348 (609)
...+.+.+..++++|-.+..+++-......+.+.++..|-..|+.++ +...|+++..
T Consensus 411 ~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 411 ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 45577888888999888888888888888888999999999888654 4445555544
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.034 Score=50.39 Aligned_cols=137 Identities=18% Similarity=0.157 Sum_probs=99.0
Q ss_pred HHHHHHHHHcCCHH---HHHHHHHHHHHHHHH---------------hCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 204 GNLGNTYYLLGNFK---QAIYYHQERLKIARE---------------FGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 204 ~~lg~~~~~~g~~~---~A~~~~~~al~~~~~---------------~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
...|+-|+...+.+ +|-..|+++++.... ++....-..+...++..+...|++++|+..++.
T Consensus 35 ~lfGW~ywq~~q~~q~~~AS~~Y~~~i~~~~ak~~~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~ 114 (207)
T COG2976 35 GLFGWRYWQSHQVEQAQEASAQYQNAIKAVQAKKPKSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQ 114 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHH
Confidence 34456666555444 666677776655422 112222334566788899999999999999998
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
++.... |......+-..||.+...+|.+++|+..+.. ..+....+......|.++...|+.++|+..|++
T Consensus 115 ~l~~t~---De~lk~l~~lRLArvq~q~~k~D~AL~~L~t-------~~~~~w~~~~~elrGDill~kg~k~~Ar~ay~k 184 (207)
T COG2976 115 ALAQTK---DENLKALAALRLARVQLQQKKADAALKTLDT-------IKEESWAAIVAELRGDILLAKGDKQEARAAYEK 184 (207)
T ss_pred HHccch---hHHHHHHHHHHHHHHHHHhhhHHHHHHHHhc-------cccccHHHHHHHHhhhHHHHcCchHHHHHHHHH
Confidence 885443 3344566778999999999999999877653 333444556677889999999999999999999
Q ss_pred HHHHH
Q psy10738 346 HLEIS 350 (609)
Q Consensus 346 al~l~ 350 (609)
+++..
T Consensus 185 Al~~~ 189 (207)
T COG2976 185 ALESD 189 (207)
T ss_pred HHHcc
Confidence 99875
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.24 Score=51.88 Aligned_cols=78 Identities=17% Similarity=0.010 Sum_probs=64.2
Q ss_pred cCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH-HHHhcchhhHHHHHHHHHHHHHHcCC-hHHHHHHHHHHHHHH
Q psy10738 273 LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII-AQQLMDRVGEGRACWSLGNAHAARGN-HEKALYFATKHLEIS 350 (609)
Q Consensus 273 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~~~~~~~La~~~~~~g~-~~~A~~~~~~al~l~ 350 (609)
..+......-+..+|.++..+|+...|..+|...++- .....+.+....+++.+|.+|..+|. ..++..++.+|-+..
T Consensus 442 ~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 442 IDDSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 3455556777788899999999999999999987754 23345677888999999999999999 999999999988765
|
|
| >KOG0551|consensus | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.0022 Score=62.37 Aligned_cols=127 Identities=19% Similarity=0.252 Sum_probs=106.4
Q ss_pred cCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 35 AGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
.|++..-...++..... ..+++...+.-|-.-|+-|+...+|..|+..|.+++.. +.+|+...+..|.|.|-+....
T Consensus 55 ~gd~~~~~~~LqslK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l 132 (390)
T KOG0551|consen 55 EGDPNPDNVCLQSLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYL 132 (390)
T ss_pred CCCCCccHHHHHHhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHH
Confidence 35554445555544443 33566678888999999999999999999999998765 7788888999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|+|..|+.-+.+++.+.+ ....+++.-|.++..+.. +..|..+.+..+.+
T Consensus 133 ~NyRs~l~Dcs~al~~~P------~h~Ka~~R~Akc~~eLe~--------------------~~~a~nw~ee~~~~ 182 (390)
T KOG0551|consen 133 GNYRSALNDCSAALKLKP------THLKAYIRGAKCLLELER--------------------FAEAVNWCEEGLQI 182 (390)
T ss_pred HHHHHHHHHHHHHHhcCc------chhhhhhhhhHHHHHHHH--------------------HHHHHHHHhhhhhh
Confidence 999999999999999877 677899999999999999 99999998887665
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.31 E-value=0.16 Score=56.03 Aligned_cols=212 Identities=13% Similarity=0.035 Sum_probs=113.2
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
+..+++|..+.+.|.+++|..+++..-...++|.. .+..+-.+|..+|++++|..+|++++.. .|. -..
T Consensus 44 ~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~----tLq~l~~~y~d~~~~d~~~~~Ye~~~~~------~P~-eel 112 (932)
T KOG2053|consen 44 YAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL----TLQFLQNVYRDLGKLDEAVHLYERANQK------YPS-EEL 112 (932)
T ss_pred HHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH----HHHHHHHHHHHHhhhhHHHHHHHHHHhh------CCc-HHH
Confidence 55677788899999999999777666555555533 5667788899999999999999998887 454 556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
++.+-.+|.+.+.|.+-.+. ++++++..+..... .|..+..+...... .++... ..-..-|...
T Consensus 113 l~~lFmayvR~~~yk~qQka---a~~LyK~~pk~~yy--fWsV~Slilqs~~~-------~~~~~~----~i~l~LA~~m 176 (932)
T KOG2053|consen 113 LYHLFMAYVREKSYKKQQKA---ALQLYKNFPKRAYY--FWSVISLILQSIFS-------ENELLD----PILLALAEKM 176 (932)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HHHHHHhCCcccch--HHHHHHHHHHhccC-------Cccccc----chhHHHHHHH
Confidence 66666777777777654433 33344433332221 22222222222222 000000 1112233333
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
.++.++.- |.-...+.+... -.+...+|++++|.+.+..-+.-.....+. .........+...++|.+-.+.
T Consensus 177 ~~~~l~~~---gk~~s~aE~~Ly-l~iL~~~~k~~eal~~l~~~la~~l~~~~~----~l~~~~~dllk~l~~w~~l~~l 248 (932)
T KOG2053|consen 177 VQKLLEKK---GKIESEAEIILY-LLILELQGKYQEALEFLAITLAEKLTSANL----YLENKKLDLLKLLNRWQELFEL 248 (932)
T ss_pred HHHHhccC---CccchHHHHHHH-HHHHHhcccHHHHHHHHHHHHHHhccccch----HHHHHHHHHHHHhcChHHHHHH
Confidence 33333221 111122222221 234567889999999884432211111110 1222334555666777766666
Q ss_pred HHHHHHH
Q psy10738 263 YKRTLVL 269 (609)
Q Consensus 263 ~~~al~~ 269 (609)
..+.+..
T Consensus 249 ~~~Ll~k 255 (932)
T KOG2053|consen 249 SSRLLEK 255 (932)
T ss_pred HHHHHHh
Confidence 5555543
|
|
| >KOG2053|consensus | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.12 Score=56.99 Aligned_cols=230 Identities=17% Similarity=0.096 Sum_probs=136.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.-....+++.+|.....+.++..|+.+- +...-|..+.++|..++|..+++..-.. ....-..+..+-.+
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~----a~vLkaLsl~r~gk~~ea~~~Le~~~~~------~~~D~~tLq~l~~~ 86 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALY----AKVLKALSLFRLGKGDEALKLLEALYGL------KGTDDLTLQFLQNV 86 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHhcCchhHHHHHhhhccC------CCCchHHHHHHHHH
Confidence 3456778999999999999999998643 4455677889999999999666543332 22245567788899
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
|..+|++++|..+|++++...+. -..++.+-.+|.+.+. |.+-. +.++++
T Consensus 87 y~d~~~~d~~~~~Ye~~~~~~P~-------eell~~lFmayvR~~~--------------------yk~qQ---kaa~~L 136 (932)
T KOG2053|consen 87 YRDLGKLDEAVHLYERANQKYPS-------EELLYHLFMAYVREKS--------------------YKKQQ---KAALQL 136 (932)
T ss_pred HHHHhhhhHHHHHHHHHHhhCCc-------HHHHHHHHHHHHHHHH--------------------HHHHH---HHHHHH
Confidence 99999999999999999988773 3344555556666665 44332 234555
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH---------HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIY---------YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~---------~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
++..+..+.. .|..+..+.......+++.. ..++.++. .|.....+.+.. .-.++..+|++++|.
T Consensus 137 yK~~pk~~yy--fWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~---~gk~~s~aE~~L-yl~iL~~~~k~~eal 210 (932)
T KOG2053|consen 137 YKNFPKRAYY--FWSVISLILQSIFSENELLDPILLALAEKMVQKLLEK---KGKIESEAEIIL-YLLILELQGKYQEAL 210 (932)
T ss_pred HHhCCcccch--HHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhcc---CCccchHHHHHH-HHHHHHhcccHHHHH
Confidence 5555554433 33344444444444444333 22222221 111111222222 223556788999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 309 (609)
+.+..-+.-.....+ ...-..-...+...+++.+-.+...+.+..
T Consensus 211 ~~l~~~la~~l~~~~----~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k 255 (932)
T KOG2053|consen 211 EFLAITLAEKLTSAN----LYLENKKLDLLKLLNRWQELFELSSRLLEK 255 (932)
T ss_pred HHHHHHHHHhccccc----hHHHHHHHHHHHHhcChHHHHHHHHHHHHh
Confidence 988443321111111 112223345666677777766666665543
|
|
| >KOG4322|consensus | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.13 Score=52.03 Aligned_cols=194 Identities=10% Similarity=-0.012 Sum_probs=149.9
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
-....+..+..+.++....++..|...+.+..-......+......++..++.++..-+.
T Consensus 269 ~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~-------------------- 328 (482)
T KOG4322|consen 269 YQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDT-------------------- 328 (482)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCC--------------------
Confidence 344567778899999999999999999999887776666666777788888888887776
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH----
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI---- 251 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---- 251 (609)
--.+..+.-.++....+...+...+.+-.+++..+..+|-.+.|+..+..++....-.+.-...++++...++++.
T Consensus 329 a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~ 408 (482)
T KOG4322|consen 329 ACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFAL 408 (482)
T ss_pred chhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchh
Confidence 6667777777777777777777777888899999999999999999999999887766654444444333333322
Q ss_pred --HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHH
Q psy10738 252 --FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT---AIDYHLRHLII 309 (609)
Q Consensus 252 --~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~---A~~~~~~al~~ 309 (609)
...+.+.+..++++|-.+..+.+-......+.+-++..|-..|+.++ +...|+++...
T Consensus 409 s~~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~~ 471 (482)
T KOG4322|consen 409 SCANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWRY 471 (482)
T ss_pred hhhhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHh
Confidence 45678889999999999999998888888999999999999998654 44455555443
|
|
| >KOG3783|consensus | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.17 Score=52.96 Aligned_cols=246 Identities=12% Similarity=-0.025 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
...+.+.......|.+.- ....-+..+...|+.+.|+..++.++.. + -.......++.+|+++..+.+|..|
T Consensus 251 ~~~~~Ll~~~~~~p~ga~----wll~~ar~l~~~g~~eaa~~~~~~~v~~-~---~kQ~~~l~~fE~aw~~v~~~~~~~a 322 (546)
T KOG3783|consen 251 ECEKALKKYRKRYPKGAL----WLLMEARILSIKGNSEAAIDMESLSIPI-R---MKQVKSLMVFERAWLSVGQHQYSRA 322 (546)
T ss_pred HHHHHhHHHHHhCCCCcc----HHHHHHHHHHHcccHHHHHHHHHhcccH-H---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444445565532 4455677777778888888888888772 1 1344566788889999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC-----
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN----- 194 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----- 194 (609)
..++....+... +..+..-+..|.|+...+... .....+-++|..+++....+....+
T Consensus 323 ad~~~~L~desd-----WS~a~Y~Yfa~cc~l~~~~~~------------q~~~~ne~~a~~~~k~~~~l~~~a~K~~P~ 385 (546)
T KOG3783|consen 323 ADSFDLLRDESD-----WSHAFYTYFAGCCLLQNWEVN------------QGAGGNEEKAQLYFKVGEELLANAGKNLPL 385 (546)
T ss_pred hhHHHHHHhhhh-----hhHHHHHHHHHHHHhccHHHH------------HhcccchhHHHHHHHHHHHHHHhccccCch
Confidence 999998888876 222322233334443322200 0000013333333333333332210
Q ss_pred ------------ChH----HH--HHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 195 ------------DTA----AQ--GRACGNLGNTYYLL--GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 195 ------------~~~----~~--~~~~~~lg~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
... .. +.-++.++.++... ...++.. -+ .+-...+...+......-+..+|.++..+|
T Consensus 386 E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~-k~-~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg 463 (546)
T KOG3783|consen 386 EKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE-KM-RAELENPKIDDSDDEGLKYLLKGVILRNLG 463 (546)
T ss_pred hHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH-HH-HHHHhccCCCCchHHHHHHHHHHHHHHHcC
Confidence 000 00 00112222222111 1122222 11 111112233456666678888999999999
Q ss_pred CHHHHHHHHHHHHHHH-HHcCCcHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLA-QDLGDRAVEAQACYSLGNTYTLLRD-YPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~ 312 (609)
+...|..++...++-. ....+.+..+.+++.+|.+|..+|. ..+|..++.+|-+...+
T Consensus 464 ~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~~d 523 (546)
T KOG3783|consen 464 DSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYASD 523 (546)
T ss_pred CHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhccc
Confidence 9999999999887543 3346788889999999999999999 99999999998876543
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0038 Score=55.76 Aligned_cols=84 Identities=17% Similarity=0.129 Sum_probs=55.1
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD----------YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
|+.|.+.++.....+|.|.+ .+++.|.++..+.+ +++|+.-|++|+.+ .|....+++++|
T Consensus 7 FE~ark~aea~y~~nP~Dad----nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I------~P~~hdAlw~lG 76 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD----NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI------NPNKHDALWCLG 76 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH----HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-------TT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHhHH----HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc------CCchHHHHHHHH
Confidence 67889999999999998854 66666666665543 45566666666666 788889999999
Q ss_pred HHHHHcCC----HHHHHHHHHHHHHHHH
Q psy10738 108 NTLKVMGK----YDEAMVCCKRHLEISR 131 (609)
Q Consensus 108 ~~~~~~g~----~~~A~~~~~~al~l~~ 131 (609)
++|...+. ..+|..+|++|.+.+.
T Consensus 77 nA~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 77 NAYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 99987654 3345555555544433
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.34 Score=48.77 Aligned_cols=250 Identities=16% Similarity=0.084 Sum_probs=150.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-----------C-
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDD-LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM-----------E- 94 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-----------~- 94 (609)
+-......|-+.+-..+.-++++.-|.- ...-...++.+...++-.|. ++...+.+-+....+. .
T Consensus 36 e~~~~i~kg~~tke~r~I~R~lr~l~~~r~kln~~vL~~~v~~~~~~~s--e~~~~~l~fv~~~~~~~~p~~~~s~~t~~ 113 (493)
T KOG2581|consen 36 EQLAQIDKGVYTKEPRFILRALRLLPSTRRKLNGAVLYKLVSSLLSSGS--EAMDRLLRFVPAFDKNIKPLDTDSPNTQS 113 (493)
T ss_pred HHHHHHhccccccchHHHHHHHHhhhhhHhhhhHHHHHHHHHHHcCCch--HHHHHHHhhcccccccCCccccccccccc
Confidence 3444555665665666666777665531 12223344444444444442 4444333322211110 0
Q ss_pred -----ChhhHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHcCCc----HHHHHHHHHHHHHHHHcccccccCCCC
Q psy10738 95 -----DKLGEAKSSGNLG--NTLKVMGKYDEAMVCCKRHLEISRQLNDK----LSEGRALYNLGNVYHAKGKAIGKVGQQ 163 (609)
Q Consensus 95 -----d~~~~~~a~~~lg--~~~~~~g~~~~A~~~~~~al~l~~~~~d~----~~~~~~~~~lg~~~~~~g~~~~~~~~~ 163 (609)
.-+....+|..+- ..++...++.+|..+-...+.-.. ..+. ...+..|+.+..+|...|+
T Consensus 114 a~~~k~~~~Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~-------- 184 (493)
T KOG2581|consen 114 ALKRKPLPAEIEAYLYLLVLLFLIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGR-------- 184 (493)
T ss_pred ccccCCchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcc--------
Confidence 0011234444333 233445788888888776654322 1221 2446788888999999888
Q ss_pred CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q psy10738 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 243 (609)
...-...+..-+..+.-..+....+...+.|-..|...+.|+.|.....++. .++.......++..
T Consensus 185 ------------l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~ 250 (493)
T KOG2581|consen 185 ------------LADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYL 250 (493)
T ss_pred ------------hHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHH
Confidence 7777777766666655555777778888888889999999999988877653 23333344667788
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302 (609)
Q Consensus 244 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 302 (609)
+.+|.+..-+++|..|.+++-.|+..++.....-..-.+...+-.+-..+|++.+-.-+
T Consensus 251 yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F 309 (493)
T KOG2581|consen 251 YYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVF 309 (493)
T ss_pred HHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhh
Confidence 99999999999999999999999998886322222223333334445567777654433
|
|
| >KOG4642|consensus | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0013 Score=60.93 Aligned_cols=101 Identities=20% Similarity=0.249 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+..-|+.++.-..|+.|+..|.+++.+ .|..+..+.+.+.+|....+++.+..-+.+++++.+ ..+.+
T Consensus 13 lkE~gnk~f~~k~y~~ai~~y~raI~~------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~------N~vk~ 80 (284)
T KOG4642|consen 13 LKEQGNKCFIPKRYDDAIDCYSRAICI------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDP------NLVKA 80 (284)
T ss_pred HHhccccccchhhhchHHHHHHHHHhc------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcCh------HHHHH
Confidence 445677888889999999999999999 888889999999999999999999999999999988 88899
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 195 (609)
++.+|........ |++|+..+.++..+.+...-
T Consensus 81 h~flg~~~l~s~~--------------------~~eaI~~Lqra~sl~r~~~~ 113 (284)
T KOG4642|consen 81 HYFLGQWLLQSKG--------------------YDEAIKVLQRAYSLLREQPF 113 (284)
T ss_pred HHHHHHHHHhhcc--------------------ccHHHHHHHHHHHHHhcCCC
Confidence 9999999999998 99999999999998877643
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.052 Score=56.13 Aligned_cols=127 Identities=16% Similarity=0.046 Sum_probs=95.7
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-------------
Q psy10738 68 NAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN------------- 134 (609)
Q Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~------------- 134 (609)
.-.....+...-++..++|+++ .+..+.+|..|+.-. .....+|..+++++++..+..-
T Consensus 176 q~AWRERnp~aRIkaA~eALei------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~ 247 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFW 247 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchh
Confidence 3445667889999999999999 777888888777432 2336788888888887665321
Q ss_pred ------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 135 ------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208 (609)
Q Consensus 135 ------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 208 (609)
+......+...+|.+....|+ .++|++.+...++... ......++.+|..
T Consensus 248 e~~~~Rdt~~~~y~KrRLAmCarklGr--------------------~~EAIk~~rdLlke~p----~~~~l~IrenLie 303 (539)
T PF04184_consen 248 EAWHRRDTNVLVYAKRRLAMCARKLGR--------------------LREAIKMFRDLLKEFP----NLDNLNIRENLIE 303 (539)
T ss_pred hhhhccccchhhhhHHHHHHHHHHhCC--------------------hHHHHHHHHHHHhhCC----ccchhhHHHHHHH
Confidence 111235566789999999999 9999999988776542 2234568999999
Q ss_pred HHHHcCCHHHHHHHHHHH
Q psy10738 209 TYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 209 ~~~~~g~~~~A~~~~~~a 226 (609)
++..++.|.++...+.+-
T Consensus 304 ~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 304 ALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHhcCCHHHHHHHHHHh
Confidence 999999999998887763
|
The molecular function of this protein is uncertain. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.13 Score=56.30 Aligned_cols=255 Identities=21% Similarity=0.223 Sum_probs=134.2
Q ss_pred CChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 36 GDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLG-----DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 36 g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~~g-----~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
.|.+.|+.+|+.+... .+........+.+.+|.+|.... ++..|+.++.++-.. ....+.+.+|.+
T Consensus 263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~ 334 (552)
T KOG1550|consen 263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVL 334 (552)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHH
Confidence 4777777777777661 00000001225566777776632 566677777766554 334566777777
Q ss_pred HHHcC---CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 110 LKVMG---KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 110 ~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+..-. ++..|.++|..|... ....+.+.+|.+|..- . .+..+...|..++.++
T Consensus 335 ~~~g~~~~d~~~A~~yy~~Aa~~--------G~~~A~~~la~~y~~G-~---------------gv~r~~~~A~~~~k~a 390 (552)
T KOG1550|consen 335 YETGTKERDYRRAFEYYSLAAKA--------GHILAIYRLALCYELG-L---------------GVERNLELAFAYYKKA 390 (552)
T ss_pred HHcCCccccHHHHHHHHHHHHHc--------CChHHHHHHHHHHHhC-C---------------CcCCCHHHHHHHHHHH
Confidence 76654 456777777766543 3355667777766543 1 1122267777777776
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC----CHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLL-GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG----EYQAASE 261 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g----~~~~A~~ 261 (609)
.+.- ...+...++..+... +.+..+...+....+..-+... ..+..+........... +...+..
T Consensus 391 A~~g--------~~~A~~~~~~~~~~g~~~~~~~~~~~~~~a~~g~~~~q--~~a~~l~~~~~~~~~~~~~~~~~~~~~~ 460 (552)
T KOG1550|consen 391 AEKG--------NPSAAYLLGAFYEYGVGRYDTALALYLYLAELGYEVAQ--SNAAYLLDQSEEDLFSRGVISTLERAFS 460 (552)
T ss_pred HHcc--------ChhhHHHHHHHHHHccccccHHHHHHHHHHHhhhhHHh--hHHHHHHHhccccccccccccchhHHHH
Confidence 6541 112233333333222 5555555444443332222111 00001111111111111 3334444
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc-C--
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR-G-- 334 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~-g-- 334 (609)
.+.++... + ...+...||.+|..- .+++.|...|..+..-. +...+++|.+|..- |
T Consensus 461 ~~~~a~~~----g----~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---------~~~~~nlg~~~e~g~g~~ 523 (552)
T KOG1550|consen 461 LYSRAAAQ----G----NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---------AQALFNLGYMHEHGEGIK 523 (552)
T ss_pred HHHHHHhc----c----CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---------hHHHhhhhhHHhcCcCcc
Confidence 44433221 1 255677788887654 46889998888876543 56888999888752 2
Q ss_pred ChHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEI 349 (609)
Q Consensus 335 ~~~~A~~~~~~al~l 349 (609)
....|..++.++.+.
T Consensus 524 ~~~~a~~~~~~~~~~ 538 (552)
T KOG1550|consen 524 VLHLAKRYYDQASEE 538 (552)
T ss_pred hhHHHHHHHHHHHhc
Confidence 256777777776653
|
|
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.011 Score=67.53 Aligned_cols=189 Identities=15% Similarity=0.175 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCh
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDK 96 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~ 96 (609)
......|......|.+.+|.+ .-+++.... .-....+..|..++.++...|++++|+.+..++.-+.+.. .+.
T Consensus 933 ~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen 933 KDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred hhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence 345556778888888888888 555554322 1112257799999999999999999999999998887755 467
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
+.....+.+++...+..++...|+..+.+++.+..-. .+.+..+....+++.++...++
T Consensus 1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e------------------- 1072 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEE------------------- 1072 (1236)
T ss_pred HHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHH-------------------
Confidence 8889999999999999999999999999988765432 2456677778899999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 175 CLQEAIKYYEQNLALMKEIND--TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
++.|+.+.+.|+++.+.... ....+..+..++.++...+++..|+.+.+....+++.
T Consensus 1073 -~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1073 -ADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred -HHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 99999999999997666532 2334556666666666666666666666666555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.031 Score=49.47 Aligned_cols=103 Identities=21% Similarity=0.281 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcch------------------hHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDL------------------RTLSAIYSQLGNAYFYLGDYQKAMQYHK 84 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~ 84 (609)
..+...|......|+...++..+++++.+..++. .....++..++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3445567777888999999999999999743211 1234566778888889999999999999
Q ss_pred HHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 85 ~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+++.. .|..-.++..+-.+|...|+..+|+..|++......
T Consensus 87 ~~l~~------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~ 127 (146)
T PF03704_consen 87 RALAL------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLR 127 (146)
T ss_dssp HHHHH------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHhc------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHH
Confidence 99999 888889999999999999999999999999987766
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.0092 Score=56.34 Aligned_cols=107 Identities=17% Similarity=0.175 Sum_probs=75.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLN-DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~-d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
....+++|++.|.-|+-...-.+ ++...+..+..+|++|...|+ .+....-+..|++.|.+++..-
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~-------------~~~E~~fl~~Al~~y~~a~~~e 155 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD-------------EENEKRFLRKALEFYEEAYENE 155 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC-------------HHHHHHHHHHHHHHHHHHHHhC
Confidence 34568899999998887776554 444778899999999999998 2222333455555555554432
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
...........+.+.+|.++...|++++|+.+|.+.+..-.
T Consensus 156 ~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 156 DFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred cCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 22122345567888999999999999999999998876533
|
|
| >KOG2581|consensus | Back alignment and domain information |
|---|
Probab=97.02 E-value=0.45 Score=47.99 Aligned_cols=180 Identities=16% Similarity=0.080 Sum_probs=117.8
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHh-CCcch----hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQA-GTDDL----RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~----~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
.+.||-.++-..-++.+.++++|..+-...+.. .-.+. -..+.+|+.+..+|-..|+...-...+..-+..+.--
T Consensus 123 Ei~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 123 EIEAYLYLLVLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 466777777777777888999998888777653 11111 1245677888888888888777666666666665555
Q ss_pred CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 94 ~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.|....+.....+=..|...+.|+.|-....+.. ++........++.++.+|.+..-+++
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne~ARY~yY~GrIkaiqld------------------ 262 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNEWARYLYYLGRIKAIQLD------------------ 262 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHHHHHHHHHHhhHHHhhcc------------------
Confidence 5677777777888888888888888877766543 23333334677788888888888888
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
|..|.+++-+|+..++...--.....+...+..+-..+|++.+-.
T Consensus 263 --YssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers 307 (493)
T KOG2581|consen 263 --YSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERS 307 (493)
T ss_pred --hhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchh
Confidence 888888888888765542211111222223333344456655433
|
|
| >PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins | Back alignment and domain information |
|---|
Probab=97.01 E-value=0.0084 Score=53.61 Aligned_cols=93 Identities=18% Similarity=0.311 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Q psy10738 76 YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY----------DEAMVCCKRHLEISRQLNDKLSEGRALYN 145 (609)
Q Consensus 76 ~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~~~~~d~~~~~~~~~~ 145 (609)
|+.|.+.++..... .|..+..+++.|.++..+.++ ++|+.-|++|+.+.| ....++++
T Consensus 7 FE~ark~aea~y~~------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P------~~hdAlw~ 74 (186)
T PF06552_consen 7 FEHARKKAEAAYAK------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINP------NKHDALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHH-------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-T------T-HHHHHH
T ss_pred HHHHHHHHHHHHHh------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCC------chHHHHHH
Confidence 45566666665555 777788888888888877554 445555566666655 67789999
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+|++|...+.. ..-..++...|++|..+|++|...
T Consensus 75 lGnA~ts~A~l---------~~d~~~A~~~F~kA~~~FqkAv~~ 109 (186)
T PF06552_consen 75 LGNAYTSLAFL---------TPDTAEAEEYFEKATEYFQKAVDE 109 (186)
T ss_dssp HHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhh---------cCChHHHHHHHHHHHHHHHHHHhc
Confidence 99999998861 111334556677777777777765
|
Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A. |
| >KOG1839|consensus | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.014 Score=66.75 Aligned_cols=192 Identities=18% Similarity=0.135 Sum_probs=145.2
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CC
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--ND 135 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d 135 (609)
+.-....|......|.+.+|.+ .-+++.+.... .-.+..+..|..++.++...|++++|+.+..++.-+.... .+
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~d 1010 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKD 1010 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCC
Confidence 3344566777777888888888 66666665532 1256778999999999999999999999999998777665 36
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHc
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~ 213 (609)
.......+.+++...+..++ ...|+..+.+++.+..-. .+.|..+.+..+++.++...
T Consensus 1011 s~~t~~~y~nlal~~f~~~~--------------------~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v 1070 (1236)
T KOG1839|consen 1011 SPNTKLAYGNLALYEFAVKN--------------------LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGV 1070 (1236)
T ss_pred CHHHHHHhhHHHHHHHhccC--------------------ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhH
Confidence 67788899999988888887 778888888877664322 35677788889999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 214 GNFKQAIYYHQERLKIAREFGD--KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 214 g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
++++.|+.+.+.|+.+...... ....+..+..+++++...+++..|....+....++..
T Consensus 1071 ~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~ 1131 (1236)
T KOG1839|consen 1071 EEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKE 1131 (1236)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHH
Confidence 9999999999999997666433 2333556666777777777777777766666665554
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.56 Score=48.17 Aligned_cols=132 Identities=10% Similarity=-0.034 Sum_probs=98.9
Q ss_pred hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH-HHHHh-
Q psy10738 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI-IAQQL- 313 (609)
Q Consensus 236 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~-~~~~~- 313 (609)
....+..+..++.+....|.++.|..++.++.......... ...+....+.+....|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 45556788999999999999999999999877654322211 345667788999999999999999988887 22211
Q ss_pred --------------------------cchhhHHHHHHHHHHHHHHc------CChHHHHHHHHHHHHHHHHcCCCchHHH
Q psy10738 314 --------------------------MDRVGEGRACWSLGNAHAAR------GNHEKALYFATKHLEISKQLGDPLGQVT 361 (609)
Q Consensus 314 --------------------------~~~~~~~~~~~~La~~~~~~------g~~~~A~~~~~~al~l~~~~~~~~~~~~ 361 (609)
......+.++..+|...... +..+++...|.++..+. +....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~------~~~~k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLD------PSWEK 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhC------hhHHH
Confidence 12344567888888888888 88999999999999876 44456
Q ss_pred HHHHHHHHHHHcCC
Q psy10738 362 AQMNVTDLRKALGM 375 (609)
Q Consensus 362 a~~~la~l~~~~g~ 375 (609)
++..+|..+..+-.
T Consensus 294 ~~~~~a~~~~~~~~ 307 (352)
T PF02259_consen 294 AWHSWALFNDKLLE 307 (352)
T ss_pred HHHHHHHHHHHHHH
Confidence 77778877765543
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease [] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.41 Score=46.53 Aligned_cols=35 Identities=11% Similarity=0.296 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
+-+.+..+|+..|+...|+.-++.-+...+..-+.
T Consensus 12 i~~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~ 46 (247)
T PF11817_consen 12 IAFKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGR 46 (247)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 45667788999999999999999988887766433
|
Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats. |
| >KOG1550|consensus | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.11 Score=56.81 Aligned_cols=268 Identities=20% Similarity=0.193 Sum_probs=165.8
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL-----GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
+...|..+++.+-+.+- ......+|.+|..- .+.+.|+.+++.+..-.++.. ......+.+.+|.+|.
T Consensus 227 ~~~~a~~~~~~~a~~g~------~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a-~~~~~~a~~~lg~~Y~ 299 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKLGH------SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA-TKGLPPAQYGLGRLYL 299 (552)
T ss_pred hhhHHHHHHHHHHhhcc------hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH-hhcCCccccHHHHHHh
Confidence 45678888888877653 33566777777654 589999999999987211110 1113457888999998
Q ss_pred HcC-----CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 112 VMG-----KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 112 ~~g-----~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
... ++..|+.+|.++-+. ....+.+.+|.+|..-.. .+++..|..+|..|
T Consensus 300 ~g~~~~~~d~~~A~~~~~~aA~~--------g~~~a~~~lg~~~~~g~~-----------------~~d~~~A~~yy~~A 354 (552)
T KOG1550|consen 300 QGLGVEKIDYEKALKLYTKAAEL--------GNPDAQYLLGVLYETGTK-----------------ERDYRRAFEYYSLA 354 (552)
T ss_pred cCCCCccccHHHHHHHHHHHHhc--------CCchHHHHHHHHHHcCCc-----------------cccHHHHHHHHHHH
Confidence 853 677899998887665 345688899998887650 11388999999887
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CCHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASE 261 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~ 261 (609)
... ....+.+.+|.+|.. .-+...|..+++++.+... .. +...++..+... +.+..+.-
T Consensus 355 a~~--------G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~------A~~~~~~~~~~g~~~~~~~~~ 418 (552)
T KOG1550|consen 355 AKA--------GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PS------AAYLLGAFYEYGVGRYDTALA 418 (552)
T ss_pred HHc--------CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hh------hHHHHHHHHHHccccccHHHH
Confidence 653 234577888888764 3478899999999876531 11 334444443332 66666666
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc----
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR---- 333 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~---- 333 (609)
.+.......-+.. ...+..+.......... .+...+...+.++.. .+...+...||.+|..-
T Consensus 419 ~~~~~a~~g~~~~--q~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~a~~--------~g~~~a~~~lgd~y~~g~g~~ 488 (552)
T KOG1550|consen 419 LYLYLAELGYEVA--QSNAAYLLDQSEEDLFSRGVISTLERAFSLYSRAAA--------QGNADAILKLGDYYYYGLGTG 488 (552)
T ss_pred HHHHHHHhhhhHH--hhHHHHHHHhccccccccccccchhHHHHHHHHHHh--------ccCHHHHhhhcceeeecCCCC
Confidence 5554443332210 00111111111111111 134455555554432 22345778888888754
Q ss_pred CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 334 GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 334 g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
.+++.|...|..|..-. ..+..+++-.+.
T Consensus 489 ~d~~~a~~~y~~a~~~~---------~~~~~nlg~~~e 517 (552)
T KOG1550|consen 489 RDPEKAAAQYARASEQG---------AQALFNLGYMHE 517 (552)
T ss_pred CChHHHHHHHHHHHHhh---------hHHHhhhhhHHh
Confidence 35889999988887632 677777777664
|
|
| >PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.013 Score=55.23 Aligned_cols=98 Identities=19% Similarity=0.219 Sum_probs=73.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc-------chhhHHHHHH
Q psy10738 253 LGEYQAASEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM-------DRVGEGRACW 324 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-------~~~~~~~~~~ 324 (609)
...+++|++.|.-|+-...-.+ .+...+..+..+|++|...|+.+....++++|+....+.- .......+.+
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3456777777777776666444 4446778888888888888887777777777776665431 1334567888
Q ss_pred HHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 325 SLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 325 ~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.+|.++.+.|++++|..+|.+.+...
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 99999999999999999999988754
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0031 Score=40.78 Aligned_cols=32 Identities=38% Similarity=0.618 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
++.+||.+|...|+|++|+.+|++++.+....
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~ 32 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDP 32 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc
Confidence 35666777777777777777777766655543
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.0012 Score=42.01 Aligned_cols=34 Identities=29% Similarity=0.643 Sum_probs=30.3
Q ss_pred HHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 44 FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ 81 (609)
Q Consensus 44 ~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~ 81 (609)
+|++||+++|+++. +|+++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~----a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE----AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH----HHHHHHHHHHHCcCHHhhcC
Confidence 47899999999955 99999999999999999863
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=96.80 E-value=0.0035 Score=40.53 Aligned_cols=30 Identities=23% Similarity=0.393 Sum_probs=17.2
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
+..||.+|..+|++++|+.+|++++.+..+
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 455666666666666666666666555543
|
|
| >COG2976 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.78 E-value=0.13 Score=46.69 Aligned_cols=99 Identities=23% Similarity=0.125 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
....++..+...|++++|+..++.++... .|......+-.+||.+...+|.+++|+..+... .+....+.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~-------~~~~w~~~ 160 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTI-------KEESWAAI 160 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-------ccccHHHH
Confidence 34567888899999999999999988653 335556778889999999999999998876532 23334566
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.....|.++...|+ -++|...|++++...
T Consensus 161 ~~elrGDill~kg~--------------------k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 161 VAELRGDILLAKGD--------------------KQEARAAYEKALESD 189 (207)
T ss_pred HHHHhhhHHHHcCc--------------------hHHHHHHHHHHHHcc
Confidence 67788999999999 899999999988763
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0023 Score=40.72 Aligned_cols=31 Identities=39% Similarity=0.716 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.+|+++|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 3556666666666666666666666665543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.5 Score=56.75 Aligned_cols=265 Identities=14% Similarity=0.039 Sum_probs=166.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccC-----------------
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV----------------- 160 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~----------------- 160 (609)
..++....+|..+...|.+.+|+..|..|+.+.+..+|....+.++-.++.+....+......
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 446677789999999999999999999999999999999999999888877665544311000
Q ss_pred --CC--------C----------------CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 161 --GQ--------Q----------------DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 161 --~~--------~----------------~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
+. . +...++......+++|+.+|.++.....+..-......+....+.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 00 0 012345567778889999998887554444333445566667777776666
Q ss_pred --------------------CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-c
Q psy10738 215 --------------------NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-L 273 (609)
Q Consensus 215 --------------------~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~-~ 273 (609)
.-.++..++.+++.+....-........|..+|.+|...|-..++.-+++.++...-. .
T Consensus 400 ~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~~~l 479 (1185)
T PF08626_consen 400 LSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLVPGL 479 (1185)
T ss_pred cccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcccc
Confidence 6778888888888876655566677889999999999999988888788777665532 2
Q ss_pred CC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh---c-chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 274 GD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL---M-DRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 274 ~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~---~-~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
.+ .......+..+...|--..+.+.- ...... + .......++..+-.+..++|++..+..+.-..+.
T Consensus 480 ~~~~~s~~~lL~~~~~~Ygi~~~~~~~--------~~~~~~~~~~~W~~LQi~vL~~~I~~ae~l~D~~~~~~~~~~LL~ 551 (1185)
T PF08626_consen 480 IHWHQSYRSLLEELCKGYGISLDPESS--------SEDSSKGSQSNWPSLQIDVLKECINIAEALGDFAGVLRFSSLLLR 551 (1185)
T ss_pred CCcchHHHHHHHHHhccCcccCCcccc--------ccccccccccCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 11 111111222233333221111110 000000 0 2223344555566667778888888877777666
Q ss_pred HHHHcCCCchHHHHHHHHHHHH
Q psy10738 349 ISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 349 l~~~~~~~~~~~~a~~~la~l~ 370 (609)
.+-..-....+.+....+....
T Consensus 552 ~~~~~Ls~~EQ~~L~~~l~~~~ 573 (1185)
T PF08626_consen 552 TYSPLLSPDEQIRLANNLQRTS 573 (1185)
T ss_pred HHhhhCCHHHHHHHHHHHHHHh
Confidence 6544444444555555544444
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.60 E-value=0.0034 Score=39.87 Aligned_cols=31 Identities=35% Similarity=0.561 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++++|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p 32 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence 4566666667777777777777766666544
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=96.55 E-value=1.5 Score=47.27 Aligned_cols=63 Identities=10% Similarity=0.082 Sum_probs=35.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHH-----HHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLT-----LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~-----~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 125 (609)
.+.|..++......-.++.|...|-+.-. +.++++. ...--...+.+-..-|+|++|.+.|-.
T Consensus 692 prLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~---i~s~~~q~aei~~~~g~feeaek~yld 759 (1189)
T KOG2041|consen 692 PRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRT---IHSKEQQRAEISAFYGEFEEAEKLYLD 759 (1189)
T ss_pred hHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhh---hhhHHHHhHhHhhhhcchhHhhhhhhc
Confidence 55788888888777777777776655422 1111110 000112234445556888888877753
|
|
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.038 Score=42.12 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
...+.+|..++...+.++|+..++++++..++.+ ..-.++-.+..+|...|+|.+++.+...-++++++.+++
T Consensus 7 k~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 7 KQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-DRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3456678888899999999999999998877644 356677888888889999999999888888888776653
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.54 E-value=0.51 Score=45.44 Aligned_cols=153 Identities=16% Similarity=0.016 Sum_probs=107.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 286 (609)
+..-.....-++-++-+.+.++-.+..+.....+.++.++|..|...++.+.+.+++.+.+.-+...+-......+...+
T Consensus 82 ~~~n~l~kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRl 161 (412)
T COG5187 82 GRMNTLLKKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRL 161 (412)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHH
Confidence 33333445556677778777777776665666788999999999999999999999999998887777666666666777
Q ss_pred HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHH
Q psy10738 287 GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTA 362 (609)
Q Consensus 287 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a 362 (609)
|.+|..+. -..+.++.+-.+.++-++.....+.-...|.......++.+|...+-..+..+.+..-.+....+
T Consensus 162 g~~y~d~~---vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~sY~~~v 234 (412)
T COG5187 162 GLIYGDRK---VVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELISYSRAV 234 (412)
T ss_pred HHhhccHH---HHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccccHHHHH
Confidence 77775443 33344445555556666655555555566777778889999998888888777665544433333
|
|
| >KOG0545|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.032 Score=52.15 Aligned_cols=104 Identities=21% Similarity=0.204 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc------CCh------hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM------EDK------LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHL 127 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------~d~------~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 127 (609)
..++..-|+-++..|+|.+|...|..|+...+.+ +++ ....-.+.|.+.|+...|+|-++++++...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 4567889999999999999999999999887754 111 1124567889999999999999999999988
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 128 ~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
...+ ....+|+..|..+...-+ ..+|..-+.+++++
T Consensus 258 ~~~~------~nvKA~frRakAhaa~Wn--------------------~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RHHP------GNVKAYFRRAKAHAAVWN--------------------EAEAKADLQKVLEL 293 (329)
T ss_pred hcCC------chHHHHHHHHHHHHhhcC--------------------HHHHHHHHHHHHhc
Confidence 8776 778899999999998888 89999999988887
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.033 Score=58.25 Aligned_cols=99 Identities=23% Similarity=0.077 Sum_probs=83.0
Q ss_pred HHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHH
Q psy10738 242 ANSNLGNS-HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG 320 (609)
Q Consensus 242 ~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 320 (609)
...|+|-+ +...|+...|+.++..|+...+... .....+||.+..+.|-...|-.++.+++.+.-.- .
T Consensus 608 ~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~-----~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~se------p 676 (886)
T KOG4507|consen 608 LILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQ-----DVPLVNLANLLIHYGLHLDATKLLLQALAINSSE------P 676 (886)
T ss_pred EEeecccceeeecCCcHHHHHHHHHHhccChhhh-----cccHHHHHHHHHHhhhhccHHHHHHHHHhhcccC------c
Confidence 33444444 4568999999999999998877642 3356789999999999999999999999998884 4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
..++.+|++|..+.+.+.|++.+++|+....
T Consensus 677 l~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~ 707 (886)
T KOG4507|consen 677 LTFLSLGNAYLALKNISGALEAFRQALKLTT 707 (886)
T ss_pred hHHHhcchhHHHHhhhHHHHHHHHHHHhcCC
Confidence 4889999999999999999999999999984
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=96.37 E-value=0.0041 Score=63.67 Aligned_cols=98 Identities=14% Similarity=0.203 Sum_probs=89.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++..+|..++..++|+.|+..|.+||+++|+. +.++...+.++...++|..|+.-+.+|+++ .+....+|
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnc----a~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y 75 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNC----AIYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAY 75 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcc----eeeechhhhhheeechhhhHHHHHHhhhhc------Cchhhhee
Confidence 45567888999999999999999999999986 446777889999999999999999999999 79999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+..|.+....+.+.+|+..|+....+.+
T Consensus 76 ~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 76 VRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred eeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 9999999999999999999999888877
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.005 Score=39.01 Aligned_cols=29 Identities=41% Similarity=0.755 Sum_probs=17.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
++..+|.++...|++++|+.++++++.+.
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 45566666666666666666666666554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.36 E-value=0.0072 Score=41.08 Aligned_cols=41 Identities=22% Similarity=0.312 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
++..+|.+|...|++++|+..|+++++. .|....++..+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCCHHHHHHhhh
Confidence 5667777777777777777777777776 5666666666653
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.34 E-value=0.14 Score=45.13 Aligned_cols=75 Identities=23% Similarity=0.173 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH-HcCCCch
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK-QLGDPLG 358 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~-~~~~~~~ 358 (609)
..+...++..+...|++++|+..+++++.+.+- .-.++..+..+|...|++.+|+..|++...... ++|..+.
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~------~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps 135 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPY------DEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPS 135 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-------HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcC
Confidence 446677888999999999999999999987654 345889999999999999999999999987776 5676655
Q ss_pred HH
Q psy10738 359 QV 360 (609)
Q Consensus 359 ~~ 360 (609)
..
T Consensus 136 ~~ 137 (146)
T PF03704_consen 136 PE 137 (146)
T ss_dssp HH
T ss_pred HH
Confidence 43
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=96.32 E-value=2 Score=46.06 Aligned_cols=107 Identities=15% Similarity=0.112 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
.+-.++.+-|.-.+...+|..++++|...+............+....+++.||..+.+.+.|.+++++|-+..++
T Consensus 352 ~iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~----- 426 (872)
T KOG4814|consen 352 CIHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQ----- 426 (872)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccc-----
Confidence 344566777888889999999999999999887765555666899999999999999999999999999887652
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.......+-.+....|. -++|+..........
T Consensus 427 -~~l~q~~~~~~~~~E~~--------------------Se~AL~~~~~~~s~~ 458 (872)
T KOG4814|consen 427 -SPLCQLLMLQSFLAEDK--------------------SEEALTCLQKIKSSE 458 (872)
T ss_pred -cHHHHHHHHHHHHHhcc--------------------hHHHHHHHHHHHhhh
Confidence 23333444455555666 677777776665544
|
|
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=96.30 E-value=0.0067 Score=38.40 Aligned_cols=31 Identities=26% Similarity=0.442 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++.+|.++...|++++|+.+|++++.+.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p 32 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDP 32 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCc
Confidence 4556666666666666666666666666543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.24 E-value=0.72 Score=47.11 Aligned_cols=202 Identities=16% Similarity=0.166 Sum_probs=120.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCh--hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDK--LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~--~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.+..+...+.+.+...+..-|. ...+.+..++=..|....+|+.-+...+..-.+ +.. +......+....|.++..
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~-p~~-~~~~~~~i~~~yafALnR 191 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL-PTC-DVANQHNIKFQYAFALNR 191 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc-Ccc-chhcchHHHHHHHHHHhh
Confidence 3444444444555544433222 223556667777788888888777776654333 111 122344566677778887
Q ss_pred ---cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc---------CCHHHHH
Q psy10738 153 ---KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL---------GNFKQAI 220 (609)
Q Consensus 153 ---~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~ 220 (609)
.|+ .++|+..+..++.-. ......++..+|.+|-.. ...++|+
T Consensus 192 rn~~gd--------------------re~Al~il~~~l~~~-----~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 192 RNKPGD--------------------REKALQILLPVLESD-----ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred cccCCC--------------------HHHHHHHHHHHHhcc-----CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 777 899999888764431 222345677777777542 2367788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH-HHHH---Hc--CCcHHHHHHHHHHHHHHHHhC
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL-VLAQ---DL--GDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al-~~~~---~~--~~~~~~~~~~~~la~~~~~~g 294 (609)
.+|.++.++.+.. ..-.|++.++...|.-.+....+.+.. .+.. .. .+.....+.+-.++.+....|
T Consensus 247 ~~Y~kgFe~~~~~-------Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~ 319 (374)
T PF13281_consen 247 EWYRKGFEIEPDY-------YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAG 319 (374)
T ss_pred HHHHHHHcCCccc-------cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcC
Confidence 8888887765322 134566777777775443333333322 2221 11 122233455566778888899
Q ss_pred CHHHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIA 310 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~ 310 (609)
++++|+.++++++...
T Consensus 320 d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 320 DYEKAIQAAEKAFKLK 335 (374)
T ss_pred CHHHHHHHHHHHhhcC
Confidence 9999999999988764
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.46 Score=53.21 Aligned_cols=193 Identities=16% Similarity=0.132 Sum_probs=108.9
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
....+|..+|.+....|...+|++.|-+|-+ ...|...-.+....|. |+
T Consensus 1102 n~p~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~~--------------------~e 1150 (1666)
T KOG0985|consen 1102 NEPAVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTGK--------------------YE 1150 (1666)
T ss_pred CChHHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcCc--------------------HH
Confidence 3466788899999999999999888876532 2245555666677777 88
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHH---------------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACG---------------------NLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~---------------------~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (609)
+-+.|+..+.+-.++..-......+|. ..|.-++..|.|+.|.-+|...
T Consensus 1151 dLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------- 1220 (1666)
T KOG0985|consen 1151 DLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------- 1220 (1666)
T ss_pred HHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHHh----------
Confidence 888887777665444322222222221 2233333344444443333221
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHc----------------C-CcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDL----------------G-DRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~----------------~-~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
.-+..++..+..+|+|..|....++|-..- +.. + +....+.-+-.+...|...|-++
T Consensus 1221 ----SN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFe 1296 (1666)
T KOG0985|consen 1221 ----SNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFE 1296 (1666)
T ss_pred ----hhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHH
Confidence 134567777888888888887777653321 111 0 00011233445666777777777
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
+-+..++.++-+-+. ....+..||.+|.+- ++++-.++
T Consensus 1297 ElIsl~Ea~LGLERA------HMgmfTELaiLYsky-kp~km~EH 1334 (1666)
T KOG0985|consen 1297 ELISLLEAGLGLERA------HMGMFTELAILYSKY-KPEKMMEH 1334 (1666)
T ss_pred HHHHHHHhhhchhHH------HHHHHHHHHHHHHhc-CHHHHHHH
Confidence 777777776655433 233555666666543 44444444
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.19 E-value=0.013 Score=39.80 Aligned_cols=39 Identities=13% Similarity=0.181 Sum_probs=33.2
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGN 68 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~ 68 (609)
...|..+...|++++|+..|+++++..|+++. ++..+|.
T Consensus 5 ~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~----a~~~La~ 43 (44)
T PF13428_consen 5 LALARAYRRLGQPDEAERLLRRALALDPDDPE----AWRALAQ 43 (44)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH----HHHHhhh
Confidence 45689999999999999999999999999965 5666653
|
|
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.69 Score=45.36 Aligned_cols=146 Identities=14% Similarity=0.016 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH
Q psy10738 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 296 (609)
++-++-+.+.++-+.++........++.+.|..|...|+-+.|.+.+.+..+-.-..+.......+...+|..|. +.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~---D~ 157 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL---DH 157 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc---cH
Confidence 444556666666666655555667799999999999999999999999998887777777667777777787774 44
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHH
Q psy10738 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMN 365 (609)
Q Consensus 297 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~ 365 (609)
+--.+..++|-.+.++-+|.....+.-..-|.......++.+|...|-.++..+.+..-.+...-+.+.
T Consensus 158 ~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~El~~Y~~~v~Yt 226 (393)
T KOG0687|consen 158 DLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYELMSYETFVRYT 226 (393)
T ss_pred HHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccccceecccHHHHHHHH
Confidence 555556667777777777766666666666777788889999999998888877666544444444433
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.04 E-value=0.0057 Score=38.90 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 82 ~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
+|++++++ .|..+.+++++|.+|...|++++|+
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788888 8999999999999999999999986
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.016 Score=36.72 Aligned_cols=31 Identities=32% Similarity=0.608 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.++..+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 3556666666666666666666666666544
|
... |
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=95.96 E-value=0.017 Score=36.54 Aligned_cols=31 Identities=29% Similarity=0.540 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++.+|.+|..+|++++|+.+|++++++.+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 4566667777777777777777776666654
|
... |
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.0033 Score=61.47 Aligned_cols=94 Identities=14% Similarity=0.252 Sum_probs=85.3
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
.++...+..|.+++|++.|..++.++|.. +.+|...+.++..+++...|+..|..++.+ ++..+.-|-..
T Consensus 119 ~~A~eAln~G~~~~ai~~~t~ai~lnp~~----a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfr 188 (377)
T KOG1308|consen 119 VQASEALNDGEFDTAIELFTSAIELNPPL----AILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFR 188 (377)
T ss_pred HHHHHHhcCcchhhhhcccccccccCCch----hhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccccchh
Confidence 34777889999999999999999999975 558889999999999999999999999999 88888889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
|.....+|++.+|...+..+.++.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld 212 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLD 212 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhcc
Confidence 999999999999999999888763
|
|
| >PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway | Back alignment and domain information |
|---|
Probab=95.88 E-value=1.6 Score=52.68 Aligned_cols=167 Identities=15% Similarity=0.172 Sum_probs=102.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-----------------------
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG----------------------- 114 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g----------------------- 114 (609)
..++..-.+|..+...|.+.+|+..|..|+..++..+|....+.++-.++.+....+
T Consensus 240 ~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~~ 319 (1185)
T PF08626_consen 240 CKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSSTS 319 (1185)
T ss_pred hhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCccC
Confidence 345667778888888888888888888888888888888777777766655433221
Q ss_pred ----------------------------------------CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 115 ----------------------------------------KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 115 ----------------------------------------~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
.+++|+.+|.++.....+.........+...++.++....
T Consensus 320 ~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~~ 399 (1185)
T PF08626_consen 320 SSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQH 399 (1185)
T ss_pred ccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHhh
Confidence 1334444454443222222222244555555666555554
Q ss_pred c------ccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 155 K------AIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 155 ~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
. .+. ....+.... . .-.++..+..+++.+....-+.......|..+|.+|..+|-..++.-+++.++.
T Consensus 400 ~~~~l~~iV~--~~~~~~~~~---~-~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~ 473 (1185)
T PF08626_consen 400 LSDNLDHIVK--RPLTPTPNI---S-SRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAV 473 (1185)
T ss_pred cccchhhhhc--cccccccCC---C-CHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHH
Confidence 0 000 000000000 0 156667777777766544445677789999999999999999988888888776
Q ss_pred HH
Q psy10738 229 IA 230 (609)
Q Consensus 229 ~~ 230 (609)
..
T Consensus 474 ~~ 475 (1185)
T PF08626_consen 474 QL 475 (1185)
T ss_pred Hh
Confidence 55
|
To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways []. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.86 E-value=0.098 Score=51.95 Aligned_cols=63 Identities=10% Similarity=0.057 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
..+...|+.+.|...|++++... ........+|......-...|+.+......+++.+..+..
T Consensus 78 ~~l~~~~d~~~aR~lfer~i~~l---~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 78 DFLIKLNDINNARALFERAISSL---PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHHTT-HHHHHHHHHHHCCTS---SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHHhCcHHHHHHHHHHHHHhc---CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 33344444444444444444331 1111111244444444455555555556666655555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.28 Score=50.00 Aligned_cols=169 Identities=18% Similarity=0.167 Sum_probs=107.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY---LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|....+|+.-+.+.+..-.....+......+-...|.++.. .|+.++|+..+..++... ....++.+..+|
T Consensus 150 SyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~-----~~~~~d~~gL~G 224 (374)
T PF13281_consen 150 SYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESD-----ENPDPDTLGLLG 224 (374)
T ss_pred HhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhcc-----CCCChHHHHHHH
Confidence 455667888888887776555322222234467788888888 899999999998875441 344566788888
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 108 NTLKVM---------GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 108 ~~~~~~---------g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+|... ...++|+.+|.++.++.+. ...-.|++.++...|.. +..
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~-------~Y~GIN~AtLL~~~g~~-------------------~~~ 278 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPD-------YYSGINAATLLMLAGHD-------------------FET 278 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcc-------ccchHHHHHHHHHcCCc-------------------ccc
Confidence 887653 2367888888888776541 12334667777777761 111
Q ss_pred HHHHHHHHHHH---H--HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLAL---M--KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 179 A~~~~~~al~~---~--~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
..+.-+-.+.+ . +...+.....+.+..++.+....|++++|+..+++++...
T Consensus 279 ~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~ 335 (374)
T PF13281_consen 279 SEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLK 335 (374)
T ss_pred hHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence 11111111111 1 1112233445666777888888999999999999998764
|
|
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.98 Score=45.10 Aligned_cols=186 Identities=25% Similarity=0.286 Sum_probs=120.4
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
....+++..|...+.++-.. ....+...++.+|..-.- +..+..+|..+|..+.+
T Consensus 51 ~~~~~~~~~a~~~~~~a~~~--------~~~~a~~~l~~~y~~g~g----------------v~~~~~~A~~~~~~~a~- 105 (292)
T COG0790 51 SAYPPDYAKALKSYEKAAEL--------GDAAALALLGQMYGAGKG----------------VSRDKTKAADWYRCAAA- 105 (292)
T ss_pred ccccccHHHHHHHHHHhhhc--------CChHHHHHHHHHHHhccC----------------ccccHHHHHHHHHHHhh-
Confidence 34556777777777766551 112567777877776443 22237888888874432
Q ss_pred HHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-------CHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG-------EYQA 258 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-------~~~~ 258 (609)
.....+.+++|.+|.. ..++.+|..+|.++...- .... ..+.+.+|.+|..-. +...
T Consensus 106 -------~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g----~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~ 173 (292)
T COG0790 106 -------DGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLG----NVEA-ALAMYRLGLAYLSGLQALAVAYDDKK 173 (292)
T ss_pred -------cccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcC----ChhH-HHHHHHHHHHHHcChhhhcccHHHHh
Confidence 2234577778888887 448899999999887642 2111 234677777776542 2336
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
|..+|.++-... ...+...+|.+|.. ..++.+|..+|.++.+.- + ...++.++ ++...|
T Consensus 174 A~~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g----~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 174 ALYLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQG----D----GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----C----HHHHHHHH-HHHhcC
Confidence 777777766544 35678888888865 348999999999987542 2 45777777 666555
Q ss_pred ---------------ChHHHHHHHHHHHHH
Q psy10738 335 ---------------NHEKALYFATKHLEI 349 (609)
Q Consensus 335 ---------------~~~~A~~~~~~al~l 349 (609)
+...|..++.++...
T Consensus 237 ~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 266 (292)
T COG0790 237 EGVKKAAFLTAAKEEDKKQALEWLQKACEL 266 (292)
T ss_pred CCchhhhhcccccCCCHHHHHHHHHHHHHc
Confidence 666677766665543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=95.82 E-value=0.062 Score=53.36 Aligned_cols=136 Identities=9% Similarity=-0.054 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
+|..+.....+.+..+.|...|.+|++. .. ....+|...|.+... .++.+.|...|+.+++..+.. .
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~----~~--~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~------~ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKD----KR--CTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSD------P 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCC----CC--S-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-------H
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcC----CC--CCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCC------H
Confidence 4555666666777789999999998631 11 112367778888666 566677999999999887653 4
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
..+......+...|+.+.|...|++++.... .......+|......-...|+.+......+++.++..+
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~---~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~ 139 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISSLP---KEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE 139 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCTSS---CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcC---chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence 5566666788899999999999999986522 22213456777778888889999999998888887643
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.68 E-value=0.69 Score=46.20 Aligned_cols=177 Identities=22% Similarity=0.201 Sum_probs=118.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL----GDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+......+++..|...+..+-.... ......++.+|... .+..+|..+|..+.+ ...+.+.+
T Consensus 48 ~~~~~~~~~~~~a~~~~~~a~~~~~------~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~--------~g~~~a~~ 113 (292)
T COG0790 48 GAGSAYPPDYAKALKSYEKAAELGD------AAALALLGQMYGAGKGVSRDKTKAADWYRCAAA--------DGLAEALF 113 (292)
T ss_pred cccccccccHHHHHHHHHHhhhcCC------hHHHHHHHHHHHhccCccccHHHHHHHHHHHhh--------cccHHHHH
Confidence 3444566788899999988876332 13566777777653 467888888884433 34566788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 105 NLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 105 ~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+|.+|.. ..++.+|..+|.++.+.-. ... ..+.+.+|.+|..-.. ...+..+...|.
T Consensus 114 ~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~----~~a-~~~~~~l~~~~~~g~~-------------~~~~~~~~~~A~ 175 (292)
T COG0790 114 NLGLMYANGRGVPLDLVKALKYYEKAAKLGN----VEA-ALAMYRLGLAYLSGLQ-------------ALAVAYDDKKAL 175 (292)
T ss_pred hHHHHHhcCCCcccCHHHHHHHHHHHHHcCC----hhH-HHHHHHHHHHHHcChh-------------hhcccHHHHhHH
Confidence 89999887 4589999999999877532 111 4457788888776421 011112245788
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
.+|.++-... ...+..++|.+|.. ..++.+|..+|.++-+. ++ ..+.+.++ ++...|
T Consensus 176 ~~~~~aa~~~--------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~----g~----~~a~~~~~-~~~~~g 236 (292)
T COG0790 176 YLYRKAAELG--------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ----GD----GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHhc--------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHH-HHHhcC
Confidence 8888776653 35678888877765 34889999999998764 22 23677777 666555
|
|
| >KOG0687|consensus | Back alignment and domain information |
|---|
Probab=95.57 E-value=1.7 Score=42.80 Aligned_cols=134 Identities=11% Similarity=0.079 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH
Q psy10738 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197 (609)
Q Consensus 118 ~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 197 (609)
+-++-+.+.++-+.+.........++.+.|..|...|+ -+.|.+.+.+..+-.-..+...
T Consensus 82 eki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigD--------------------kena~~~~~~t~~ktvs~g~ki 141 (393)
T KOG0687|consen 82 EKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGD--------------------KENALEALRKTYEKTVSLGHKI 141 (393)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHhhcccch
Confidence 34445555555555444445677889999999999999 8999998888887777777777
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q psy10738 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 274 (609)
........+|..|. +.+--.+..+++-.+..+.+|....-+.-..-|.......++.+|...|-.++..+....
T Consensus 142 DVvf~~iRlglfy~---D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 142 DVVFYKIRLGLFYL---DHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred hhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 77777777777764 555666667777777778888776666666778788888899999999888877665543
|
|
| >COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.43 E-value=2.4 Score=41.03 Aligned_cols=137 Identities=13% Similarity=0.028 Sum_probs=95.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
..-++-++-+.+.++-.+..+.......++.++|..|...++ .+.+.+...+.+.-+...
T Consensus 89 kkneeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D--------------------~~ng~~~~~~~~~~a~st 148 (412)
T COG5187 89 KKNEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMD--------------------IQNGFEWMRRLMRDAMST 148 (412)
T ss_pred HhhHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhh--------------------hhhHHHHHHHHHHHHHhc
Confidence 334556666766666666655566778899999999999998 888888888887777666
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
+-......+-..+|.+|. +-.-..+.++.+-.+..+.++....-+.-...|...+...++.+|...+...+..+...
T Consensus 149 g~KiDv~l~kiRlg~~y~---d~~vV~e~lE~~~~~iEkGgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~ 225 (412)
T COG5187 149 GLKIDVFLCKIRLGLIYG---DRKVVEESLEVADDIIEKGGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESS 225 (412)
T ss_pred ccchhhHHHHHHHHHhhc---cHHHHHHHHHHHHHHHHhCCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccccc
Confidence 666666566666676664 43444445555556666667766555566667777777888888888887777665544
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=95.35 E-value=7.5 Score=48.30 Aligned_cols=68 Identities=10% Similarity=-0.053 Sum_probs=53.4
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 275 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
.....+.+|...|.+....|.++.|..++-+|.+.. ...++...|..++..|+...|+..+++.++..
T Consensus 1665 ~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1665 LKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence 345567888888888888888888888887776543 34578888888888888888888888888655
|
|
| >KOG0985|consensus | Back alignment and domain information |
|---|
Probab=95.28 E-value=4.4 Score=45.89 Aligned_cols=208 Identities=14% Similarity=0.092 Sum_probs=105.0
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
-+..+.|.++.+++- . ..+|..+|.+....|...+|++.|-+|-. ...|...-.+....|
T Consensus 1088 i~~ldRA~efAe~~n-----~----p~vWsqlakAQL~~~~v~dAieSyikadD-----------ps~y~eVi~~a~~~~ 1147 (1666)
T KOG0985|consen 1088 IGSLDRAYEFAERCN-----E----PAVWSQLAKAQLQGGLVKDAIESYIKADD-----------PSNYLEVIDVASRTG 1147 (1666)
T ss_pred hhhHHHHHHHHHhhC-----C----hHHHHHHHHHHHhcCchHHHHHHHHhcCC-----------cHHHHHHHHHHHhcC
Confidence 455566655555431 1 23677777777777777777776654311 123444445555556
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHH---------------------HHHHHHHHHHHHHcccccccCCCCCCCCCchHhH
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSE---------------------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~---------------------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~ 173 (609)
.|++-+.++.-|.+..++..-.... ..-....|.-++..|.
T Consensus 1148 ~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~------------------ 1209 (1666)
T KOG0985|consen 1148 KYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKM------------------ 1209 (1666)
T ss_pred cHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhh------------------
Confidence 6666655555444433221110000 0012234555555555
Q ss_pred HhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHHh----CCh--HH-------
Q psy10738 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI--AREF----GDK--AA------- 238 (609)
Q Consensus 174 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~~~~----~~~--~~------- 238 (609)
|+.|.-.|.. ..-+..|+..+..+|+|..|....++|-.. .+.. -+. ..
T Consensus 1210 --y~aAkl~y~~--------------vSN~a~La~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL 1273 (1666)
T KOG0985|consen 1210 --YEAAKLLYSN--------------VSNFAKLASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGL 1273 (1666)
T ss_pred --hHHHHHHHHH--------------hhhHHHHHHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCc
Confidence 5555444432 123445666667777777777766665321 1110 000 00
Q ss_pred ----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 239 ----ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303 (609)
Q Consensus 239 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 303 (609)
.+.-+-.+...|...|-+++-+..++.++-+-+.. ...+..||.+|.+- ++++-.+++
T Consensus 1274 ~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH------MgmfTELaiLYsky-kp~km~EHl 1335 (1666)
T KOG0985|consen 1274 NIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH------MGMFTELAILYSKY-KPEKMMEHL 1335 (1666)
T ss_pred eEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH------HHHHHHHHHHHHhc-CHHHHHHHH
Confidence 01223445666777777777777777776655442 44555666665443 344443333
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=95.27 E-value=0.22 Score=40.96 Aligned_cols=95 Identities=16% Similarity=0.236 Sum_probs=65.6
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC----CHH-------HHHHHHHHHHHHHHHcCCh
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG----DYQ-------KAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g----~~~-------~A~~~~~~al~~~~~~~d~ 96 (609)
.|..++..|++-+|+++.+..+...+++.... .++...|.+++.+. +.+ .|++++.++..+ .
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~-~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L------s 74 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESSW-LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL------S 74 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCchH-HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc------C
Confidence 36778999999999999999999887665321 45666777776543 333 345555555555 6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
+..+..++.+|.-+...-.|+++...+++++.+
T Consensus 75 p~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 75 PDSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hhHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666777888887766666677777777666654
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=95.22 E-value=1.5 Score=46.29 Aligned_cols=178 Identities=12% Similarity=-0.027 Sum_probs=116.1
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH----
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF---- 216 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~---- 216 (609)
.....||.+++..|+ |+-|...|+.+.+-+...+-....+.++-..|.+....+..
T Consensus 209 ~q~R~LAD~aFml~D--------------------y~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k 268 (414)
T PF12739_consen 209 AQMRRLADLAFMLRD--------------------YELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAK 268 (414)
T ss_pred HHHHHHHHHHHHHcc--------------------HHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccc
Confidence 356689999999999 99999999988887655444555666777777777777743
Q ss_pred ---HHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHH
Q psy10738 217 ---KQAIYYHQERLKIAREF-----GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDLGDRAVEAQACYSL 286 (609)
Q Consensus 217 ---~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~l 286 (609)
+....+++.|+..+... .......++....+.++...|.+.+|...+-+..... .... ....+..+..+
T Consensus 269 ~~~~~~~~~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~ 347 (414)
T PF12739_consen 269 IRKDEIEPYLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEILESDLR-PFGSALLLEQA 347 (414)
T ss_pred cccccHHHHHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHH
Confidence 36777888887777662 2223445677778888888999888887776666542 1211 11134555566
Q ss_pred HHHH--HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 287 GNTY--TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 287 a~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
|.+| ........-..- ....+.-+..-|.-|...|+...|..+|.+|+.++..
T Consensus 348 a~~~~~~~~~~~~~~~~r-------------~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 348 AYCYASLRSNRPSPGLTR-------------FRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHhhcccccCCCCccchh-------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 6666 111000000000 0112223334478899999999999999999999863
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.21 Score=38.18 Aligned_cols=71 Identities=24% Similarity=0.307 Sum_probs=59.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 136 (609)
...-|.-++...+.++|+..++++++... +.+....++..+..+|...|+|.+++.+..+-++++.+.+++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~---~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKIT---DREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcC---ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 34456666788899999999999988643 366788899999999999999999999999999999887764
|
Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=95.15 E-value=0.054 Score=35.91 Aligned_cols=32 Identities=31% Similarity=0.486 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.++.++|.+|...|++++|+.++++++.+...
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 45666666666666666666666666666554
|
|
| >PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex [] | Back alignment and domain information |
|---|
Probab=95.08 E-value=2.2 Score=44.95 Aligned_cols=178 Identities=14% Similarity=0.022 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHc
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY-------DEAMVCCKRHLEISRQL 133 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~-------~~A~~~~~~al~l~~~~ 133 (609)
.....||..++.+|+|+.|...|+.+..-+.........+.++-..|.+....+.. ++...+++.|+..+...
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~ 288 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKS 288 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhh
Confidence 45678999999999999999999998887665554555677777777777777743 36777888887777662
Q ss_pred -----CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH--HhCChHHHHHHHHHH
Q psy10738 134 -----NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK--EINDTAAQGRACGNL 206 (609)
Q Consensus 134 -----~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~--~~~~~~~~~~~~~~l 206 (609)
.......++....+.++...|. +.+|...+-+.....- ... ....+..+-.+
T Consensus 289 ~~~~~~~~~~a~R~~ll~~ell~~~~~--------------------~~~a~~~~~~~~~~~l~~~l~-~~~~alllE~~ 347 (414)
T PF12739_consen 289 ALPRCSLPYYALRCALLLAELLKSRGG--------------------YWEAADQLIRWTSEILESDLR-PFGSALLLEQA 347 (414)
T ss_pred hccccccccchHHHHHHHHHHHHhcCc--------------------cHHHHHHHHHHHHHHHhhhhh-hHhhHHHHHHH
Confidence 2233556677778888888888 7777666655544311 111 01133344444
Q ss_pred HHHH--HHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 207 GNTY--YLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 207 g~~~--~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
|.+| ........-.. .....+.-+..-|.-|...|+...|..+|..++.+...
T Consensus 348 a~~~~~~~~~~~~~~~~-------------r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~~ 402 (414)
T PF12739_consen 348 AYCYASLRSNRPSPGLT-------------RFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYEG 402 (414)
T ss_pred HHhhcccccCCCCccch-------------hhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCC
Confidence 4444 11000000000 01112233444567788888888888888888877654
|
Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ]. |
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=94.79 E-value=0.077 Score=35.15 Aligned_cols=33 Identities=39% Similarity=0.427 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 321 RACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 321 ~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
.++.+||.+|...|++++|..++++++.+.+.+
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 466777778888888888888888877777665
|
|
| >KOG1914|consensus | Back alignment and domain information |
|---|
Probab=94.65 E-value=7.1 Score=41.31 Aligned_cols=157 Identities=10% Similarity=-0.038 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH-HHHHhC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN-SHIFLG 254 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~-~~~~~g 254 (609)
++....++++.+.+.... ...++.++-+.-.+..-...|...|.+|.+.-... . .++..-|. -|...+
T Consensus 347 ~~~~~~~~~~ll~~~~~~-----~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~----h--hVfVa~A~mEy~csk 415 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDID-----LTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTR----H--HVFVAAALMEYYCSK 415 (656)
T ss_pred hhhhHHHHHHHHhhhccC-----CceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCc----c--hhhHHHHHHHHHhcC
Confidence 455566666666553221 12244444444555555667777777765532221 1 12222222 255678
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
+.+-|...|+-.+....+. ...-......+...++-..|...|++++.. .-......++|...-..-...|
T Consensus 416 D~~~AfrIFeLGLkkf~d~------p~yv~~YldfL~~lNdd~N~R~LFEr~l~s---~l~~~ks~~Iw~r~l~yES~vG 486 (656)
T KOG1914|consen 416 DKETAFRIFELGLKKFGDS------PEYVLKYLDFLSHLNDDNNARALFERVLTS---VLSADKSKEIWDRMLEYESNVG 486 (656)
T ss_pred ChhHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhCcchhHHHHHHHHHhc---cCChhhhHHHHHHHHHHHHhcc
Confidence 9999999999888766542 223334445667888999999999998865 1122334456666666677778
Q ss_pred ChHHHHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEISKQ 352 (609)
Q Consensus 335 ~~~~A~~~~~~al~l~~~ 352 (609)
+...+++.-++-...++.
T Consensus 487 dL~si~~lekR~~~af~~ 504 (656)
T KOG1914|consen 487 DLNSILKLEKRRFTAFPA 504 (656)
T ss_pred cHHHHHHHHHHHHHhcch
Confidence 888777776666665553
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.41 E-value=2.5 Score=43.52 Aligned_cols=170 Identities=17% Similarity=-0.033 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHHH------HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC--------------
Q psy10738 176 LQEAIKYYEQNLALM------KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-------------- 235 (609)
Q Consensus 176 ~~~A~~~~~~al~~~------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------- 235 (609)
|.++...|..++... .-+...+....++..++.++..+|+++.|.+++++|+-.....-.
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 666666665555432 112234556789999999999999999999999999876653110
Q ss_pred ---------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 236 ---------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 236 ---------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
......+.......+...|-+..|.++.+-.+.+.+.. |+ ..+++.+-....+.++|+--+.+++..
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP---~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DP---LGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Cc---chhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 11223466667778889999999999999988887753 33 234444555566778888777777765
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCCh---------------HHHHHHHHHHHHHH
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNH---------------EKALYFATKHLEIS 350 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~---------------~~A~~~~~~al~l~ 350 (609)
....... .........+.++.++..+++. ++|...+.+|+..+
T Consensus 166 ~~~~~~~-~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 166 LAKCYRN-WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hhhhhhh-hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 4421100 0001224667788888888888 89999999999877
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG4814|consensus | Back alignment and domain information |
|---|
Probab=94.40 E-value=8.9 Score=41.38 Aligned_cols=108 Identities=15% Similarity=0.007 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....+++-|.-++...+|..++++|...+...+........+....+++.+|..+.+ +++
T Consensus 353 iH~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~Q--------------------LD~ 412 (872)
T KOG4814|consen 353 IHTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQ--------------------LDN 412 (872)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHH--------------------HHH
Confidence 345667778888889999999999999998777555455668899999999999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
|.+++++|-+.- +........+-.+....|+-++|+.+..+.......
T Consensus 413 A~E~~~EAE~~d------~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 413 AVEVYQEAEEVD------RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHHHHHhhc------cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 999999987762 222334444555666778889999988877665443
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=94.38 E-value=2.3 Score=45.56 Aligned_cols=50 Identities=4% Similarity=0.039 Sum_probs=27.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 208 NTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 208 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
.++...++|++|....++--++ ...+|+-.|..+....++++|.+.|.+|
T Consensus 781 qlHve~~~W~eAFalAe~hPe~---------~~dVy~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 781 QLHVETQRWDEAFALAEKHPEF---------KDDVYMPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred hheeecccchHhHhhhhhCccc---------cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence 3445566666665544332111 1125666666666777777776666554
|
|
| >PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ] | Back alignment and domain information |
|---|
Probab=94.22 E-value=3 Score=42.92 Aligned_cols=175 Identities=10% Similarity=-0.021 Sum_probs=108.7
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.|....++..++.++..+|++..|.+.+++|+-..... ....+..-..-...|. ... +
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~------~~~~F~~~~~~~~~g~--~rL----~---------- 93 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERA------FHPSFSPFRSNLTSGN--CRL----D---------- 93 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH------HHHHhhhhhcccccCc--ccc----C----------
Confidence 67778899999999999999999999999998776621 1111100000011111 000 0
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
|. ...+.....++..........|-+..|.++.+-.+.+.+.. |+.. +.+.+-...++.++
T Consensus 94 ~~---------------~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~-DP~g---~ll~ID~~ALrs~~ 154 (360)
T PF04910_consen 94 YR---------------RPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSLDPDE-DPLG---VLLFIDYYALRSRQ 154 (360)
T ss_pred Cc---------------cccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCC-Ccch---hHHHHHHHHHhcCC
Confidence 00 00122233455566677788999999999999988887653 3222 44445555667788
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH---------------HHHHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY---------------PTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~---------------~~A~~~~~~al~~~~~ 312 (609)
|+--++.++......... .........+..+.++...++- ++|...+.+|+...+.
T Consensus 155 y~~Li~~~~~~~~~~~~~-~~~~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~ 225 (360)
T PF04910_consen 155 YQWLIDFSESPLAKCYRN-WLSLLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW 225 (360)
T ss_pred HHHHHHHHHhHhhhhhhh-hhhhCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence 877777766544421100 0001234667777888888887 8999999999988876
|
Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions []. |
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=94.22 E-value=3.6 Score=41.80 Aligned_cols=124 Identities=15% Similarity=0.085 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
.+-++.-++..+....+.....++..+|.-|...|+++.|++.|-++-......+ .....+.++-.+-..+|+|..-
T Consensus 130 le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k---hvInm~ln~i~VSI~~~nw~hv 206 (466)
T KOG0686|consen 130 LEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK---HVINMCLNLILVSIYMGNWGHV 206 (466)
T ss_pred HHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH---HHHHHHHHHHHHHHhhcchhhh
Confidence 3444444555555555666788999999999999999999999999877765542 3566777888888889999988
Q ss_pred HHHHHHHHHHHHHhc--chhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLM--DRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 300 ~~~~~~al~~~~~~~--~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
..+..+|........ .......+...-|.+...+++|+.|..++-.+
T Consensus 207 ~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 207 LSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 888888876631100 01112234445556666677888888876554
|
|
| >PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function | Back alignment and domain information |
|---|
Probab=94.06 E-value=0.8 Score=37.72 Aligned_cols=104 Identities=12% Similarity=0.087 Sum_probs=61.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
.+.-++..|++-+|++..+..+....+..+ ....+..-|.++..++. ..+.|+-...-+-.|++.+.+
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~---~~~lh~~QG~if~~lA~---------~ten~d~k~~yLl~sve~~s~ 69 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDES---SWLLHRLQGTIFYKLAK---------KTENPDVKFRYLLGSVECFSR 69 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCc---hHHHHHHHhHHHHHHHH---------hccCchHHHHHHHHhHHHHHH
Confidence 356677888888888888887765543322 22566667777776665 223444455556677777777
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
+..+ .+..+..++.+|.-+-....|+++..-.++++
T Consensus 70 a~~L------sp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 70 AVEL------SPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred Hhcc------ChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 7766 34445566666554443344444444444443
|
|
| >PRK13184 pknD serine/threonine-protein kinase; Reviewed | Back alignment and domain information |
|---|
Probab=93.83 E-value=16 Score=42.34 Aligned_cols=105 Identities=11% Similarity=0.055 Sum_probs=82.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
..++.....|+.|+..|++.-..-|+-.+.. ++.+.+|......-.-..--+.+.+|+.......+.+...--|...|.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGY-EAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKAL 560 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccch-HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHH
Confidence 5667777899999999999998888654432 467778877766533333336788888888888778888888899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+|..+|+|++-+++|.-|++-+++..
T Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 586 (932)
T PRK13184 561 VYQRLGEYNEEIKSLLLALKRYSQHP 586 (932)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999998776543
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.83 E-value=3.3 Score=40.46 Aligned_cols=103 Identities=17% Similarity=0.237 Sum_probs=75.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHH---------------HHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ---------------DLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~---------------al~~ 89 (609)
.+.++..+...|++.+|...|..++...|++. .+...++.+|...|+.+.|...+.. -+++
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~----~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~l 212 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENS----EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIEL 212 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccc----hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34457788999999999999999999999874 4778899999999999888776643 1222
Q ss_pred HHHc-------------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 90 ARNM-------------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 90 ~~~~-------------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
..+. ...|....+-+.+|..+...|+.+.|++.+-..+....
T Consensus 213 l~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~ 267 (304)
T COG3118 213 LEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR 267 (304)
T ss_pred HHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 2222 12344566777888888888888888887766665544
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=93.67 E-value=0.079 Score=32.97 Aligned_cols=29 Identities=24% Similarity=0.318 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
+++.+|.++...|++++|+..+++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 44555555555555555555555555443
|
|
| >KOG0686|consensus | Back alignment and domain information |
|---|
Probab=93.61 E-value=7.1 Score=39.79 Aligned_cols=108 Identities=20% Similarity=0.300 Sum_probs=75.1
Q ss_pred cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 136 KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
+...-.++..+|.-|...|+ ++.|++.|-++...+... ...+..+.++-.+-..+|+
T Consensus 146 KEsiRra~~Dl~dhy~~cG~--------------------l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~n 202 (466)
T KOG0686|consen 146 KESIRRALEDLGDHYLDCGQ--------------------LDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGN 202 (466)
T ss_pred hHHHHHHHHHHHHHHHHhcc--------------------HHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcc
Confidence 34556788899999999999 999999998877776543 4456677788888888899
Q ss_pred HHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 216 FKQAIYYHQERLKIAREFGD--KAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 216 ~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
|..-..+..+|......... ......+...-|.+.+.+++|..|..++-.+
T Consensus 203 w~hv~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 203 WGHVLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhhhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 98888888887665311110 1111234455566666677888888887654
|
|
| >KOG1308|consensus | Back alignment and domain information |
|---|
Probab=93.44 E-value=0.021 Score=56.03 Aligned_cols=120 Identities=14% Similarity=0.066 Sum_probs=55.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
.|.+++|++.+..++.+.+.... .|...+.+++.+++...|+.-+..++.+.++. +.-|-..|.+...
T Consensus 127 ~G~~~~ai~~~t~ai~lnp~~a~------l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds------a~~ykfrg~A~rl 194 (377)
T KOG1308|consen 127 DGEFDTAIELFTSAIELNPPLAI------LYAKRASVFLKLKKPNAAIRDCDFAIEINPDS------AKGYKFRGYAERL 194 (377)
T ss_pred CcchhhhhcccccccccCCchhh------hcccccceeeeccCCchhhhhhhhhhccCccc------ccccchhhHHHHH
Confidence 34455555555555544333222 44455555555555555555555555544442 3333344444455
Q ss_pred hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 293 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
+|++++|..++..+.++.-.-........+.-+...+-...+.++.+.+.-+
T Consensus 195 lg~~e~aa~dl~~a~kld~dE~~~a~lKeV~p~a~ki~e~~~k~er~~~e~~ 246 (377)
T KOG1308|consen 195 LGNWEEAAHDLALACKLDYDEANSATLKEVFPNAGKIEEHRRKYERAREERE 246 (377)
T ss_pred hhchHHHHHHHHHHHhccccHHHHHHHHHhccchhhhhhchhHHHHHHHHhc
Confidence 5555555555555544433322223333344444444444444444444443
|
|
| >KOG0376|consensus | Back alignment and domain information |
|---|
Probab=93.38 E-value=0.083 Score=54.43 Aligned_cols=96 Identities=15% Similarity=0.089 Sum_probs=85.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
+-.-+...+.-+.|+.|+..|.+|+++ .+..+..+.+.+..+...++|..|+.-+.+|+++.+ ....+
T Consensus 7 ~k~ean~~l~~~~fd~avdlysKaI~l------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP------~~~K~ 74 (476)
T KOG0376|consen 7 LKNEANEALKDKVFDVAVDLYSKAIEL------DPNCAIYFANRALAHLKVESFGGALHDALKAIELDP------TYIKA 74 (476)
T ss_pred hhhHHhhhcccchHHHHHHHHHHHHhc------CCcceeeechhhhhheeechhhhHHHHHHhhhhcCc------hhhhe
Confidence 345567778889999999999999999 888898999999999999999999999999999886 77889
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
|+..|.++...+. +.+|...|+....+.
T Consensus 75 Y~rrg~a~m~l~~--------------------~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 75 YVRRGTAVMALGE--------------------FKKALLDLEKVKKLA 102 (476)
T ss_pred eeeccHHHHhHHH--------------------HHHHHHHHHHhhhcC
Confidence 9999999999999 999999998877764
|
|
| >KOG2908|consensus | Back alignment and domain information |
|---|
Probab=93.36 E-value=9.3 Score=38.03 Aligned_cols=100 Identities=8% Similarity=-0.051 Sum_probs=67.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh--HHHHHHHHHHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG--EGRACWSLGNA 329 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~~~~~~~La~~ 329 (609)
..++.++|++++++..+.......+.........+|.++...|+..++.+.+...-....+...... ....|..-+..
T Consensus 87 ~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqY 166 (380)
T KOG2908|consen 87 QISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQY 166 (380)
T ss_pred HhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHH
Confidence 4457788888888887777776666566666777788888888888888888777776666544222 33344444566
Q ss_pred HHHcCChHHHHHHHHHHHHHHH
Q psy10738 330 HAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~l~~ 351 (609)
|...|++..+..+.-+.+....
T Consensus 167 yk~~~d~a~yYr~~L~YL~~~d 188 (380)
T KOG2908|consen 167 YKKIGDFASYYRHALLYLGCSD 188 (380)
T ss_pred HHHHHhHHHHHHHHHHHhcccc
Confidence 7777888777666666665543
|
|
| >KOG0890|consensus | Back alignment and domain information |
|---|
Probab=93.22 E-value=22 Score=44.58 Aligned_cols=130 Identities=12% Similarity=-0.044 Sum_probs=86.7
Q ss_pred HHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC
Q psy10738 217 KQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 295 (609)
.+-+-.+++++-..... +-....+.+|...|.+....|+++.|..++-+|.+.- .+.++...|..++..|+
T Consensus 1646 ~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r--------~~~i~~E~AK~lW~~gd 1717 (2382)
T KOG0890|consen 1646 KEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR--------LPEIVLERAKLLWQTGD 1717 (2382)
T ss_pred HhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc--------cchHHHHHHHHHHhhcc
Confidence 34444445544433322 3355667799999999999999999988888776644 25678888999999999
Q ss_pred HHHHHHHHHHHHHHHHHh-cc----------hhhHHHHHHHHHHHHHHcCChH--HHHHHHHHHHHHHHHcC
Q psy10738 296 YPTAIDYHLRHLIIAQQL-MD----------RVGEGRACWSLGNAHAARGNHE--KALYFATKHLEISKQLG 354 (609)
Q Consensus 296 ~~~A~~~~~~al~~~~~~-~~----------~~~~~~~~~~La~~~~~~g~~~--~A~~~~~~al~l~~~~~ 354 (609)
-..|+..+++.+...... .. ......+...++......|+++ .-+.+|..+.++..+-.
T Consensus 1718 ~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe 1789 (2382)
T KOG0890|consen 1718 ELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE 1789 (2382)
T ss_pred HHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc
Confidence 999999999988654332 11 1112235566666666777643 45567777777765433
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.17 E-value=4.2 Score=39.77 Aligned_cols=152 Identities=19% Similarity=0.150 Sum_probs=97.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 283 (609)
Q Consensus 204 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 283 (609)
..-+.-....|++.+|...+..++...++..+ +...++.+|...|+.+.|...+...-.-... . ....+
T Consensus 138 ~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~---~--~~~~l 206 (304)
T COG3118 138 LAEAKELIEAEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILAALPLQAQD---K--AAHGL 206 (304)
T ss_pred HHHhhhhhhccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHHhCcccchh---h--HHHHH
Confidence 34455667889999999999999999988876 8889999999999999998877653221111 0 11111
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy10738 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363 (609)
Q Consensus 284 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~ 363 (609)
...-..+.......+....-.+ .........+-+.+|..+...|+.+.|.+.+-..+...... ....++
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~~~-------~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~----~d~~~R 275 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQRR-------LAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGF----EDGEAR 275 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHHHH-------HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccc----cCcHHH
Confidence 1111222222222222221111 11122345678899999999999999999887766644322 234566
Q ss_pred HHHHHHHHHcCCCC
Q psy10738 364 MNVTDLRKALGMST 377 (609)
Q Consensus 364 ~~la~l~~~~g~~~ 377 (609)
..+-++....|..+
T Consensus 276 k~lle~f~~~g~~D 289 (304)
T COG3118 276 KTLLELFEAFGPAD 289 (304)
T ss_pred HHHHHHHHhcCCCC
Confidence 77778888888543
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=92.99 E-value=16 Score=39.61 Aligned_cols=189 Identities=12% Similarity=0.116 Sum_probs=98.1
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~ 143 (609)
..++..+...|+|.+|.+.|.+.=.-.+... ...-.-.+..+.-+...|.-++-.....+-.+-+...+.+..
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlE--myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePka----- 708 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALE--MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKA----- 708 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHH--HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHH-----
Confidence 3467777778888888777764321111000 000011233445555555555555444444444444444332
Q ss_pred HHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH------HHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY------YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 144 ~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~------~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
.|..+...|+ .++|+.. .+-++++..++.. .....+..++..+..+..+.
T Consensus 709 --AAEmLiSaGe--------------------~~KAi~i~~d~gW~d~lidI~rkld~--~ere~l~~~a~ylk~l~~~g 764 (1081)
T KOG1538|consen 709 --AAEMLISAGE--------------------HVKAIEICGDHGWVDMLIDIARKLDK--AEREPLLLCATYLKKLDSPG 764 (1081)
T ss_pred --HHHHhhcccc--------------------hhhhhhhhhcccHHHHHHHHHhhcch--hhhhHHHHHHHHHhhccccc
Confidence 2344555666 6666543 2334444444321 12234444555555555555
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
-|.+.|.+. ++ ...+-.++...+++.+|....++.-+.. ..+++-.|..+....+++
T Consensus 765 LAaeIF~k~-------gD-------~ksiVqlHve~~~W~eAFalAe~hPe~~---------~dVy~pyaqwLAE~DrFe 821 (1081)
T KOG1538|consen 765 LAAEIFLKM-------GD-------LKSLVQLHVETQRWDEAFALAEKHPEFK---------DDVYMPYAQWLAENDRFE 821 (1081)
T ss_pred hHHHHHHHh-------cc-------HHHHhhheeecccchHhHhhhhhCcccc---------ccccchHHHHhhhhhhHH
Confidence 555555442 33 1224456777788888876665443332 335666677777777888
Q ss_pred HHHHHHHHH
Q psy10738 298 TAIDYHLRH 306 (609)
Q Consensus 298 ~A~~~~~~a 306 (609)
+|.+.|.+|
T Consensus 822 EAqkAfhkA 830 (1081)
T KOG1538|consen 822 EAQKAFHKA 830 (1081)
T ss_pred HHHHHHHHh
Confidence 887777654
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=92.98 E-value=0.21 Score=30.93 Aligned_cols=29 Identities=24% Similarity=0.298 Sum_probs=16.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTD 54 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 54 (609)
+..|.++...|++++|+..|+++++..|+
T Consensus 4 ~~~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 4 YRLARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 34455555566666666666666555553
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=92.92 E-value=2.3 Score=38.28 Aligned_cols=95 Identities=17% Similarity=0.147 Sum_probs=63.3
Q ss_pred CCHHHHH-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 74 GDYQKAM-QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147 (609)
Q Consensus 74 g~~~~A~-~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg 147 (609)
|+|-+++ +.|+.|..+++..-+....+...+.+|..+.. .++...|++++..+-+. ....+..++|
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~--------n~~~aC~~~g 112 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA--------NIPQACRYLG 112 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc--------CCHHHHhhhh
Confidence 3443333 35666667777776677778888888876653 35788999999887763 3455777888
Q ss_pred HHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 148 NVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
.+++.-.. +.++-.+..+|.+++.++-.+
T Consensus 113 Ll~~~g~~-------------~r~~dpd~~Ka~~y~traCdl 141 (248)
T KOG4014|consen 113 LLHWNGEK-------------DRKADPDSEKAERYMTRACDL 141 (248)
T ss_pred hhhccCcC-------------CccCCCCcHHHHHHHHHhccC
Confidence 77765433 223333478999999888664
|
|
| >KOG4014|consensus | Back alignment and domain information |
|---|
Probab=92.87 E-value=2.1 Score=38.53 Aligned_cols=149 Identities=17% Similarity=0.219 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYL-----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--- 253 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--- 253 (609)
-|++|.++++..-+....+...+.+|..+.. .++...|+++++.+-+. +. ..+..++|.++..-
T Consensus 50 nF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----n~----~~aC~~~gLl~~~g~~~ 121 (248)
T KOG4014|consen 50 NFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----NI----PQACRYLGLLHWNGEKD 121 (248)
T ss_pred HHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----CC----HHHHhhhhhhhccCcCC
Confidence 4555555666555555556667777765553 45788899998887652 11 22666777776643
Q ss_pred --C--CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh------------------------CCHHHHHHHHHH
Q psy10738 254 --G--EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL------------------------RDYPTAIDYHLR 305 (609)
Q Consensus 254 --g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~------------------------g~~~~A~~~~~~ 305 (609)
+ +.++|.+++.++-++.. +.+++.|...|..- .+.++|.++..+
T Consensus 122 r~~dpd~~Ka~~y~traCdl~~--------~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~~~~kDMdka~qfa~k 193 (248)
T KOG4014|consen 122 RKADPDSEKAERYMTRACDLED--------GEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELGSLSKDMDKALQFAIK 193 (248)
T ss_pred ccCCCCcHHHHHHHHHhccCCC--------chHHHHHHHHHhccchhhcccCCCCCCCcchhhhhhhhHhHHHHHHHHHH
Confidence 2 36788888888766432 34555555555432 345566666555
Q ss_pred HHHHHHHhcchhhHHHHHHHHHHHHHHc----CChHHHHHHHHHHHHHHHHcC
Q psy10738 306 HLIIAQQLMDRVGEGRACWSLGNAHAAR----GNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 306 al~~~~~~~~~~~~~~~~~~La~~~~~~----g~~~~A~~~~~~al~l~~~~~ 354 (609)
|-++ ....++.++++.|..- .+.++|..+-.+|.++.+++.
T Consensus 194 ACel--------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~~ 238 (248)
T KOG4014|consen 194 ACEL--------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEELR 238 (248)
T ss_pred HHhc--------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHHH
Confidence 5543 2345677777777542 367899999999999887654
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=92.78 E-value=17 Score=39.63 Aligned_cols=80 Identities=24% Similarity=0.276 Sum_probs=44.7
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH---cCChhhHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN---MEDKLGEAKSSG 104 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~d~~~~~~a~~ 104 (609)
+|++-.--|+|++|...|-.+-.. |. --..+..+|+|-... ++.+. ..|+...-.++.
T Consensus 740 ~aei~~~~g~feeaek~yld~drr---DL---------Aielr~klgDwfrV~-------qL~r~g~~d~dD~~~e~A~r 800 (1189)
T KOG2041|consen 740 RAEISAFYGEFEEAEKLYLDADRR---DL---------AIELRKKLGDWFRVY-------QLIRNGGSDDDDEGKEDAFR 800 (1189)
T ss_pred hHhHhhhhcchhHhhhhhhccchh---hh---------hHHHHHhhhhHHHHH-------HHHHccCCCcchHHHHHHHH
Confidence 355555667777777776544221 10 012233444443333 33333 334555667777
Q ss_pred HHHHHHHHcCCHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~a 126 (609)
++|..+..+-.+++|.++|...
T Consensus 801 ~ig~~fa~~~~We~A~~yY~~~ 822 (1189)
T KOG2041|consen 801 NIGETFAEMMEWEEAAKYYSYC 822 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHhc
Confidence 7777777777777777777654
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=92.70 E-value=9.9 Score=36.57 Aligned_cols=189 Identities=16% Similarity=0.114 Sum_probs=105.1
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
++..|..+...|+|++.+.++++++..+++-.. .=...++.+|-. .|....+...+......-...+.....
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~---eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~---- 76 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMNPELTE---EERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQV---- 76 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTSS---H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHH----
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccCCCCCH---HHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHH----
Confidence 455688899999999999999999998664211 122344444432 244444444443333322211111111
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH-----cCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQ-----LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~-----~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+..-|.. .=-++=...+...+.+... ..+....+..+-..|..|...-.. ...++.....++
T Consensus 77 -~~i~~yk~-kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~----------~~~~~~~~~~~~ 144 (236)
T PF00244_consen 77 -KLIKDYKK-KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEF----------DSGDEKKEAAEK 144 (236)
T ss_dssp -HHHHHHHH-HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHC----------TTHHHHHHHHHH
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccccccc----------ccchhhHHHHHH
Confidence 11111111 1123344555666655443 233334444555677777766541 112234455789
Q ss_pred HHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLALMKEI--NDTAAQGRACGNLGNTY-YLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 179 A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~-~~~g~~~~A~~~~~~al~~~~~ 232 (609)
|...|++|+.++... ..+|.......|.+..| ..+|+.++|+...++++..+..
T Consensus 145 a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 145 ALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 999999999999883 33444445555555555 4589999999999998877654
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG1497|consensus | Back alignment and domain information |
|---|
Probab=92.60 E-value=11 Score=37.06 Aligned_cols=128 Identities=12% Similarity=-0.009 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH--HHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 237 AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLA--QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
...+.+...||.+|...++|..|...+.-. ... +...+.......+..+|.+|...++..+|..+..++--......
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 344667888999999999999988766422 111 11123334567888999999999999999999988765555445
Q ss_pred chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH
Q psy10738 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367 (609)
Q Consensus 315 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la 367 (609)
+.......-...|++.-..+++-+|...|-+... .++++.....+++....
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels~--~ki~~e~~~~~aL~~a~ 229 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYELSQ--RKIVDESERLEALKKAL 229 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhcchHHHHHHHHHhH
Confidence 5555555555567777788888777766664433 33344444444444333
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=92.47 E-value=2.9 Score=42.61 Aligned_cols=105 Identities=11% Similarity=0.122 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCC-------------cch-hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGT-------------DDL-RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-------------~~~-~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.-+..|...+++++|..|..-|..||++.. +|. .....+--.+..||..+++.+-|+....+.+.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 334458899999999999999999998722 111 123456678899999999999999999999888
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
.|....-+...|.++..+.+|.+|...+.-+.-++--.+
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888889999999999999999988877766655444
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.26 E-value=3.4 Score=43.77 Aligned_cols=95 Identities=15% Similarity=0.092 Sum_probs=44.0
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
=......|+++++....... ++-|.-+ ......++..+...|-++.|+...+.- ...+.
T Consensus 268 fk~av~~~d~~~v~~~i~~~-~ll~~i~---~~~~~~i~~fL~~~G~~e~AL~~~~D~--------------~~rFe--- 326 (443)
T PF04053_consen 268 FKTAVLRGDFEEVLRMIAAS-NLLPNIP---KDQGQSIARFLEKKGYPELALQFVTDP--------------DHRFE--- 326 (443)
T ss_dssp HHHHHHTT-HHH-----HHH-HTGGG-----HHHHHHHHHHHHHTT-HHHHHHHSS-H--------------HHHHH---
T ss_pred HHHHHHcCChhhhhhhhhhh-hhcccCC---hhHHHHHHHHHHHCCCHHHHHhhcCCh--------------HHHhH---
Confidence 34566778888877776422 1112111 113456677777888888777653321 11122
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+....|+++.|.+..++ .. ....|..||......|+
T Consensus 327 LAl~lg~L~~A~~~a~~-------~~----~~~~W~~Lg~~AL~~g~ 362 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKE-------LD----DPEKWKQLGDEALRQGN 362 (443)
T ss_dssp HHHHCT-HHHHHHHCCC-------CS----THHHHHHHHHHHHHTTB
T ss_pred HHHhcCCHHHHHHHHHh-------cC----cHHHHHHHHHHHHHcCC
Confidence 22455666665554322 21 12256667777777776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=92.05 E-value=0.45 Score=46.15 Aligned_cols=75 Identities=19% Similarity=0.201 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
-+..|....+.|+.++|..+|+.|+.+.|.+++ ++..+|......++.-+|-.+|-+|+.+ .+...+++.
T Consensus 119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~----~L~e~G~f~E~~~~iv~ADq~Y~~ALti------sP~nseALv 188 (472)
T KOG3824|consen 119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ----ILIEMGQFREMHNEIVEADQCYVKALTI------SPGNSEALV 188 (472)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHH----HHHHHhHHHHhhhhhHhhhhhhheeeee------CCCchHHHh
Confidence 334466777888888888888888888888765 7777888887778888888888888888 666666666
Q ss_pred HHHHH
Q psy10738 105 NLGNT 109 (609)
Q Consensus 105 ~lg~~ 109 (609)
+.+..
T Consensus 189 nR~RT 193 (472)
T KOG3824|consen 189 NRART 193 (472)
T ss_pred hhhcc
Confidence 65543
|
|
| >KOG4507|consensus | Back alignment and domain information |
|---|
Probab=91.96 E-value=0.44 Score=50.24 Aligned_cols=96 Identities=18% Similarity=0.190 Sum_probs=82.5
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|..+...|+...|+.++..|+...|.... ....+|+++....|-...|-.++.+++.+ .......++.+|
T Consensus 613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~---v~~v~la~~~~~~~~~~da~~~l~q~l~~------~~sepl~~~~~g 683 (886)
T KOG4507|consen 613 AGLYWRAVGNSTFAIACLQRALNLAPLQQD---VPLVNLANLLIHYGLHLDATKLLLQALAI------NSSEPLTFLSLG 683 (886)
T ss_pred ccceeeecCCcHHHHHHHHHHhccChhhhc---ccHHHHHHHHHHhhhhccHHHHHHHHHhh------cccCchHHHhcc
Confidence 377788899999999999999998885432 24678899999999889999999999998 455667889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+.|..+.+.+.|++.++.|++..+.
T Consensus 684 ~~~l~l~~i~~a~~~~~~a~~~~~~ 708 (886)
T KOG4507|consen 684 NAYLALKNISGALEAFRQALKLTTK 708 (886)
T ss_pred hhHHHHhhhHHHHHHHHHHHhcCCC
Confidence 9999999999999999999998763
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.58 E-value=19 Score=37.42 Aligned_cols=142 Identities=11% Similarity=-0.008 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHH-HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLS-AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a-~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
+-+..+|..+.+++++.+|...|.+..+.....+.... .++..+-.-.+.+++.+.-. ..+...++. .+....
T Consensus 7 ~llc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~nld~Me----~~l~~l~~~--~~~s~~ 80 (549)
T PF07079_consen 7 YLLCFQGFILQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLNNLDLME----KQLMELRQQ--FGKSAY 80 (549)
T ss_pred HHHHHhhHHHHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHhhHHHHH----HHHHHHHHh--cCCchH
Confidence 34556799999999999999999999887665543332 34443333333344444433 333333322 234456
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH---------HHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE---------GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~---------~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
.....|...+..+.|.+|+..+...-+.......+... ...-...+.++...|.
T Consensus 81 l~LF~~L~~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~----------------- 143 (549)
T PF07079_consen 81 LPLFKALVAYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGR----------------- 143 (549)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCC-----------------
Confidence 66778889999999999998876554443322222111 1122345777888898
Q ss_pred HHhHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~ 190 (609)
|.++...+++.+...
T Consensus 144 ---f~EgR~iLn~i~~~l 158 (549)
T PF07079_consen 144 ---FSEGRAILNRIIERL 158 (549)
T ss_pred ---cchHHHHHHHHHHHH
Confidence 888888887776654
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=91.28 E-value=21 Score=37.21 Aligned_cols=165 Identities=13% Similarity=0.012 Sum_probs=94.7
Q ss_pred ChHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 195 DTAAQGRACGNLGNTYYLLGN-FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
|....+.-+...|.-++..|. -++|+..++.++...+. |......+....-..|... --..++..+-+......+.
T Consensus 374 DrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft~y--D~ec~n~v~~fvKq~Y~qa-Ls~~~~~rLlkLe~fi~e~ 450 (549)
T PF07079_consen 374 DRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFTNY--DIECENIVFLFVKQAYKQA-LSMHAIPRLLKLEDFITEV 450 (549)
T ss_pred cHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhccc--cHHHHHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHhc
Confidence 455566677777888888888 78889888888776442 1111111111111111110 0011222222222222232
Q ss_pred CCcH---HHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 274 GDRA---VEAQACYSL--GNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 274 ~~~~---~~~~~~~~l--a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
+-+. .....-..| |..++..|+|.++.-|-.-..++++. ..++..+|.+.....+|++|..++.+.=
T Consensus 451 gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~iaPS-------~~~~RLlGl~l~e~k~Y~eA~~~l~~LP- 522 (549)
T PF07079_consen 451 GLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKIAPS-------PQAYRLLGLCLMENKRYQEAWEYLQKLP- 522 (549)
T ss_pred CCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCc-------HHHHHHHHHHHHHHhhHHHHHHHHHhCC-
Confidence 2111 122233333 55677899999999998888888764 5689999999999999999988876521
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHcC
Q psy10738 349 ISKQLGDPLGQVTAQMNVTDLRKALG 374 (609)
Q Consensus 349 l~~~~~~~~~~~~a~~~la~l~~~~g 374 (609)
.++......+...++-+++.+.
T Consensus 523 ----~n~~~~dskvqKAl~lCqKh~~ 544 (549)
T PF07079_consen 523 ----PNERMRDSKVQKALALCQKHLP 544 (549)
T ss_pred ----CchhhHHHHHHHHHHHHHHhhh
Confidence 1333344555666666665443
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=91.08 E-value=19 Score=36.48 Aligned_cols=83 Identities=5% Similarity=-0.048 Sum_probs=46.3
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHH--------hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFY--------LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~--------~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.-|++.+..+|.|...........-..... ..-.+.-+.++++|++. .+.....+..+-.......
T Consensus 6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~------np~~~~L~l~~l~~~~~~~ 79 (321)
T PF08424_consen 6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKH------NPDSERLLLGYLEEGEKVW 79 (321)
T ss_pred HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhC
Confidence 456778888898866333322222222211 11245566778888777 3344444444444555666
Q ss_pred CHHHHHHHHHHHHHHHH
Q psy10738 115 KYDEAMVCCKRHLEISR 131 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~ 131 (609)
+-++...-+++++...+
T Consensus 80 ~~~~l~~~we~~l~~~~ 96 (321)
T PF08424_consen 80 DSEKLAKKWEELLFKNP 96 (321)
T ss_pred CHHHHHHHHHHHHHHCC
Confidence 77777777777766543
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.76 E-value=11 Score=33.99 Aligned_cols=149 Identities=13% Similarity=0.046 Sum_probs=94.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|..|+..+.-+.+-..|..++++... ++ .++|+..|...
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~---------------------~k--------------------~d~Alaaf~~l 84 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQE---------------------NK--------------------TDDALAAFTDL 84 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHc---------------------CC--------------------chHHHHHHHHH
Confidence 45566667777777777777776652 22 45555544432
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH-HHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA-ERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++.+....-..+....|.+....|+...|+.+|.++-...+ .+.. .-.+...-+.++...|-|+.-....+.
T Consensus 85 ----ektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~---~P~~~rd~ARlraa~lLvD~gsy~dV~srvep 157 (221)
T COG4649 85 ----EKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS---IPQIGRDLARLRAAYLLVDNGSYDDVSSRVEP 157 (221)
T ss_pred ----HhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC---CcchhhHHHHHHHHHHHhccccHHHHHHHhhh
Confidence 22333333345677788889999999999999987644322 1111 122455566777888888765543322
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
+. .........+...||..-++.|++.+|..+|.....
T Consensus 158 ---La--~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 158 ---LA--GDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred ---cc--CCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 11 123344566778889999999999999999987554
|
|
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=90.48 E-value=0.61 Score=30.37 Aligned_cols=32 Identities=31% Similarity=0.280 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
++..||.+-...++|++|+.-|++++++.+++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777777777766554
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=90.14 E-value=1.5 Score=31.02 Aligned_cols=28 Identities=29% Similarity=0.430 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+++.+|..++.+|+|++|..+.+.++++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5677777778888888888888877777
|
|
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=90.04 E-value=0.36 Score=28.90 Aligned_cols=28 Identities=39% Similarity=0.713 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
++..+|.++...|++++|+.++++++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566677777777777777777666654
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=89.93 E-value=0.3 Score=29.28 Aligned_cols=28 Identities=39% Similarity=0.617 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
++..+|.++...|+++.|..++.+++++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4556666666666666666666666544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=89.52 E-value=4.2 Score=36.13 Aligned_cols=82 Identities=15% Similarity=0.022 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+.........++.+++..++...-.+.|+.+. +-..-|+++...|+|.+|+..++...+- .+....+--.
T Consensus 14 ie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e----~~~~~~~l~i~r~~w~dA~rlLr~l~~~------~~~~p~~kAL 83 (160)
T PF09613_consen 14 IEVLSVALRLGDPDDAEALLDALRVLRPEFPE----LDLFDGWLHIVRGDWDDALRLLRELEER------APGFPYAKAL 83 (160)
T ss_pred HHHHHHHHccCChHHHHHHHHHHHHhCCCchH----HHHHHHHHHHHhCCHHHHHHHHHHHhcc------CCCChHHHHH
Confidence 33455667788999999999988888998754 6677899999999999999999987554 5666667777
Q ss_pred HHHHHHHcCCHH
Q psy10738 106 LGNTLKVMGKYD 117 (609)
Q Consensus 106 lg~~~~~~g~~~ 117 (609)
++.|+..+|+.+
T Consensus 84 lA~CL~~~~D~~ 95 (160)
T PF09613_consen 84 LALCLYALGDPS 95 (160)
T ss_pred HHHHHHHcCChH
Confidence 888888888753
|
|
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=89.48 E-value=22 Score=34.75 Aligned_cols=143 Identities=13% Similarity=0.032 Sum_probs=70.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
+..+...|++..|.+...-.++...+.+...... ...++..+....+.. -..-..+..++
T Consensus 17 a~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~-~~~rl~~l~~~~~~~-------------------~p~r~~fi~~a 76 (260)
T PF04190_consen 17 ALILLKHGQYGSGADLALLLIEVYEKSEDPVDEE-SIARLIELISLFPPE-------------------EPERKKFIKAA 76 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHH-HHHHHHHHHHHS-TT--------------------TTHHHHHHHH
T ss_pred HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhCCCC-------------------cchHHHHHHHH
Confidence 3444555566666666655555555544333222 224555555555430 11234455556
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------HHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK-----------IAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~-----------~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
++..+..+.+......+..+|..++..|++.+|..++-.+-. .....+.+..........-.-|...++
T Consensus 77 i~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n 156 (260)
T PF04190_consen 77 IKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGN 156 (260)
T ss_dssp HHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTB
T ss_pred HHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcC
Confidence 665533344455667888899999999999988888743211 111112111111122222334556677
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 256 YQAASEHYKRTLVL 269 (609)
Q Consensus 256 ~~~A~~~~~~al~~ 269 (609)
...|...+..-.+.
T Consensus 157 ~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 157 LRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77777766555544
|
; PDB: 3LKU_E 2WPV_G. |
| >PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=89.34 E-value=0.91 Score=29.55 Aligned_cols=32 Identities=22% Similarity=0.205 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
++..||.+-...++|++|+.-|++++.+..++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l 34 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQEEL 34 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHh
Confidence 56667777777777777777777777766543
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat []. |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=88.77 E-value=13 Score=41.41 Aligned_cols=50 Identities=22% Similarity=0.210 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 82 YHKQDLTLARNME-DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 82 ~~~~al~~~~~~~-d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.|.-|+.+++..+ +......++...|..++..|++++|..+|-+++....
T Consensus 349 ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 349 LYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 4555666777654 4455678888999999999999999999999886543
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=88.74 E-value=1.3 Score=31.32 Aligned_cols=33 Identities=15% Similarity=0.181 Sum_probs=27.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchh
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLR 57 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~ 57 (609)
++..|..+++.|+|++|..+.+.+++..|++..
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q 36 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ 36 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence 344578899999999999999999999999865
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=88.58 E-value=23 Score=37.54 Aligned_cols=158 Identities=18% Similarity=0.184 Sum_probs=82.8
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
....++++++....... .+.+.+ ...-...++..+..+|.++.|+.....--. .+. +
T Consensus 271 av~~~d~~~v~~~i~~~-~ll~~i-----~~~~~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rFe---L 327 (443)
T PF04053_consen 271 AVLRGDFEEVLRMIAAS-NLLPNI-----PKDQGQSIARFLEKKGYPELALQFVTDPDH--------------RFE---L 327 (443)
T ss_dssp HHHTT-HHH-----HHH-HTGGG-------HHHHHHHHHHHHHTT-HHHHHHHSS-HHH--------------HHH---H
T ss_pred HHHcCChhhhhhhhhhh-hhcccC-----ChhHHHHHHHHHHHCCCHHHHHhhcCChHH--------------HhH---H
Confidence 34567888877666311 111111 123355667778888888888776543211 122 3
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
....|+ ++.|.+. +++..+ ...|..||......|+++-|.++|+++-.
T Consensus 328 Al~lg~--------------------L~~A~~~-------a~~~~~----~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d- 375 (443)
T PF04053_consen 328 ALQLGN--------------------LDIALEI-------AKELDD----PEKWKQLGDEALRQGNIELAEECYQKAKD- 375 (443)
T ss_dssp HHHCT---------------------HHHHHHH-------CCCCST----HHHHHHHHHHHHHTTBHHHHHHHHHHCT--
T ss_pred HHhcCC--------------------HHHHHHH-------HHhcCc----HHHHHHHHHHHHHcCCHHHHHHHHHhhcC-
Confidence 356677 6666443 333333 23788999999999999999999988633
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 230 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
+..|..+|...|+.+.- ++...++...++.. ..-.+++..|+.++.++.+.++
T Consensus 376 -------------~~~L~lLy~~~g~~~~L----~kl~~~a~~~~~~n-------~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 376 -------------FSGLLLLYSSTGDREKL----SKLAKIAEERGDIN-------IAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp -------------HHHHHHHHHHCT-HHHH----HHHHHHHHHTT-HH-------HHHHHHHHHT-HHHHHHHHHHT
T ss_pred -------------ccccHHHHHHhCCHHHH----HHHHHHHHHccCHH-------HHHHHHHHcCCHHHHHHHHHHc
Confidence 34566677778886443 33333444333211 1123445566766666655543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function | Back alignment and domain information |
|---|
Probab=88.15 E-value=27 Score=34.11 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=16.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 207 GNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 207 g~~~~~~g~~~~A~~~~~~al~~ 229 (609)
..-|...|+...|...+..-.+.
T Consensus 148 VL~yL~l~n~~~A~~~~~~f~~~ 170 (260)
T PF04190_consen 148 VLQYLCLGNLRDANELFDTFTSK 170 (260)
T ss_dssp HHHHHHTTBHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHH
Confidence 34466779999888877766655
|
; PDB: 3LKU_E 2WPV_G. |
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=88.05 E-value=10 Score=39.00 Aligned_cols=126 Identities=14% Similarity=0.005 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-----HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-----LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-----~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
+..++..|.+......|++|+.++-.|-+.+...+.. ...+..-..+-+||+.+.+..+ .+++..
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitc----------L~DAe~ 232 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITC----------LPDAEV 232 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhccccc----------CChHHH
Confidence 3445666777888888999988888777665543221 1334445566778888777111 112222
Q ss_pred hHHHHHHHHHHHHH----HHHHh--C---ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q psy10738 175 CLQEAIKYYEQNLA----LMKEI--N---DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 175 ~~~~A~~~~~~al~----~~~~~--~---~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (609)
.+..|.+.|.++.- -...+ + ......+.+..-|.+.+.+|+-++|.++++.+.....+..-
T Consensus 233 RL~ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki 302 (568)
T KOG2561|consen 233 RLVRARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKI 302 (568)
T ss_pred HHHHHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeec
Confidence 23344443333321 11111 1 12334556667788888888888888888888777666443
|
|
| >PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function | Back alignment and domain information |
|---|
Probab=87.88 E-value=31 Score=34.97 Aligned_cols=122 Identities=10% Similarity=0.020 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH---HHHHHHHHHcC
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS---GNLGNTLKVMG 114 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~---~~lg~~~~~~g 114 (609)
.+.-+.+|++|++.+|++.. ++..+-.......+.++...-+++++.. .+.....| ...-......-
T Consensus 47 ~E~klsilerAL~~np~~~~----L~l~~l~~~~~~~~~~~l~~~we~~l~~------~~~~~~LW~~yL~~~q~~~~~f 116 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER----LLLGYLEEGEKVWDSEKLAKKWEELLFK------NPGSPELWREYLDFRQSNFASF 116 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhCCHHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHHhccC
Confidence 56778999999999997755 2233333444556777777778877776 33333333 22222223344
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc------------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDK------------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~------------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
.+......|.+++......... .....++..+.......|. .+.|+..
T Consensus 117 ~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~--------------------~E~Ava~ 176 (321)
T PF08424_consen 117 TVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGY--------------------TERAVAL 176 (321)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCc--------------------hHHHHHH
Confidence 6888999999998876654322 2445666777777888888 8899988
Q ss_pred HHHHHHH
Q psy10738 183 YEQNLAL 189 (609)
Q Consensus 183 ~~~al~~ 189 (609)
++..+++
T Consensus 177 ~Qa~lE~ 183 (321)
T PF08424_consen 177 WQALLEF 183 (321)
T ss_pred HHHHHHH
Confidence 8888776
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=87.73 E-value=11 Score=41.97 Aligned_cols=50 Identities=18% Similarity=0.228 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 181 KYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 181 ~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
..|.-|+.+++..+. ......++...|..++..|++++|...|.+++...
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 456677888877754 45567788889999999999999999999987643
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=87.51 E-value=31 Score=35.88 Aligned_cols=63 Identities=16% Similarity=0.120 Sum_probs=46.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHH--HHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQL--GNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~l--g~~~~~~g~~~~A~~~~~~al~~ 89 (609)
...++..++..++|..|...+......-|.+.. ...+..+ |..++..-++.+|.++++..+..
T Consensus 134 ~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~ 198 (379)
T PF09670_consen 134 EWRRAKELFNRYDYGAAARILEELLRRLPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKR 198 (379)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 345588899999999999999999986333332 2344444 45556678899999999987765
|
|
| >KOG1497|consensus | Back alignment and domain information |
|---|
Probab=87.33 E-value=32 Score=34.05 Aligned_cols=108 Identities=9% Similarity=0.015 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA--REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 274 (609)
...+.+...||.+|...++|..|-..+.-. ... +...+.......+..+|.+|...++..+|..+..++--+.....
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~I-~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~ 178 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVGI-PLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESS 178 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhcc-CcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhccc
Confidence 345678889999999999999988766432 111 11223344566888999999999999999999988765555545
Q ss_pred CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 275 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
+.......-...|++.-..++|-+|...|-+
T Consensus 179 Ne~Lqie~kvc~ARvlD~krkFlEAAqrYye 209 (399)
T KOG1497|consen 179 NEQLQIEYKVCYARVLDYKRKFLEAAQRYYE 209 (399)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544444444556677667777666554443
|
|
| >PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ] | Back alignment and domain information |
|---|
Probab=87.13 E-value=29 Score=33.33 Aligned_cols=178 Identities=16% Similarity=0.088 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-MGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+..++.+....|+|++.+.+.++++... ......=...++.+|.. .|....+...+.....-....+......
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-----~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~~~~~~- 77 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-----PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGNEKQVK- 77 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-----S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTHHHHH-
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-----CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccchhHHHH-
Confidence 4667888889999999999999988772 22222333344444422 2333334433333222222111111111
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-----CChHHHHHHHHHHHHHHHHc---
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-----NDTAAQGRACGNLGNTYYLL--- 213 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-----~~~~~~~~~~~~lg~~~~~~--- 213 (609)
+..-|. .+ .-++-.......+.+.... .+.......+-..|..|..+
T Consensus 78 ----~i~~yk--~k-------------------ie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~ 132 (236)
T PF00244_consen 78 ----LIKDYK--KK-------------------IEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEF 132 (236)
T ss_dssp ----HHHHHH--HH-------------------HHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHHHH--HH-------------------HHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhcccccccccc
Confidence 111111 11 0122233444444444332 22233333334445544322
Q ss_pred --C-----CHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHH
Q psy10738 214 --G-----NFKQAIYYHQERLKIAREF--GDKAAERRANSNLGNSH-IFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 214 --g-----~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~ 271 (609)
| -.+.|...|++|+.++... +..+.......|.+..| ...|+.++|+...++|+..+.
T Consensus 133 ~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 133 DSGDEKKEAAEKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 1 1356777888888887772 22222233334444443 446778888777777766554
|
There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A .... |
| >KOG2908|consensus | Back alignment and domain information |
|---|
Probab=86.78 E-value=36 Score=34.05 Aligned_cols=100 Identities=11% Similarity=0.141 Sum_probs=74.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHH-
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLG- 287 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la- 287 (609)
....++.++|++++++..+.......+.........+|.++...|+..++.+.+...-........-.. ....++.++
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lss 164 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSS 164 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHH
Confidence 345569999999999999998888887778888899999999999999999999988887766543222 344455554
Q ss_pred HHHHHhCCHHHHHHHHHHHHHH
Q psy10738 288 NTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 288 ~~~~~~g~~~~A~~~~~~al~~ 309 (609)
..|...|++..+....-+.+..
T Consensus 165 qYyk~~~d~a~yYr~~L~YL~~ 186 (380)
T KOG2908|consen 165 QYYKKIGDFASYYRHALLYLGC 186 (380)
T ss_pred HHHHHHHhHHHHHHHHHHHhcc
Confidence 4556678887665555444443
|
|
| >smart00101 14_3_3 14-3-3 homologues | Back alignment and domain information |
|---|
Probab=86.38 E-value=33 Score=33.12 Aligned_cols=187 Identities=12% Similarity=0.049 Sum_probs=101.5
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHh-CCcchhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHH-HcCChhhHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLAR-NMEDKLGEAKS 102 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~-~~~d~~~~~~a 102 (609)
+..|...-..|+|++.+.+.+++++. ++.... ..=...+..+|-. .|....+...+.. ++.-. ..+....
T Consensus 5 v~~Aklaeq~eRyddm~~~mk~~~~~~~~~eLt--~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~~~~---- 77 (244)
T smart00101 5 VYMAKLAEQAERYEEMVEFMEKVAKTVDSEELT--VEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGNEDH---- 77 (244)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhhcCCccCC--HHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCchHH----
Confidence 34577778889999999999999886 432222 1223445555543 3556666665554 22211 1111111
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-----NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-----~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
..+..-|. ..--++-...+...+.+.... .+....+..+-..|..|...-.. . ..++.....+
T Consensus 78 -~~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~-------~---~~~e~~~~~~ 145 (244)
T smart00101 78 -VASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEF-------K---TGAERKEAAE 145 (244)
T ss_pred -HHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHH-------c---CcHHHHHHHH
Confidence 11111111 011234455667777665433 22233444444666666665441 0 0123334577
Q ss_pred HHHHHHHHHHHHHHH-h-CChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHH
Q psy10738 178 EAIKYYEQNLALMKE-I-NDTAAQGRACGNLGNT-YYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 178 ~A~~~~~~al~~~~~-~-~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~ 231 (609)
+|...|++|++++.. + ..+|.......|.+.. |-.+++.++|....++++.-+-
T Consensus 146 ~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai 202 (244)
T smart00101 146 NTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAI 202 (244)
T ss_pred HHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999999775 3 2233333344444444 4457999999988888776543
|
14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases. |
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=85.36 E-value=10 Score=31.77 Aligned_cols=70 Identities=13% Similarity=0.211 Sum_probs=48.0
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc---------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR---------AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~---------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
+..+|......+++-.++-+|++|+.+..+.... ......+.+||..+..+|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 4556667777777777777777777776665210 112446778999999999999999988876554433
|
|
| >PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins | Back alignment and domain information |
|---|
Probab=85.27 E-value=13 Score=31.19 Aligned_cols=70 Identities=13% Similarity=0.064 Sum_probs=56.1
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc---------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHH
Q psy10738 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 283 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~ 352 (609)
+..+|....+.+++-.++-+|++|+.+..++.. -......+.+||..+...|+.+-.++|++-|-+....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~Vlt 82 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLT 82 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999988742 1122345779999999999999999998877665533
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=84.89 E-value=71 Score=35.67 Aligned_cols=18 Identities=22% Similarity=0.381 Sum_probs=10.9
Q ss_pred HHHHhcCChHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQA 47 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~ 47 (609)
..+...|+|+.|+.++-+
T Consensus 266 ~~LlLtgqFE~AI~~L~~ 283 (613)
T PF04097_consen 266 QVLLLTGQFEAAIEFLYR 283 (613)
T ss_dssp HHHHHTT-HHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHh
Confidence 445566777777776665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.81 E-value=1.2 Score=26.02 Aligned_cols=21 Identities=14% Similarity=-0.015 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~ 223 (609)
..++|.++...|++++|...+
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHH
Confidence 344455555555555554443
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B | Back alignment and domain information |
|---|
Probab=84.58 E-value=7.7 Score=30.94 Aligned_cols=46 Identities=28% Similarity=0.382 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 41 GVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLA 90 (609)
Q Consensus 41 A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 90 (609)
.+.-++++++.+|+|.. +.+.+|..+...|+++.|++.+-.++...
T Consensus 7 ~~~al~~~~a~~P~D~~----ar~~lA~~~~~~g~~e~Al~~Ll~~v~~d 52 (90)
T PF14561_consen 7 DIAALEAALAANPDDLD----ARYALADALLAAGDYEEALDQLLELVRRD 52 (90)
T ss_dssp HHHHHHHHHHHSTT-HH----HHHHHHHHHHHTT-HHHHHHHHHHHHCC-
T ss_pred cHHHHHHHHHcCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 46678889999999864 78899999999999999999888777663
|
|
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=84.05 E-value=1.4 Score=25.82 Aligned_cols=22 Identities=27% Similarity=0.286 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHcCChHHHHHHH
Q psy10738 322 ACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~ 343 (609)
+...+|.++...|++++|...+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l 24 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLL 24 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHH
Confidence 3445555555555555555544
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=83.97 E-value=4.1 Score=34.89 Aligned_cols=60 Identities=15% Similarity=0.259 Sum_probs=35.1
Q ss_pred HHHHHHhcC---ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 28 EGERLCKAG---DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 28 ~g~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.|+.+.... +..+.+.+++..++ ..++...-...+.|+..+++.++|++++.|....++.
T Consensus 38 lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 38 LAWALVRSRDTEDVQEGIVILEDLLK--SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHcccchHHHHHhHHHHHHHhh--hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 345554433 34566777777665 1222223446666777777777777777777666655
|
|
| >PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal | Back alignment and domain information |
|---|
Probab=83.87 E-value=32 Score=35.46 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=74.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---C--------h-hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---D--------K-LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---d--------~-~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
+-..=|..++++++|..|..-|..+|+++.+.. . . .....+.-.+..||..+++.+.|+.+..+.+.+
T Consensus 178 vAL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 178 VALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 334446677788888888888888888876431 1 0 112334567889999999999999999999888
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 130 SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 130 ~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
.+ ....-+...|.++..+.+ |.+|...+--+.-++
T Consensus 258 nP------~~frnHLrqAavfR~LeR--------------------y~eAarSamia~ymy 292 (569)
T PF15015_consen 258 NP------SYFRNHLRQAAVFRRLER--------------------YSEAARSAMIADYMY 292 (569)
T ss_pred Cc------chhhHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHH
Confidence 77 556667778888888888 888876665544433
|
|
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.73 E-value=7.6 Score=38.07 Aligned_cols=72 Identities=10% Similarity=0.064 Sum_probs=64.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...+.+.+.++-.+|...++++.|+.+.+..+.+ .|....-+...|.+|..+|.+..|..-++..++.+++
T Consensus 176 ~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l------~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 176 NIEVIRKLLDTLKAALMEEKQMELALRASEALLQF------DPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 44567788889999999999999999999999999 7777778888999999999999999999998888774
|
|
| >KOG2460|consensus | Back alignment and domain information |
|---|
Probab=83.39 E-value=66 Score=34.17 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=34.8
Q ss_pred ChHHHHHHHHHHHHhCCc----c----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 37 DCRAGVAFFQAAIQAGTD----D----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~----~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 93 (609)
+..+|..+..+...+... | .+..+.+-+.-|.+.+...+|..|.+.+..+--.+...
T Consensus 121 rLrkA~~~A~eL~~~~q~~e~~Da~tkLEA~Ayaa~m~G~lnfE~r~Wk~a~ea~~~~klvye~L 185 (593)
T KOG2460|consen 121 RLRKAVKHADELVNLTQNEERFDARTKLEAQAYAAYMEGMLNFERRKWKDAAEAFNNAKLVYEKL 185 (593)
T ss_pred HHHHHHHHHHHHHHHHhhHhhhhhHHHHHHHHHHHHHHhhhhhhHHhHHhHHHHHHHHHHHHHHH
Confidence 445555555555544221 1 22334444566777888889999999888877665544
|
|
| >PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [] | Back alignment and domain information |
|---|
Probab=83.07 E-value=26 Score=37.51 Aligned_cols=98 Identities=12% Similarity=0.057 Sum_probs=63.0
Q ss_pred HcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 272 DLGDRAVEAQACYSLGNTYTL--LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 272 ~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+.+.......++.+||.+... ...-..++..|.+|+..++..-+ .....-|..+|-.|.+.+++.+|+.++-+|-..
T Consensus 269 d~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~-n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~V 347 (618)
T PF05053_consen 269 DMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYN-NHHVYPYTYLGGYYYRHKRYREALRSWAEAADV 347 (618)
T ss_dssp HTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCT-T--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhc-CCccccceehhhHHHHHHHHHHHHHHHHHHHHH
Confidence 334333345555566655432 23456678888899888877544 233446777888899999999999999999998
Q ss_pred HHHcCCCchHHHHHHHHHHHH
Q psy10738 350 SKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 350 ~~~~~~~~~~~~a~~~la~l~ 370 (609)
.+..+......+++..+-++-
T Consensus 348 i~~YnY~reDeEiYKEfleIA 368 (618)
T PF05053_consen 348 IRKYNYSREDEEIYKEFLEIA 368 (618)
T ss_dssp HTTSB--GGGHHHHHHHHHHH
T ss_pred HHHcccCccHHHHHHHHHHHH
Confidence 888877777777776666554
|
; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A. |
| >KOG3824|consensus | Back alignment and domain information |
|---|
Probab=82.53 E-value=2.1 Score=41.72 Aligned_cols=62 Identities=21% Similarity=0.191 Sum_probs=54.5
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
...+.-....|+.++|...|+.|+.+ .+....++..+|.......+.-+|-.||-+|+.+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlal------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALAL------APTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhc------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34444556789999999999999999 788889999999999999999999999999999877
|
|
| >TIGR03504 FimV_Cterm FimV C-terminal domain | Back alignment and domain information |
|---|
Probab=82.53 E-value=3.5 Score=27.83 Aligned_cols=39 Identities=23% Similarity=0.200 Sum_probs=24.7
Q ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy10738 324 WSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNV 366 (609)
Q Consensus 324 ~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~l 366 (609)
+.||.+|..+|+.+.|...+++.+. .++.+....|...|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~----~~~~~q~~eA~~LL 41 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE----EGDEAQRQEARALL 41 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH----cCCHHHHHHHHHHH
Confidence 4677778888888888877777663 24444444444433
|
This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems. |
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=82.13 E-value=13 Score=32.56 Aligned_cols=78 Identities=14% Similarity=0.053 Sum_probs=59.9
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
......++.+++..++...--+.|+.+. +-..-|.++...|+|.+|+..++...+- .+....+.-.++.|
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~e----~d~~dg~l~i~rg~w~eA~rvlr~l~~~------~~~~p~~kAL~A~C 87 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLKE----LDMFDGWLLIARGNYDEAARILRELLSS------AGAPPYGKALLALC 87 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCccc----cchhHHHHHHHcCCHHHHHHHHHhhhcc------CCCchHHHHHHHHH
Confidence 3344588999999999888888888654 5677889999999999999998876654 44445566677888
Q ss_pred HHHcCCHH
Q psy10738 110 LKVMGKYD 117 (609)
Q Consensus 110 ~~~~g~~~ 117 (609)
+..+|+.+
T Consensus 88 L~al~Dp~ 95 (153)
T TIGR02561 88 LNAKGDAE 95 (153)
T ss_pred HHhcCChH
Confidence 88888753
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >KOG2561|consensus | Back alignment and domain information |
|---|
Probab=81.90 E-value=21 Score=36.80 Aligned_cols=48 Identities=10% Similarity=-0.071 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHH
Q psy10738 319 EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNV 366 (609)
Q Consensus 319 ~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~l 366 (609)
..+.+..-|.+.+.+|+.++|.++++.|.....++............+
T Consensus 266 ~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elki~d~~lsllv~m 313 (568)
T KOG2561|consen 266 ILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELKINDETLSLLVGM 313 (568)
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHeeccchHHHHHHHc
Confidence 345566668888888888888888888888777765555444444333
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=81.72 E-value=38 Score=30.19 Aligned_cols=85 Identities=18% Similarity=0.007 Sum_probs=67.0
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
....+..+..+-...++.+++...+.-.--+ .|.....-..-|+++...|++.+|+..++...+-.+ .
T Consensus 9 iv~gLie~~~~al~~~~~~D~e~lL~ALrvL------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~------~ 76 (160)
T PF09613_consen 9 IVGGLIEVLSVALRLGDPDDAEALLDALRVL------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAP------G 76 (160)
T ss_pred HHHHHHHHHHHHHccCChHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCC------C
Confidence 3445666777777888999998888877666 788888899999999999999999999998644332 4
Q ss_pred HHHHHHHHHHHHHHccc
Q psy10738 139 EGRALYNLGNVYHAKGK 155 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~ 155 (609)
...+--.++.|++..|+
T Consensus 77 ~p~~kALlA~CL~~~~D 93 (160)
T PF09613_consen 77 FPYAKALLALCLYALGD 93 (160)
T ss_pred ChHHHHHHHHHHHHcCC
Confidence 45566678888888888
|
|
| >PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710) | Back alignment and domain information |
|---|
Probab=81.43 E-value=72 Score=33.19 Aligned_cols=67 Identities=13% Similarity=0.005 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH--HHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN--LGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~--lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
+......+...+..++|..|...+...... +..... ...+.. .|..++...++.+|.++++..+...
T Consensus 131 ~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 131 GDREWRRAKELFNRYDYGAAARILEELLRR---LPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 344566677888999999999999987764 222222 334444 4566677889999999999877653
|
|
| >KOG3364|consensus | Back alignment and domain information |
|---|
Probab=80.74 E-value=17 Score=31.31 Aligned_cols=68 Identities=15% Similarity=0.111 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 240 RRANSNLGNSHIFLGEY---QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 240 ~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
....+++++++....+. .+.+..++..++ ..++...-...+.|+..+.+.++|++++.|.+..++.-+
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~----~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~ 102 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK----SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEP 102 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh----hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCC
Confidence 34677888888876654 455556655554 123333456778888889999999999999888776543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=80.64 E-value=78 Score=33.11 Aligned_cols=217 Identities=11% Similarity=-0.010 Sum_probs=123.6
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
-+.....|+.-...+...++-+.|+....+++...+. ....++.+|....+ .+++..+
T Consensus 298 ~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sps---------L~~~lse~yel~nd-------------~e~v~~~ 355 (660)
T COG5107 298 FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPS---------LTMFLSEYYELVND-------------EEAVYGC 355 (660)
T ss_pred hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCc---------hheeHHHHHhhccc-------------HHHHhhh
Confidence 4455667777777777788888888888887776652 33455566655555 3344444
Q ss_pred HHHHHHHHHHHHHHHHHh------CCh-----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 176 LQEAIKYYEQNLALMKEI------NDT-----------AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAA 238 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~------~~~-----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 238 (609)
|++....+.+-+.....- ++. .....++..+-+.-.+..-.+.|...|-++.+.-- .+.
T Consensus 356 fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~-~~h--- 431 (660)
T COG5107 356 FDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGI-VGH--- 431 (660)
T ss_pred HHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCC-CCc---
Confidence 555554444333222111 000 00111222222223333344555555555443210 111
Q ss_pred HHHHHHHHHH-HHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh
Q psy10738 239 ERRANSNLGN-SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317 (609)
Q Consensus 239 ~~~~~~~la~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 317 (609)
.+|..-|. -|...|++..|-..|+-.+...++. .......-..+...++-+.|...|++++.-....
T Consensus 432 --~vyi~~A~~E~~~~~d~~ta~~ifelGl~~f~d~------~~y~~kyl~fLi~inde~naraLFetsv~r~~~~---- 499 (660)
T COG5107 432 --HVYIYCAFIEYYATGDRATAYNIFELGLLKFPDS------TLYKEKYLLFLIRINDEENARALFETSVERLEKT---- 499 (660)
T ss_pred --ceeeeHHHHHHHhcCCcchHHHHHHHHHHhCCCc------hHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHHh----
Confidence 12222222 3556799999999999888776543 2222233345667899999999999988766553
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 318 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
....+|-.+-..-..-|+...++..-++..++.
T Consensus 500 q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 500 QLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred hhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 234566677777777888888887766666655
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 609 | ||||
| 3sf4_A | 406 | Crystal Structure Of The Complex Between The Conser | 1e-159 | ||
| 4a1s_A | 411 | Crystallographic Structure Of The Pins:insc Complex | 1e-149 | ||
| 4a1s_A | 411 | Crystallographic Structure Of The Pins:insc Complex | 1e-09 | ||
| 3ro2_A | 338 | Structures Of The LgnNUMA COMPLEX Length = 338 | 1e-146 | ||
| 3ro2_A | 338 | Structures Of The LgnNUMA COMPLEX Length = 338 | 6e-12 | ||
| 4g2v_A | 340 | Structure Complex Of Lgn Binding With Frmpd1 Length | 1e-146 | ||
| 4g2v_A | 340 | Structure Complex Of Lgn Binding With Frmpd1 Length | 6e-12 | ||
| 3ro3_A | 164 | Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length | 1e-65 | ||
| 2fo7_A | 136 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-13 | ||
| 2wqh_A | 125 | Crystal Structure Of Ctpr3y3 Length = 125 | 3e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 5e-09 | ||
| 1na0_A | 125 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-04 | ||
| 3kd7_A | 125 | Designed Tpr Module (Ctpr390) In Complex With Its P | 1e-07 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 6e-05 | ||
| 1na3_A | 91 | Design Of Stable Alpha-Helical Arrays From An Ideal | 4e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 2e-04 | ||
| 2avp_A | 70 | Crystal Structure Of An 8 Repeat Consensus Tpr Supe | 6e-04 |
| >pdb|3SF4|A Chain A, Crystal Structure Of The Complex Between The Conserved Cell Polarity Proteins Inscuteable And Lgn Length = 406 | Back alignment and structure |
|
| >pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411 | Back alignment and structure |
|
| >pdb|4A1S|A Chain A, Crystallographic Structure Of The Pins:insc Complex Length = 411 | Back alignment and structure |
|
| >pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338 | Back alignment and structure |
|
| >pdb|3RO2|A Chain A, Structures Of The LgnNUMA COMPLEX Length = 338 | Back alignment and structure |
|
| >pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340 | Back alignment and structure |
|
| >pdb|4G2V|A Chain A, Structure Complex Of Lgn Binding With Frmpd1 Length = 340 | Back alignment and structure |
|
| >pdb|3RO3|A Chain A, Crystal Structure Of LgnMINSCUTEABLE COMPLEX Length = 164 | Back alignment and structure |
|
| >pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136 | Back alignment and structure |
|
| >pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125 | Back alignment and structure |
|
| >pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|1NA3|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 91 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
| >pdb|2AVP|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix Length = 70 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 405 bits (1043), Expect = e-137
Identities = 263/410 (64%), Positives = 333/410 (81%), Gaps = 5/410 (1%)
Query: 14 GGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73
G CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL
Sbjct: 1 GPGSMEASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYL 60
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
DY KA++YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+L
Sbjct: 61 HDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISREL 120
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
NDK+ E RALYNLGNVYHAKGK+ G G QD GE+PEEV+ LQ A+ +YE+NL+L+ +
Sbjct: 121 NDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTAL 180
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
D AAQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFL
Sbjct: 181 GDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFL 240
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
GE++ ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L
Sbjct: 241 GEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373
DR+GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD G++TA++N++DL+ L
Sbjct: 301 NDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVL 360
Query: 374 GMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLIKLTPE 423
G+S + + + ++ R RR SME ++L+KLTPE
Sbjct: 361 GLSYSTNN-SIMSENTEIDSSLN----GVRPKLGRRHSMENMELMKLTPE 405
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} Length = 406 | Back alignment and structure |
|---|
Score = 211 bits (538), Expect = 2e-62
Identities = 83/326 (25%), Positives = 150/326 (46%), Gaps = 43/326 (13%)
Query: 36 GDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGD------------------ 75
G+ + Q I +D + LGN Y G
Sbjct: 101 GNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVR 160
Query: 76 --YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
Q A+ +++++L+L + D+ + ++ GNLGNT ++G + +A++ ++ L I+++
Sbjct: 161 DALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEF 220
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
DK +E RA NLGN Y G+ + A +YY++ L L +++
Sbjct: 221 GDKAAERRAYSNLGNAYIFLGE--------------------FETASEYYKKTLLLARQL 260
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
D A + ++C +LGNTY LL ++++AI YH + L IA+E D+ E RA +LGN++ L
Sbjct: 261 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTAL 320
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-RDYPTAIDYHLRHLIIAQQ 312
G + A ++ L +++++GD++ E A +L + +L Y T + I
Sbjct: 321 GNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMSENTEIDSS 380
Query: 313 LMDRVGEGRACWSLGNAHAARGNHEK 338
L + S+ N + EK
Sbjct: 381 LNGVRPKLGRRHSMENMELMKLTPEK 406
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 380 bits (977), Expect = e-127
Identities = 245/334 (73%), Positives = 296/334 (88%), Gaps = 3/334 (0%)
Query: 17 DGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY 76
G +MCLELALEGERLC AGDCRAGVAFFQAAIQAGT+DLRTLSAIYSQLGNAYFYLGDY
Sbjct: 43 GGSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDY 102
Query: 77 QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136
KAMQYHK DLTLA++M D+LGEAKSSGNLGNTLKVMG++DEA +CC+RHL ++RQL D+
Sbjct: 103 NKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDR 162
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196
LSEGRALYNLGNVYHAKGK +GQ++PG++ ++VK L A+++Y++NL LM+++ D
Sbjct: 163 LSEGRALYNLGNVYHAKGK---HLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDR 219
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
AQGRACGNLGNTYYLLG+F+ AI +HQERL+IAREFGD+AAERRANSNLGNSHIFLG++
Sbjct: 220 GAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQF 279
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR 316
+ A+EHYKRTL LA +LG+R VEAQ+CYSLGNTYTLL ++ TAI+YH RHL IAQ+L DR
Sbjct: 280 EDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDR 339
Query: 317 VGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350
+GE RACWSLGNAH+A G HE+AL +A +HL+++
Sbjct: 340 IGEARACWSLGNAHSAIGGHERALKYAEQHLQLA 373
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} Length = 411 | Back alignment and structure |
|---|
Score = 243 bits (623), Expect = 9e-75
Identities = 85/328 (25%), Positives = 138/328 (42%), Gaps = 41/328 (12%)
Query: 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114
+ +LSA + + LG H + + G L G
Sbjct: 5 SMSSLSASAENVSS--LGLGSGGGGTNSHDGNSQQGSGSDGGSSMCLELALEGERLCNAG 62
Query: 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174
+ + ++ + D + LGN Y G
Sbjct: 63 DCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGD------------------- 101
Query: 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234
+A++Y++ +L L K +ND + ++ GNLGNT ++G F +A + L +AR+ G
Sbjct: 102 -YNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLG 160
Query: 235 DKAAERRANSNLGNSHIFLGEYQA-----------------ASEHYKRTLVLAQDLGDRA 277
D+ +E RA NLGN + G++ A E Y+ L L +DLGDR
Sbjct: 161 DRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRG 220
Query: 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337
+ +AC +LGNTY LL D+ AI++H L IA++ DR E RA +LGN+H G E
Sbjct: 221 AQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFE 280
Query: 338 KALYFATKHLEISKQLGDPLGQVTAQMN 365
A + L ++ +LG+ + + +
Sbjct: 281 DAAEHYKRTLALAVELGEREVEAQSCYS 308
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} Length = 338 | Back alignment and structure |
|---|
Score = 370 bits (953), Expect = e-125
Identities = 241/338 (71%), Positives = 295/338 (87%)
Query: 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ 77
G CLELALEGERLCK+GDCRAGV+FF+AA+Q GT+DL+TLSAIYSQLGNAYFYL DY
Sbjct: 1 GSASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYA 60
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
KA++YH DLTLAR + D+LGEAK+SGNLGNTLKV+G +DEA+VCC+RHL+ISR+LNDK+
Sbjct: 61 KALEYHHHDLTLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV 120
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197
E RALYNLGNVYHAKGK+ G G QD GE+PE+V+ LQ A+ YE+NL+L+ + D A
Sbjct: 121 GEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRA 180
Query: 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
AQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAERRA SNLGN++IFLGE++
Sbjct: 181 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFE 240
Query: 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317
ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L DR+
Sbjct: 241 TASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRI 300
Query: 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 301 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 338
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 201 bits (512), Expect = 6e-59
Identities = 41/292 (14%), Positives = 101/292 (34%), Gaps = 26/292 (8%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G +Y A+++ K+ + ++D++ +A+ + + M + +M
Sbjct: 106 NFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDY 165
Query: 123 CKRHLEISRQLND-KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ EI ++ + + + + ++AI
Sbjct: 166 ARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQ--------------------YEDAIS 205
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
++++ ++ + GR N+G ++ AI Y + + + E + +
Sbjct: 206 HFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A + H LG+ A E++ + + +Q GD ++ + L + Y D AI
Sbjct: 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEF-LKSLYLSGPDE-EAIQ 323
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
L D + + R N +KA + K ++ + +
Sbjct: 324 GFFDFLESKMLYADL---EDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 184 bits (468), Expect = 1e-52
Identities = 49/310 (15%), Positives = 115/310 (37%), Gaps = 16/310 (5%)
Query: 60 SAIYSQLGNAYFYL--GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117
S+I ++ Y Y+ A ++ ME+ + +M +Y
Sbjct: 10 SSIGEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYL 69
Query: 118 EAM--VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175
E + + + +S L + + L L Y + + + D EY
Sbjct: 70 EPLEKMRIEEQPRLSDLLLEIDKKQARLTGLLEYYFNFFRGMY---ELDQREY------- 119
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
AIK++++ + + + D + + +YY + ++ Y ++ +I +E
Sbjct: 120 -LSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEA 178
Query: 236 KAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
+ +S + + L +Y+ A H+++ +A+ + + Y++G
Sbjct: 179 YNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQS 238
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
Y AI Y R + + ++ +A + + H G +KA + +K + S++ G
Sbjct: 239 QYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAG 298
Query: 355 DPLGQVTAQM 364
D + +
Sbjct: 299 DVIYLSEFEF 308
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 171 bits (435), Expect = 5e-48
Identities = 42/273 (15%), Positives = 98/273 (35%), Gaps = 28/273 (10%)
Query: 44 FFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED-KLGEA 100
FF+ A D + + ++ +Y+Y+ +M Y +Q + + E +
Sbjct: 125 FFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLL 184
Query: 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKV 160
+ + +Y++A+ ++ ++ GR LYN+G +++ +
Sbjct: 185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQ----- 239
Query: 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220
++AI Y+++ +A+ +E N + +A + +Y LG +A
Sbjct: 240 ---------------YEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAH 284
Query: 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280
YH + + +++ GD L + L E + + A
Sbjct: 285 EYHSKGMAYSQKAGDVIYLSEFE-FLKS----LYLSGPDEEAIQGFFDFLESKMLYADLE 339
Query: 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
+ Y +++ A Y L+ + Q +
Sbjct: 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQLI 372
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} Length = 383 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 7e-27
Identities = 23/186 (12%), Positives = 57/186 (30%), Gaps = 25/186 (13%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ + +G Y+ A+ Y K+ + + ++ +
Sbjct: 217 EKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK 276
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172
+GK D+A + + S++ D + L ++Y +
Sbjct: 277 LGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPD----------------- 318
Query: 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232
+EAI+ + L D ++ Y+ NF++A Y + ++ +
Sbjct: 319 ----EEAIQGFFDFLESKMLYADLE---DFAIDVAKYYHERKNFQKASAYFLKVEQVRQL 371
Query: 233 FGDKAA 238
+
Sbjct: 372 IQGGVS 377
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 191 bits (487), Expect = 4e-58
Identities = 115/161 (71%), Positives = 142/161 (88%)
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
AAQGRA GNLGNT+YLLGNF+ A+ H++RL IA+EFGDKAAER A SNLGN++IFLG
Sbjct: 4 SRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLG 63
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314
E++ ASE+YK+TL+LA+ L DRAVEAQ+CYSLGNTYTLL+DY AIDYHL+HL IAQ+L
Sbjct: 64 EFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELK 123
Query: 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355
DR+GEGRACWSLGNA+ A GNH++A++FA KHLEIS+++GD
Sbjct: 124 DRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGD 164
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 173 bits (442), Expect = 2e-51
Identities = 58/184 (31%), Positives = 97/184 (52%), Gaps = 20/184 (10%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111
G + LGN ++ LG+++ A+ H+Q L +A+ DK E + NLGN
Sbjct: 1 GPGSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYI 60
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
+G+++ A K+ L ++RQL D+ E ++ Y+LGN Y
Sbjct: 61 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQD---------------- 104
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
++AI Y+ ++LA+ +E+ D +GRAC +LGN Y LGN QA+++ ++ L+I+R
Sbjct: 105 ----YEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160
Query: 232 EFGD 235
E GD
Sbjct: 161 EVGD 164
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} Length = 164 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 2e-35
Identities = 51/162 (31%), Positives = 86/162 (53%), Gaps = 22/162 (13%)
Query: 36 GDCRAGVAFFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93
G+ R V + I D YS LGNAY +LG+++ A +Y+K+ L LAR +
Sbjct: 23 GNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153
+D+ EA+S +LGNT ++ Y++A+ +HL I+++L D++ EGRA ++LGN Y A
Sbjct: 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTAL 142
Query: 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195
G +A+ + E++L + +E+ D
Sbjct: 143 GN--------------------HDQAMHFAEKHLEISREVGD 164
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 191 bits (488), Expect = 1e-57
Identities = 42/198 (21%), Positives = 65/198 (32%), Gaps = 1/198 (0%)
Query: 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA 237
EA Y + A A LG Y + F +A Q + A++ GD
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDY 296
AE RA +G G + AA + L L + + + Y + D
Sbjct: 64 AEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDL 123
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356
A + + L+ AQQ D+V A LG+ N +A + +I +L D
Sbjct: 124 AGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDS 183
Query: 357 LGQVTAQMNVTDLRKALG 374
+ L
Sbjct: 184 EAVNELMTRLNGLEHHHH 201
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 189 bits (481), Expect = 1e-56
Identities = 35/220 (15%), Positives = 70/220 (31%), Gaps = 21/220 (9%)
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
+A Y + + + + LG M ++DEA + + +++ D
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHT 63
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDT 196
+E RAL+ +G V G A + + + L+ + D
Sbjct: 64 AEHRALHQVGMVERMAGN--------------------WDAARRCFLEERELLASLPEDP 103
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
A + G+ A +++ L A++ D+ A A LG+
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
A +H+ R + +L D + L +
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 2e-51
Identities = 41/220 (18%), Positives = 70/220 (31%), Gaps = 21/220 (9%)
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
EA + L + A + LG VY +
Sbjct: 4 EAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDR--------------------FD 43
Query: 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA 237
EA ++ ++ D A+ RA +G + GN+ A E ++ +
Sbjct: 44 EARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP 103
Query: 238 AERRAN-SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
AN + + G+ A + Y+++LV AQ D+ A A LG+ ++
Sbjct: 104 LAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL 163
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH 336
A + LR I +L D L +H
Sbjct: 164 LEAQQHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} Length = 203 | Back alignment and structure |
|---|
Score = 169 bits (431), Expect = 2e-49
Identities = 41/216 (18%), Positives = 68/216 (31%), Gaps = 23/216 (10%)
Query: 44 FFQAA--IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ A QA T S LG Y ++ + +A + A+ D E +
Sbjct: 8 YALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHR 67
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-NDKLSEGRALYNLGNVYHAKGKAIGKV 160
+ +G ++ G +D A C E+ L D L+ Y + V G
Sbjct: 68 ALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD----- 122
Query: 161 GQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220
L A + YE++L ++ +D A A LG+ N +A
Sbjct: 123 ---------------LAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQ 167
Query: 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
+ I E D A + L +
Sbjct: 168 QHWLRARDIFAELEDSEAVNELMTRLNGLEHHHHHH 203
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 170 bits (433), Expect = 1e-47
Identities = 40/294 (13%), Positives = 93/294 (31%), Gaps = 31/294 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G F +Y +A+ Y+++ + D + +A+ + M + +M
Sbjct: 104 LFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYH 163
Query: 123 CKRHLEI-SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
+ L+I + ++L+ + Y +A+
Sbjct: 164 ILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKH--------------------YDKALP 203
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+ E L L +I + + N+ N+Y G+ + A+ + Q+ K++RE +
Sbjct: 204 HLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPK 262
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA--QACYSLGNTYTLLRDYPTA 299
L + G+ Q A + + L + + ++ R
Sbjct: 263 VLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDL 322
Query: 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
+ Y ++ S + + E+A F K L+ + +
Sbjct: 323 LSYF-------EKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDI 369
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 2e-44
Identities = 42/291 (14%), Positives = 95/291 (32%), Gaps = 13/291 (4%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
A + + ME+ + ++M Y E ++ L
Sbjct: 26 FSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELL 85
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
+ + L L Y + + + Q EY EAI YY + + +
Sbjct: 86 ETIETPQKKLTGLLKYYSLFFRGMYEFDQ---KEY--------VEAIGYYREAEKELPFV 134
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-FGDKAAERRANSNLGNSHIF 252
+D + + YY + ++Y+ + L I + ++ + ++
Sbjct: 135 SDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDD 194
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312
Y A H + L LA D+ + A + ++ N+Y D A+++ + ++++
Sbjct: 195 FKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSRE 254
Query: 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363
+ + + + L G +KA F + L+ +
Sbjct: 255 KVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFL 304
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 104 bits (262), Expect = 1e-24
Identities = 21/200 (10%), Positives = 68/200 (34%), Gaps = 10/200 (5%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG- 234
+ +A + ++++ + + + L+ ++ + + R +
Sbjct: 28 VPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLET 87
Query: 235 --------DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
+ + G EY A +Y+ + D +A+ + +
Sbjct: 88 IETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKV 147
Query: 287 GNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345
Y ++ ++ + L+ L I Q + + ++ + + + +++KAL
Sbjct: 148 AEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEA 207
Query: 346 HLEISKQLGDPLGQVTAQMN 365
LE++ + + + +N
Sbjct: 208 ALELAMDIQNDRFIAISLLN 227
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} Length = 378 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 2e-23
Identities = 28/186 (15%), Positives = 62/186 (33%), Gaps = 30/186 (16%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ R ++ + N+Y GD Q A+++ ++ ++R L K L TL
Sbjct: 215 IQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCK 273
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRA--LYNLGNVYHAKGKAIGKVGQQDPGEYPE 170
G+ +A + L+ + K + L + + K
Sbjct: 274 AGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERK--------------- 318
Query: 171 EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230
+ + + Y+E + N A + + +F+QA ++++ LK
Sbjct: 319 -----IHDLLSYFE-------KKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQ 366
Query: 231 REFGDK 236
+
Sbjct: 367 EDILKG 372
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 133 bits (338), Expect = 4e-35
Identities = 59/321 (18%), Positives = 97/321 (30%), Gaps = 50/321 (15%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G + L L Y G Y+ A+ KQ L +E G A L
Sbjct: 20 GYEIPARLRT-LHNLVIQYASQGRYEVAVPLCKQALED---LEKTSGHDHPDVATMLNIL 75
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ KY +A L I + D + L NL +Y +GK
Sbjct: 76 ALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------- 126
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFKQA 219
+EA ++ L + +++ D A NL G +++
Sbjct: 127 -----------YKEAEPLCKRALEIREKVLGKDHPDVAK---QLNNLALLCQNQGKYEEV 172
Query: 220 IYYHQERLKIARE-FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-- 272
YY+Q L+I + G A + +NL + ++ G+++ A YK L A +
Sbjct: 173 EYYYQRALEIYQTKLGPDDPNVA---KTKNNLASCYLKQGKFKQAETLYKEILTRAHERE 229
Query: 273 LGDRAVE-AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
G E + +D +LG +
Sbjct: 230 FGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYR 289
Query: 332 ARGNHEKALYFATKHLEISKQ 352
+G E A + KQ
Sbjct: 290 RQGKFEAAETLEEAAMRSRKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 1e-31
Identities = 60/304 (19%), Positives = 94/304 (30%), Gaps = 47/304 (15%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQA-----GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+ G V + A++ G D + + L Y Y+ A
Sbjct: 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATM-LNILALVYRDQNKYKDAANLL 92
Query: 84 KQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDK 136
L + E LG+ A + NL GKY EA CKR LEI ++ D
Sbjct: 93 NDALAI---REKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH 149
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-- 194
+ L NL + +GK +E YY++ L + +
Sbjct: 150 PDVAKQLNNLALLCQNQGK--------------------YEEVEYYYQRALEIYQTKLGP 189
Query: 195 ---DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE--FGDKAAER-RANSNLGN 248
+ A + NL + Y G FKQA ++E L A E FG E +
Sbjct: 190 DDPNVA---KTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE 246
Query: 249 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
G+ + + + D +LG Y + A +
Sbjct: 247 REECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306
Query: 309 IAQQ 312
+Q
Sbjct: 307 SRKQ 310
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} Length = 311 | Back alignment and structure |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 54/301 (17%), Positives = 91/301 (30%), Gaps = 54/301 (17%)
Query: 80 MQYHKQDLTLARNM-EDKLGE-----AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
M +H + N+ G ++ NL G+Y+ A+ CK+ LE +
Sbjct: 1 MHHHHHHSSGRENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKT 60
Query: 134 --NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
+D L L VY + K ++A LA+ +
Sbjct: 61 SGHDHPDVATMLNILALVYRDQNK--------------------YKDAANLLNDALAIRE 100
Query: 192 EIN-----DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE-FGDK----AAERR 241
+ AA NL Y G +K+A + L+I + G A +
Sbjct: 101 KTLGKDHPAVAA---TLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQL- 156
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQD-LGDRAVE-AQACYSLGNTYTLLRDYPTA 299
+NL G+Y+ +Y+R L + Q LG A+ +L + Y + A
Sbjct: 157 --NNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQA 214
Query: 300 IDYHLRHLIIAQQLMDRVGE-----GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
+ L A + G +G + F K
Sbjct: 215 ETLYKEILTRAHE--REFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWY-KACK 271
Query: 355 D 355
Sbjct: 272 V 272
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 123 bits (309), Expect = 3e-31
Identities = 32/228 (14%), Positives = 67/228 (29%), Gaps = 23/228 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
Y++ A+ ++A + Q+ N AK+ G LK + + EA+
Sbjct: 39 YAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQY 98
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + + + AL G + D +A+
Sbjct: 99 IEKASVMYVENGTPDTAAMALDRAGKLME----------PLDL-----------SKAVHL 137
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+Q A+ + G F +A Q+ + +E + +
Sbjct: 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKK 197
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+ +Y AA + + + + G + A L Y
Sbjct: 198 CIAQVLVQLHRADYVAAQKCVRESYSIPGFSGSE--DCAALEDLLQAY 243
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 27/271 (9%), Positives = 69/271 (25%), Gaps = 29/271 (10%)
Query: 74 GDYQKAMQYHKQ-----DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE 128
+A ++ + + + D A K + ++A + E
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAE 64
Query: 129 ISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188
+A G + + + EA++Y E+
Sbjct: 65 AHANNRSLFHAAKAFEQAGMMLKDLQR--------------------MPEAVQYIEKASV 104
Query: 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248
+ E A G + +A++ +Q+ +
Sbjct: 105 MYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 249 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308
+ ++ A+ ++ + +++ + + C + DY A
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
Query: 309 IAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
I + A L A+ + E+
Sbjct: 224 IPGFSGSE--DCAALEDLLQAYDE-QDEEQL 251
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 28/246 (11%), Positives = 64/246 (26%), Gaps = 26/246 (10%)
Query: 114 GKYDEAMVCCKR---HLEIS-RQLNDKLSEGRALY-NLGNVYHAKGKAIGKVGQQDPGEY 168
K EA + +L+ S + + Y + +
Sbjct: 5 QKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQ------------- 51
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228
L++A Y Q +A G L +A+ Y ++
Sbjct: 52 -------LEQAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104
Query: 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288
+ E G A G + + A Y++ + ++ A+
Sbjct: 105 MYVENGTPDTAAMALDRAGK-LMEPLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASR 163
Query: 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348
+ + A + + +++ + + C + R ++ A +
Sbjct: 164 LLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYS 223
Query: 349 ISKQLG 354
I G
Sbjct: 224 IPGFSG 229
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 87.6 bits (217), Expect = 4e-19
Identities = 27/213 (12%), Positives = 62/213 (29%), Gaps = 24/213 (11%)
Query: 39 RAGVAFFQAA-IQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97
+A A+ Q A A L + + Q G L +A+QY ++ +
Sbjct: 54 QAKDAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPD 113
Query: 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
A + G ++ +A+ ++ + + + + K
Sbjct: 114 TAAMALDRAGKLME-PLDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQK-- 170
Query: 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217
EA ++ ++ KE+ + + C ++
Sbjct: 171 ------------------FDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYV 212
Query: 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250
A +E I G + + A +L ++
Sbjct: 213 AAQKCVRESYSIPGFSGSE--DCAALEDLLQAY 243
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 87.3 bits (216), Expect = 4e-19
Identities = 25/205 (12%), Positives = 57/205 (27%), Gaps = 3/205 (1%)
Query: 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
E + +A KY + + K D+AA + +QA + + +
Sbjct: 8 SEAHEHIAKAEKYLKTSFMKWKPDYDSAAS--EYAKAAVAFKNAKQLEQAKDAYLQEAEA 65
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
+A G L A ++ ++ V+ + G A A G
Sbjct: 66 HANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKL 125
Query: 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L D A+ + + + + + ++A K +
Sbjct: 126 MEPL-DLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSM 184
Query: 350 SKQLGDPLGQVTAQMNVTDLRKALG 374
K++ + + ++
Sbjct: 185 YKEMENYPTCYKKCIAQVLVQLHRA 209
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} Length = 307 | Back alignment and structure |
|---|
Score = 69.5 bits (170), Expect = 4e-13
Identities = 25/184 (13%), Positives = 49/184 (26%), Gaps = 25/184 (13%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQ--AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQD 86
G L V + + A T + + G D KA+ ++Q
Sbjct: 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLM-EPLDLSKAVHLYQQA 141
Query: 87 LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNL 146
+ N E A+ G L K+DEA ++ + +++ + + +
Sbjct: 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQ 201
Query: 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNL 206
V + A K + + + A +L
Sbjct: 202 VLVQLHRAD--------------------YVAAQKCVRE--SYSIPGFSGSEDCAALEDL 239
Query: 207 GNTY 210
Y
Sbjct: 240 LQAY 243
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 8e-31
Identities = 57/306 (18%), Positives = 88/306 (28%), Gaps = 49/306 (16%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNLGNTLKVMGKYDEAM 120
+ L A+ KQ L +E G A L + KY EA
Sbjct: 7 HHHHSSGLVPRGSAVPLCKQALED---LEKTSGHDHPDVATMLNILALVYRDQNKYKEAA 63
Query: 121 VCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178
L I + D + L NL +Y +GK +E
Sbjct: 64 HLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGK--------------------YKE 103
Query: 179 AIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE- 232
A ++ L + +++ D A Q NL G ++ YY++ L+I
Sbjct: 104 AEPLCKRALEIREKVLGKFHPDVAKQ---LNNLALLCQNQGKAEEVEYYYRRALEIYATR 160
Query: 233 FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD--LGDRAVE-AQACYS 285
G A +NL + ++ G+YQ A YK L A + G +
Sbjct: 161 LGPDDPNVAK---TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMH 217
Query: 286 LGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345
+ Y +D SLG + +G E A
Sbjct: 218 AEEREESKDKRRDSAPYGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDC 277
Query: 346 HLEISK 351
K
Sbjct: 278 ASRNRK 283
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 5e-30
Identities = 51/275 (18%), Positives = 81/275 (29%), Gaps = 46/275 (16%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G D + + L Y Y++A L + E LG+ A + NL
Sbjct: 36 GHDHPDVATM-LNILALVYRDQNKYKEAAHLLNDALAI---REKTLGKDHPAVAATLNNL 91
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
GKY EA CKR LEI ++ + L NL + +GK
Sbjct: 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--------- 142
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEI-----NDTAAQGRACGNLGNTYYLLGNFKQA 219
+E YY + L + + A NL + Y G ++ A
Sbjct: 143 -----------AEEVEYYYRRALEIYATRLGPDDPNVAK---TKNNLASCYLKQGKYQDA 188
Query: 220 IYYHQERLKIARE--FGDKAAERRANS--NLGNSHIFLGEYQAASEHYKRTLVLAQDLG- 274
++E L A E FG + + + + ++ + + +
Sbjct: 189 ETLYKEILTRAHEKEFGSVNGD-NKPIWMHAEEREESKDKRRDSAPYGEYGSWY-KACKV 246
Query: 275 DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
D SLG Y A
Sbjct: 247 DSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 98.8 bits (247), Expect = 4e-23
Identities = 45/271 (16%), Positives = 78/271 (28%), Gaps = 50/271 (18%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162
+ + + A+ CK+ LE + +D L L VY + K
Sbjct: 6 HHHHHSSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNK------- 58
Query: 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-----DTAAQGRACGNLGNTYYLLGNFK 217
+EA LA+ ++ AA NL Y G +K
Sbjct: 59 -------------YKEAAHLLNDALAIREKTLGKDHPAVAA---TLNNLAVLYGKRGKYK 102
Query: 218 QAIYYHQERLKIARE-FGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272
+A + L+I + G A + +NL G+ + +Y+R L +
Sbjct: 103 EAEPLCKRALEIREKVLGKFHPDVAKQL---NNLALLCQNQGKAEEVEYYYRRALEIYAT 159
Query: 273 -LGDR--AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE-----GRACW 324
LG V A+ +L + Y Y A + L A + G
Sbjct: 160 RLGPDDPNV-AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKE--FGSVNGDNKPIWM 216
Query: 325 SLGNAHAARGNHEKALYFATKHLEISKQLGD 355
++ + + K
Sbjct: 217 HAEEREESKDKRRDSAPYGEYGSWY-KACKV 246
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A Length = 283 | Back alignment and structure |
|---|
Score = 54.1 bits (131), Expect = 4e-08
Identities = 8/85 (9%), Positives = 19/85 (22%), Gaps = 11/85 (12%)
Query: 52 GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGE-----AKSSGNL 106
G+ + I+ + + Y + + +L
Sbjct: 205 GSVNGDNKP-IWMHAEEREESKDKRRDSAPYGEYGS-----WYKACKVDSPTVNTTLRSL 258
Query: 107 GNTLKVMGKYDEAMVCCKRHLEISR 131
G + GK + A +
Sbjct: 259 GALYRRQGKLEAAHTLEDCASRNRK 283
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 114 bits (289), Expect = 6e-28
Identities = 57/321 (17%), Positives = 107/321 (33%), Gaps = 60/321 (18%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
R +AGD A + D+ + + L + +F ++ + +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+ A++ NLGN K G+ EA+ + L + + NL
Sbjct: 62 QNPLL------AEAYSNLGNVYKERGQLQEAIEHYRHALRL----KPDFID--GYINLAA 109
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
A G ++ A++ Y AL + N +LGN
Sbjct: 110 ALVAAGD--------------------MEGAVQAYVS--AL--QYNPDLYC--VRSDLGN 143
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
LG ++A + + ++ F A SNLG GE A H+++ +
Sbjct: 144 LLKALGRLEEAKACYLKAIETQPNFAV------AWSNLGCVFNAQGEIWLAIHHFEKAVT 197
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
L + A +LGN R + A+ +LR L ++ +L
Sbjct: 198 LDPNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLAC 245
Query: 329 AHAARGNHEKALYFATKHLEI 349
+ +G + A+ + +E+
Sbjct: 246 VYYEQGLIDLAIDTYRRAIEL 266
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 3e-27
Identities = 64/321 (19%), Positives = 113/321 (35%), Gaps = 60/321 (18%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + G + + ++ A++ D Y L A GD + A+Q + L
Sbjct: 74 GNVYKERGQLQEAIEHYRHALRLKPDF----IDGYINLAAALVAAGDMEGAVQAYVSALQ 129
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
++ +LGN LK +G+ +EA C + +E + A NLG
Sbjct: 130 YNPDL------YCVRSDLGNLLKALGRLEEAKACYLKAIET----QPNFAV--AWSNLGC 177
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
V++A+G+ + AI ++E+ A+ ++ A NLGN
Sbjct: 178 VFNAQGE--------------------IWLAIHHFEK--AV--TLDPNFLD--AYINLGN 211
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
F +A+ + L ++ + NL + G A + Y+R +
Sbjct: 212 VLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAIE 265
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
L A +L N A D + L + D + +L N
Sbjct: 266 LQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHAD------SLNNLAN 313
Query: 329 AHAARGNHEKALYFATKHLEI 349
+GN E+A+ K LE+
Sbjct: 314 IKREQGNIEEAVRLYRKALEV 334
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 110 bits (278), Expect = 2e-26
Identities = 56/294 (19%), Positives = 100/294 (34%), Gaps = 60/294 (20%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
A + AI+ + + +S LG + G+ A+ + ++ +TL N
Sbjct: 155 KACYLKAIETQPNF----AVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNF------LD 204
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
+ NLGN LK +D A+ R L +S NL VY+ +G
Sbjct: 205 AYINLGNVLKEARIFDRAVAAYLRALSLSPNHAV------VHGNLACVYYEQGL------ 252
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+ AI Y + A+ E+ A NL N G+ +A
Sbjct: 253 --------------IDLAIDTYRR--AI--ELQPHFPD--AYCNLANALKEKGSVAEAED 292
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
+ L++ D + +NL N G + A Y++ L + + A
Sbjct: 293 CYNTALRLCPTHAD------SLNNLANIKREQGNIEEAVRLYRKALEVFPEF------AA 340
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335
A +L + A+ ++ + I+ D A ++GN +
Sbjct: 341 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------AYSNMGNTLKEMQD 388
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388 | Back alignment and structure |
|---|
Score = 104 bits (263), Expect = 1e-24
Identities = 49/287 (17%), Positives = 94/287 (32%), Gaps = 56/287 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+L + + GD++ A ++ Q + L + + D +
Sbjct: 2 PMELAHREYQAGDFEAAERHCMQLW------RQEPDNTGVLLLLSSIHFQCRRLDRSAHF 55
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + L + A NLGNVY +G+ LQEAI++
Sbjct: 56 STLAIKQNPLLAE------AYSNLGNVYKERGQ--------------------LQEAIEH 89
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y L + NL G+ + A+ + L+ +
Sbjct: 90 YRHAL----RLKPDFID--GYINLAAALVAAGDMEGAVQAYVSALQYNPDLYC------V 137
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
S+LGN LG + A Y + + + A A +LG + + AI +
Sbjct: 138 RSDLGNLLKALGRLEEAKACYLKAIETQPNF------AVAWSNLGCVFNAQGEIWLAIHH 191
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + +D A +LGN ++A+ + L +
Sbjct: 192 FEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRALSL 232
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 2e-27
Identities = 52/308 (16%), Positives = 97/308 (31%), Gaps = 52/308 (16%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ L ++Y D++ + + L TL + K +E
Sbjct: 24 VVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCL------PVHIGTLVELNKANELFY 77
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK----AI---GKVGQQDPG-------- 166
+ +++ + + +G Y G A K +
Sbjct: 78 LSHKLVDLYPSNPV------SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAY 131
Query: 167 --EYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ E + +A+ Y LMK +G Y L N K A +
Sbjct: 132 GHSFAVESE--HDQAMAAYFTAAQLMK---GCH---LPMLYIGLEYGLTNNSKLAERFFS 183
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE---AQ 281
+ L IA E +G GE++ A + + L + +G+
Sbjct: 184 QALSIAPEDPF------VMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEP 237
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341
+LG+ L+ Y A+DYH + L++ Q ++G H+ GN E A+
Sbjct: 238 LLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAVD 291
Query: 342 FATKHLEI 349
+ L +
Sbjct: 292 YFHTALGL 299
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 8e-17
Identities = 30/182 (16%), Positives = 64/182 (35%), Gaps = 39/182 (21%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FF A+ +D + ++G F G+++ A ++ L + + +++ K
Sbjct: 179 ERFFSQALSIAPED----PFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234
Query: 102 SSG---NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
NLG+ + + KY EA+ ++ L + Q +G ++ G
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGN--- 285
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218
+ A+ Y+ L L + +DT + LG+ + +
Sbjct: 286 -----------------FENAVDYFHTALGLRR--DDTFSV----TMLGHCIEMYIGDSE 322
Query: 219 AI 220
A
Sbjct: 323 AY 324
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 107 bits (270), Expect = 1e-26
Identities = 44/258 (17%), Positives = 72/258 (27%), Gaps = 50/258 (19%)
Query: 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104
+ S Q GDY+KA + + + + +A
Sbjct: 8 HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE------DAIPYI 61
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
N N L + + + A+ + LE+ + + A Y GNVY K
Sbjct: 62 NFANLLSSVNELERALAFYDKALEL----DSSAAT--AYYGAGNVYVVKEM--------- 106
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+EA +E+ AL LG L K A+ Y Q
Sbjct: 107 -----------YKEAKDMFEK--AL--RAGMENGD--LFYMLGTVLVKLEQPKLALPYLQ 149
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+++ + A G G A + A A Y
Sbjct: 150 RAVELNENDTE------ARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFY 197
Query: 285 SLGNTYTLLRDYPTAIDY 302
+ G TY + A++
Sbjct: 198 NAGVTYAYKENREKALEM 215
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 4e-24
Identities = 41/268 (15%), Positives = 81/268 (30%), Gaps = 54/268 (20%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
R + GD F AI+ +D + Y N + + ++A+ ++ + L
Sbjct: 30 MGRGSEFGDYEKAAEAFTKAIEENKED----AIPYINFANLLSSVNELERALAFYDKALE 85
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L + A + GN V Y EA ++ L + + Y LG
Sbjct: 86 LDSSA------ATAYYGAGNVYVVKEMYKEAKDMFEKALRA----GMENGD--LFYMLGT 133
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
V + + A+ Y ++ A+ E+N+ + A G
Sbjct: 134 VLVKLEQ--------------------PKLALPYLQR--AV--ELNENDTE--ARFQFGM 167
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
G +A+ + D A N G ++ + + A E + +
Sbjct: 168 CLANEGMLDEALSQFAAVTEQDPGHAD------AFYNAGVTYAYKENREKALEMLDKAID 221
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDY 296
+ D A ++ +
Sbjct: 222 IQPDH------MLALHAKKLLGHHHHHH 243
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 90.3 bits (225), Expect = 2e-20
Identities = 47/276 (17%), Positives = 91/276 (32%), Gaps = 59/276 (21%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
+ + + +A G G Y++A + +E
Sbjct: 6 HHHHHSSGLVPRGSHMASMT---------GGQQMGRGSEFGDYEKAAEAFTKAIEE---- 52
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
N + + N N+ + + L+ A+ +Y++ AL E+
Sbjct: 53 NKEDAI--PYINFANLLSSVNE--------------------LERALAFYDK--AL--EL 86
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
+ +AA A GN Y + +K+A ++ L+ E GD LG + L
Sbjct: 87 DSSAAT--AYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD------LFYMLGTVLVKL 138
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313
+ + A + +R + L ++ +A + G A+
Sbjct: 139 EQPKLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH 192
Query: 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
D A ++ G +A + N EKAL K ++I
Sbjct: 193 AD------AFYNAGVTYAYKENREKALEMLDKAIDI 222
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243 | Back alignment and structure |
|---|
Score = 60.6 bits (148), Expect = 2e-10
Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 20/174 (11%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+ + ++ + L+ + G G++++A + ++ +E
Sbjct: 1 MGSSHHHHHHSSGLVP--RGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAI 58
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
N N + E + A Y + L L A A Y GN Y +
Sbjct: 59 ------PYINFANLLSSVNELERALAFYDKALELDSSA------ATAYYGAGNVYVVKEM 106
Query: 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y A D + L + D + LG + AL + + +E+
Sbjct: 107 YKEAKDMFEKALRAGMENGD------LFYMLGTVLVKLEQPKLALPYLQRAVEL 154
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 6e-26
Identities = 48/322 (14%), Positives = 92/322 (28%), Gaps = 55/322 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ L +A ++ +L +Y + G+ K +
Sbjct: 312 ADTLFVRSRFIDVLAITTKILEIDPYNL----DVYPLHLASLHESGEKNKLYLISNDLVD 367
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+A + +G + K EA + + Q G A +
Sbjct: 368 RHPE------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQF------GPAWIGFAH 415
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ +G+ +AI Y L + T LG
Sbjct: 416 SFAIEGE--------------------HDQAISAYTTAARLFQ---GTH---LPYLFLGM 449
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ LGN A Y Q + + + LG + Q A H++ L+
Sbjct: 450 QHMQLGNILLANEYLQSSYALFQYDPL------LLNELGVVAFNKSDMQTAINHFQNALL 503
Query: 269 LAQDLGDRAVE-AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLG 327
L + A +LG+ Y L+ Y AID + L+++ + ++
Sbjct: 504 LVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN------DANVHTAIA 557
Query: 328 NAHAARGNHEKALYFATKHLEI 349
+ + A+ + L I
Sbjct: 558 LVYLHKKIPGLAITHLHESLAI 579
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 97.6 bits (243), Expect = 2e-21
Identities = 43/307 (14%), Positives = 82/307 (26%), Gaps = 57/307 (18%)
Query: 50 QAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109
+D L ++Y N + + ++A Y L ++ + L +T
Sbjct: 262 TYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLL-------CKADT 314
Query: 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169
L V ++ + + + LEI D H G+
Sbjct: 315 LFVRSRFIDVLAITTKILEIDPYNLD------VYPLHLASLHESGE-------------- 354
Query: 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
+ + + + A +G Y + +A Y + +
Sbjct: 355 ------KNKLYLISND--LV--DRHPEKAV--TWLAVGIYYLCVNKISEARRYFSKSSTM 402
Query: 230 AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
+FG A +S GE+ A Y L Q LG
Sbjct: 403 DPQFGP------AWIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQ 450
Query: 290 YTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ L + A +Y + Q LG + + + A+ L +
Sbjct: 451 HMQLGNILLANEYLQSSYALFQYD------PLLLNELGVVAFNKSDMQTAINHFQNALLL 504
Query: 350 SKQLGDP 356
K+
Sbjct: 505 VKKTQSN 511
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 92.6 bits (230), Expect = 7e-20
Identities = 32/229 (13%), Positives = 66/229 (28%), Gaps = 45/229 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +++ G++ +A+ + L + LG +G A
Sbjct: 410 WIGFAHSFAIEGEHDQAISAYTTAARLFQGT------HLPYLFLGMQHMQLGNILLANEY 463
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L LG V K +Q AI +
Sbjct: 464 LQSSYAL----FQYDPL--LLNELGVVAFNKSD--------------------MQTAINH 497
Query: 183 YEQNLALMKEINDTA-AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
++ L L+K+ NLG+ Y L + AI + L ++ +
Sbjct: 498 FQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN------ 551
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
++ + ++ A H +L ++ + E A L
Sbjct: 552 VHTAIALVYLHKKIPGLAITHLHESLAISPN------EIMASDLLKRAL 594
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 81.0 bits (200), Expect = 3e-16
Identities = 52/378 (13%), Positives = 109/378 (28%), Gaps = 71/378 (18%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
L L GE D + ++ +++ G Y L ++ +A + +K
Sbjct: 170 LNLLGETNPFRKDEKNANKLLMQDGG-----IKLEASMCYLRGQVYTNLSNFDRAKECYK 224
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
+ A ++ K EA + L ++D + L S + + R+LY
Sbjct: 225 E----ALMVDAKCYEAFDQLVSNHLLTADEEWDLVL-----KLNYSTYSKEDAAFLRSLY 275
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
L + + + Y ++ +++ +D
Sbjct: 276 MLKLNKTSHEDEL--------------------RRAEDYLSSINGLEKSSD------LLL 309
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+T ++ F + + L+I D S GE
Sbjct: 310 CKADTLFVRSRFIDVLAITTKILEIDPYNLD------VYPLHLASLHESGEKNKLYLISN 363
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
+ + +A ++G Y + A Y + + + + G A
Sbjct: 364 DLVDRHPE------KAVTWLAVGIYYLCVNKISEARRYFSK----SSTMDPQFGP--AWI 411
Query: 325 SLGNAHAARGNHEKALYFATKHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMS 376
++ A G H++A+ T + + P LG Q+ L+ +
Sbjct: 412 GFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSY--- 468
Query: 377 TNDLSPDSLQLINSYANA 394
L L+N
Sbjct: 469 --ALFQYDPLLLNELGVV 484
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 4e-10
Identities = 46/285 (16%), Positives = 85/285 (29%), Gaps = 39/285 (13%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ Y+ A ++ L + N D L G Y A
Sbjct: 89 LWRHDALMQQQYKCAAFVGEKVLDITGNPNDAF-------WLAQVYCCTGDYARAKCLLT 141
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ +R + L L + + A+ +G+ +P ++ K
Sbjct: 142 KEDLYNRSSACRYLAAFCLVKLYD-WQ---GALNLLGETNP----------FRKDEKNAN 187
Query: 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANS 244
+ L I A+ C G Y L NF +A ++E L + + + A
Sbjct: 188 KLLMQDGGIKLEAS---MCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYE------AFD 238
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
L ++H+ + + L + + A ++ Y L T D + +L
Sbjct: 239 QLVSNHLLTADEEWDLVL---KLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYL 295
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ ++ D + R L TK LEI
Sbjct: 296 SSINGLEKSSD------LLLCKADTLFVRSRFIDVLAITTKILEI 334
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597 | Back alignment and structure |
|---|
Score = 58.7 bits (142), Expect = 3e-09
Identities = 24/122 (19%), Positives = 36/122 (29%), Gaps = 15/122 (12%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLR---TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
D + + FQ A+ +A ++ LG+AY L Y A+ Q L
Sbjct: 485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLL 544
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L+ N +A + A+ L IS E A L
Sbjct: 545 LSTN------DANVHTAIALVYLHKKIPGLAITHLHESLAISPN------EIMASDLLKR 592
Query: 149 VY 150
Sbjct: 593 AL 594
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 106 bits (266), Expect = 8e-26
Identities = 39/292 (13%), Positives = 81/292 (27%), Gaps = 52/292 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ + F +Y +A++ + N + KYD A
Sbjct: 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYN------SPYIYNRRAVCYYELAKYDLAQKD 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + S G + KG+ AI+
Sbjct: 60 IETYFSKV-NATKAKSA--DFEYYGKILMKKGQ--------------------DSLAIQQ 96
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+ A+ + + T G +G+ +Y GNF AI Y +++++
Sbjct: 97 YQA--AV--DRDTTRLD--MYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK------V 144
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD---YPTA 299
LG ++ + EY A + + L L ++ A
Sbjct: 145 FYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLA 198
Query: 300 IDYHLRHLIIAQQLMDRVGE--GRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y+ + + + + + A + + + KA L +
Sbjct: 199 KPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL 250
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 37/279 (13%), Positives = 79/279 (28%), Gaps = 50/279 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ L K + + F + IY++ Y+ L Y A + +
Sbjct: 10 ADFLFKNNNYAEAIEVFNKLEAKKYNS----PYIYNRRAVCYYELAKYDLAQKDI-ETYF 64
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
N G L G+ A+ + ++ + + +G+
Sbjct: 65 SKVNATKAKSADFE--YYGKILMKKGQDSLAIQQYQAAVDR----DTTRLD--MYGQIGS 116
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
++ KG AI+Y E+ + T + LG
Sbjct: 117 YFYNKGN--------------------FPLAIQYMEKQI----RPTTTDPK--VFYELGQ 150
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG---EYQAASEHYKR 265
YY + +A + L++ ++ + A +Y++
Sbjct: 151 AYYYNKEYVKADSSFVKVLELKPNIYI------GYLWRARANAAQDPDTKQGLAKPYYEK 204
Query: 266 TLVLAQDLGDRAVE--AQACYSLGNTYTLLRDYPTAIDY 302
+ + G + + +A + YT+ RD A
Sbjct: 205 LIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA 243
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 1e-19
Identities = 28/239 (11%), Positives = 58/239 (24%), Gaps = 49/239 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G G A+Q ++ + G +G+ G + A+
Sbjct: 77 FEYYGKILMKKGQDSLAIQQYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQY 130
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + + Y LG Y+ + +A
Sbjct: 131 MEKQIRPTTTDPK------VFYELGQAYYYNKE--------------------YVKADSS 164
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGN---FKQAIYYHQERLKIAREFGD--KA 237
+ + L L I A Y+++ +++ G K
Sbjct: 165 FVKVLELKPNIYI------GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKD 218
Query: 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
AN + + + A +K L L +A L +
Sbjct: 219 ELIEANEYIAYYYTINRDKVKADAAWKNILALDPTN------KKAIDGLKMKLEHHHHH 271
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 72.3 bits (178), Expect = 3e-14
Identities = 29/263 (11%), Positives = 62/263 (23%), Gaps = 52/263 (19%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ + EAI+ + + +
Sbjct: 5 VEFRYADFLFKNNN--------------------YAEAIEVFNKLE----AKKYNSPY-- 38
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
YY L + A + K+ G + G+ A +
Sbjct: 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKS---ADFEYYGKILMKKGQDSLAIQ 95
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
Y+ + +G+ + ++P AI Y + +
Sbjct: 96 QYQAAVDRDTT------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPK------ 143
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP---LGQVTAQMN--------VTDLR 370
+ LG A+ + KA K LE+ + + A +
Sbjct: 144 VFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYE 203
Query: 371 KALGMSTNDLSPDSLQLINSYAN 393
K + + + +LI +
Sbjct: 204 KLIEVCAPGGAKYKDELIEANEY 226
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272 | Back alignment and structure |
|---|
Score = 59.6 bits (145), Expect = 5e-10
Identities = 27/181 (14%), Positives = 52/181 (28%), Gaps = 45/181 (24%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ + + I+ T D ++ +LG AY+Y +Y KA + L L N+
Sbjct: 128 IQYMEKQIRPTTTD----PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YI 177
Query: 102 SSGNLGNTLKVMG---KYDEAMVCCKRHLEI----SRQLNDKLSEGRALYNLGNVYHAKG 154
K A ++ +E+ + D+L E A + Y
Sbjct: 178 GYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIE--ANEYIAYYYTINR 235
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+A ++ L ++ T + A L
Sbjct: 236 D--------------------KVKADAAWKN--IL--ALDPTNKK--AIDGLKMKLEHHH 269
Query: 215 N 215
+
Sbjct: 270 H 270
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 7e-25
Identities = 37/238 (15%), Positives = 67/238 (28%), Gaps = 40/238 (16%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LG + LG Y A+ ++ L ++ L T +G + A+
Sbjct: 8 PLRLGVQLYALGRYDAALTLFERALKENPQD------PEALYWLARTQLKLGLVNPALEN 61
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K + + L Y A + ++ G ++A+
Sbjct: 62 GKTLVAR----TPRYLG--GYMVLSEAYVALYRQAEDR-ERGKGYL--------EQALSV 106
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+ A +N A G Y LLG +A ++ L + + E
Sbjct: 107 LKD--AE--RVNPRYAP--LHLQRGLVYALLGERDKAEASLKQALAL-----EDTPE--I 153
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300
S L ++ +G A Y + L A + L A
Sbjct: 154 RSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASALLLKGKAEEAA 205
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 96.5 bits (241), Expect = 5e-23
Identities = 40/241 (16%), Positives = 68/241 (28%), Gaps = 50/241 (20%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
LG L +G+YD A+ +R L+ + Q + ALY L G
Sbjct: 10 RLGVQLYALGRYDAALTLFERALKENPQDPE------ALYWLARTQLKLGL--------- 54
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ A++ + + L Y L + +
Sbjct: 55 -----------VNPALENGKT--LV--ARTPRYLG--GYMVLSEAYVALYRQAEDRERGK 97
Query: 225 ERLKIAREFGDKAAERRAN-----SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279
L+ A A G + LGE A K+ L L
Sbjct: 98 GYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT------- 150
Query: 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339
+ +L Y + A+ + + L A + +D +A +G E+A
Sbjct: 151 PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLD------LRVRYASALLLKGKAEEA 204
Query: 340 L 340
Sbjct: 205 A 205
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 36/219 (16%), Positives = 59/219 (26%), Gaps = 56/219 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LG +A G+ A+ +E+ AL + N +
Sbjct: 7 NPLRLGVQLYALGR--------------------YDAALTLFER--AL--KENPQDPE-- 40
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-------- 253
A L T LG A+ + + + L +++ L
Sbjct: 41 ALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------GYMVLSEAYVALYRQAEDRE 94
Query: 254 ---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310
G + A K + A G Y LL + A + A
Sbjct: 95 RGKGYLEQALSVLKDAERVNPRY------APLHLQRGLVYALLGERDKAEASLKQ----A 144
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L D +L + + G ++AL K LE
Sbjct: 145 LALEDTP---EIRSALAELYLSMGRLDEALAQYAKALEQ 180
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217 | Back alignment and structure |
|---|
Score = 61.0 bits (149), Expect = 8e-11
Identities = 25/125 (20%), Positives = 35/125 (28%), Gaps = 33/125 (26%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ Q G Y LG+ KA KQ L L + L MG+ DEA+
Sbjct: 121 HLQRGLVYALLGERDKAEASLKQALALEDT-------PEIRSALAELYLSMGRLDEALAQ 173
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ LE K + + KGK +EA +
Sbjct: 174 YAKALEQ----APKDLD--LRVRYASALLLKGK--------------------AEEAARA 207
Query: 183 YEQNL 187
Sbjct: 208 AALEH 212
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-24
Identities = 37/244 (15%), Positives = 72/244 (29%), Gaps = 48/244 (19%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
Y QLG Y G+ ++A ++ L + + A + L + + A
Sbjct: 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSS------ADAHAALAVVFQTEMEPKLADE 92
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ L + R L N G + + + +EA +
Sbjct: 93 EYRKALASDSRN------ARVLNNYGGFLYEQKR--------------------YEEAYQ 126
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+ A + ++ NLG + QA Y ++ L++ R
Sbjct: 127 RLLE--ASQDTLYPERSR--VFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPS------ 176
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
+ + EY A ++Y A++ + D TA
Sbjct: 177 VALEMADLLYKEREYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDRDTAAS 230
Query: 302 YHLR 305
Y L+
Sbjct: 231 YGLQ 234
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 95.4 bits (238), Expect = 3e-22
Identities = 41/284 (14%), Positives = 85/284 (29%), Gaps = 55/284 (19%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
+ G + K D+ +A LG G ++A V ++
Sbjct: 10 HSSGLVPRGSHMGDQNPLK-----TDKGRDEARDAYI--QLGLGYLQRGNTEQAKVPLRK 62
Query: 126 HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185
LEI + ++ A L V+ + + + A + Y +
Sbjct: 63 ALEI----DPSSAD--AHAALAVVFQTEME--------------------PKLADEEYRK 96
Query: 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSN 245
AL + A+ N G Y +++A +RL A + R N
Sbjct: 97 --AL--ASDSRNAR--VLNNYGGFLYEQKRYEEAY----QRLLEASQDTLYPERSRVFEN 146
Query: 246 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305
LG + + + A E+++++L L ++ + + R+Y A Y+
Sbjct: 147 LGLVSLQMKKPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDL 200
Query: 306 HLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Q + + + A + + +
Sbjct: 201 FAQGGGQNAR------SLLLGIRLAKVFEDRDTAASYGLQLKRL 238
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 86.6 bits (215), Expect = 3e-19
Identities = 29/220 (13%), Positives = 63/220 (28%), Gaps = 46/220 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
++ L + + + A + +++ L + N G L +Y+EA
Sbjct: 74 HAALAVVFQTEMEPKLADEEYRKALASDSR----NARVLN--NYGGFLYEQKRYEEAYQR 127
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L + S NLG V K +A +Y
Sbjct: 128 LLEASQDT--LYPERSR--VFENLGLVSLQMKK--------------------PAQAKEY 163
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+E+ +L +N Q + + Y + A Y+ + + +
Sbjct: 164 FEK--SL--RLN--RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR------S 211
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282
+ A+ + + L ++E Q
Sbjct: 212 LLLGIRLAKVFEDRDTAASYGLQLKRLYPG----SLEYQE 247
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252 | Back alignment and structure |
|---|
Score = 57.7 bits (140), Expect = 2e-09
Identities = 17/124 (13%), Positives = 32/124 (25%), Gaps = 14/124 (11%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
L + A Q R+ + LG + +A +Y ++ L L R
Sbjct: 115 LYEQKRYEEAYQRLLEASQDTLYPERSRV--FENLGLVSLQMKKPAQAKEYFEKSLRLNR 172
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
N + + + L +Y A + Q +L +
Sbjct: 173 NQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQNAR------SLLLGIRLAK 220
Query: 152 AKGK 155
Sbjct: 221 VFED 224
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 99 bits (250), Expect = 1e-23
Identities = 34/278 (12%), Positives = 81/278 (29%), Gaps = 58/278 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN ++ + +A++++ + L +++ N G+Y+ A+
Sbjct: 8 EKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-------YLNNRAAAEYEKGEYETAIST 60
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+E R++ + + G A L++ I+Y
Sbjct: 61 LNDAVEQGREMRA------DYKVISKSFARIGNA-------------YHKLGDLKKTIEY 101
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y+++L + L N ++ + + + E +
Sbjct: 102 YQKSLTEH--------------RTADILTKLRNAEKELKKAEAEAYVNPEKAE------E 141
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
G + ++ A + Y + A + +A+ + L +P AI
Sbjct: 142 ARLEGKEYFTKSDWPNAVKAYTEMIKRAPE------DARGYSNRAAALAKLMSFPEAIAD 195
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ + + A A A + AL
Sbjct: 196 CNKAIEKDPNFVR------AYIRKATAQIAVKEYASAL 227
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 94.5 bits (236), Expect = 6e-22
Identities = 37/284 (13%), Positives = 81/284 (28%), Gaps = 56/284 (19%)
Query: 18 GGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQ 77
GG+M + EG + KA + + A + D + A + G+Y+
Sbjct: 1 GGSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKD-----ITYLNNRAAAEYEKGEYE 55
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137
A+ + R M + + +G + K+ +E K
Sbjct: 56 TAISTLNDAVEQGREM------RADYKVISKSFARIGNAYHKLGDLKKTIEY----YQKS 105
Query: 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA 197
+ ++ ++ +K E +N
Sbjct: 106 L---TEHRTADILTKLRN--------------------AEKELKKAEAEA----YVNPEK 138
Query: 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
A+ G Y+ ++ A+ + E +K A E SN + L +
Sbjct: 139 AE--EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------GYSNRAAALAKLMSFP 190
Query: 258 AASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A + + + +A +++Y +A++
Sbjct: 191 EAIADCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALE 228
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 5e-19
Identities = 32/238 (13%), Positives = 66/238 (27%), Gaps = 49/238 (20%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ G+ ++ A++ G + A Y + ++ +G+ + DL
Sbjct: 48 EYEKGEYETAISTLNDAVEQGREM----RADYKVISKSFARIGNAYHKLG----DLKKTI 99
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
K + L + ++ + + + N + +E G Y
Sbjct: 100 EYYQKSLTEH---RTADILTKLRNAEKELKKAEAEAYV----NPEKAE--EARLEGKEYF 150
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
K A+K Y + + + A R N
Sbjct: 151 TKSD--------------------WPNAVKAYTE--MI--KRAPEDA--RGYSNRAAALA 184
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269
L +F +AI + ++ F A + I + EY +A E
Sbjct: 185 KLMSFPEAIADCNKAIEKDPNFVR------AYIRKATAQIAVKEYASALETLDAARTK 236
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258 | Back alignment and structure |
|---|
Score = 74.5 bits (184), Expect = 4e-15
Identities = 20/226 (8%), Positives = 53/226 (23%), Gaps = 49/226 (21%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ G+ + + I+ S + + L + +K ++ + + +
Sbjct: 82 FARIGNAYHKLGDLKKTIEYYQK-----SLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
+A+ + G + A+ ++ + + N
Sbjct: 137 E------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKR----APEDAR--GYSNRAAALA 184
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
EAI + A+ E + RA
Sbjct: 185 KLMS--------------------FPEAIADCNK--AI--EKDPNFV--RAYIRKATAQI 218
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257
+ + A+ E + +S ++ Q
Sbjct: 219 AVKEYASALETLDAARTKDAEVNN------GSSAREIDQLYYKASQ 258
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 4e-23
Identities = 36/324 (11%), Positives = 82/324 (25%), Gaps = 64/324 (19%)
Query: 45 FQAAIQAGTDDLRT---LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ + + A T D + G +F + A ++ + L
Sbjct: 225 YHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-------PN 277
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
S L TL E ++ ++++ + Y+ G +Y
Sbjct: 278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPP------TYYHRGQMYFILQD------ 325
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+ A + +++ A +N L Y G F ++
Sbjct: 326 --------------YKNAKEDFQK--AQ--SLNPENVY--PYIQLACLLYKQGKFTESEA 365
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD--------- 272
+ E + + G++ A + Y L +
Sbjct: 366 FFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419
Query: 273 -LGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
L +A S T + AI + + + A L
Sbjct: 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQ------AKIGLAQLKL 473
Query: 332 ARGNHEKALYFATKHLEISKQLGD 355
++A+ +++ + +
Sbjct: 474 QMEKIDEAIELFEDSAILARTMDE 497
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 2e-22
Identities = 41/272 (15%), Positives = 71/272 (26%), Gaps = 53/272 (19%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FFQ A+ + Y G YF L DY+ A + ++ +L
Sbjct: 296 FKFFQKAVDLNPEY----PPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VY 345
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
L L GK+ E+ L E + +G
Sbjct: 346 PYIQLACLLYKQGKFTESEAFFNETKLK----FPTLPE--VPTFFAEILTDRGD------ 393
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLAL----------MKEINDTAAQGRACGNLGNTYY 211
AIK Y+ L + + A + T
Sbjct: 394 --------------FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQL 439
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271
F AI + ++ A L + + + A E ++ + +LA+
Sbjct: 440 DEEKFNAAIKLLTKACELDPRSEQ------AKIGLAQLKLQMEKIDEAIELFEDSAILAR 493
Query: 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
+ + ++A LR P
Sbjct: 494 TMDE-KLQATTFAEAAKIQKRLRADPIISAKM 524
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 87.5 bits (217), Expect = 2e-18
Identities = 43/324 (13%), Positives = 90/324 (27%), Gaps = 29/324 (8%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G G + + GN +F ++ +A++Y++ + L N
Sbjct: 1 GSHMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPN--- 57
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
E N+ G ++ + + LEI S+ AL + + G
Sbjct: 58 ---EPVFYSNISACYISTGDLEKVIEFTTKALEI----KPDHSK--ALLRRASANESLGN 108
Query: 156 ---AIG--KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY 210
A+ V + ++ L+ + + D + + +
Sbjct: 109 FTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLA 168
Query: 211 YLLGNFKQAI----YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266
G F + A A +R ++ + +++ Y
Sbjct: 169 SFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSL 228
Query: 267 L-VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS 325
L D R A A G + L + A + L +
Sbjct: 229 LSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQE----SINLHPTP---NSYIF 281
Query: 326 LGNAHAARGNHEKALYFATKHLEI 349
L A + N ++ F K +++
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDL 305
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 85.2 bits (211), Expect = 2e-17
Identities = 31/233 (13%), Positives = 63/233 (27%), Gaps = 27/233 (11%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
FQ A ++ Y QL + G + ++ + + +
Sbjct: 330 KEDFQKAQSLNPEN----VYPYIQLACLLYKQGKFTESEAFFNETKLKFPT------LPE 379
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
L G +D A+ + + + +G + +
Sbjct: 380 VPTFFAEILTDRGDFDTAIKQYDIAKRL----EEVQEK--IHVGIGPLIGKATILARQSS 433
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
Q E+ AIK + A E++ + Q A L + +AI
Sbjct: 434 QDPTQLDEEK----FNAAIKLLTK--AC--ELDPRSEQ--AKIGLAQLKLQMEKIDEAIE 483
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274
++ +AR + + + L S + TL + G
Sbjct: 484 LFEDSAILARTMDE-KLQATTFAEAAKIQKRLRADPIISAKMELTLARYRAKG 535
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 81.3 bits (201), Expect = 3e-16
Identities = 43/353 (12%), Positives = 86/353 (24%), Gaps = 69/353 (19%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQ------------DLTL 89
+ F A++ D S + +A LG++ AM + L
Sbjct: 79 IEFTTKALEIKPDH----SKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPML 134
Query: 90 ARNMEDKLGE------AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
RN+ + + +K G L HLE+S + A
Sbjct: 135 ERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYD-TAY 193
Query: 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203
L + A + + + + L + A
Sbjct: 194 ALLSDALQRLYSATDEGYLVANDLLTKSTD-MYHSLLSANTVDDPLRENAAL------AL 246
Query: 204 GNLGNTYYLLGNFKQAI----------------------YYHQERLKIAREFGDKAAERR 241
G ++L N A +E + +F KA +
Sbjct: 247 CYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN 306
Query: 242 ANS-----NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
+ G + L +Y+ A E +++ L + L +
Sbjct: 307 PEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPEN------VYPYIQLACLLYKQGKF 360
Query: 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + L + RG+ + A+ +
Sbjct: 361 TESEAFFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRL 407
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 1e-04
Identities = 15/93 (16%), Positives = 28/93 (30%), Gaps = 21/93 (22%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
L + +A++ + LAR M++KL T K + +
Sbjct: 465 KIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--------QATTFAEAAKIQKRL-- 514
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
+ + +S + Y AKG
Sbjct: 515 ---------RADPIISA--KMELTLARYRAKGM 536
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 94.1 bits (235), Expect = 2e-22
Identities = 34/209 (16%), Positives = 56/209 (26%), Gaps = 44/209 (21%)
Query: 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120
Y G ++ G Y +A+ +Q + +LG G D
Sbjct: 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGT 62
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
+R L + LG Y K A+
Sbjct: 63 ELLERSLAD----APDNVK--VATVLGLTYVQVQK--------------------YDLAV 96
Query: 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240
+ E N LG LG F +AI + L + G
Sbjct: 97 PLLIK--VA--EANPINFN--VRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGK----- 145
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVL 269
+ + S+ +G ++ A H+K+ L
Sbjct: 146 -VHRAIAFSYEQMGRHEEALPHFKKANEL 173
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 92.5 bits (231), Expect = 7e-22
Identities = 25/198 (12%), Positives = 61/198 (30%), Gaps = 44/198 (22%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ G + G+Y +A++ ++ + + + +LG Y G
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYDA----DAFDVD--VALHLGIAYVKTGA--------- 57
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+ + E+ +L + LG TY + + A+
Sbjct: 58 -----------VDRGTELLER--SL--ADAPDNVK--VATVLGLTYVQVQKYDLAVPLLI 100
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+ + + LG + LG + A + +K L L + +
Sbjct: 101 KVAEANPINFN------VRFRLGVALDNLGRFDEAIDSFKIALGLRPNE------GKVHR 148
Query: 285 SLGNTYTLLRDYPTAIDY 302
++ +Y + + A+ +
Sbjct: 149 AIAFSYEQMGRHEEALPH 166
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 57.5 bits (140), Expect = 9e-10
Identities = 25/145 (17%), Positives = 51/145 (35%), Gaps = 18/145 (12%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+ G ++ G + QA+ ++ D +LG +++ G +E +
Sbjct: 13 DKGISHAKAGRYSQAVMLLEQVYDADAFDVD------VALHLGIAYVKTGAVDRGTELLE 66
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
R+L A D + LG TY ++ Y A+ ++ + +
Sbjct: 67 RSLADAPDN------VKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFN------VRF 114
Query: 325 SLGNAHAARGNHEKALYFATKHLEI 349
LG A G ++A+ L +
Sbjct: 115 RLGVALDNLGRFDEAIDSFKIALGL 139
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 47.8 bits (115), Expect = 2e-06
Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 15/88 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LG A LG + +A+ K L L + E K + + + MG+++EA+
Sbjct: 113 RFRLGVALDNLGRFDEAIDSFKIALGL------RPNEGKVHRAIAFSYEQMGRHEEALPH 166
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVY 150
K+ E+ ++ S L V
Sbjct: 167 FKKANEL----DEGASV-----ELALVP 185
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186 | Back alignment and structure |
|---|
Score = 42.8 bits (102), Expect = 8e-05
Identities = 15/97 (15%), Positives = 24/97 (24%), Gaps = 12/97 (12%)
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
+ G SH G Y A ++ LG Y +
Sbjct: 12 RDKGISHAKAGRYSQAVMLLEQVYDADAFD------VDVALHLGIAYVKTGAVDRGTELL 65
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
R L A + LG + ++ A+
Sbjct: 66 ERSLADAPDNVK------VATVLGLTYVQVQKYDLAV 96
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 98.9 bits (246), Expect = 4e-22
Identities = 45/334 (13%), Positives = 98/334 (29%), Gaps = 45/334 (13%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
LA+ RL + + + AI+ D+ + +L + + + +
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVE 237
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144
+ L A + + + D+A+ K+ LE
Sbjct: 238 EALEKAPG------VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY------LHC 285
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
+G Y AK + + + ++ + A+ + ++ E ND R C
Sbjct: 286 QIGCCYRAKVFQVMNLRENGMYGK-RKLLELIGHAVAHLKKAD----EANDNLF--RVCS 338
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHY 263
L + + L +++A YY Q+ K + GN ++ + A H+
Sbjct: 339 ILASLHALADQYEEAEYYFQKEFSKELTPVAKQL---LHLRYGNFQLYQMKCEDKAIHHF 395
Query: 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRAC 323
+ + Q ++ L+ I +L + A
Sbjct: 396 IEGVKINQKSREK----------EKMKDKLQK------------IAKMRLSKNGADSEAL 433
Query: 324 WSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357
L ++A + + LE +
Sbjct: 434 HVLAFLQELNEKMQQADEDSERGLESGSLIPSAS 467
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 81.9 bits (202), Expect = 1e-16
Identities = 44/327 (13%), Positives = 90/327 (27%), Gaps = 53/327 (16%)
Query: 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS---GNLGNTLKVMGKYD 117
+ + L G + A++ ++ L + E +S GN MG+
Sbjct: 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLS 111
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
+ + + + + + + +G K G G E KVC +
Sbjct: 112 DVQIYVDKVKHVCEKFSSPYR-----IESPELDCEEGWTRLKCG----GNQNERAKVCFE 162
Query: 178 EAIK------YYEQNLAL----MKEINDTAAQGRACG-------NLGNTYYLLGNFKQAI 220
+A++ + LA+ + + + LL +
Sbjct: 163 KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKM 222
Query: 221 YYHQERLKIAREFGDKAAERR-----ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275
E + ++A E+ + + E A E K+ L +
Sbjct: 223 REEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN--- 279
Query: 276 RAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGE------------GRA 322
A +G Y + + + +L+ R
Sbjct: 280 ---NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFRV 336
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEI 349
C L + HA +E+A Y+ K
Sbjct: 337 CSILASLHALADQYEEAEYYFQKEFSK 363
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 77.7 bits (191), Expect = 3e-15
Identities = 39/259 (15%), Positives = 75/259 (28%), Gaps = 67/259 (25%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLT-----------LARNMEDKLGEAKSSGN--LGN 108
+ Y + KA++ K+ L + K+ + + +
Sbjct: 249 VLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYG 308
Query: 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEY 168
K++ A+ K+ E + R L +++ +
Sbjct: 309 KRKLLELIGHAVAHLKKADEA------NDNLFRVCSILASLHALADQ------------- 349
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT-YYLLGNFKQAIYYHQERL 227
+EA Y+++ KE+ A Q GN Y + +AI++ E +
Sbjct: 350 -------YEEAEYYFQK--EFSKELTPVAKQLLHL-RYGNFQLYQMKCEDKAIHHFIEGV 399
Query: 228 KIAREFGD---------KAAERR---------ANSNLGNSHIFLGEYQAASEHYKRTLVL 269
KI ++ + K A+ R A L + Q A E +R L
Sbjct: 400 KINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLES 459
Query: 270 AQDLGDRAVEAQACYSLGN 288
+ A G
Sbjct: 460 GSLIPS------ASSWNGE 472
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 72.7 bits (178), Expect = 1e-13
Identities = 39/287 (13%), Positives = 91/287 (31%), Gaps = 44/287 (15%)
Query: 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132
L + + ++ + + +++ +A L + G+ + A+ C ++ E+ +Q
Sbjct: 24 LMEGENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQ 83
Query: 133 LNDKLSEGRAL---YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
+ +E R+L N VY+ G+ L + Y ++ +
Sbjct: 84 EHADQAEIRSLVTWGNYAWVYYHMGR--------------------LSDVQIYVDKVKHV 123
Query: 190 MKEINDTA--AQGRACGNLGNTYYLLG--NFKQAIYYHQERLKIAREFGDKAAERRANSN 245
++ + G T G ++A ++ L+ + + S
Sbjct: 124 CEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE------FTSG 177
Query: 246 LGNSHIFL---GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
L + L Q A + ++ + L D L +R+
Sbjct: 178 LAIASYRLDNWPPSQNAIDPLRQAIRLNPDN------QYLKVLLALKLHKMREEGEEEGE 231
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + A + V + S + + +KA+ K LE
Sbjct: 232 GEKLVEEALEKAPGVTD--VLRSAAKFYRRKDEPDKAIELLKKALEY 276
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472 | Back alignment and structure |
|---|
Score = 52.2 bits (125), Expect = 3e-07
Identities = 30/234 (12%), Positives = 71/234 (30%), Gaps = 21/234 (8%)
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236
+ ++ +E + E + + C L +L G + A+ ++ ++ ++
Sbjct: 28 ENSLDDFEDKVFYRTEFQNREFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHAD 87
Query: 237 AAERR---ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYT 291
AE R N + +G + + + + R + G T
Sbjct: 88 QAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRL 147
Query: 292 LL--RDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGN---AHAARGNHEKALYFATK 345
A + L + + G A + L N + A +A+
Sbjct: 148 KCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPD 207
Query: 346 HLEISKQLGDPLGQVTAQMNVTD-----LRKALGMSTNDLSPDSLQLINSYANA 394
+ + L L ++ + + +AL + +P ++ S A
Sbjct: 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEAL-----EKAPGVTDVLRSAAKF 256
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-21
Identities = 45/287 (15%), Positives = 81/287 (28%), Gaps = 42/287 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
L +A + + + + + + G Y LG A Q L
Sbjct: 12 AVPLQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALA 71
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+ +M + LG L G +D A LE+ + + A N G
Sbjct: 72 IRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----DPTYNY--AHLNRGI 119
Query: 149 VYHAKGK---AI---GKVGQQDPGEYPE--------EVKVCLQEAIKYYEQNLALMKEIN 194
+ G+ A Q DP P E K+ ++A + +Q K
Sbjct: 120 ALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQ--HFEKSDK 176
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
+ LGN ++ + +A + N LG ++ LG
Sbjct: 177 EQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEHLSE------TNFYLGKYYLSLG 229
Query: 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
+ +A+ +K + +LL +
Sbjct: 230 DLDSATALFKLAVANNVH------NFVEHRYALLELSLLGQDQDDLA 270
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 85.8 bits (213), Expect = 8e-19
Identities = 38/278 (13%), Positives = 69/278 (24%), Gaps = 50/278 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
L + + +Q L +D+ + G +G A
Sbjct: 8 SEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQLLY--ERGVLYDSLGLRALARND 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ L I + E LG G A +
Sbjct: 66 FSQALAI----RPDMPE--VFNYLGIYLTQAGN--------------------FDAAYEA 99
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
++ L E++ T A N G Y G K A +
Sbjct: 100 FDS--VL--ELDPTYNY--AHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPF------R 147
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+ L + L E QA + + ++ + LGN
Sbjct: 148 SLWLYLAEQKLDEKQAKEVLKQH---FEKSDKEQWGWNIVEFYLGNISEQTL-MERLKAD 203
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ +A+ L + + LG + + G+ + A
Sbjct: 204 ATDNTSLAEHLSE------TNFYLGKYYLSLGDLDSAT 235
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275 | Back alignment and structure |
|---|
Score = 77.0 bits (190), Expect = 9e-16
Identities = 38/257 (14%), Positives = 69/257 (26%), Gaps = 56/257 (21%)
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
+ S L L+ + + + ++ L +D+ ++ LY G +Y + G
Sbjct: 4 SWRKSEVLAVPLQPTLQQEVILARMEQILASRALTDDERAQ--LLYERGVLYDSLGL--- 58
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218
A + Q AL I + LG GNF
Sbjct: 59 -----------------RALARNDFSQ--AL--AIRPDMPE--VFNYLGIYLTQAGNFDA 95
Query: 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278
A L++ + A+ N G + + G + A + +
Sbjct: 96 AYEAFDSVLELDPTYNY------AHLNRGIALYYGGRDKLAQDDLLAFYQDDPND----- 144
Query: 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN--- 335
L L D A + +H + + W GN
Sbjct: 145 -PFRSLWLYLAEQKL-DEKQAKEVLKQHFEKSDKE---------QWGWNIVEFYLGNISE 193
Query: 336 ---HEKALYFATKHLEI 349
E+ AT + +
Sbjct: 194 QTLMERLKADATDNTSL 210
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 2e-21
Identities = 39/245 (15%), Positives = 78/245 (31%), Gaps = 56/245 (22%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTL----------ARNMEDKLGEAKSSGNLGNTLKV 112
Q +A G +A+ Y +Q + L ++ +K + L K
Sbjct: 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKK 66
Query: 113 MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172
YD+A + K L+ + D L + +G+
Sbjct: 67 NRNYDKAYLFYKELLQKAPNNVD------CLEACAEMQVCRGQ----------------- 103
Query: 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN-FKQAIYYHQERLKIAR 231
++A++ YE+ L ++ A LGN YYL K+ + ++L
Sbjct: 104 ---EKDALRMYEKIL----QLEADNLA--ANIFLGNYYYLTAEQEKKKLETDYKKLSSPT 154
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291
+ A G S +F Y+ A ++ ++ +A +L
Sbjct: 155 KMQY------ARYRDGLSKLFTTRYEKARNSLQKVILRFPS-------TEAQKTLDKILR 201
Query: 292 LLRDY 296
+ ++
Sbjct: 202 IEKEV 206
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 77.9 bits (192), Expect = 2e-16
Identities = 26/209 (12%), Positives = 55/209 (26%), Gaps = 49/209 (23%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEI----------SRQLNDKLSEGRALYNLGNVYHAKG 154
+ G+ +A+ ++ + + + + + L Y
Sbjct: 9 QKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNR 68
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+A +Y++ L K N+ G
Sbjct: 69 N--------------------YDKAYLFYKE--LLQKAPNNVDCLE----ACAEMQVCRG 102
Query: 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDL 273
K A+ +++ L++ + AN LGN + E + E + L +
Sbjct: 103 QEKDALRMYEKILQLEADNLA------ANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM 156
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
A Y G + Y A +
Sbjct: 157 ------QYARYRDGLSKLFTTRYEKARNS 179
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 77.5 bits (191), Expect = 2e-16
Identities = 37/246 (15%), Positives = 71/246 (28%), Gaps = 56/246 (22%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDD------------LRTLSAIYSQLGNAYF 71
E+ + +AG V++F+ I D S + ++L AY
Sbjct: 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYK 65
Query: 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
+Y KA ++K+ L A N D L G+ +A+ ++ L++
Sbjct: 66 KNRNYDKAYLFYKELLQKAPNNVDCLE------ACAEMQVCRGQEKDALRMYEKILQLEA 119
Query: 132 QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
A LGN Y+ + ++ ++ + L
Sbjct: 120 DNLA------ANIFLGNYYYLTAEQE-------------------KKKLETDYKKL---- 150
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
R G + +++A Q+ + + E A L
Sbjct: 151 SSPTKMQYARY--RDGLSKLFTTRYEKARNSLQKVILR-----FPSTE--AQKTLDKILR 201
Query: 252 FLGEYQ 257
E
Sbjct: 202 IEKEVN 207
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208 | Back alignment and structure |
|---|
Score = 72.9 bits (179), Expect = 7e-15
Identities = 32/219 (14%), Positives = 62/219 (28%), Gaps = 49/219 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL----------MK 191
+ + G+ +A+ Y+ Q +AL
Sbjct: 6 EMLQKVSAAIEAGQ--------------------NGQAVSYFRQTIALNIDRTEMYYWTN 45
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
++ + L Y N+ +A +++E L+ A D +
Sbjct: 46 VDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNVD------CLEACAEMQV 99
Query: 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIA 310
G+ + A Y++ L L D A LGN Y ++ + L
Sbjct: 100 CRGQEKDALRMYEKILQLEADN------LAANIFLGNYYYLTAEQEKKKLETDYKKLSSP 153
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
++ A + G + +EKA K +
Sbjct: 154 TKMQY------ARYRDGLSKLFTTRYEKARNSLQKVILR 186
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 92.3 bits (230), Expect = 2e-21
Identities = 41/253 (16%), Positives = 70/253 (27%), Gaps = 54/253 (21%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
I +QL Y DY++A + L + + + D+A
Sbjct: 10 IKTQLAMEYMRGQDYRQATASIEDALKSDPKN------ELAWLVRAEIYQYLKVNDKAQE 63
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
++ L I N G E++
Sbjct: 64 SFRQALSIKPDS------AEINNNYGWFL-----------CGRLNRP--------AESMA 98
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
Y+++ AL T A N G G F A Y + L +F
Sbjct: 99 YFDK--ALADPTYPTPYI--ANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP------ 148
Query: 242 ANSNLGNSHIFLGEYQAASEHYKR-----------TLVLAQDLGDRAVEAQACYSLGNTY 290
A L + + G+ A ++K+ L+L + AQA Y
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA-- 206
Query: 291 TLLRDYPTAIDYH 303
L ++P + +
Sbjct: 207 QLQANFPYSEELQ 219
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 60.7 bits (148), Expect = 1e-10
Identities = 30/213 (14%), Positives = 49/213 (23%), Gaps = 43/213 (20%)
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
L Y ++A E AL + +
Sbjct: 9 NIKTQLAMEYMRGQD--------------------YRQATASIED--AL--KSDPKNEL- 43
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAA 259
A Y L +A ++ L I + + N+N G L +
Sbjct: 44 -AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE------INNNYGWFLCGRLNRPAES 96
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
++ + L A + G + A Y R L Q
Sbjct: 97 MAYFDKAL----ADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPP---- 148
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
A L G A Y+ K+ +
Sbjct: 149 --AFKELARTKMLAGQLGDADYYFKKYQSRVEV 179
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225 | Back alignment and structure |
|---|
Score = 43.4 bits (103), Expect = 8e-05
Identities = 20/116 (17%), Positives = 34/116 (29%), Gaps = 13/116 (11%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+A+F A+ T ++ G G + A Y K+ L
Sbjct: 97 MAYFDKALADPTYPTPYIA--NLNKGICSAKQGQFGLAEAYLKRSLAAQPQF------PP 148
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
+ L T + G+ +A K++ L L + A G A
Sbjct: 149 AFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA-----DDLLLGWKIAKALGNAQ 199
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 94.0 bits (234), Expect = 6e-21
Identities = 51/332 (15%), Positives = 98/332 (29%), Gaps = 73/332 (21%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G GD + + + + ++ D A++ LG T A+V
Sbjct: 68 AFEEGLKRLKEGDLPVTILFMEA--AILQDPGD----AEAWQFLGITQAENENEQAAIVA 121
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+R LE+ AL L Y Q+A +
Sbjct: 122 LQRCLELQPNNLK------ALMALAVSYTNTSH--------------------QQDACEA 155
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
+ + + N N + L ++ L+ +E +AA +
Sbjct: 156 LKN--WI--KQNPKYKY--LVKNKKGSPGLTRRMSKSP-VDSSVLEGVKELYLEAAHQNG 208
Query: 243 N-------SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
+ + LG GE+ A + + L + + LG T
Sbjct: 209 DMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDR 262
Query: 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL--------------- 340
A++ + R L I + R+ ++LG + G + +A+
Sbjct: 263 SEEAVEAYTRALEIQPGFI------RSRYNLGISCINLGAYREAVSNFLTALSLQRKSRN 316
Query: 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372
H IS + L + M+ +L +A
Sbjct: 317 QQQVPHPAISGNIWAALRIALSLMDQPELFQA 348
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 46/273 (16%), Positives = 84/273 (30%), Gaps = 49/273 (17%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + + +A + Q ++ ++L+ L A L +Y Q A + K +
Sbjct: 106 GITQAENENEQAAIVALQRCLELQPNNLKALMA----LAVSYTNTSHQQDACEALKNWIK 161
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR------QLNDKLSEGRA 142
K N + + + ++ V + N + +
Sbjct: 162 Q----NPKYKYLVK--NKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDL 215
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
LG ++H G+ AI + AL +
Sbjct: 216 QTGLGVLFHLSGE--------------------FNRAIDAFNA--AL--TVRPEDYS--L 249
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
LG T ++A+ + L+I F R+ NLG S I LG Y+ A +
Sbjct: 250 WNRLGATLANGDRSEEAVEAYTRALEIQPGFI------RSRYNLGISCINLGAYREAVSN 303
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
+ L L + + + GN + LR
Sbjct: 304 FLTALSLQRKSRN-QQQVPHPAISGNIWAALRI 335
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 66.2 bits (162), Expect = 8e-12
Identities = 36/225 (16%), Positives = 65/225 (28%), Gaps = 39/225 (17%)
Query: 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQK 78
+ + + A D + + + LG + G++ +
Sbjct: 174 KGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID--PDLQTGLGVLFHLSGEFNR 231
Query: 79 AMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138
A+ LT+ + LG TL + +EA+ R LEI +
Sbjct: 232 AIDAFNAALTVRPE------DYSLWNRLGATLANGDRSEEAVEAYTRALEI------QPG 279
Query: 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198
R+ YNLG G +EA+ + AL + +
Sbjct: 280 FIRSRYNLGISCINLGA--------------------YREAVSNFLT--AL--SLQRKSR 315
Query: 199 QGRACGNLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRA 242
+ + + + + A+ Q L A GD RA
Sbjct: 316 NQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDLDVLLRA 360
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 24/238 (10%), Positives = 56/238 (23%), Gaps = 46/238 (19%)
Query: 114 GKYDEAMVCCKRHLEISRQLNDKLSE--GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
+++ A + E ++ + E R + +
Sbjct: 3 MEFERAKAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVT---------------- 46
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
+ + K Y + G G+ I + + +
Sbjct: 47 ----VSASEKGYY------FHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQDP 96
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291
+ A LG + QAA +R L L + +A +L +YT
Sbjct: 97 GDAE------AWQFLGITQAENENEQAAIVALQRCLELQPNN------LKALMALAVSYT 144
Query: 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
A + + + + + K+ ++ +
Sbjct: 145 NTSHQQDACEALKNWIKQNPKYKY------LVKNKKGSPGLTRRMSKSPVDSSVLEGV 196
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 6e-21
Identities = 55/330 (16%), Positives = 95/330 (28%), Gaps = 48/330 (14%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
EG R + GD V F+AA+Q + LG A+ ++ L
Sbjct: 70 EGLRRLQEGDLPNAVLLFEAAVQQDPKH----MEAWQYLGTTQAENEQELLAISALRRCL 125
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS---RQLNDKLSEGRALY 144
L + + L L + +A + L + L EG
Sbjct: 126 ELKPDNQTALM------ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGA 179
Query: 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204
LG G + E + + + L D Q
Sbjct: 180 GLGPSKRILGSLLSDSL--------------FLEVKELFLAAVRLDPTSIDPDVQC---- 221
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
LG + L G + +A+ L + + LG + + + A Y+
Sbjct: 222 GLGVLFNLSGEYDKAVDCFTAALSVRPNDYL------LWNKLGATLANGNQSEEAVAAYR 275
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII----AQQLMDRVGEG 320
R L L ++ Y+LG + L + A+++ L L + +
Sbjct: 276 RALELQPGY------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMS 329
Query: 321 RACWS-LGNAHAARGNHEKALYFATKHLEI 349
WS L A + G + + L
Sbjct: 330 ENIWSTLRLALSMLGQSDAYGAADARDLST 359
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 90.9 bits (226), Expect = 6e-20
Identities = 46/312 (14%), Positives = 87/312 (27%), Gaps = 59/312 (18%)
Query: 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98
A + Q ++ + G GD A+ + + ++ +
Sbjct: 43 DLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEA--AVQQDPKH--- 97
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
++ LG T + A+ +R LE+ AL L + +
Sbjct: 98 -MEAWQYLGTTQAENEQELLAISALRRCLELKPDNQT------ALMALAVSFTNESL--- 147
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL---MKEINDTAAQGRACGNLGNTYYLLGN 215
++A + L + A +G LG + +LG+
Sbjct: 148 -----------------QRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGS 190
Query: 216 FKQAIYYHQERLKIAREFGDKAAERRAN-------SNLGNSHIFLGEYQAASEHYKRTLV 268
+E A LG GEY A + + L
Sbjct: 191 LLS-----DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALS 245
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ + LG T A+ + R L + + G R+ ++LG
Sbjct: 246 VRPND------YLLWNKLGATLANGNQSEEAVAAYRRALEL------QPGYIRSRYNLGI 293
Query: 329 AHAARGNHEKAL 340
+ G H +A+
Sbjct: 294 SCINLGAHREAV 305
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 75.5 bits (186), Expect = 8e-15
Identities = 39/275 (14%), Positives = 76/275 (27%), Gaps = 48/275 (17%)
Query: 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134
++++A + D+ ++ +L E + YD+ +
Sbjct: 2 EFERAKSAIESDVDFWDKLQAELEEMAK--RDAEAHPWLSDYDDLTSATYD-KGYQFEEE 58
Query: 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194
+ L + + G +G L A+ +E A+ ++
Sbjct: 59 NPLRDHPQPFEEGLRRLQEGD--------------------LPNAVLLFEA--AVQQDPK 96
Query: 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
A LG T AI + L++ + A L S
Sbjct: 97 HM----EAWQYLGTTQAENEQELLAISALRRCLELKPDNQT------ALMALAVSFTNES 146
Query: 255 EYQAASEHYKRTLVLA---QDLGDRAVEAQACYSLGNTYTLL------RDYPTAIDYHLR 305
+ A E + L L A E LG + +L + + L
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206
Query: 306 HLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
+ + +D LG G ++KA+
Sbjct: 207 AVRLDPTSID----PDVQCGLGVLFNLSGEYDKAV 237
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 6e-13
Identities = 33/179 (18%), Positives = 57/179 (31%), Gaps = 38/179 (21%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ LG + G+Y KA+ L++ N + LG TL + +EA+
Sbjct: 219 VQCGLGVLFNLSGEYDKAVDCFTAALSVRPN------DYLLWNKLGATLANGNQSEEAVA 272
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
+R LE+ + R+ YNLG G +EA++
Sbjct: 273 AYRRALEL------QPGYIRSRYNLGISCINLGA--------------------HREAVE 306
Query: 182 YYEQNLALMKE-----INDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR-EFG 234
++ + L + ++ A L +LG L FG
Sbjct: 307 HFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDLSTLLTMFG 365
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 8e-21
Identities = 34/287 (11%), Positives = 77/287 (26%), Gaps = 59/287 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G + L + +A + E ++ +LG T K A++
Sbjct: 24 PMEEGLSMLKLANLAEAALAFEA--VCQAAPER----EEAWRSLGLTQAENEKDGLAIIA 77
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + K L + + A+
Sbjct: 78 LNHARML----DPKDIA--VHAALAVSHTNEHN--------------------ANAALAS 111
Query: 183 YEQNLAL---------MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233
L + D + + +++ L++
Sbjct: 112 LRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
+++LG + Y +A+ + +R + L D AQ LG T
Sbjct: 172 AQ------LHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANG 219
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
A+D + R L I + R +++ +++ ++ A
Sbjct: 220 NRPQEALDAYNRALDINPGYV------RVMYNMAVSYSNMSQYDLAA 260
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 87.7 bits (218), Expect = 4e-19
Identities = 33/294 (11%), Positives = 75/294 (25%), Gaps = 57/294 (19%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G + + A D+ A+++ L ++ + A+ + L
Sbjct: 62 GLTQAENEKDGLAIIALNHARMLDPKDI----AVHAALAVSHTNEHNANAALASLRAWLL 117
Query: 89 L---------ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
D + + + +Y E LE++
Sbjct: 118 SQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPNDAQ---- 173
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199
+LG +Y+ A + A+ E+ AQ
Sbjct: 174 --LHASLGVLYNLSNN--------------------YDSAAANLRR--AV--ELRPDDAQ 207
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
LG T ++A+ + L I + R N+ S+ + +Y A
Sbjct: 208 --LWNKLGATLANGNRPQEALDAYNRALDINPGYV------RVMYNMAVSYSNMSQYDLA 259
Query: 260 SEHYKRTLVL------AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
++ R + + R ++ + +++
Sbjct: 260 AKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV 313
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 68.5 bits (168), Expect = 1e-12
Identities = 36/231 (15%), Positives = 71/231 (30%), Gaps = 43/231 (18%)
Query: 11 SQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70
S + AD L + E + R AA++ +D + +++ LG Y
Sbjct: 127 SVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND----AQLHASLGVLY 182
Query: 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130
+Y A ++ + L + +A+ LG TL + EA+ R L+I
Sbjct: 183 NLSNNYDSAAANLRRAVELRPD------DAQLWNKLGATLANGNRPQEALDAYNRALDI- 235
Query: 131 RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
R +YN+ Y + A K + + +
Sbjct: 236 -----NPGYVRVMYNMAVSYSNMSQ--------------------YDLAAKQLVRAIYMQ 270
Query: 191 KE-----INDTAAQGRAC-GNLGNTYYLLGNFKQAIYYHQERLKI-AREFG 234
+ R+ ++ + + ++ A+EFG
Sbjct: 271 VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEPFAKEFG 321
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 1e-10
Identities = 27/222 (12%), Positives = 48/222 (21%), Gaps = 47/222 (21%)
Query: 128 EISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187
+ + N+ G L EA +E
Sbjct: 9 DYPFEANNPYMYHENPMEEGLSMLKLAN--------------------LAEAALAFEA-- 46
Query: 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247
+ + A +LG T AI + + ++ L
Sbjct: 47 VC--QAAPEREE--AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------VHAALA 96
Query: 248 NSHIFLGEYQAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYTLLRDYPT 298
SH AA + L+ D ++ S + +Y
Sbjct: 97 VSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRE 156
Query: 299 AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340
L + SLG + N++ A
Sbjct: 157 CRTLLHAALEMNPNDAQ------LHASLGVLYNLSNNYDSAA 192
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 9e-21
Identities = 42/387 (10%), Positives = 107/387 (27%), Gaps = 85/387 (21%)
Query: 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY--------LGDYQKAMQYHKQ 85
A + + +A + + LS +Y + +Y +++ + + +
Sbjct: 169 GIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNE 228
Query: 86 DLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN 145
D L + L + G + A K+ +E+ ++N +
Sbjct: 229 DEKLKEKLAISLE------HTGIFKFLKNDPLGAHEDIKKAIELFPRVN-------SYIY 275
Query: 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGN 205
+ + + E Y+++ AL +++ + +
Sbjct: 276 MALIMADRND--------------------STEYYNYFDK--AL--KLDSNNSS--VYYH 309
Query: 206 LGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265
G ++L N+ QA + ++ E L ++ +
Sbjct: 310 RGQMNFILQNYDQAGKDFDKAKELDPENIF------PYIQLACLAYRENKFDDCETLFSE 363
Query: 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD---RVGEGRA 322
+ + T D+ A+ + + + +L +
Sbjct: 364 AKRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVG 417
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDP--------LGQVTAQMN-----VTDL 369
+L + N +A K ++ DP L Q+ Q +T
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKL-----DPRSEQAKIGLAQMKLQQEDIDEAITLF 472
Query: 370 RKALGMSTNDLSPDSLQLINSYANANQ 396
++ DL+ + + + A
Sbjct: 473 EESA-----DLARTMEEKLQAITFAEA 494
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 89.8 bits (223), Expect = 4e-19
Identities = 33/275 (12%), Positives = 73/275 (26%), Gaps = 58/275 (21%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
+ D +F A++ +++ S++Y G F L +Y +A + + L
Sbjct: 280 MADRNDSTEYYNYFDKALKLDSNN----SSVYYHRGQMNFILQNYDQAGKDFDKAKELDP 335
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
L K+D+ + E +
Sbjct: 336 E------NIFPYIQLACLAYRENKFDDCETLFSEAKRK----FPEAPE--VPNFFAEILT 383
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY- 210
K +A+K Y+ A+ E+ + +
Sbjct: 384 DKND--------------------FDKALKQYDL--AI--ELENKLD--GIYVGIAPLVG 417
Query: 211 --------YLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ NF +A ++ K+ A L + + A
Sbjct: 418 KATLLTRNPTVENFIEATNLLEKASKLDPRSEQ------AKIGLAQMKLQQEDIDEAITL 471
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297
++ + LA+ + + ++A +R P
Sbjct: 472 FEESADLARTMEE-KLQAITFAEAAKVQQRIRSDP 505
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 80.9 bits (200), Expect = 3e-16
Identities = 34/342 (9%), Positives = 82/342 (23%), Gaps = 71/342 (20%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +A LG + AM L+ N + + + M K E
Sbjct: 76 LLRRASANEGLGKFADAMFDLSV---LSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132
Query: 123 CKRHLEISRQLNDKLSEGR-------ALYNLGNVYHAKG--------------------K 155
+L+ + ++ R +
Sbjct: 133 IDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFANYDESNEADKELMN 192
Query: 156 AIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL-ALMKEINDTAAQGRACGNLGNTYYLLG 214
+ + ++ P Y + + +A + +E+ L ++ + + G +L
Sbjct: 193 GLSNLYKRSPESYDKADE-SFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKN 251
Query: 215 NFKQAI----------------------YYHQERLKIAREFGDKAAERRANS-----NLG 247
+ A + + DKA + +N+ + G
Sbjct: 252 DPLGAHEDIKKAIELFPRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311
Query: 248 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
+ L Y A + + + L + L +
Sbjct: 312 QMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFDDCETLFSEAK 365
Query: 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ + + + +KAL +E+
Sbjct: 366 RKFPEAPE------VPNFFAEILTDKNDFDKALKQYDLAIEL 401
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 7e-15
Identities = 51/365 (13%), Positives = 105/365 (28%), Gaps = 59/365 (16%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN +F Y A++Y+ L L + NL +G + +
Sbjct: 9 LKDKGNQFFRNKKYDDAIKYYNWALELKED-------PVFYSNLSACYVSVGDLKKVVEM 61
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK---AIG--KVGQQDPGEYPEEVKV--- 174
+ LE+ S+ L + GK A+ V + ++
Sbjct: 62 STKALEL----KPDYSK--VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLE 115
Query: 175 ---------CLQEAIKYYEQNLALMKEINDTAAQGR-------ACGNLGNTYYLLGNFKQ 218
L+E + A E++ A+ R +++ + +
Sbjct: 116 RNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPEL 175
Query: 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL-VLAQDLGDRA 277
+ E + +E + + + A+ ++ L +D +
Sbjct: 176 TFANYDESNEADKEL-MNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234
Query: 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHE 337
A + G L D A + + A +L RV + + A R +
Sbjct: 235 KLAISLEHTGIFKFLKNDPLGAHE----DIKKAIELFPRV---NSYIYMALIMADRNDST 287
Query: 338 KALYFATKHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMSTNDLSPDSLQLIN 389
+ + K L++ GQ+ + D KA +L P+++
Sbjct: 288 EYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAK-----ELDPENIFPYI 342
Query: 390 SYANA 394
A
Sbjct: 343 QLACL 347
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 1e-08
Identities = 31/220 (14%), Positives = 60/220 (27%), Gaps = 37/220 (16%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
AL + GN + K +AIKYY AL E+ +
Sbjct: 8 ALKDKGNQFFRNKK--------------------YDDAIKYYNW--AL--ELKEDPV--- 40
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
NL Y +G+ K+ + + L++ ++ +++ LG++ A
Sbjct: 41 FYSNLSACYVSVGDLKKVVEMSTKALELKPDYSK------VLLRRASANEGLGKFADAMF 94
Query: 262 HYKRTLVL----AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317
+ + ++ D TA +
Sbjct: 95 DLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154
Query: 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL 357
E + + E + E K+L + L
Sbjct: 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGL 194
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-04
Identities = 19/179 (10%), Positives = 35/179 (19%), Gaps = 54/179 (30%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQ------- 81
+ F A + + + + D+ KA++
Sbjct: 345 ACLAYRENKFDDCETLFSEAKRKFPEA----PEVPNFFAEILTDKNDFDKALKQYDLAIE 400
Query: 82 ---------------YHKQDLTLARNMEDKLGEAKSS---------------GNLGNTLK 111
K L + EA + L
Sbjct: 401 LENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKL 460
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170
DEA+ + +++R + A A QQ P
Sbjct: 461 QQEDIDEAITLFEESADLAR-------------TMEEKLQAITFAEAAKVQQRIRSDPV 506
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 93.9 bits (233), Expect = 2e-20
Identities = 54/369 (14%), Positives = 111/369 (30%), Gaps = 60/369 (16%)
Query: 62 IYSQLGNAYFYLGDY-QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120
G A DY +A + + L + + + LG G A
Sbjct: 104 ALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------AWNQLGEVYWKKGDVTSAH 157
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
C L + N +L NL V + +E + +++
Sbjct: 158 TCFSGALTHCK--NKV-----SLQNLSMVLRQLQT-----------DSGDEHSRHVMDSV 199
Query: 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYL--------LGNFKQAIYYHQERLKIARE 232
+ + + + ++ D GR+ LGN Y +QA+ + + K+ R+
Sbjct: 200 RQAKLAVQM--DVLD----GRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRK 253
Query: 233 FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292
+ N H + Y A E + + L +
Sbjct: 254 ASSNP---DLHLNRATLHKYEESYGEALEGFSQAAALDPAW------PEPQQREQQLLEF 304
Query: 293 LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
L + ++ + ++L +G SL AH + + + + + +
Sbjct: 305 LSRLTSLLESKGK--TKPKKLQSMLG------SLRPAHLGPCGDGRYQSASGQKMTLELK 356
Query: 353 LGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSM 412
L V + ++T + P + L++S + P V YN V+ +
Sbjct: 357 PLSTLQPGVNSGTVVLGKVVFSLTTEEKVPFTFGLVDS----DGPCYAVMVYNVVQSWGV 412
Query: 413 EQLDLIKLT 421
D + +
Sbjct: 413 LIGDSVAIP 421
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 1e-12
Identities = 31/312 (9%), Positives = 77/312 (24%), Gaps = 67/312 (21%)
Query: 65 QLGNAYFYLGDYQKAMQYHK---QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ + + +Q + L R+ + + +G ++ + ++ +
Sbjct: 32 RGSMMADEEEEAKHVLQKLQGLVDRLYCFRDSYFETHSVEDAGRKQQDVQ--EEMEKTLQ 89
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK-------AIGKVGQQDPGEYPE---- 170
+ L ++ AL G + + K + +P E E
Sbjct: 90 QMEEVLGSAQVEAQ------ALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQ 142
Query: 171 -----EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---------NF 216
K + A + AL N + Q NL L +
Sbjct: 143 LGEVYWKKGDVTSAHTCFSG--ALTHCKNKVSLQ-----NLSMVLRQLQTDSGDEHSRHV 195
Query: 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF--------LGEYQAASEHYKRTLV 268
++ + +++ G + LGN+++ Q A Y +
Sbjct: 196 MDSVRQAKLAVQMDVLDGR------SWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEK 249
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ + + + Y A++ + + +
Sbjct: 250 VDRKASS---NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPE------PQQREQQ 300
Query: 329 AHAARGNHEKAL 340
L
Sbjct: 301 LLEFLSRLTSLL 312
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 92.7 bits (230), Expect = 2e-20
Identities = 40/335 (11%), Positives = 87/335 (25%), Gaps = 29/335 (8%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQA-GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
AL + G+ + A++ + S LG G+ +++
Sbjct: 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 76
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE--GR 141
+Q +AR + S L G A ++ ++ + + +
Sbjct: 77 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 136
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ + A + L EA + ++
Sbjct: 137 LVRIRAQLLWAWAR--------------------LDEAEASARSGIEVLSSYQPQQQLQC 176
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--GEYQAA 259
L G+ A + G ++ +N+N + G+ AA
Sbjct: 177 LA-MLIQCSLARGDLDNARSQLNRLENLLGN-GKYHSDWISNANKVRVIYWQMTGDKAAA 234
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
+ + T + ++ LL ++ A A+ L
Sbjct: 235 ANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDL 292
Query: 320 GRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354
R L + G A L+++ + G
Sbjct: 293 NRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTG 327
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 90.0 bits (223), Expect = 1e-19
Identities = 36/302 (11%), Positives = 80/302 (26%), Gaps = 25/302 (8%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKR 125
G+ +A + K L ++ LG L G+ ++ ++
Sbjct: 20 RAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ 78
Query: 126 HLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185
+++RQ + +L + A+G LQ A + E+
Sbjct: 79 TEQMARQHDVWHYALWSLIQQSEILFAQGF--------------------LQTAWETQEK 118
Query: 186 NLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRAN 243
L+ E + +A + +++ + + +
Sbjct: 119 AFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLA 178
Query: 244 SNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYH 303
L + G+ A R L + + + Y + A
Sbjct: 179 -MLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 237
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363
LRH + + + ++ A G E A + E ++ L
Sbjct: 238 LRHTAKPEFANNHFLQ-GQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL 296
Query: 364 MN 365
+
Sbjct: 297 LL 298
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373 | Back alignment and structure |
|---|
Score = 75.0 bits (184), Expect = 1e-14
Identities = 22/193 (11%), Positives = 49/193 (25%), Gaps = 4/193 (2%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
EA + + L + ++ A LG + G +++ Q+ ++AR+
Sbjct: 30 PDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV 88
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA--CYSLGNTYTLL 293
+ G Q A E ++ L + +
Sbjct: 89 WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAW 148
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353
A + + + L ARG+ + A + +
Sbjct: 149 ARLDEAEASARSGIEVLSSYQPQQQLQCLAM-LIQCSLARGDLDNARSQLNRLENLLGNG 207
Query: 354 GDPLGQVTAQMNV 366
++ V
Sbjct: 208 KYHSDWISNANKV 220
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 92.9 bits (231), Expect = 4e-20
Identities = 42/348 (12%), Positives = 82/348 (23%), Gaps = 72/348 (20%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+ A + G L Q+ + Q L +
Sbjct: 194 LPVLCQAHGLTPQQ----VVAIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVV 243
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
+ + G + + + + ++ Q A+ + A
Sbjct: 244 AIASNGGGKQALETVQRLLPVLCQAHGLTPQQVV------AIASNSGGKQALET------ 291
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
+Q + Q L T Q A + G L ++ +
Sbjct: 292 --------------VQRLLPVLCQAHGL------TPQQVVAIASNGGGKQALETVQRLL- 330
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281
L A + A ++ L Q + L + +
Sbjct: 331 ---PVLCQAHGLTPQQVV--AIASHDGGKQALETVQRLLPVLCQAHGLTPE------QVV 379
Query: 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341
A S G L + + + + + A S A ++ L
Sbjct: 380 AIASNGGGKQALETVQRLLPVLCQAHGLTPEQVV------AIASHDGGKQALETVQRLLP 433
Query: 342 FATKHLEISKQ-------LGDP---LGQVTAQMNVTDLRKALGMSTND 379
+ ++ Q G L + AQ++ AL TND
Sbjct: 434 VLCQAHGLTPQQVVAIASNGGGRPALESIVAQLS--RPDPALAALTND 479
|
| >3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499 | Back alignment and structure |
|---|
Score = 75.6 bits (186), Expect = 1e-14
Identities = 35/300 (11%), Positives = 69/300 (23%), Gaps = 63/300 (21%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+ + + + + ++ Q A+ + A
Sbjct: 77 SHDGGKQALETVQRLLPVLCQAHGLTPQQVV------AIASHDGGKQALET--------- 121
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+Q + Q L T Q A + L + +
Sbjct: 122 -----------VQRLLPVLCQAHGL------TPEQVVAIASHDGGKQALETVQALLPVLC 164
Query: 225 ERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284
+ + E A ++ G L Q + L + A
Sbjct: 165 QAHGLTPEQVV------AIASNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIA 212
Query: 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344
S G L + + + Q + A S G A ++ L
Sbjct: 213 SNGGGKQALETVQRLLPVLCQAHGLTPQ------QVVAIASNGGGKQALETVQRLLPVLC 266
Query: 345 KHLEISKQLGDP---LGQVTAQMN-----VTDLRKALGMSTNDLSPDSLQLINSYANANQ 396
+ ++ Q + + L +A G L+P + I S Q
Sbjct: 267 QAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHG-----LTPQQVVAIASNGGGKQ 321
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 89.6 bits (223), Expect = 1e-19
Identities = 35/295 (11%), Positives = 78/295 (26%), Gaps = 45/295 (15%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ +LG G A+ + + + MGK A+
Sbjct: 6 HLELGKKLLAAGQLADALSQFHAAVDGDPD------NYIAYYRRATVFLAMGKSKAALPD 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ + L + A G++ +GK +E + ++ +K
Sbjct: 60 LTKVIA----LKMDFTA--ARLQRGHLLLKQGK-------------LDEAEDDFKKVLKS 100
Query: 183 YEQNLALMKEINDT--AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER 240
+ + A + + + + ++ AI + + L++ +
Sbjct: 101 NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAE----- 155
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300
I GE + A K L D +A Y + Y L D+ ++
Sbjct: 156 -LRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLGDHELSL 208
Query: 301 DYHLRHLII------AQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
L + +V + G + A ++
Sbjct: 209 SEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT 263
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 88.5 bits (220), Expect = 4e-19
Identities = 52/380 (13%), Positives = 119/380 (31%), Gaps = 54/380 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G++L AG ++ F AA+ D+ Y + + +G + A+ + +
Sbjct: 10 GKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIA 65
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L + A+ G+ L GK DEA K+ L+ + ++ L
Sbjct: 66 L----KMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE 119
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ + +A+ D AI + ++ L E+ A+ R
Sbjct: 120 MQRLRSQALDAFDGAD-----------YTAAITFLDK--IL--EVCVWDAELRE--LRAE 162
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ G ++AI + K+ + + A + + LG+++ + + L
Sbjct: 163 CFIKEGEPRKAISDLKAASKLKSDNTE------AFYKISTLYYQLGDHELSLSEVRECLK 216
Query: 269 LAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
L QD + + Y A + + + + R+
Sbjct: 217 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYT--VRS 274
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQMN-----VTDLRKALG 374
+ + + +A+ ++ L++ + L + + D A
Sbjct: 275 KERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQ- 333
Query: 375 MSTNDLSPDSLQLINSYANA 394
+ + + Q+ A
Sbjct: 334 ----EHNENDQQIREGLEKA 349
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 74.2 bits (183), Expect = 2e-14
Identities = 35/261 (13%), Positives = 72/261 (27%), Gaps = 53/261 (20%)
Query: 98 GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157
+ + LG L G+ +A+ ++ + A Y V+ A GK
Sbjct: 1 ADVEKHLELGKKLLAAGQLADALSQFHAAVD----GDPDNYI--AYYRRATVFLAMGK-- 52
Query: 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217
+ A+ + + + A G+ G
Sbjct: 53 ------------------SKAALPDLTK--VI--ALKMDFTA--ARLQRGHLLLKQGKLD 88
Query: 218 QAIYYHQERLKI---------AREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+A ++ LK A KA E + + +Y AA + L
Sbjct: 89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILE 148
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328
+ +A+ + + AI + + A + +
Sbjct: 149 VCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTE------AFYKIST 196
Query: 329 AHAARGNHEKALYFATKHLEI 349
+ G+HE +L + L++
Sbjct: 197 LYYQLGDHELSLSEVRECLKL 217
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 7e-08
Identities = 13/129 (10%), Positives = 36/129 (27%), Gaps = 12/129 (9%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
E L + G + +++ ++ ++ + + +A++ + L
Sbjct: 240 SAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVL 299
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147
+ E A + + YDEA+ + E + L
Sbjct: 300 QM----EPDNVNALK--DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ------IREGLE 347
Query: 148 NVYHAKGKA 156
++
Sbjct: 348 KAQRLLKQS 356
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 3e-19
Identities = 31/269 (11%), Positives = 70/269 (26%), Gaps = 26/269 (9%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
+EL E+ F + + + + + Q Y + A
Sbjct: 5 VELLKRAEKKGVPSS-----GFMKLFSGSDSYKFEEAADLCVQAATIYRLRKELNLAGDS 59
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142
+ + ++ + K G A+ + ++I
Sbjct: 60 FLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
+ LG + + D +Y +AI YE + A +
Sbjct: 120 KFELGEIL-----------ENDLHDY--------AKAIDCYELAGEWYAQDQSVALSNKC 160
Query: 203 CGNLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+ L G + +A Y + + + + G + + AA+
Sbjct: 161 FIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAAR 220
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+ + D + E+ SL +
Sbjct: 221 TLQEGQSEDPNFAD-SRESNFLKSLIDAV 248
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 69.3 bits (169), Expect = 4e-13
Identities = 24/183 (13%), Positives = 47/183 (25%), Gaps = 2/183 (1%)
Query: 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234
L A + + K+ + G + GN A+ + ++I G
Sbjct: 52 ELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG 111
Query: 235 DKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
LG L +Y A + Y+ A+ + + L
Sbjct: 112 QFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALD 171
Query: 294 RDYPTAIDYHLRHLIIA-QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ 352
Y A D + + + + + + G A + A +
Sbjct: 172 GQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPN 231
Query: 353 LGD 355
D
Sbjct: 232 FAD 234
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 Length = 292 | Back alignment and structure |
|---|
Score = 48.1 bits (114), Expect = 4e-06
Identities = 17/141 (12%), Positives = 36/141 (25%), Gaps = 3/141 (2%)
Query: 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
++AA+ + E A + + + + G+ +
Sbjct: 34 EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH-AARGNHEKALYFATKHLEISKQL 353
+ A+D + I + LG ++ KA+ E Q
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 354 GDPLGQVTAQMNVTDLRKALG 374
+ DL+ G
Sbjct: 152 QSVALSNKCFIKCADLKALDG 172
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 82.8 bits (206), Expect = 4e-19
Identities = 55/168 (32%), Positives = 87/168 (51%), Gaps = 40/168 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+
Sbjct: 4 WYNLGNAYYKQGDYDEAIEYYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEY 57
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ LE+ + + +E A YNLGN Y+ +G EAI+Y
Sbjct: 58 YQKALEL----DPRSAE--AWYNLGNAYYKQGD--------------------YDEAIEY 91
Query: 183 YEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229
Y++ AL E++ +A A NLGN YY G++ +AI Y+Q+ L++
Sbjct: 92 YQK--AL--ELDPRSAE---AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 72.4 bits (179), Expect = 2e-15
Identities = 54/161 (33%), Positives = 80/161 (49%), Gaps = 38/161 (23%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A YNLGN Y+ +G EAI+YY++ AL E++ +A+
Sbjct: 3 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPRSAE-- 36
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIE 90
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+Y++ L L A+A Y+LGN Y DY AI+Y
Sbjct: 91 YYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEY 125
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136 | Back alignment and structure |
|---|
Score = 58.2 bits (142), Expect = 2e-10
Identities = 48/148 (32%), Positives = 81/148 (54%), Gaps = 18/148 (12%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------AWYNLGNAYYKQGDYDEAIE 56
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
+Y++ L L A+A Y+LGN Y DY AI+Y+ + L + + +
Sbjct: 57 YYQKALELDPRS------AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------ 104
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEI 349
A ++LGNA+ +G++++A+ + K LE+
Sbjct: 105 AWYNLGNAYYKQGDYDEAIEYYQKALEL 132
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 5e-19
Identities = 56/382 (14%), Positives = 121/382 (31%), Gaps = 54/382 (14%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G++L AG ++ F AA+ D+ Y + + +G + A+ DLT
Sbjct: 33 GKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALP----DLT 84
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
++ A+ G+ L GK DEA K+ L+ + N++ L
Sbjct: 85 KVIQLKMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDE 142
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
+ + +A+ G D AI + ++ L E+ A+ R
Sbjct: 143 MQRLRSQALNAFGSGD-----------YTAAIAFLDK--IL--EVCVWDAELRE--LRAE 185
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
+ G ++AI + K+ + + A + + LG+++ + + L
Sbjct: 186 CFIKEGEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLK 239
Query: 269 LAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
L QD + + Y A + + R+
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRS 297
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQMN-----VTDLRKALG 374
+ + + +A+ ++ L++ + L + + D A
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQ- 356
Query: 375 MSTNDLSPDSLQLINSYANANQ 396
+ + + Q+ A +
Sbjct: 357 ----EHNENDQQIREGLEKAQR 374
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 81.7 bits (202), Expect = 1e-16
Identities = 38/296 (12%), Positives = 82/296 (27%), Gaps = 70/296 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ G Y ++M + + LG L G+ +A+
Sbjct: 6 HHSSGVDLGTENLYFQSMA-----------------DVEKHLELGKKLLAAGQLADALSQ 48
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ + A Y V+ A GK + A+
Sbjct: 49 FHAAVD----GDPDNYI--AYYRRATVFLAMGK--------------------SKAALPD 82
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI---------AREF 233
+ + ++ R G+ G +A ++ LK A+
Sbjct: 83 LTK--VI--QLKMDFTAARL--QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
K+ E + + + G+Y AA + L + +A+ +
Sbjct: 137 LIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW------DAELRELRAECFIKE 190
Query: 294 RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
+ AI + + A + + + G+HE +L + L++
Sbjct: 191 GEPRKAISDLKAASKLKNDNTE------AFYKISTLYYQLGDHELSLSEVRECLKL 240
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 66.6 bits (163), Expect = 7e-12
Identities = 37/286 (12%), Positives = 84/286 (29%), Gaps = 47/286 (16%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV-----CLQEAIKYYEQNLALMKEINDT 196
++ G + + D ++ E K L +A+ + A+ + +
Sbjct: 5 HHHSSGVDLGTENLYFQSM--ADVEKHLELGKKLLAAGQLADALSQFHA--AV--DGDPD 58
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
A + +G K A+ + +++ +F A G+ + G+
Sbjct: 59 NYI--AYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT------AARLQRGHLLLKQGKL 110
Query: 257 QAASEHYKRTLVL---------AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
A + +K+ L AQ ++ E Q S DY AI + + L
Sbjct: 111 DEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKIL 170
Query: 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL---GQVTAQM 364
+ + G KA+ ++ + + Q+
Sbjct: 171 EVCVW------DAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQL 224
Query: 365 N-----VTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYN 405
++++R+ L L D + Y + + +
Sbjct: 225 GDHELSLSEVRECL-----KLDQDHKRCFAHYKQVKKLNKLIESAE 265
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 2e-08
Identities = 26/158 (16%), Positives = 45/158 (28%), Gaps = 34/158 (21%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ G Y A ++ + ++ + +K + + K EA+ C
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKE--RICHCFSKDEKPVEAIRVCS 319
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
L+ + AL + Y + EAI+ YE
Sbjct: 320 EVLQ----MEPDNVN--ALKDRAEAYLIEEM--------------------YDEAIQDYE 353
Query: 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222
A E N+ Q L LL ++ YY
Sbjct: 354 T--AQ--EHNENDQQ--IREGLEKAQRLLKQSQKRDYY 385
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 2e-07
Identities = 18/182 (9%), Positives = 53/182 (29%), Gaps = 27/182 (14%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
E L + G + +++ ++ ++ + + +A+ +
Sbjct: 263 SAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAI----RVC 318
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147
+ ME A + + YDEA+ + E + L
Sbjct: 319 SEVLQMEPDNVNALK--DRAEAYLIEEMYDEAIQDYETAQEHNENDQQ------IREGLE 370
Query: 148 NVYHAKGKAIGK-----VGQQDPGEYPEEVKVCLQEAIKYY----------EQNLALMKE 192
++ + +G + + E +K + A++++ ++ +
Sbjct: 371 KAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKKKAEKKFID 430
Query: 193 IN 194
I
Sbjct: 431 IA 432
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 82.0 bits (202), Expect = 2e-16
Identities = 39/377 (10%), Positives = 87/377 (23%), Gaps = 75/377 (19%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
+++A G + A A + + + L Q+ +
Sbjct: 159 VKIAKRGGVTAMEAVHASRNALTGAPLNLTPAQVVA----IASNNGGKQALETVQRLLPV 214
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142
Q L + + + + + + + + A
Sbjct: 215 LCQAHGLTPA------QVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVV------A 262
Query: 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
+ + A +Q + Q L T Q A
Sbjct: 263 IASNIGGKQALET--------------------VQRLLPVLCQAHGL------TPDQVVA 296
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ G L ++ + + + + A ++ L Q
Sbjct: 297 IASHGGGKQALETVQRLLPVLCQAHGLTPDQVV------AIASHDGGKQALETVQRLLPV 350
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
+ L D + A S G L + + + + A
Sbjct: 351 LCQAHGLTPD------QVVAIASNGGGKQALETVQRLLPVLCQAHGLTPD------QVVA 398
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSP 382
S G A ++ L + ++ QV A + ++AL
Sbjct: 399 IASNGGKQAL-ETVQRLLPVLCQAHGLTPD------QVVAIASHDGGKQALE-------- 443
Query: 383 DSLQLINSYANANQPSP 399
+L+ + +P
Sbjct: 444 TVQRLLPVLCQTHGLTP 460
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 73.1 bits (179), Expect = 2e-13
Identities = 33/316 (10%), Positives = 71/316 (22%), Gaps = 44/316 (13%)
Query: 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98
G +Q L + A G Q + L +
Sbjct: 368 NGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGKQALETVQRLLPVLCQAHGLTPD 427
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK--- 155
+ + + + + + + ++ A+ + A
Sbjct: 428 QVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVV------AIASHDGGKQALETVQQ 481
Query: 156 AIGKVGQQDPGEYPEEVKVC-----------LQEAIKYYEQNLALMKEINDTAAQGRACG 204
+ + Q + V + +Q + Q L T Q A
Sbjct: 482 LLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGL------TPDQVVAIA 535
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+ G L ++ + + + + A ++ G L Q
Sbjct: 536 SNGGGKQALETVQRLLPVLCQAHGLTPDQ------VVAIASNGGGKQALETVQRLLPVLC 589
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACW 324
+ L Q + A S L + ++ Q + A
Sbjct: 590 QAHGLTQV------QVVAIASNIGGKQALETVQRLLP------VLCQAHGLTPAQVVAIA 637
Query: 325 SLGNAHAARGNHEKAL 340
S A ++ L
Sbjct: 638 SHDGGKQALETVQRLL 653
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 3e-12
Identities = 34/337 (10%), Positives = 82/337 (24%), Gaps = 59/337 (17%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L Q+ + Q + + + + + +
Sbjct: 602 IASNIGGKQALETVQRLLPVLCQAH------GLTPAQVVAIASHDGGKQALETVQRLLPV 655
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
+ ++ A+ + G A +Q +
Sbjct: 656 LCQAHGLTPDQVV------AIASNGGGKQALET--------------------VQRLLPV 689
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Q L T Q A + L ++ + + + + A
Sbjct: 690 LCQAHGL------TQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVV------A 737
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
++ G L Q + L + A S L +
Sbjct: 738 IASNGGGKQALETVQRLLPVLCQAHGLTPA------QVVAIASNIGGKQALETVQRLLP- 790
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL-GQVT 361
++ Q + + A S A ++ L + +++ + +
Sbjct: 791 -----VLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASNIG 845
Query: 362 AQMNVTDLRKALGMSTND--LSPDSLQLINSYANANQ 396
+ + +++ L + D L+PD + I S Q
Sbjct: 846 GKQALETVQRLLPVLCQDHGLTPDQVVAIASNIGGKQ 882
|
| >3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 4e-07
Identities = 32/268 (11%), Positives = 67/268 (25%), Gaps = 41/268 (15%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L Q+ + Q L + + + + G + + +
Sbjct: 704 IASNNGGKQALETVQRLLPVLCQAHGLTPD------QVVAIASNGGGKQALETVQRLLPV 757
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ--QDPGEYPEEVKVCL---- 176
+ ++ + A+ + A + QD G +V
Sbjct: 758 LCQAHGLTPA------QVVAIASNIGGKQALETVQRLLPVLCQDHGLTLAQVVAIASNIG 811
Query: 177 -QEAIKYYEQNLA-LMKEINDTAAQGRACGNLGNTYYLLGNFKQAI-------------- 220
++A++ ++ L L + T Q A + L ++ +
Sbjct: 812 GKQALETVQRLLPVLCQAHGLTQDQVVAIASNIGGKQALETVQRLLPVLCQDHGLTPDQV 871
Query: 221 --YYHQERLKIAREFGDKAAE-----RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273
K A E + + + G QA + VL QD
Sbjct: 872 VAIASNIGGKQALETVQRLLPVLCQDHGLTLDQVVAIASNGGKQALETVQRLLPVLCQDH 931
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAID 301
G + A S L +
Sbjct: 932 GLTPDQVVAIASNSGGKQALETVQRLLP 959
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 72.4 bits (179), Expect = 1e-15
Identities = 49/153 (32%), Positives = 73/153 (47%), Gaps = 40/153 (26%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L N A++ NLGN G YDEA+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIEY 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
++ LE+ + +E A YNLGN Y+ +G EAI+Y
Sbjct: 66 YQKALEL----DPNNAE--AWYNLGNAYYKQGD--------------------YDEAIEY 99
Query: 183 YEQNLALMKEIN-DTAAQGRACGNLGNTYYLLG 214
Y++ AL E++ + A A NLGN G
Sbjct: 100 YQK--AL--ELDPNNAE---AKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 71.3 bits (176), Expect = 4e-15
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 40/151 (26%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
NLGN G YDEA+ ++ LE+ + +E A YNLGN Y+ +G
Sbjct: 14 NLGNAYYKQGDYDEAIEYYQKALEL----DPNNAE--AWYNLGNAYYKQGD--------- 58
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYH 223
EAI+YY++ AL E++ + A A NLGN YY G++ +AI Y+
Sbjct: 59 -----------YDEAIEYYQK--AL--ELDPNNAE---AWYNLGNAYYKQGDYDEAIEYY 100
Query: 224 QERLKIAREFGDKAAERRANSNLGNSHIFLG 254
Q+ L++ + A NLGN+ G
Sbjct: 101 QKALELDPNNAE------AKQNLGNAKQKQG 125
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 62.8 bits (154), Expect = 3e-12
Identities = 49/149 (32%), Positives = 73/149 (48%), Gaps = 38/149 (25%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A YNLGN Y+ +G EAI+YY++ AL E++ A+
Sbjct: 11 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPNNAE-- 44
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ AE A NLGN++ G+Y A E
Sbjct: 45 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN----AE--AWYNLGNAYYKQGDYDEAIE 98
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+Y++ L L + A+A +LGN
Sbjct: 99 YYQKALELDPNN------AEAKQNLGNAK 121
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125 | Back alignment and structure |
|---|
Score = 40.5 bits (96), Expect = 2e-04
Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 12/108 (11%)
Query: 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAID 301
A NLGN++ G+Y A E+Y++ L L + A+A Y+LGN Y DY AI+
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNN------AEAWYNLGNAYYKQGDYDEAIE 64
Query: 302 YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
Y+ + L + + A ++LGNA+ +G++++A+ + K LE+
Sbjct: 65 YYQKALELDPNNAE------AWYNLGNAYYKQGDYDEAIEYYQKALEL 106
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 74.0 bits (181), Expect = 1e-14
Identities = 20/198 (10%), Positives = 52/198 (26%), Gaps = 22/198 (11%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
+ + + DY+ + K+ L D + N
Sbjct: 108 HPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAE 167
Query: 113 MGKYDEAMVCCKRHLEISRQLN-DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
G + + ++ L+ L+ ++ + + YN + +
Sbjct: 168 NGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR---------------- 211
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER-LKIA 230
+E++ + + + IN A G+ G L + I ++
Sbjct: 212 ----YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFF 267
Query: 231 REFGDKAAERRANSNLGN 248
A + + +
Sbjct: 268 DILEMHAYKEALVNKISR 285
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 69.4 bits (169), Expect = 4e-13
Identities = 27/219 (12%), Positives = 63/219 (28%), Gaps = 22/219 (10%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ Y++ +L + + + + Y+ ++
Sbjct: 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K+ L D + N+Y G L++ I
Sbjct: 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGY--------------------LKKGIDL 177
Query: 183 YEQNLALMKEINDTAA-QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERR 241
+EQ L ++ ++D + N YL +++++Y + ++I+ A +
Sbjct: 178 FEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237
Query: 242 ANSNLGNSHIFLGEYQ-AASEHYKRTLVLAQDLGDRAVE 279
G L + + YK+ L A +
Sbjct: 238 LYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 67.5 bits (164), Expect = 2e-12
Identities = 26/225 (11%), Positives = 56/225 (24%), Gaps = 21/225 (9%)
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
+ + K + L +Y E L+ + + Y +
Sbjct: 67 LIYSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVL 126
Query: 152 AKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211
K + I ++ L D + N Y
Sbjct: 127 KKVD--------------------YEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYA 166
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEHYKRTLVLA 270
G K+ I ++ LK D + N + Y+ + + + ++
Sbjct: 167 ENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEIS 226
Query: 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315
+ A+ Q Y G L I+ + +++
Sbjct: 227 CRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILE 271
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 49.4 bits (117), Expect = 1e-06
Identities = 8/103 (7%), Positives = 30/103 (29%), Gaps = 1/103 (0%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV 112
D+ + A + Y++++ + + ++ + + G L+
Sbjct: 189 HDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRK 248
Query: 113 MGKYDEAMVCC-KRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
+ + + K+ L + + + + H
Sbjct: 249 LEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRLEHHHH 291
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} Length = 293 | Back alignment and structure |
|---|
Score = 45.9 bits (108), Expect = 2e-05
Identities = 21/155 (13%), Positives = 46/155 (29%), Gaps = 1/155 (0%)
Query: 203 CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262
+ +K+ LK + + + + +Y+
Sbjct: 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILE 137
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM-DRVGEGR 321
K+ L D ++ N Y ID + L + L + + +
Sbjct: 138 LKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK 197
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356
++ A +E++LY K +EIS ++
Sbjct: 198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSM 232
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 73.7 bits (180), Expect = 9e-14
Identities = 43/234 (18%), Positives = 83/234 (35%), Gaps = 44/234 (18%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ L N G+ ++A++ +++ L + A + NL + L+ GK EA++
Sbjct: 12 LNNLANIKREQGNIEEAVRLYRKALEVFPEF------AAAHSNLASVLQQQGKLQEALMH 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
K + IS A N+GN +Q A++
Sbjct: 66 YKEAIRISPTF------ADAYSNMGNTLKEMQD--------------------VQGALQC 99
Query: 183 YEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242
Y + + + A A NL + + GN +AI ++ LK+ +F D A
Sbjct: 100 YTRAIQI------NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------A 147
Query: 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296
NL + + ++ E K+ + + D ++ Y L +
Sbjct: 148 YCNLAHCLQIVCDWTDYDERMKKLVSIVADQLEKNRLPSVHPHHSMLYPLSHGF 201
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 72.2 bits (176), Expect = 3e-13
Identities = 40/208 (19%), Positives = 76/208 (36%), Gaps = 44/208 (21%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+L NL N+ +G ++EA++ Y + L + E
Sbjct: 11 SLNNLANIKREQGN--------------------IEEAVRLYRKALEVFPE------FAA 44
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NL + G ++A+ +++E ++I+ F D A SN+GN+ + + Q A +
Sbjct: 45 AHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------AYSNMGNTLKEMQDVQGALQ 98
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
Y R + + A A +L + + + P AI + L + D
Sbjct: 99 CYTRAIQINPAF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------ 146
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEI 349
A +L + + K + I
Sbjct: 147 AYCNLAHCLQIVCDWTDYDERMKKLVSI 174
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 67.1 bits (163), Expect = 9e-12
Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 18/158 (11%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+ NL N GN ++A+ +++ L++ EF A+SNL + G+ Q A
Sbjct: 11 SLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALM 64
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321
HYK + ++ A A ++GNT ++D A+ + R + I D
Sbjct: 65 HYKEAIRISPTF------ADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFAD------ 112
Query: 322 ACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQ 359
A +L + H GN +A+ L++ D
Sbjct: 113 AHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCN 150
|
| >3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723 | Back alignment and structure |
|---|
Score = 54.0 bits (129), Expect = 1e-07
Identities = 24/124 (19%), Positives = 45/124 (36%), Gaps = 16/124 (12%)
Query: 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91
L + G + + ++ AI+ + YS +GN + D Q A+Q + + + +
Sbjct: 53 LQQQGKLQEALMHYKEAIRISPTF----ADAYSNMGNTLKEMQDVQGALQCYTRAIQINP 108
Query: 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYH 151
A + NL + K G EA+ + L++ D A NL +
Sbjct: 109 AF------ADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPD------AYCNLAHCLQ 156
Query: 152 AKGK 155
Sbjct: 157 IVCD 160
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 65.1 bits (159), Expect = 4e-12
Identities = 22/188 (11%), Positives = 47/188 (25%), Gaps = 45/188 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
G D++ A+ ++ N+G ++ EA
Sbjct: 9 LWNEGVLAADKKDWKGALDAFSAVQDP---------HSRICFNIGCMYTILKNMTEAEKA 59
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
R + + L+ A + G +Y+ K AIK
Sbjct: 60 FTRSINR----DKHLAV--AYFQRGMLYYQTEK--------------------YDLAIKD 93
Query: 183 YEQNLALMKEINDTAAQGRACG----------NLGNTYYLLGNFKQAIYYHQERLKIARE 232
++ L ++ + N+ Y +K+A + E
Sbjct: 94 LKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153
Query: 233 FGDKAAER 240
++
Sbjct: 154 PRHSKIDK 161
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 63.6 bits (155), Expect = 1e-11
Identities = 36/200 (18%), Positives = 58/200 (29%), Gaps = 53/200 (26%)
Query: 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
L EA S N G + A L+ + D S +N+G +Y
Sbjct: 3 LVEAISLWNEGVLAADKKDWKGA-------LDAFSAVQDPHSR--ICFNIGCMYTILKN- 52
Query: 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216
+ EA K + + ++ + A A G YY +
Sbjct: 53 -------------------MTEAEKAFTR--SI--NRDKHLAV--AYFQRGMLYYQTEKY 87
Query: 217 KQAIYYHQERLKIAR------------EFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
AI +E L R +F A E N+ + E++ A E
Sbjct: 88 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE--VLYNIAFMYAKKEEWKKAEEQLA 145
Query: 265 RTLVL----AQDLGDRAVEA 280
+ D+A+E
Sbjct: 146 LATSMKSEPRHSKIDKAMEC 165
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.3 bits (144), Expect = 3e-10
Identities = 24/171 (14%), Positives = 49/171 (28%), Gaps = 45/171 (26%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+L+N G + K + A+ + + D + R
Sbjct: 8 SLWNEGVLAADKKD--------------------WKGALDAFSA-------VQDPHS--R 38
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
C N+G Y +L N +A + + A G + +Y A +
Sbjct: 39 ICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV------AYFQRGMLYYQTEKYDLAIK 92
Query: 262 HYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
K L+ + L + + Y++ Y ++ A +
Sbjct: 93 DLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 143
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 59.0 bits (143), Expect = 4e-10
Identities = 28/158 (17%), Positives = 52/158 (32%), Gaps = 20/158 (12%)
Query: 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104
++ A+ A + S I +G Y L + +A + + + +++ A +
Sbjct: 22 WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AVAYF 75
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEI----------SRQLNDKLSEGRALYNLGNVYHAKG 154
G KYD A+ K L L KL LYN+ +Y K
Sbjct: 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKE 135
Query: 155 ---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
KA ++ E + +A++ +
Sbjct: 136 EWKKAEEQL-ALATSMKSEPRHSKIDKAMECVWKQKLY 172
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213 | Back alignment and structure |
|---|
Score = 54.0 bits (130), Expect = 2e-08
Identities = 28/148 (18%), Positives = 51/148 (34%), Gaps = 29/148 (19%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER--RANSNLGNSHIFLGEYQAASEH 262
N G ++K A+ F + R N+G + L A +
Sbjct: 11 NEGVLAADKKDWKGAL----------DAF-SAVQDPHSRICFNIGCMYTILKNMTEAEKA 59
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI-DYH--LRHL----IIAQQLMD 315
+ R++ + L A A + G Y Y AI D L L +I +++
Sbjct: 60 FTRSINRDKHL------AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 113
Query: 316 RVGEGRAC---WSLGNAHAARGNHEKAL 340
+ AC +++ +A + +KA
Sbjct: 114 LQFKLFACEVLYNIAFMYAKKEEWKKAE 141
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-11
Identities = 11/125 (8%), Positives = 33/125 (26%), Gaps = 30/125 (24%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
G G Y E++ ++ +++ + + S+ G + +
Sbjct: 11 LEGVLQYDAGNYTESIDLFEKAIQL----DPEESK--YWLMKGKALYNLER--------- 55
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
+EA+ Y + + + + + + +
Sbjct: 56 -----------YEEAVDCYNY--VI--NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAE 100
Query: 225 ERLKI 229
R K+
Sbjct: 101 ARAKL 105
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112 | Back alignment and structure |
|---|
Score = 60.2 bits (147), Expect = 2e-11
Identities = 15/128 (11%), Positives = 36/128 (28%), Gaps = 30/128 (23%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
Y G + G+Y +++ ++ + L E+K G L + +Y+EA+
Sbjct: 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPE------ESKYWLMKGKALYNLERYEEAVD 61
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C + + ++ + + + +
Sbjct: 62 CYNYVINV--IEDEYNKD--VWAAKADALRYIEG--------------------KEVEAE 97
Query: 182 YYEQNLAL 189
E L
Sbjct: 98 IAEARAKL 105
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 29/213 (13%), Positives = 54/213 (25%), Gaps = 45/213 (21%)
Query: 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
D + + + + + + L + MG + +R L +
Sbjct: 3 ADGPRELLQLRAAVRHRPQ------DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH 56
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193
A+ LG V + + EA +Q
Sbjct: 57 ------PEAVARLGRVRWTQQR--------------------HAEAAVLLQQASDA---- 86
Query: 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL 253
LG+ G + A + ++ E + L N L
Sbjct: 87 --APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEE------PYITAQLLNWRRRL 138
Query: 254 GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
+++A + + A G AVE A S
Sbjct: 139 CDWRALDVLSAQ-VRAAVAQGVGAVEPFAFLSE 170
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 63.3 bits (154), Expect = 1e-10
Identities = 25/198 (12%), Positives = 54/198 (27%), Gaps = 42/198 (21%)
Query: 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME 94
D + +AA++ D + L +A +GD ++ L L
Sbjct: 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLALHPGH- 56
Query: 95 DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
++ LG ++ EA V ++ + + + LG+ G
Sbjct: 57 -----PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALEDAG 105
Query: 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214
+ + A Y + L+ E + L N L
Sbjct: 106 Q--------------------AEAAAAAYTRAHQLLPE------EPYITAQLLNWRRRLC 139
Query: 215 NFKQAIYYHQERLKIARE 232
+++ + +
Sbjct: 140 DWRALDVLSAQVRAAVAQ 157
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568 | Back alignment and structure |
|---|
Score = 49.5 bits (118), Expect = 3e-06
Identities = 20/148 (13%), Positives = 44/148 (29%), Gaps = 18/148 (12%)
Query: 212 LLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271
+ + + + + ++ + A L ++ + +G+ A +R L L
Sbjct: 1 MTADGPRELLQLRAAVRHRPQDFV------AWLMLADAELGMGDTTAGEMAVQRGLALHP 54
Query: 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331
+A LG + + A + A + LG+A
Sbjct: 55 GH------PEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEH------PGIALWLGHALE 102
Query: 332 ARGNHEKALYFATKHLEISKQLGDPLGQ 359
G E A T+ ++ + Q
Sbjct: 103 DAGQAEAAAAAYTRAHQLLPEEPYITAQ 130
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 57.0 bits (139), Expect = 1e-10
Identities = 31/92 (33%), Positives = 48/92 (52%), Gaps = 12/92 (13%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+ LGNAY+ GDY +A++Y+++ L L A++ NLGN G YDEA+
Sbjct: 12 WYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEY 65
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154
++ LE+ + +E A NLGN +G
Sbjct: 66 YQKALEL----DPNNAE--AKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 36/114 (31%), Positives = 53/114 (46%), Gaps = 34/114 (29%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQG 200
A YNLGN Y+ +G EAI+YY++ AL E++ + A
Sbjct: 11 AWYNLGNAYYKQGD--------------------YDEAIEYYQK--AL--ELDPNNAE-- 44
Query: 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN+ G
Sbjct: 45 -AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------AKQNLGNAKQKQG 91
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91 | Back alignment and structure |
|---|
Score = 48.2 bits (116), Expect = 2e-07
Identities = 30/89 (33%), Positives = 47/89 (52%), Gaps = 12/89 (13%)
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A NLGN YY G++ +AI Y+Q+ L++ + A NLGN++ G+Y A E
Sbjct: 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------AWYNLGNAYYKQGDYDEAIE 64
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTY 290
+Y++ L L + A+A +LGN
Sbjct: 65 YYQKALELDPNN------AEAKQNLGNAK 87
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 4e-10
Identities = 23/132 (17%), Positives = 41/132 (31%), Gaps = 26/132 (19%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+A+ YYE+ +A + D A LG+T+ LG +++A +K
Sbjct: 6 EAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA 62
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
LG Y+ E + + D ++
Sbjct: 63 ------LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDET-----------------IQS 99
Query: 296 YPTAIDYHLRHL 307
Y AI ++ L
Sbjct: 100 YKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 54.7 bits (132), Expect = 2e-09
Identities = 19/118 (16%), Positives = 43/118 (36%), Gaps = 12/118 (10%)
Query: 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132
LG +A+ Y+++ + +D A+ LG+T + +G+Y +A ++
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 133 LNDKLSEGRALYNLGNVYHAKG---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187
V + G + + + + +E ++AI +Y L
Sbjct: 60 HQA------LRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 54.3 bits (131), Expect = 2e-09
Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 7/108 (6%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G V +++ AI +G Y LG+ + LG+Y+KA + N
Sbjct: 4 GLEAQAVPYYEKAIASGLQGKDLAEC-YLGLGSTFRTLGEYRKAEAVLANGVKQFPN--- 59
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
L +G+Y++ + + + + S +A+
Sbjct: 60 ---HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAI 104
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 1e-08
Identities = 17/156 (10%), Positives = 37/156 (23%), Gaps = 46/156 (29%)
Query: 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171
V+G +A+ ++ + Q D LG+ + G+
Sbjct: 2 VLGLEAQAVPYYEKAIASGLQGKDLA---ECYLGLGSTFRTLGE---------------- 42
Query: 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231
++A + Y LG ++Q + + +
Sbjct: 43 ----YRKAEAVLANGVKQFPNHQA------LRVFYAMVLYNLGRYEQGVELLLKIIAETS 92
Query: 232 EFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267
+ + Y+ A Y L
Sbjct: 93 D-----------------DETIQSYKQAILFYADKL 111
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117 | Back alignment and structure |
|---|
Score = 43.6 bits (103), Expect = 1e-05
Identities = 18/100 (18%), Positives = 31/100 (31%), Gaps = 4/100 (4%)
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312
LG A +Y++ + D A+ LG+T+ L +Y A +
Sbjct: 3 LGLEAQAVPYYEKAIASGLQGKDL---AECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN 59
Query: 313 LMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351
RV ++LG K + + I
Sbjct: 60 HQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQS 99
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 56.5 bits (137), Expect = 5e-10
Identities = 21/142 (14%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
LGNA + D++KA ++ + + L + N K+ E +
Sbjct: 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPS------NITFYNNKAAVYFEEKKFAECVQF 64
Query: 123 CKRHLEISRQ-LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C++ +E+ R+ D +A+ GN + + L A++
Sbjct: 65 CEKAVEVGRETRADYKLIAKAMSRAGNAFQKQND--------------------LSLAVQ 104
Query: 182 YYEQNLALMKEINDTAAQGRAC 203
++ ++L+ + + +
Sbjct: 105 WFHRSLSE-FRDPELVKKVKEL 125
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 55.0 bits (133), Expect = 2e-09
Identities = 21/132 (15%), Positives = 49/132 (37%), Gaps = 27/132 (20%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
A +LGN + + ++A +Y++ A+ E++ +
Sbjct: 10 AEKDLGNAAYKQKD--------------------FEKAHVHYDK--AI--ELDPSNIT-- 43
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAAS 260
N Y+ F + + + ++ +++ RE +A S GN+ + A
Sbjct: 44 FYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAV 103
Query: 261 EHYKRTLVLAQD 272
+ + R+L +D
Sbjct: 104 QWFHRSLSEFRD 115
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 6e-08
Identities = 22/115 (19%), Positives = 39/115 (33%), Gaps = 7/115 (6%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
G K D + AI+ + Y+ YF + + +Q+ ++ +
Sbjct: 14 LGNAAYKQKDFEKAHVHYDKAIELDPSN----ITFYNNKAAVYFEEKKFAECVQFCEKAV 69
Query: 88 TLARNM-EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR--QLNDKLSE 139
+ R D AK+ GN + A+ R L R +L K+ E
Sbjct: 70 EVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFRDPELVKKVKE 124
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.9 bits (112), Expect = 1e-06
Identities = 17/100 (17%), Positives = 39/100 (39%), Gaps = 9/100 (9%)
Query: 205 NLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263
+LGN Y +F++A +Y + A E +N + ++ +
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDK-----AIELDPSNIT--FYNNKAAVYFEEKKFAECVQFC 65
Query: 264 KRTLVLAQD-LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
++ + + ++ D + A+A GN + D A+ +
Sbjct: 66 EKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQW 105
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127 | Back alignment and structure |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 21/128 (16%), Positives = 41/128 (32%), Gaps = 27/128 (21%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
+LGN +++A V + +E L+ N VY + K
Sbjct: 13 DLGNAAYKQKDFEKAHVHYDKAIE----LDPSNIT--FYNNKAAVYFEEKK--------- 57
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEIN-DTAAQGRACGNLGNTYYLLGNFKQAIYYH 223
E +++ E+ + + +E D +A GN + + A+ +
Sbjct: 58 -----------FAECVQFCEKAVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWF 106
Query: 224 QERLKIAR 231
L R
Sbjct: 107 HRSLSEFR 114
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 53.8 bits (130), Expect = 5e-09
Identities = 24/142 (16%), Positives = 50/142 (35%), Gaps = 28/142 (19%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LGN + D+ A++++ + L N G Y++
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKGDYNKCREL 60
Query: 123 CKRHLEISRQ-LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C++ +E+ R+ D +A +GN Y + K ++AI
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK--------------------YKDAIH 100
Query: 182 YYEQNLALMKEINDTAAQGRAC 203
+Y ++LA + D + +
Sbjct: 101 FYNKSLAEHRT-PDVLKKCQQA 121
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 23/105 (21%), Positives = 39/105 (37%), Gaps = 5/105 (4%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
G K D + + A + + + YF GDY K + ++ +
Sbjct: 10 LGNDAYKKKDFDTALKHYDKAKELDPTN----MTYITNQAAVYFEKGDYNKCRELCEKAI 65
Query: 88 TLAR-NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
+ R N ED AK+ +GN+ KY +A+ + L R
Sbjct: 66 EVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 2e-07
Identities = 23/132 (17%), Positives = 50/132 (37%), Gaps = 27/132 (20%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LGN + K A+K+Y++ A E++ T
Sbjct: 6 KEKELGNDAYKKKD--------------------FDTALKHYDK--AK--ELDPTNMT-- 39
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAAS 260
N Y+ G++ + ++ +++ RE + + +A + +GNS+ +Y+ A
Sbjct: 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Query: 261 EHYKRTLVLAQD 272
Y ++L +
Sbjct: 100 HFYNKSLAEHRT 111
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 9e-04
Identities = 29/142 (20%), Positives = 54/142 (38%), Gaps = 25/142 (17%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
LGN +D A+ + E L+ + N VY KG
Sbjct: 9 ELGNDAYKKKDFDTALKHYDKAKE----LDPTNMT--YITNQAAVYFEKGD--------- 53
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
Y + ++C ++AI+ +N ++I +A +GN+Y+ +K AI+++
Sbjct: 54 ---YNKCRELC-EKAIEVGRENREDYRQI------AKAYARIGNSYFKEEKYKDAIHFYN 103
Query: 225 ERLKIAREFGDKAAERRANSNL 246
+ L R ++A L
Sbjct: 104 KSLAEHRTPDVLKKCQQAEKIL 125
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 53.1 bits (128), Expect = 7e-09
Identities = 27/131 (20%), Positives = 39/131 (29%), Gaps = 16/131 (12%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
+Q + E LA R LG TY F A+ + + L +
Sbjct: 1 MQAITERLEAMLA----QGTDNMLLRF--TLGKTYAEHEQFDAALPHLRAALDFDPTYSV 54
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
A LG + G+ A + ++ L AQ GD Q L L
Sbjct: 55 ------AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGD----QQVVKELQVFLRRLAR 104
Query: 296 YPTAIDYHLRH 306
+H H
Sbjct: 105 EDALEHHHHHH 115
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 47.7 bits (114), Expect = 5e-07
Identities = 18/115 (15%), Positives = 36/115 (31%), Gaps = 14/115 (12%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+A + GTD+ + LG Y + A+ + + L +
Sbjct: 5 TERLEAMLAQGTDN----MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTY------SV 54
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
+ LG TL+ G A + L ++ D+ + + L +
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQ----QVVKELQVFLRRLARE 105
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 1e-06
Identities = 21/122 (17%), Positives = 34/122 (27%), Gaps = 30/122 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+ LG Y + A+ + AL + + T +
Sbjct: 21 LRFTLGKTYAEHEQ--------------------FDAALPHLRA--AL--DFDPTYSV-- 54
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
A LG T G+ A + L A+ GD+ + L L A
Sbjct: 55 AWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVK----ELQVFLRRLAREDALEH 110
Query: 262 HY 263
H+
Sbjct: 111 HH 112
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 55.3 bits (134), Expect = 1e-08
Identities = 56/321 (17%), Positives = 103/321 (32%), Gaps = 102/321 (31%)
Query: 66 LGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-----YDEAM 120
LG + D+ +A +Y ++ L E NLG G+ +A
Sbjct: 12 LGAKSYKEKDFTQAKKYFEK---AC-----DLKENSGCFNLGVLYY-QGQGVEKNLKKAA 62
Query: 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180
+ LN + LGN+Y++ G+ Q+ +A+
Sbjct: 63 ----SFYAKACDLNY----SNGCHLLGNLYYS-----GQGVSQNT-----------NKAL 98
Query: 181 KYYEQNLALMKEINDTAAQG--RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFG 234
+YY + C +LG Y+ +FK+A+ Y
Sbjct: 99 QYYSK----------ACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFT---------- 138
Query: 235 DKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSL 286
KA + + LG+ + G + A Y + A DL D + C++
Sbjct: 139 -KACDLNDGDGCTILGSLY-DAGRGTPKDLKKALASYDK----ACDLKD----SPGCFNA 188
Query: 287 GNTYT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEK 338
GN Y +++ A+ + + + G C++LG G N ++
Sbjct: 189 GNMYHHGEGATKNFKEALARYSK---ACEL-----ENGGGCFNLGAMQYNGEGVTRNEKQ 240
Query: 339 ALYFATKHLEISKQLGDPLGQ 359
A+ + +LG
Sbjct: 241 AIEN----FKKGCKLGAKGAC 257
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 2e-06
Identities = 51/241 (21%), Positives = 79/241 (32%), Gaps = 84/241 (34%)
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
+ L LG + + +A KY+E+
Sbjct: 7 KELVGLGAKSYKEKD--------------------FTQAKKYFEK----------ACDLK 36
Query: 201 --RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHI 251
C NLG YY G N K+A ++ KA + LGN +
Sbjct: 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYA-----------KACDLNYSNGCHLLGNLY- 84
Query: 252 FLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT----LLRDYPTAIDY 302
+ G+ A ++Y + A DL A+ C SLG Y + RD+ A++Y
Sbjct: 85 YSGQGVSQNTNKALQYYSK----ACDLKY----AEGCASLGGIYHDGKVVTRDFKKAVEY 136
Query: 303 HLRHLIIAQQLMDRVGEGRACWSLGNAHA-ARG---NHEKALYFATKHLEISKQLGDPLG 358
+ +G C LG+ + RG + +KAL K + L D G
Sbjct: 137 FTK---ACDL-----NDGDGCTILGSLYDAGRGTPKDLKKALASYDK----ACDLKDSPG 184
Query: 359 Q 359
Sbjct: 185 C 185
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 Length = 273 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 37/180 (20%), Positives = 63/180 (35%), Gaps = 50/180 (27%)
Query: 198 AQG--RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHIF 252
A+ + LG Y +F QA Y + KA + NLG + +
Sbjct: 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFE-----------KACDLKENSGCFNLGVLY-Y 49
Query: 253 LGE-----YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT----LLRDYPTAIDYH 303
G+ + A+ Y + A DL + C+ LGN Y + ++ A+ Y+
Sbjct: 50 QGQGVEKNLKKAASFYAK----ACDLNY----SNGCHLLGNLYYSGQGVSQNTNKALQYY 101
Query: 304 LRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEKALYFATKHLEISKQLGDPLGQ 359
+ C SLG + + + +KA+ + TK + L D G
Sbjct: 102 SKA---CDL-----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTK----ACDLNDGDGC 149
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.2 bits (137), Expect = 1e-08
Identities = 60/370 (16%), Positives = 106/370 (28%), Gaps = 109/370 (29%)
Query: 253 LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI--DYHLRHLIIA 310
GE+Q YK L D V+ C + +D P +I + H+I++
Sbjct: 11 TGEHQ---YQYKDIL---SVFEDAFVDNFDCKDV-------QDMPKSILSKEEIDHIIMS 57
Query: 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQ-LGDPLGQVTAQMNVTDL 369
+ + R W+L +K E+ ++ + + L ++N L
Sbjct: 58 KDAVSGTL--RLFWTL----------------LSKQEEMVQKFVEEVL-----RINYKFL 94
Query: 370 RKALGMSTNDLSPDSLQLI---NSYANANQPSPGVRRYNRVRRSSMEQLD--LIKLTPEN 424
+ S + I + N NQ +YN R +L L++L P
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDNQV---FAKYNVSRLQPYLKLRQALLELRPAK 151
Query: 425 K---------GKQS--GSSNSSE--------------LSKCDEEESFFELLSRF--QSER 457
GK S L C+ E+ E+L + Q +
Sbjct: 152 NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211
Query: 458 MDDQRCSLSARQSENKENLQRITNTKKSQPSAPRATTI------PAH------------T 499
R S+ ++Q + T
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLT 271
Query: 500 PGDDDLLDMIVGLQSKR--MDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLEDQRSH 557
+ D + + +D L PD+ +L++ R +D
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTL---------TPDEV-KSLLLKYLDCRPQD---- 317
Query: 558 LPQEGSTV-P 566
LP+E T P
Sbjct: 318 LPREVLTTNP 327
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-08
Identities = 83/555 (14%), Positives = 156/555 (28%), Gaps = 161/555 (29%)
Query: 75 DYQKAM-QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133
+Y+ M + + + + L N +V KY+ V R L+ +L
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRD---RLYNDNQVFAKYN---VS--R-LQPYLKL 140
Query: 134 NDKLSEGRALYNLGNVYHAKGKAIGK---VGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190
L E R N+ + G GK VCL ++
Sbjct: 141 RQALLELRPAKNVL-IDGVLG--SGKTWVALD-----------VCLSYKVQ--------- 177
Query: 191 KEINDTAAQGRACGNLGNTYYL-LGNFK---------QAIYYHQERLKIAREFGDKAAER 240
C ++L L N Q + Y + +R +
Sbjct: 178 ------------CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEA--QACYSLGNTYTLLRDYP 297
R +S L S+ Y+ L++ ++ + +A A +C L T R
Sbjct: 226 RIHSIQAELRRLL-----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTT----RF-- 274
Query: 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL-YFATKHLEISKQ---- 352
+Q+ D + + H+ ++ K+L+ Q
Sbjct: 275 -------------KQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL-KYLDCRPQDLPR 320
Query: 353 ---LGDPL--GQVTA-------------QMNVTDLRKALGMSTNDLSPDSLQLINSY--- 391
+P + +N L + S N L P + +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR--KMFDRL 378
Query: 392 ----ANANQPSPGVRRY--NRVRRSSMEQLDLIKLTPENKGKQSGSSNSSELSKCDEEES 445
+A+ P+ + + ++ M ++ + K S L + +ES
Sbjct: 379 SVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLH-------KYS-------LVEKQPKES 424
Query: 446 FFELLSRFQSERMDDQRCSLSARQSENKENL-QRITNTKKSQPSAPRATTIPAHTPGDDD 504
+ S + + + EN+ L + I + + IP P D
Sbjct: 425 TISIPSIYLELK----------VKLENEYALHRSIVDHYNIPKTFDSDDLIP---PYLDQ 471
Query: 505 LLDMIVG--LQSKRMDEQRAALPHLADRENAIPDDGFLDMLIRCQGARLEDQRSHLPQEG 562
+G L++ E+ + D FL+ IR S L
Sbjct: 472 YFYSHIGHHLKNIEHPERMTLFRMV------FLDFRFLEQKIRHDSTAWNASGSILN--- 522
Query: 563 STVPDEDFF-SLITR 576
T+ F+ I
Sbjct: 523 -TLQQLKFYKPYICD 536
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 51.7 bits (124), Expect = 5e-08
Identities = 15/131 (11%), Positives = 38/131 (29%), Gaps = 32/131 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
+Y+ ++ KG+ ++EA ++ + + +
Sbjct: 38 DIYSYAYDFYNKGR--------------------IEEAEVFFRF--LCIYDFYNV----D 71
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
L Y + F+QA + + + + G + L A E
Sbjct: 72 YIMGLAAIYQIKEQFQQAADLYAVAFALGKNDY------TPVFHTGQCQLRLKAPLKAKE 125
Query: 262 HYKRTLVLAQD 272
++ + + D
Sbjct: 126 CFELVIQHSND 136
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 49.0 bits (117), Expect = 4e-07
Identities = 11/130 (8%), Positives = 34/130 (26%), Gaps = 26/130 (20%)
Query: 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116
+ IY ++ G ++A + + L ++ ++
Sbjct: 34 DMMDDIY-SYAYDFYNKGRIEEAEVFFRFLCIYDFY------NVDYIMGLAAIYQIKEQF 86
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
+A + + ++ +++ G P + K C
Sbjct: 87 QQAADLYAVAFALGK------NDYTPVFHTGQCQLRLKA-------------PLKAKECF 127
Query: 177 QEAIKYYEQN 186
+ I++
Sbjct: 128 ELVIQHSNDE 137
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 6e-07
Identities = 14/134 (10%), Positives = 32/134 (23%), Gaps = 12/134 (8%)
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228
E + I L + +Y G ++A + +
Sbjct: 5 ITENESISTAVIDAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCI 64
Query: 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288
L + ++Q A++ Y L ++ + + G
Sbjct: 65 Y------DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN------DYTPVFHTGQ 112
Query: 289 TYTLLRDYPTAIDY 302
L+ A +
Sbjct: 113 CQLRLKAPLKAKEC 126
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 7e-08
Identities = 14/102 (13%), Positives = 35/102 (34%), Gaps = 14/102 (13%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
L + N +A+ +E ++ ++ +LG + L A + Y
Sbjct: 12 ALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYA 65
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306
+ + +A++ G + L + +++H H
Sbjct: 66 QGIEVAREEGT----QKDLSELQDAKLKAE----GLEHHHHH 99
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 3e-07
Identities = 18/122 (14%), Positives = 37/122 (30%), Gaps = 30/122 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
Y L + A+ +E+ + E +
Sbjct: 9 TRYALAQEHLKHDN--------------------ASRALALFEE--LV--ETDPDYVG-- 42
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
+LG Y L AI + + +++ARE G + + S L ++ + +
Sbjct: 43 TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQ----KDLSELQDAKLKAEGLEHHHH 98
Query: 262 HY 263
H+
Sbjct: 99 HH 100
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 47.6 bits (114), Expect = 4e-07
Identities = 10/89 (11%), Positives = 33/89 (37%), Gaps = 10/89 (11%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
L + + +A+ ++ + + + +LG + + + D+A+
Sbjct: 9 TRYALAQEHLKHDNASRALALFEELVETDPDY------VGTYYHLGKLYERLDRTDDAID 62
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVY 150
+ +E++R+ + + L L +
Sbjct: 63 TYAQGIEVAREEGTQ----KDLSELQDAK 87
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100 | Back alignment and structure |
|---|
Score = 38.8 bits (91), Expect = 5e-04
Identities = 16/91 (17%), Positives = 28/91 (30%), Gaps = 8/91 (8%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
+ K + +A F+ ++ D Y LG Y L A+ + Q +
Sbjct: 14 AQEHLKHDNASRALALFEELVETDPDY----VGTYYHLGKLYERLDRTDDAIDTYAQGIE 69
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119
+AR G K L + +
Sbjct: 70 VAREE----GTQKDLSELQDAKLKAEGLEHH 96
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 24/145 (16%), Positives = 39/145 (26%), Gaps = 32/145 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LY LG + GK +A K ++ L R
Sbjct: 20 QLYALGFNQYQAGK--------------------WDDAQKIFQALCMLD------HYDAR 53
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
LG LG ++QA+ + + R + H+ LG+ A
Sbjct: 54 YFLGLGACRQSLGLYEQALQSYSYGALMDINEP------RFPFHAAECHLQLGDLDGAES 107
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSL 286
+ LA A ++
Sbjct: 108 GFYSARALAAAQPAHEALAARAGAM 132
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 2e-07
Identities = 23/150 (15%), Positives = 43/150 (28%), Gaps = 33/150 (22%)
Query: 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116
TL +Y LG + G + A + + L +A+ LG + +G Y
Sbjct: 16 DTLEQLY-ALGFNQYQAGKWDDAQKIFQALCMLDHY------DARYFLGLGACRQSLGLY 68
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
++A+ + ++E R ++ + G L
Sbjct: 69 EQALQSYSYGALM------DINEPRFPFHAAECHLQLGD--------------------L 102
Query: 177 QEAIKYYEQNLALMKEINDTAAQGRACGNL 206
A + AL A G +
Sbjct: 103 DGAESGFYSARALAAAQPAHEALAARAGAM 132
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 48.6 bits (116), Expect = 3e-07
Identities = 18/136 (13%), Positives = 29/136 (21%), Gaps = 32/136 (23%)
Query: 132 QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191
+ N+ G L EA +E
Sbjct: 9 EANNPYMYHENPMEEGLSMLKLAN--------------------LAEAALAFEAVC---- 44
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
+ + A +LG T AI + + ++ L SH
Sbjct: 45 QKEPEREE--AWRSLGLTQAENEKDGLAIIALNHARMLDPKDIA------VHAALAVSHT 96
Query: 252 FLGEYQAASEHYKRTL 267
AA + L
Sbjct: 97 NEHNANAALASLRAWL 112
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 46.7 bits (111), Expect = 1e-06
Identities = 16/131 (12%), Positives = 30/131 (22%), Gaps = 32/131 (24%)
Query: 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164
G ++ + EA + + Q + E A +LG K
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVC----QKEPEREE--AWRSLGLTQAENEK--------- 66
Query: 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224
AI L + L ++ N A+ +
Sbjct: 67 -----------DGLAIIALNHARMLDPKDIA------VHAALAVSHTNEHNANAALASLR 109
Query: 225 ERLKIAREFGD 235
L ++
Sbjct: 110 AWLLSQPQYEQ 120
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.5 bits (108), Expect = 3e-06
Identities = 14/105 (13%), Positives = 30/105 (28%), Gaps = 12/105 (11%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
G + L N +A + + E + A +LG + + A
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPEREE------AWRSLGLTQAENEKDGLAIIALN 75
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
+L + +L ++T + A+ L+
Sbjct: 76 HARMLDPK------DIAVHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 4e-06
Identities = 13/102 (12%), Positives = 23/102 (22%), Gaps = 10/102 (9%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87
EG + K + F+A Q + + LG A+
Sbjct: 23 EGLSMLKLANLAEAALAFEAVCQKEPER----EEAWRSLGLTQAENEKDGLAIIALNHAR 78
Query: 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
L L + + A+ + L
Sbjct: 79 MLDPKDIAVH------AALAVSHTNEHNANAALASLRAWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 43.2 bits (102), Expect = 2e-05
Identities = 11/125 (8%), Positives = 26/125 (20%), Gaps = 32/125 (25%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ G + L + +A + ++ +LG T K A++
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALN 75
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ + L + + A+
Sbjct: 76 HARMLDPKDIA------VHAALAVSHTNEHN--------------------ANAALASLR 109
Query: 185 QNLAL 189
L
Sbjct: 110 AWLLS 114
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 1e-04
Identities = 17/105 (16%), Positives = 29/105 (27%), Gaps = 12/105 (11%)
Query: 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHL 304
G S + L A+ ++ + +A SLG T AI
Sbjct: 22 EEGLSMLKLANLAEAALAFEAVCQKEPER------EEAWRSLGLTQAENEKDGLAIIALN 75
Query: 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
++ + + +L +H N AL L
Sbjct: 76 HARMLDPKDIA------VHAALAVSHTNEHNANAALASLRAWLLS 114
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} Length = 490 | Back alignment and structure |
|---|
Score = 50.7 bits (122), Expect = 8e-07
Identities = 56/312 (17%), Positives = 99/312 (31%), Gaps = 102/312 (32%)
Query: 65 QLGNAYFY-LG---DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG----NTLKVMGKY 116
+LG YF D +AM + ++ + G + LG N V Y
Sbjct: 44 ELGYRYFQGNETTKDLTQAMDWFRR--------AAEQGYTPAEYVLGLRYMNGEGVPQDY 95
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176
+A+ + + +A NLG +YH G + D
Sbjct: 96 AQAV----IWYKKAALKGL----PQAQQNLGVMYHE-----GNGVKVDK----------- 131
Query: 177 QEAIKYYEQNLALMKEINDTAAQG--RACGNLGNTYYLLG-----NFKQAIYYHQERLKI 229
E++K++ A A QG ++G+ Y G ++ A ++
Sbjct: 132 AESVKWFRL--A--------AEQGRDSGQQSMGD-AYFEGDGVTRDYVMAREWYS----- 175
Query: 230 AREFGDKAAER---RANSNLGNSHIFLGE-----YQAASEHYKRTLVLAQDLGDRAVEAQ 281
KAAE+ + + LG + G +++ Y++ + GD
Sbjct: 176 ------KAAEQGNVWSCNQLGYMY-SRGLGVERNDAISAQWYRK----SATSGD----EL 220
Query: 282 ACYSLGNTYT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG-- 334
L + Y + +DY + + A+Q G A + LG
Sbjct: 221 GQLHLADMYYFGIGVTQDYTQSRVLFSQ---SAEQ-----GNSIAQFRLGYILEQGLAGA 272
Query: 335 -NHEKALYFATK 345
KAL + K
Sbjct: 273 KEPLKALEWYRK 284
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 19/145 (13%), Positives = 39/145 (26%), Gaps = 32/145 (22%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LY+L + G ++A ++ + + D+ R
Sbjct: 23 QLYSLAFNQYQSGX--------------------YEDAHXVFQA--LCVLDHYDS----R 56
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
LG +G + AI+ + + E R + + GE A
Sbjct: 57 FFLGLGACRQAMGQYDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGELAEAES 110
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSL 286
L + + + S+
Sbjct: 111 GLFLAQELIANXPEFXELSTRVSSM 135
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 46.1 bits (109), Expect = 3e-06
Identities = 23/147 (15%), Positives = 43/147 (29%), Gaps = 29/147 (19%)
Query: 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED 95
G +G + +D L +Y L + G Y+ A + L
Sbjct: 1 GPLGSGGGTIAMLNEISSDTL---EQLY-SLAFNQYQSGXYEDAHXVFQALCVLDHY--- 53
Query: 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
+++ LG + MG+YD A+ + + E R ++ G+
Sbjct: 54 ---DSRFFLGLGACRQAMGQYDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGE 104
Query: 156 AIGKVGQQDPGEYPEEVKVCLQEAIKY 182
E + L A +
Sbjct: 105 -------------LAEAESGLFLAQEL 118
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148 | Back alignment and structure |
|---|
Score = 39.9 bits (93), Expect = 5e-04
Identities = 14/98 (14%), Positives = 24/98 (24%), Gaps = 12/98 (12%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
+L Y G ++ A Q + LG +G+Y A Y
Sbjct: 26 SLAFNQYQSGXYEDAHXVFQALCVLDHYDSR------FFLGLGACRQAMGQYDLAIHSYS 79
Query: 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
V+ E + + + A
Sbjct: 80 YGAVM------DIXEPRFPFHAAECLLQXGELAEAESG 111
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 43.7 bits (104), Expect = 2e-05
Identities = 23/140 (16%), Positives = 46/140 (32%), Gaps = 33/140 (23%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
GN + +++ A+ ++ + + L A N +G Y A+
Sbjct: 15 LKTEGNEQMKVENFEAAVHFYGKAIELNPA------NAVYFCNRAAAYSKLGNYAGAVQD 68
Query: 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182
C+R + ++ S+ A +G + K EA+ Y
Sbjct: 69 CERAIC----IDPAYSK--AYGRMGLALSSLNK--------------------HVEAVAY 102
Query: 183 YEQNLALMKEINDTAAQGRA 202
Y++ L L + N+T
Sbjct: 103 YKKALELDPD-NETYKSNLK 121
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 4e-05
Identities = 29/156 (18%), Positives = 48/156 (30%), Gaps = 38/156 (24%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
L GN + A+ +Y + A+ E+N A
Sbjct: 14 RLKTEGNEQMKVEN--------------------FEAAVHFYGK--AI--ELNPANA--V 47
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261
N Y LGN+ A+ + + I + A +G + L ++ A
Sbjct: 48 YFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------AYGRMGLALSSLNKHVEAVA 101
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297
+YK+ L L D +L LR+ P
Sbjct: 102 YYKKALELDPD------NETYKSNLKIAELKLREAP 131
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457 | Back alignment and structure |
|---|
Score = 45.8 bits (108), Expect = 3e-05
Identities = 32/159 (20%), Positives = 56/159 (35%), Gaps = 28/159 (17%)
Query: 53 TDDLRTLSAIYSQLGNAYFYLGDYQKAM-QYHK------QDLTLARNMEDKLGEAKSS-- 103
T + +AI + G YF G Y +A+ QY K + L+ +
Sbjct: 261 TKEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAF 320
Query: 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQ 163
NL + +Y +A+ CC + L + N+K LY G
Sbjct: 321 LNLAMCYLKLREYTKAVECCDKALGLDSA-NEK-----GLYRRGEAQLLM---------- 364
Query: 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202
E+ E K ++ ++ QN A +I+ + +
Sbjct: 365 --NEF-ESAKGDFEKVLEVNPQNKAARLQISMCQKKAKE 400
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372 | Back alignment and structure |
|---|
Score = 45.5 bits (107), Expect = 3e-05
Identities = 20/170 (11%), Positives = 39/170 (22%), Gaps = 30/170 (17%)
Query: 23 LELALEGERLCKAGDC---RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79
L + GD +Q+ + + + +K
Sbjct: 197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQ 256
Query: 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139
+ ++ + + + + V GK DE+ +++
Sbjct: 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSW------ 310
Query: 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
LG VY KG +EA Y L
Sbjct: 311 -LNYVLLGKVYEMKGM--------------------NREAADAYLTAFNL 339
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 Length = 138 | Back alignment and structure |
|---|
Score = 42.1 bits (100), Expect = 7e-05
Identities = 27/147 (18%), Positives = 45/147 (30%), Gaps = 54/147 (36%)
Query: 176 LQEAIKYYEQ-----------NLALMKEINDT---------AAQG--RACGNLGNTYYL- 212
L++AI+YY + +L +IN C LG+ Y
Sbjct: 11 LKKAIQYYVKACELNEMFGCLSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENG 70
Query: 213 LG---NFKQAIYYHQERLKIAREFGDKAAER---RANSNLGNSHIFLGE-----YQAASE 261
+ ++A Y+ KA LG + G+ + A +
Sbjct: 71 KYVKKDLRKAAQYYS-----------KACGLNDQDGCLILGYKQ-YAGKGVVKNEKQAVK 118
Query: 262 HYKRTLVLAQDLGDRAVEAQACYSLGN 288
+++ A LG AC L N
Sbjct: 119 TFEK----ACRLGS----EDACGILNN 137
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 43.0 bits (102), Expect = 1e-04
Identities = 26/176 (14%), Positives = 43/176 (24%), Gaps = 52/176 (29%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG- 200
AL L + Q D +A + E+ G
Sbjct: 52 ALALLAQLKIRNP------QQADY-----------PQARQLAEK----------AVEAGS 84
Query: 201 -RACGNLGNTYYL-LG---NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255
L + AI L+ A + A A LG + G
Sbjct: 85 KSGEIVLARVLVNRQAGATDVAHAITL----LQDAARDSESDAAVDAQMLLGLIY-ASGV 139
Query: 256 -----YQAASEHYKRTLVLAQDLGDRAVEAQ----ACYSLGNTYTLLRDYPTAIDY 302
ASE++K + L A+ + G + + A+ +
Sbjct: 140 HGPEDDVKASEYFKG----SSSLSRTG-YAEYWAGMMFQQGEKGFIEPNKQKALHW 190
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} Length = 212 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 5e-04
Identities = 34/180 (18%), Positives = 54/180 (30%), Gaps = 49/180 (27%)
Query: 178 EAIKYYEQNLALMKEINDTAAQG--RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
E Y+Q A G RA L +T+ G++++A Y+ Q
Sbjct: 4 EPGSQYQQ----------QAEAGDRRAQYYLADTWVSSGDYQKAEYWAQ----------- 42
Query: 236 KAAER---RANSNLGNSHIFLGE---YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289
KAA + A + L I + Y A + ++ A + G L
Sbjct: 43 KAAAQGDGDALALLAQLKIRNPQQADYPQARQLAEK----AVEAGS----KSGEIVLARV 94
Query: 290 YT----LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA-RG---NHEKALY 341
D AI A + + A LG +A+ + KA
Sbjct: 95 LVNRQAGATDVAHAITLLQD----AARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASE 150
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118 | Back alignment and structure |
|---|
Score = 39.9 bits (94), Expect = 3e-04
Identities = 25/119 (21%), Positives = 46/119 (38%), Gaps = 13/119 (10%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
EL +G + G+ + + AI+ + +YS AY GDYQKA
Sbjct: 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHN----HVLYSNRSAAYAKKGDYQKAY--- 58
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---SRQLNDKLSE 139
+D +++ K L+ + +++EA + L+ + QL + L
Sbjct: 59 -EDGCKTVDLKPDW--GKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159 | Back alignment and structure |
|---|
Score = 40.6 bits (94), Expect = 3e-04
Identities = 24/158 (15%), Positives = 59/158 (37%), Gaps = 9/158 (5%)
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153
++ A + + V G+YDEA C+R +EIS + + + A ++ +
Sbjct: 5 LKEVVGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDA-FCHAGL 63
Query: 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213
+A+ + +E +A+ Y+ + L + ++ A + L
Sbjct: 64 AEALAGLRS------FDEALHSADKALHYFNRRGELNQ--DEGKLWISAVYSRALALDGL 115
Query: 214 GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
G +A+ ++ +++ E + + + I
Sbjct: 116 GRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 21/106 (19%), Positives = 37/106 (34%), Gaps = 10/106 (9%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+L EG + + + A+ + S AY G ++KA
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPAN----PIYLSNRAAAYSASGQHEKAA--- 65
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
+D LA ++ K +K+ LG M Y A ++ +E
Sbjct: 66 -EDAELATVVDPKY--SKAWSRLGLARFDMADYKGAKEAYEKGIEA 108
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 4e-04
Identities = 26/151 (17%), Positives = 47/151 (31%), Gaps = 19/151 (12%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
GNA +Y KA+ + Q L++A N G++++A +
Sbjct: 16 SEGNAAMARKEYSKAIDLYTQALSIAPA------NPIYLSNRAAAYSASGQHEKAAEDAE 69
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGK------AIGKVGQQDPGEYPEEVKVCLQE 178
++ K S +A LG A K + + + +K L+
Sbjct: 70 LATV----VDPKYS--KAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123
Query: 179 AIKYYEQ-NLALMKEINDTAAQGRACGNLGN 208
+ E+ N +D A G
Sbjct: 124 TKRKIEEANRGAEPPADDVDDAAGASRGAGG 154
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336 | Back alignment and structure |
|---|
Score = 41.8 bits (98), Expect = 4e-04
Identities = 23/137 (16%), Positives = 45/137 (32%), Gaps = 28/137 (20%)
Query: 67 GNAYFYLGD-------YQKAMQYHKQDLTLARNMEDKLGEAKSS--GNLGNTLKVMGKYD 117
G YF G Y+K + + + + + + K + + NL + +
Sbjct: 154 GTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFS 213
Query: 118 EAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177
A+ C + LE+ N+K L G + A E + Q
Sbjct: 214 AAIESCNKALELDSN-NEK-----GLSRRGEAHLAVND-------------FELARADFQ 254
Query: 178 EAIKYYEQNLALMKEIN 194
+ ++ Y N A ++
Sbjct: 255 KVLQLYPNNKAAKTQLA 271
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 17/77 (22%), Positives = 34/77 (44%), Gaps = 7/77 (9%)
Query: 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264
G+ + A+ +E L+ D+A +GN++ LG++Q A +Y+
Sbjct: 5 KTIKELINQGDIENALQALEEFLQTEPVGKDEA-----YYLMGNAYRKLGDWQKALNNYQ 59
Query: 265 RTLVLAQDLGDRAVEAQ 281
+ L D A++A+
Sbjct: 60 SAIELNPD--SPALQAR 74
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99 | Back alignment and structure |
|---|
Score = 38.9 bits (91), Expect = 5e-04
Identities = 13/73 (17%), Positives = 32/73 (43%), Gaps = 9/73 (12%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
++ A++ E+ L E A +GN Y LG++++A+ +Q +++ +
Sbjct: 16 IENALQALEE--FLQTEPVGKD---EAYYLMGNAYRKLGDWQKALNNYQSAIELNPDS-- 68
Query: 236 KAAERRANSNLGN 248
+A + +
Sbjct: 69 --PALQARKMVMD 79
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133 | Back alignment and structure |
|---|
Score = 39.5 bits (93), Expect = 6e-04
Identities = 26/127 (20%), Positives = 47/127 (37%), Gaps = 14/127 (11%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
L + +G + GD + + AI+ D + +YS Y L ++Q A++
Sbjct: 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKD----AKLYSNRAACYTKLLEFQLALK- 71
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI---SRQLNDKLSE 139
D +E K L+ M Y +AM ++ L++ ++ D
Sbjct: 72 ---DCEECIQLEPTF--IKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126
Query: 140 -GRALYN 145
A YN
Sbjct: 127 CMMAQYN 133
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177 | Back alignment and structure |
|---|
Score = 39.8 bits (93), Expect = 8e-04
Identities = 22/182 (12%), Positives = 48/182 (26%), Gaps = 39/182 (21%)
Query: 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
+ + A + Q I+A + ++ LG Y + DY ++ +
Sbjct: 12 RQRDPLHQFASQQNPEAQLQALQDKIRANPQNSEQ----WALLGEYYLWQNDYSNSLLAY 67
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY---DEAMVCCKRHLEISRQLNDKLSEG 140
+Q L L + L L + + L + E
Sbjct: 68 RQALQLRGENAELY------AALATVLYYQASQHMTAQTRAMIDKALALDSN------EI 115
Query: 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG 200
AL L + + +AI+ +++ + L +
Sbjct: 116 TALMLLASDAFMQAN--------------------YAQAIELWQKVMDLNSPRINRTQLV 155
Query: 201 RA 202
+
Sbjct: 156 ES 157
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} Length = 452 | Back alignment and structure |
|---|
Score = 41.3 bits (97), Expect = 8e-04
Identities = 47/334 (14%), Positives = 85/334 (25%), Gaps = 94/334 (28%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+L N GD A Q ++Q LA +LG +++ L + + K
Sbjct: 8 RLANEALKRGDTVTAQQNYQQ---LA-----ELGYSEAQVGLADIQVGTRDPAQI----K 55
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
+ R D A LG + AK G + + EA +
Sbjct: 56 QAEATYRAAADTSPR--AQARLGRLLAAKP---GAT-EAEH-----------HEAESLLK 98
Query: 185 Q-----------NLALM--------------KEINDTAAQG--RACGNLGNTYYLLG--- 214
+ LA++ ++I+ A G A Y G
Sbjct: 99 KAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158
Query: 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE----YQAASEHYKRTLVLA 270
+ + A L + + + +
Sbjct: 159 QHLDDVER----ICKAALNTTDICY----VELATVY-QKKQQPEQQAELLKQMEA----G 205
Query: 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEG--RACWSLGN 328
G A L D AQ L++++ G + SL
Sbjct: 206 VSRGT----VTAQRVDSVARVLGDATLGTPDEKT-----AQALLEKIAPGYPASWVSLAQ 256
Query: 329 AHAARG---NHEKALYFATKHLEISKQLGDPLGQ 359
+ E+ + K+L+ + P +
Sbjct: 257 LLYDFPELGDVEQMM----KYLDNGRAADQPRAE 286
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 8e-04
Identities = 32/147 (21%), Positives = 53/147 (36%), Gaps = 30/147 (20%)
Query: 67 GNAYFYLGDYQKAM-QYHK--------QDLTLARNMEDKLGEAKSS--GNLGNTLKVMGK 115
GN+ F ++AM QY L +D K+ N+ L + +
Sbjct: 186 GNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR 245
Query: 116 YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175
YDEA+ C L + N K AL+ G G+ + +
Sbjct: 246 YDEAIGHCNIVLTEEEK-NPK-----ALFRRGKAKAELGQ-------------MDSARDD 286
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRA 202
++A KY + A+ +E+ A Q +A
Sbjct: 287 FRKAQKYAPDDKAIRRELRALAEQEKA 313
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 100.0 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 100.0 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 100.0 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.98 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.97 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.96 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.95 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.95 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.94 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.94 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.94 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.94 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.94 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.94 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.93 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.93 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.93 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.93 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.92 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.92 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.92 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.92 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.91 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.91 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.91 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.9 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.9 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.89 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.88 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.88 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.88 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 99.88 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.87 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.86 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.85 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.85 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.85 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.84 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.83 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.82 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.81 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.8 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.79 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.79 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.78 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.78 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.78 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.77 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.77 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.76 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.76 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.76 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.76 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 99.76 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.75 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.75 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.75 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.75 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.75 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 99.75 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.73 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 99.72 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.71 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.69 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.67 | |
| 4g5s_E | 26 | PINS homolog, G-protein-signaling modulator 2; gal | 99.67 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.66 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.65 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.65 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.64 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.63 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.62 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.61 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.6 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 99.59 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 99.59 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.55 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.54 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 99.54 | |
| 4g5s_E | 26 | PINS homolog, G-protein-signaling modulator 2; gal | 99.54 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.54 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.53 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 99.52 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.47 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.45 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.44 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.43 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.42 | |
| 4g5o_E | 26 | G-protein-signaling modulator 2; galphai, goloco, | 99.41 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.41 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 99.41 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.41 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.41 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.4 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 99.4 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 99.39 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.38 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 99.38 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.37 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 99.35 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.35 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 99.34 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 99.34 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 99.33 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.3 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.3 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 99.3 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.3 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.29 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 99.29 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 99.29 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.29 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 99.28 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.28 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 99.27 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 99.27 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.27 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.24 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 99.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.23 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 99.21 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.2 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.2 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 99.2 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.19 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.18 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 99.18 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.17 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 99.16 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.16 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.15 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 99.14 | |
| 2om2_B | 36 | Regulator of G-protein signalling 14 goloco motif | 99.14 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 99.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.14 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 99.14 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 99.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 99.11 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.11 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 99.1 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.1 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.09 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 99.09 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 99.05 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 99.04 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 99.04 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 99.03 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 99.03 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 99.03 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.02 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.01 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 99.01 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 99.01 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 99.0 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.99 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.96 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.95 | |
| 4g5o_E | 26 | G-protein-signaling modulator 2; galphai, goloco, | 98.95 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.94 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.91 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.91 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.91 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.9 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.9 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.88 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.87 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.87 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 98.87 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.85 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 98.84 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.84 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.81 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.8 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.79 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 98.79 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.77 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.75 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.7 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 98.66 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.65 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 98.62 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.6 | |
| 2om2_B | 36 | Regulator of G-protein signalling 14 goloco motif | 98.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.6 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 98.56 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 98.53 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.52 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.52 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 98.49 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 98.46 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.41 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 98.37 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 98.16 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 98.13 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 98.09 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 98.02 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 97.99 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.98 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.84 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 97.83 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 97.82 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.75 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 97.69 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.59 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.52 | |
| 2xns_C | 40 | RGS14, regulator of G-protein signaling 14; hydrol | 97.51 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.41 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 97.32 | |
| 2xns_C | 40 | RGS14, regulator of G-protein signaling 14; hydrol | 97.14 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 97.05 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 96.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 96.86 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.51 | |
| 4b4t_S | 523 | RPN3, 26S proteasome regulatory subunit RPN3; hydr | 96.25 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.18 | |
| 4b4t_R | 429 | RPN7, 26S proteasome regulatory subunit RPN7; hydr | 96.1 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 95.54 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.44 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 95.25 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.65 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.47 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.46 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 94.27 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 94.25 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 93.93 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 93.85 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 93.8 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 92.91 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.58 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 91.34 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 91.16 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.6 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.23 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 88.58 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 87.83 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 87.76 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 87.49 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 87.26 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.25 | |
| 1ya0_A | 497 | SMG-7 transcript variant 2; alpha-helical repeat, | 87.09 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 86.86 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 85.99 | |
| 3kae_A | 242 | CDC27, possible protein of nuclear scaffold; tetra | 85.83 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 85.41 | |
| 3tvt_B | 50 | PINS, partner of inscuteable; DLG, SRC-homology-3, | 83.09 | |
| 4b4t_O | 393 | 26S proteasome regulatory subunit RPN9; hydrolase, | 82.75 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 81.51 | |
| 3re2_A | 472 | Predicted protein; menin, multiple endocrine neopl | 80.01 |
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-37 Score=320.16 Aligned_cols=401 Identities=66% Similarity=1.065 Sum_probs=339.4
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
...|..++..|..++..|++++|+.+|+++++..|.++...+.++..+|.++...|++++|+.++++++.+.+..++.+.
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 34577888899999999999999999999999999998888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+.++..+|.++...|++++|+.++++++.+.+..++....+.++..+|.+|...|++..........++++++...+++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999866666667788899999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|+.++++++.+....++.+..+.++.++|.+|...|++++|+.++++++.+.+..++....+.++.++|.+|...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.++++++.+.+..++......++..+|.+|...|++++|+.++++++.+.+..++......++..+|.+|...|++++
T Consensus 246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 325 (406)
T 3sf4_A 246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ 325 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999988888899999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCCCchhhhhhhcccCCCCCCCCCCcchhhhccccccccc
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYANANQPSPGVRRYNRVRRSSMEQLDLI 418 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (609)
|+.++++++++.++.++......++..++.++..+|++..+...... .+...+...... .....+|.++++++++
T Consensus 326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~----~~~~~~~~l~~~-~~~~~~~~s~~~l~~~ 400 (406)
T 3sf4_A 326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSIMS----ENTEIDSSLNGV-RPKLGRRHSMENMELM 400 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC---------------------------------------
T ss_pred HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHHHH----HHHHHHHHHHhc-Chhcccccccccccce
Confidence 99999999999999999999999999999999999998765443333 222222221122 4456678899999999
Q ss_pred ccCCCc
Q psy10738 419 KLTPEN 424 (609)
Q Consensus 419 ~~~~~~ 424 (609)
+.+|++
T Consensus 401 ~~~~~k 406 (406)
T 3sf4_A 401 KLTPEK 406 (406)
T ss_dssp ------
T ss_pred ecCCCC
Confidence 988864
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-32 Score=274.91 Aligned_cols=336 Identities=71% Similarity=1.167 Sum_probs=313.2
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
..+|..++..|..++..|++++|+.+|+++++..|+++...+.++..+|.++...|++++|+.++++++.+.+..++.+.
T Consensus 2 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 81 (338)
T 3ro2_A 2 SASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 81 (338)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred chHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHH
Confidence 35688899999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+.++..+|.++...|++++|+.++++++.+.+..++....+.++..+|.+|...|++..+......+..+.++...+++
T Consensus 82 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (338)
T 3ro2_A 82 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQA 161 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999998889999999999999999977777777788889999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|+.++++++.+.+..++.+....++.++|.++...|++++|+.++++++.+.+..++......++.++|.++...|++++
T Consensus 162 A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 241 (338)
T 3ro2_A 162 AVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 241 (338)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.++++++.+.+..++......++..+|.++...|++++|+.++++++.+.+..++......++..+|.+|...|++++
T Consensus 242 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 321 (338)
T 3ro2_A 242 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQ 321 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 99999999999999888888899999999999999999999999999999999998888889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcC
Q psy10738 339 ALYFATKHLEISKQLG 354 (609)
Q Consensus 339 A~~~~~~al~l~~~~~ 354 (609)
|..++++++++.++.+
T Consensus 322 A~~~~~~a~~~~~~~~ 337 (338)
T 3ro2_A 322 AMHFAEKHLEISREVG 337 (338)
T ss_dssp HHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHHHhhc
Confidence 9999999999987765
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=280.77 Aligned_cols=338 Identities=72% Similarity=1.207 Sum_probs=315.9
Q ss_pred hhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 19 GNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 19 a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
...+..+...|..++..|++++|+.+|+++++..|+++...+.++..+|.+|...|++++|+.++++++.+++..++.+.
T Consensus 45 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 124 (411)
T 4a1s_A 45 SSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLG 124 (411)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchH
Confidence 45677788899999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+.++..+|.+|...|++++|+.++++++.+.+..++....+.++.++|.+|...|+.. ....++.+..++...+++
T Consensus 125 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~~~~~~~~~~~a~~~~~~ 201 (411)
T 4a1s_A 125 EAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL---GQRNPGKFGDDVKEALTR 201 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH---HHHSTTCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc---ccccchhhhhhhhHHHHH
Confidence 99999999999999999999999999999999999988899999999999999998721 133566677888888999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
|+.++++++.+....++.+..+.++.++|.+|...|++++|+.++++++.+.+..++......++.++|.+|...|++++
T Consensus 202 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 281 (411)
T 4a1s_A 202 AVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFED 281 (411)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHH
Confidence 99999999999999999999999999999999999999999999999999999999988889999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.++++++.+.+..++......++..+|.+|...|++++|+.++++++.+.+..++......++..+|.+|..+|++++
T Consensus 282 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 361 (411)
T 4a1s_A 282 AAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHER 361 (411)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHH
Confidence 99999999999999888888899999999999999999999999999999999998888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchH
Q psy10738 339 ALYFATKHLEISKQLGDPLGQ 359 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~ 359 (609)
|+.++++++++.++++++...
T Consensus 362 A~~~~~~al~~~~~~~~~~~~ 382 (411)
T 4a1s_A 362 ALKYAEQHLQLAXXXXXXXXX 382 (411)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhh
Confidence 999999999999877655443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-29 Score=259.57 Aligned_cols=319 Identities=31% Similarity=0.467 Sum_probs=297.9
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH----------------HHHHHhcCChHHHHHHHHHHHHhCC--cchhHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE----------------GERLCKAGDCRAGVAFFQAAIQAGT--DDLRTLSAIY 63 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~----------------g~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~a~~~ 63 (609)
++..+|.++...|++++|..++..++. |..++..|++++|+.+|++++...+ .+....+.++
T Consensus 11 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 90 (406)
T 3sf4_A 11 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS 90 (406)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHH
Confidence 456789999999999999988865544 7899999999999999999988743 3455668899
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC--------------------HHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK--------------------YDEAMVCC 123 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~ 123 (609)
..+|.++...|++++|+.++++++.+.+..++....+.++..+|.+|...|+ +++|+.++
T Consensus 91 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~ 170 (406)
T 3sf4_A 91 GNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFY 170 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 9999999999999999999999999999999888899999999999999999 99999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHH
Q psy10738 124 KRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203 (609)
Q Consensus 124 ~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 203 (609)
.+++.+.+..++....+.++.++|.+|...|+ +++|+.++++++.+.+..++....+.++
T Consensus 171 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~ 230 (406)
T 3sf4_A 171 EENLSLVTALGDRAAQGRAFGNLGNTHYLLGN--------------------FRDAVIAHEQRLLIAKEFGDKAAERRAY 230 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTB--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccCcHHHHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999888999999999999999999 9999999999999999999999999999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 283 (609)
Q Consensus 204 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 283 (609)
.++|.+|...|++++|+.++++++.+.+..++......++..+|.+|...|++++|+.++++++.+.+..++......++
T Consensus 231 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 310 (406)
T 3sf4_A 231 SNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRAC 310 (406)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence 99999999999999999999999999999999888899999999999999999999999999999999998888889999
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 284 YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 284 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
..+|.+|...|++++|+.++++++.+.+..++......++..+|.++...|+...+.
T Consensus 311 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~ 367 (406)
T 3sf4_A 311 WSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN 367 (406)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence 999999999999999999999999999999998999999999999999999875433
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-27 Score=249.10 Aligned_cols=302 Identities=32% Similarity=0.522 Sum_probs=283.9
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
..+..+..+|..++..|++++|+.++++++.+ ...+....+.++..+|.+|...|++++|+.++++++.+....++..
T Consensus 46 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 123 (411)
T 4a1s_A 46 SMCLELALEGERLCNAGDCRAGVAFFQAAIQA--GTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRL 123 (411)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh--cccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCch
Confidence 34667889999999999999999999999997 2334455678999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC--
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN-- 215 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-- 215 (609)
..+.++..+|.+|...|+ +++|+.++++++.+....++.+....++.++|.+|...|+
T Consensus 124 ~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 183 (411)
T 4a1s_A 124 GEAKSSGNLGNTLKVMGR--------------------FDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHL 183 (411)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCccc
Confidence 999999999999999999 9999999999999999999999999999999999999999
Q ss_pred ---------------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 216 ---------------FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 216 ---------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
+++|+.++++++.+.+..++......++.++|.+|...|++++|+.++++++.+.+..++.....
T Consensus 184 ~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 263 (411)
T 4a1s_A 184 GQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAER 263 (411)
T ss_dssp HHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred ccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999888899999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQV 360 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~ 360 (609)
.++..+|.+|...|++++|+.++++++.+.+..++......++..+|.+|...|++++|+.++++++.+....++.....
T Consensus 264 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 343 (411)
T 4a1s_A 264 RANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEA 343 (411)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHH
Confidence 99999999999999999999999999999999888888899999999999999999999999999999999999988999
Q ss_pred HHHHHHHHHHHHcCCCCCCCC
Q psy10738 361 TAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 361 ~a~~~la~l~~~~g~~~~al~ 381 (609)
.++..++.++...|+...|+.
T Consensus 344 ~~~~~la~~~~~~g~~~~A~~ 364 (411)
T 4a1s_A 344 RACWSLGNAHSAIGGHERALK 364 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHH
Confidence 999999999999999877654
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.4e-27 Score=237.34 Aligned_cols=300 Identities=31% Similarity=0.506 Sum_probs=281.7
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...+...|..+...|++++|+.++++++.. ...+....+.++..+|.++...|++++|+.++++++.+.+..++....
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 82 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQV--GTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 82 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHH
Confidence 346778899999999999999999999997 233445557899999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC----
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN---- 215 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~---- 215 (609)
+.++..+|.+|...|+ +++|+.++++++.+.+..++....+.++.++|.++...|+
T Consensus 83 ~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 142 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGN--------------------FDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGC 142 (338)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCccccc
Confidence 9999999999999999 9999999999999999999999999999999999999999
Q ss_pred ----------------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 216 ----------------FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 216 ----------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
+++|+.++++++.+.+..++......++.++|.++...|++++|+.++++++.+.+..++....
T Consensus 143 ~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 222 (338)
T 3ro2_A 143 PGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAE 222 (338)
T ss_dssp SSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred chhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHH
Confidence 9999999999999999999888889999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQ 359 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~ 359 (609)
..++..+|.++...|++++|+.++++++.+.+..++......++..+|.++...|++++|+.++++++.+....++....
T Consensus 223 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 302 (338)
T 3ro2_A 223 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGE 302 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHH
Confidence 99999999999999999999999999999999988888889999999999999999999999999999999999998899
Q ss_pred HHHHHHHHHHHHHcCCCCCCCC
Q psy10738 360 VTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 360 ~~a~~~la~l~~~~g~~~~al~ 381 (609)
..++..++.++...|+...|..
T Consensus 303 ~~~~~~la~~~~~~g~~~~A~~ 324 (338)
T 3ro2_A 303 GRACWSLGNAYTALGNHDQAMH 324 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHH
Confidence 9999999999999999776644
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-28 Score=254.47 Aligned_cols=312 Identities=23% Similarity=0.248 Sum_probs=207.2
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHH------------HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELA------------LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~------------~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..+|.++...|+++++..++..+ ..|..+...|++++|+..|++++...|++.. ++..+|.++
T Consensus 36 ~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~l~~~~ 111 (388)
T 1w3b_A 36 LLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFID----GYINLAAAL 111 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHH----HHHHHHHHH
Confidence 456777777788877777666433 3378888888888888888888888877643 677788888
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...|++++|+..+++++.. .|....++..+|.++...|++++|+.+|++++...+ ....++.++|.++
T Consensus 112 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 179 (388)
T 1w3b_A 112 VAAGDMEGAVQAYVSALQY------NPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQP------NFAVAWSNLGCVF 179 (388)
T ss_dssp HHHSCSSHHHHHHHHHHHH------CTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHH
Confidence 8888888888888887776 556666777777777777778778777777776644 3455777777777
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
...|+ +++|+.+|++++.+ .+....++.++|.++...|++++|+..+++++.+.
T Consensus 180 ~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 233 (388)
T 1w3b_A 180 NAQGE--------------------IWLAIHHFEKAVTL------DPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS 233 (388)
T ss_dssp HTTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC
T ss_pred HHcCC--------------------HHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 77777 77777777777765 23334566666777766777777777766666654
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+.. ..++.++|.++...|++++|+.+|++++.+.+.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 234 p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 301 (388)
T 1w3b_A 234 PNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYCNLANALKEKGSVAEAEDCYNTALRLC 301 (388)
T ss_dssp TTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC
T ss_pred cCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 322 1255666666666666666666666666544321 3456666666666666666666666666553
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
+. ...++..+|.++...|++++|+.++++++++. +....++..++.++...|+..+|+
T Consensus 302 p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~ 359 (388)
T 1w3b_A 302 PT------HADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHSNLASVLQQQGKLQEAL 359 (388)
T ss_dssp TT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHHHHHHHHHHHHTTTCCHHHH
T ss_pred cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCcHHHHHHHHHHHHHcCCHHHHH
Confidence 32 23355566666666666666666666665432 334555666666666666655443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=5.3e-28 Score=252.01 Aligned_cols=312 Identities=21% Similarity=0.198 Sum_probs=273.1
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHH------------HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELAL------------EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~------------~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..+|..+.+.|++++|..++..+. .|.++...|++++|+.+++++++..|.+. .++..+|.++
T Consensus 2 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~----~~~~~lg~~~ 77 (388)
T 1w3b_A 2 PMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----EAYSNLGNVY 77 (388)
T ss_dssp CCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHH
T ss_pred hhhHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCch----HHHHHHHHHH
Confidence 3457888999999999988775543 48899999999999999999999999874 4899999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
...|++++|+.+|++++.+ .|....++..+|.++...|++++|+..|++++.+.+ ....++..+|.++
T Consensus 78 ~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~ 145 (388)
T 1w3b_A 78 KERGQLQEAIEHYRHALRL------KPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP------DLYCVRSDLGNLL 145 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT------TCTHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHc------CcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHH
Confidence 9999999999999999998 677788999999999999999999999999998765 4456888999999
Q ss_pred HHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 151 HAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 151 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
...|+ +++|+.+|++++.. .+....++.++|.++...|++++|+.+|++++.+.
T Consensus 146 ~~~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 199 (388)
T 1w3b_A 146 KALGR--------------------LEEAKACYLKAIET------QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD 199 (388)
T ss_dssp HTTSC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC
T ss_pred HHccC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 99999 99999999999886 34456789999999999999999999999999876
Q ss_pred HHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 231 REFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 231 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
+.. ..++.++|.++...|++++|+..+++++.+.+.. ..++..+|.++...|++++|+.++++++.+.
T Consensus 200 p~~------~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 267 (388)
T 1w3b_A 200 PNF------LDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQ 267 (388)
T ss_dssp TTC------HHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred CCc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 543 2388999999999999999999999999886643 6788999999999999999999999999875
Q ss_pred HHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 311 QQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 311 ~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
+. ...++..+|.++...|++++|+.++++++++. +....++..++.++...|+...|+
T Consensus 268 p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 268 PH------FPDAYCNLANALKEKGSVAEAEDCYNTALRLC------PTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp SS------CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred CC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC------cccHHHHHHHHHHHHHcCCHHHHH
Confidence 43 34578999999999999999999999999875 455778899999999999876554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.9e-26 Score=236.37 Aligned_cols=270 Identities=14% Similarity=0.104 Sum_probs=248.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND-KLSE 139 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~ 139 (609)
..++.+|.++...|++++|+.++++++.+++..++.+..+.++..+|.+|...|++++|+.++.+++++.+..++ ....
T Consensus 104 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 183 (383)
T 3ulq_A 104 YFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRL 183 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHH
Confidence 356679999999999999999999999999999999999999999999999999999999999999999999887 7788
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
+.++.++|.+|...|+ +++|+.++++++.+.+..++....+.++.++|.+|..+|++++|
T Consensus 184 ~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A 243 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQ--------------------YEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDA 243 (383)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999999999999999 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
+.++++++.+.+...+......++.++|.+|...|++++|+.++++++.+.+..+++..... +..+|.+|...|++
T Consensus 244 ~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~l~~~~~~~~~~--- 319 (383)
T 3ulq_A 244 IPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEFLKSLYLSGPDE--- 319 (383)
T ss_dssp HHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHHHHHHHTSSCCH---
T ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHHHHHHHhCCCcH---
Confidence 99999999999998875566889999999999999999999999999999999888766665 67799999999996
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
..+.+++.+..+.+.......++..+|.+|...|++++|..++++++++.+++..
T Consensus 320 -~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~i~~ 374 (383)
T 3ulq_A 320 -EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQVRQLIQG 374 (383)
T ss_dssp -HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTSCSS
T ss_pred -HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhc
Confidence 5666677777777777778889999999999999999999999999999987765
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-25 Score=229.94 Aligned_cols=331 Identities=12% Similarity=0.013 Sum_probs=275.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC---cchhHHHHHHHHH--HHHHHHhCCHHHHH-----------HHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGT---DDLRTLSAIYSQL--GNAYFYLGDYQKAM-----------QYHKQD 86 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~a~~~~~l--g~~~~~~g~~~~A~-----------~~~~~a 86 (609)
-.++.....+...+++++|..+++++.+.-+ .+.... .|+.+ .......+++..+. ..+++.
T Consensus 13 ~~~l~~w~~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~--~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i 90 (383)
T 3ulq_A 13 GEKINEWYMYIRRFSIPDAEYLRREIKQELDQMEEDQDLH--LYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEI 90 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSCCCHHHH--HHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhhccchHHH--HHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHH
Confidence 4455567788899999999999999876432 233322 22322 22233344444444 444443
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCC
Q psy10738 87 LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPG 166 (609)
Q Consensus 87 l~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~ 166 (609)
-.. ....+.......++.+|.++...|++++|+.++++++.+.+..++....+.+++.+|.+|...|+
T Consensus 91 ~~~-~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~----------- 158 (383)
T 3ulq_A 91 DKK-QARLTGLLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQ----------- 158 (383)
T ss_dssp HHH-THHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC-----------
T ss_pred Hhc-CCCchhHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCC-----------
Confidence 221 11111222344667799999999999999999999999999888888899999999999999999
Q ss_pred CCchHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHH
Q psy10738 167 EYPEEVKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSN 245 (609)
Q Consensus 167 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 245 (609)
+++|+.++.+++++.+..++ .+..+.++.++|.+|..+|++++|+.++++++++.+..++....+.++.+
T Consensus 159 ---------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 229 (383)
T 3ulq_A 159 ---------TYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYN 229 (383)
T ss_dssp ---------HHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 99999999999999999887 78889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHH
Q psy10738 246 LGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWS 325 (609)
Q Consensus 246 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 325 (609)
+|.+|..+|++++|+.++++++.+.+..++....+.++..+|.+|...|++++|+.++++++.+.+..+++..... +..
T Consensus 230 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~-~~~ 308 (383)
T 3ulq_A 230 IGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSE-FEF 308 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH-HHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH-HHH
Confidence 9999999999999999999999999988875667999999999999999999999999999999999888766655 677
Q ss_pred HHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 326 LGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 326 La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+|.+|...|++ ..+.+++.+.++.+..+....++..+|.++...|++..|+.
T Consensus 309 l~~~~~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 360 (383)
T 3ulq_A 309 LKSLYLSGPDE----EAIQGFFDFLESKMLYADLEDFAIDVAKYYHERKNFQKASA 360 (383)
T ss_dssp HHHHHTSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhCCCcH----HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99999999997 56777777888888888889999999999999999887764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.95 E-value=9.8e-26 Score=230.72 Aligned_cols=317 Identities=14% Similarity=0.097 Sum_probs=253.1
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
++..+|.++...|++++|..++..++. |.++...|++++|+..|+++++..|.+. .++..+|.+
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~ 80 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT----AARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc----hHHHHHHHH
Confidence 356788999999999999988876554 8889999999999999999999988774 478899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChh---hHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKL---GEAKSSGNL------------GNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~---~~~~a~~~l------------g~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
+...|++++|+.++++++.. .+ ....++..+ |.++...|++++|+.++++++...+
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 151 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKS------NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCV--- 151 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred HHHcCChHHHHHHHHHHHhc------CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---
Confidence 99999999999999998876 34 444455444 7889999999999999999988765
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
....++..+|.++...|+ +++|+.++++++.. .+....++..+|.++...|
T Consensus 152 ---~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 152 ---WDAELRELRAECFIKEGE--------------------PRKAISDLKAASKL------KSDNTEAFYKISTLYYQLG 202 (359)
T ss_dssp ---TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHTT------CSCCHHHHHHHHHHHHHHT
T ss_pred ---CchHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcC
Confidence 345688899999999999 99999999988876 2334568889999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAA------ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
++++|+.+++++++..+....... .......+|.++...|++++|+.++++++...+. +......++..+|.
T Consensus 203 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH
Confidence 999999999999877554322111 0122446688899999999999999999887643 34444567788999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTD 368 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~ 368 (609)
++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++++. +....++..++.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~ 348 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN------ENDQQIREGLEK 348 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC------TTCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------CCChHHHHHHHH
Confidence 999999999999999999887433 35588899999999999999999999998865 455667777777
Q ss_pred HHHHcC
Q psy10738 369 LRKALG 374 (609)
Q Consensus 369 l~~~~g 374 (609)
++..++
T Consensus 349 ~~~~~~ 354 (359)
T 3ieg_A 349 AQRLLK 354 (359)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 776654
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-24 Score=225.54 Aligned_cols=270 Identities=16% Similarity=0.071 Sum_probs=241.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND-KL 137 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~ 137 (609)
....++.+|..++..|++++|+.++++++.+....++.+..+.++.++|.+|...|++++|+.++++++++.+..++ ..
T Consensus 100 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~ 179 (378)
T 3q15_A 100 KYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSI 179 (378)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHH
T ss_pred HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchh
Confidence 34467889999999999999999999999999999999999999999999999999999999999999999998876 55
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
..+.++.++|.+|...|+ +++|+.++++++.+.+..++....+.++.++|.+|..+|+++
T Consensus 180 ~~~~~~~~lg~~y~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~ 239 (378)
T 3q15_A 180 RTIQSLFVIAGNYDDFKH--------------------YDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQ 239 (378)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH
T ss_pred hHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHH
Confidence 789999999999999999 999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+|+.++++++.+.+...++.. ..++.++|.++...|++++|+.++++++.+.+..+++.... .+..++.+|...++.
T Consensus 240 ~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ly~~~~~~- 316 (378)
T 3q15_A 240 MAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQAVYKETVDE- 316 (378)
T ss_dssp HHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHHHHSSSCCH-
T ss_pred HHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHhCCCcH-
Confidence 999999999999998877766 88999999999999999999999999999988776655444 467888899888884
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcC
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLG 354 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~ 354 (609)
..+.+++....+.+.......++..+|.+|...|++++|..+|++++++.+++.
T Consensus 317 ---~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~~~~~~~ 370 (378)
T 3q15_A 317 ---RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLKAQEDIL 370 (378)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 344455555555556666778889999999999999999999999999887653
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.9e-26 Score=228.94 Aligned_cols=292 Identities=18% Similarity=0.192 Sum_probs=252.6
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+...|..++..|++++|+.+|+++++..|.+.. ++..++.++...|++++|+.++++++.. .+....++.
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~ 94 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHAS----CLPVHIGTLVELNKANELFYLSHKLVDL------YPSNPVSWF 94 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTT----THHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChh----hHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHH
Confidence 445689999999999999999999999998755 6778889999999999999999999998 677788999
Q ss_pred HHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 105 NLGNTLKVMG-KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 105 ~lg~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
.+|.++...| ++++|+.++++++.+.+ ....++..+|.++...|+ +++|+.++
T Consensus 95 ~l~~~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~ 148 (330)
T 3hym_B 95 AVGCYYLMVGHKNEHARRYLSKATTLEK------TYGPAWIAYGHSFAVESE--------------------HDQAMAAY 148 (330)
T ss_dssp HHHHHHHHSCSCHHHHHHHHHHHHTTCT------TCTHHHHHHHHHHHHHTC--------------------HHHHHHHH
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHccC--------------------HHHHHHHH
Confidence 9999999999 99999999999998765 345679999999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
++++.+.+ ....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++
T Consensus 149 ~~a~~~~~------~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~ 216 (330)
T 3hym_B 149 FTAAQLMK------GCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPED------PFVMHEVGVVAFQNGEWKTAEKWF 216 (330)
T ss_dssp HHHHHHTT------TCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTC------HHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHhcc------ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCC------hHHHHHHHHHHHHcccHHHHHHHH
Confidence 99998743 234567789999999999999999999999876543 348899999999999999999999
Q ss_pred HHHHHHHHHcCCc---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 264 KRTLVLAQDLGDR---AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 264 ~~al~~~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
++++.+.+..++. .....++..+|.++...|++++|+.++++++.+.+. ...++..+|.++...|++++|.
T Consensus 217 ~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~------~~~~~~~la~~~~~~g~~~~A~ 290 (330)
T 3hym_B 217 LDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ------NASTYSAIGYIHSLMGNFENAV 290 (330)
T ss_dssp HHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CSHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCcc------chHHHHHHHHHHHHhccHHHHH
Confidence 9999998665433 223568899999999999999999999999988654 3458999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHH-HHcCCC
Q psy10738 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLR-KALGMS 376 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~~~~~~a~~~la~l~-~~~g~~ 376 (609)
.++++++++. +....++..++.++ ...|+.
T Consensus 291 ~~~~~al~~~------p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 291 DYFHTALGLR------RDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHTTTTTC------SCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHccC------CCchHHHHHHHHHHHHHhCch
Confidence 9999998764 56678899999988 556653
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.94 E-value=3.6e-25 Score=240.33 Aligned_cols=324 Identities=15% Similarity=0.105 Sum_probs=273.5
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
++..+|..+...|++++|+.++..++. |.++...|++++|+..|+++++.+|++.. ++..+|.+
T Consensus 27 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~ 102 (537)
T 3fp2_A 27 QLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSK----ALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHH----HHHHHHHH
Confidence 467889999999999999999987665 89999999999999999999999998854 88999999
Q ss_pred HHHhCCHHHHHHHHHHHH--------------------------------------------------------------
Q psy10738 70 YFYLGDYQKAMQYHKQDL-------------------------------------------------------------- 87 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al-------------------------------------------------------------- 87 (609)
+...|++++|+..++ ++
T Consensus 103 ~~~~g~~~~A~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 103 NESLGNFTDAMFDLS-VLSLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHTCHHHHHHHHH-HHC-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHcCCHHHHHHHHH-HHhcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 999999999998773 33
Q ss_pred -----------------------------------------HHHHHc----CC----hhhHHHHHHHHHHHHHHcCCHHH
Q psy10738 88 -----------------------------------------TLARNM----ED----KLGEAKSSGNLGNTLKVMGKYDE 118 (609)
Q Consensus 88 -----------------------------------------~~~~~~----~d----~~~~~~a~~~lg~~~~~~g~~~~ 118 (609)
..+.+. .+ ....+.++..+|.++...|++++
T Consensus 182 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 261 (537)
T 3fp2_A 182 SVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLD 261 (537)
T ss_dssp TSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHH
Confidence 111110 00 11125578889999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 119 AMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 119 A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
|+.++++++.+.+ . ..++..+|.++...|+ +++|+.++++++... +.
T Consensus 262 A~~~~~~~~~~~~------~-~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~ 308 (537)
T 3fp2_A 262 AQVLLQESINLHP------T-PNSYIFLALTLADKEN--------------------SQEFFKFFQKAVDLN------PE 308 (537)
T ss_dssp HHHHHHHHHHHCC------C-HHHHHHHHHHTCCSSC--------------------CHHHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHhcCC------C-chHHHHHHHHHHHhcC--------------------HHHHHHHHHHHhccC------CC
Confidence 9999999998754 2 5788899999999999 999999999998873 33
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
...++..+|.++...|++++|+.++++++.+.+.... ++..+|.++...|++++|+.++++++...+..
T Consensus 309 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~----- 377 (537)
T 3fp2_A 309 YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVY------PYIQLACLLYKQGKFTESEAFFNETKLKFPTL----- 377 (537)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC-----
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC-----
Confidence 4568999999999999999999999999998665443 88999999999999999999999999886543
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc----------CChHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR----------GNHEKALYFATKHLE 348 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~----------g~~~~A~~~~~~al~ 348 (609)
..++..+|.++...|++++|+.++++++.+.+...........+..+|.++... |++++|+.+++++++
T Consensus 378 -~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 456 (537)
T 3fp2_A 378 -PEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACE 456 (537)
T ss_dssp -THHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHH
T ss_pred -hHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999988766555555678889999999 999999999999998
Q ss_pred HHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 349 ISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 349 l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+. +....++..+|.++...|+...|+.
T Consensus 457 ~~------p~~~~~~~~l~~~~~~~g~~~~A~~ 483 (537)
T 3fp2_A 457 LD------PRSEQAKIGLAQLKLQMEKIDEAIE 483 (537)
T ss_dssp HC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hC------CCCHHHHHHHHHHHHHhccHHHHHH
Confidence 75 4556889999999999999877654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-25 Score=235.92 Aligned_cols=318 Identities=14% Similarity=0.096 Sum_probs=256.9
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
++..+|..+...|++++|..++..++. |.++...|++++|+..|+++++..|.+. .++..+|.+
T Consensus 28 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~ 103 (450)
T 2y4t_A 28 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT----AARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH----HHHHHHHHH
Confidence 356788999999999999888876543 8889999999999999999999998874 478899999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHH---HH------------HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEA---KS------------SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~---~a------------~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
|...|++++|+.++++++.. .+... .+ +..+|.++...|++++|+.++++++.+.+
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~--- 174 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKS------NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV--- 174 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---
T ss_pred HHHcCCHHHHHHHHHHHHhc------CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---
Confidence 99999999999999998875 22222 33 44557789999999999999999988755
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
....++..+|.+|...|+ +++|+.++++++... +....++..+|.+|...|
T Consensus 175 ---~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g 225 (450)
T 2y4t_A 175 ---WDAELRELRAECFIKEGE--------------------PRKAISDLKAASKLK------NDNTEAFYKISTLYYQLG 225 (450)
T ss_dssp ---TCHHHHHHHHHHHHHTTC--------------------GGGGHHHHHHHHHHH------CSCHHHHHHHHHHHHHTT
T ss_pred ---CChHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcC
Confidence 445688999999999999 999999999998873 333578999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAA------ERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
++++|+.++++++.+.+....... .......+|.++...|++++|+.+|++++.+.+. +......++..+|.
T Consensus 226 ~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l~~ 303 (450)
T 2y4t_A 226 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERICH 303 (450)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHHHH
Confidence 999999999999876543221110 0112345599999999999999999999986543 33344668899999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHH
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTD 368 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~ 368 (609)
++...|++++|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++. +....++..++.
T Consensus 304 ~~~~~g~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~~l~~ 371 (450)
T 2y4t_A 304 CFSKDEKPVEAIRVCSEVLQMEPD------NVNALKDRAEAYLIEEMYDEAIQDYETAQEHN------ENDQQIREGLEK 371 (450)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS------SSCHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhCcc------cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------cchHHHHHHHHH
Confidence 999999999999999999987543 34689999999999999999999999999864 455778888887
Q ss_pred HHHHcCC
Q psy10738 369 LRKALGM 375 (609)
Q Consensus 369 l~~~~g~ 375 (609)
+....+.
T Consensus 372 ~~~~~~~ 378 (450)
T 2y4t_A 372 AQRLLKQ 378 (450)
T ss_dssp HHHHHHH
T ss_pred HHHHhhc
Confidence 7766654
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-23 Score=213.55 Aligned_cols=325 Identities=13% Similarity=0.001 Sum_probs=271.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDD-LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
......|..+...|++++|+.++++++...|.+ +.....++..+|.++...|++++|+.++++++.+.+..++....+.
T Consensus 15 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 94 (373)
T 1hz4_A 15 EFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALW 94 (373)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 345667999999999999999999999987644 3446678899999999999999999999999999999988888889
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK--LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~--~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
++.++|.++...|++++|+.++++++.+.+..++. .....++.++|.++...|+ +++|
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A 154 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--------------------LDEA 154 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--------------------HHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcC--------------------HHHH
Confidence 99999999999999999999999999999987765 5678889999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHhCCHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK-AAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~ 258 (609)
..++++++.+.+..++.. ...++.++|.++...|++++|..++++++.+.+..+.. .........++.++...|++++
T Consensus 155 ~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 233 (373)
T 1hz4_A 155 EASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAA 233 (373)
T ss_dssp HHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHH
Confidence 999999999887665544 56789999999999999999999999999987665443 2222233355667889999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|..++.+++...+. ........+..+|.++...|++++|...+++++...+..+.......++..+|.++...|++++
T Consensus 234 A~~~~~~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 311 (373)
T 1hz4_A 234 AANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSD 311 (373)
T ss_dssp HHHHHHHSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHhCCCCCCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHH
Confidence 99999998764321 1122233567899999999999999999999999998877766677799999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Q psy10738 339 ALYFATKHLEISKQLGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~ 370 (609)
|..++++++.+....+........-..+..++
T Consensus 312 A~~~l~~al~~~~~~g~~~~~~~~g~~~~~ll 343 (373)
T 1hz4_A 312 AQRVLLDALKLANRTGFISHFVIEGEAMAQQL 343 (373)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHTTHHHHHHHH
T ss_pred HHHHHHHHHHHhccccHHHHHHHccHHHHHHH
Confidence 99999999999988776654443333344443
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.2e-24 Score=220.71 Aligned_cols=308 Identities=15% Similarity=0.114 Sum_probs=254.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..++..|++++|+.+|+++++..|.++ .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 74 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPDNY----IAYYRRATVFLAMGKSKAALPDLTKVIAL------KMDFTAAR 74 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCcchHH
Confidence 456679999999999999999999999999875 48899999999999999999999999998 66677899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH---HcCCcH------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR---QLNDKL------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~---~~~d~~------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
..+|.++...|++++|+.++++++.+.+ ...... .....+..+|.++...|+
T Consensus 75 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~------------------- 135 (359)
T 3ieg_A 75 LQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGAD------------------- 135 (359)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------------------
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccC-------------------
Confidence 9999999999999999999999987644 211100 011223445899999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+++|+.++++++... +....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|
T Consensus 136 -~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~ 202 (359)
T 3ieg_A 136 -YTAAITFLDKILEVC------VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDN------TEAFYKISTLYYQLG 202 (359)
T ss_dssp -HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCC------HHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcC
Confidence 999999999998873 3345789999999999999999999999998874432 248899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAV------EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~ 328 (609)
++++|+.++++++...+....... .......+|.++...|++++|+.++++++...+. +......++..+|.
T Consensus 203 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~~~~la~ 280 (359)
T 3ieg_A 203 DHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--VAEYTVRSKERICH 280 (359)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHH
Confidence 999999999999987654321110 1112346699999999999999999999987654 33445567889999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 329 AHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 329 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
++...|++++|+.++++++++. +....++..+|.++...|+...|+.
T Consensus 281 ~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~~~~~g~~~~A~~ 327 (359)
T 3ieg_A 281 CFSKDEKPVEAIRICSEVLQME------PDNVNALKDRAEAYLIEEMYDEAIQ 327 (359)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999999999874 4557899999999999999877654
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=4.6e-25 Score=227.37 Aligned_cols=282 Identities=17% Similarity=0.158 Sum_probs=236.8
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.+ .+....++.
T Consensus 67 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~ 136 (368)
T 1fch_A 67 PFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHM----EAWQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALM 136 (368)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHCcCHHHHHHHHHHHHhc------CCCCHHHHH
Confidence 55679999999999999999999999999874 48899999999999999999999999998 667788999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH----------HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS----------EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~----------~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
.+|.++...|++++|+.++++++.+.+....... ....+..++.++ ..|+
T Consensus 137 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~------------------- 196 (368)
T 1fch_A 137 ALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSL------------------- 196 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHH-HHHH-------------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hccc-------------------
Confidence 9999999999999999999999987654322111 112223567776 8888
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+++|+.++++++.+.+... ...++.++|.++...|++++|+.++++++.+.+.. ..++.++|.++...|
T Consensus 197 -~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g 265 (368)
T 1fch_A 197 -FLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGN 265 (368)
T ss_dssp -HHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHHHHHHHHHHHHcC
Confidence 9999999999998732211 46789999999999999999999999999875433 248899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh-----HHHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG-----EGRACWSLGNA 329 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----~~~~~~~La~~ 329 (609)
++++|+.+|++++.+.+.. ..++..+|.+|...|++++|+.++++++.+.+...++.. ...++..+|.+
T Consensus 266 ~~~~A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 266 QSEEAVAAYRRALELQPGY------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 9999999999999886542 678999999999999999999999999999887633322 26789999999
Q ss_pred HHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 330 HAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
|..+|++++|..+++++++.+++.
T Consensus 340 ~~~~g~~~~A~~~~~~~l~~~~~~ 363 (368)
T 1fch_A 340 LSMLGQSDAYGAADARDLSTLLTM 363 (368)
T ss_dssp HHHHTCGGGHHHHHTTCHHHHHHH
T ss_pred HHHhCChHhHHHhHHHHHHHHHHh
Confidence 999999999999999999887643
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-24 Score=238.43 Aligned_cols=323 Identities=14% Similarity=0.100 Sum_probs=240.7
Q ss_pred hhhhhhHhhhcCCCcchhHHHH----------------------------HHHHHHHHHhcCChHHHHHHHHHHHHhCCc
Q psy10738 3 VGNISSSDSQSGGADGGNMCLE----------------------------LALEGERLCKAGDCRAGVAFFQAAIQAGTD 54 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~----------------------------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~ 54 (609)
+..++.++.+.|++++|...+. +...|..+...|++++|+..|+++++.+|.
T Consensus 153 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 232 (597)
T 2xpi_A 153 RYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK 232 (597)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch
Confidence 4567777777777777666554 445577888888888888888888887775
Q ss_pred chhH-------------------------------------------------------------------HHHHHHHHH
Q psy10738 55 DLRT-------------------------------------------------------------------LSAIYSQLG 67 (609)
Q Consensus 55 ~~~~-------------------------------------------------------------------~a~~~~~lg 67 (609)
+... ...++..+|
T Consensus 233 ~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~ 312 (597)
T 2xpi_A 233 CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKA 312 (597)
T ss_dssp CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHH
T ss_pred hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHH
Confidence 4331 122344455
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 68 NAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147 (609)
Q Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg 147 (609)
.+|...|++++|+.+|++++.. .+....++..++.++...|++++|+..+++++...+ ....++..+|
T Consensus 313 ~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~ 380 (597)
T 2xpi_A 313 DTLFVRSRFIDVLAITTKILEI------DPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHP------EKAVTWLAVG 380 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH------CTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TSHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCc------ccHHHHHHHH
Confidence 5555555555555555555544 233334455555555555555555555555543322 3456788899
Q ss_pred HHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 148 NVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
.+|...|+ +++|+.+|++++++ .+....++..+|.+|...|++++|+.+|++++
T Consensus 381 ~~~~~~g~--------------------~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 434 (597)
T 2xpi_A 381 IYYLCVNK--------------------ISEARRYFSKSSTM------DPQFGPAWIGFAHSFAIEGEHDQAISAYTTAA 434 (597)
T ss_dssp HHHHHTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcc--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99999999 99999999998876 23345688899999999999999999999998
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
...+... .++..+|.+|...|++++|+.+|++++...+. ...++..+|.+|...|++++|+.+|++++
T Consensus 435 ~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 502 (597)
T 2xpi_A 435 RLFQGTH------LPYLFLGMQHMQLGNILLANEYLQSSYALFQY------DPLLLNELGVVAFNKSDMQTAINHFQNAL 502 (597)
T ss_dssp HTTTTCS------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HhCccch------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 7755433 37889999999999999999999999876543 25678899999999999999999999999
Q ss_pred HHHHHhcchhh-HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 308 IIAQQLMDRVG-EGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 308 ~~~~~~~~~~~-~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
.+.++.+.... ...++..+|.+|...|++++|+.++++++++. +....++..++.++...|+.++|..
T Consensus 503 ~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~g~~~~A~~ 571 (597)
T 2xpi_A 503 LLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS------TNDANVHTAIALVYLHKKIPGLAIT 571 (597)
T ss_dssp HHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS------SCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHhCCHHHHHH
Confidence 98876544333 37799999999999999999999999999875 4567899999999999999776644
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.93 E-value=7.2e-26 Score=233.45 Aligned_cols=302 Identities=16% Similarity=0.089 Sum_probs=240.8
Q ss_pred HHHHhcCChHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVA-FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 30 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
..+...|+|++|+. .|++++...|.++......++.+|.++...|++++|+.++++++.. .+....++..+|.
T Consensus 33 ~~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~l~~ 106 (368)
T 1fch_A 33 EAHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQYLGT 106 (368)
T ss_dssp -------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHH
T ss_pred hhhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence 36778899999999 9999999988776544567889999999999999999999999987 6777889999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
++...|++++|+.++++++.+.+ ....++..+|.+|...|+ +++|+.++++++.
T Consensus 107 ~~~~~g~~~~A~~~~~~al~~~~------~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~ 160 (368)
T 1fch_A 107 TQAENEQELLAISALRRCLELKP------DNQTALMALAVSFTNESL--------------------QRQACEILRDWLR 160 (368)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHH
T ss_pred HHHHCcCHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHH
Confidence 99999999999999999998865 456789999999999999 9999999999988
Q ss_pred HHHHhCChH----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 189 LMKEINDTA----------AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 189 ~~~~~~~~~----------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
+.+...... .....+..+|.++ ..|++++|+.++++++.+.+... ...++..+|.++...|++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~p~~~----~~~~~~~l~~~~~~~g~~~~ 235 (368)
T 1fch_A 161 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLL-SDSLFLEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDK 235 (368)
T ss_dssp TSTTTGGGCC---------------CTTHHHH-HHHHHHHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHH
T ss_pred hCcCcHHHHHHHHHHhhhhcccHHHHHHHHHh-hcccHHHHHHHHHHHHHhCcCcc----cHHHHHHHHHHHHHcCCHHH
Confidence 643321110 0111223567776 89999999999999998866532 23488899999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH
Q psy10738 259 ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~ 338 (609)
|+.++++++.+.+.. ..++..+|.++...|++++|+.++++++.+.+. ...++..+|.+|...|++++
T Consensus 236 A~~~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~ 303 (368)
T 1fch_A 236 AVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSRYNLGISCINLGAHRE 303 (368)
T ss_dssp HHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHhCcCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------cHHHHHHHHHHHHHCCCHHH
Confidence 999999999886543 678999999999999999999999999987543 35689999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCc-----hHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 339 ALYFATKHLEISKQLGDPL-----GQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 339 A~~~~~~al~l~~~~~~~~-----~~~~a~~~la~l~~~~g~~~~al 380 (609)
|+.++++++.+.....++. ....++..++.++..+|+.+.+.
T Consensus 304 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 304 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 9999999999987663332 23789999999999999977653
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=6.2e-25 Score=226.65 Aligned_cols=280 Identities=18% Similarity=0.152 Sum_probs=230.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..++..|++++|+.+|+++++..|.+. .++..+|.+|...|++++|+.+|++++.+ .+....++.
T Consensus 68 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~ 137 (365)
T 4eqf_A 68 AFEEGLKRLKEGDLPVTILFMEAAILQDPGDA----EAWQFLGITQAENENEQAAIVALQRCLEL------QPNNLKALM 137 (365)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCCHHHHH
Confidence 55679999999999999999999999999874 48999999999999999999999999998 677789999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH----HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL----SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.+|.+|...|++++|+.++++++.+.+...... .....+..+|.++...|+ +++|+
T Consensus 138 ~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~ 197 (365)
T 4eqf_A 138 ALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSV--------------------LEGVK 197 (365)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHH--------------------HHHHH
T ss_pred HHHHHHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhh--------------------HHHHH
Confidence 999999999999999999999999887543322 124556677999999999 99999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.++++++.+.+... ...++.++|.+|...|++++|+.++++++++.+.. ..++.++|.+|...|++++|+
T Consensus 198 ~~~~~al~~~p~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~ 267 (365)
T 4eqf_A 198 ELYLEAAHQNGDMI----DPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED------YSLWNRLGATLANGDRSEEAV 267 (365)
T ss_dssp HHHHHHHHHSCSSC----CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHhCcCcc----CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHH
Confidence 99999998732211 35688999999999999999999999999886543 338999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch------hhHHHHHHHHHHHHHHcC
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR------VGEGRACWSLGNAHAARG 334 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~La~~~~~~g 334 (609)
.+|++++.+.+.. ..++..+|.+|...|++++|+.+|++++.+.+..... .....++..++.++..+|
T Consensus 268 ~~~~~al~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 341 (365)
T 4eqf_A 268 EAYTRALEIQPGF------IRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMD 341 (365)
T ss_dssp HHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCCCc------hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcC
Confidence 9999999986653 7789999999999999999999999999998875442 223568999999999999
Q ss_pred ChHHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEIS 350 (609)
Q Consensus 335 ~~~~A~~~~~~al~l~ 350 (609)
+.+.|.....+.+...
T Consensus 342 ~~~~a~~~~~~~l~~~ 357 (365)
T 4eqf_A 342 QPELFQAANLGDLDVL 357 (365)
T ss_dssp CHHHHHHHHTTCCGGG
T ss_pred cHHHHHHHHHhhHHHH
Confidence 9999998887766554
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.93 E-value=2e-23 Score=216.78 Aligned_cols=329 Identities=11% Similarity=-0.007 Sum_probs=264.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCC---cchhHHHHHHHHHHHH--HHHhCCHHHHH---------HHHHHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGT---DDLRTLSAIYSQLGNA--YFYLGDYQKAM---------QYHKQDLTL 89 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~a~~~~~lg~~--~~~~g~~~~A~---------~~~~~al~~ 89 (609)
.++..-..+...+++++|..+++++....+ .+.... +|+.+-.. ....+.+..+. ..++..-..
T Consensus 14 ~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~--~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~ 91 (378)
T 3q15_A 14 VKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLL--IYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLETIETP 91 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHH--HHHHHHHHHHHHHHHTCCC--------CHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHH--HHHHHHHHHHHHHHhhcCcccccccccchHHHHHHHhcc
Confidence 344445556889999999999999876432 233322 33333222 22223322222 333332111
Q ss_pred HHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
....+.......++..|..+...|++++|+.+|++++.+.+..++....+.+++++|.+|...|+
T Consensus 92 -~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~-------------- 156 (378)
T 3q15_A 92 -QKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQ-------------- 156 (378)
T ss_dssp -GHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred -CCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCC--------------
Confidence 11112333455788899999999999999999999999999888888999999999999999999
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGN 248 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 248 (609)
++.|+.++++++.+.+..++ ....+.++.++|.+|...|++++|+.++++++++.+..++....+.++.++|.
T Consensus 157 ------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~ 230 (378)
T 3q15_A 157 ------THVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIAN 230 (378)
T ss_dssp ------HHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred ------cHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 99999999999999998776 66789999999999999999999999999999999999998889999999999
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~ 328 (609)
+|..+|++++|+.++++++.+....+++.. +.++..+|.+|...|++++|+.++++++.+.+..+++.... .+..++.
T Consensus 231 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~l~~ 308 (378)
T 3q15_A 231 SYDRSGDDQMAVEHFQKAAKVSREKVPDLL-PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKE-LFLFLQA 308 (378)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHHHHCGGGH-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHH-HHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Confidence 999999999999999999999988877766 88999999999999999999999999999988877755444 4678889
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 329 AHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 329 ~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
+|...|+. ..+.+++...++.+..+....+...+|.++...|+...|..
T Consensus 309 ly~~~~~~----~~~~~al~~~~~~~~~~~~~~~~~~la~~y~~~g~~~~A~~ 357 (378)
T 3q15_A 309 VYKETVDE----RKIHDLLSYFEKKNLHAYIEACARSAAAVFESSCHFEQAAA 357 (378)
T ss_dssp HHSSSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhCCCcH----HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 99988885 45556666666666777788889999999999999887654
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.5e-24 Score=228.45 Aligned_cols=310 Identities=15% Similarity=0.119 Sum_probs=254.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..++..|++++|+.+|+++++..|.+ ..++..+|.++...|++++|+.+++++++. .+....
T Consensus 26 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 95 (450)
T 2y4t_A 26 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDN----YIAYYRRATVFLAMGKSKAALPDLTKVIQL------KMDFTA 95 (450)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCcHH
Confidence 3455667999999999999999999999999987 448899999999999999999999999998 677789
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC---CcH------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN---DKL------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~---d~~------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
++..+|.+|...|++++|+.+|++++.+.+... ... .....+..+|.++...|+
T Consensus 96 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----------------- 158 (450)
T 2y4t_A 96 ARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGD----------------- 158 (450)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC-----------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCC-----------------
Confidence 999999999999999999999999987543111 000 011235566888999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
+++|+.++++++.. .+....++..+|.+|...|++++|+.++++++...+.. ..++..+|.+|..
T Consensus 159 ---~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~ 223 (450)
T 2y4t_A 159 ---YTAAIAFLDKILEV------CVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDN------TEAFYKISTLYYQ 223 (450)
T ss_dssp ---HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSC------HHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH
Confidence 99999999999886 33345789999999999999999999999999875433 2488999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCCcHH------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHH
Q psy10738 253 LGEYQAASEHYKRTLVLAQDLGDRAV------EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL 326 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~L 326 (609)
.|++++|+.++++++.+.+....... .......+|.++...|++++|+.+|++++.+.+. +......++..+
T Consensus 224 ~g~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~--~~~~~~~~~~~l 301 (450)
T 2y4t_A 224 LGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS--IAEYTVRSKERI 301 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS--SHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc--chHHHHHHHHHH
Confidence 99999999999999976554211000 0112244599999999999999999999986543 333346689999
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 327 GNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
|.++...|++++|+.++++++.+. +....++..+|.++...|+...|..
T Consensus 302 ~~~~~~~g~~~~A~~~~~~a~~~~------p~~~~~~~~l~~~~~~~~~~~~A~~ 350 (450)
T 2y4t_A 302 CHCFSKDEKPVEAIRVCSEVLQME------PDNVNALKDRAEAYLIEEMYDEAIQ 350 (450)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC------cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 999999999999999999999874 4567899999999999999776644
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.5e-24 Score=238.94 Aligned_cols=307 Identities=17% Similarity=0.134 Sum_probs=261.9
Q ss_pred hhhhHhhhcCCCcchhHHHH-----------HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh
Q psy10738 5 NISSSDSQSGGADGGNMCLE-----------LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL 73 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~-----------l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~ 73 (609)
.++..+.+.|++++|..++. +...|..+...|++++|+.+|+++++..|.+.. ++..++.++...
T Consensus 277 ~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 352 (597)
T 2xpi_A 277 LKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLD----VYPLHLASLHES 352 (597)
T ss_dssp TTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCT----THHHHHHHHHHH
T ss_pred HHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHH----HHHHHHHHHHHh
Confidence 34666677777777766654 344589999999999999999999999988755 678899999999
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|++++++.+ ....++..+|.+|...
T Consensus 353 g~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 353 GEKNKLYLISNDLVDR------HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDP------QFGPAWIGFAHSFAIE 420 (597)
T ss_dssp TCHHHHHHHHHHHHHH------CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhh------CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHc
Confidence 9999999999999876 566788999999999999999999999999998654 3456899999999999
Q ss_pred ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 154 GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 154 g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
|+ +++|+.+|++++... +....++..+|.+|...|++++|+.+|+++++..+..
T Consensus 421 g~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 474 (597)
T 2xpi_A 421 GE--------------------HDQAISAYTTAARLF------QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYD 474 (597)
T ss_dssp TC--------------------HHHHHHHHHHHHHTT------TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCC
T ss_pred CC--------------------HHHHHHHHHHHHHhC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 99 999999999998763 2335688999999999999999999999998764432
Q ss_pred CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 234 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..++..+|.+|...|++++|+.+|+++++..+..+.... ...++..+|.+|...|++++|+.++++++.+.+.
T Consensus 475 ------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 475 ------PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp ------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred ------hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 247899999999999999999999999999887543333 3778999999999999999999999999987532
Q ss_pred hcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 313 LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 313 ~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
...++..+|.+|...|++++|..++++++++. +....++..++.+|.
T Consensus 549 ------~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~------p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 549 ------DANVHTAIALVYLHKKIPGLAITHLHESLAIS------PNEIMASDLLKRALE 595 (597)
T ss_dssp ------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHHHTTC
T ss_pred ------ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC------CCChHHHHHHHHHHh
Confidence 34689999999999999999999999999975 556778888887763
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.4e-25 Score=237.31 Aligned_cols=325 Identities=13% Similarity=0.048 Sum_probs=228.0
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH-----------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE-----------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~-----------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
++..+|.++...|++++|+.++..++. |.++...|++++|+..|+++++.+|++. .++..+|.++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYS----KVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHH----HHHHHHHHHH
Confidence 356677777888888877777765443 7777888888888888888888777764 3677777777
Q ss_pred HHhCCHHHHHHHHHHHHHHHH-----------------------------------------------------------
Q psy10738 71 FYLGDYQKAMQYHKQDLTLAR----------------------------------------------------------- 91 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~----------------------------------------------------------- 91 (609)
...|++++|+..|++++...+
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 777777777777776643321
Q ss_pred ---------------------------------------------------------Hc-----CC---hhhHHHHHHHH
Q psy10738 92 ---------------------------------------------------------NM-----ED---KLGEAKSSGNL 106 (609)
Q Consensus 92 ---------------------------------------------------------~~-----~d---~~~~~~a~~~l 106 (609)
.. .+ .+....++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 00 00 13334455555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|.++...|++++|+.++++++...+ . ..++..+|.++...|+ +++|+.+++++
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~~------~-~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~~ 296 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELFP------R-VNSYIYMALIMADRND--------------------STEYYNYFDKA 296 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHTSSC--------------------CTTGGGHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCc------c-HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHH
Confidence 5555555555555555555554432 1 4455555555555555 55555555555
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+.. .+....++..+|.++...|++++|+.++++++.+.+... .++..+|.++...|++++|+.+++++
T Consensus 297 ~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~ 364 (514)
T 2gw1_A 297 LKL------DSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI------FPYIQLACLAYRENKFDDCETLFSEA 364 (514)
T ss_dssp HTT------CTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS------HHHHHHHHHTTTTTCHHHHHHHHHHH
T ss_pred hhc------CcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 443 122244677788888888888888888888877654433 27788888888888888888888888
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH---cCChHHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA---RGNHEKALYFA 343 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~---~g~~~~A~~~~ 343 (609)
+...+.. ..++..+|.++...|++++|+.++++++.+.+..........++..+|.++.. .|++++|+.++
T Consensus 365 ~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~ 438 (514)
T 2gw1_A 365 KRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLL 438 (514)
T ss_dssp HHHSTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHH
T ss_pred HHHcccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHH
Confidence 8765542 45788899999999999999999999998877654433335588999999999 99999999999
Q ss_pred HHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCCC
Q psy10738 344 TKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLS 381 (609)
Q Consensus 344 ~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al~ 381 (609)
++++.+. +....++..++.++...|+...|..
T Consensus 439 ~~a~~~~------~~~~~~~~~la~~~~~~g~~~~A~~ 470 (514)
T 2gw1_A 439 EKASKLD------PRSEQAKIGLAQMKLQQEDIDEAIT 470 (514)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHhC------cccHHHHHHHHHHHHHhcCHHHHHH
Confidence 9999874 4456788999999999998777654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-24 Score=232.80 Aligned_cols=304 Identities=13% Similarity=0.127 Sum_probs=244.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
.-.+...|..++..|+|++|+..|++++...|+ ..++..+|.++...|++++|+.+++++++..+. ...
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~---~~~--- 74 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-----PVFYSNLSACYVSVGDLKKVVEMSTKALELKPD---YSK--- 74 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC---CHH---
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-----HHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH---HHH---
Confidence 345677899999999999999999999999984 458999999999999999999999999876221 111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH--------------------------------------------------------
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKR-------------------------------------------------------- 125 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~-------------------------------------------------------- 125 (609)
++..+|.++...|++++|+..|++
T Consensus 75 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 154 (514)
T 2gw1_A 75 VLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDK 154 (514)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC-------------------------
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhh
Confidence 234455555555555555555444
Q ss_pred ------------------------------------------------------------HHHHHHHcC-----C---cH
Q psy10738 126 ------------------------------------------------------------HLEISRQLN-----D---KL 137 (609)
Q Consensus 126 ------------------------------------------------------------al~l~~~~~-----d---~~ 137 (609)
++...+... + .+
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (514)
T 2gw1_A 155 QENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKE 234 (514)
T ss_dssp --CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHH
T ss_pred ccCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccCh
Confidence 444211100 0 13
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....++..+|.++...|+ +++|+.++++++... +. ..++..+|.++...|+++
T Consensus 235 ~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~l~~~------~~-~~~~~~l~~~~~~~~~~~ 287 (514)
T 2gw1_A 235 KLAISLEHTGIFKFLKND--------------------PLGAHEDIKKAIELF------PR-VNSYIYMALIMADRNDST 287 (514)
T ss_dssp HHHHHHHHHHHHHHHSSC--------------------HHHHHHHHHHHHHHC------CC-HHHHHHHHHHHHTSSCCT
T ss_pred HHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhhC------cc-HHHHHHHHHHHHHCCCHH
Confidence 557788899999999999 999999999998872 22 788999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+|+.++++++...+.... ++..+|.++...|++++|+.++++++.+.+.. ..++..+|.++...|+++
T Consensus 288 ~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 288 EYYNYFDKALKLDSNNSS------VYYHRGQMNFILQNYDQAGKDFDKAKELDPEN------IFPYIQLACLAYRENKFD 355 (514)
T ss_dssp TGGGHHHHHHTTCTTCTH------HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSC------SHHHHHHHHHTTTTTCHH
T ss_pred HHHHHHHHHhhcCcCCHH------HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhh------HHHHHHHHHHHHHcCCHH
Confidence 999999999987655443 88999999999999999999999999876542 458889999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH---cC
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA---LG 374 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~---~g 374 (609)
+|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+............++..+|.++.. .|
T Consensus 356 ~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 429 (514)
T 2gw1_A 356 DCETLFSEAKRKFPEA------PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVE 429 (514)
T ss_dssp HHHHHHHHHHHHSTTC------SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTT
T ss_pred HHHHHHHHHHHHcccC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcC
Confidence 9999999999875442 35889999999999999999999999999887665554456689999999999 88
Q ss_pred CCCCCCC
Q psy10738 375 MSTNDLS 381 (609)
Q Consensus 375 ~~~~al~ 381 (609)
+...|+.
T Consensus 430 ~~~~A~~ 436 (514)
T 2gw1_A 430 NFIEATN 436 (514)
T ss_dssp HHHHHHH
T ss_pred CHHHHHH
Confidence 8766543
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.6e-23 Score=227.32 Aligned_cols=265 Identities=12% Similarity=0.112 Sum_probs=222.6
Q ss_pred hHHHHHHHHHHHHhCCcchh---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 38 CRAGVAFFQAAIQAGTDDLR---TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~---~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
+++|+..|+++++..|+++. ..+.++..+|.++...|++++|+.++++++.. .+. ..++..+|.++...|
T Consensus 218 ~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~------~~~-~~~~~~l~~~~~~~~ 290 (537)
T 3fp2_A 218 LTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL------HPT-PNSYIFLALTLADKE 290 (537)
T ss_dssp HHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCC-HHHHHHHHHHTCCSS
T ss_pred HHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCC-chHHHHHHHHHHHhc
Confidence 33444444444455555433 23567889999999999999999999999998 555 789999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
++++|+.++++++...+ ....++..+|.++...|+ +++|+.++++++.+.
T Consensus 291 ~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~~---- 340 (537)
T 3fp2_A 291 NSQEFFKFFQKAVDLNP------EYPPTYYHRGQMYFILQD--------------------YKNAKEDFQKAQSLN---- 340 (537)
T ss_dssp CCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHC----
T ss_pred CHHHHHHHHHHHhccCC------CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHhC----
Confidence 99999999999998866 446689999999999999 999999999999873
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC
Q psy10738 195 DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG 274 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 274 (609)
+....++..+|.++...|++++|+.++++++...+.... ++..+|.++...|++++|+.+|++++...+...
T Consensus 341 --~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 341 --PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPE------VPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp --TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred --CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------HHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 333468999999999999999999999999998665443 888999999999999999999999999998876
Q ss_pred CcHHHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHH
Q psy10738 275 DRAVEAQACYSLGNTYTLL----------RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFAT 344 (609)
Q Consensus 275 ~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~ 344 (609)
........+..+|.++... |++++|+.++++++.+.+. ...++..+|.+|...|++++|+.+|+
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPR------SEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 6555555678889999999 9999999999999988654 24689999999999999999999999
Q ss_pred HHHHHHHHc
Q psy10738 345 KHLEISKQL 353 (609)
Q Consensus 345 ~al~l~~~~ 353 (609)
+++++....
T Consensus 487 ~al~~~~~~ 495 (537)
T 3fp2_A 487 DSAILARTM 495 (537)
T ss_dssp HHHHHC--C
T ss_pred HHHHhCCCc
Confidence 999987543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.9e-24 Score=214.31 Aligned_cols=282 Identities=14% Similarity=0.099 Sum_probs=233.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.++..|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~ 92 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPERE----EAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIAVH 92 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CcCCHHHH
Confidence 345679999999999999999999999999874 47889999999999999999999999998 66678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH-------HHHHHHH-HH-HHHHcccccccCCCCCCCCCchHhHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE-------GRALYNL-GN-VYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~-------~~~~~~l-g~-~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
..+|.++...|++++|+.++++++...+........ ......+ +. ++...|+
T Consensus 93 ~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------- 153 (327)
T 3cv0_A 93 AALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNE------------------- 153 (327)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHH-------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHccc-------------------
Confidence 999999999999999999999999876543321111 0111122 44 5777888
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+++|+.++++++... +....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|
T Consensus 154 -~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~ 220 (327)
T 3cv0_A 154 -YRECRTLLHAALEMN------PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWNKLGATLANGN 220 (327)
T ss_dssp -HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcC
Confidence 999999999998873 3345789999999999999999999999999875432 248899999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhh------HHHHHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVG------EGRACWSLGN 328 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------~~~~~~~La~ 328 (609)
++++|+.++++++...+.. ..++..+|.+|...|++++|+.++++++.+.+....... ...++..+|.
T Consensus 221 ~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 294 (327)
T 3cv0_A 221 RPQEALDAYNRALDINPGY------VRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRM 294 (327)
T ss_dssp CHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHH
Confidence 9999999999999876542 668899999999999999999999999998876433222 5678999999
Q ss_pred HHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 329 AHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 329 ~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
++..+|++++|..+++++++.....
T Consensus 295 ~~~~~g~~~~A~~~~~~~l~~~~~~ 319 (327)
T 3cv0_A 295 LLNVMNRPDLVELTYAQNVEPFAKE 319 (327)
T ss_dssp HHHHTTCHHHHHHHTTCCSHHHHHH
T ss_pred HHHhcCCHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999887654
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.92 E-value=5.5e-24 Score=215.33 Aligned_cols=281 Identities=16% Similarity=0.201 Sum_probs=241.7
Q ss_pred hhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHH
Q psy10738 3 VGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAY 70 (609)
Q Consensus 3 l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~ 70 (609)
+..+|..+...|++++|..++..++. +.+++..|++++|+.+++++++..|.++. ++..+|.++
T Consensus 25 ~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~~~~l~~~~ 100 (330)
T 3hym_B 25 VVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV----SWFAVGCYY 100 (330)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH----HHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH----HHHHHHHHH
Confidence 45678889999999999998877554 78899999999999999999999998754 889999999
Q ss_pred HHhC-CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 71 FYLG-DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 71 ~~~g-~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
...| ++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+. ...++..+|.+
T Consensus 101 ~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~ 168 (330)
T 3hym_B 101 LMVGHKNEHARRYLSKATTL------EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG------CHLPMLYIGLE 168 (330)
T ss_dssp HHSCSCHHHHHHHHHHHHTT------CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT------CSHHHHHHHHH
T ss_pred HHhhhhHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc------cHHHHHHHHHH
Confidence 9999 999999999999987 6667788999999999999999999999999998763 34567789999
Q ss_pred HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 150 YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 150 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
|...|+ +++|+.++++++... +....++..+|.++...|++++|+.++++++.+
T Consensus 169 ~~~~~~--------------------~~~A~~~~~~al~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 222 (330)
T 3hym_B 169 YGLTNN--------------------SKLAERFFSQALSIA------PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEK 222 (330)
T ss_dssp HHHTTC--------------------HHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhh--------------------HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 999999 999999999998863 334678999999999999999999999999999
Q ss_pred HHHhCCh---HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 230 AREFGDK---AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 230 ~~~~~~~---~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.+..++. .....++.++|.++...|++++|+.++++++.+.+.. ..++..+|.++...|++++|+.+++++
T Consensus 223 ~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 223 IKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQN------ASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------SHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred hhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccc------hHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 8654432 2224588999999999999999999999999886553 668899999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHH-HHcCChH
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAH-AARGNHE 337 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~-~~~g~~~ 337 (609)
+.+.+. ...++..++.++ ...|+.+
T Consensus 297 l~~~p~------~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 297 LGLRRD------DTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTTCSC------CHHHHHHHHHHHHTTTTC--
T ss_pred HccCCC------chHHHHHHHHHHHHHhCchh
Confidence 877543 345888899888 4566543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.2e-24 Score=219.70 Aligned_cols=287 Identities=14% Similarity=0.067 Sum_probs=227.1
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~ 122 (609)
..+.+++...+.++......++.+|..+...|++++|+.+|++++.. .+....++..+|.++...|++++|+.+
T Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~ 121 (365)
T 4eqf_A 48 SASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDLPVTILFMEAAILQ------DPGDAEAWQFLGITQAENENEQAAIVA 121 (365)
T ss_dssp -----CCCCCSSCTTTTCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHhhhcccCCcccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 44555555555555433456899999999999999999999999998 677789999999999999999999999
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChH----H
Q psy10738 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTA----A 198 (609)
Q Consensus 123 ~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~----~ 198 (609)
|++++.+.+ ....++..+|.+|...|+ +++|+.++++++.+.+...... .
T Consensus 122 ~~~al~~~p------~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~p~~~~~~~~~~~ 175 (365)
T 4eqf_A 122 LQRCLELQP------NNLKALMALAVSYTNTSH--------------------QQDACEALKNWIKQNPKYKYLVKNKKG 175 (365)
T ss_dssp HHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHCHHHHCC------
T ss_pred HHHHHhcCC------CCHHHHHHHHHHHHcccc--------------------HHHHHHHHHHHHHhCccchHHHhhhcc
Confidence 999999865 446789999999999999 9999999999999865542221 1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV 278 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 278 (609)
....+..+|.++...|++++|+.++++++.+.+...+ ..++.++|.+|...|++++|+.+|++++.+.+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~----- 246 (365)
T 4eqf_A 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMID----PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED----- 246 (365)
T ss_dssp -------------CCHHHHHHHHHHHHHHHHSCSSCC----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC-----
T ss_pred chHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccC----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 2445567799999999999999999999998654222 2378899999999999999999999999986653
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC--
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP-- 356 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~-- 356 (609)
..++..+|.+|...|++++|+.+|++++.+.+. ...++..+|.+|..+|++++|+.++++++++......+
T Consensus 247 -~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 319 (365)
T 4eqf_A 247 -YSLWNRLGATLANGDRSEEAVEAYTRALEIQPG------FIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQ 319 (365)
T ss_dssp -HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC-----
T ss_pred -HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcc
Confidence 678999999999999999999999999988554 35689999999999999999999999999999775542
Q ss_pred ----chHHHHHHHHHHHHHHcCCCC
Q psy10738 357 ----LGQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 357 ----~~~~~a~~~la~l~~~~g~~~ 377 (609)
.....++..++.++..+|+.+
T Consensus 320 ~~~~~~~~~~~~~l~~~~~~~g~~~ 344 (365)
T 4eqf_A 320 VPHPAISGNIWAALRIALSLMDQPE 344 (365)
T ss_dssp -------CHHHHHHHHHHHHHTCHH
T ss_pred cchhhhHHHHHHHHHHHHHHcCcHH
Confidence 123578899999999999854
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1e-21 Score=196.87 Aligned_cols=269 Identities=19% Similarity=0.185 Sum_probs=222.3
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-
Q psy10738 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME--DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL- 133 (609)
Q Consensus 57 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~--d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~- 133 (609)
.....++..+|.++...|++++|+.++++++.+..... +.+..+.++..+|.+|...|++++|+.++++++.+....
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34577999999999999999999999999999988776 678889999999999999999999999999999998877
Q ss_pred -CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH
Q psy10738 134 -NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTY 210 (609)
Q Consensus 134 -~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~ 210 (609)
.+......++..+|.+|...|+ +++|+.++++++.+.... ++.+....++.++|.++
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~ 163 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGK--------------------YKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLC 163 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTC--------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCc--------------------HHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 6677889999999999999999 999999999999998877 66788899999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------CcHHH
Q psy10738 211 YLLGNFKQAIYYHQERLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---------DRAVE 279 (609)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---------~~~~~ 279 (609)
...|++++|+.++++++.+.... .+......++..+|.+|...|++++|+.++++++.+.+... .....
T Consensus 164 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~ 243 (311)
T 3nf1_A 164 QNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMH 243 (311)
T ss_dssp HTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHH
T ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHH
Confidence 99999999999999999998876 44566678999999999999999999999999999876531 12223
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
...+..++..+...+.+.+|...+.++.... .....++..+|.+|...|++++|+.++++++++.+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~ 309 (311)
T 3nf1_A 244 AEEREECKGKQKDGTSFGEYGGWYKACKVDS------PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRK 309 (311)
T ss_dssp HHHHHHC-------CCSCCCC---------C------HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHhcCchhhHHHHHHHHHHHhhcCCCC------chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence 4455556666777778888888888776543 33567899999999999999999999999999864
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.1e-23 Score=225.18 Aligned_cols=332 Identities=14% Similarity=0.071 Sum_probs=219.8
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCc-----chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC--hhhH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTD-----DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED--KLGE 99 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~-----~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d--~~~~ 99 (609)
..|.++...|++++|+++|++|+++.+. .....+.+|.++|.+|..+|++++|+.++++++.+.+.... ....
T Consensus 56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~ 135 (472)
T 4g1t_A 56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES 135 (472)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence 3588999999999999999999886321 11223557888999999999999999999999998887653 3345
Q ss_pred HHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCC---------CCCCCCC
Q psy10738 100 AKSSGNLGNTLKVMG--KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG---------QQDPGEY 168 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~---------~~~~~~~ 168 (609)
+.++.++|.++...| +|++|+.+|++++++.| ....++..+|.++...++...... ..+|...
T Consensus 136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p------~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~ 209 (472)
T 4g1t_A 136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP------KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQ 209 (472)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCH
T ss_pred HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcch
Confidence 677888888777654 68999999999998865 334455566666554433100000 0000000
Q ss_pred ch------------HhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh
Q psy10738 169 PE------------EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK 236 (609)
Q Consensus 169 ~~------------~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 236 (609)
.. .....+++|+.++++++.+ .+....++.++|.+|...|++++|+.++++++++.+...
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-- 281 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEK------APGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-- 281 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHH------CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH--
Confidence 00 0011245566666665554 233456788888899999999999999988888765433
Q ss_pred HHHHHHHHHHHHHHHHh-------------------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 237 AAERRANSNLGNSHIFL-------------------GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 237 ~~~~~~~~~la~~~~~~-------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
.++.++|.+|... +.+++|+.++++++.+.+.. ..++..+|.+|...|+++
T Consensus 282 ----~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 282 ----YLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNL------FRVCSILASLHALADQYE 351 (472)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTT------CCCHHHHHHHHHHTTCHH
T ss_pred ----HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCch------hhhhhhHHHHHHHhccHH
Confidence 2667777776543 23456666666666655443 446788999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHH-HHHcCChHHHHHHHHHHHHHHHH------------------cCCCch
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNA-HAARGNHEKALYFATKHLEISKQ------------------LGDPLG 358 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~-~~~~g~~~~A~~~~~~al~l~~~------------------~~~~~~ 358 (609)
+|+.+|++++.+.+. ......++..+|.+ +...|++++|+.+|++++.+... +...+.
T Consensus 352 ~A~~~~~kaL~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~ 428 (472)
T 4g1t_A 352 EAEYYFQKEFSKELT---PVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGA 428 (472)
T ss_dssp HHHHHHHHHHHSCCC---HHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-
T ss_pred HHHHHHHHHHhcCCC---ChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999999976432 22233456667765 45789999999999999876321 122244
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCCCchh
Q psy10738 359 QVTAQMNVTDLRKALGMSTNDLSPDSL 385 (609)
Q Consensus 359 ~~~a~~~la~l~~~~g~~~~al~~~~~ 385 (609)
...++..||.++...|+..+|+.....
T Consensus 429 ~~~~~~~LG~~~~~~g~~~~A~~~y~k 455 (472)
T 4g1t_A 429 DSEALHVLAFLQELNEKMQQADEDSER 455 (472)
T ss_dssp CTTHHHHHHHHHHHHHHCC--------
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467899999999999999998874443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-21 Score=203.21 Aligned_cols=303 Identities=12% Similarity=0.035 Sum_probs=255.0
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
++...+.++..+|.++...|++++|+.++++++.... .++......++..+|.++...|++++|..++++++.+.+..+
T Consensus 9 ~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 87 (373)
T 1hz4_A 9 EDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHD 87 (373)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcC
Confidence 3455677889999999999999999999999998753 233344667899999999999999999999999999999999
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh--HHHHHHHHHHHHHHHH
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT--AAQGRACGNLGNTYYL 212 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~lg~~~~~ 212 (609)
+......++.++|.++...|+ +++|+.++++++.+.+..+.. +....++.++|.++..
T Consensus 88 ~~~~~~~~~~~la~~~~~~G~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~ 147 (373)
T 1hz4_A 88 VWHYALWSLIQQSEILFAQGF--------------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147 (373)
T ss_dssp CHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHH
Confidence 888888899999999999999 999999999999999887765 6678899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc-HHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR-AVEAQACYSLGNTYT 291 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~ 291 (609)
.|++++|..++++++.+.+..++.. ...++.++|.++...|++++|..++++++.+.+..+.. .........++.++.
T Consensus 148 ~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 226 (373)
T 1hz4_A 148 WARLDEAEASARSGIEVLSSYQPQQ-QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQ 226 (373)
T ss_dssp TTCHHHHHHHHHHHHHHTTTSCGGG-GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhhccCcHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999988765543 45688999999999999999999999999987665443 222223335567788
Q ss_pred HhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 292 LLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 292 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
..|++++|..++.+++...+. ........+..+|.++...|++++|...+++++.+....+.......++..++.++.
T Consensus 227 ~~g~~~~A~~~~~~a~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 227 MTGDKAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp HTTCHHHHHHHHHHSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHhCCCCCCC--cchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 999999999999998764321 111223356789999999999999999999999999988877677789999999999
Q ss_pred HcCCCCCCCC
Q psy10738 372 ALGMSTNDLS 381 (609)
Q Consensus 372 ~~g~~~~al~ 381 (609)
..|+...|..
T Consensus 305 ~~g~~~~A~~ 314 (373)
T 1hz4_A 305 QAGRKSDAQR 314 (373)
T ss_dssp HHTCHHHHHH
T ss_pred HhCCHHHHHH
Confidence 9998776654
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-21 Score=190.18 Aligned_cols=249 Identities=15% Similarity=0.191 Sum_probs=184.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ChhhHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME-DKLGEAK 101 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-d~~~~~~ 101 (609)
..+...|..++..|++++|+.+|+++++.. .+. .++..+|.++...|++++|+.++++++.+.+... +.+..+.
T Consensus 6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~----~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 80 (258)
T 3uq3_A 6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDI----TYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISK 80 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCT----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccH----HHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHH
Confidence 345566888888888888888888888887 543 4788888888888888888888888888866543 3444478
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
++..+|.++...|++++|+.++++++.+.+. +.++...|+ +++|+.
T Consensus 81 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~--------------~~~~~~~~~--------------------~~~a~~ 126 (258)
T 3uq3_A 81 SFARIGNAYHKLGDLKKTIEYYQKSLTEHRT--------------ADILTKLRN--------------------AEKELK 126 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC--------------HHHHHHHHH--------------------HHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCch--------------hHHHHHHhH--------------------HHHHHH
Confidence 8888888888888888888888888876541 355667777 888888
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
.+++++.. .+....++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.
T Consensus 127 ~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 127 KAEAEAYV------NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHc------CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHHHHHH
Confidence 88887765 45566778888888888888888888888887765432 2367778888888888888888
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~ 328 (609)
++++++...+.. ..++..+|.++...|++++|+.++++++.+.++.+..+....++..++.
T Consensus 195 ~~~~al~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~ 255 (258)
T 3uq3_A 195 DCNKAIEKDPNF------VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYK 255 (258)
T ss_dssp HHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHH
T ss_pred HHHHHHHhCHHH------HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHH
Confidence 888877765432 5567777777777777777777777777777665554444445554444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=5.2e-22 Score=193.20 Aligned_cols=252 Identities=15% Similarity=0.188 Sum_probs=220.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CcH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN-DKL 137 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~-d~~ 137 (609)
.+..+..+|.+++..|++++|+.++++++.. . ....++..+|.++...|++++|+.++++++.+.+... +..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~------~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWEL------H-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------S-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh------h-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH
Confidence 4678999999999999999999999999998 3 4567899999999999999999999999999998764 444
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....++..+|.+|...|+ +++|+.++++++.+... +.++...|+++
T Consensus 77 ~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~~~~--------------~~~~~~~~~~~ 122 (258)
T 3uq3_A 77 VISKSFARIGNAYHKLGD--------------------LKKTIEYYQKSLTEHRT--------------ADILTKLRNAE 122 (258)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHCCC--------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHhcCch--------------hHHHHHHhHHH
Confidence 558899999999999999 99999999999986311 45677888999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
+|+..+++++...+. ...++..+|.++...|++++|+.++++++...+.. ..++..+|.++...|+++
T Consensus 123 ~a~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~l~~~~~~~~~~~ 190 (258)
T 3uq3_A 123 KELKKAEAEAYVNPE------KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------ARGYSNRAAALAKLMSFP 190 (258)
T ss_dssp HHHHHHHHHHHCCHH------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHcCcc------hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHhCCHH
Confidence 999999999886444 34589999999999999999999999999876653 678999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDL 369 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l 369 (609)
+|+.++++++.+.+. ...++..+|.++...|++++|+.++++++++..+.+..+....++..++.+
T Consensus 191 ~A~~~~~~al~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 191 EAIADCNKAIEKDPN------FVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCHH------HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 999999999987544 356899999999999999999999999999998888777777777777654
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.90 E-value=1e-22 Score=217.55 Aligned_cols=301 Identities=15% Similarity=0.104 Sum_probs=219.9
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH--------------------HHHHHh--cCChHHHHHHHHHHHHhCCcchhHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE--------------------GERLCK--AGDCRAGVAFFQAAIQAGTDDLRTL 59 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~--------------------g~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~ 59 (609)
++++||.++...|++++|..++..++. |..+.. .++|++|+.+|+++++++|+++.
T Consensus 96 ~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~-- 173 (472)
T 4g1t_A 96 TWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPE-- 173 (472)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHH--
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHH--
Confidence 467899999999999999988876543 334433 45799999999999999998865
Q ss_pred HHHHHHHHHHHHH---hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHH
Q psy10738 60 SAIYSQLGNAYFY---LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 60 a~~~~~lg~~~~~---~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~ 132 (609)
++..+|.++.. .+++++|+..+++++++ .+....++..+|..+.. .|++++|+.++++++.+.+
T Consensus 174 --~~~~~~~~~~~l~~~~~~~~al~~~~~al~l------~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~- 244 (472)
T 4g1t_A 174 --FTSGLAIASYRLDNWPPSQNAIDPLRQAIRL------NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP- 244 (472)
T ss_dssp --HHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH------CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-
T ss_pred --HHHHHHHHHHHhcCchHHHHHHHHHHHHhhc------CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-
Confidence 56666766544 57778999999999998 66667777777766654 4678899999999988765
Q ss_pred cCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 133 LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL 212 (609)
Q Consensus 133 ~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 212 (609)
....++.++|.+|...|+ +++|+.++++++++ .+..+.++.++|.+|..
T Consensus 245 -----~~~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~y~~ 293 (472)
T 4g1t_A 245 -----GVTDVLRSAAKFYRRKDE--------------------PDKAIELLKKALEY------IPNNAYLHCQIGCCYRA 293 (472)
T ss_dssp -----SCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHH
T ss_pred -----cHHHHHHHHHHHHHHcCc--------------------hHHHHHHHHHHHHh------CCChHHHHHHHHHHHHH
Confidence 456788999999999999 99999999999987 34456788888888764
Q ss_pred c-------------------CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 213 L-------------------GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 213 ~-------------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
. +.+++|+.++++++.+.+.... ++..+|.+|...|++++|+.+|++++.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~-- 365 (472)
T 4g1t_A 294 KVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDNLFR------VCSILASLHALADQYEEAEYYFQKEFSKEL-- 365 (472)
T ss_dssp HHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTTTCC------CHHHHHHHHHHTTCHHHHHHHHHHHHHSCC--
T ss_pred HHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhh------hhhhHHHHHHHhccHHHHHHHHHHHHhcCC--
Confidence 3 3466788888888877766666 888999999999999999999999987532
Q ss_pred CCcHHHHHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHHHHhcc------------------hhhHHHHHHHHHHHHHHcC
Q psy10738 274 GDRAVEAQACYSLGNT-YTLLRDYPTAIDYHLRHLIIAQQLMD------------------RVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~-~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~La~~~~~~g 334 (609)
+......++..+|.+ +...|++++|+.+|.+++.+.+.... .+..+.++..||.+|...|
T Consensus 366 -~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g 444 (472)
T 4g1t_A 366 -TPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNE 444 (472)
T ss_dssp -CHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHH
T ss_pred -CChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 222234456667765 45789999999999999876432211 1223468899999999999
Q ss_pred ChHHHHHHHHHHHHHHHHc
Q psy10738 335 NHEKALYFATKHLEISKQL 353 (609)
Q Consensus 335 ~~~~A~~~~~~al~l~~~~ 353 (609)
++++|+.+|++|+++....
T Consensus 445 ~~~~A~~~y~kALe~~~~~ 463 (472)
T 4g1t_A 445 KMQQADEDSERGLESGSLI 463 (472)
T ss_dssp HCC----------------
T ss_pred CHHHHHHHHHHHHhcCCCC
Confidence 9999999999999987544
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.89 E-value=5.1e-21 Score=191.69 Aligned_cols=279 Identities=21% Similarity=0.222 Sum_probs=222.0
Q ss_pred hhHhhhcCCCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCC----cchhHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 7 SSSDSQSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGT----DDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82 (609)
Q Consensus 7 g~~~~~~g~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~----~~~~~~a~~~~~lg~~~~~~g~~~~A~~~ 82 (609)
.....+.+..+.......+...|..+...|++++|+.+|+++++... .+......++..+|.+|...|++++|+.+
T Consensus 12 ~~~~~q~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 91 (311)
T 3nf1_A 12 ENLYFQGGGYEIPARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANL 91 (311)
T ss_dssp GGGSCSSSCTTSCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ccccccCCCCcchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 34444555555555666777789999999999999999999998632 12344577899999999999999999999
Q ss_pred HHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 83 HKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 83 ~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
+++++.+.+.. .+.+....++..+|.++...|++++|+.++++++++.... ++......++.++|.++...|+
T Consensus 92 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--- 168 (311)
T 3nf1_A 92 LNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGK--- 168 (311)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC---
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCC---
Confidence 99999998877 6678889999999999999999999999999999998776 6667888999999999999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC--
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-- 234 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-- 234 (609)
+++|+.++++++.+.... ++.+....++..+|.+|...|++++|+.++++++.+.+...
T Consensus 169 -----------------~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 231 (311)
T 3nf1_A 169 -----------------YEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFG 231 (311)
T ss_dssp -----------------HHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred -----------------HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999998877 55677889999999999999999999999999999876521
Q ss_pred -------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 235 -------DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 235 -------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
........+..++..+...+.+.+|...+.++....+ ....++..+|.+|...|++++|+.++++++
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 305 (311)
T 3nf1_A 232 SVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSP------TVTTTLKNLGALYRRQGKFEAAETLEEAAM 305 (311)
T ss_dssp ------CCHHHHHHHHHHC-------CCSCCCC---------CH------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCc------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1122334455556666667777777777777765443 357899999999999999999999999999
Q ss_pred HHHH
Q psy10738 308 IIAQ 311 (609)
Q Consensus 308 ~~~~ 311 (609)
++.+
T Consensus 306 ~l~~ 309 (311)
T 3nf1_A 306 RSRK 309 (311)
T ss_dssp HHHC
T ss_pred HHhh
Confidence 8764
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.2e-22 Score=196.91 Aligned_cols=243 Identities=15% Similarity=0.154 Sum_probs=210.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..++..|++++|+..|+++++..|.+.. ++..+|.+|...|++++|+.++++++.. ..+....+.++.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~----~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~ 78 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY----IYNRRAVCYYELAKYDLAQKDIETYFSK---VNATKAKSADFE 78 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST----THHHHHHHHHHTTCHHHHHHHHHHHHTT---SCTTTCCHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc---cCchhHHHHHHH
Confidence 456799999999999999999999999998755 7899999999999999999999999883 133445578899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++...|++++|+.++++++++.+ ....++..+|.+|...|+ +++|+.+++
T Consensus 79 ~lg~~~~~~~~~~~A~~~~~~a~~~~~------~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~ 132 (272)
T 3u4t_A 79 YYGKILMKKGQDSLAIQQYQAAVDRDT------TRLDMYGQIGSYFYNKGN--------------------FPLAIQYME 132 (272)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST------TCTHHHHHHHHHHHHTTC--------------------HHHHHHHHG
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCc------ccHHHHHHHHHHHHHccC--------------------HHHHHHHHH
Confidence 999999999999999999999999866 345689999999999999 999999999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC---HHHHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE---YQAASE 261 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~A~~ 261 (609)
+++.+ .+....++.++|...+..+++++|+.++++++++.+.. ..++..+|.++...|+ +++|+.
T Consensus 133 ~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~A~~ 200 (272)
T 3u4t_A 133 KQIRP------TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGLAKP 200 (272)
T ss_dssp GGCCS------SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCTTHH
T ss_pred HHhhc------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHHHHH
Confidence 99887 34446789999955566679999999999999886654 2488899999999999 999999
Q ss_pred HHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 262 HYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 262 ~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
++++++.+.....+ ......++..+|.+|...|++++|+.++++++.+.+.
T Consensus 201 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 201 YYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 99999999855443 3445678999999999999999999999999998765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.5e-22 Score=197.66 Aligned_cols=258 Identities=15% Similarity=0.105 Sum_probs=216.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+++.+|.+++..|++++|+.+++++++. .+....++..+|.++...|++++|+.++++++. .+ .+....+.
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~--~~~~~~~~ 75 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAK------KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KV--NATKAKSA 75 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHT------TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TS--CTTTCCHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-cc--CchhHHHH
Confidence 6788999999999999999999999987 556677899999999999999999999999988 22 34445577
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
++..+|.++...|+ +++|+.++++++++. +....++.++|.+|...|++++|+.
T Consensus 76 ~~~~lg~~~~~~~~--------------------~~~A~~~~~~a~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~ 129 (272)
T 3u4t_A 76 DFEYYGKILMKKGQ--------------------DSLAIQQYQAAVDRD------TTRLDMYGQIGSYFYNKGNFPLAIQ 129 (272)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHS------TTCTHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHccc--------------------HHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHccCHHHHHH
Confidence 89999999999999 999999999999873 3345689999999999999999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCC---HHH
Q psy10738 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD---YPT 298 (609)
Q Consensus 222 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~---~~~ 298 (609)
++++++++.+.. ..++.++|......+++++|+.++++++++.+.. ..++..+|.++...|+ +++
T Consensus 130 ~~~~al~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~------~~~~~~~~~~~~~~~~~~~~~~ 197 (272)
T 3u4t_A 130 YMEKQIRPTTTD------PKVFYELGQAYYYNKEYVKADSSFVKVLELKPNI------YIGYLWRARANAAQDPDTKQGL 197 (272)
T ss_dssp HHGGGCCSSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHSTTCSSCT
T ss_pred HHHHHhhcCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc------hHHHHHHHHHHHHcCcchhhHH
Confidence 999998873322 3488899955555679999999999999987653 6788899999999999 999
Q ss_pred HHHHHHHHHHHHHHhcc--hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q psy10738 299 AIDYHLRHLIIAQQLMD--RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372 (609)
Q Consensus 299 A~~~~~~al~~~~~~~~--~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~ 372 (609)
|+.++++++.+....++ ......++..+|.+|...|++++|+.++++++++. +....++..++.+...
T Consensus 198 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~a~~~l~~~~~~ 267 (272)
T 3u4t_A 198 AKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD------PTNKKAIDGLKMKLEH 267 (272)
T ss_dssp THHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TTCHHHHHHHC-----
T ss_pred HHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC------ccHHHHHHHhhhhhcc
Confidence 99999999999866555 34456799999999999999999999999999986 4556666666655443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=8.7e-21 Score=189.61 Aligned_cols=228 Identities=11% Similarity=0.025 Sum_probs=192.9
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRA 142 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~ 142 (609)
|...|.+|...|++++|+.+|.+++.+....++....+.++.++|.+|..+|++++|+.+|++++.+.+..++....+.+
T Consensus 40 ~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~ 119 (292)
T 1qqe_A 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (292)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 33346788899999999999999999999999888889999999999999999999999999999999999998888999
Q ss_pred HHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 143 LYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 143 ~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
+.++|.+|... |+ +++|+.+|++++.+.+..++......++.++|.++..+|++++|+.
T Consensus 120 ~~~lg~~~~~~lg~--------------------~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 179 (292)
T 1qqe_A 120 KFELGEILENDLHD--------------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASD 179 (292)
T ss_dssp HHHHHHHHHHTTCC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHhhcC--------------------HHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHH
Confidence 99999999996 99 9999999999999999888777778899999999999999999999
Q ss_pred HHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH--HhCCHHH
Q psy10738 222 YHQERLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT--LLRDYPT 298 (609)
Q Consensus 222 ~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~--~~g~~~~ 298 (609)
+|++++.+.+..... .....++.++|.++..+|++++|+.+|++++.+.+...... ....+..++..+. ..+++++
T Consensus 180 ~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~-~~~~l~~l~~~~~~~~~~~~~~ 258 (292)
T 1qqe_A 180 IYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLSE 258 (292)
T ss_dssp HHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHH
T ss_pred HHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHHHHcCCHHHHHH
Confidence 999999987765542 23445789999999999999999999999999888764322 2445666777665 4577999
Q ss_pred HHHHHHHHHHHHH
Q psy10738 299 AIDYHLRHLIIAQ 311 (609)
Q Consensus 299 A~~~~~~al~~~~ 311 (609)
|+..|++++.+.+
T Consensus 259 A~~~~~~~~~l~~ 271 (292)
T 1qqe_A 259 HCKEFDNFMRLDK 271 (292)
T ss_dssp HHHHHTTSSCCCH
T ss_pred HHHHhccCCccHH
Confidence 9998887765543
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.88 E-value=5.9e-22 Score=200.07 Aligned_cols=276 Identities=12% Similarity=0.033 Sum_probs=223.7
Q ss_pred cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10738 54 DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 54 ~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 133 (609)
.++......++.+|..+...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+
T Consensus 15 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-- 86 (327)
T 3cv0_A 15 NNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQA------APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-- 86 (327)
T ss_dssp SCGGGGSSCHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--
T ss_pred ccchhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc--
Confidence 344333457889999999999999999999999987 667788999999999999999999999999998855
Q ss_pred CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH-------HHHHHHH
Q psy10738 134 NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ-------GRACGNL 206 (609)
Q Consensus 134 ~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-------~~~~~~l 206 (609)
....++..+|.++...|+ +++|+.++++++...+........ ......+
T Consensus 87 ----~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (327)
T 3cv0_A 87 ----KDIAVHAALAVSHTNEHN--------------------ANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQ 142 (327)
T ss_dssp ----TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHTSTTTTTC-----------------
T ss_pred ----CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHH
Confidence 346789999999999999 999999999998764332211100 0011122
Q ss_pred -HH-HHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 207 -GN-TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284 (609)
Q Consensus 207 -g~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 284 (609)
|. ++...|++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++.
T Consensus 143 ~~~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~ 210 (327)
T 3cv0_A 143 SEDFFFAAPNEYRECRTLLHAALEMNPND------AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD------AQLWN 210 (327)
T ss_dssp ---CCTTSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHH
T ss_pred HHhHHHHHcccHHHHHHHHHHHHhhCCCC------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCc------HHHHH
Confidence 44 5888999999999999999875542 3488999999999999999999999999876542 67889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch------
Q psy10738 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG------ 358 (609)
Q Consensus 285 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~------ 358 (609)
.+|.++...|++++|+.++++++...+. ...++..+|.+|...|++++|+.++++++.+.........
T Consensus 211 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 284 (327)
T 3cv0_A 211 KLGATLANGNRPQEALDAYNRALDINPG------YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREA 284 (327)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhc
Confidence 9999999999999999999999987543 3458899999999999999999999999998865433332
Q ss_pred HHHHHHHHHHHHHHcCCCCCC
Q psy10738 359 QVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 359 ~~~a~~~la~l~~~~g~~~~a 379 (609)
...++..++.++..+|+.+.|
T Consensus 285 ~~~~~~~l~~~~~~~g~~~~A 305 (327)
T 3cv0_A 285 TRSMWDFFRMLLNVMNRPDLV 305 (327)
T ss_dssp HHHHHHHHHHHHHHTTCHHHH
T ss_pred CHHHHHHHHHHHHhcCCHHHH
Confidence 678999999999999987654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.88 E-value=3.1e-20 Score=187.06 Aligned_cols=217 Identities=14% Similarity=0.109 Sum_probs=130.7
Q ss_pred hcCChHHHHHHHHHHHHhCCc-------chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTD-------DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~-------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
..|++++|..+++++.+..+. +.......|...|.+|...|++++|+.+|.+++.+....++....+.++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 356778888888888765332 2233333444455566666666666666666666666655555556666666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQN 186 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 186 (609)
|.+|..+|++++|+.+|++++++.+..++....+.++.++|.+|.. |+ +++|+.+|+++
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~--------------------~~~A~~~~~~A 141 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LD--------------------LSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TC--------------------HHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CC--------------------HHHHHHHHHHH
Confidence 6666666666666666666666666555555555666666666655 66 66666666666
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 187 LALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266 (609)
Q Consensus 187 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 266 (609)
+.+.+..++......++.++|.+|..+|++++|+.+|++++.+.+..+.......++.++|.++..+|++++|+.+|+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555555555566666666666666666666666666666655554444445556666666666666666666666
Q ss_pred HHHHHH
Q psy10738 267 LVLAQD 272 (609)
Q Consensus 267 l~~~~~ 272 (609)
+ +.+.
T Consensus 222 l-~~p~ 226 (307)
T 2ifu_A 222 Y-SIPG 226 (307)
T ss_dssp T-TSTT
T ss_pred h-CCCC
Confidence 5 4443
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.88 E-value=7.7e-21 Score=190.02 Aligned_cols=275 Identities=11% Similarity=0.030 Sum_probs=218.6
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
+|.+++.+|-+.-+.... .+ .++.. +++++|+.+|.++ |.+|...|++
T Consensus 3 ~a~~~~~~a~k~~~~~~~----~~-----~~~~~~~~~~~~~A~~~~~~a--------------------~~~~~~~g~~ 53 (292)
T 1qqe_A 3 DPVELLKRAEKKGVPSSG----FM-----KLFSGSDSYKFEEAADLCVQA--------------------ATIYRLRKEL 53 (292)
T ss_dssp CHHHHHHHHHHHSSCCCT----HH-----HHHSCCSHHHHHHHHHHHHHH--------------------HHHHHHTTCT
T ss_pred cHHHHHHHHHHHhCcCCC----cc-----hhcCCCCCccHHHHHHHHHHH--------------------HHHHHHcCCH
Confidence 577888888887664321 11 12222 2488888888876 5567889999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 196 (609)
++|+.+|.+++++.+..+++...+.++.++|.+|...|+ +++|+.+|++++.+....++.
T Consensus 54 ~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~--------------------~~~A~~~~~~Al~l~~~~g~~ 113 (292)
T 1qqe_A 54 NLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------------------SVNAVDSLENAIQIFTHRGQF 113 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHcCCH
Confidence 999999999999999999988889999999999999999 999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 197 AAQGRACGNLGNTYYLL-GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
...+.++.++|.+|... |++++|+.+|++++++.+..++......++.++|.++..+|++++|+.+|++++.+.+....
T Consensus 114 ~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 114 RRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 88899999999999996 99999999999999999988877777789999999999999999999999999998776544
Q ss_pred c-HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH--HcCChHHHHHHHHHHHHHHHH
Q psy10738 276 R-AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA--ARGNHEKALYFATKHLEISKQ 352 (609)
Q Consensus 276 ~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~--~~g~~~~A~~~~~~al~l~~~ 352 (609)
. .....++..+|.++..+|++++|+.+|++++.+.+..... .....+..++..+. ..+++++|+..|.+++.+.
T Consensus 194 ~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~-~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~-- 270 (292)
T 1qqe_A 194 SQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS-RESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD-- 270 (292)
T ss_dssp TGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC--
T ss_pred ccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc-HHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccH--
Confidence 2 3456688999999999999999999999999988876542 23445666777665 4567888888776665432
Q ss_pred cCCCchHHHHHHHHHHHH
Q psy10738 353 LGDPLGQVTAQMNVTDLR 370 (609)
Q Consensus 353 ~~~~~~~~~a~~~la~l~ 370 (609)
+.....+..+-...
T Consensus 271 ----~~~~~~~~~~k~~~ 284 (292)
T 1qqe_A 271 ----KWKITILNKIKESI 284 (292)
T ss_dssp ----HHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHh
Confidence 34444444444433
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-20 Score=187.79 Aligned_cols=246 Identities=11% Similarity=0.057 Sum_probs=205.8
Q ss_pred HhCCHHHHHHHHHHHHHHHHH-----cCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH
Q psy10738 72 YLGDYQKAMQYHKQDLTLARN-----MEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNL 146 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~~~~-----~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~l 146 (609)
..|++++|.++++++.+..+. .++.......+...|.+|...|++++|+.+|.+++++.+..++....+.++.++
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 357888999999988877552 234455566777788899999999999999999999999998888889999999
Q ss_pred HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 147 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
|.+|...|+ +++|+.+|++++.+....++....+.++.++|.+|.. |++++|+.+|+++
T Consensus 83 g~~~~~~g~--------------------~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 83 GMMLKDLQR--------------------MPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTC--------------------GGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHhCCC--------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 999999999 9999999999999998888888888899999999988 9999999999999
Q ss_pred HHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 227 LKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 227 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
+.+.+..++......++.++|.+|..+|++++|+.+|++++.+.+..+.......++..+|.++..+|++++|+.+|+++
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999888877778899999999999999999999999999999888776666778889999999999999999999999
Q ss_pred HHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHH
Q psy10738 307 LIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341 (609)
Q Consensus 307 l~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 341 (609)
+ +.+.... ......+..++..+ ..|+.+.+..
T Consensus 222 l-~~p~~~~-~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 222 Y-SIPGFSG-SEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp T-TSTTSTT-SHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred h-CCCCCCC-CHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 8 7655433 23444566666655 5677654444
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-20 Score=183.46 Aligned_cols=259 Identities=19% Similarity=0.126 Sum_probs=209.3
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcC--ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNME--DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYN 145 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~--d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~ 145 (609)
....|++++|+.++++++++..+.. +.+..+.++..+|.++...|++++|+.++++++.+.... ++....+.++.+
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 3457899999999999999988763 567889999999999999999999999999999999877 677788999999
Q ss_pred HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q psy10738 146 LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYH 223 (609)
Q Consensus 146 lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 223 (609)
+|.+|...|+ +++|+.++++++.+.+.. .+.+....++.++|.+|...|++++|+.++
T Consensus 91 l~~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 150 (283)
T 3edt_B 91 LAVLYGKRGK--------------------YKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYY 150 (283)
T ss_dssp HHHHHHTTTC--------------------HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHhcc--------------------HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999 999999999999998876 345788899999999999999999999999
Q ss_pred HHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---CcHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 224 QERLKIAREF--GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG---DRAVEAQACYSLGNTYTLLRDYPT 298 (609)
Q Consensus 224 ~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---~~~~~~~~~~~la~~~~~~g~~~~ 298 (609)
++++.+.... .+......++.++|.+|...|++++|+.++++++.+.+... ........+..++..+...+.+..
T Consensus 151 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 230 (283)
T 3edt_B 151 RRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRD 230 (283)
T ss_dssp HHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhH
Confidence 9999997765 33556678999999999999999999999999999877631 112223455666666666655555
Q ss_pred HHHHHHHHHHHHHHhc-chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 299 AIDYHLRHLIIAQQLM-DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 299 A~~~~~~al~~~~~~~-~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
+.. +..+........ +......++..+|.+|...|++++|..++++++++
T Consensus 231 ~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 231 SAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp -------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444 444444444433 34667789999999999999999999999999875
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.86 E-value=2.9e-21 Score=199.66 Aligned_cols=248 Identities=10% Similarity=0.003 Sum_probs=209.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD-YQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
.+...|.++...|++++|+..|++++.++|++. .+|+.+|.++..+|+ +++|+.++++++.+ .+....+
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~----~a~~~~g~~l~~~g~d~~eAl~~~~~al~l------~P~~~~a 168 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELNAANY----TVWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPKNYQV 168 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhCccCH----HHHHHHHHHHHHcccCHHHHHHHHHHHHHH------CCCCHHH
Confidence 345568999999999999999999999999985 489999999999997 99999999999999 8889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
|+++|.++..+|++++|+.+|++++++.+ ....+++++|.++...|+ +++|+.+
T Consensus 169 ~~~~g~~~~~~g~~~eAl~~~~kal~ldP------~~~~a~~~lg~~~~~~g~--------------------~~eAl~~ 222 (382)
T 2h6f_A 169 WHHRRVLVEWLRDPSQELEFIADILNQDA------KNYHAWQHRQWVIQEFKL--------------------WDNELQY 222 (382)
T ss_dssp HHHHHHHHHHHTCCTTHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC--------------------CTTHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCc------cCHHHHHHHHHHHHHcCC--------------------hHHHHHH
Confidence 99999999999999999999999999877 567899999999999999 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHH-cCCHHHH-----HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYL-LGNFKQA-----IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG-- 254 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-- 254 (609)
|++++++ .+....+|+++|.++.. .|.+++| +.+|++++.+.+.... +|.++|.++...|
T Consensus 223 ~~~al~l------~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~------a~~~l~~ll~~~g~~ 290 (382)
T 2h6f_A 223 VDQLLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES------AWNYLKGILQDRGLS 290 (382)
T ss_dssp HHHHHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTTCGG
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHH------HHHHHHHHHHccCcc
Confidence 9999998 55567899999999999 5555788 5899999998765443 8999999999988
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC--------C-HHHHHHHHHHH-HHHHHHhcchhhHHHHHH
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR--------D-YPTAIDYHLRH-LIIAQQLMDRVGEGRACW 324 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--------~-~~~A~~~~~~a-l~~~~~~~~~~~~~~~~~ 324 (609)
++++|++.+.++ +..+ ....++..+|.+|..+| + +++|+.+|+++ +++.+. ....|.
T Consensus 291 ~~~~a~~~~~~~-~~~p------~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~------r~~~w~ 357 (382)
T 2h6f_A 291 KYPNLLNQLLDL-QPSH------SSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTI------RKEYWR 357 (382)
T ss_dssp GCHHHHHHHHHH-TTTC------CCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGG------GHHHHH
T ss_pred chHHHHHHHHHh-ccCC------CCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCch------hHHHHH
Confidence 689999888765 2221 13678889999999875 2 58898888887 655433 344666
Q ss_pred HHHHHHHH
Q psy10738 325 SLGNAHAA 332 (609)
Q Consensus 325 ~La~~~~~ 332 (609)
.++..+..
T Consensus 358 ~~~~~l~~ 365 (382)
T 2h6f_A 358 YIGRSLQS 365 (382)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.85 E-value=5e-21 Score=197.94 Aligned_cols=252 Identities=11% Similarity=-0.034 Sum_probs=215.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCcH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-YDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~d~~ 137 (609)
...++..+|.++...|++++|+..+++++.+ .+....+|+++|.++..+|+ +++|+.+|++++.+.+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l------~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P------ 163 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP------ 163 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCC------
Confidence 4678999999999999999999999999999 88899999999999999997 9999999999999877
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....+|+++|.++...|+ +++|+.+|++++.+ .+....+|.++|.++..+|+++
T Consensus 164 ~~~~a~~~~g~~~~~~g~--------------------~~eAl~~~~kal~l------dP~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 164 KNYQVWHHRRVLVEWLRD--------------------PSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp TCHHHHHHHHHHHHHHTC--------------------CTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCCT
T ss_pred CCHHHHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh------CccCHHHHHHHHHHHHHcCChH
Confidence 567799999999999999 99999999999998 5566789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCCHHHH-----HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAA-----SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT 291 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A-----~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 291 (609)
+|+.++++++++.+.... +|+++|.++.. .|.+++| +.+|++++.+.+.. ..++..+|.++.
T Consensus 218 eAl~~~~~al~l~P~~~~------a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~------~~a~~~l~~ll~ 285 (382)
T 2h6f_A 218 NELQYVDQLLKEDVRNNS------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGILQ 285 (382)
T ss_dssp THHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCCCCHH------HHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHH
Confidence 999999999998766544 99999999999 5555777 58999999988764 678999999999
Q ss_pred HhC--CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC--------C-hHHHHHHHHHH-HHHHHHcCCCchH
Q psy10738 292 LLR--DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG--------N-HEKALYFATKH-LEISKQLGDPLGQ 359 (609)
Q Consensus 292 ~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g--------~-~~~A~~~~~~a-l~l~~~~~~~~~~ 359 (609)
..| ++++|++.+.++ .. ......++..+|.+|..+| + +++|+.+|+++ +++. +..
T Consensus 286 ~~g~~~~~~a~~~~~~~-~~------~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D------P~r 352 (382)
T 2h6f_A 286 DRGLSKYPNLLNQLLDL-QP------SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKD------TIR 352 (382)
T ss_dssp TTCGGGCHHHHHHHHHH-TT------TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC------GGG
T ss_pred ccCccchHHHHHHHHHh-cc------CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhC------chh
Confidence 988 699999888764 21 2224568889999999985 2 47888888876 5543 666
Q ss_pred HHHHHHHHHHHHHc
Q psy10738 360 VTAQMNVTDLRKAL 373 (609)
Q Consensus 360 ~~a~~~la~l~~~~ 373 (609)
...+..++..+...
T Consensus 353 ~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 353 KEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 77788888777654
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=1.1e-20 Score=180.14 Aligned_cols=195 Identities=17% Similarity=0.150 Sum_probs=158.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|++++|+..|+++++.+|+++. ++..+|.++...|++++|+..+++++++ .|....++
T Consensus 7 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~ 76 (217)
T 2pl2_A 7 NPLRLGVQLYALGRYDAALTLFERALKENPQDPE----ALYWLARTQLKLGLVNPALENGKTLVAR------TPRYLGGY 76 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHH
Confidence 3456699999999999999999999999998854 8899999999999999999999999999 78888999
Q ss_pred HHHHHHHHHc-----------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHh
Q psy10738 104 GNLGNTLKVM-----------GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEV 172 (609)
Q Consensus 104 ~~lg~~~~~~-----------g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~ 172 (609)
.++|.++... |++++|+..+++++++.+ ....++.++|.++...|+
T Consensus 77 ~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~----------------- 133 (217)
T 2pl2_A 77 MVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNP------RYAPLHLQRGLVYALLGE----------------- 133 (217)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC-----------------
T ss_pred HHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCc------ccHHHHHHHHHHHHHcCC-----------------
Confidence 9999999999 999999999999998866 456788999999999999
Q ss_pred HHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 173 KVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 173 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
+++|+..|++++++. ....++.++|.++...|++++|+..|++++++.+... .++.++|.++..
T Consensus 134 ---~~~A~~~~~~al~~~-------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~------~~~~~la~~~~~ 197 (217)
T 2pl2_A 134 ---RDKAEASLKQALALE-------DTPEIRSALAELYLSMGRLDEALAQYAKALEQAPKDL------DLRVRYASALLL 197 (217)
T ss_dssp ---HHHHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHTC
T ss_pred ---hHHHHHHHHHHHhcc-------cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHH
Confidence 999999999999874 2356788999999999999999999999998765443 378889999999
Q ss_pred hCCHHHHHHHHHHHH
Q psy10738 253 LGEYQAASEHYKRTL 267 (609)
Q Consensus 253 ~g~~~~A~~~~~~al 267 (609)
.|++++|+.+++++.
T Consensus 198 ~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 198 KGKAEEAARAAALEH 212 (217)
T ss_dssp ---------------
T ss_pred ccCHHHHHHHHHHHh
Confidence 999999998888754
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.85 E-value=8.4e-21 Score=180.93 Aligned_cols=196 Identities=17% Similarity=0.144 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.+++.+|.++...|++++|+..+++++.. .|....++..+|.++...|++++|+.++++++++.+ ...
T Consensus 6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~ 73 (217)
T 2pl2_A 6 QNPLRLGVQLYALGRYDAALTLFERALKE------NPQDPEALYWLARTQLKLGLVNPALENGKTLVARTP------RYL 73 (217)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTT------SSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CcH
Confidence 47899999999999999999999999998 888899999999999999999999999999999876 556
Q ss_pred HHHHHHHHHHHHc-----------ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 141 RALYNLGNVYHAK-----------GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 141 ~~~~~lg~~~~~~-----------g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
.++.++|.++... |+ +++|+..+++++++ .+....++.++|.+
T Consensus 74 ~a~~~lg~~~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~al~~------~P~~~~~~~~lg~~ 127 (217)
T 2pl2_A 74 GGYMVLSEAYVALYRQAEDRERGKGY--------------------LEQALSVLKDAERV------NPRYAPLHLQRGLV 127 (217)
T ss_dssp HHHHHHHHHHHHHHHTCSSHHHHHHH--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhhhhcccccC--------------------HHHHHHHHHHHHHh------CcccHHHHHHHHHH
Confidence 7899999999999 88 99999999999988 44556788999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 210 YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT 289 (609)
Q Consensus 210 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 289 (609)
+...|++++|+.+|++++++. . + ..++.++|.++...|++++|+..|++++.+.+.. ..++..+|.+
T Consensus 128 ~~~~g~~~~A~~~~~~al~~~-~--~----~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~------~~~~~~la~~ 194 (217)
T 2pl2_A 128 YALLGERDKAEASLKQALALE-D--T----PEIRSALAELYLSMGRLDEALAQYAKALEQAPKD------LDLRVRYASA 194 (217)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-C--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcc-c--c----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------hHHHHHHHHH
Confidence 999999999999999999986 2 2 2378899999999999999999999999887653 6788899999
Q ss_pred HHHhCCHHHHHHHHHHHH
Q psy10738 290 YTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 290 ~~~~g~~~~A~~~~~~al 307 (609)
+...|++++|+.+++++-
T Consensus 195 ~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 195 LLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HTC---------------
T ss_pred HHHccCHHHHHHHHHHHh
Confidence 999999999999888754
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=175.45 Aligned_cols=256 Identities=19% Similarity=0.189 Sum_probs=202.3
Q ss_pred HhcCChHHHHHHHHHHHHhC----CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHH
Q psy10738 33 CKAGDCRAGVAFFQAAIQAG----TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNL 106 (609)
Q Consensus 33 ~~~g~~~~A~~~~~~al~~~----~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~l 106 (609)
...|++++|+.+|+++++.. ..+....+.++..+|.+|...|++++|+.++++++.+.... ++.+..+.++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 45678888888888888753 12334467899999999999999999999999999998887 7778889999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
|.+|...|++++|+.++.+++.+.... .+.+....++.++|.+|...|+ +++|+.+++
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~ 151 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGK--------------------AEEVEYYYR 151 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTC--------------------HHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHH
Confidence 999999999999999999999998776 3346788999999999999999 999999999
Q ss_pred HHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 185 QNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD---KAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 185 ~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
+++.+.... .+.+....++.++|.+|...|++++|+.++++++.+.+.... .......+..++..+...+.+..+
T Consensus 152 ~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 231 (283)
T 3edt_B 152 RALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDS 231 (283)
T ss_dssp HHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHH
Confidence 999998776 446778899999999999999999999999999998776321 111123556666666655554444
Q ss_pred HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 260 SEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309 (609)
Q Consensus 260 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 309 (609)
.. +..+........ +......++..+|.+|...|++++|+.++++++++
T Consensus 232 ~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 232 AP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp ------------CCCCCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 33 444444444433 45667889999999999999999999999999864
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.84 E-value=6.1e-19 Score=189.66 Aligned_cols=302 Identities=17% Similarity=0.161 Sum_probs=187.9
Q ss_pred hhhhhhHhhh----cCCCcchhHHHHHHH----------HHHHHHh----cCChHHHHHHHHHHHHhCCcchhHHHHHHH
Q psy10738 3 VGNISSSDSQ----SGGADGGNMCLELAL----------EGERLCK----AGDCRAGVAFFQAAIQAGTDDLRTLSAIYS 64 (609)
Q Consensus 3 l~~Lg~~~~~----~g~~~~a~~~~~l~~----------~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~a~~~~ 64 (609)
+..||.++.. .+++++|..++..+. .|..+.. .+++++|+.+|+++.+.+ + ..+++
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~----~~a~~ 115 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--L----PQAQQ 115 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHH
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--C----HHHHH
Confidence 3456666665 566666666555433 2666666 667777777777766543 2 23556
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 65 QLGNAYFY----LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 65 ~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~ 136 (609)
.+|.+|.. .+++++|+.+|+++.+. ....+++.+|.+|.. .+++++|+.+|+++++. +
T Consensus 116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~----~-- 181 (490)
T 2xm6_A 116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ----G-- 181 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----T--
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----C--
Confidence 66666666 56666666666666543 234555666666665 55666666666665542 1
Q ss_pred HHHHHHHHHHHHHHHH----cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh----------------
Q psy10738 137 LSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT---------------- 196 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~---------------- 196 (609)
...+++.+|.+|.. .++ +++|+.+|+++.+. ++.
T Consensus 182 --~~~a~~~Lg~~y~~g~g~~~~--------------------~~~A~~~~~~a~~~----~~~~a~~~lg~~y~~g~g~ 235 (490)
T 2xm6_A 182 --NVWSCNQLGYMYSRGLGVERN--------------------DAISAQWYRKSATS----GDELGQLHLADMYYFGIGV 235 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCC--------------------HHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSS
T ss_pred --CHHHHHHHHHHHhcCCCCCcC--------------------HHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCC
Confidence 13345555555554 444 44555544444321 110
Q ss_pred ----------------HHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh---
Q psy10738 197 ----------------AAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--- 253 (609)
Q Consensus 197 ----------------~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--- 253 (609)
.....++.++|.+|.. .+++++|+.+|+++.+. ++ ..+++.+|.+|...
T Consensus 236 ~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~~~~g 307 (490)
T 2xm6_A 236 TQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GN----SDGQYYLAHLYDKGAEG 307 (490)
T ss_dssp CCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TC----HHHHHHHHHHHHHCBTT
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CC----HHHHHHHHHHHHcCCCC
Confidence 0112355566666666 66666666666666532 11 23666777777776
Q ss_pred --CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Q psy10738 254 --GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR---DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGN 328 (609)
Q Consensus 254 --g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~ 328 (609)
+++++|+.+|+++.+. ++ ..+++.+|.+|...| ++++|+.+|+++++. ....+++.||.
T Consensus 308 ~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~ 371 (490)
T 2xm6_A 308 VAKNREQAISWYTKSAEQ----GD----ATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQFNLGN 371 (490)
T ss_dssp BCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHHhc----CC----HHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHHHHHH
Confidence 7777777777777653 11 457778888887765 778888888887754 13568889999
Q ss_pred HHHH----cCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH----cCCCCCCCCC
Q psy10738 329 AHAA----RGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA----LGMSTNDLSP 382 (609)
Q Consensus 329 ~~~~----~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~----~g~~~~al~~ 382 (609)
+|.. .+++++|+.+|+++++. ....++.+|+.+|.. .++...|..+
T Consensus 372 ~y~~g~g~~~~~~~A~~~~~~A~~~--------~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 425 (490)
T 2xm6_A 372 ALLQGKGVKKDEQQAAIWMRKAAEQ--------GLSAAQVQLGEIYYYGLGVERDYVQAWAW 425 (490)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred HHHcCCCCCCCHHHHHHHHHHHHhC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9998 89999999999998872 246788999999987 5665555443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.83 E-value=8.2e-20 Score=179.64 Aligned_cols=255 Identities=15% Similarity=-0.039 Sum_probs=204.1
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
+...|++++|+..|+++++..+.++...+.++..+|.++...|++++|+.++++++.. .+....++..+|.++.
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~ 88 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLT 88 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHH
Confidence 3446889999999999999876666667889999999999999999999999999998 6677889999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
..|++++|+.++++++.+.+ ....++..+|.+|...|+ +++|+.++++++.+.+
T Consensus 89 ~~~~~~~A~~~~~~al~~~~------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~a~~~~~ 142 (275)
T 1xnf_A 89 QAGNFDAAYEAFDSVLELDP------TYNYAHLNRGIALYYGGR--------------------DKLAQDDLLAFYQDDP 142 (275)
T ss_dssp HTTCHHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHCT
T ss_pred HccCHHHHHHHHHHHHhcCc------cccHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHhCC
Confidence 99999999999999999865 335789999999999999 9999999999998632
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
. . ......++ ++...|++++|+.++.+++...+... ....++.++...+++++|+..+.+++...+
T Consensus 143 ~---~---~~~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 208 (275)
T 1xnf_A 143 N---D---PFRSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKEQ-------WGWNIVEFYLGNISEQTLMERLKADATDNT 208 (275)
T ss_dssp T---C---HHHHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCCS-------THHHHHHHHTTSSCHHHHHHHHHHHCCSHH
T ss_pred C---C---hHHHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcch-------HHHHHHHHHHHhcCHHHHHHHHHHHhcccc
Confidence 2 1 12222333 34667999999999999988655432 234577788888999999999999887766
Q ss_pred HcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHH
Q psy10738 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFA 343 (609)
Q Consensus 272 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~ 343 (609)
.. ......++..+|.+|...|++++|+.++++++.+.+.. +...+.++..+|++++|+..+
T Consensus 209 ~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~---------~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 209 SL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN---------FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT---------CHHHHHHHHHHHHHHHC----
T ss_pred cc--cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh---------HHHHHHHHHHHHHHHhhHHHH
Confidence 42 12236789999999999999999999999999775421 223466788888999888876
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.3e-18 Score=185.15 Aligned_cols=274 Identities=18% Similarity=0.228 Sum_probs=189.1
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCh
Q psy10738 25 LALEGERLCK----AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY----LGDYQKAMQYHKQDLTLARNMEDK 96 (609)
Q Consensus 25 l~~~g~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~d~ 96 (609)
....|..+.. .+++++|+.+|+++.+.+ + +.+++.+|.+|.. .+++++|+.+|+++.+.
T Consensus 42 ~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~------- 108 (490)
T 2xm6_A 42 QLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--Y----TPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK------- 108 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-------
Confidence 3445888888 899999999999999863 3 4488999999999 99999999999999764
Q ss_pred hhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cccccccCCCCCCCCC
Q psy10738 97 LGEAKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEY 168 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~ 168 (609)
....+++.+|.+|.. .+++++|+.+|+++.+. ....+++++|.+|.. .++
T Consensus 109 -~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~d------------- 166 (490)
T 2xm6_A 109 -GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--------GRDSGQQSMGDAYFEGDGVTRD------------- 166 (490)
T ss_dssp -TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCC-------------
T ss_pred -CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCC-------------
Confidence 356788999999999 89999999999998764 236789999999998 788
Q ss_pred chHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANS 244 (609)
Q Consensus 169 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 244 (609)
+++|+.+|+++.+. ++ ..++.++|.+|.. .+++++|+.+|+++.+. ++ ..+++
T Consensus 167 -------~~~A~~~~~~a~~~----~~----~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~----~~a~~ 223 (490)
T 2xm6_A 167 -------YVMAREWYSKAAEQ----GN----VWSCNQLGYMYSRGLGVERNDAISAQWYRKSATS----GD----ELGQL 223 (490)
T ss_dssp -------HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHH
T ss_pred -------HHHHHHHHHHHHHC----CC----HHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHC----CC----HHHHH
Confidence 99999999999864 22 4678888998888 88899999988888653 11 12455
Q ss_pred HHHHHHHH----hCCHHHHHHHHHHHHHHHHHc----------------CCc------------HHHHHHHHHHHHHHHH
Q psy10738 245 NLGNSHIF----LGEYQAASEHYKRTLVLAQDL----------------GDR------------AVEAQACYSLGNTYTL 292 (609)
Q Consensus 245 ~la~~~~~----~g~~~~A~~~~~~al~~~~~~----------------~~~------------~~~~~~~~~la~~~~~ 292 (609)
.+|.+|.. .+++++|+.+|+++++..... ++. .....+++.+|.+|..
T Consensus 224 ~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~ 303 (490)
T 2xm6_A 224 HLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDK 303 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc
Confidence 55555554 555556655555554321000 000 0012344445555554
Q ss_pred h-----CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC---ChHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy10738 293 L-----RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG---NHEKALYFATKHLEISKQLGDPLGQVTAQM 364 (609)
Q Consensus 293 ~-----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g---~~~~A~~~~~~al~l~~~~~~~~~~~~a~~ 364 (609)
. +++++|+.+|+++.+. + ...++..+|.+|...| ++++|+.+|+++++. ....++.
T Consensus 304 ~~~g~~~~~~~A~~~~~~a~~~----~----~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--------~~~~a~~ 367 (490)
T 2xm6_A 304 GAEGVAKNREQAISWYTKSAEQ----G----DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--------GEKAAQF 367 (490)
T ss_dssp CBTTBCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--------TCHHHHH
T ss_pred CCCCCcCCHHHHHHHHHHHHhc----C----CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--------CCHHHHH
Confidence 4 4555555555554432 1 1235556666666544 556666666666542 2355666
Q ss_pred HHHHHHHH
Q psy10738 365 NVTDLRKA 372 (609)
Q Consensus 365 ~la~l~~~ 372 (609)
.|+.+|..
T Consensus 368 ~Lg~~y~~ 375 (490)
T 2xm6_A 368 NLGNALLQ 375 (490)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 77777665
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=170.55 Aligned_cols=223 Identities=20% Similarity=0.337 Sum_probs=195.6
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d 135 (609)
+.+++.+|.++...|++++|+.+|+++++ +....+++.+|.+|.. .|++++|+.+|+++++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--------~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----- 72 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--------LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----- 72 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT-----
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--------CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC-----
Confidence 44889999999999999999999999987 2335789999999999 999999999999998762
Q ss_pred cHHHHHHHHHHHHHHHH----cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy10738 136 KLSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYY 211 (609)
Q Consensus 136 ~~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~ 211 (609)
...+++++|.+|.. .++ +++|+.+|+++++. + ...++.++|.+|.
T Consensus 73 ---~~~a~~~lg~~~~~g~~~~~~--------------------~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 73 ---YSNGCHLLGNLYYSGQGVSQN--------------------TNKALQYYSKACDL----K----YAEGCASLGGIYH 121 (273)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCC--------------------HHHHHHHHHHHHHT----T----CHHHHHHHHHHHH
T ss_pred ---CHHHHHHHHHHHhCCCCcccC--------------------HHHHHHHHHHHHHc----C----CccHHHHHHHHHH
Confidence 46789999999999 999 99999999999875 2 3568999999999
Q ss_pred H----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 212 L----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQAC 283 (609)
Q Consensus 212 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 283 (609)
. .|++++|+.+|+++++.. + ..++.++|.+|.. .+++++|+.+|+++++.. ...++
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~~----~----~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--------~~~a~ 185 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDLN----D----GDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK--------DSPGC 185 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT----C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--------CHHHH
T ss_pred cCCCcccCHHHHHHHHHHHHhcC----c----HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--------CHHHH
Confidence 9 999999999999998752 2 3478899999999 999999999999998752 25688
Q ss_pred HHHHHHHHH----hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHH
Q psy10738 284 YSLGNTYTL----LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA----RGNHEKALYFATKHLEIS 350 (609)
Q Consensus 284 ~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~l~ 350 (609)
+.+|.+|.. .+++++|+.+++++++.. ...++..+|.+|.. .|++++|+.+|++++++.
T Consensus 186 ~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 186 FNAGNMYHHGEGATKNFKEALARYSKACELE--------NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--------CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCCCCccHHHHHHHHHHHHhCC--------CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 999999999 999999999999998752 15689999999999 999999999999999864
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=6e-18 Score=166.85 Aligned_cols=223 Identities=20% Similarity=0.318 Sum_probs=194.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY----LGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
.+...|..+...|++++|+.+|+++++ +++. .+++.+|.+|.. .+++++|+.+|+++++. . .
T Consensus 8 a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~----~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~------~--~ 73 (273)
T 1ouv_A 8 ELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN----SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------N--Y 73 (273)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH----HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT------T--C
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH----HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHC------C--C
Confidence 445679999999999999999999999 4443 478999999999 99999999999999876 2 5
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cccccccCCCCCCCCCchH
Q psy10738 100 AKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 100 ~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~ 171 (609)
..+++.+|.+|.. .+++++|+.+|+++++. ....+++++|.+|.. .++
T Consensus 74 ~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~lg~~~~~~~~~~~~---------------- 129 (273)
T 1ouv_A 74 SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVVTRD---------------- 129 (273)
T ss_dssp HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSSCCC----------------
T ss_pred HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc--------CCccHHHHHHHHHHcCCCcccC----------------
Confidence 7889999999999 99999999999999875 235689999999999 999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 247 (609)
+++|+.+|+++++. + ...++.++|.+|.. .+++++|+.+++++++. ++ ..++.++|
T Consensus 130 ----~~~A~~~~~~a~~~----~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~----~~----~~a~~~lg 189 (273)
T 1ouv_A 130 ----FKKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL----KD----SPGCFNAG 189 (273)
T ss_dssp ----HHHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHH
T ss_pred ----HHHHHHHHHHHHhc----C----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC----CC----HHHHHHHH
Confidence 99999999999875 2 24578999999999 99999999999999875 22 34889999
Q ss_pred HHHHH----hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHH
Q psy10738 248 NSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 248 ~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~ 312 (609)
.+|.. .+++++|+.+|+++++.. + ..+++.+|.+|.. .+++++|+.+|+++++..+.
T Consensus 190 ~~~~~g~~~~~~~~~A~~~~~~a~~~~----~----~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~ 254 (273)
T 1ouv_A 190 NMYHHGEGATKNFKEALARYSKACELE----N----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 254 (273)
T ss_dssp HHHHHTCSSCCCHHHHHHHHHHHHHTT----C----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred HHHHcCCCCCccHHHHHHHHHHHHhCC----C----HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence 99999 999999999999998752 1 5688999999999 99999999999999987543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.80 E-value=2.5e-17 Score=154.11 Aligned_cols=195 Identities=21% Similarity=0.219 Sum_probs=172.6
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
++..|++++|...++.... ++...+.++..+|.++...|++++|+.++++++.+++..++.+..+.++.++|.++.
T Consensus 2 ~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 77 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLA----HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVER 77 (203)
T ss_dssp -----CHHHHHHHHHHHHT----STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence 4568999999996555433 233357799999999999999999999999999999999999999999999999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLND-KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
..|++++|+.++++++.+.+..++ +...+.++.++|.++...|+ +++|+.++++++.+.
T Consensus 78 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~ 137 (203)
T 3gw4_A 78 MAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGD--------------------LAGARQEYEKSLVYA 137 (203)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHHHH
Confidence 999999999999999999998884 44788999999999999999 999999999999999
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
+..++....+.++.++|.++...|++++|+.++++++.+....++....+.+..+++.+.
T Consensus 138 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 138 QQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 999998888999999999999999999999999999999999999888888887777653
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=99.79 E-value=2.4e-17 Score=154.25 Aligned_cols=194 Identities=21% Similarity=0.207 Sum_probs=137.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 111 KVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 111 ~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
...|++++|...++.. .+++...+.++..+|.++...|+ +++|+.++++++.+.
T Consensus 3 ~~~g~~~~A~~~~~~~------~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~al~~~ 56 (203)
T 3gw4_A 3 FEAHDYALAERQAQAL------LAHPATASGARFMLGYVYAFMDR--------------------FDEARASFQALQQQA 56 (203)
T ss_dssp ----CHHHHHHHHHHH------HTSTTTHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHh------cCChHHHHHHHHHHHHHHHHhCc--------------------HHHHHHHHHHHHHHH
Confidence 3467777777744332 12333556777777777777777 777777777777777
Q ss_pred HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
+..++.+..+.++.++|.++...|++++|+.++++++.+.+..+ ++.....++.++|.++...|++++|+.++++++.+
T Consensus 57 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 136 (203)
T 3gw4_A 57 QKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVY 136 (203)
T ss_dssp HTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 77777777777777777777777777777777777777777766 34456667777777777777777777777777777
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH 330 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~ 330 (609)
.+..++....+.++..+|.++...|++++|+.++++++.+....++......+...++.+.
T Consensus 137 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 197 (203)
T 3gw4_A 137 AQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELEDSEAVNELMTRLNGLE 197 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcccchh
Confidence 7777776666777777777777777777777777777777777777776666666666543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=5.2e-19 Score=170.47 Aligned_cols=201 Identities=19% Similarity=0.209 Sum_probs=121.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 25 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 94 (243)
T 2q7f_A 25 TGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDA----IPYINFANLLSSVNELERALAFYDKALEL------DSSAATAY 94 (243)
T ss_dssp -----------------CCTTHHHHHTTCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCcchHHH
Confidence 344557777777777777777777777766653 36667777777777777777777777766 44556677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...|++++|+.+++++++..+ ....++..+|.++...|+ +++|+.++
T Consensus 95 ~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~ 148 (243)
T 2q7f_A 95 YGAGNVYVVKEMYKEAKDMFEKALRAGM------ENGDLFYMLGTVLVKLEQ--------------------PKLALPYL 148 (243)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHTC------CSHHHHHHHHHHHHHTSC--------------------HHHHHHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcc--------------------HHHHHHHH
Confidence 7777777777777777777777766543 224466677777777777 77777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHY 263 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 263 (609)
++++... +....++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++++|+.++
T Consensus 149 ~~~~~~~------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~ 216 (243)
T 2q7f_A 149 QRAVELN------ENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENREKALEML 216 (243)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCTTHHHHHH
T ss_pred HHHHHhC------CccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHccCHHHHHHHH
Confidence 7766652 2223456666777777777777777777666653321 125666666666677777777766
Q ss_pred HHHHHHHHH
Q psy10738 264 KRTLVLAQD 272 (609)
Q Consensus 264 ~~al~~~~~ 272 (609)
++++.+.+.
T Consensus 217 ~~~~~~~p~ 225 (243)
T 2q7f_A 217 DKAIDIQPD 225 (243)
T ss_dssp HHHHHHCTT
T ss_pred HHHHccCcc
Confidence 666665543
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=3e-19 Score=172.13 Aligned_cols=221 Identities=21% Similarity=0.198 Sum_probs=163.6
Q ss_pred hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 57 RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 57 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~ 136 (609)
...+..++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+
T Consensus 20 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----- 88 (243)
T 2q7f_A 20 HMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE------NKEDAIPYINFANLLSSVNELERALAFYDKALELDS----- 88 (243)
T ss_dssp ----------------------CCTTHHHHHTT------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-----
T ss_pred hhHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----
Confidence 345678899999999999999999999999886 666788999999999999999999999999998755
Q ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH
Q psy10738 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 216 (609)
....++..+|.++...|+ +++|+.+++++++.. +....++..+|.++...|++
T Consensus 89 -~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~ 141 (243)
T 2q7f_A 89 -SAATAYYGAGNVYVVKEM--------------------YKEAKDMFEKALRAG------MENGDLFYMLGTVLVKLEQP 141 (243)
T ss_dssp -TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHT------CCSHHHHHHHHHHHHHTSCH
T ss_pred -cchHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhccH
Confidence 346788999999999999 999999999998873 22345788999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH
Q psy10738 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 296 (609)
++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++
T Consensus 142 ~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~ 209 (243)
T 2q7f_A 142 KLALPYLQRAVELNEND------TEARFQFGMCLANEGMLDEALSQFAAVTEQDPGH------ADAFYNAGVTYAYKENR 209 (243)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCT
T ss_pred HHHHHHHHHHHHhCCcc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHccCH
Confidence 99999999999875432 2378899999999999999999999998875542 56889999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 297 PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 297 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
++|+.++++++.+.+.. ..++..++.+....
T Consensus 210 ~~A~~~~~~~~~~~p~~------~~~~~~~~~l~~~~ 240 (243)
T 2q7f_A 210 EKALEMLDKAIDIQPDH------MLALHAKKLLGHHH 240 (243)
T ss_dssp THHHHHHHHHHHHCTTC------HHHHHHHTC-----
T ss_pred HHHHHHHHHHHccCcch------HHHHHHHHHHHhhc
Confidence 99999999999876542 23555555444433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.78 E-value=5.1e-18 Score=169.26 Aligned_cols=256 Identities=10% Similarity=-0.011 Sum_probs=205.0
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
....++..|+|.+|+..+++....+|++ .......++.+|..+|+++.|+..++.. .+....++..++
T Consensus 5 ~~~~~~~~g~y~~ai~~~~~~~~~~p~~---~~e~~~~l~r~yi~~g~~~~al~~~~~~---------~~~~~~a~~~la 72 (291)
T 3mkr_A 5 DVKNAFYIGSYQQCINEAQRVKPSSPER---DVERDVFLYRAYLAQRKYGVVLDEIKPS---------SAPELQAVRMFA 72 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHSCCCSHHH---HHHHHHHHHHHHHHTTCHHHHHHHSCTT---------SCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCchh---hHHHHHHHHHHHHHCCCHHHHHHHhccc---------CChhHHHHHHHH
Confidence 3567889999999999998876666554 2346677899999999999999866541 233578889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
..+...|++++|+..+++.+... ..+....+++.+|.++...|+ +++|+..+++
T Consensus 73 ~~~~~~~~~~~A~~~l~~ll~~~----~~P~~~~~~~~la~~~~~~g~--------------------~~~Al~~l~~-- 126 (291)
T 3mkr_A 73 EYLASHSRRDAIVAELDREMSRS----VDVTNTTFLLMAASIYFYDQN--------------------PDAALRTLHQ-- 126 (291)
T ss_dssp HHHHCSTTHHHHHHHHHHHHHSC----CCCSCHHHHHHHHHHHHHTTC--------------------HHHHHHHHTT--
T ss_pred HHHcCCCcHHHHHHHHHHHHhcc----cCCCCHHHHHHHHHHHHHCCC--------------------HHHHHHHHhC--
Confidence 99999999999999999876531 011345689999999999999 9999999887
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH----HHHHHhCCHHHHHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG----NSHIFLGEYQAASEHY 263 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la----~~~~~~g~~~~A~~~~ 263 (609)
+ ....++..+|.++..+|++++|+..++++++..+. . ....++ .++...|++++|+..|
T Consensus 127 ------~---~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~--~------~~~~l~~a~~~l~~~~~~~~eA~~~~ 189 (291)
T 3mkr_A 127 ------G---DSLECMAMTVQILLKLDRLDLARKELKKMQDQDED--A------TLTQLATAWVSLAAGGEKLQDAYYIF 189 (291)
T ss_dssp ------C---CSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT--C------HHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred ------C---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC--c------HHHHHHHHHHHHHhCchHHHHHHHHH
Confidence 1 23458889999999999999999999999887432 1 222232 2233458999999999
Q ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH-HHHH
Q psy10738 264 KRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK-ALYF 342 (609)
Q Consensus 264 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~~ 342 (609)
++++...+. ...+++.+|.++...|++++|+.++++++.+.+. ...++.++|.++...|++.+ +..+
T Consensus 190 ~~~l~~~p~------~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~------~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 190 QEMADKCSP------TLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSG------HPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp HHHHHHSCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHhCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 999987553 2678999999999999999999999999988655 35589999999999999976 5689
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
+++++++.
T Consensus 258 ~~~~~~~~ 265 (291)
T 3mkr_A 258 LSQLKDAH 265 (291)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99998876
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1e-18 Score=186.76 Aligned_cols=216 Identities=16% Similarity=0.184 Sum_probs=182.2
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY-QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~-~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~ 116 (609)
+++++..++++....|.+ +.+++.+|.++...|++ ++|+.+|++++++ .+....++..+|.+|...|++
T Consensus 84 ~~~al~~l~~~~~~~~~~----a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~ 153 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVE----AQALMLKGKALNVTPDYSPEAEVLLSKAVKL------EPELVEAWNQLGEVYWKKGDV 153 (474)
T ss_dssp HHHHHHHHHHHHTTCCCC----HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHhccCchh----HHHHHHHHHHHHhccccHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHcCCH
Confidence 566667777766666655 55899999999999999 9999999999999 777889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc---------ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK---------GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 117 ~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~---------g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
++|+.+|++++++.+ . ..++.++|.+|... |+ +++|+.+|++++
T Consensus 154 ~~A~~~~~~al~~~p------~-~~~~~~lg~~~~~~~~~~~~~~~g~--------------------~~~A~~~~~~al 206 (474)
T 4abn_A 154 TSAHTCFSGALTHCK------N-KVSLQNLSMVLRQLQTDSGDEHSRH--------------------VMDSVRQAKLAV 206 (474)
T ss_dssp HHHHHHHHHHHTTCC------C-HHHHHHHHHHHTTCCCSCHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCC------C-HHHHHHHHHHHHHhccCChhhhhhh--------------------HHHHHHHHHHHH
Confidence 999999999998754 2 47999999999999 88 999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLL--------GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++ .+....++.++|.+|... |++++|+.+|++++++.+.. .....+++++|.+|...|++++|
T Consensus 207 ~~------~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 207 QM------DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HH------CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred Hh------CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHH
Confidence 88 344567899999999999 99999999999999885510 01234888999999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLR 305 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 305 (609)
+.+|++++.+.+.. ..++..++.++...|++++|+..+.+
T Consensus 278 ~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 278 LEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999998887653 56788888888888888888776543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.78 E-value=4.8e-18 Score=156.83 Aligned_cols=169 Identities=23% Similarity=0.296 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+.+|+.+|.+|...|++++|+.+|++++++ .|....++..+|.+|...|++++|+..+.+++...+ ..
T Consensus 5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~------~~ 72 (184)
T 3vtx_A 5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKA------DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDT------TS 72 (184)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc------hh
Confidence 458999999999999999999999999999 788899999999999999999999999999988765 45
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..++..+|.++...++ ++.|...+.+++.+ .+....++..+|.+|..+|++++|
T Consensus 73 ~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~a~~~------~~~~~~~~~~lg~~~~~~g~~~~A 126 (184)
T 3vtx_A 73 AEAYYILGSANFMIDE--------------------KQAAIDALQRAIAL------NTVYADAYYKLGLVYDSMGEHDKA 126 (184)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh------CccchHHHHHHHHHHHHhCCchhH
Confidence 6788899999999999 99999999999887 344467889999999999999999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
+.+|++++++.+... .++.++|.+|..+|++++|+.+|++++++.+.
T Consensus 127 ~~~~~~~l~~~p~~~------~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 127 IEAYEKTISIKPGFI------RAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHHHHHhcchhh------hHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 999999998865433 38999999999999999999999999998775
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.77 E-value=5.3e-18 Score=164.62 Aligned_cols=210 Identities=18% Similarity=0.142 Sum_probs=178.1
Q ss_pred chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 55 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
++...+.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+
T Consensus 32 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~--- 102 (252)
T 2ho1_A 32 GRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEI------DPSSADAHAALAVVFQTEMEPKLADEEYRKALASDS--- 102 (252)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCTGGGHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---
T ss_pred chHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc---
Confidence 44445778999999999999999999999999988 566788999999999999999999999999998755
Q ss_pred CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 135 d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
....++..+|.+|...|+ +++|+.++++++. .+..+....++..+|.++...|
T Consensus 103 ---~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g 155 (252)
T 2ho1_A 103 ---RNARVLNNYGGFLYEQKR--------------------YEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMK 155 (252)
T ss_dssp ---TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTT
T ss_pred ---CcHHHHHHHHHHHHHHhH--------------------HHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcC
Confidence 345688999999999999 9999999999887 2234556778999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhC
Q psy10738 215 NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 215 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 294 (609)
++++|+.++++++...+.. ..++..+|.++...|++++|+.++++++...+. ...++..++.++...|
T Consensus 156 ~~~~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~~~~~~~~~g 223 (252)
T 2ho1_A 156 KPAQAKEYFEKSLRLNRNQ------PSVALEMADLLYKEREYVPARQYYDLFAQGGGQ------NARSLLLGIRLAKVFE 223 (252)
T ss_dssp CHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCC------CHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHhcCccc------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC------cHHHHHHHHHHHHHcc
Confidence 9999999999998875432 347889999999999999999999998875442 2557888999999999
Q ss_pred CHHHHHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 295 ~~~~A~~~~~~al~~~~~ 312 (609)
++++|..++++++...+.
T Consensus 224 ~~~~A~~~~~~~~~~~p~ 241 (252)
T 2ho1_A 224 DRDTAASYGLQLKRLYPG 241 (252)
T ss_dssp CHHHHHHHHHHHHHHCTT
T ss_pred CHHHHHHHHHHHHHHCCC
Confidence 999999999999877554
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.77 E-value=1.7e-17 Score=153.03 Aligned_cols=167 Identities=21% Similarity=0.324 Sum_probs=152.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|.++...|++++|+..|+++++.+|++.. ++..+|.+|...|++++|+..+.+++.. .+....++
T Consensus 7 iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~la~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~ 76 (184)
T 3vtx_A 7 IYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE----TLLKLGKTYMDIGLPNDAIESLKKFVVL------DTTSAEAY 76 (184)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHhc------CchhHHHH
Confidence 3445699999999999999999999999999854 8999999999999999999999999988 77778899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...++++.|...+.+++.+.+ ....++..+|.+|...|+ +++|+.+|
T Consensus 77 ~~~~~~~~~~~~~~~a~~~~~~a~~~~~------~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~ 130 (184)
T 3vtx_A 77 YILGSANFMIDEKQAAIDALQRAIALNT------VYADAYYKLGLVYDSMGE--------------------HDKAIEAY 130 (184)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCc------cchHHHHHHHHHHHHhCC--------------------chhHHHHH
Confidence 9999999999999999999999998866 456789999999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
++++++ .+....++.++|.+|..+|++++|+.+|++++++.+.
T Consensus 131 ~~~l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~ 173 (184)
T 3vtx_A 131 EKTISI------KPGFIRAYQSIGLAYEGKGLRDEAVKYFKKALEKEEK 173 (184)
T ss_dssp HHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTHH
T ss_pred HHHHHh------cchhhhHHHHHHHHHHHCCCHHHHHHHHHHHHhCCcc
Confidence 999988 4455779999999999999999999999999998665
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.76 E-value=1.9e-16 Score=166.84 Aligned_cols=232 Identities=11% Similarity=0.112 Sum_probs=210.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcch-------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDL-------------RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLAR 91 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 91 (609)
.+.+|..+...|+|++|++.|.++++..+... .....++..+|.+|...|++++|++++.+++....
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~ 86 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMM 86 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 45578899999999999999999999866422 23456789999999999999999999999999998
Q ss_pred HcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchH
Q psy10738 92 NMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 92 ~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~ 171 (609)
..++......+...+|.++...|++++|+.++++++.+....++....+.++.++|.+|...|+
T Consensus 87 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~---------------- 150 (434)
T 4b4t_Q 87 QFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQ---------------- 150 (434)
T ss_dssp TSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTC----------------
T ss_pred HccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccC----------------
Confidence 8877777778889999999999999999999999999999999888899999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK-AAERRANSNLGNSH 250 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~ 250 (609)
|.+|+.++++++.......+.+....++..+|.+|...|++++|..++++++.+.....++ ...+..+..+|.++
T Consensus 151 ----~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 151 ----YKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp ----HHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 9999999999999998888889999999999999999999999999999999999887765 45678899999999
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 251 IFLGEYQAASEHYKRTLVLAQDLGDR 276 (609)
Q Consensus 251 ~~~g~~~~A~~~~~~al~~~~~~~~~ 276 (609)
...|+|++|..+|.+++......+..
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~~~~~ 252 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHNLTTH 252 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTTTS
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhh
Confidence 99999999999999999998877543
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.76 E-value=3.5e-17 Score=155.26 Aligned_cols=205 Identities=18% Similarity=0.133 Sum_probs=173.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+ ..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~------~~ 75 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKS------DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP------DS 75 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh------CccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC------CC
Confidence 568899999999999999999999999988 566678999999999999999999999999998755 34
Q ss_pred HHHHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 140 GRALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 140 ~~~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
..++..+|.++... |+ +++|+.++++++. .+..+....++.++|.++...|++++
T Consensus 76 ~~~~~~l~~~~~~~~~~--------------------~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~ 131 (225)
T 2vq2_A 76 AEINNNYGWFLCGRLNR--------------------PAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQFGL 131 (225)
T ss_dssp HHHHHHHHHHHHTTTCC--------------------HHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhcCc--------------------HHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCCHHH
Confidence 56889999999999 99 9999999999887 22344456788999999999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HcCCcHHHHHHHHHHHHHHHHhCCHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ-DLGDRAVEAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~ 297 (609)
|+.+++++++..+.. ..++..+|.++...|++++|+.++++++...+ .. ..++..++.++...|+++
T Consensus 132 A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~ 199 (225)
T 2vq2_A 132 AEAYLKRSLAAQPQF------PPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQ------ADDLLLGWKIAKALGNAQ 199 (225)
T ss_dssp HHHHHHHHHHHSTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhCCCC------chHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC------HHHHHHHHHHHHhcCcHH
Confidence 999999998875432 23788999999999999999999999998765 32 445677888889999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10738 298 TAIDYHLRHLIIAQQ 312 (609)
Q Consensus 298 ~A~~~~~~al~~~~~ 312 (609)
+|..+++.+....+.
T Consensus 200 ~a~~~~~~~~~~~p~ 214 (225)
T 2vq2_A 200 AAYEYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHhCCC
Confidence 999999888766443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.76 E-value=1.4e-16 Score=159.03 Aligned_cols=195 Identities=11% Similarity=0.013 Sum_probs=171.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHH--HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTL--SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..+...+..++..|+|++|+..++++++..+..+... ...+..+|.++...|++++|+.++++++.+.....+....+
T Consensus 76 ~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~ 155 (293)
T 3u3w_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHH
Confidence 3444458889999999999999999999877655432 44566799999999999999999999999766666666678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
.++.++|.+|...|++++|+.+|++++++.... .+....+.+++++|.+|...|+ |++|
T Consensus 156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~--------------------y~~A 215 (293)
T 3u3w_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR--------------------YEES 215 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTC--------------------HHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhH--------------------HHHH
Confidence 899999999999999999999999999999887 6677888899999999999999 9999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCChH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG-NFKQAIYYHQERLKIAREFGDKA 237 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 237 (609)
+.++++++++.+..++....+.++.++|.+|..+| .+++|+.++++|+.++...++..
T Consensus 216 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~ 274 (293)
T 3u3w_A 216 LYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 99999999999999888888999999999999999 57999999999999999877643
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.76 E-value=6.6e-17 Score=161.38 Aligned_cols=201 Identities=13% Similarity=0.033 Sum_probs=168.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
+.....+...+..+...|++++|+.++.++++..+...+.......++.+|.++...|+ +
T Consensus 72 ~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 131 (293)
T 2qfc_A 72 IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVD--------------------Y 131 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSC--------------------H
T ss_pred hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCC--------------------H
Confidence 34455667788899999999999999999888654333333455667789999999999 9
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH-HHHHHHHHHHHHHhCC
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAE-RRANSNLGNSHIFLGE 255 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-~~~~~~la~~~~~~g~ 255 (609)
++|+.++++++.+.....+....+.++.++|.+|...|++++|+.++++++++....++.... ..+++++|.+|..+|+
T Consensus 132 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~ 211 (293)
T 2qfc_A 132 EYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSR 211 (293)
T ss_dssp HHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhh
Confidence 999999999998776666666678899999999999999999999999999988877654433 3789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHHHHHHHhcchh
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA-IDYHLRHLIIAQQLMDRV 317 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al~~~~~~~~~~ 317 (609)
+++|+.++++++.+....++....+.+++++|.+|..+|++++| ..++++|+.+....++..
T Consensus 212 y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~ 274 (293)
T 2qfc_A 212 YEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHh
Confidence 99999999999999887777777788999999999999999999 888999999988876643
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.76 E-value=3.3e-17 Score=159.04 Aligned_cols=205 Identities=15% Similarity=0.047 Sum_probs=178.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~ 106 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSA----DAHAALAVVFQTEMEPKLADEEYRKALAS------DSRNAR 106 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHH
Confidence 34556679999999999999999999999998874 48899999999999999999999999988 566688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
++..+|.++...|++++|+.++++++. .+..+....++..+|.++...|+ +++|+.
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~~la~~~~~~g~--------------------~~~A~~ 162 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQ----DTLYPERSRVFENLGLVSLQMKK--------------------PAQAKE 162 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTT----CTTCTTHHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHh----CccCcccHHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 999999999999999999999999987 22334567899999999999999 999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
++++++... +....++..+|.++...|++++|+.++++++...+.. ..++..++.++...|++++|..
T Consensus 163 ~~~~~~~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~g~~~~A~~ 230 (252)
T 2ho1_A 163 YFEKSLRLN------RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQN------ARSLLLGIRLAKVFEDRDTAAS 230 (252)
T ss_dssp HHHHHHHHC------SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCC------HHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHhcC------cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc------HHHHHHHHHHHHHccCHHHHHH
Confidence 999998873 2235688999999999999999999999998754422 2378889999999999999999
Q ss_pred HHHHHHHHHHH
Q psy10738 262 HYKRTLVLAQD 272 (609)
Q Consensus 262 ~~~~al~~~~~ 272 (609)
++++++...+.
T Consensus 231 ~~~~~~~~~p~ 241 (252)
T 2ho1_A 231 YGLQLKRLYPG 241 (252)
T ss_dssp HHHHHHHHCTT
T ss_pred HHHHHHHHCCC
Confidence 99999887654
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.5e-17 Score=161.94 Aligned_cols=201 Identities=9% Similarity=-0.035 Sum_probs=172.8
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
....+...+..+...|+ |++|+.++.++++..+...........+..+|.++...|++++
T Consensus 74 ~~~~l~~~~~~~~~~~~--------------------y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (293)
T 2qfc_A 74 RKKQFKDQVIMLCKQKR--------------------YKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEY 133 (293)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHH
T ss_pred HHHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHH
Confidence 34456678888999999 9999999999887644322233455667889999999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHH-HHHHHHHHHHHHHHhCCHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAV-EAQACYSLGNTYTLLRDYP 297 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~ 297 (609)
|+.++++++.+.....+....+.++.++|.+|...|++++|+.+|++++.+.....+... ...+++++|.+|..+|+|+
T Consensus 134 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~ 213 (293)
T 2qfc_A 134 CILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYE 213 (293)
T ss_dssp HHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHH
Confidence 999999999887766666667789999999999999999999999999999887765433 3489999999999999999
Q ss_pred HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH-HHHHHHHHHHHHHcCCCchH
Q psy10738 298 TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA-LYFATKHLEISKQLGDPLGQ 359 (609)
Q Consensus 298 ~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A-~~~~~~al~l~~~~~~~~~~ 359 (609)
+|+.++++++.+....++....+.++..+|.+|..+|++++| ..++++|+.+++..++....
T Consensus 214 ~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~ 276 (293)
T 2qfc_A 214 ESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYK 276 (293)
T ss_dssp HHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhH
Confidence 999999999999988777778899999999999999999999 88899999999998876553
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.7e-18 Score=187.93 Aligned_cols=171 Identities=23% Similarity=0.299 Sum_probs=147.5
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+.+|+++|.+|..+|++++|+.+|++++++ .+..+.++.++|.+|..+|++++|+.+|++++++.+ .
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l------~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P------~ 75 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV------FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP------T 75 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------C
Confidence 4668899999999999999999999999988 777888999999999999999999999999998866 5
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
.+.+++++|.+|..+|+ +++|+.+|++++++ .+....++.++|.+|..+|++++
T Consensus 76 ~~~a~~nLg~~l~~~g~--------------------~~~A~~~~~kAl~l------~P~~~~a~~~Lg~~~~~~g~~~e 129 (723)
T 4gyw_A 76 FADAYSNMGNTLKEMQD--------------------VQGALQCYTRAIQI------NPAFADAHSNLASIHKDSGNIPE 129 (723)
T ss_dssp CHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHH
Confidence 56788999999999999 99999999999887 45557789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
|+.+|++++++.+... .++.++|.++..+|++++|++.+++++++.++.
T Consensus 130 Ai~~~~~Al~l~P~~~------~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 130 AIASYRTALKLKPDFP------DAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp HHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCh------HHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999998865443 388899999999999999999999998887653
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=3.5e-18 Score=182.74 Aligned_cols=219 Identities=16% Similarity=0.106 Sum_probs=184.4
Q ss_pred HHHHHHHHHHHHHHc-CChhhHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccc
Q psy10738 79 AMQYHKQDLTLARNM-EDKLGEAKSSGNLGNTLKVMGKY-DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156 (609)
Q Consensus 79 A~~~~~~al~~~~~~-~d~~~~~~a~~~lg~~~~~~g~~-~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~ 156 (609)
....+++++...... ...+..+.+++.+|.++...|++ ++|+.+|++++++.+ ....+++.+|.+|...|+
T Consensus 80 ~~~~~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~- 152 (474)
T 4abn_A 80 VQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP------ELVEAWNQLGEVYWKKGD- 152 (474)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC-
T ss_pred HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcCC-
Confidence 334444444444322 33566789999999999999999 999999999999876 456799999999999999
Q ss_pred cccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHH
Q psy10738 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL---------GNFKQAIYYHQERL 227 (609)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~---------g~~~~A~~~~~~al 227 (609)
+++|+.+|++++++. +. ..++.++|.++... |++++|+.+|++++
T Consensus 153 -------------------~~~A~~~~~~al~~~------p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al 206 (474)
T 4abn_A 153 -------------------VTSAHTCFSGALTHC------KN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAV 206 (474)
T ss_dssp -------------------HHHHHHHHHHHHTTC------CC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred -------------------HHHHHHHHHHHHhhC------CC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHH
Confidence 999999999999873 22 47999999999999 99999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHh--------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFL--------GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
++.+... .++.++|.+|... |++++|+.+|++++.+.+.. .....+++.+|.+|...|++++|
T Consensus 207 ~~~p~~~------~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~---~~~~~~~~~lg~~~~~~g~~~~A 277 (474)
T 4abn_A 207 QMDVLDG------RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA---SSNPDLHLNRATLHKYEESYGEA 277 (474)
T ss_dssp HHCTTCH------HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG---GGCHHHHHHHHHHHHHTTCHHHH
T ss_pred HhCCCCH------HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc---ccCHHHHHHHHHHHHHcCCHHHH
Confidence 9866543 3899999999999 99999999999999986610 12378999999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATK 345 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~ 345 (609)
+.+|++++.+.+.. ..++..++.++..+|++++|+..+.+
T Consensus 278 ~~~~~~al~l~p~~------~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 278 LEGFSQAAALDPAW------PEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHCTTC------HHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999886653 45889999999999999999886544
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.9e-16 Score=140.28 Aligned_cols=161 Identities=71% Similarity=1.111 Sum_probs=151.9
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 194 NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
+++...+.++..+|.++...|++++|+.++++++.+.+..++....+.++.++|.++...|++++|+.++++++.+.+..
T Consensus 3 ~d~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 82 (164)
T 3ro3_A 3 GSRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQL 82 (164)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Confidence 56677888999999999999999999999999999999999988889999999999999999999999999999999998
Q ss_pred CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 274 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
++......++..+|.++...|++++|+.++++++.+.+..++......++..+|.++...|++++|..++++++++.++.
T Consensus 83 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 162 (164)
T 3ro3_A 83 KDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREV 162 (164)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTC
T ss_pred CCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHh
Confidence 88888899999999999999999999999999999999988888889999999999999999999999999999998766
Q ss_pred C
Q psy10738 354 G 354 (609)
Q Consensus 354 ~ 354 (609)
+
T Consensus 163 ~ 163 (164)
T 3ro3_A 163 G 163 (164)
T ss_dssp -
T ss_pred C
Confidence 5
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.75 E-value=2.1e-17 Score=162.37 Aligned_cols=233 Identities=14% Similarity=-0.035 Sum_probs=188.9
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 68 NAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147 (609)
Q Consensus 68 ~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg 147 (609)
..+...|++++|+..++++++.. ..+.+..+.++..+|.++...|++++|+.+|++++.+.+ ....++..+|
T Consensus 13 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~la 84 (275)
T 1xnf_A 13 VPLQPTLQQEVILARMEQILASR--ALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLG 84 (275)
T ss_dssp CCCCCCHHHHHHHHHHHHHHTSS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHH
T ss_pred eccCccchHHHHHHHHHHHHhcc--cccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCC------CcHHHHHHHH
Confidence 33445688999999999998762 133567899999999999999999999999999999855 3466899999
Q ss_pred HHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 148 NVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 148 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
.+|...|+ +++|+.++++++.+. +....++.++|.+|...|++++|+.++++++
T Consensus 85 ~~~~~~~~--------------------~~~A~~~~~~al~~~------~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 138 (275)
T 1xnf_A 85 IYLTQAGN--------------------FDAAYEAFDSVLELD------PTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 138 (275)
T ss_dssp HHHHHTTC--------------------HHHHHHHHHHHHHHC------TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHccC--------------------HHHHHHHHHHHHhcC------ccccHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 99999999 999999999999873 3335789999999999999999999999999
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
.+.+.... ....++ ++...|++++|+.++.+++...+.. ...+.++.++...+++++|+..+.+++
T Consensus 139 ~~~~~~~~------~~~~~~-~~~~~~~~~~A~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~a~~~~~~~~ 204 (275)
T 1xnf_A 139 QDDPNDPF------RSLWLY-LAEQKLDEKQAKEVLKQHFEKSDKE-------QWGWNIVEFYLGNISEQTLMERLKADA 204 (275)
T ss_dssp HHCTTCHH------HHHHHH-HHHHHHCHHHHHHHHHHHHHHSCCC-------STHHHHHHHHTTSSCHHHHHHHHHHHC
T ss_pred HhCCCChH------HHHHHH-HHHHhcCHHHHHHHHHHHHhcCCcc-------hHHHHHHHHHHHhcCHHHHHHHHHHHh
Confidence 87554321 222223 4467799999999999988765432 122457778888999999999999998
Q ss_pred HHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
...+.. ......++..+|.+|...|++++|+.++++++.+.
T Consensus 205 ~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 205 TDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp CSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cccccc--cccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 776552 22336789999999999999999999999999864
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=6.9e-18 Score=187.81 Aligned_cols=175 Identities=25% Similarity=0.328 Sum_probs=158.8
Q ss_pred ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 95 DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 95 d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
..|..+.++.++|.+|..+|++++|+.+|++++++.+ ....+++++|.+|...|+
T Consensus 4 s~P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P------~~~~a~~nLg~~l~~~g~------------------- 58 (723)
T 4gyw_A 4 SCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFP------EFAAAHSNLASVLQQQGK------------------- 58 (723)
T ss_dssp --CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTC-------------------
T ss_pred CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC-------------------
Confidence 3577899999999999999999999999999999876 557799999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 175 CLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+++|+.+|++++++ .+....++.++|.++..+|++++|+++|++++++.+... .++.++|.+|..+|
T Consensus 59 -~~eA~~~~~~Al~l------~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~------~a~~~Lg~~~~~~g 125 (723)
T 4gyw_A 59 -LQEALMHYKEAIRI------SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA------DAHSNLASIHKDSG 125 (723)
T ss_dssp -HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTT
T ss_pred -HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcC
Confidence 99999999999998 455678999999999999999999999999999866543 38999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 255 EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 255 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
++++|+.+|++++++.+.. ..++.++|.++..+|++++|++.+++++++.++.
T Consensus 126 ~~~eAi~~~~~Al~l~P~~------~~a~~~L~~~l~~~g~~~~A~~~~~kal~l~~~~ 178 (723)
T 4gyw_A 126 NIPEAIASYRTALKLKPDF------PDAYCNLAHCLQIVCDWTDYDERMKKLVSIVADQ 178 (723)
T ss_dssp CHHHHHHHHHHHHHHCSCC------HHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCC------hHHHhhhhhHHHhcccHHHHHHHHHHHHHhChhH
Confidence 9999999999999987654 7789999999999999999999999999988764
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.75 E-value=1.6e-16 Score=150.69 Aligned_cols=204 Identities=20% Similarity=0.107 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....+
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~ 78 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNE----LAWLVRAEIYQYLKVNDKAQESFRQALSI------KPDSAEI 78 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccch----HHHHHHHHHHHHcCChHHHHHHHHHHHHh------CCCChHH
Confidence 3455679999999999999999999999999874 48899999999999999999999999998 5667789
Q ss_pred HHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 103 SGNLGNTLKVM-GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 103 ~~~lg~~~~~~-g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
+..+|.++... |++++|+.++++++. .+..+....++..+|.++...|+ +++|+.
T Consensus 79 ~~~l~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~ 134 (225)
T 2vq2_A 79 NNNYGWFLCGRLNRPAESMAYFDKALA----DPTYPTPYIANLNKGICSAKQGQ--------------------FGLAEA 134 (225)
T ss_dssp HHHHHHHHHTTTCCHHHHHHHHHHHHT----STTCSCHHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHc----CcCCcchHHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 99999999999 999999999999987 22333556789999999999999 999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR-EFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
++++++... +....++..+|.++...|++++|+.++++++...+ ... .++..++.++...|+++.|.
T Consensus 135 ~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~ 202 (225)
T 2vq2_A 135 YLKRSLAAQ------PQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQA------DDLLLGWKIAKALGNAQAAY 202 (225)
T ss_dssp HHHHHHHHS------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCH------HHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHhC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCH------HHHHHHHHHHHhcCcHHHHH
Confidence 999998873 33356889999999999999999999999998765 322 25677888999999999999
Q ss_pred HHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQD 272 (609)
Q Consensus 261 ~~~~~al~~~~~ 272 (609)
.+++.+....+.
T Consensus 203 ~~~~~~~~~~p~ 214 (225)
T 2vq2_A 203 EYEAQLQANFPY 214 (225)
T ss_dssp HHHHHHHHHCTT
T ss_pred HHHHHHHHhCCC
Confidence 999988776543
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=99.75 E-value=1.1e-16 Score=159.75 Aligned_cols=196 Identities=14% Similarity=0.118 Sum_probs=169.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.+...+..++..|++++|+.++++++.......+.......+..+|.++...|++++|+.++++++.+.....+....+.
T Consensus 77 ~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 3u3w_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHH
Confidence 44556788899999999999999998753222222222456667999999999999999999999997776677667788
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
++.++|.+|...|+ +++|+.+|+++++..+.. .+....+.++.++|.+|..+|+|++|+
T Consensus 157 ~~~~lg~~y~~~g~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~ 216 (293)
T 3u3w_A 157 IENAIANIYAENGY--------------------LKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESL 216 (293)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999 999999999999999888 677888889999999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQDLGDRA 277 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~ 277 (609)
.++++++++.+..++....+.++.++|.+|..+| .+++|+.+|++|+.++...++..
T Consensus 217 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~~~~~~~~ 274 (293)
T 3u3w_A 217 YQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHA 274 (293)
T ss_dssp HHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCTG
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHH
Confidence 9999999999998887788889999999999999 47999999999999999887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.6e-16 Score=137.57 Aligned_cols=162 Identities=37% Similarity=0.568 Sum_probs=151.5
Q ss_pred cCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 133 LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL 212 (609)
Q Consensus 133 ~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 212 (609)
.+++...+.++..+|.++...|+ +++|+.++++++.+.+..++....+.++.++|.++..
T Consensus 2 ~~d~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~ 61 (164)
T 3ro3_A 2 PGSRAAQGRAFGNLGNTHYLLGN--------------------FRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIF 61 (164)
T ss_dssp --CHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 35666788999999999999999 9999999999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
.|++++|+.++++++.+.+..++......++.++|.++...|++++|+.++++++.+.+..++......++..+|.++..
T Consensus 62 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~ 141 (164)
T 3ro3_A 62 LGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTA 141 (164)
T ss_dssp TTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHH
Confidence 99999999999999999999999888899999999999999999999999999999999988888889999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHhc
Q psy10738 293 LRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 293 ~g~~~~A~~~~~~al~~~~~~~ 314 (609)
.|++++|+.++++++.+.++.+
T Consensus 142 ~g~~~~A~~~~~~a~~~~~~~~ 163 (164)
T 3ro3_A 142 LGNHDQAMHFAEKHLEISREVG 163 (164)
T ss_dssp HTCHHHHHHHHHHHHHHHTTC-
T ss_pred ccCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999999877643
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.5e-17 Score=160.38 Aligned_cols=230 Identities=8% Similarity=-0.060 Sum_probs=182.1
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...+..+...|++++|+..++.. .+ + ...++..++..+...|++++|++.+++.+.. +..|....+++.
T Consensus 38 ~~l~r~yi~~g~~~~al~~~~~~---~~--~--~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~----~~~P~~~~~~~~ 106 (291)
T 3mkr_A 38 VFLYRAYLAQRKYGVVLDEIKPS---SA--P--ELQAVRMFAEYLASHSRRDAIVAELDREMSR----SVDVTNTTFLLM 106 (291)
T ss_dssp HHHHHHHHHTTCHHHHHHHSCTT---SC--H--HHHHHHHHHHHHHCSTTHHHHHHHHHHHHHS----CCCCSCHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHhccc---CC--h--hHHHHHHHHHHHcCCCcHHHHHHHHHHHHhc----ccCCCCHHHHHH
Confidence 44588999999999999877552 22 2 2457888999999999999999999988753 113556788999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.++...|++++|+.++++ + ....++..+|.+|...|+ +++|+..+++
T Consensus 107 la~~~~~~g~~~~Al~~l~~--------~---~~~~~~~~l~~~~~~~g~--------------------~~~A~~~l~~ 155 (291)
T 3mkr_A 107 AASIYFYDQNPDAALRTLHQ--------G---DSLECMAMTVQILLKLDR--------------------LDLARKELKK 155 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHTT--------C---CSHHHHHHHHHHHHHTTC--------------------HHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHhC--------C---CCHHHHHHHHHHHHHCCC--------------------HHHHHHHHHH
Confidence 99999999999999999987 1 345688999999999999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKR 265 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 265 (609)
++... .+.. .......+..++...|++++|+.+|+++++..+.. ..+++++|.++...|++++|+.+|++
T Consensus 156 ~~~~~---p~~~-~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~eA~~~l~~ 225 (291)
T 3mkr_A 156 MQDQD---EDAT-LTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPT------LLLLNGQAACHMAQGRWEAAEGVLQE 225 (291)
T ss_dssp HHHHC---TTCH-HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCC------HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhhC---cCcH-HHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 98873 1111 11111111223334589999999999999874432 34899999999999999999999999
Q ss_pred HHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH-HHHHHHHHHHHHHHh
Q psy10738 266 TLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT-AIDYHLRHLIIAQQL 313 (609)
Q Consensus 266 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~-A~~~~~~al~~~~~~ 313 (609)
++...+.. +.++.++|.++...|++++ +..++++++++.+..
T Consensus 226 al~~~p~~------~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~ 268 (291)
T 3mkr_A 226 ALDKDSGH------PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSH 268 (291)
T ss_dssp HHHHCTTC------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTC
T ss_pred HHHhCCCC------HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCC
Confidence 99987754 7789999999999999976 578999999887654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.73 E-value=7.2e-17 Score=171.42 Aligned_cols=294 Identities=15% Similarity=0.116 Sum_probs=188.9
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH----------HHHHHhcCCh---HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE----------GERLCKAGDC---RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~----------g~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~ 71 (609)
.+|..+.+.|++++|..++..+.. |.++...|++ ++|+.+|+++++. + +.+++.+|.++.
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~----~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---S----PRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCCTGGGTCC-----------------------------------CHHHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---C----HHHHHHHHHHHH
Confidence 356666666666666666655443 6666666666 6777777776654 1 225566666555
Q ss_pred HhC-----CHHHHHHHHHHHHHHHH------------HcC---------------ChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 72 YLG-----DYQKAMQYHKQDLTLAR------------NME---------------DKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 72 ~~g-----~~~~A~~~~~~al~~~~------------~~~---------------d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
..+ ++++|+.+|+++++.-. ..+ .......+++.+|.+|...+.++++
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~ 160 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH 160 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence 444 56667766666654200 000 0112244566677777777766555
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc---cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g---~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 196 (609)
............. ++ ..+++++|.+|...| + +++|+.+|+++.+. .
T Consensus 161 ~~~a~~~~~~a~~-~~----~~a~~~Lg~~~~~~g~~~~--------------------~~~A~~~~~~aa~~------g 209 (452)
T 3e4b_A 161 LDDVERICKAALN-TT----DICYVELATVYQKKQQPEQ--------------------QAELLKQMEAGVSR------G 209 (452)
T ss_dssp HHHHHHHHHHHTT-TC----TTHHHHHHHHHHHTTCHHH--------------------HHHHHHHHHHHHHT------T
T ss_pred HHHHHHHHHHHHc-CC----HHHHHHHHHHHHHcCCccc--------------------HHHHHHHHHHHHHC------C
Confidence 5554333332221 12 228899999999988 6 99999999998875 2
Q ss_pred HHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH-H--HHhCCHHHHHHHHHHHHHH
Q psy10738 197 AAQGRACGNLGNTYYLL----GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS-H--IFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~~al~~ 269 (609)
+..+..++++|.+|... +++++|+.+|+++. +.... +++++|.+ + ...+++++|+.+|+++.+.
T Consensus 210 ~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~------a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~ 280 (452)
T 3e4b_A 210 TVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA------SWVSLAQLLYDFPELGDVEQMMKYLDNGRAA 280 (452)
T ss_dssp CSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH------HHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH------HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC
Confidence 33345668999999765 79999999999987 33333 88999998 4 4689999999999998753
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhC-----CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH----cCChHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLR-----DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA----RGNHEKAL 340 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~ 340 (609)
+ ...++++||.+|. .| ++++|+.+|+++. +. ...++++||.+|.. ..++++|+
T Consensus 281 ----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---~g------~~~A~~~Lg~~y~~G~g~~~d~~~A~ 342 (452)
T 3e4b_A 281 ----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---GR------EVAADYYLGQIYRRGYLGKVYPQKAL 342 (452)
T ss_dssp ----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---TT------CHHHHHHHHHHHHTTTTSSCCHHHHH
T ss_pred ----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---CC------CHHHHHHHHHHHHCCCCCCcCHHHHH
Confidence 2 2678999999998 66 9999999999988 22 35689999999887 44999999
Q ss_pred HHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 341 YFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 341 ~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
.+|+++.+ .+...+..+|+.+|.
T Consensus 343 ~~~~~Aa~--------~g~~~A~~~Lg~~y~ 365 (452)
T 3e4b_A 343 DHLLTAAR--------NGQNSADFAIAQLFS 365 (452)
T ss_dssp HHHHHHHT--------TTCTTHHHHHHHHHH
T ss_pred HHHHHHHh--------hChHHHHHHHHHHHH
Confidence 99999976 234578889999886
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.72 E-value=8e-16 Score=162.03 Aligned_cols=241 Identities=12% Similarity=0.082 Sum_probs=210.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-----------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-----------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-----------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~ 171 (609)
....|..+...|+|++|++.|.++++..+...+. .....++.++|.+|...|+
T Consensus 7 ~l~~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~---------------- 70 (434)
T 4b4t_Q 7 KLEEARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGA---------------- 70 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTC----------------
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC----------------
Confidence 4455677778888888888888888766544332 2345678999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 251 (609)
+++|++++.+++.+....++......+...+|.++...|++++|+.++++++.+....++....+.++.++|.+|.
T Consensus 71 ----~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~ 146 (434)
T 4b4t_Q 71 ----KDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHY 146 (434)
T ss_dssp ----HHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHH
Confidence 9999999999999998887777777888999999999999999999999999999998887777889999999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcch-hhHHHHHHHHHHHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDR-VGEGRACWSLGNAH 330 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~La~~~ 330 (609)
..|+|++|..++++++.......+......++..+|.+|...|++++|..++++++.+.....++ ...+..+..+|.++
T Consensus 147 ~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~ 226 (434)
T 4b4t_Q 147 QKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILH 226 (434)
T ss_dssp HHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHT
T ss_pred HccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHH
Confidence 99999999999999999998888888889999999999999999999999999999999887664 45678889999999
Q ss_pred HHcCChHHHHHHHHHHHHHHHHcCCCchHHHHH
Q psy10738 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQ 363 (609)
Q Consensus 331 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~ 363 (609)
...|++++|..+|.++++.....+.......+.
T Consensus 227 ~~~~~y~~A~~~~~~a~~~~~~~~~~~~~~~~~ 259 (434)
T 4b4t_Q 227 CEDKDYKTAFSYFFESFESYHNLTTHNSYEKAC 259 (434)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHTTTSSCHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHhhhhhhhhhHHHHH
Confidence 999999999999999999999888766554443
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.6e-16 Score=152.00 Aligned_cols=204 Identities=12% Similarity=0.130 Sum_probs=163.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCC-cchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGT-DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
..+...|..++..|++++|+..|+++++..| .+. .+++.+|.++...|++++|+.++++++.. .+....
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~ 77 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDS----VTAYNCGVCADNIKKYKEAADYFDIAIKK------NYNLAN 77 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------TCSHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCc----HHHHHHHHHHHHhhcHHHHHHHHHHHHHh------CcchHH
Confidence 4566789999999999999999999999998 664 37778999999999999999999999988 777899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND-KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d-~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
++..+|.+|..+|++++|+.++++++.+.+.... ....+.++..+|.++...|+ +++|+
T Consensus 78 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~--------------------~~~A~ 137 (228)
T 4i17_A 78 AYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGN--------------------IEKAE 137 (228)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTC--------------------HHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhcc--------------------HHHHH
Confidence 9999999999999999999999999998763221 12345789999999999999 99999
Q ss_pred HHHHHHHHHHHHhCChHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 181 KYYEQNLALMKEINDTAA--QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~--~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
.+|++++++ .+. ...++.++|.+|...|+. .++++..+... . .....+......+.+++
T Consensus 138 ~~~~~al~~------~p~~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~--~------~~~~~~~~~~~~~~~~~ 198 (228)
T 4i17_A 138 ENYKHATDV------TSKKWKTDALYSLGVLFYNNGAD-----VLRKATPLASS--N------KEKYASEKAKADAAFKK 198 (228)
T ss_dssp HHHHHHTTS------SCHHHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTT--C------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhc------CCCcccHHHHHHHHHHHHHHHHH-----HHHHHHhcccC--C------HHHHHHHHHHHHHHHHH
Confidence 999999987 455 678999999999876643 33333332211 1 11123344555677899
Q ss_pred HHHHHHHHHHHHHHcCC
Q psy10738 259 ASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 259 A~~~~~~al~~~~~~~~ 275 (609)
|+.++++++++.+...+
T Consensus 199 A~~~~~~a~~l~p~~~~ 215 (228)
T 4i17_A 199 AVDYLGEAVTLSPNRTE 215 (228)
T ss_dssp HHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHhhcCCCCHH
Confidence 99999999998876544
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.6e-16 Score=150.60 Aligned_cols=215 Identities=14% Similarity=0.076 Sum_probs=167.0
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChh-hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKL-GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
..++.+|.+++..|++++|+.+|++++.+ .+ ....+++++|.++...|++++|+.++++++.+.+ ..
T Consensus 8 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~~ 75 (228)
T 4i17_A 8 NQLKNEGNDALNAKNYAVAFEKYSEYLKL------TNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNY------NL 75 (228)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC------SH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhc------cCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCc------ch
Confidence 58899999999999999999999999998 43 4557888899999999999999999999998765 56
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
..++..+|.+|...|+ +++|+.++++++++.+.... ....+.++.++|.++...|++++
T Consensus 76 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 135 (228)
T 4i17_A 76 ANAYIGKSAAYRDMKN--------------------NQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEK 135 (228)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHccc--------------------HHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHH
Confidence 7899999999999999 99999999999987432210 12235789999999999999999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 298 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 298 (609)
|+.+|++++++.+. .....++.++|.+|...|+. .++++..+.... .....+......+.+++
T Consensus 136 A~~~~~~al~~~p~----~~~~~~~~~l~~~~~~~~~~-----~~~~a~~~~~~~--------~~~~~~~~~~~~~~~~~ 198 (228)
T 4i17_A 136 AEENYKHATDVTSK----KWKTDALYSLGVLFYNNGAD-----VLRKATPLASSN--------KEKYASEKAKADAAFKK 198 (228)
T ss_dssp HHHHHHHHTTSSCH----HHHHHHHHHHHHHHHHHHHH-----HHHHHGGGTTTC--------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCC----cccHHHHHHHHHHHHHHHHH-----HHHHHHhcccCC--------HHHHHHHHHHHHHHHHH
Confidence 99999999987443 01245899999999876643 333333332111 11123344556778999
Q ss_pred HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q psy10738 299 AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH 330 (609)
Q Consensus 299 A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~ 330 (609)
|+.++++++++.++... +...++.+.
T Consensus 199 A~~~~~~a~~l~p~~~~------~~~~l~~i~ 224 (228)
T 4i17_A 199 AVDYLGEAVTLSPNRTE------IKQMQDQVK 224 (228)
T ss_dssp HHHHHHHHHHHCTTCHH------HHHHHHHHH
T ss_pred HHHHHHHHhhcCCCCHH------HHHHHHHHH
Confidence 99999999999988855 444455443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.4e-16 Score=169.18 Aligned_cols=274 Identities=14% Similarity=0.074 Sum_probs=178.3
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY---QKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
.|..++..|++++|+.+|+++.+.+. +. +++.+|.+|...|++ ++|+.+|+++++. .+.+++
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~--~~----A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------~~~A~~ 73 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY--SE----AQVGLADIQVGTRDPAQIKQAEATYRAAADT---------SPRAQA 73 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC--CT----GGGTCC-------------------------------------CHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC--HH----HHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------CHHHHH
Confidence 48889999999999999999988753 22 678899999999988 9999999999854 456789
Q ss_pred HHHHHHHHcC-----CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh----
Q psy10738 105 NLGNTLKVMG-----KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC---- 175 (609)
Q Consensus 105 ~lg~~~~~~g-----~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~---- 175 (609)
++|.++...| ++++|+.+|+++++. ++ ..++++||.+|...+..... .+....
T Consensus 74 ~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~----g~----~~A~~~Lg~~y~~~~~~~~~----------~~a~~~~~~a 135 (452)
T 3e4b_A 74 RLGRLLAAKPGATEAEHHEAESLLKKAFAN----GE----GNTLIPLAMLYLQYPHSFPN----------VNAQQQISQW 135 (452)
T ss_dssp HHHHHHHTC--CCHHHHHHHHHHHHHHHHT----TC----SSCHHHHHHHHHHCGGGCTT----------CCHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcCHHHHHHHHHHHHHC----CC----HHHHHHHHHHHHhCCCCCCC----------HHHHHHHHHH
Confidence 9999777766 889999999999872 11 22666667666665541100 000000
Q ss_pred ---------------------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHH
Q psy10738 176 ---------------------LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---NFKQAIYYHQERLKIAR 231 (609)
Q Consensus 176 ---------------------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~ 231 (609)
++++............ .++ ..+++++|.+|...| ++++|+.+|+++.+..+
T Consensus 136 ~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~-~~~----~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~ 210 (452)
T 3e4b_A 136 QAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKAAL-NTT----DICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT 210 (452)
T ss_dssp HHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHT-TTC----TTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC
T ss_pred HHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHH-cCC----HHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC
Confidence 1111111111111110 112 128899999999999 99999999999876432
Q ss_pred HhCChHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-H--HHhCCHHHHHHHHH
Q psy10738 232 EFGDKAAERRANSNLGNSHIFL----GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNT-Y--TLLRDYPTAIDYHL 304 (609)
Q Consensus 232 ~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~-~--~~~g~~~~A~~~~~ 304 (609)
. .+..++++|.+|... +++++|+.+|+++. +. .+.+++.+|.+ + ...+++++|+.+|+
T Consensus 211 ~------~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g------~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~ 275 (452)
T 3e4b_A 211 V------TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PG------YPASWVSLAQLLYDFPELGDVEQMMKYLD 275 (452)
T ss_dssp S------CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GG------STHHHHHHHHHHHHSGGGCCHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CC------CHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 1 122558899999765 79999999999987 32 26788999998 4 57899999999999
Q ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHcC-----ChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHH
Q psy10738 305 RHLIIAQQLMDRVGEGRACWSLGNAHAARG-----NHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKA 372 (609)
Q Consensus 305 ~al~~~~~~~~~~~~~~~~~~La~~~~~~g-----~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~ 372 (609)
++.+. + ...+++.||.+|. .| ++++|+.+|+++. .+...+..+||.+|..
T Consensus 276 ~Aa~~----g----~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa---------~g~~~A~~~Lg~~y~~ 330 (452)
T 3e4b_A 276 NGRAA----D----QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV---------GREVAADYYLGQIYRR 330 (452)
T ss_dssp HHHHT----T----CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT---------TTCHHHHHHHHHHHHT
T ss_pred HHHHC----C----CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh---------CCCHHHHHHHHHHHHC
Confidence 98743 2 4568999999998 66 9999999999987 2456899999988876
|
| >4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-17 Score=89.56 Aligned_cols=24 Identities=54% Similarity=1.158 Sum_probs=20.7
Q ss_pred CchHHHHHHHhhhcchhhhcccCC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHLP 559 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~~ 559 (609)
||+||+||+||||||+|||||++|
T Consensus 1 dd~ff~ml~kcq~srlddqrcapp 24 (26)
T 4g5s_E 1 DEDFFDILVKCQGSRLDDQRCAPP 24 (26)
T ss_dssp --CHHHHHHHHSCCCCSSSCBCCC
T ss_pred ChhHHHHHHHhcccccccccCCCC
Confidence 689999999999999999999988
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.66 E-value=3.2e-15 Score=146.25 Aligned_cols=209 Identities=13% Similarity=0.099 Sum_probs=168.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...++..|..++..|+|++|+..|+++++..|.++. ...+++.+|.+|+..|++++|+..|++++...+. .+....
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~---~~~~~~ 90 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW-AADAQFYLARAYYQNKEYLLAASEYERFIQIYQI---DPRVPQ 90 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc-hHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCC---CchhHH
Confidence 346677899999999999999999999999997743 3568999999999999999999999999988332 345678
Q ss_pred HHHHHHHHHHH--------cCCHHHHHHHHHHHHHHHHHcCCcHH-----------HHHHHHHHHHHHHHcccccccCCC
Q psy10738 102 SSGNLGNTLKV--------MGKYDEAMVCCKRHLEISRQLNDKLS-----------EGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 102 a~~~lg~~~~~--------~g~~~~A~~~~~~al~l~~~~~d~~~-----------~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
+++.+|.++.. .|++++|+..|++++...+....... ....++.+|.+|...|+
T Consensus 91 a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~------- 163 (261)
T 3qky_A 91 AEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERREL------- 163 (261)
T ss_dssp HHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-------
T ss_pred HHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccC-------
Confidence 99999999999 99999999999999998764432211 11223899999999999
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHH
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL----------GNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~ 232 (609)
+++|+..|+++++..+ +.+....++..+|.+|..+ |++++|+.+|+++++..+.
T Consensus 164 -------------~~~A~~~~~~~l~~~p---~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~ 227 (261)
T 3qky_A 164 -------------YEAAAVTYEAVFDAYP---DTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPD 227 (261)
T ss_dssp -------------HHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTT
T ss_pred -------------HHHHHHHHHHHHHHCC---CCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCC
Confidence 9999999999988643 2333567899999999977 9999999999999987654
Q ss_pred hCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 233 FGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
. .....+...++.++...++++.+.
T Consensus 228 ~---~~~~~a~~~l~~~~~~~~~~~~~~ 252 (261)
T 3qky_A 228 S---PLLRTAEELYTRARQRLTELEGDA 252 (261)
T ss_dssp C---THHHHHHHHHHHHHHHHHHHHTCT
T ss_pred C---hHHHHHHHHHHHHHHHHHHhhhhh
Confidence 3 334446777788877777765543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.65 E-value=1.3e-15 Score=153.02 Aligned_cols=225 Identities=9% Similarity=0.005 Sum_probs=171.5
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-------hCCH-------HHHHHHHHHHHH-HHHHcCChhhHHHHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY-------LGDY-------QKAMQYHKQDLT-LARNMEDKLGEAKSS 103 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-~~~~~~d~~~~~~a~ 103 (609)
++|+..|++++...|.++. +|+.+|..+.. .|++ ++|+..|++++. + .+....+|
T Consensus 33 ~~a~~~~~~al~~~p~~~~----~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~------~p~~~~~~ 102 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLY 102 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTT------TTTCHHHH
T ss_pred HHHHHHHHHHHHHcCCCHH----HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHh------CcccHHHH
Confidence 7899999999999998855 78888888764 4775 889999999988 6 56677889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH-HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG-RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~-~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
..+|.++...|++++|...|++++++.+. .. .++.++|.++...|+ +++|+..
T Consensus 103 ~~~~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~~~~~~~~~~~~--------------------~~~A~~~ 156 (308)
T 2ond_A 103 FAYADYEESRMKYEKVHSIYNRLLAIEDI------DPTLVYIQYMKFARRAEG--------------------IKSGRMI 156 (308)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSSSS------CTHHHHHHHHHHHHHHHC--------------------HHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHhcccc------CccHHHHHHHHHHHHhcC--------------------HHHHHHH
Confidence 99999999999999999999999886431 12 278888999999998 9999999
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 183 YEQNLALMKEINDTAAQGRACGNLGNTYYL-LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 183 ~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
|+++++..+ ....++...+.+... .|++++|+.+|+++++..+... .++..+|.++...|++++|+.
T Consensus 157 ~~~a~~~~p------~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~~~~~~~~g~~~~A~~ 224 (308)
T 2ond_A 157 FKKAREDAR------TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP------EYVLAYIDYLSHLNEDNNTRV 224 (308)
T ss_dssp HHHHHTSTT------CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHTTCCHHHHHH
T ss_pred HHHHHhcCC------CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHCCCHHHHHH
Confidence 999887532 123344444444333 6889999999999888766432 377888888888899999999
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 262 HYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 262 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
+|++++.... -++.....++..++..+...|++++|...+.++++..++.
T Consensus 225 ~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 225 LFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 8888887410 0111124567777888888888888888888888877653
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.65 E-value=2.6e-15 Score=146.90 Aligned_cols=208 Identities=15% Similarity=0.080 Sum_probs=158.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..++.+|..++..|++++|+..|++++... .+.+....+++.+|.+|...|++++|+..|++++.+.+.. ...
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~---p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~ 88 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYG---RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQID---PRV 88 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC---SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC---CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCC---chh
Confidence 4588999999999999999999999998862 2233348899999999999999999999999999986633 345
Q ss_pred HHHHHHHHHHHHH--------cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH-----------HH
Q psy10738 140 GRALYNLGNVYHA--------KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA-----------QG 200 (609)
Q Consensus 140 ~~~~~~lg~~~~~--------~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~ 200 (609)
..+++.+|.++.. .|+ +++|+..|++++...+....... ..
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~ 148 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTD--------------------TRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLA 148 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHH--------------------HHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchh--------------------HHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHH
Confidence 6789999999999 898 99999999999987543322110 11
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL----------GEYQAASEHYKRTLVLA 270 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----------g~~~~A~~~~~~al~~~ 270 (609)
..+..+|.+|...|++++|+.+|+++++..+... ....+++.+|.+|..+ |++++|+.+|++++...
T Consensus 149 ~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~---~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~ 225 (261)
T 3qky_A 149 RKQYEAARLYERRELYEAAAVTYEAVFDAYPDTP---WADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF 225 (261)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST---THHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCc---hHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC
Confidence 2237888888888888888888888887655432 2334778888888866 78888888888887766
Q ss_pred HHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 271 QDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 271 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
+.. .....+...++.++...++++++
T Consensus 226 p~~---~~~~~a~~~l~~~~~~~~~~~~~ 251 (261)
T 3qky_A 226 PDS---PLLRTAEELYTRARQRLTELEGD 251 (261)
T ss_dssp TTC---THHHHHHHHHHHHHHHHHHHHTC
T ss_pred CCC---hHHHHHHHHHHHHHHHHHHhhhh
Confidence 532 33455666677777666666544
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.64 E-value=2.6e-15 Score=141.71 Aligned_cols=168 Identities=17% Similarity=0.135 Sum_probs=126.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHH----------------HHHHHHHhCCHHHHHHHHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQ----------------LGNAYFYLGDYQKAMQYHKQD 86 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~----------------lg~~~~~~g~~~~A~~~~~~a 86 (609)
-.++.+|..++..|++++|+..|+++++.+|+++. +++. +|.+|...|++++|+.+|+++
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 80 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKEL 80 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 35667899999999999999999999999998754 5666 888888888888888888888
Q ss_pred HHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCC
Q psy10738 87 LTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPG 166 (609)
Q Consensus 87 l~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~ 166 (609)
+++ .|....++..+|.++...|++++|+.+|++++++.+ ....+++++|.+|+..|+.
T Consensus 81 l~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P------~~~~a~~~lg~~~~~~~~~---------- 138 (208)
T 3urz_A 81 LQK------APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEA------DNLAANIFLGNYYYLTAEQ---------- 138 (208)
T ss_dssp HHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHHHH----------
T ss_pred HHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHHhHH----------
Confidence 887 677778888888888888888888888888888766 4456788888888776650
Q ss_pred CCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 167 EYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 167 ~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
....+...+.+++. +.....+++++|.++...|++++|+.+|++++++.+
T Consensus 139 --------~~~~~~~~~~~~~~-------~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 139 --------EKKKLETDYKKLSS-------PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp --------HHHHHHHHHC---C-------CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred --------HHHHHHHHHHHHhC-------CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 03444555544432 222234566778888888888888888888877654
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.63 E-value=4e-15 Score=136.11 Aligned_cols=172 Identities=18% Similarity=0.133 Sum_probs=141.0
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
....++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~------ 73 (186)
T 3as5_A 6 IRQVYYRDKGISHAKAGRYSQAVMLLEQVYDA------DAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAP------ 73 (186)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHTTTCCT------TSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------
T ss_pred hhhHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC------
Confidence 34667888999999999999999999888776 455678888999999999999999999999888754
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
....++..+|.++...|+ +++|+.++++++... +....++..+|.++...|+++
T Consensus 74 ~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~~a~~~~~~~~~~ 127 (186)
T 3as5_A 74 DNVKVATVLGLTYVQVQK--------------------YDLAVPLLIKVAEAN------PINFNVRFRLGVALDNLGRFD 127 (186)
T ss_dssp TCHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHTTCHH
T ss_pred CCHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHhcC------cHhHHHHHHHHHHHHHcCcHH
Confidence 345678889999999999 999999999888762 233567888999999999999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 273 (609)
+|+.++++++...+.. ..++..+|.++...|++++|+.++++++.+.+..
T Consensus 128 ~A~~~~~~~~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 128 EAIDSFKIALGLRPNE------GKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHhcCccc------hHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9999999988775432 2478889999999999999999999988877643
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.62 E-value=1.8e-14 Score=131.76 Aligned_cols=168 Identities=20% Similarity=0.256 Sum_probs=149.6
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|++++|+..|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 10 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 79 (186)
T 3as5_A 10 YYRDKGISHAKAGRYSQAVMLLEQVYDADAFDV----DVALHLGIAYVKTGAVDRGTELLERSLAD------APDNVKVA 79 (186)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCccCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHH
Confidence 445679999999999999999999999988774 48899999999999999999999999988 56678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...|++++|+.++++++...+ ....++..+|.++...|+ +++|+.++
T Consensus 80 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~~a~~~~~~~~--------------------~~~A~~~~ 133 (186)
T 3as5_A 80 TVLGLTYVQVQKYDLAVPLLIKVAEANP------INFNVRFRLGVALDNLGR--------------------FDEAIDSF 133 (186)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHhcCc------HhHHHHHHHHHHHHHcCc--------------------HHHHHHHH
Confidence 9999999999999999999999998755 345688999999999999 99999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
++++... +....++..+|.++...|++++|+.++++++.+.+..
T Consensus 134 ~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~ 177 (186)
T 3as5_A 134 KIALGLR------PNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGA 177 (186)
T ss_dssp HHHHHHC------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC
T ss_pred HHHHhcC------ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 9998873 2335788999999999999999999999999987654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-14 Score=145.31 Aligned_cols=225 Identities=11% Similarity=0.033 Sum_probs=183.4
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHH-HHHHcCCcHHHHH
Q psy10738 77 QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-------MGKY-------DEAMVCCKRHLE-ISRQLNDKLSEGR 141 (609)
Q Consensus 77 ~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-------~g~~-------~~A~~~~~~al~-l~~~~~d~~~~~~ 141 (609)
++|+..|++++.. .+..+.+|+.+|..+.. .|++ ++|+..|++++. +.+ ....
T Consensus 33 ~~a~~~~~~al~~------~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p------~~~~ 100 (308)
T 2ond_A 33 KRVMFAYEQCLLV------LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLK------KNML 100 (308)
T ss_dssp HHHHHHHHHHHHH------HTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTT------TCHH
T ss_pred HHHHHHHHHHHHH------cCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCc------ccHH
Confidence 7899999999998 78889999999998874 5885 899999999998 554 4456
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHH-HHHHHHHHHHHHcCCHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQG-RACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~-~~~~~lg~~~~~~g~~~~A~ 220 (609)
++..+|.++...|+ +++|...|++++++. +... .++.++|.++...|++++|+
T Consensus 101 ~~~~~~~~~~~~~~--------------------~~~A~~~~~~al~~~------p~~~~~~~~~~~~~~~~~~~~~~A~ 154 (308)
T 2ond_A 101 LYFAYADYEESRMK--------------------YEKVHSIYNRLLAIE------DIDPTLVYIQYMKFARRAEGIKSGR 154 (308)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHTSS------SSCTHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHHhcc------ccCccHHHHHHHHHHHHhcCHHHHH
Confidence 89999999999999 999999999999852 2222 28899999999999999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIF-LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
..|+++++..+.. ..++...+.+... .|++++|+..|+++++..+.. ..++..+|.++...|++++|
T Consensus 155 ~~~~~a~~~~p~~------~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~~~~~~~~~g~~~~A 222 (308)
T 2ond_A 155 MIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLNEDNNT 222 (308)
T ss_dssp HHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTCCHHHH
T ss_pred HHHHHHHhcCCCC------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHCCCHHHH
Confidence 9999999865432 1244444444333 799999999999999988753 67889999999999999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+..|++++.... -.+.....++..++.++...|++++|...++++++.....
T Consensus 223 ~~~~~~al~~~~--l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~~p~~ 274 (308)
T 2ond_A 223 RVLFERVLTSGS--LPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp HHHHHHHHHSSS--SCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHHhccC--CCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHcccc
Confidence 999999987410 0111235578888999999999999999999999987543
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.60 E-value=1.4e-13 Score=156.36 Aligned_cols=296 Identities=15% Similarity=0.101 Sum_probs=191.8
Q ss_pred hhhhHhhhcCCCcchhHHHHHHHH----HHHHH-hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 5 NISSSDSQSGGADGGNMCLELALE----GERLC-KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKA 79 (609)
Q Consensus 5 ~Lg~~~~~~g~~~~a~~~~~l~~~----g~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 79 (609)
.+|.++...|.+++|..+|+.+.. ...++ ..|++++|+++++++ +. ..+|+.+|.++...|++++|
T Consensus 1054 eIA~Iai~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aerv-----n~----p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1054 DIANIAISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERC-----NE----PAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred HHHHHHHhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhc-----CC----HHHHHHHHHHHHhCCCHHHH
Confidence 357788888888888877765432 12333 667777777777655 22 45899999999999999999
Q ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccccccc
Q psy10738 80 MQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGK 159 (609)
Q Consensus 80 ~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~ 159 (609)
+..|.++ .....+..+|.++...|+|++|+++|..+.+..+.. .+...+|.+|...++
T Consensus 1125 IdsYiKA-----------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-------~Idt~LafaYAKl~r---- 1182 (1630)
T 1xi4_A 1125 IDSYIKA-----------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES-------YVETELIFALAKTNR---- 1182 (1630)
T ss_pred HHHHHhc-----------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccc-------cccHHHHHHHHhhcC----
Confidence 9999775 335678889999999999999999999988765321 122237777777776
Q ss_pred CCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 160 VGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAE 239 (609)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 239 (609)
+++ ++.|.+ .+. ...+..+|..+...|+|++|+.+|.++
T Consensus 1183 ----------------lee-le~fI~----------~~n-~ad~~~iGd~le~eg~YeeA~~~Y~kA------------- 1221 (1630)
T 1xi4_A 1183 ----------------LAE-LEEFIN----------GPN-NAHIQQVGDRCYDEKMYDAAKLLYNNV------------- 1221 (1630)
T ss_pred ----------------HHH-HHHHHh----------CCC-HHHHHHHHHHHHhcCCHHHHHHHHHhh-------------
Confidence 653 333311 011 124456777777777777777777774
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH------------------cC-CcHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 240 RRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD------------------LG-DRAVEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 240 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~------------------~~-~~~~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
..|..+|.+|.++|++++|++.+++|.....- .+ .....+..+..++..|...|.|++|+
T Consensus 1222 -~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI 1300 (1630)
T 1xi4_A 1222 -SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI 1300 (1630)
T ss_pred -hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHH
Confidence 15666777777777777777777766432210 00 00001234456777788888888888
Q ss_pred HHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCC
Q psy10738 301 DYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR--GNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTN 378 (609)
Q Consensus 301 ~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~--g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~ 378 (609)
.+++.++.+.+. ....+..||.+|.+- ++..+++++|...+.+-+-+. .-.....+..+.-+|..-|++++
T Consensus 1301 ~LlE~aL~Lera------H~gmftELaiLyaKy~peklmEhlk~f~~rini~k~~r-~~e~~~lW~elv~LY~~~~e~dn 1373 (1630)
T 1xi4_A 1301 TMLEAALGLERA------HMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR-AAEQAHLWAELVFLYDKYEEYDN 1373 (1630)
T ss_pred HHHHHHhccChh------HhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccchHhH-HHHHHHHHHHHHHHHHhcccHHH
Confidence 888887766433 333555566666543 344455555554444321111 11456667788888888888777
Q ss_pred CC
Q psy10738 379 DL 380 (609)
Q Consensus 379 al 380 (609)
|+
T Consensus 1374 A~ 1375 (1630)
T 1xi4_A 1374 AI 1375 (1630)
T ss_pred HH
Confidence 65
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.60 E-value=1.6e-15 Score=169.33 Aligned_cols=192 Identities=15% Similarity=0.026 Sum_probs=161.5
Q ss_pred HhcCChHHHHHHHHHHH--------HhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 33 CKAGDCRAGVAFFQAAI--------QAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 33 ~~~g~~~~A~~~~~~al--------~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
...|++++|+..|++++ +.+|++.. +++.+|.++...|++++|+..++++++. .+....+++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~----~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~ 471 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVE----LPLMEVRALLDLGDVAKATRKLDDLAER------VGWRWRLVW 471 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH------HCCCHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchh----HHHHHHHHHHhcCCHHHHHHHHHHHhcc------CcchHHHHH
Confidence 78899999999999999 77787744 8899999999999999999999999998 777889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
++|.++...|++++|+..|++++++.+ ....+++++|.+|...|+ +++ +.+|+
T Consensus 472 ~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~~~~~lg~~~~~~g~--------------------~~~-~~~~~ 524 (681)
T 2pzi_A 472 YRAVAELLTGDYDSATKHFTEVLDTFP------GELAPKLALAATAELAGN--------------------TDE-HKFYQ 524 (681)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHST------TCSHHHHHHHHHHHHHTC--------------------CCT-TCHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHcCC--------------------hHH-HHHHH
Confidence 999999999999999999999999887 446788999999999999 889 99999
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH-HHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA-SEHY 263 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~ 263 (609)
+++++ .+....+++++|.++..+|++++|+.+|++++++.+... .++.++|.++...++.+++ ...+
T Consensus 525 ~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~a~~~~~~~~~~~~~~~~~~~~~~ 592 (681)
T 2pzi_A 525 TVWST------NDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFT------TARLTSAVTLLSGRSTSEVTEEQI 592 (681)
T ss_dssp HHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHH------HHHHHHHHHTC-------CCHHHH
T ss_pred HHHHh------CCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccH------HHHHHHHHHHHccCCCCCCCHHHH
Confidence 99987 455567999999999999999999999999988755433 3889999999887775555 6667
Q ss_pred HHHHHHHHHc
Q psy10738 264 KRTLVLAQDL 273 (609)
Q Consensus 264 ~~al~~~~~~ 273 (609)
.+++......
T Consensus 593 ~~A~~~l~~~ 602 (681)
T 2pzi_A 593 RDAARRVEAL 602 (681)
T ss_dssp HHHHHHHHTS
T ss_pred HHHHHHHhhC
Confidence 7777666554
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.59 E-value=6.9e-15 Score=164.17 Aligned_cols=198 Identities=13% Similarity=-0.036 Sum_probs=162.5
Q ss_pred HHhCCHHHHHHHHHHHHHHH--HHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLA--RNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~--~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
...|++++|+..+++++... ......+....++..+|.++...|++++|+..|++++++.+ ....+++++|.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~ 475 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVG------WRWRLVWYRAV 475 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC------CCHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCc------chHHHHHHHHH
Confidence 67899999999999998111 01112567788999999999999999999999999999877 45779999999
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
+|...|+ +++|+..|++++++ .+....++.++|.++..+|++++ +.+|+++++
T Consensus 476 ~~~~~g~--------------------~~~A~~~~~~al~l------~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~ 528 (681)
T 2pzi_A 476 AELLTGD--------------------YDSATKHFTEVLDT------FPGELAPKLALAATAELAGNTDE-HKFYQTVWS 528 (681)
T ss_dssp HHHHHTC--------------------HHHHHHHHHHHHHH------STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHH
T ss_pred HHHHcCC--------------------HHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHH
Confidence 9999999 99999999999998 44456789999999999999999 999999999
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH-HHHHHHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA-IDYHLRHL 307 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A-~~~~~~al 307 (609)
+.+.... +++++|.++..+|++++|+.+|++++++.+. ...+++++|.++...++.++| ...+.+|+
T Consensus 529 ~~P~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~------~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~ 596 (681)
T 2pzi_A 529 TNDGVIS------AAFGLARARSAEGDRVGAVRTLDEVPPTSRH------FTTARLTSAVTLLSGRSTSEVTEEQIRDAA 596 (681)
T ss_dssp HCTTCHH------HHHHHHHHHHHTTCHHHHHHHHHTSCTTSTT------HHHHHHHHHHHTC-------CCHHHHHHHH
T ss_pred hCCchHH------HHHHHHHHHHHcCCHHHHHHHHHhhcccCcc------cHHHHHHHHHHHHccCCCCCCCHHHHHHHH
Confidence 8665433 8999999999999999999999999987765 377899999999887776665 66777777
Q ss_pred HHHHHh
Q psy10738 308 IIAQQL 313 (609)
Q Consensus 308 ~~~~~~ 313 (609)
......
T Consensus 597 ~~l~~~ 602 (681)
T 2pzi_A 597 RRVEAL 602 (681)
T ss_dssp HHHHTS
T ss_pred HHHhhC
Confidence 766655
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.59 E-value=1.9e-14 Score=135.67 Aligned_cols=166 Identities=22% Similarity=0.232 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH----------------HHHHHHHcCCHHHHHHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN----------------LGNTLKVMGKYDEAMVCCK 124 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~----------------lg~~~~~~g~~~~A~~~~~ 124 (609)
..+...|..++..|++++|+.+|++++.. .|....+++. +|.+|...|++++|+.+|+
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 78 (208)
T 3urz_A 5 DEMLQKVSAAIEAGQNGQAVSYFRQTIAL------NIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK 78 (208)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 35677889999999999999999999988 6777777777 6666666666666666666
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204 (609)
Q Consensus 125 ~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 204 (609)
+++++.+ ....++.++|.+|...|+ +++|+.+|++++++ .+....++.
T Consensus 79 ~al~~~p------~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~------~P~~~~a~~ 126 (208)
T 3urz_A 79 ELLQKAP------NNVDCLEACAEMQVCRGQ--------------------EKDALRMYEKILQL------EADNLAANI 126 (208)
T ss_dssp HHHHHCT------TCHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc------CCCCHHHHH
Confidence 6666544 334556666666666666 66666666666655 333345566
Q ss_pred HHHHHHHHcCCH--HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 205 NLGNTYYLLGNF--KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 205 ~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
++|.+|+..|+. ..+...+.+++. ..+ ...+++++|.++...|++++|+.+|++++++.|
T Consensus 127 ~lg~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P 188 (208)
T 3urz_A 127 FLGNYYYLTAEQEKKKLETDYKKLSS-----PTK--MQYARYRDGLSKLFTTRYEKARNSLQKVILRFP 188 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHC---C-----CCH--HHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSC
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHhC-----CCc--hhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 666666554432 233333333321 111 112445556666666666666666666665544
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.55 E-value=8.4e-13 Score=150.05 Aligned_cols=236 Identities=14% Similarity=0.074 Sum_probs=177.8
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
|.++...|.|++|..+|+++- .. ...+...+...|++++|+++++++ ....+|+.+|.
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~------~~A~~VLie~i~nldrAiE~Aerv-----------n~p~vWsqLAK 1113 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VN------TSAVQVLIEHIGNLDRAYEFAERC-----------NEPAVWSQLAK 1113 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CH------HHHHHHHHHHHhhHHHHHHHHHhc-----------CCHHHHHHHHH
Confidence 888999999999999999972 11 111233344677788887777644 23678999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
++...|++++|+.+|.++ .....|..+|.++...|+ |++|+++|..+.+
T Consensus 1114 Aql~~G~~kEAIdsYiKA-----------dD~say~eVa~~~~~lGk--------------------yEEAIeyL~mArk 1162 (1630)
T 1xi4_A 1114 AQLQKGMVKEAIDSYIKA-----------DDPSSYMEVVQAANTSGN--------------------WEELVKYLQMARK 1162 (1630)
T ss_pred HHHhCCCHHHHHHHHHhc-----------CChHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHh
Confidence 999999999999999876 224578889999999999 9999999999887
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
..+.. .+...+|.+|.+++++++ ++.|.+ ..+ ...+..+|..+...|+|++|..+|.++
T Consensus 1163 ~~~e~-------~Idt~LafaYAKl~rlee-le~fI~-------~~n----~ad~~~iGd~le~eg~YeeA~~~Y~kA-- 1221 (1630)
T 1xi4_A 1163 KARES-------YVETELIFALAKTNRLAE-LEEFIN-------GPN----NAHIQQVGDRCYDEKMYDAAKLLYNNV-- 1221 (1630)
T ss_pred hcccc-------cccHHHHHHHHhhcCHHH-HHHHHh-------CCC----HHHHHHHHHHHHhcCCHHHHHHHHHhh--
Confidence 64221 122348999999999885 444421 111 125668999999999999999999985
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH------------------Hhcc-hhhHHHHHHHHHHH
Q psy10738 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ------------------QLMD-RVGEGRACWSLGNA 329 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~------------------~~~~-~~~~~~~~~~La~~ 329 (609)
..|..+|.+|.++|++++|++.+++|..... ..+. ....+..+..++..
T Consensus 1222 ------------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~y 1289 (1630)
T 1xi4_A 1222 ------------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINY 1289 (1630)
T ss_pred ------------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHH
Confidence 3677899999999999999999998854422 0000 00123355688889
Q ss_pred HHHcCChHHHHHHHHHHHHHH
Q psy10738 330 HAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 330 ~~~~g~~~~A~~~~~~al~l~ 350 (609)
|...|.+++|+.++++++.+-
T Consensus 1290 Ye~~G~feEAI~LlE~aL~Le 1310 (1630)
T 1xi4_A 1290 YQDRGYFEELITMLEAALGLE 1310 (1630)
T ss_pred HHHcCCHHHHHHHHHHHhccC
Confidence 999999999999999997653
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.6e-15 Score=132.87 Aligned_cols=147 Identities=12% Similarity=0.057 Sum_probs=108.2
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALY 144 (609)
Q Consensus 65 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~ 144 (609)
.||.++...|++++|+..+++++.. .+....+++.+|.+|...|++++|+.+|++++++.+ ....++.
T Consensus 2 ~LG~~~~~~~~~e~ai~~~~~a~~~------~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p------~~~~a~~ 69 (150)
T 4ga2_A 2 PLGSMRRSKADVERYIASVQGSTPS------PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE------RDPKAHR 69 (150)
T ss_dssp -----CCCHHHHHHHHHHHHHHSCS------HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHH
T ss_pred HhHHHHHHcChHHHHHHHHHHhccc------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHH
Confidence 3677777888888888888887776 666777788888888888888888888888888766 4566888
Q ss_pred HHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHH-H
Q psy10738 145 NLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY-H 223 (609)
Q Consensus 145 ~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~-~ 223 (609)
++|.+|...|+ +++|+.+|++++++ .+....++.++|.+|...|++++|... +
T Consensus 70 ~lg~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~~~~~~aa~~~~ 123 (150)
T 4ga2_A 70 FLGLLYELEEN--------------------TDKAVECYRRSVEL------NPTQKDLVLKIAELLCKNDVTDGRAKYWV 123 (150)
T ss_dssp HHHHHHHHTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHCSSSSHHHHHH
T ss_pred HHHHHHHHcCc--------------------hHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 88888888888 88888888888877 344566788888888888888776654 5
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 224 QERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 224 ~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
++++++.|.... ++...+.++...|+
T Consensus 124 ~~al~l~P~~~~------~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 124 ERAAKLFPGSPA------VYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHSTTCHH------HHHHHHHHHHTCCC
T ss_pred HHHHHhCcCCHH------HHHHHHHHHHHhCc
Confidence 788887665433 56666777666654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=6.5e-15 Score=131.17 Aligned_cols=145 Identities=14% Similarity=0.169 Sum_probs=122.7
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
|.++...|++++|+..+++++...|+++ ..++.+|.+|+..|++++|+.++++++++ .|..+.++..+|.
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~p~~~----~~~~~la~~y~~~~~~~~A~~~~~~al~~------~p~~~~a~~~lg~ 73 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSPRQKS----IKGFYFAKLYYEAKEYDLAKKYICTYINV------QERDPKAHRFLGL 73 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSHHHHH----TTHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHH
T ss_pred HHHHHHcChHHHHHHHHHHhcccCcccH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHH
Confidence 5666778899999999999988777653 37789999999999999999999999999 7888999999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH-HHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY-YEQNL 187 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~-~~~al 187 (609)
+|...|++++|+.+|++++++.+ ....+++++|.+|...|+ +++|... +++++
T Consensus 74 ~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~aa~~~~~~al 127 (150)
T 4ga2_A 74 LYELEENTDKAVECYRRSVELNP------TQKDLVLKIAELLCKNDV--------------------TDGRAKYWVERAA 127 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHCS--------------------SSSHHHHHHHHHH
T ss_pred HHHHcCchHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCC--------------------hHHHHHHHHHHHH
Confidence 99999999999999999999876 556789999999999999 8776665 58899
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 188 ALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
++ .|....++..++.++...|+
T Consensus 128 ~l------~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 128 KL------FPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HH------STTCHHHHHHHHHHHHTCCC
T ss_pred Hh------CcCCHHHHHHHHHHHHHhCc
Confidence 88 34455678888888877775
|
| >4g5s_E PINS homolog, G-protein-signaling modulator 2; galpha, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 3.62A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.54 E-value=1.4e-15 Score=81.63 Aligned_cols=25 Identities=44% Similarity=0.805 Sum_probs=21.3
Q ss_pred CchHHHHHHhhhcccchhhhhcCCC
Q psy10738 502 DDDLLDMIVGLQSKRMDEQRAALPH 526 (609)
Q Consensus 502 ~~~~~~~l~~~Q~~R~~~qr~~~~~ 526 (609)
+|+|||||++|||+|||||||.+|.
T Consensus 1 dd~ff~ml~kcq~srlddqrcapps 25 (26)
T 4g5s_E 1 DEDFFDILVKCQGSRLDDQRCAPPS 25 (26)
T ss_dssp --CHHHHHHHHSCCCCSSSCBCCC-
T ss_pred ChhHHHHHHHhcccccccccCCCCC
Confidence 5899999999999999999999875
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.7e-13 Score=148.54 Aligned_cols=173 Identities=9% Similarity=-0.028 Sum_probs=131.3
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHH-HHHHhCChHHHHHH
Q psy10738 178 EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL-------LGNFK-------QAIYYHQERLK-IAREFGDKAAERRA 242 (609)
Q Consensus 178 ~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~~~~~~~~~ 242 (609)
.++..|++++... +....+|..+|.++.. .|+++ +|+..|++++. +.+.. ..+
T Consensus 256 ~a~~~y~~al~~~------p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~------~~l 323 (530)
T 2ooe_A 256 RVMFAYEQCLLVL------GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN------MLL 323 (530)
T ss_dssp HHHHHHHHHHHHH------TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC------HHH
T ss_pred HHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc------HHH
Confidence 5666777777763 3446788899998886 79987 88999999886 43322 348
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 322 (609)
+..+|.++...|++++|...|++++.+.+.. ...++..+|.++...|++++|...|.+++...+. ....
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~-----~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~------~~~~ 392 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDID-----PTLVYIQYMKFARRAEGIKSGRMIFKKAREDART------RHHV 392 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC------CTHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccC-----chHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC------chHH
Confidence 8899999999999999999999999864321 1357888999999999999999999999875322 1223
Q ss_pred HHHHHHH-HHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCC
Q psy10738 323 CWSLGNA-HAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 323 ~~~La~~-~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~a 379 (609)
+...+.+ +...|++++|..+|+++++.. +....++..++.++...|+...|
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~------p~~~~~~~~~~~~~~~~g~~~~A 444 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY------GDIPEYVLAYIDYLSHLNEDNNT 444 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH------TTCHHHHHHHHHHHTTTTCHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC------CCCHHHHHHHHHHHHhCCCHhhH
Confidence 4444443 346899999999999999876 44567888899988888876544
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.53 E-value=1.9e-13 Score=130.50 Aligned_cols=89 Identities=9% Similarity=-0.062 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
..++.+|..++..|++++|+..|++++...+ +.+....+++.+|.+|...|++++|+..|+++++..+.. ....
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p---~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~---~~~~ 78 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYP---FGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTH---PNID 78 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT---TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---TTHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC---CChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---CcHH
Confidence 3567777777777777777777777776521 123345677777778877888888888777777765532 2334
Q ss_pred HHHHHHHHHHHHccc
Q psy10738 141 RALYNLGNVYHAKGK 155 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~ 155 (609)
.+++.+|.++...|.
T Consensus 79 ~a~~~~g~~~~~~~~ 93 (225)
T 2yhc_A 79 YVMYMRGLTNMALDD 93 (225)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhhhh
Confidence 567777777766554
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=99.52 E-value=9.6e-13 Score=125.57 Aligned_cols=194 Identities=12% Similarity=-0.030 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..++..|..++..|++++|+..|++++...|.++. ...+++.+|.+|+..|++++|+..|+++++..+. .+....+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~-~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~---~~~~~~a 80 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY-SQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPT---HPNIDYV 80 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT---CTTHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcC---CCcHHHH
Confidence 34566799999999999999999999999887643 3458899999999999999999999999987332 3334568
Q ss_pred HHHHHHHHHH------------------cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCC
Q psy10738 103 SGNLGNTLKV------------------MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQD 164 (609)
Q Consensus 103 ~~~lg~~~~~------------------~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~ 164 (609)
++.+|.++.. .|++++|+..|+++++..|.... ...+...++.+...
T Consensus 81 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~---a~~a~~~l~~~~~~------------ 145 (225)
T 2yhc_A 81 MYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQY---TTDATKRLVFLKDR------------ 145 (225)
T ss_dssp HHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTT---HHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChh---HHHHHHHHHHHHHH------------
Confidence 8899998876 57899999999999887764332 11122222211111
Q ss_pred CCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 165 PGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANS 244 (609)
Q Consensus 165 ~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 244 (609)
.......+|.+|...|++++|+..|+++++..+.. .....++.
T Consensus 146 ----------------------------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~---~~~~~a~~ 188 (225)
T 2yhc_A 146 ----------------------------------LAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDT---QATRDALP 188 (225)
T ss_dssp ----------------------------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTS---HHHHHHHH
T ss_pred ----------------------------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCC---CccHHHHH
Confidence 11233567788888888888888888888886543 23345788
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 245 NLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 245 ~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
.+|.+|..+|++++|+.+++.+....+.
T Consensus 189 ~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 189 LMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 8888888888888888888887766543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.7e-13 Score=125.44 Aligned_cols=177 Identities=18% Similarity=0.129 Sum_probs=145.4
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC----
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG---- 114 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g---- 114 (609)
.+|+.+|+++.+.+ + +.+++.+|.+|...+++++|+.+|+++.+. ..+.+++++|.+|.. +
T Consensus 3 ~eA~~~~~~aa~~g--~----~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~g~~~ 67 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG--D----RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-NPQQA 67 (212)
T ss_dssp -CTTHHHHHHHHTT--C----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-STTSC
T ss_pred chHHHHHHHHHHCC--C----HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-CCCCC
Confidence 35788899998863 4 348899999999999999999999999764 356889999999998 7
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
++++|+.+|+++.+. ....+++++|.+|.. .++ +++|+.+|+++.+.
T Consensus 68 ~~~~A~~~~~~A~~~--------g~~~a~~~Lg~~y~~g~g~~~d--------------------~~~A~~~~~~A~~~- 118 (212)
T 3rjv_A 68 DYPQARQLAEKAVEA--------GSKSGEIVLARVLVNRQAGATD--------------------VAHAITLLQDAARD- 118 (212)
T ss_dssp CHHHHHHHHHHHHHT--------TCHHHHHHHHHHHTCGGGSSCC--------------------HHHHHHHHHHHTSS-
T ss_pred CHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCccC--------------------HHHHHHHHHHHHHc-
Confidence 899999999999653 346689999999987 667 99999999998865
Q ss_pred HHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-C-----CHHHHH
Q psy10738 191 KEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-G-----EYQAAS 260 (609)
Q Consensus 191 ~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~A~ 260 (609)
++......++++||.+|.. .+++++|+.+|+++.+. +... .+++++|.+|... | ++++|+
T Consensus 119 ---~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~------~a~~~Lg~~y~~g~gg~~~~d~~~A~ 188 (212)
T 3rjv_A 119 ---SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTG------YAEYWAGMMFQQGEKGFIEPNKQKAL 188 (212)
T ss_dssp ---TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTT------HHHHHHHHHHHHCBTTTBCCCHHHHH
T ss_pred ---CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCH------HHHHHHHHHHHcCCCCCCCCCHHHHH
Confidence 2222457799999999999 88999999999999875 1112 2788999999865 3 899999
Q ss_pred HHHHHHHHH
Q psy10738 261 EHYKRTLVL 269 (609)
Q Consensus 261 ~~~~~al~~ 269 (609)
.+|+++.+.
T Consensus 189 ~~~~~A~~~ 197 (212)
T 3rjv_A 189 HWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHc
Confidence 999998875
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.45 E-value=4e-13 Score=146.93 Aligned_cols=159 Identities=16% Similarity=0.133 Sum_probs=126.1
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG 114 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g 114 (609)
.|++++|+..|+++++.+|++. .++..+|.++...|++++|+.++++++++ .+....++.++|.+|...|
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g 71 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDF----VAWLMLADAELGMGDTTAGEMAVQRGLAL------HPGHPEAVARLGRVRWTQQ 71 (568)
T ss_dssp -------------------CCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTT------STTCHHHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCC
Confidence 4789999999999999999874 48999999999999999999999999998 6777899999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhC
Q psy10738 115 KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIN 194 (609)
Q Consensus 115 ~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~ 194 (609)
++++|+.+|++++++.+ ....++.++|.+|...|+ +++|+.++++++++
T Consensus 72 ~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~----- 120 (568)
T 2vsy_A 72 RHAEAAVLLQQASDAAP------EHPGIALWLGHALEDAGQ--------------------AEAAAAAYTRAHQL----- 120 (568)
T ss_dssp CHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH-----
T ss_pred CHHHHHHHHHHHHhcCC------CCHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh-----
Confidence 99999999999999865 446789999999999999 99999999999987
Q ss_pred ChHHHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhCC
Q psy10738 195 DTAAQGRACGNLGNTYYLL---GNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 195 ~~~~~~~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~~ 235 (609)
.+....++.++|.++... |++++|+.+++++++..+....
T Consensus 121 -~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 121 -LPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp -CTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred -CCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 334457899999999999 9999999999999998776555
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.1e-12 Score=128.24 Aligned_cols=229 Identities=9% Similarity=-0.019 Sum_probs=189.5
Q ss_pred HHHHHhcCCh-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 29 GERLCKAGDC-RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG--DYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 29 g~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
.......|.+ ++|+.++.++|.++|++.. +++..+.+...+| .+++++.++..++.. .|....+++.
T Consensus 39 ~~a~~~~~e~s~~aL~~t~~~L~~nP~~~t----aWn~R~~~L~~l~~~~~~eeL~~~~~~L~~------nPk~y~aW~~ 108 (306)
T 3dra_A 39 LLALMKAEEYSERALHITELGINELASHYT----IWIYRFNILKNLPNRNLYDELDWCEEIALD------NEKNYQIWNY 108 (306)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCTTSCHHHHHHHHHHHHHH------CTTCCHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCcHHHH----HHHHHHHHHHHcccccHHHHHHHHHHHHHH------CcccHHHHHH
Confidence 3444566666 6899999999999999854 8999999999999 999999999999998 7888899999
Q ss_pred HHHHH----HHc---CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH-
Q psy10738 106 LGNTL----KVM---GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ- 177 (609)
Q Consensus 106 lg~~~----~~~---g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~- 177 (609)
.+.++ ... +++++++.++.++++..+ ....++...+.+....|. ++
T Consensus 109 R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~p------kny~aW~~R~~vl~~l~~--------------------~~~ 162 (306)
T 3dra_A 109 RQLIIGQIMELNNNDFDPYREFDILEAMLSSDP------KNHHVWSYRKWLVDTFDL--------------------HND 162 (306)
T ss_dssp HHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------TTC
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcc--------------------cCh
Confidence 99999 777 789999999999998776 556799999999999998 77
Q ss_pred -HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 178 -EAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN------FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 178 -~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
++++++.++++. .+....++.+.+.+....|. ++++++++.+++...+.... +++.++.++
T Consensus 163 ~~EL~~~~~~i~~------d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~S------aW~y~~~ll 230 (306)
T 3dra_A 163 AKELSFVDKVIDT------DLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPS------TWNYLLGIH 230 (306)
T ss_dssp HHHHHHHHHHHHH------CTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHH------HHHHHHHHH
T ss_pred HHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCcc------HHHHHHHHH
Confidence 999999999876 45556789999999998887 99999999999988665544 888999999
Q ss_pred HHhCCHHH-HHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 251 IFLGEYQA-ASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLI 308 (609)
Q Consensus 251 ~~~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 308 (609)
...|+... ...++.+++.+.. .......++..+|.+|...|+.++|+++|+.+..
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~---~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 231 ERFDRSITQLEEFSLQFVDLEK---DQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCCGGGGHHHHHTTEEGGG---TEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhcCCChHHHHHHHHHHHhccC---CCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 99988544 4456655554320 1122356888999999999999999999998764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.5e-12 Score=111.96 Aligned_cols=110 Identities=18% Similarity=0.229 Sum_probs=99.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+..+|..++..|+|++|+..|+++++.+|.+.. ++..+|.+|..+|++++|+..+++++++ .+....++
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~ 84 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI----LYSNRAACLTKLMEFQRALDDCDTCIRL------DSKFIKGY 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHhhHHHhhccHHHHHHHHHHHHHh------hhhhhHHH
Confidence 4456799999999999999999999999998854 8999999999999999999999999999 78889999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
+++|.++..+|++++|+.+|++++++.| ....++..++.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P------~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDP------SNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCc------CCHHHHHHHHHh
Confidence 9999999999999999999999999877 445566677665
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.7e-12 Score=139.13 Aligned_cols=225 Identities=9% Similarity=0.014 Sum_probs=164.2
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-------hCCHH-------HHHHHHHHHHH-HHHHcCChhhHHHHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY-------LGDYQ-------KAMQYHKQDLT-LARNMEDKLGEAKSS 103 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~-------~g~~~-------~A~~~~~~al~-~~~~~~d~~~~~~a~ 103 (609)
..|+..|++++...|.++. +|..+|..+.. .|+++ +|+..+++++. + .|....++
T Consensus 255 ~~a~~~y~~al~~~p~~~~----~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~------~p~~~~l~ 324 (530)
T 2ooe_A 255 KRVMFAYEQCLLVLGHHPD----IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL------LKKNMLLY 324 (530)
T ss_dssp HHHHHHHHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT------CSSCHHHH
T ss_pred HHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh------CcccHHHH
Confidence 4788999999999998754 88889988876 78887 88888888876 4 45667889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+|.++...|++++|...|++++++.+. ....++..+|.++...|+ +++|...|
T Consensus 325 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~-----~~~~~~~~~~~~~~~~~~--------------------~~~A~~~~ 379 (530)
T 2ooe_A 325 FAYADYEESRMKYEKVHSIYNRLLAIEDI-----DPTLVYIQYMKFARRAEG--------------------IKSGRMIF 379 (530)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSSS-----CHHHHHHHHHHHHHHHHH--------------------HHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhCcccc-----CchHHHHHHHHHHHHhcC--------------------HHHHHHHH
Confidence 99999999999999999999999875331 123578888888888888 89999999
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNT-YYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEH 262 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~-~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 262 (609)
+++++.. +.....+...+.+ +...|++++|..+|+++++..+... .++..++.++...|++++|..+
T Consensus 380 ~~Al~~~------~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~------~~~~~~~~~~~~~g~~~~Ar~~ 447 (530)
T 2ooe_A 380 KKAREDA------RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP------EYVLAYIDYLSHLNEDNNTRVL 447 (530)
T ss_dssp HHHHTCT------TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHTTTTCHHHHHHH
T ss_pred HHHHhcc------CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH------HHHHHHHHHHHhCCCHhhHHHH
Confidence 8887642 1112233333433 3357888888888888887765332 2677778888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 263 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
|++++...+. ++.....++...+......|+.+.+..++.++++..++
T Consensus 448 ~~~al~~~~~--~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 448 FERVLTSGSL--PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHSCCS--CGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred HHHHHhccCC--CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 8888765321 11122345555566667778888888888888777764
|
| >4g5o_E G-protein-signaling modulator 2; galphai, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 2.90A {Mus musculus} PDB: 4g5q_E* 4g5r_E* | Back alignment and structure |
|---|
Probab=99.41 E-value=4.6e-14 Score=75.04 Aligned_cols=24 Identities=58% Similarity=0.880 Sum_probs=20.9
Q ss_pred chhHHHHHHHhhccccchhcccCC
Q psy10738 567 DEDFFSLITRLQSGRMEDQRATVP 590 (609)
Q Consensus 567 ~~~~~~~~~~~~~~~~~~~~~~~~ 590 (609)
||||||||+|+|++||||||+-+.
T Consensus 1 dedffslilrsqakrmdeqrvllq 24 (26)
T 4g5o_E 1 DEDFFSLILRSQAKRMDEQRVLLQ 24 (26)
T ss_dssp -CCHHHHHHHHHHCSCGGGCBCC-
T ss_pred CchHHHHHHHHHHHhhhHHHhhhc
Confidence 689999999999999999999764
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.41 E-value=4.5e-13 Score=122.51 Aligned_cols=58 Identities=7% Similarity=-0.007 Sum_probs=30.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.|..+...|++++|+..|+++++.+|++.. ++..+|.++...|++++|+..+++++..
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~g~~~~A~~~~~~a~~~ 69 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGD----VKLAKADCLLETKQFELAQELLATIPLE 69 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHH----HHHHHHHHHHHTTCHHHHHHHHTTCCGG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHCCCHHHHHHHHHHhhhc
Confidence 355555555555555555555555555422 4555555555555555555555555443
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=99.41 E-value=9.6e-13 Score=124.37 Aligned_cols=177 Identities=17% Similarity=0.118 Sum_probs=143.1
Q ss_pred HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc--
Q psy10738 77 QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG-- 154 (609)
Q Consensus 77 ~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g-- 154 (609)
.+|+.+|+++.+. ..+.+++.+|.+|...+++++|+.+|+++.+. ..+.+++++|.+|.. +
T Consensus 3 ~eA~~~~~~aa~~--------g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--------g~~~a~~~lg~~y~~-~g~ 65 (212)
T 3rjv_A 3 TEPGSQYQQQAEA--------GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--------GDGDALALLAQLKIR-NPQ 65 (212)
T ss_dssp -CTTHHHHHHHHT--------TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHTTS-STT
T ss_pred chHHHHHHHHHHC--------CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHc-CCC
Confidence 3567778777653 45778999999999999999999999999763 345789999999988 6
Q ss_pred --cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q psy10738 155 --KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLK 228 (609)
Q Consensus 155 --~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~ 228 (609)
+ +++|+.+|+++.+. + ...+++++|.+|.. .+++++|+.+|+++.+
T Consensus 66 ~~~--------------------~~~A~~~~~~A~~~----g----~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~ 117 (212)
T 3rjv_A 66 QAD--------------------YPQARQLAEKAVEA----G----SKSGEIVLARVLVNRQAGATDVAHAITLLQDAAR 117 (212)
T ss_dssp SCC--------------------HHHHHHHHHHHHHT----T----CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTS
T ss_pred CCC--------------------HHHHHHHHHHHHHC----C----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHH
Confidence 6 99999999998642 2 35688999999987 8999999999999986
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHh-C-----CHHH
Q psy10738 229 IAREFGDKAAERRANSNLGNSHIF----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL-R-----DYPT 298 (609)
Q Consensus 229 ~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g-----~~~~ 298 (609)
.. +......++++||.+|.. .+++++|+.+|+++.+. + ++ ..+++.||.+|... | ++++
T Consensus 118 ~~----~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~--~~----~~a~~~Lg~~y~~g~gg~~~~d~~~ 186 (212)
T 3rjv_A 118 DS----ESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-S--RT----GYAEYWAGMMFQQGEKGFIEPNKQK 186 (212)
T ss_dssp ST----TSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-S--CT----THHHHHHHHHHHHCBTTTBCCCHHH
T ss_pred cC----CCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-C--CC----HHHHHHHHHHHHcCCCCCCCCCHHH
Confidence 42 211234589999999999 88999999999999875 1 12 44789999999764 3 8999
Q ss_pred HHHHHHHHHHH
Q psy10738 299 AIDYHLRHLII 309 (609)
Q Consensus 299 A~~~~~~al~~ 309 (609)
|+.+|+++.+.
T Consensus 187 A~~~~~~A~~~ 197 (212)
T 3rjv_A 187 ALHWLNVSCLE 197 (212)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 99999998865
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-12 Score=128.28 Aligned_cols=167 Identities=13% Similarity=0.083 Sum_probs=118.2
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
..+..+|..+...|++++|+..|++++.. .|....+++.+|.++...|++++|+..+++++...+ ...
T Consensus 118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p------~~~ 185 (287)
T 3qou_A 118 ELXAQQAMQLMQESNYTDALPLLXDAWQL------SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ------DTR 185 (287)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC------SHH
T ss_pred hhHHHHHHHHHhCCCHHHHHHHHHHHHHh------CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc------chH
Confidence 35677777777777777777777777777 666677777777777777777777777777765543 223
Q ss_pred HHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 141 RALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 141 ~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
......+..+...++ ...|+..+++++.. .+....+++++|.++...|++++|+
T Consensus 186 ~~~~~~~~~l~~~~~--------------------~~~a~~~l~~al~~------~P~~~~~~~~la~~l~~~g~~~~A~ 239 (287)
T 3qou_A 186 YQGLVAQIELLXQAA--------------------DTPEIQQLQQQVAE------NPEDAALATQLALQLHQVGRNEEAL 239 (287)
T ss_dssp HHHHHHHHHHHHHHT--------------------SCHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhhcc--------------------cCccHHHHHHHHhc------CCccHHHHHHHHHHHHHcccHHHHH
Confidence 445555666666666 66777777777766 3445567777788888888888888
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
..|.+++...+...+ ..++.++|.++...|+.++|...|++++..
T Consensus 240 ~~l~~~l~~~p~~~~----~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 240 ELLFGHLRXDLTAAD----GQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHHHHHCTTGGG----GHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhccccccc----chHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 888887777655421 236777777788888877787777777754
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.41 E-value=2e-14 Score=146.23 Aligned_cols=192 Identities=15% Similarity=0.139 Sum_probs=150.8
Q ss_pred CChHHHHHHHHH----HHHhCCcchhHHHHHHHHHHHHHH------------HhCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 36 GDCRAGVAFFQA----AIQAGTDDLRTLSAIYSQLGNAYF------------YLGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 36 g~~~~A~~~~~~----al~~~~~~~~~~a~~~~~lg~~~~------------~~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
+.+++|+..+.. ++.+.|.. +|..+|.... .++++++|+..+++++.. .+..
T Consensus 79 ~~~e~al~~~~~Ge~~~l~i~p~~------ayg~~g~~~~~i~~~~~l~f~~~L~~~~~A~~~~~~a~~~------~p~~ 146 (336)
T 1p5q_A 79 YGLERAIQRMEKGEHSIVYLKPSY------AFGSVGKEKFQIPPNAELKYELHLKSFEKAKESWEMNSEE------KLEQ 146 (336)
T ss_dssp HHHHHHHTTCCTTCEEEEEECTTT------TTTTTCBGGGTBCSSCCEEEEEEEEEEECCCCGGGCCHHH------HHHH
T ss_pred hHHHHHHhcCCCCCeEEEEECCcc------ccCcCCCCccCCCCCCeEEEEEEEeecccccchhcCCHHH------HHHH
Confidence 356677777777 66666653 3444444432 456778888888888877 7788
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND---------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 170 (609)
+.++..+|.++...|++++|+.+|++++.+.+...+ ......++.++|.+|...|+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~--------------- 211 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQA--------------- 211 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTC---------------
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCC---------------
Confidence 999999999999999999999999999999875421 12336789999999999999
Q ss_pred HhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 171 EVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSH 250 (609)
Q Consensus 171 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 250 (609)
+++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+|++++++.+... .++.++|.++
T Consensus 212 -----~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~------~a~~~l~~~~ 274 (336)
T 1p5q_A 212 -----FSAAIESCNKALEL------DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNK------AAKTQLAVCQ 274 (336)
T ss_dssp -----HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH------HHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH------HHHHHHHHHH
Confidence 99999999999987 344567899999999999999999999999998865433 3788899999
Q ss_pred HHhCCHHHH-HHHHHHHHHHHH
Q psy10738 251 IFLGEYQAA-SEHYKRTLVLAQ 271 (609)
Q Consensus 251 ~~~g~~~~A-~~~~~~al~~~~ 271 (609)
...|++++| ...|++.+....
T Consensus 275 ~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhh
Confidence 999999888 456666655443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-13 Score=141.03 Aligned_cols=95 Identities=13% Similarity=0.041 Sum_probs=53.3
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHhcchhhHHHH
Q psy10738 245 NLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL--LRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322 (609)
Q Consensus 245 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 322 (609)
.+..+|...|.+++|+.++++++.+.+.. ..++..+|.+|.+ .++..++++.|...+.+.+-+. .......
T Consensus 212 ~lv~~Yek~G~~eEai~lLe~aL~le~ah------~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~-~~~~~~~ 284 (449)
T 1b89_A 212 ELINYYQDRGYFEELITMLEAALGLERAH------MGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLR-AAEQAHL 284 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTSTTCC------HHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHH-HHHTTTC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhCCcHHH------HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHH-HHHHHHH
Confidence 35566667777777777777666544321 4455555555543 3344455555544443333110 0123446
Q ss_pred HHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 323 CWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 323 ~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
|..+..+|..-++++.|....-++
T Consensus 285 w~e~~~ly~~~~e~d~A~~tm~~h 308 (449)
T 1b89_A 285 WAELVFLYDKYEEYDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhhchHHHHHHHHHhC
Confidence 777888888888888887654443
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=99.40 E-value=3.1e-12 Score=126.96 Aligned_cols=165 Identities=12% Similarity=0.042 Sum_probs=107.2
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..+++++.. .+.......
T Consensus 120 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~la~~~~~~g~~~~A~~~l~~~~~~------~p~~~~~~~ 189 (287)
T 3qou_A 120 XAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE----IGLLLAETLIALNRSEDAEAVLXTIPLQ------DQDTRYQGL 189 (287)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH----HHHHHHHHHHHTTCHHHHHHHHTTSCGG------GCSHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh----HHHHHHHHHHHCCCHHHHHHHHHhCchh------hcchHHHHH
Confidence 344566677777777777777777777776633 6667777777777777777777766555 333444555
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
..+..+...++.++|+..+++++...+ ....+++++|.++...|+ +++|+..|.
T Consensus 190 ~~~~~l~~~~~~~~a~~~l~~al~~~P------~~~~~~~~la~~l~~~g~--------------------~~~A~~~l~ 243 (287)
T 3qou_A 190 VAQIELLXQAADTPEIQQLQQQVAENP------EDAALATQLALQLHQVGR--------------------NEEALELLF 243 (287)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHH
T ss_pred HHHHHHHhhcccCccHHHHHHHHhcCC------ccHHHHHHHHHHHHHccc--------------------HHHHHHHHH
Confidence 556666666667777777777766655 445567777777777777 777777777
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
+++...+.. ....++.++|.++..+|+.++|+..|++++..
T Consensus 244 ~~l~~~p~~----~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~~ 284 (287)
T 3qou_A 244 GHLRXDLTA----ADGQTRXTFQEILAALGTGDALASXYRRQLYA 284 (287)
T ss_dssp HHHHHCTTG----GGGHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHhccccc----ccchHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Confidence 766652211 11456677777777777777777777766553
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.39 E-value=3.1e-12 Score=109.96 Aligned_cols=113 Identities=19% Similarity=0.244 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+..+..+|..|+..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+..|++++++.+ .
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p------~ 79 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR------DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDS------K 79 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh------h
Confidence 4678999999999999999999999999999 788899999999999999999999999999999866 5
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
...+++++|.+|..+|+ +++|+..|++++++ .|....++.+++.+
T Consensus 80 ~~~a~~~lg~~~~~~~~--------------------~~~A~~~~~~al~l------~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 80 FIKGYIRKAACLVAMRE--------------------WSKAQRAYEDALQV------DPSNEEAREGVRNC 124 (126)
T ss_dssp CHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHH------CcCCHHHHHHHHHh
Confidence 56799999999999999 99999999999998 34445667777665
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.38 E-value=1.4e-13 Score=141.23 Aligned_cols=240 Identities=15% Similarity=0.159 Sum_probs=97.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLK 111 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~ 111 (609)
.-..|+.++|.+++++. ++ ..+|..+|.++...|++++|++.|.++- ....+..++..+.
T Consensus 13 l~~~~~ld~A~~fae~~-----~~----~~vWs~La~A~l~~g~~~eAIdsfika~-----------D~~~y~~V~~~ae 72 (449)
T 1b89_A 13 IEHIGNLDRAYEFAERC-----NE----PAVWSQLAKAQLQKGMVKEAIDSYIKAD-----------DPSSYMEVVQAAN 72 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHccCHHHHHHHHHhC-----CC----hHHHHHHHHHHHHcCCHHHHHHHHHcCC-----------CHHHHHHHHHHHH
Confidence 44678899999999887 12 2388999999999999999999997631 2346778888889
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 112 VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 112 ~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
..|++++|+.+++.+.+..+ .+.+...++.+|...|+ +.++..++..
T Consensus 73 ~~g~~EeAi~yl~~ark~~~-------~~~i~~~Li~~Y~Klg~--------------------l~e~e~f~~~------ 119 (449)
T 1b89_A 73 TSGNWEELVKYLQMARKKAR-------ESYVETELIFALAKTNR--------------------LAELEEFING------ 119 (449)
T ss_dssp -------------------------------------------C--------------------HHHHTTTTTC------
T ss_pred hCCCHHHHHHHHHHHHHhCc-------cchhHHHHHHHHHHhCC--------------------HHHHHHHHcC------
Confidence 99999999999998877432 14567788999999999 8888877742
Q ss_pred HhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 192 ~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
+. ..++.++|..+...|.|++|+.+|.++ . .+..+|.++..+|+|++|++.++++.
T Consensus 120 -----pn-~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~------n~~~LA~~L~~Lg~yq~AVea~~KA~---- 175 (449)
T 1b89_A 120 -----PN-NAHIQQVGDRCYDEKMYDAAKLLYNNV--------S------NFGRLASTLVHLGEYQAAVDGARKAN---- 175 (449)
T ss_dssp -----C-----------------CTTTHHHHHHHT--------T------CHHHHHHHHHTTTCHHHHHHHHHHHT----
T ss_pred -----Cc-HHHHHHHHHHHHHcCCHHHHHHHHHHh--------h------hHHHHHHHHHHhccHHHHHHHHHHcC----
Confidence 11 238999999999999999999999976 2 67889999999999999999999881
Q ss_pred HcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 272 DLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 272 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
...+|...+.++...|+++.|..+..... .. +.-...+..+|.+.|.+++|+.++++++.+-
T Consensus 176 -------~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~---------ad~l~~lv~~Yek~G~~eEai~lLe~aL~le- 237 (449)
T 1b89_A 176 -------STRTWKEVCFACVDGKEFRLAQMCGLHIV-VH---------ADELEELINYYQDRGYFEELITMLEAALGLE- 237 (449)
T ss_dssp -------CHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TC---------HHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-
T ss_pred -------CchhHHHHHHHHHHcCcHHHHHHHHHHHH-hC---------HhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc-
Confidence 15677888899999999999976665411 11 1123458889999999999999999987643
Q ss_pred HcCCCchHHHHHHHHHHHHH
Q psy10738 352 QLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 352 ~~~~~~~~~~a~~~la~l~~ 371 (609)
+....+...|+.+|.
T Consensus 238 -----~ah~~~ftel~il~~ 252 (449)
T 1b89_A 238 -----RAHMGMFTELAILYS 252 (449)
T ss_dssp -----TCCHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHH
Confidence 344566666666664
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=99.38 E-value=5.9e-13 Score=121.74 Aligned_cols=62 Identities=15% Similarity=0.036 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
+++++|.++...|++++|+.+|++++...+...+ ..++..+|.++...|++++|+..|++++
T Consensus 110 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 110 LACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----THHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 4444555555555555555555544443332111 2244444555555555555555555444
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.37 E-value=7.3e-12 Score=107.77 Aligned_cols=108 Identities=16% Similarity=0.179 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-C
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-D 275 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-~ 275 (609)
...+.++.++|.+++..|+|++|+.+|++++++.+.. ..++.++|.+|..+|++++|+.++++++++.+... .
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~------~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 78 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSN------ITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRAD 78 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchh
Confidence 4456788999999999999999999999999986543 34899999999999999999999999999998864 4
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 276 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 276 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
....+.++..+|.++..+|++++|+.+|++++...
T Consensus 79 ~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~ 113 (127)
T 4gcn_A 79 YKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEF 113 (127)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45567889999999999999999999999998754
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=2.5e-12 Score=140.65 Aligned_cols=157 Identities=14% Similarity=0.057 Sum_probs=123.5
Q ss_pred hCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 73 LGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 73 ~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
.|++++|+.+++++++. .+....++..+|.++...|++++|+.+|++++++.+ ....++.++|.+|..
T Consensus 2 ~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~ 69 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH------RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHP------GHPEAVARLGRVRWT 69 (568)
T ss_dssp -------------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST------TCHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHH
Confidence 47899999999999988 677789999999999999999999999999998765 456789999999999
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
.|+ +++|+.++++++++ .+....++.++|.+|...|++++|+.++++++++.+.
T Consensus 70 ~g~--------------------~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~ 123 (568)
T 2vsy_A 70 QQR--------------------HAEAAVLLQQASDA------APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE 123 (568)
T ss_dssp TTC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred CCC--------------------HHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 999 99999999999987 3344678999999999999999999999999998654
Q ss_pred hCChHHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHc
Q psy10738 233 FGDKAAERRANSNLGNSHIFL---GEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 233 ~~~~~~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~~~~ 273 (609)
.. .++.++|.++... |++++|+.+++++++..+..
T Consensus 124 ~~------~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 161 (568)
T 2vsy_A 124 EP------YITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGA 161 (568)
T ss_dssp CH------HHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCC
T ss_pred CH------HHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcc
Confidence 32 3889999999999 99999999999999887654
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.35 E-value=7.8e-13 Score=117.48 Aligned_cols=112 Identities=8% Similarity=0.066 Sum_probs=90.9
Q ss_pred HHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122 (609)
Q Consensus 43 ~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~ 122 (609)
..+++++.++|++ ..+++.+|.+++..|++++|+.+|++++.+ .|..+.+|.++|.+|...|++++|+.+
T Consensus 23 ~~l~~al~l~p~~----~~~~~~lg~~~~~~g~~~eA~~~~~~al~~------~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 23 ATLKDINAIPDDM----MDDIYSYAYDFYNKGRIEEAEVFFRFLCIY------DFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp CCTGGGCCSCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CCHHHHhCCCHHH----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 4455566666665 347888888888888888888888888888 777888888888888888888888888
Q ss_pred HHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 123 CKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 123 ~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
|++++.+.+ ....+++++|.+|...|+ +++|+.+|++++++.
T Consensus 93 ~~~al~l~P------~~~~~~~~lg~~~~~lg~--------------------~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 93 YAVAFALGK------NDYTPVFHTGQCQLRLKA--------------------PLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHHHHSS------SCCHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHC
T ss_pred HHHHHhhCC------CCcHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhC
Confidence 888888876 345678888888888888 888888888888774
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.35 E-value=3.7e-11 Score=102.80 Aligned_cols=120 Identities=14% Similarity=0.096 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...|..++..|++++|+..|+++++..|++. .++..+|.++...|++++|+..+++++.+ .+....+
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 74 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA----RGYSNRAAALAKLMSFPEAIADCNKAIEK------DPNFVRA 74 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCcHHH
Confidence 3556679999999999999999999999999885 48999999999999999999999999999 7778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
++.+|.++...|++++|+.+|++++.+.+...+.+....++..++.+...
T Consensus 75 ~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~ 124 (126)
T 3upv_A 75 YIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQ 124 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999999997665555666677676666543
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-11 Score=122.12 Aligned_cols=225 Identities=8% Similarity=-0.049 Sum_probs=184.1
Q ss_pred HHhCCH-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Q psy10738 71 FYLGDY-QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG--KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLG 147 (609)
Q Consensus 71 ~~~g~~-~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg 147 (609)
...|++ ++|+..+.+++.+ .|....+++..+.++...| .+++++.++.+++...+ ....+++..+
T Consensus 43 ~~~~e~s~~aL~~t~~~L~~------nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nP------k~y~aW~~R~ 110 (306)
T 3dra_A 43 MKAEEYSERALHITELGINE------LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNE------KNYQIWNYRQ 110 (306)
T ss_dssp HHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCT------TCCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHH------CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCc------ccHHHHHHHH
Confidence 344444 7899999999999 8999999999999999999 99999999999998877 4456788888
Q ss_pred HHH----HHc---ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH--H
Q psy10738 148 NVY----HAK---GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK--Q 218 (609)
Q Consensus 148 ~~~----~~~---g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~--~ 218 (609)
.++ ... ++ +++++.++.++++. .+....++.+.+.+....|.++ +
T Consensus 111 ~iL~~~~~~l~~~~~--------------------~~~EL~~~~~~l~~------~pkny~aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 111 LIIGQIMELNNNDFD--------------------PYREFDILEAMLSS------DPKNHHVWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp HHHHHHHHHTTTCCC--------------------THHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHhccccCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcccChHH
Confidence 888 555 55 89999999999987 4555779999999999999998 9
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE------YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL 292 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 292 (609)
+++++.++++..+.+.. ++...+.+....|. ++++++++.+++...+.. ..+++.++.++..
T Consensus 165 EL~~~~~~i~~d~~N~s------AW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n------~SaW~y~~~ll~~ 232 (306)
T 3dra_A 165 ELSFVDKVIDTDLKNNS------AWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQN------PSTWNYLLGIHER 232 (306)
T ss_dssp HHHHHHHHHHHCTTCHH------HHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSC------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCC------ccHHHHHHHHHHh
Confidence 99999999987554433 88888999888887 999999999999887764 6788899999999
Q ss_pred hCCHHH-HHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 293 LRDYPT-AIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 293 ~g~~~~-A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
.|+... ...++.+++.+. ........++..+|.+|...|+.++|+++++.+.+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~---~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 233 FDRSITQLEEFSLQFVDLE---KDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCCGGGGHHHHHTTEEGG---GTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCChHHHHHHHHHHHhcc---CCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 998555 445666555432 01133456899999999999999999999999765
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.1e-12 Score=133.40 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=132.1
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------ChhhHHHHHHH
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---------DKLGEAKSSGN 105 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------d~~~~~~a~~~ 105 (609)
.+++++|+..|++++...|.+ +.++..+|.+++..|++++|+.+|++++.+..... ..+..+.++.+
T Consensus 126 L~~~~~A~~~~~~a~~~~p~~----a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 201 (336)
T 1p5q_A 126 LKSFEKAKESWEMNSEEKLEQ----STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLN 201 (336)
T ss_dssp EEEEECCCCGGGCCHHHHHHH----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHH
T ss_pred EeecccccchhcCCHHHHHHH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHH
Confidence 456677777777777766554 55889999999999999999999999999843321 01223789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.+|..+|++++|+.+|++++.+.+ ....+++++|.+|...|+ +++|+.+|++
T Consensus 202 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~ 255 (336)
T 1p5q_A 202 LAMCHLKLQAFSAAIESCNKALELDS------NNEKGLSRRGEAHLAVND--------------------FELARADFQK 255 (336)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHCCC--------------------HHHHHHHHHH
Confidence 99999999999999999999999876 456799999999999999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH-HHHHHHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA-IYYHQERLKIAR 231 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A-~~~~~~al~~~~ 231 (609)
++++ .+....++.++|.++..+|++++| ...|++.+....
T Consensus 256 al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 296 (336)
T 1p5q_A 256 VLQL------YPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFERLA 296 (336)
T ss_dssp HHHH------CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 9988 334456899999999999999999 556777665543
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.33 E-value=3.3e-11 Score=103.60 Aligned_cols=105 Identities=20% Similarity=0.322 Sum_probs=96.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC-CcH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN-DKL 137 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~-d~~ 137 (609)
.+.++..+|..++..|+|++|+.+|++++++ .|..+.++.++|.+|..+|++++|+.++++++++.+... ...
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~------~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 80 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIEL------DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYK 80 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhH
Confidence 4668899999999999999999999999999 778899999999999999999999999999999998764 345
Q ss_pred HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 138 SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
..+.++.++|.++...|+ +++|+.+|++++..
T Consensus 81 ~~a~~~~~lg~~~~~~~~--------------------~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 81 LIAKAMSRAGNAFQKQND--------------------LSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHhh
Confidence 678899999999999999 99999999999875
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.30 E-value=9.6e-11 Score=104.90 Aligned_cols=140 Identities=16% Similarity=0.207 Sum_probs=119.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
....+...|..++..|++++|+..|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+...
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~ 81 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYI 81 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh----HHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccH
Confidence 344566779999999999999999999999999874 48899999999999999999999999998 66778
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
.++..+|.++...|++++|+.++++++.+.+.. .....+..++..+...|+ +++|+
T Consensus 82 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~----~~~~~~~~~~~~~~~~~~--------------------~~~A~ 137 (166)
T 1a17_A 82 KGYYRRAASNMALGKFRAALRDYETVVKVKPHD----KDAKMKYQECNKIVKQKA--------------------FERAI 137 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC----HHHHHHHHHHHHHHHHHH--------------------HHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHHHHHH--------------------HHHHH
Confidence 899999999999999999999999999886521 223344566666888899 99999
Q ss_pred HHHHHHHHHHHHhC
Q psy10738 181 KYYEQNLALMKEIN 194 (609)
Q Consensus 181 ~~~~~al~~~~~~~ 194 (609)
.++.++..+.....
T Consensus 138 ~~~~~~~~~~~~~~ 151 (166)
T 1a17_A 138 AGDEHKRSVVDSLD 151 (166)
T ss_dssp HHHHHHHHHHHHCC
T ss_pred HcccchHHHhcccc
Confidence 99999888876653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.30 E-value=2.8e-11 Score=113.76 Aligned_cols=136 Identities=21% Similarity=0.171 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...++..|..++..|++++|+..|++++ .+ + +.+++.+|.+|...|++++|+.++++++.+ .+....
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~ 72 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQ--DP-H----SRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLAV 72 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-C----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-C----hHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CccchH
Confidence 3456677999999999999999999996 33 2 458999999999999999999999999998 677789
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN----------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEE 171 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~----------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~ 171 (609)
++.++|.+|...|++++|+.+|++++.+.+... ..+....+++++|.+|...|+
T Consensus 73 ~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---------------- 136 (213)
T 1hh8_A 73 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE---------------- 136 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC----------------
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC----------------
Confidence 999999999999999999999999999877544 444567899999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~ 190 (609)
+++|+.++++++.+.
T Consensus 137 ----~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 137 ----WKKAEEQLALATSMK 151 (213)
T ss_dssp ----HHHHHHHHHHHHTTC
T ss_pred ----HHHHHHHHHHHHHcC
Confidence 999999999998874
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-12 Score=114.66 Aligned_cols=104 Identities=14% Similarity=0.061 Sum_probs=82.0
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.|....+++.+|.++...|++++|+.+|++++.+.| ....++.++|.+|...|+
T Consensus 32 ~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P------~~~~~~~~lg~~~~~~g~-------------------- 85 (151)
T 3gyz_A 32 PDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDF------YNVDYIMGLAAIYQIKEQ-------------------- 85 (151)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHcc--------------------
Confidence 677778888888888888888888888888888766 456678888888888888
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
|++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+|++++++.+
T Consensus 86 ~~~Ai~~~~~al~l------~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 86 FQQAADLYAVAFAL------GKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHHHHHHHH------SSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHhh------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 88888888888877 333456788888888888888888888888887653
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.30 E-value=3.3e-11 Score=103.28 Aligned_cols=130 Identities=40% Similarity=0.675 Sum_probs=94.3
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+ ....
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~ 70 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------RSAE 70 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHc------CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCC------CchH
Confidence 5677788888888888888888887776 444566777788888888888888888887776543 2345
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~ 221 (609)
++..+|.++...|+ +++|+.++++++... +....++..+|.++...|++++|+.
T Consensus 71 ~~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~la~~~~~~~~~~~A~~ 124 (136)
T 2fo7_A 71 AWYNLGNAYYKQGD--------------------YDEAIEYYQKALELD------PRSAEAWYNLGNAYYKQGDYDEAIE 124 (136)
T ss_dssp HHHHHHHHHHTTTC--------------------HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHTTTCHHHHHH
T ss_pred HHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHHccHHHHHH
Confidence 66777888888887 888888887777652 2224466777777777777777777
Q ss_pred HHHHHHHH
Q psy10738 222 YHQERLKI 229 (609)
Q Consensus 222 ~~~~al~~ 229 (609)
++++++..
T Consensus 125 ~~~~~~~~ 132 (136)
T 2fo7_A 125 YYQKALEL 132 (136)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHcc
Confidence 77777654
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=2.2e-10 Score=114.30 Aligned_cols=232 Identities=10% Similarity=-0.042 Sum_probs=180.5
Q ss_pred HHHHHhcCChH-HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHcCChh
Q psy10738 29 GERLCKAGDCR-AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD----------YQKAMQYHKQDLTLARNMEDKL 97 (609)
Q Consensus 29 g~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~d~~ 97 (609)
.......|+++ +|+.++.+++..+|++.. +|+..+.+...++. +++++.++..++.. .|
T Consensus 36 ~~~~~~~~e~s~eaL~~t~~~L~~nP~~yt----aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~------~P 105 (331)
T 3dss_A 36 VFQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NP 105 (331)
T ss_dssp HHHHHHTTCCSHHHHHHHHHHHTTCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CT
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHh------CC
Confidence 34445678876 799999999999999854 78888888877765 68888999988887 78
Q ss_pred hHHHHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 98 GEAKSSGNLGNTLKVMGK--YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 98 ~~~~a~~~lg~~~~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
....+|...+.++...|. +++++.++.++++..+ ....++...+.+....|..
T Consensus 106 Kny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dp------rNy~AW~~R~~vl~~l~~~------------------- 160 (331)
T 3dss_A 106 KSYGTWHHRCWLLSRLPEPNWARELELCARFLEADE------RNFHCWDYRRFVAAQAAVA------------------- 160 (331)
T ss_dssp TCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTCC-------------------
T ss_pred CCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCcC-------------------
Confidence 889999999999999994 8999999999999876 5567899999999998871
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL--------------GNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
++++++++.++++. .+....++.+++.++..+ +.++++++++.+++.+.+....
T Consensus 161 ~~eel~~~~~~I~~------~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~S------ 228 (331)
T 3dss_A 161 PAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS------ 228 (331)
T ss_dssp HHHHHHHHHHHHHH------CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHH------
T ss_pred HHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHH------
Confidence 48999999999876 455567889999888877 5689999999999998776544
Q ss_pred HHHHHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHH
Q psy10738 242 ANSNLGNSHIFL-----------GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYT---LLRDYPTAIDYHLRHL 307 (609)
Q Consensus 242 ~~~~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~---~~g~~~~A~~~~~~al 307 (609)
+++.+..++... +.++++++++.+.+++.++. ..++..++.+.. ..|..++...++.+.+
T Consensus 229 aW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~------~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~ 302 (331)
T 3dss_A 229 AWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN------KWCLLTIILLMRALDPLLYEKETLQYFSTLK 302 (331)
T ss_dssp HHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc------chHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 555444444443 45788999999998887753 223333333222 3577888889998888
Q ss_pred HHHHHh
Q psy10738 308 IIAQQL 313 (609)
Q Consensus 308 ~~~~~~ 313 (609)
++.+--
T Consensus 303 ~~Dp~r 308 (331)
T 3dss_A 303 AVDPMR 308 (331)
T ss_dssp HHCGGG
T ss_pred HhCcch
Confidence 876653
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=99.29 E-value=1.3e-11 Score=115.92 Aligned_cols=137 Identities=17% Similarity=0.085 Sum_probs=119.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
...++++|.++...|++++|+.+|++++. . ...++.++|.+|...|++++|+.+|++++.+.+..
T Consensus 6 ~~~~~~~g~~~~~~~~~~~A~~~~~~a~~-----~----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------ 70 (213)
T 1hh8_A 6 AISLWNEGVLAADKKDWKGALDAFSAVQD-----P----HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------ 70 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSSS-----C----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHcC-----C----ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc------
Confidence 45678999999999999999999999852 1 23589999999999999999999999999986543
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc----------chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM----------DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l 349 (609)
..++..+|.+|...|++++|+.++++++.+.+... .......++..+|.+|..+|++++|+.++++++++
T Consensus 71 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 71 AVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 67899999999999999999999999999876544 33445679999999999999999999999999987
Q ss_pred HH
Q psy10738 350 SK 351 (609)
Q Consensus 350 ~~ 351 (609)
..
T Consensus 151 ~p 152 (213)
T 1hh8_A 151 KS 152 (213)
T ss_dssp CC
T ss_pred Cc
Confidence 64
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.29 E-value=3.5e-11 Score=102.96 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
+..+..+|..++..|++++|+.+|++++.+.+... .++.++|.++...|++++|+.++++++.+.+..
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~------ 71 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA------RGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF------ 71 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh------HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCc------
Confidence 44566666666666667777666666666544322 366666666666666666666666666655432
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH 330 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~ 330 (609)
..+++.+|.++...|++++|+.++++++.+.++.........++..++.+.
T Consensus 72 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~ 122 (126)
T 3upv_A 72 VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKAS 122 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHH
Confidence 455666666666666666666666666666654444344444555554444
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.29 E-value=6.6e-12 Score=121.90 Aligned_cols=208 Identities=12% Similarity=0.011 Sum_probs=159.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHH-------HHHHHHhCCHHHHHHHHHHHHHHHHHcCChh
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQL-------GNAYFYLGDYQKAMQYHKQDLTLARNMEDKL 97 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~l-------g~~~~~~g~~~~A~~~~~~al~~~~~~~d~~ 97 (609)
++-.|.-+ ..+++..|...|.++++.+|+.. .+|..+ +.++...+.+.+++..+.+++.+....-...
T Consensus 10 ~~~~~~~~-~~~d~~~A~~~F~~a~~~dP~~~----Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~ 84 (282)
T 4f3v_A 10 LFESAVSM-LPMSEARSLDLFTEITNYDESAC----DAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNAR 84 (282)
T ss_dssp HHHHHHHH-TTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCE
T ss_pred HHHHHhcc-cCCCHHHHHHHHHHHHHhChhhh----HHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhh
Confidence 33345554 68999999999999999999874 488888 8889898889999999999888643221100
Q ss_pred ---------------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCC
Q psy10738 98 ---------------GEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162 (609)
Q Consensus 98 ---------------~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~ 162 (609)
....+...++.++...|+|++|.+.|...+...+ ... +.+.+|.+++..++
T Consensus 85 ~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p------~~~-~~~~~a~l~~~~~r------- 150 (282)
T 4f3v_A 85 IAIGGLYGDITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS------EHL-VAWMKAVVYGAAER------- 150 (282)
T ss_dssp EECCTTTCCCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC------HHH-HHHHHHHHHHHTTC-------
T ss_pred hccCCcccccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC------chH-HHHHHHHHHHHcCC-------
Confidence 1134556678899999999999999987665222 444 88999999999999
Q ss_pred CCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRA 242 (609)
Q Consensus 163 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 242 (609)
|++|+.+++++... .++.....+++++|.++..+|++++|+.+|++++.- ..++.....+
T Consensus 151 -------------~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g---~~~P~~~~da 210 (282)
T 4f3v_A 151 -------------WTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDS---PAGEACARAI 210 (282)
T ss_dssp -------------HHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---TTTTTTHHHH
T ss_pred -------------HHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC---CCCccccHHH
Confidence 99999999866443 233333568899999999999999999999998731 1102224458
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 243 NSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 243 ~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
.+++|.++..+|+.++|...|++++...+
T Consensus 211 ~~~~glaL~~lGr~deA~~~l~~a~a~~P 239 (282)
T 4f3v_A 211 AWYLAMARRSQGNESAAVALLEWLQTTHP 239 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 88999999999999999999999888654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.8e-11 Score=105.51 Aligned_cols=138 Identities=19% Similarity=0.220 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+..+..+|.+++..|++++|+.++++++.. .+....++..+|.++...|++++|+.++.+++.+.+ .
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~------~ 79 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK------K 79 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------c
Confidence 4556777777777777777777777777776 455567777777777777777777777777777654 3
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQ 218 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~ 218 (609)
...+++.+|.++...|+ +++|+.++++++.+.+. ......+..++..+...|++++
T Consensus 80 ~~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~a~~~~p~----~~~~~~~~~~~~~~~~~~~~~~ 135 (166)
T 1a17_A 80 YIKGYYRRAASNMALGK--------------------FRAALRDYETVVKVKPH----DKDAKMKYQECNKIVKQKAFER 135 (166)
T ss_dssp CHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHSTT----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777777777777 77777777777765221 1122233444555666777777
Q ss_pred HHHHHHHHHHHHHH
Q psy10738 219 AIYYHQERLKIARE 232 (609)
Q Consensus 219 A~~~~~~al~~~~~ 232 (609)
|+.++.++..+...
T Consensus 136 A~~~~~~~~~~~~~ 149 (166)
T 1a17_A 136 AIAGDEHKRSVVDS 149 (166)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHcccchHHHhcc
Confidence 77777776666554
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=1.7e-10 Score=122.22 Aligned_cols=149 Identities=13% Similarity=0.087 Sum_probs=133.4
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSE 139 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~ 139 (609)
...+..+..+|+|++|+.++++++++..+. .+.+..+.++.+||.+|..+|+|++|+.++++++++.... .+++..
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~ 392 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQL 392 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence 344556778999999999999999998765 4678899999999999999999999999999999998876 466789
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
+..+++||.+|..+|+ |++|+.+|++|+++.... .+++....+..+++.++..++.++
T Consensus 393 a~~l~nLa~~~~~~G~--------------------~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 393 GMAVMRAGLTNWHAGH--------------------IEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999 999999999999999887 577888999999999999999999
Q ss_pred HHHHHHHHHHHHHHH
Q psy10738 218 QAIYYHQERLKIARE 232 (609)
Q Consensus 218 ~A~~~~~~al~~~~~ 232 (609)
+|...|.++.+.+.+
T Consensus 453 ~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 453 QNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhc
Confidence 999999998776533
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.2e-11 Score=118.20 Aligned_cols=208 Identities=10% Similarity=-0.051 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL-------GNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l-------g~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
-++..|.-+ ..+++..|...|.+++.+ .|..+.+|..+ +.++...+++.+++..+.+++.+.+..-
T Consensus 9 ~~~~~~~~~-~~~d~~~A~~~F~~a~~~------dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l 81 (282)
T 4f3v_A 9 SLFESAVSM-LPMSEARSLDLFTEITNY------DESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTL 81 (282)
T ss_dssp HHHHHHHHH-TTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGG
T ss_pred HHHHHHhcc-cCCCHHHHHHHHHHHHHh------ChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhh
Confidence 345555555 589999999999999999 99999999999 8999999999999999999998766432
Q ss_pred CcH---------------HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 135 DKL---------------SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199 (609)
Q Consensus 135 d~~---------------~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 199 (609)
... ....+...++.++...|+ |++|.+.|...+.. .+..
T Consensus 82 ~a~~~~~g~y~~~~~~v~~r~dl~LayA~~L~~~g~--------------------y~eA~~~l~~~~~~------~p~~ 135 (282)
T 4f3v_A 82 NARIAIGGLYGDITYPVTSPLAITMGFAACEAAQGN--------------------YADAMEALEAAPVA------GSEH 135 (282)
T ss_dssp CCEEECCTTTCCCEEECSSHHHHHHHHHHHHHHHTC--------------------HHHHHHHHTSSCCT------TCHH
T ss_pred hhhhccCCcccccccccCCHhHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHhc------CCch
Confidence 211 124456667788888888 88888877765542 2333
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
. +.+.+|.+++..|+|++|+.+++++... .++.....+++++|.++..+|++++|+.+|++++.-. .++...
T Consensus 136 ~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~----~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~---~~P~~~ 207 (282)
T 4f3v_A 136 L-VAWMKAVVYGAAERWTDVIDQVKSAGKW----PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSP---AGEACA 207 (282)
T ss_dssp H-HHHHHHHHHHHTTCHHHHHHHHTTGGGC----SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTST---TTTTTH
T ss_pred H-HHHHHHHHHHHcCCHHHHHHHHHHhhcc----CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCC---CCcccc
Confidence 3 7777888888888888888888755332 1222233466777777777777777777777665210 002113
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIA 310 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 310 (609)
..+.+.+|.++..+|+.++|...|++++...
T Consensus 208 ~da~~~~glaL~~lGr~deA~~~l~~a~a~~ 238 (282)
T 4f3v_A 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTH 238 (282)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 4456666666666666666666666666543
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.27 E-value=2.1e-10 Score=121.49 Aligned_cols=147 Identities=16% Similarity=0.115 Sum_probs=131.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
...+..+..+|+|++|+..+++++++.... .+.+..+.++.+||.+|..+|+ |++|+.
T Consensus 313 le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------------~~eA~~ 372 (490)
T 3n71_A 313 LEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQA--------------------YEEASH 372 (490)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcC--------------------HHHHHH
Confidence 344556778999999999999999998765 3566889999999999999999 999999
Q ss_pred HHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 182 YYEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF--GDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 182 ~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
++++++++.+.. .+++..+..+++||.+|..+|++++|+.+|++|+++.... .+.+..+....+++.++..++.++
T Consensus 373 ~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~ 452 (490)
T 3n71_A 373 YARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFR 452 (490)
T ss_dssp HHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887 6778999999999999999999999999999999999884 456777888899999999999999
Q ss_pred HHHHHHHHHHHHH
Q psy10738 258 AASEHYKRTLVLA 270 (609)
Q Consensus 258 ~A~~~~~~al~~~ 270 (609)
+|...|.++.+.+
T Consensus 453 ~ae~~~~~~~~~~ 465 (490)
T 3n71_A 453 QNEFMYHKMREAA 465 (490)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999987655
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.27 E-value=1.4e-10 Score=99.30 Aligned_cols=128 Identities=35% Similarity=0.609 Sum_probs=113.6
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
...|..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+....++..
T Consensus 5 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~ 74 (136)
T 2fo7_A 5 YNLGNAYYKQGDYDEAIEYYQKALELDPRSA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPRSAEAWYN 74 (136)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHcCCcch----hHHHHHHHHHHHhcCHHHHHHHHHHHHHH------CCCchHHHHH
Confidence 4458899999999999999999999988764 47888999999999999999999999987 5556778999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.++...|++++|+.++++++...+ ....++..+|.++...|+ +++|..++++
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~ 128 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDP------RSAEAWYNLGNAYYKQGD--------------------YDEAIEYYQK 128 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTC--------------------HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCC------CChHHHHHHHHHHHHHcc--------------------HHHHHHHHHH
Confidence 99999999999999999999998754 335678899999999999 9999999999
Q ss_pred HHHH
Q psy10738 186 NLAL 189 (609)
Q Consensus 186 al~~ 189 (609)
++..
T Consensus 129 ~~~~ 132 (136)
T 2fo7_A 129 ALEL 132 (136)
T ss_dssp HHHH
T ss_pred HHcc
Confidence 8875
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.24 E-value=2.2e-11 Score=107.81 Aligned_cols=114 Identities=18% Similarity=0.137 Sum_probs=83.4
Q ss_pred HHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHH
Q psy10738 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121 (609)
Q Consensus 42 ~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~ 121 (609)
-..|++++..+|++ ..+++.+|.+++..|++++|+..|++++.. .+....+++.+|.++...|++++|+.
T Consensus 7 ~~~~~~al~~~p~~----~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~ 76 (148)
T 2vgx_A 7 GGTIAMLNEISSDT----LEQLYSLAFNQYQSGXYEDAHXVFQALCVL------DHYDSRFFLGLGACRQAMGQYDLAIH 76 (148)
T ss_dssp CCSHHHHTTCCHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhhHHHHHcCCHhh----HHHHHHHHHHHHHcCChHHHHHHHHHHHHc------CcccHHHHHHHHHHHHHHhhHHHHHH
Confidence 34566677766655 336677777888888888888888877777 66667777778888888888888888
Q ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 122 ~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
+|++++.+.+ ....+++++|.+|...|+ +++|+.+|++++++.+
T Consensus 77 ~~~~al~l~p------~~~~~~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p 120 (148)
T 2vgx_A 77 SYSYGAVMDI------XEPRFPFHAAECLLQXGE--------------------LAEAESGLFLAQELIA 120 (148)
T ss_dssp HHHHHHHHST------TCTHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCC------CCchHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHCc
Confidence 8887777765 334567777888888887 7888888877777654
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.24 E-value=2.6e-10 Score=100.32 Aligned_cols=114 Identities=18% Similarity=0.110 Sum_probs=97.9
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-------chh-HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTD-------DLR-TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN 92 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-------~~~-~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 92 (609)
.+..+...|..++..|+|++|+..|++|+++.|+ +.. ..+.+|.++|.++..+|+|++|+.++.++++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 4567778899999999999999999999999998 321 23459999999999999999999999999998443
Q ss_pred -cCChhhHHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 93 -MEDKLGEAKSS----GNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 93 -~~d~~~~~~a~----~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
..-.|..+.+| +++|.++..+|++++|+.+|++++++.+...
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~ 136 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERK 136 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcH
Confidence 23345677788 9999999999999999999999999998653
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-10 Score=102.00 Aligned_cols=117 Identities=11% Similarity=0.071 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG------DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
.+..+.++|..+...|+|++|+..|++++++.+... .....+.+|.++|.++..+|+|++|+..+.++++++..
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~ 89 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR 89 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence 466788999999999999999999999999988732 12234559999999999999999999999999998322
Q ss_pred cC-CcHHHHHHH----HHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc
Q psy10738 273 LG-DRAVEAQAC----YSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD 315 (609)
Q Consensus 273 ~~-~~~~~~~~~----~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 315 (609)
.. -.+..+.+| +++|.++..+|++++|+..|++++++.++-..
T Consensus 90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 21 111246677 99999999999999999999999999887543
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.23 E-value=8.7e-12 Score=116.17 Aligned_cols=160 Identities=15% Similarity=0.018 Sum_probs=114.3
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH-----
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL----- 137 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~----- 137 (609)
....+......|.+++|.+.+...... ....+..+..+|..+...|++++|+.+|.+++.+.+...+..
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 80 (198)
T 2fbn_A 7 HHHHSSGRENLYFQGAKKSIYDYTDEE------KVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL 80 (198)
T ss_dssp ---------------CCCSGGGCCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH
T ss_pred ccchhhhhhhhhhccccCchhhCCHHH------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH
Confidence 344566677788888888887766555 566788899999999999999999999999998766433211
Q ss_pred -----HHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 138 -----SEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL 212 (609)
Q Consensus 138 -----~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 212 (609)
....++.++|.+|...|+ +++|+.++++++.+ .+....+++++|.+|..
T Consensus 81 ~~~~~~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~ 134 (198)
T 2fbn_A 81 DKKKNIEISCNLNLATCYNKNKD--------------------YPKAIDHASKVLKI------DKNNVKALYKLGVANMY 134 (198)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHh------CcccHHHHHHHHHHHHH
Confidence 124788899999999999 99999999999887 33446788999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
+|++++|+.+|++++.+.+... .++..++.++...++..++.
T Consensus 135 ~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 135 FGFLEEAKENLYKAASLNPNNL------DIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HTCHHHHHHHHHHHHHHSTTCH------HHHHHHHHHHHHHHHHHC--
T ss_pred cccHHHHHHHHHHHHHHCCCcH------HHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988765432 37778888888887777665
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.21 E-value=9.9e-12 Score=115.81 Aligned_cols=161 Identities=16% Similarity=0.127 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
.....+......|.+++|.+.+........ ..+..+..+|.++...|+ |++|+.
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~g~~~~~~~~--------------------~~~A~~ 59 (198)
T 2fbn_A 6 HHHHHSSGRENLYFQGAKKSIYDYTDEEKV------QSAFDIKEEGNEFFKKNE--------------------INEAIV 59 (198)
T ss_dssp ----------------CCCSGGGCCHHHHH------HHHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred cccchhhhhhhhhhccccCchhhCCHHHHH------HHHHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 344566777788888888888876554433 667889999999999999 999999
Q ss_pred HHHHHHHHHHHhCCh----------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy10738 182 YYEQNLALMKEINDT----------AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251 (609)
Q Consensus 182 ~~~~al~~~~~~~~~----------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 251 (609)
+|.+++.+.+...+. .....++.++|.+|...|++++|+.++++++.+.+.. ..+++.+|.+|.
T Consensus 60 ~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~ 133 (198)
T 2fbn_A 60 KYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN------VKALYKLGVANM 133 (198)
T ss_dssp HHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHH
Confidence 999999875433211 1124677888888888888888888888888774432 237778888888
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAI 300 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 300 (609)
.+|++++|+.+|++++.+.+.. ..++..++.++...++..++.
T Consensus 134 ~~~~~~~A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 134 YFGFLEEAKENLYKAASLNPNN------LDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp HHTCHHHHHHHHHHHHHHSTTC------HHHHHHHHHHHHHHHHHHC--
T ss_pred HcccHHHHHHHHHHHHHHCCCc------HHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888776543 556777777777777666665
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.20 E-value=1.7e-11 Score=130.13 Aligned_cols=152 Identities=18% Similarity=0.156 Sum_probs=117.5
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC---------cHHHHHH
Q psy10738 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND---------KLSEGRA 142 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d---------~~~~~~~ 142 (609)
.++++++|+..+..++.. .+..+.++..+|.++...|+|++|+.+|.+++.+.+.... ......+
T Consensus 246 ~l~~~~~A~~~~~~~~~~------~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~ 319 (457)
T 1kt0_A 246 TLKSFEKAKESWEMDTKE------KLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAA 319 (457)
T ss_dssp EEEEEECCCCGGGSCHHH------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHH
T ss_pred hhhhcccCcchhhcCHHH------HHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHH
Confidence 345677888888887777 6778899999999999999999999999999998875421 1233677
Q ss_pred HHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 143 LYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222 (609)
Q Consensus 143 ~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 222 (609)
++++|.+|..+|+ |++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+
T Consensus 320 ~~nla~~~~~~g~--------------------~~~A~~~~~~al~~------~p~~~~a~~~~g~a~~~~g~~~~A~~~ 373 (457)
T 1kt0_A 320 FLNLAMCYLKLRE--------------------YTKAVECCDKALGL------DSANEKGLYRRGEAQLLMNEFESAKGD 373 (457)
T ss_dssp HHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcC--------------------HHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHccCHHHHHHH
Confidence 8888888888888 88888888888877 334466788888888888888888888
Q ss_pred HHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHH
Q psy10738 223 HQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASE 261 (609)
Q Consensus 223 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 261 (609)
|++++++.+.... ++.+++.++...+++++|..
T Consensus 374 ~~~al~l~P~~~~------a~~~l~~~~~~~~~~~~a~~ 406 (457)
T 1kt0_A 374 FEKVLEVNPQNKA------ARLQISMCQKKAKEHNERDR 406 (457)
T ss_dssp HHHHHTTC----C------HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHH------HHHHHHHHHHHHHHHHHHHH
Confidence 8888887766655 77788888888887776654
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=6.3e-11 Score=117.06 Aligned_cols=193 Identities=14% Similarity=0.114 Sum_probs=138.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..++..|++++|+..|++++...|.+. .++..+|.+|...|++++|+..+++++.+ .+....++
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~ 75 (281)
T 2c2l_A 6 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKAH 75 (281)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHH
Confidence 456679999999999999999999999999874 48899999999999999999999999988 77788999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
+++|.+|...|++++|+.+|++++.+.+....... ........ ..++..+.
T Consensus 76 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~------~~~~~~~~-----------------------~~~~~~~~ 126 (281)
T 2c2l_A 76 FFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG------DDIPSALR-----------------------IAKKKRWN 126 (281)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC------SHHHHHHH-----------------------HHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH------HHHHHHHH-----------------------HHHHHHHH
Confidence 99999999999999999999999999886532211 01111111 11111111
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh-CCHHHHHHH
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL-GEYQAASEH 262 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~-g~~~~A~~~ 262 (609)
.... ....... .+...++.++ .|++++|++.++++++..+... .....++.++... +.+++|...
T Consensus 127 ~~~~---~~~~~~~---~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~------~~~~~l~~~~~~~~~~~~~a~~~ 192 (281)
T 2c2l_A 127 SIEE---RRIHQES---ELHSYLTRLI--AAERERELEECQRNHEGHEDDG------HIRAQQACIEAKHDKYMADMDEL 192 (281)
T ss_dssp HHHH---TCCCCCC---HHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHH------HHTHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHH---HHHhhhH---HHHHHHHHHH--HHHHHHHHHHHHhhhccccchh------hhhhHHHHHHHHHHHHHHHHHHH
Confidence 1111 0111112 1233334433 6899999999999998854221 2444455555555 889999999
Q ss_pred HHHHHHH
Q psy10738 263 YKRTLVL 269 (609)
Q Consensus 263 ~~~al~~ 269 (609)
|.++.+.
T Consensus 193 f~~a~~~ 199 (281)
T 2c2l_A 193 FSQVDEK 199 (281)
T ss_dssp HHHSSCT
T ss_pred HHhhhcc
Confidence 9988864
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=99.20 E-value=2.4e-11 Score=107.64 Aligned_cols=114 Identities=13% Similarity=0.074 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCC
Q psy10738 82 YHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161 (609)
Q Consensus 82 ~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~ 161 (609)
.+++++.+ .+....+++.+|.++...|++++|+.+|++++.+.+ ....+++++|.+|...|+
T Consensus 9 ~~~~al~~------~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~lg~~~~~~g~------ 70 (148)
T 2vgx_A 9 TIAMLNEI------SSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDH------YDSRFFLGLGACRQAMGQ------ 70 (148)
T ss_dssp SHHHHTTC------CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC------
T ss_pred hHHHHHcC------CHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCc------ccHHHHHHHHHHHHHHhh------
Confidence 45555555 677778888888888888888888888888887765 446677888888888888
Q ss_pred CCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh
Q psy10738 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233 (609)
Q Consensus 162 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 233 (609)
+++|+.+|++++.+ .+....+++++|.+|..+|++++|+.+|++++++.+..
T Consensus 71 --------------~~~A~~~~~~al~l------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 122 (148)
T 2vgx_A 71 --------------YDLAIHSYSYGAVM------DIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANX 122 (148)
T ss_dssp --------------HHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTC
T ss_pred --------------HHHHHHHHHHHHhc------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 88888888888877 33345678888888888888888888888888877653
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.19 E-value=2.6e-10 Score=97.75 Aligned_cols=119 Identities=20% Similarity=0.268 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
....+...|..++..|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~ 84 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA----KLYSNRAACYTKLLEFQLALKDCEECIQL------EPTFI 84 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH----HHHHHHHHHHTTTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH----HHHHHHHHHHHHhccHHHHHHHHHHHHHh------CCCch
Confidence 345666779999999999999999999999999874 48899999999999999999999999998 66678
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
.++..+|.++...|++++|+.++++++.+.+ ....++..++.++...|+
T Consensus 85 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 85 KGYTRKAAALEAMKDYTKAMDVYQKALDLDS------SCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCG------GGTHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC------CchHHHHHHHHHHHHhcC
Confidence 8999999999999999999999999998866 345678888988887764
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.8e-10 Score=102.35 Aligned_cols=104 Identities=16% Similarity=0.154 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..++..|+|++|+.+|+++++..|.+. .+++.+|.+|...|++++|+.++++++.+ .+....
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~~~~~l~~~~~~~g~~~~A~~~~~~al~~------~p~~~~ 80 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP----IYLSNRAAAYSASGQHEKAAEDAELATVV------DPKYSK 80 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHH
Confidence 44566789999999999999999999999999874 48999999999999999999999999999 777899
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND 135 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d 135 (609)
+++++|.+|..+|++++|+.+|++++++.+....
T Consensus 81 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 81 AWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 9999999999999999999999999999875443
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=99.18 E-value=2.4e-10 Score=102.80 Aligned_cols=108 Identities=19% Similarity=0.203 Sum_probs=75.3
Q ss_pred hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHh
Q psy10738 96 KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 96 ~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 175 (609)
.+..+.+++.+|.++...|++++|+.+|++++.+.+ ....+++++|.+|...|+
T Consensus 7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~g~-------------------- 60 (164)
T 3sz7_A 7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP------ANPIYLSNRAAAYSASGQ-------------------- 60 (164)
T ss_dssp CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTC--------------------
T ss_pred hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------cCHHHHHHHHHHHHHccC--------------------
Confidence 445566777777777777777777777777777655 335567777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 235 (609)
+++|+.+|++++.+ .+....++.++|.+|..+|++++|+.+|++++++.+....
T Consensus 61 ~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 61 HEKAAEDAELATVV------DPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 77777777777766 2334566777777777777777777777777777666554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.17 E-value=1e-10 Score=106.56 Aligned_cols=126 Identities=17% Similarity=0.252 Sum_probs=108.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH-
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT- 109 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~- 109 (609)
.+...|++++|+..|+++++..|.+. .++..+|.+|...|++++|+.++++++.+ .+....++..+|.+
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~la~~l 88 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRANPQNS----EQWALLGEYYLWQNDYSNSLLAYRQALQL------RGENAELYAALATVL 88 (177)
T ss_dssp CCC-----CCCCHHHHHHHHHCCSCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------HCSCHHHHHHHHHHH
T ss_pred hhhhccCHHHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHH
Confidence 34567899999999999999999875 48899999999999999999999999998 56668899999999
Q ss_pred HHHcCCH--HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 110 LKVMGKY--DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 110 ~~~~g~~--~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
+...|++ ++|+.++++++.+.+ ....+++.+|.+|...|+ +++|+.++++++
T Consensus 89 ~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~--------------------~~~A~~~~~~al 142 (177)
T 2e2e_A 89 YYQASQHMTAQTRAMIDKALALDS------NEITALMLLASDAFMQAN--------------------YAQAIELWQKVM 142 (177)
T ss_dssp HHHTTTCCCHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHH
T ss_pred HHhcCCcchHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHccc--------------------HHHHHHHHHHHH
Confidence 8899999 999999999998865 445789999999999999 999999999999
Q ss_pred HHHHH
Q psy10738 188 ALMKE 192 (609)
Q Consensus 188 ~~~~~ 192 (609)
.+.+.
T Consensus 143 ~~~p~ 147 (177)
T 2e2e_A 143 DLNSP 147 (177)
T ss_dssp HTCCT
T ss_pred hhCCC
Confidence 87443
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2.1e-11 Score=129.38 Aligned_cols=152 Identities=14% Similarity=0.162 Sum_probs=122.2
Q ss_pred cCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------ChhhHHHHHHH
Q psy10738 35 AGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---------DKLGEAKSSGN 105 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------d~~~~~~a~~~ 105 (609)
.+++++|+..|+.++...|.. +..+..+|.+++..|+|++|+.+|++++.+..... ..+....++.+
T Consensus 247 l~~~~~A~~~~~~~~~~~~~~----a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~n 322 (457)
T 1kt0_A 247 LKSFEKAKESWEMDTKEKLEQ----AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLN 322 (457)
T ss_dssp EEEEECCCCGGGSCHHHHHHH----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCcchhhcCHHHHHHH----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHH
Confidence 345566777776666655543 56888999999999999999999999998844321 12233789999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.+|..+|++++|+.+|++++.+.+ ....+++++|.+|..+|+ +++|+.+|++
T Consensus 323 la~~~~~~g~~~~A~~~~~~al~~~p------~~~~a~~~~g~a~~~~g~--------------------~~~A~~~~~~ 376 (457)
T 1kt0_A 323 LAMCYLKLREYTKAVECCDKALGLDS------ANEKGLYRRGEAQLLMNE--------------------FESAKGDFEK 376 (457)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcCC------ccHHHHHHHHHHHHHccC--------------------HHHHHHHHHH
Confidence 99999999999999999999999876 457799999999999999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 222 (609)
++++ .+....++.+++.++..+|++++|...
T Consensus 377 al~l------~P~~~~a~~~l~~~~~~~~~~~~a~~~ 407 (457)
T 1kt0_A 377 VLEV------NPQNKAARLQISMCQKKAKEHNERDRR 407 (457)
T ss_dssp HHTT------C----CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHh------CCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9987 445557899999999999999887653
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.16 E-value=7.2e-11 Score=103.56 Aligned_cols=82 Identities=17% Similarity=0.188 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.++.+|.+++..|++++|+.+|++++.. .|....++..+|.++...|++++|+.+|++++.+.+ ....
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~ 87 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCML------DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDI------NEPR 87 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCTH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHh------CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------CCcH
Confidence 4445555555555555555555555554 444445555555555555555555555555555443 2223
Q ss_pred HHHHHHHHHHHccc
Q psy10738 142 ALYNLGNVYHAKGK 155 (609)
Q Consensus 142 ~~~~lg~~~~~~g~ 155 (609)
+++++|.+|...|+
T Consensus 88 ~~~~lg~~~~~~g~ 101 (142)
T 2xcb_A 88 FPFHAAECHLQLGD 101 (142)
T ss_dssp HHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHcCC
Confidence 44555555555555
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.15 E-value=1e-09 Score=93.31 Aligned_cols=119 Identities=24% Similarity=0.295 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
....+...|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+.++++++.. .+...
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~ 80 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA----VYFCNRAAAYSKLGNYAGAVQDCERAICI------DPAYS 80 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH----HHHHHHHHHHHHhhchHHHHHHHHHHHhc------CccCH
Confidence 345566779999999999999999999999998874 48899999999999999999999999998 56668
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
.++..+|.++...|++++|+.++++++.+.+ ....++..+|.++...|+
T Consensus 81 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p------~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 81 KAYGRMGLALSSLNKHVEAVAYYKKALELDP------DNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCc------cchHHHHHHHHHHHHHhc
Confidence 8999999999999999999999999998865 345688899999998887
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=99.14 E-value=7.2e-10 Score=97.08 Aligned_cols=101 Identities=20% Similarity=0.167 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.++..|..++..|++++|+..|++++..+|.++. +++.+|.++...|++++|+.+|++++.+ .+....+
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~ 88 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR----YFLGLGACRQSLGLYEQALQSYSYGALM------DINEPRF 88 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCTHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH----HHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCcHH
Confidence 44566799999999999999999999999998854 8899999999999999999999999999 7778889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~ 133 (609)
++++|.+|...|++++|+.+|++++.+.+..
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~ 119 (142)
T 2xcb_A 89 PFHAAECHLQLGDLDGAESGFYSARALAAAQ 119 (142)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999998843
|
| >2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* 3onw_C* 3qi2_C* | Back alignment and structure |
|---|
Probab=99.14 E-value=1.4e-11 Score=75.02 Aligned_cols=26 Identities=42% Similarity=0.466 Sum_probs=23.8
Q ss_pred cchHHHHHhhhccCCCcccccCcccc
Q psy10738 443 EESFFELLSRFQSERMDDQRCSLSAR 468 (609)
Q Consensus 443 ~~~f~~ll~~~q~~rmddqr~~~~~~ 468 (609)
.|+|||||+|+||+|||||||.+...
T Consensus 2 ~e~ffdLLSR~Qs~R~dDQR~~l~~~ 27 (36)
T 2om2_B 2 IEGLVELLNRVQSSGAHDQRGLLRKE 27 (36)
T ss_dssp CHHHHHHHHHHHTCSCCSCSSSCCTT
T ss_pred chHHHHHHHHhccCcccccccccccc
Confidence 58999999999999999999999753
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=99.14 E-value=2.2e-11 Score=120.33 Aligned_cols=194 Identities=15% Similarity=0.032 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
+.++..+|..+...|++++|+.+|.+++.+.+ ....+++++|.+|...|+ +++|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A 57 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQ--------------------PEQA 57 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTC--------------------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcC--------------------HHHH
Confidence 34455555555555555555555555555433 233455555555555555 5555
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
+..+++++++ .+....+++++|.+|..+|++++|+.+|++++.+.+....... ........ ..++
T Consensus 58 ~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~------~~~~~~~~---~~~~ 122 (281)
T 2c2l_A 58 LADCRRALEL------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFG------DDIPSALR---IAKK 122 (281)
T ss_dssp HHHHHHHTTS------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCC------SHHHHHHH---HHHH
T ss_pred HHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhhHH------HHHHHHHH---HHHH
Confidence 5555555544 2223445556666666666666666666666665554322100 00000000 0011
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc-CChHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR-GNHEK 338 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~-g~~~~ 338 (609)
..+...... ..... ..+...++.++ .|++++|++.++++++..+.... ....++.++... +.+++
T Consensus 123 ~~~~~~~~~---~~~~~---~~i~~~l~~l~--~~~~~~A~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~~~~~ 188 (281)
T 2c2l_A 123 KRWNSIEER---RIHQE---SELHSYLTRLI--AAERERELEECQRNHEGHEDDGH------IRAQQACIEAKHDKYMAD 188 (281)
T ss_dssp HHHHHHHHT---CCCCC---CHHHHHHHHHH--HHHHHHHHTTTSGGGTTTSCHHH------HTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---HHhhh---HHHHHHHHHHH--HHHHHHHHHHHHhhhccccchhh------hhhHHHHHHHHHHHHHHH
Confidence 111110000 00110 11222233332 56777777777776665544322 222334444443 77778
Q ss_pred HHHHHHHHHH
Q psy10738 339 ALYFATKHLE 348 (609)
Q Consensus 339 A~~~~~~al~ 348 (609)
|...|.++.+
T Consensus 189 a~~~f~~a~~ 198 (281)
T 2c2l_A 189 MDELFSQVDE 198 (281)
T ss_dssp HHHHHHHSSC
T ss_pred HHHHHHhhhc
Confidence 8888888886
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.14 E-value=4e-10 Score=101.09 Aligned_cols=105 Identities=21% Similarity=0.177 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED------------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d------------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 126 (609)
.+..+..+|..++..|+|++|+.+|.+++.+...... .+....++.++|.+|..+|++++|+.++.++
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 3556777777777777777777777777776543311 3444566666666666666666666666666
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 127 LEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 127 l~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+.+.+ ....+++.+|.+|...|+ +++|+..|++++.+
T Consensus 90 l~~~p------~~~~a~~~~g~~~~~~g~--------------------~~~A~~~~~~al~l 126 (162)
T 3rkv_A 90 LKREE------TNEKALFRRAKARIAAWK--------------------LDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHST------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HhcCC------cchHHHHHHHHHHHHHhc--------------------HHHHHHHHHHHHhc
Confidence 66644 344566666666666666 66666666666665
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=99.14 E-value=1e-09 Score=98.29 Aligned_cols=123 Identities=16% Similarity=0.161 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHh--------CCcc------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQA--------GTDD------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDL 87 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~--------~~~~------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 87 (609)
+..+...|..++..|+|++|+..|.+++.. .|.+ ......++.++|.+|..+|++++|+.++.+++
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 445667799999999999999999999998 3332 22346789999999999999999999999999
Q ss_pred HHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 88 TLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 88 ~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
.+ .+..+.+++.+|.+|..+|++++|+.+|++++.+.+.. ...+...++.+....++
T Consensus 91 ~~------~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~-----~~~~~~~l~~~~~~~~~ 147 (162)
T 3rkv_A 91 KR------EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAA-----ASVVAREMKIVTERRAE 147 (162)
T ss_dssp HH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGG-----HHHHHHHHHHHHHHHHH
T ss_pred hc------CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCC-----HHHHHHHHHHHHHHHHH
Confidence 99 78889999999999999999999999999999997621 11345555555555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.12 E-value=7.2e-10 Score=94.35 Aligned_cols=118 Identities=20% Similarity=0.272 Sum_probs=67.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++.+++...+ ..
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~ 79 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIEL------NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDP------AY 79 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCc------cC
Confidence 445566666666666666666666666655 344455566666666666666666666666665433 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
..++..+|.++...|+ +++|+.++++++.+. +....++..+|.++...|+
T Consensus 80 ~~~~~~~~~~~~~~~~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 80 SKAYGRMGLALSSLNK--------------------HVEAVAYYKKALELD------PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHS------TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhcC------ccchHHHHHHHHHHHHHhc
Confidence 3455666666666666 666666666655541 1223355555555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.11 E-value=4.6e-10 Score=95.48 Aligned_cols=98 Identities=14% Similarity=0.046 Sum_probs=88.5
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
.+..|..+...|++++|+..|+++++.+|++.. +++.+|.++...|++++|+..+++++++ .|....++.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~ 89 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREE----AWRSLGLTQAENEKDGLAIIALNHARML------DPKDIAVHA 89 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHH
Confidence 456799999999999999999999999998854 8899999999999999999999999999 788889999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
.+|.++...|++++|+.++++++++.+.
T Consensus 90 ~la~~~~~~g~~~~A~~~~~~al~~~P~ 117 (121)
T 1hxi_A 90 ALAVSHTNEHNANAALASLRAWLLSQPQ 117 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCcC
Confidence 9999999999999999999999987763
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.11 E-value=1.6e-09 Score=93.62 Aligned_cols=100 Identities=22% Similarity=0.271 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...|..++..|++++|+.+|++++...|.+. .++..+|.++...|++++|+.++++++.+ .+....+
T Consensus 10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 79 (137)
T 3q49_B 10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKA 79 (137)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CchhHHH
Confidence 4556679999999999999999999999999874 48999999999999999999999999998 6778899
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
++.+|.++...|++++|+.+|++++.+.+.
T Consensus 80 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 80 HFFLGQCQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHChh
Confidence 999999999999999999999999999986
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.10 E-value=4.6e-10 Score=96.18 Aligned_cols=117 Identities=16% Similarity=0.206 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...+..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+ ..
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~------~~ 83 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKR------NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEP------TF 83 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC------Cc
Confidence 456666677777777777777777766665 444456666666666666666666666666666543 23
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG 214 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g 214 (609)
..++..+|.++...|+ +++|+.++++++.+. +....++..++.++...|
T Consensus 84 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 84 IKGYTRKAAALEAMKD--------------------YTKAMDVYQKALDLD------SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHC------GGGTHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHhC------CCchHHHHHHHHHHHHhc
Confidence 4466666666666666 666666666666552 222345556666665544
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=3.2e-10 Score=113.65 Aligned_cols=236 Identities=7% Similarity=-0.044 Sum_probs=175.7
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTL 110 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~ 110 (609)
....+..++|+.++.++|..+|++.. +++..+.+...+| .+++++.++..++.. .+....++...+.++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~nP~~yt----aWn~R~~iL~~l~~~l~eEL~~~~~~L~~------nPKny~aW~hR~wlL 133 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMNPAHYT----VWQYRFSLLTSLNKSLEDELRLMNEFAVQ------NLKSYQVWHHRLLLL 133 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHT------TCCCHHHHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHhCchhHH----HHHHHHHHHHHhhhhHHHHHHHHHHHHHh------CCCcHHHHHHHHHHH
Confidence 34445567899999999999999854 8999999999999 599999999999988 888899999999999
Q ss_pred HHc-C-CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 111 KVM-G-KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 111 ~~~-g-~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
... + ++++++.++.++++..+ ....++...+.+....|.+. ......+.++++++.++++
T Consensus 134 ~~l~~~~~~~EL~~~~k~L~~dp------kNy~AW~~R~wvl~~l~~~~------------~~~~~~~~eELe~~~k~I~ 195 (349)
T 3q7a_A 134 DRISPQDPVSEIEYIHGSLLPDP------KNYHTWAYLHWLYSHFSTLG------------RISEAQWGSELDWCNEMLR 195 (349)
T ss_dssp HHHCCSCCHHHHHHHHHHTSSCT------TCHHHHHHHHHHHHHHHHTT------------CCCHHHHHHHHHHHHHHHH
T ss_pred HHhcCCChHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcccc------------ccchhhHHHHHHHHHHHHH
Confidence 998 8 89999999999987655 55678889999998888710 0011223489999999888
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHH---
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGN-------FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA--- 258 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~--- 258 (609)
. .+....++++.+.+...++. ++++++++.+++.+.+.... +++.+..++...|....
T Consensus 196 ~------dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~S------aW~Ylr~Ll~~~~~~~~~~~ 263 (349)
T 3q7a_A 196 V------DGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVS------AWNYLRGFLKHFSLPLVPIL 263 (349)
T ss_dssp H------CTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCCSGGGH
T ss_pred h------CCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhcCCCccccc
Confidence 6 45556799999999999887 78999999999988765544 77777778777765400
Q ss_pred -------------H-HHHHHHHHHHHHHc---CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 259 -------------A-SEHYKRTLVLAQDL---GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 259 -------------A-~~~~~~al~~~~~~---~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
. ......++++.... +.......++..++.+|...|+.++|++.++...
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~ 329 (349)
T 3q7a_A 264 PAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLS 329 (349)
T ss_dssp HHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 0 01111111111111 0112345678888999999999988888887753
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.09 E-value=2.2e-09 Score=90.43 Aligned_cols=116 Identities=31% Similarity=0.523 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...|..+...|++++|+.+|++++...|.+. .++..+|.++...|++++|+.++++++.. .+....+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~la~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~ 79 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEA 79 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH----HHHHHHHHHHHHhCCHHHHHHHHHHHHHh------CCccHHH
Confidence 3455678999999999999999999999998774 47899999999999999999999999987 5556788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
+..+|.++...|++++|+.++++++.+.+ ....++..+|.++...|
T Consensus 80 ~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 80 WYNLGNAYYKQGDYDEAIEYYQKALELDP------NNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHhcc
Confidence 99999999999999999999999998765 34557788888877654
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.09 E-value=3.7e-10 Score=102.80 Aligned_cols=128 Identities=14% Similarity=0.189 Sum_probs=106.9
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
+...|++++|+..+++++.. .+....++..+|.+|...|++++|+.+|++++.+.+ ....++..+|.+
T Consensus 20 ~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~ 87 (177)
T 2e2e_A 20 FASQQNPEAQLQALQDKIRA------NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG------ENAELYAALATV 87 (177)
T ss_dssp CC-----CCCCHHHHHHHHH------CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC------SCHHHHHHHHHH
T ss_pred hhhccCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHH
Confidence 34678999999999999988 677788999999999999999999999999999876 336688999999
Q ss_pred -HHHcccccccCCCCCCCCCchHhHHhH--HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 150 -YHAKGKAIGKVGQQDPGEYPEEVKVCL--QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 150 -~~~~g~~~~~~~~~~~~~~~~~~~~~~--~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
+...|+ + ++|+.++++++.+ .+....++.++|.+|...|++++|+.+++++
T Consensus 88 l~~~~~~--------------------~~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 88 LYYQASQ--------------------HMTAQTRAMIDKALAL------DSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHTTT--------------------CCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhcCC--------------------cchHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 888998 8 9999999999987 3334568899999999999999999999999
Q ss_pred HHHHHHhCC
Q psy10738 227 LKIAREFGD 235 (609)
Q Consensus 227 l~~~~~~~~ 235 (609)
+.+.+....
T Consensus 142 l~~~p~~~~ 150 (177)
T 2e2e_A 142 MDLNSPRIN 150 (177)
T ss_dssp HHTCCTTSC
T ss_pred HhhCCCCcc
Confidence 988766544
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=99.05 E-value=4.8e-09 Score=104.69 Aligned_cols=226 Identities=5% Similarity=-0.109 Sum_probs=173.2
Q ss_pred HHhCCHH-HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 71 FYLGDYQ-KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK----------YDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 71 ~~~g~~~-~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
...|++. +|+.++.+++.+ .|....+++..+.++...|. +++++.++..++...+ ..
T Consensus 40 ~~~~e~s~eaL~~t~~~L~~------nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~P------Kn 107 (331)
T 3dss_A 40 RQAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------KS 107 (331)
T ss_dssp HHTTCCSHHHHHHHHHHHTT------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------TC
T ss_pred HHcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCC------CC
Confidence 3456665 799999999998 88889999999999988776 6788888888887766 55
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC-HHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN-FKQ 218 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~-~~~ 218 (609)
..+++..+.++...|.. .+++++.++.++++. .+....++.+.+.+....|. +++
T Consensus 108 y~aW~hR~wlL~~l~~~------------------~~~~EL~~~~k~l~~------dprNy~AW~~R~~vl~~l~~~~~e 163 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEP------------------NWARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPAE 163 (331)
T ss_dssp HHHHHHHHHHHHHCSSC------------------CHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHH
T ss_pred HHHHHHHHHHHhccCcc------------------cHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCcCHHH
Confidence 67899999999998830 189999999999987 45556789999999999998 699
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--------------GEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 284 (609)
+++++.++++..+.+.. ++.+.+.++... +.++++++++.+++.+.+.. ..+++
T Consensus 164 el~~~~~~I~~~p~N~S------AW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d------~SaW~ 231 (331)
T 3dss_A 164 ELAFTDSLITRNFSNYS------SWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAWF 231 (331)
T ss_dssp HHHHHHHHHHHCSCCHH------HHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTC------HHHHH
T ss_pred HHHHHHHHHHHCCCCHH------HHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 99999999987554433 888888888777 56889999999999988764 45665
Q ss_pred HHHHHHHHh-----------CCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH---HHcCChHHHHHHHHHHHHHH
Q psy10738 285 SLGNTYTLL-----------RDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH---AARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 285 ~la~~~~~~-----------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~---~~~g~~~~A~~~~~~al~l~ 350 (609)
.+..++... +.++++++++.+.+++.++. ..++..++.+. ...|..++...++.+.+++-
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~------~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN------KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc------chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 454444443 35788899999888887653 12233333322 23577888888888888765
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=99.04 E-value=6.9e-10 Score=111.28 Aligned_cols=240 Identities=8% Similarity=-0.072 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG-KYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g-~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
...++..+..+....+..++|+.++.+++.+ .|....+++..+.++...| .+++++.++.+++...+
T Consensus 53 y~~~~~~~r~~~~~~e~se~AL~lt~~~L~~------nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nP------ 120 (349)
T 3q7a_A 53 YKDAMDYFRAIAAKEEKSERALELTEIIVRM------NPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNL------ 120 (349)
T ss_dssp HHHHHHHHHHHHHTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTC------
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh------CchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCC------
Confidence 4456666666666667778999999999999 8889999999999999999 59999999999998766
Q ss_pred HHHHHHHHHHHHHHHc-c-cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCC
Q psy10738 138 SEGRALYNLGNVYHAK-G-KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGN 215 (609)
Q Consensus 138 ~~~~~~~~lg~~~~~~-g-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~ 215 (609)
....+++..+.++... + + +++++.++.++++. .+....++...+.+....|.
T Consensus 121 Kny~aW~hR~wlL~~l~~~~--------------------~~~EL~~~~k~L~~------dpkNy~AW~~R~wvl~~l~~ 174 (349)
T 3q7a_A 121 KSYQVWHHRLLLLDRISPQD--------------------PVSEIEYIHGSLLP------DPKNYHTWAYLHWLYSHFST 174 (349)
T ss_dssp CCHHHHHHHHHHHHHHCCSC--------------------CHHHHHHHHHHTSS------CTTCHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHhcCCC--------------------hHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhcc
Confidence 5567899999999888 7 6 88999999988865 45556788999999988888
Q ss_pred HH--------HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC-------HHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 216 FK--------QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE-------YQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 216 ~~--------~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-------~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
++ ++++++.++++..+.+.. ++.+.+.++...+. ++++++++.+++.+.+.. .
T Consensus 175 ~~~~~~~~~~eELe~~~k~I~~dp~N~S------AW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n------~ 242 (349)
T 3q7a_A 175 LGRISEAQWGSELDWCNEMLRVDGRNNS------AWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHN------V 242 (349)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTC------H
T ss_pred ccccchhhHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCC------H
Confidence 87 999999999887554433 88999999988887 789999999999887764 5
Q ss_pred HHHHHHHHHHHHhCCHHH----------------H-HHHHHHHHHHHHHh---cchhhHHHHHHHHHHHHHHcCChHHHH
Q psy10738 281 QACYSLGNTYTLLRDYPT----------------A-IDYHLRHLIIAQQL---MDRVGEGRACWSLGNAHAARGNHEKAL 340 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~----------------A-~~~~~~al~~~~~~---~~~~~~~~~~~~La~~~~~~g~~~~A~ 340 (609)
.+++.+..++...|.... . ......++.+.... +.......++..|+.+|...|+.++|.
T Consensus 243 SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~ 322 (349)
T 3q7a_A 243 SAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAA 322 (349)
T ss_dssp HHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHH
Confidence 677777778877776410 0 01111111111111 011345568889999999999999999
Q ss_pred HHHHHHHH
Q psy10738 341 YFATKHLE 348 (609)
Q Consensus 341 ~~~~~al~ 348 (609)
..++...+
T Consensus 323 ~~~~~l~~ 330 (349)
T 3q7a_A 323 KVFEKLSS 330 (349)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 88887543
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.04 E-value=3.5e-09 Score=88.20 Aligned_cols=110 Identities=23% Similarity=0.320 Sum_probs=95.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..+...|++++|+.+|++++...|.+. .++..+|.++...|++++|+.++++++.. .+....++
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~ 75 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH----VLYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDWGKGY 75 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH----HHHHHHHHHHHhhccHHHHHHHHHHHHHh------CcccHHHH
Confidence 455679999999999999999999999999874 48899999999999999999999999998 66678899
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
..+|.++...|++++|+.++++++++.+ ....++..++.+
T Consensus 76 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~~~~~~~l~~~ 115 (118)
T 1elw_A 76 SRKAAALEFLNRFEEAKRTYEEGLKHEA------NNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHcCC------CCHHHHHHHHHh
Confidence 9999999999999999999999988755 233455555554
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=99.03 E-value=3.4e-09 Score=89.27 Aligned_cols=116 Identities=38% Similarity=0.616 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
..++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++...+ ..
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~------~~ 76 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------NN 76 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH------CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------cc
Confidence 446666777777777777777777777665 344456666777777777777777777777666533 22
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL 213 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~ 213 (609)
..++..+|.++...|+ +++|+.++++++.+. +....++..+|.++...
T Consensus 77 ~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~~~~~ 124 (125)
T 1na0_A 77 AEAWYNLGNAYYKQGD--------------------YDEAIEYYQKALELD------PNNAEAKQNLGNAKQKQ 124 (125)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHC------TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC--------------------HHHHHHHHHHHHHhC------CCcHHHHHHHHHHHHhc
Confidence 3456667777777776 777777776666552 22234555566555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=99.03 E-value=1.6e-09 Score=111.25 Aligned_cols=130 Identities=16% Similarity=0.192 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC----------ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG----------DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
+..+..+|..++..|+|++|+.+|++++++.+... .......++.++|.+|..+|++++|+.++++++++
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 302 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI 302 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence 45788999999999999999999999999776532 34455679999999999999999999999999987
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHH
Q psy10738 270 AQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALY 341 (609)
Q Consensus 270 ~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~ 341 (609)
.+. ...+++.+|.+|..+|++++|+.+|++++++.+. ...++..++.++..+++++++..
T Consensus 303 ~p~------~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~------~~~~~~~l~~~~~~~~~~~~a~k 362 (370)
T 1ihg_A 303 DPS------NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE------DKAIQAELLKVKQKIKAQKDKEK 362 (370)
T ss_dssp CTT------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred Cch------hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHHHHHHHHHH
Confidence 654 3778999999999999999999999999988654 24578888999988888877754
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=99.03 E-value=2.1e-09 Score=92.92 Aligned_cols=101 Identities=23% Similarity=0.233 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..+..+|.+++..|++++|+.++++++.. .+....++.++|.++...|++++|+.++++++.+.+ ..
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~ 76 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITR------NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDG------QS 76 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhh------CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc------hh
Confidence 446777777777777777777777777776 555667777777777777777777777777777654 34
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE 192 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~ 192 (609)
..+++.+|.+|...|+ +++|+.++++++.+.+.
T Consensus 77 ~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 77 VKAHFFLGQCQLEMES--------------------YDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHHChh
Confidence 5567777777777777 77777777777776554
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.02 E-value=3.7e-09 Score=89.93 Aligned_cols=122 Identities=18% Similarity=0.170 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCcH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRA 277 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~ 277 (609)
.+.++..+|.++...|++++|+.++++++...+.. ..++.++|.++...|++++|+.++++++...+.. .+..
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 76 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTN------MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYR 76 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHH
Confidence 35678999999999999999999999999875432 3488999999999999999999999999999875 3444
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHc
Q psy10738 278 VEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333 (609)
Q Consensus 278 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~ 333 (609)
....+++.+|.++...|++++|+.++++++.+.+. ......++.+....
T Consensus 77 ~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 77 QIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRT-------PDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHH
Confidence 44788999999999999999999999999986432 23455555555443
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.01 E-value=1e-09 Score=119.07 Aligned_cols=181 Identities=9% Similarity=-0.036 Sum_probs=156.7
Q ss_pred HHHHhcCCh-HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC----------HHHHHHHHHHHHHHHHHcCChhh
Q psy10738 30 ERLCKAGDC-RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD----------YQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 30 ~~~~~~g~~-~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~----------~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
......|++ ++|+..+.+++..+|++.. +|+..+.++...|+ +++++.++.+++.. .+.
T Consensus 36 ~~~~~~~~~~eeal~~~~~~l~~nP~~~t----aW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~------~pK 105 (567)
T 1dce_A 36 FQKRQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPK 105 (567)
T ss_dssp HHHHHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CTT
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHCchhHH----HHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh------CCC
Confidence 344556665 5779999999999999854 89999999999998 99999999999998 888
Q ss_pred HHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc-cccccCCCCCCCCCchHhHHh
Q psy10738 99 EAKSSGNLGNTLKVMG--KYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG-KAIGKVGQQDPGEYPEEVKVC 175 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g--~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g-~~~~~~~~~~~~~~~~~~~~~ 175 (609)
...+|+..+.++...| ++++|+.++.+++++.+ ....+|...+.+....| .
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~------~N~~aW~~R~~~l~~l~~~-------------------- 159 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADE------RNFHCWDYRRFVAAQAAVA-------------------- 159 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTCCC--------------------
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcc------ccccHHHHHHHHHHHcCCC--------------------
Confidence 9999999999999999 77999999999999876 55779999999999999 7
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc--------------CCHHHHHHHHHHHHHHHHHhCChHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL--------------GNFKQAIYYHQERLKIAREFGDKAAERR 241 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~ 241 (609)
++++++++.++++. .+....+|++.|.++..+ +.+++|++++.+++.+.+....
T Consensus 160 ~~~el~~~~~~I~~------~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~s------ 227 (567)
T 1dce_A 160 PAEELAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQS------ 227 (567)
T ss_dssp HHHHHHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSH------
T ss_pred hHHHHHHHHHHHHH------CCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCcc------
Confidence 99999999998876 455567899999998885 5689999999999998877665
Q ss_pred HHHHHHHHHHHhCCHHH
Q psy10738 242 ANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~ 258 (609)
+|+.++.++...+.+++
T Consensus 228 aW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 228 AWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHHHSCCCCCSC
T ss_pred HHHHHHHHHhcCCCccc
Confidence 88899999988888655
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=99.01 E-value=7.4e-09 Score=88.34 Aligned_cols=103 Identities=15% Similarity=0.055 Sum_probs=89.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
++..|..++..|++++|+..|+++++..|+++. ...+++.+|.++...|++++|+.++++++...+ +.+....+++
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~~~~~ 80 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVY-TPNALYWLGESYYATRNFQLAEAQFRDLVSRYP---THDKAAGGLL 80 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT---TSTTHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCC---CCcccHHHHH
Confidence 345689999999999999999999999997753 345889999999999999999999999998721 1222378999
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+|.++...|++++|+.++++++...+
T Consensus 81 ~la~~~~~~g~~~~A~~~~~~~~~~~p 107 (129)
T 2xev_A 81 KLGLSQYGEGKNTEAQQTLQQVATQYP 107 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 999999999999999999999998765
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=99.01 E-value=7.6e-09 Score=87.94 Aligned_cols=104 Identities=22% Similarity=0.360 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc-CCcHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL-NDKLS 138 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~-~d~~~ 138 (609)
+.++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+.. .+...
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~ 77 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHH
Confidence 568899999999999999999999999998 56678899999999999999999999999999998865 33334
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
...+++.+|.+|...|+ +++|+.++++++.+
T Consensus 78 ~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 78 IAKAYARIGNSYFKEEK--------------------YKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHh
Confidence 47899999999999999 99999999999886
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=99.00 E-value=5e-11 Score=127.01 Aligned_cols=128 Identities=14% Similarity=0.095 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
.+.++..+|.++...|++++|+.+|++++++.+ ..+.++.++|.+|...|+ +++
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p------~~~~~~~~lg~~~~~~g~--------------------~~~ 58 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNP------SNAIYYGNRSLAYLRTEC--------------------YGY 58 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCC------ccHHHHHHHHHHHHHhcC--------------------HHH
Confidence 445566667777777777777777777777644 335677777777777777 777
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH--HHHhCCH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS--HIFLGEY 256 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~--~~~~g~~ 256 (609)
|+.++++++++ .+....++.++|.+|..+|++++|+.++++++++.+.... ++.+++.+ +...|++
T Consensus 59 A~~~~~~al~l------~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~------~~~~l~~~~~~~~~g~~ 126 (477)
T 1wao_1 59 ALGDATRAIEL------DKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKD------AKMKYQECNKIVKQKAF 126 (477)
T ss_dssp HHHHHHHHHHS------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTT------HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHHHHHHHH
Confidence 77777777766 3334567777777777777777777777777777655444 55566666 6677777
Q ss_pred HHHHHHHH
Q psy10738 257 QAASEHYK 264 (609)
Q Consensus 257 ~~A~~~~~ 264 (609)
++|+..++
T Consensus 127 ~~A~~~~~ 134 (477)
T 1wao_1 127 ERAIAGDE 134 (477)
T ss_dssp CCC-----
T ss_pred HHHhcccc
Confidence 77777777
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.99 E-value=2.7e-09 Score=109.60 Aligned_cols=91 Identities=20% Similarity=0.277 Sum_probs=55.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC----------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME----------DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~----------d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
.+..+..+|..++..|++++|+.+|++++.+..... ..+....++.++|.+|..+|++++|+.+++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 345677888888888888888888888888644321 2344455555555555555555555555555555
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 129 ISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 129 l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+.+ ....+++.+|.+|...|+
T Consensus 302 ~~p------~~~~a~~~lg~~~~~~g~ 322 (370)
T 1ihg_A 302 IDP------SNTKALYRRAQGWQGLKE 322 (370)
T ss_dssp TCT------TCHHHHHHHHHHHHHTTC
T ss_pred hCc------hhHHHHHHHHHHHHHccC
Confidence 433 234455555555555555
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.96 E-value=3e-09 Score=90.38 Aligned_cols=98 Identities=11% Similarity=-0.029 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.++.+|..+...|++++|+..+++++.. .|..+.+++.+|.++...|++++|+.+|++++++.+ ....
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P------~~~~ 86 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIA 86 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHH
Confidence 4678999999999999999999999999 888899999999999999999999999999999877 4566
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
++..+|.+|...|+ +++|+..+++++++.+
T Consensus 87 ~~~~la~~~~~~g~--------------------~~~A~~~~~~al~~~P 116 (121)
T 1hxi_A 87 VHAALAVSHTNEHN--------------------ANAALASLRAWLLSQP 116 (121)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHhCc
Confidence 89999999999999 9999999999987643
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.95 E-value=7.1e-09 Score=90.53 Aligned_cols=103 Identities=20% Similarity=0.288 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...+...|..++..|++++|+.+|+++++..|++.. ...++..+|.+|...|++++|+.++++++.. .+....
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~------~~~~~~ 100 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD-QAVLHRNRAACHLKLEDYDKAETEASKAIEK------DGGDVK 100 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------TSCCHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH-HHHHHHHHHHHHHHHccHHHHHHHHHHHHhh------CccCHH
Confidence 445667799999999999999999999999886522 4568999999999999999999999999998 566688
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+++.+|.++...|++++|+.++++++.+.+
T Consensus 101 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 101 ALYRRSQALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999999999998765
|
| >4g5o_E G-protein-signaling modulator 2; galphai, goloco, galpha signaling, asymmetric cell division, cycle-signaling protein complex; HET: GDP CIT; 2.90A {Mus musculus} PDB: 4g5q_E* 4g5r_E* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.8e-10 Score=60.61 Aligned_cols=23 Identities=35% Similarity=0.788 Sum_probs=20.4
Q ss_pred CchHHHHHHHhhhcchhhhcccC
Q psy10738 536 DDGFLDMLIRCQGARLEDQRSHL 558 (609)
Q Consensus 536 ~~~~~~~~~~~q~~r~~~qr~~~ 558 (609)
|+|||++|+|.|+.||||||.-+
T Consensus 1 dedffslilrsqakrmdeqrvll 23 (26)
T 4g5o_E 1 DEDFFSLILRSQAKRMDEQRVLL 23 (26)
T ss_dssp -CCHHHHHHHHHHCSCGGGCBCC
T ss_pred CchHHHHHHHHHHHhhhHHHhhh
Confidence 68999999999999999999765
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.94 E-value=8.2e-09 Score=85.92 Aligned_cols=112 Identities=17% Similarity=0.195 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..++.+|..+...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+ ..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~ 71 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------DW 71 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc------cc
Confidence 457899999999999999999999999998 666788999999999999999999999999998865 34
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
..++..+|.++...|+ +++|+.++++++.+. +....++..++.+
T Consensus 72 ~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~~~~~~------~~~~~~~~~l~~~ 115 (118)
T 1elw_A 72 GKGYSRKAAALEFLNR--------------------FEEAKRTYEEGLKHE------ANNPQLKEGLQNM 115 (118)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHTTC------TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhh--------------------HHHHHHHHHHHHHcC------CCCHHHHHHHHHh
Confidence 6789999999999999 999999999998762 2233455555554
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.91 E-value=1e-09 Score=111.46 Aligned_cols=142 Identities=18% Similarity=0.063 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-----------cHHHHHHHHHHHHHHHHcccccccCCCCCCCC
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND-----------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGE 167 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d-----------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~ 167 (609)
.+..+..+|..+...|+|++|+.+|.+++.+.+.... ......+++++|.+|...|+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~------------ 245 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKR------------ 245 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTC------------
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCC------------
Confidence 4455566666666666666666666666655431100 00011367777777777777
Q ss_pred CchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 168 YPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247 (609)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 247 (609)
|++|+.++++++.+ .+....+++++|.+|..+|++++|+.+|++++++.+.... ++..++
T Consensus 246 --------~~~A~~~~~~al~~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~------a~~~L~ 305 (338)
T 2if4_A 246 --------YDEAIGHCNIVLTE------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKA------IRRELR 305 (338)
T ss_dssp --------CHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred --------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------HHHHHH
Confidence 77777777777766 2334567777777777777777777777777777665443 556666
Q ss_pred HH-HHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 248 NS-HIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 248 ~~-~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
.+ ....+..+++...|.+++...+.
T Consensus 306 ~l~~~~~~~~~~a~~~~~~~l~~~p~ 331 (338)
T 2if4_A 306 ALAEQEKALYQKQKEMYKGIFKGKDE 331 (338)
T ss_dssp --------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence 66 33445566666777776665544
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.91 E-value=1.8e-09 Score=109.63 Aligned_cols=138 Identities=15% Similarity=0.128 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchh-------------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLR-------------TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 88 (609)
...+...|..++..|+|++|+..|++++...|.+.. ....+++++|.+|..+|+|++|+.++++++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 258 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT 258 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 344566799999999999999999999999887541 0113889999999999999999999999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-cccccccCCCCCCCC
Q psy10738 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA-KGKAIGKVGQQDPGE 167 (609)
Q Consensus 89 ~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~-~g~~~~~~~~~~~~~ 167 (609)
+ .+....+++++|.+|..+|++++|+.+|++++.+.+ ....++..++.+... .+.
T Consensus 259 ~------~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p------~~~~a~~~L~~l~~~~~~~------------ 314 (338)
T 2if4_A 259 E------EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP------DDKAIRRELRALAEQEKAL------------ 314 (338)
T ss_dssp H------CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC----------------------------------------
T ss_pred h------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHHHHH------------
Confidence 8 777889999999999999999999999999999877 445677788877444 344
Q ss_pred CchHhHHhHHHHHHHHHHHHHHHH
Q psy10738 168 YPEEVKVCLQEAIKYYEQNLALMK 191 (609)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~al~~~~ 191 (609)
.+++...|.+++...+
T Consensus 315 --------~~~a~~~~~~~l~~~p 330 (338)
T 2if4_A 315 --------YQKQKEMYKGIFKGKD 330 (338)
T ss_dssp ------------------------
T ss_pred --------HHHHHHHHHHhhCCCC
Confidence 7778888888776643
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-08 Score=100.16 Aligned_cols=258 Identities=9% Similarity=-0.067 Sum_probs=170.6
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
....+..|+|..++.- +-+..+.+.. .....+.++|..+|++.... .+.+ ...+...++.
T Consensus 20 ikn~fy~G~yq~~i~e---~~~~~~~~~~---~~~~~~~Rs~iAlg~~~~~~-------------~~~~-~~~a~~~la~ 79 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQE---IEKFSKVTDN---TLLFYKAKTLLALGQYQSQD-------------PTSK-LGKVLDLYVQ 79 (310)
T ss_dssp HHHHHTTTCHHHHTHH---HHTSSCCCCH---HHHHHHHHHHHHTTCCCCCC-------------SSST-THHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHH---HHhcCccchH---HHHHHHHHHHHHcCCCccCC-------------CCCH-HHHHHHHHHH
Confidence 5667889999999983 4445555443 25566778888899887421 1222 2233444444
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
.+. +. |+..+++.+... .. ...++..+|.++...|+ +++|+..+.+.+.
T Consensus 80 ~~~--~~---a~~~l~~l~~~~----~~--~~~~~~~la~i~~~~g~--------------------~eeAL~~l~~~i~ 128 (310)
T 3mv2_B 80 FLD--TK---NIEELENLLKDK----QN--SPYELYLLATAQAILGD--------------------LDKSLETCVEGID 128 (310)
T ss_dssp HHT--TT---CCHHHHHTTTTS----CC--CHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHT
T ss_pred Hhc--cc---HHHHHHHHHhcC----CC--CcHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHhc
Confidence 432 22 666666654321 11 13345799999999999 9999999998754
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC--CHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLG--EYQAASEHYKRT 266 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g--~~~~A~~~~~~a 266 (609)
.. .......++..++.++..+|+.+.|.+.+++..+..+..............-|++.+..| ++.+|..+|+++
T Consensus 129 ~~----~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 129 ND----EAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp SS----CSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred cC----CCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 31 112456788899999999999999999999876653310000111123333344566667 999999999996
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHHHcCChHHHHHH
Q psy10738 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD----RVGEGRACWSLGNAHAARGNHEKALYF 342 (609)
Q Consensus 267 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~~~~~~~~~La~~~~~~g~~~~A~~~ 342 (609)
....+ + +.....+++ ++..+|++++|...++..++..++.+. ....+.++.+++.+...+|+ +|.++
T Consensus 205 ~~~~p---~-~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l 275 (310)
T 3mv2_B 205 SQTFP---T-WKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDL 275 (310)
T ss_dssp HTTSC---S-HHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHH
T ss_pred HHhCC---C-cccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHH
Confidence 54332 1 112223333 899999999999999988877665322 24467788899989999998 88888
Q ss_pred HHHHHHHH
Q psy10738 343 ATKHLEIS 350 (609)
Q Consensus 343 ~~~al~l~ 350 (609)
+.++.+..
T Consensus 276 ~~qL~~~~ 283 (310)
T 3mv2_B 276 TNQLVKLD 283 (310)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHhC
Confidence 88877654
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.90 E-value=1e-09 Score=116.76 Aligned_cols=121 Identities=17% Similarity=0.186 Sum_probs=102.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLG 107 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg 107 (609)
.|..++..|++++|+.+|+++++..|.+ +.++..+|.+|..+|++++|+.++++++++ .+..+.+++++|
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p~~----~~~~~~lg~~~~~~g~~~~A~~~~~~al~l------~p~~~~~~~~lg 81 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNPSN----AIYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKGYYRRA 81 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCTTC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCCcc----HHHHHHHHHHHHHhcCHHHHHHHHHHHHHh------CCCCHHHHHHHH
Confidence 4667788999999999999999999987 458999999999999999999999999998 777889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH--HHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 108 NTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV--YHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|..+|++++|+.+|++++++.+.. ..++.+++.+ +...|+ +++|+..++
T Consensus 82 ~~~~~~g~~~eA~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~g~--------------------~~~A~~~~~ 134 (477)
T 1wao_1 82 ASNMALGKFRAALRDYETVVKVKPHD------KDAKMKYQECNKIVKQKA--------------------FERAIAGDE 134 (477)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHSTTC------TTHHHHHHHHHHHHHHHH--------------------HCCC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHH--------------------HHHHhcccc
Confidence 99999999999999999999986632 3366677777 888898 888888888
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.90 E-value=5.3e-09 Score=88.04 Aligned_cols=91 Identities=19% Similarity=0.267 Sum_probs=77.6
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
..|++++|+.+|+++++.+++++. ...++..+|.+|...|++++|+.++++++++ .|....+++++|.++...
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~l~~~~~~~ 74 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKD-LAECYLGLGSTFRTLGEYRKAEAVLANGVKQ------FPNHQALRVFYAMVLYNL 74 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCcc-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCchHHHHHHHHHHHHc
Confidence 468999999999999998543332 3568999999999999999999999999999 777789999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~ 131 (609)
|++++|+.++++++...+
T Consensus 75 g~~~~A~~~~~~al~~~p 92 (117)
T 3k9i_A 75 GRYEQGVELLLKIIAETS 92 (117)
T ss_dssp TCHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHhCC
Confidence 999999999999998865
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=4.7e-08 Score=101.83 Aligned_cols=117 Identities=9% Similarity=0.039 Sum_probs=102.6
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHc--CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHH
Q psy10738 71 FYLGDYQKAMQYHKQDLTLARNM--EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNL 146 (609)
Q Consensus 71 ~~~g~~~~A~~~~~~al~~~~~~--~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~l 146 (609)
...|+|++|+..+++++++..+. .+++..+.++.++|.+|..+|+|++|+.++++++++.... .+.+..+..+++|
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nL 388 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKL 388 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 35689999999999999998765 4678899999999999999999999999999999999876 4577899999999
Q ss_pred HHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHH
Q psy10738 147 GNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLG 207 (609)
Q Consensus 147 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg 207 (609)
|.+|..+|+ |++|+.+|++|+++.... .+++....+..+|.
T Consensus 389 a~~~~~qg~--------------------~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l~ 431 (433)
T 3qww_A 389 GRLYMGLEN--------------------KAAGEKALKKAIAIMEVAHGKDHPYISEIKQEIE 431 (433)
T ss_dssp HHHHHHTTC--------------------HHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred HHHHHhccC--------------------HHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHh
Confidence 999999999 999999999999999876 45666666665553
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.87 E-value=3.5e-09 Score=92.90 Aligned_cols=88 Identities=11% Similarity=0.124 Sum_probs=80.0
Q ss_pred hcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCH----------HHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDY----------QKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 34 ~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~----------~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
+.+.|++|+..++++++++|++.. +|.++|.++..++++ ++|+..|++++++ .|....++
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~ae----a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~l------dP~~~~A~ 83 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDEAV 83 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHh------CcCcHHHH
Confidence 456789999999999999999854 889999999998875 5999999999999 88999999
Q ss_pred HHHHHHHHHcC-----------CHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMG-----------KYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g-----------~~~~A~~~~~~al~l~~ 131 (609)
+++|.+|..+| ++++|+.+|++|+++.+
T Consensus 84 ~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 84 WCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 99999999885 89999999999999977
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.8e-08 Score=100.77 Aligned_cols=130 Identities=15% Similarity=0.070 Sum_probs=111.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh-----CCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc--CCh
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQA-----GTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM--EDK 96 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~-----~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~d~ 96 (609)
.+......+..+|+|++|+..++++++. +++++ ..+.++.++|.+|..+|+|++|+.++++++.+.++. .+.
T Consensus 289 ~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H 367 (429)
T 3qwp_A 289 ESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINI-YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH 367 (429)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccch-HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence 3444466778899999999999999975 34444 477899999999999999999999999999998875 578
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcc
Q psy10738 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 97 ~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g 154 (609)
+..+..+++||.+|..+|++++|+.++++|+++.... .+++....++.+|+.+...++
T Consensus 368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999876 356678888888888876543
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=5.3e-08 Score=101.45 Aligned_cols=116 Identities=14% Similarity=0.078 Sum_probs=99.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 111 KVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 111 ~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
...|+|++|+..+++++++.... .+.+..+.++.+||.+|..+|+ |++|+.++++++.
T Consensus 309 ~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~--------------------~~eA~~~~~~aL~ 368 (433)
T 3qww_A 309 KHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQD--------------------WEGALKYGQKIIK 368 (433)
T ss_dssp TTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHH
T ss_pred hhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcC--------------------HHHHHHHHHHHHH
Confidence 35689999999999999998765 3566889999999999999999 9999999999999
Q ss_pred HHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHH
Q psy10738 189 LMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF--GDKAAERRANSNL 246 (609)
Q Consensus 189 ~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~l 246 (609)
+.++. .+++..+..+++||.+|..+|++++|+.+|++|+++.... .+.+....+..+|
T Consensus 369 i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~l 430 (433)
T 3qww_A 369 PYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQEI 430 (433)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred HHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHH
Confidence 99887 5789999999999999999999999999999999998874 3334444444443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.85 E-value=1.8e-08 Score=85.95 Aligned_cols=102 Identities=17% Similarity=0.073 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.++.+|.+++..|++++|+..+++++... .+.+....+++.+|.++...|++++|+.+|++++...+.. .....
T Consensus 4 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~---p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~---~~~~~ 77 (129)
T 2xev_A 4 TAYNVAFDALKNGKYDDASQLFLSFLELY---PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTH---DKAAG 77 (129)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHC---SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS---TTHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHC---CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCC---cccHH
Confidence 45677888888888888888888777652 1223334677788888888888888888888877765422 22356
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+++.+|.+|...|+ +++|+.++++++..
T Consensus 78 ~~~~la~~~~~~g~--------------------~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 78 GLLKLGLSQYGEGK--------------------NTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHH
Confidence 77778888888887 88888888777765
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=5e-08 Score=101.80 Aligned_cols=129 Identities=15% Similarity=0.146 Sum_probs=110.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQL--NDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKY 182 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~--~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 182 (609)
....-+..+|+|++|+..+++++++.... .+.+..+.++.++|.+|..+|+ |++|+.+
T Consensus 292 ~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~--------------------~~eA~~~ 351 (429)
T 3qwp_A 292 KKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGL--------------------LEEALFY 351 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTC--------------------HHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhcc--------------------HHHHHHH
Confidence 33445667899999999999999876554 3556889999999999999999 9999999
Q ss_pred HHHHHHHHHHh--CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHHHh
Q psy10738 183 YEQNLALMKEI--NDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF--GDKAAERRANSNLGNSHIFL 253 (609)
Q Consensus 183 ~~~al~~~~~~--~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~la~~~~~~ 253 (609)
+++++.+.+.. .+++..+..+++||.+|..+|++++|+.++++|+++.... .+.+....++.+|+.+...+
T Consensus 352 ~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~ 426 (429)
T 3qwp_A 352 GTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLILLLEECDANI 426 (429)
T ss_dssp HHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHH
Confidence 99999999887 6789999999999999999999999999999999999884 45566777778888776543
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.84 E-value=3.1e-08 Score=82.89 Aligned_cols=89 Identities=20% Similarity=0.229 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDE 118 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~ 118 (609)
++|+..|+++++..|++. .+++.+|.+|...|++++|+.++++++.+ .+....+++.+|.+|...|++++
T Consensus 2 ~~a~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~~~~~la~~~~~~g~~~~ 71 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM----LLRFTLGKTYAEHEQFDAALPHLRAALDF------DPTYSVAWKWLGKTLQGQGDRAG 71 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHH
T ss_pred hHHHHHHHHHHHhCCCcH----HHHHHHHHHHHHccCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHcCCHHH
Confidence 368899999999999885 48899999999999999999999999998 67778899999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCcH
Q psy10738 119 AMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 119 A~~~~~~al~l~~~~~d~~ 137 (609)
|+.+|++++.+.+..++..
T Consensus 72 A~~~~~~al~~~~~~~~~~ 90 (115)
T 2kat_A 72 ARQAWESGLAAAQSRGDQQ 90 (115)
T ss_dssp HHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHhccccccHH
Confidence 9999999999998766543
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.9e-08 Score=87.80 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..+..+|..++..|++++|+.++++++... .+......++..+|.+|...|++++|+.++++++.+.+ ..
T Consensus 28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~---~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~------~~ 98 (148)
T 2dba_A 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLD---ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDG------GD 98 (148)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC---CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTS------CC
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc---ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCc------cC
Confidence 4577888888888888888888888887761 11222377888888888888888888888888887644 23
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
..+++.+|.++...|+ +++|+.++++++.+
T Consensus 99 ~~~~~~~a~~~~~~~~--------------------~~~A~~~~~~al~~ 128 (148)
T 2dba_A 99 VKALYRRSQALEKLGR--------------------LDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc
Confidence 5677888888888888 88888888888776
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.80 E-value=7e-08 Score=94.83 Aligned_cols=195 Identities=11% Similarity=-0.017 Sum_probs=135.7
Q ss_pred HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 41 GVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM 120 (609)
Q Consensus 41 A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~ 120 (609)
|+..|++.+...+.+. ..+..+|.++...|++++|+.++.+++.. +.......++..++.++..+|+.+.|.
T Consensus 85 a~~~l~~l~~~~~~~~----~~~~~la~i~~~~g~~eeAL~~l~~~i~~----~~~~~~lea~~l~vqi~L~~~r~d~A~ 156 (310)
T 3mv2_B 85 NIEELENLLKDKQNSP----YELYLLATAQAILGDLDKSLETCVEGIDN----DEAEGTTELLLLAIEVALLNNNVSTAS 156 (310)
T ss_dssp CCHHHHHTTTTSCCCH----HHHHHHHHHHHHHTCHHHHHHHHHHHHTS----SCSTTHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCc----HHHHHHHHHHHHcCCHHHHHHHHHHHhcc----CCCcCcHHHHHHHHHHHHHCCCHHHHH
Confidence 6777777776553332 24568999999999999999999998654 111367889999999999999999999
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc--cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHH
Q psy10738 121 VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG--KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198 (609)
Q Consensus 121 ~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~ 198 (609)
+.+++..+..+..-.......+...-|++....| + +.+|..+|++.... .++ ..
T Consensus 157 k~l~~~~~~~~d~~~~~d~~l~~Laea~v~l~~g~~~--------------------~q~A~~~f~El~~~---~p~-~~ 212 (310)
T 3mv2_B 157 TIFDNYTNAIEDTVSGDNEMILNLAESYIKFATNKET--------------------ATSNFYYYEELSQT---FPT-WK 212 (310)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHTCST--------------------TTHHHHHHHHHHTT---SCS-HH
T ss_pred HHHHHHHhcCccccccchHHHHHHHHHHHHHHhCCcc--------------------HHHHHHHHHHHHHh---CCC-cc
Confidence 9999876653200000122223333354566666 6 89999999986443 222 11
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh----HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK----AAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQD 272 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~----~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 272 (609)
....+.+ ++..+|++++|...++..++..+..+.. ...+.++.+++.+...+|+ +|.+++.++.+..++
T Consensus 213 ~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~ 285 (310)
T 3mv2_B 213 TQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHE 285 (310)
T ss_dssp HHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCC
T ss_pred cHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCC
Confidence 2233333 8999999999999999888877663221 1234578888888888898 888888888776654
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-08 Score=83.38 Aligned_cols=96 Identities=21% Similarity=0.268 Sum_probs=86.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhh--HHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLG--EAKSS 103 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~--~~~a~ 103 (609)
...|..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.. .+. ...++
T Consensus 10 ~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~~a~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~ 79 (112)
T 2kck_A 10 YLEGVLQYDAGNYTESIDLFEKAIQLDPEES----KYWLMKGKALYNLERYEEAVDCYNYVINV------IEDEYNKDVW 79 (112)
T ss_dssp GGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHT------SCCTTCHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CcccchHHHH
Confidence 3458899999999999999999999999874 47899999999999999999999999987 555 68899
Q ss_pred HHHHHHHHHc-CCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVM-GKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~-g~~~~A~~~~~~al~l~~ 131 (609)
..+|.++... |++++|+.++.+++...+
T Consensus 80 ~~l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 80 AAKADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 9999999999 999999999999876543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=98.79 E-value=1.2e-08 Score=110.61 Aligned_cols=177 Identities=6% Similarity=-0.103 Sum_probs=151.2
Q ss_pred HhCCH-HHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 72 YLGDY-QKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK----------YDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 72 ~~g~~-~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~----------~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
..|++ ++|+..+.+++.+ .|....+|+..+.++...|+ +++|+.++.+++...+ ...
T Consensus 40 ~~~~~~eeal~~~~~~l~~------nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~p------K~y 107 (567)
T 1dce_A 40 QAGELDESVLELTSQILGA------NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNP------KSY 107 (567)
T ss_dssp HTTCCSHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCT------TCH
T ss_pred HcCCCCHHHHHHHHHHHHH------CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCC------CCH
Confidence 34444 6789999999999 88999999999999999998 9999999999998776 567
Q ss_pred HHHHHHHHHHHHcc--cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC-CHH
Q psy10738 141 RALYNLGNVYHAKG--KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG-NFK 217 (609)
Q Consensus 141 ~~~~~lg~~~~~~g--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~ 217 (609)
.+|++.+.++...| + ++++++++.+++++ .+....+|.+.+.+....| .++
T Consensus 108 ~aW~hR~w~l~~l~~~~--------------------~~~el~~~~k~l~~------d~~N~~aW~~R~~~l~~l~~~~~ 161 (567)
T 1dce_A 108 GTWHHRCWLLSRLPEPN--------------------WARELELCARFLEA------DERNFHCWDYRRFVAAQAAVAPA 161 (567)
T ss_dssp HHHHHHHHHHHTCSSCC--------------------HHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTCCCHH
T ss_pred HHHHHHHHHHHHccccc--------------------HHHHHHHHHHHHhh------ccccccHHHHHHHHHHHcCCChH
Confidence 79999999999999 5 79999999999998 4555779999999999999 999
Q ss_pred HHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh--------------CCHHHHHHHHHHHHHHHHHcCCcHHHHHHH
Q psy10738 218 QAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL--------------GEYQAASEHYKRTLVLAQDLGDRAVEAQAC 283 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~--------------g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 283 (609)
++++++.++++..+... .+|.+.+.++... +.+++|++++.+|+.+.+.. ..+|
T Consensus 162 ~el~~~~~~I~~~p~n~------saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~------~saW 229 (567)
T 1dce_A 162 EELAFTDSLITRNFSNY------SSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPND------QSAW 229 (567)
T ss_dssp HHHHHHHTTTTTTCCCH------HHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSC------SHHH
T ss_pred HHHHHHHHHHHHCCCCc------cHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCC------ccHH
Confidence 99999999988654433 3888889888875 56799999999999887764 5688
Q ss_pred HHHHHHHHHhCCHHH
Q psy10738 284 YSLGNTYTLLRDYPT 298 (609)
Q Consensus 284 ~~la~~~~~~g~~~~ 298 (609)
+.++.++...+.+++
T Consensus 230 ~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 230 FYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCCSC
T ss_pred HHHHHHHhcCCCccc
Confidence 888999988888665
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.77 E-value=9.4e-09 Score=84.75 Aligned_cols=98 Identities=17% Similarity=0.178 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
++..+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++++.+. .....
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~----~~~~~ 77 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL------DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED----EYNKD 77 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC----TTCHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh------CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc----cchHH
Confidence 6788999999999999999999999998 5666789999999999999999999999999987552 11467
Q ss_pred HHHHHHHHHHHc-ccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAK-GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 142 ~~~~lg~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
++..+|.++... |+ +++|+.++++++..
T Consensus 78 ~~~~l~~~~~~~~~~--------------------~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 78 VWAAKADALRYIEGK--------------------EVEAEIAEARAKLE 106 (112)
T ss_dssp HHHHHHHHHTTCSSC--------------------SHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHhCC--------------------HHHHHHHHHHHhhc
Confidence 899999999999 99 99999999988754
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.75 E-value=9.1e-09 Score=86.58 Aligned_cols=86 Identities=12% Similarity=0.181 Sum_probs=49.5
Q ss_pred cCCHHHHHHHHHHHHHH---HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 113 MGKYDEAMVCCKRHLEI---SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 113 ~g~~~~A~~~~~~al~l---~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+|++++|+.+|++++++ .+ ....++.++|.+|...|+ +++|+.++++++++
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p------~~~~~~~~lg~~~~~~~~--------------------~~~A~~~~~~al~~ 56 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGK------DLAECYLGLGSTFRTLGE--------------------YRKAEAVLANGVKQ 56 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHH------HHHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCc------cHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh
Confidence 45666666666666654 23 445566666666666666 66666666666655
Q ss_pred HHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 190 ~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 230 (609)
.+....++.++|.++...|++++|+.++++++...
T Consensus 57 ------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 91 (117)
T 3k9i_A 57 ------FPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAET 91 (117)
T ss_dssp ------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ------CCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 22234556666666666666666666666666554
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.70 E-value=4.9e-07 Score=99.50 Aligned_cols=230 Identities=11% Similarity=-0.033 Sum_probs=154.7
Q ss_pred HHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHH-HHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHH
Q psy10738 39 RAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAM-QYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYD 117 (609)
Q Consensus 39 ~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~-~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~ 117 (609)
+.....|++++...|..+. +|...+..+...|+.++|. ..|++|+.. .|.....+...+......|+++
T Consensus 326 ~Rv~~~Ye~aL~~~p~~~~----lW~~ya~~~~~~~~~~~a~r~il~rAi~~------~P~s~~Lwl~~a~~ee~~~~~e 395 (679)
T 4e6h_A 326 ARMTYVYMQAAQHVCFAPE----IWFNMANYQGEKNTDSTVITKYLKLGQQC------IPNSAVLAFSLSEQYELNTKIP 395 (679)
T ss_dssp HHHHHHHHHHHHHTTTCHH----HHHHHHHHHHHHSCCTTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHcCCCHH----HHHHHHHHHHhcCcHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHhCCHH
Confidence 4467889999999998754 8888999999999999997 999999876 4555677888999999999999
Q ss_pred HHHHHHHHHHHHHHH--------cCC--------cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 118 EAMVCCKRHLEISRQ--------LND--------KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 118 ~A~~~~~~al~l~~~--------~~d--------~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
+|...|++++...+. ... ......++...+......|. .+.|..
T Consensus 396 ~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~--------------------l~~AR~ 455 (679)
T 4e6h_A 396 EIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG--------------------LAASRK 455 (679)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC--------------------HHHHHH
Confidence 999999999986431 110 00233456666666666676 777777
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLG-NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
.|.+|++.... ....+|...|.+....| +++.|...|+.+++..+.... .+...+......|+.+.|.
T Consensus 456 vf~~A~~~~~~-----~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~------~w~~y~~fe~~~~~~~~AR 524 (679)
T 4e6h_A 456 IFGKCRRLKKL-----VTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGE------YINKYLDFLIYVNEESQVK 524 (679)
T ss_dssp HHHHHHHTGGG-----SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHH------HHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHhcCC-----CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchH------HHHHHHHHHHhCCCHHHHH
Confidence 77777654111 11223444455555544 377777777777776543222 3445555666677777777
Q ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 261 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
..|++++...+. ......++..........|+.+.+....+++.+..++
T Consensus 525 ~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 525 SLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp HHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 777777765431 1112345555566666677777777777777666554
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.70 E-value=6.6e-09 Score=85.96 Aligned_cols=91 Identities=21% Similarity=0.274 Sum_probs=82.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..+..+|.+++..|++++|+.+|++++.+ .+....++.++|.++...|++++|+.++++++.+.+..++....
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 77 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITA------QPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIR 77 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHH
Confidence 457899999999999999999999999998 67778999999999999999999999999999988766555566
Q ss_pred HHHHHHHHHHHHHcccc
Q psy10738 140 GRALYNLGNVYHAKGKA 156 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~ 156 (609)
..+++.+|.++...|++
T Consensus 78 ~~~~~~~~~~~~~~~~~ 94 (111)
T 2l6j_A 78 SKLQYRLELAQGAVGSV 94 (111)
T ss_dssp HHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHhH
Confidence 88999999999999983
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=83.98 Aligned_cols=97 Identities=24% Similarity=0.258 Sum_probs=82.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
.+...|..++..|++++|+..|+++++..|.++ .++..+|.++...|++++|+.++++++.+.+..++......++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP----VGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence 455679999999999999999999999999884 4889999999999999999999999998844433334448899
Q ss_pred HHHHHHHHHcCCHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCK 124 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~ 124 (609)
+.+|.++...|+++.|+..++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHH
Confidence 999999999998887766544
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1e-06 Score=97.01 Aligned_cols=228 Identities=6% Similarity=-0.098 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccc
Q psy10738 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAM-VCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156 (609)
Q Consensus 78 ~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~-~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~ 156 (609)
.....|++++.. .+.....|...+..+...|+.++|. ..|++|+...+ .....+..++.+....|+
T Consensus 327 Rv~~~Ye~aL~~------~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P------~s~~Lwl~~a~~ee~~~~- 393 (679)
T 4e6h_A 327 RMTYVYMQAAQH------VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP------NSAVLAFSLSEQYELNTK- 393 (679)
T ss_dssp HHHHHHHHHHHH------TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHH------cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhCC-
Confidence 345667777776 6667889999999999999999997 99999998665 234567788888899999
Q ss_pred cccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHH--------hCC--------hHHHHHHHHHHHHHHHHcCCHHHHH
Q psy10738 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKE--------IND--------TAAQGRACGNLGNTYYLLGNFKQAI 220 (609)
Q Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~--------~~~--------~~~~~~~~~~lg~~~~~~g~~~~A~ 220 (609)
+++|...|++++..... ... ......+|...+.+....|+.+.|.
T Consensus 394 -------------------~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR 454 (679)
T 4e6h_A 394 -------------------IPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASR 454 (679)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred -------------------HHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHH
Confidence 99999999999876421 110 1124457778888888899999999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 221 YYHQERLKIAREFGDKAAERRANSNLGNSHIFLG-EYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTA 299 (609)
Q Consensus 221 ~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g-~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 299 (609)
..|.+|++..+.... .+|...|.+....+ +++.|...|+.+++..+.. ...+...+......|+.+.|
T Consensus 455 ~vf~~A~~~~~~~~~-----~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~------~~~w~~y~~fe~~~~~~~~A 523 (679)
T 4e6h_A 455 KIFGKCRRLKKLVTP-----DIYLENAYIEYHISKDTKTACKVLELGLKYFATD------GEYINKYLDFLIYVNEESQV 523 (679)
T ss_dssp HHHHHHHHTGGGSCT-----HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHhcCCCCh-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCc------hHHHHHHHHHHHhCCCHHHH
Confidence 999999876222211 24555666665654 5999999999999987653 44556677788889999999
Q ss_pred HHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 300 IDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 300 ~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
...|++++...+. ......++......-...|+.+.+....+++.+...
T Consensus 524 R~lferal~~~~~---~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P 572 (679)
T 4e6h_A 524 KSLFESSIDKISD---SHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFP 572 (679)
T ss_dssp HHHHHHHTTTSSS---TTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHhcCC---HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 9999999876542 123455777778888899999999999999988774
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.62 E-value=5.4e-08 Score=85.37 Aligned_cols=98 Identities=17% Similarity=0.234 Sum_probs=80.9
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY----------DEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 72 ~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~----------~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
+.+.|++|+..+++++++ .|..+.++.++|.++...|++ ++|+..|++++++.+ ....
T Consensus 14 r~~~feeA~~~~~~Ai~l------~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP------~~~~ 81 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------KKDE 81 (158)
T ss_dssp HHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------TCHH
T ss_pred HHhHHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCc------CcHH
Confidence 457899999999999999 889999999999999999876 599999999999988 6678
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM 190 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~ 190 (609)
+++++|.+|...|.. .| -..++..++++|+.+|++|+++-
T Consensus 82 A~~~LG~ay~~lg~l-------~P--~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 82 AVWCIGNAYTSFAFL-------TP--DETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHHHHHHHHHHHHH-------CC--CHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhccc-------Cc--chhhhhccHHHHHHHHHHHHHhC
Confidence 999999999998630 00 01222334999999999999983
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.60 E-value=4.4e-07 Score=73.79 Aligned_cols=72 Identities=11% Similarity=0.133 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL 137 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~ 137 (609)
..+++.+|.+|...|++++|+.+|++++++ .+....++..+|.+|...|++++|+.+|++++++.+..++..
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~ 78 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVET------DPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQK 78 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchh
Confidence 347888899999999999999999998888 666777888999999999999999999999998888666543
|
| >2om2_B Regulator of G-protein signalling 14 goloco motif peptide; arginine finger, RGS14 goloco, signaling protein; HET: GDP; 2.20A {Homo sapiens} PDB: 1kjy_B* 3onw_C* 3qi2_C* | Back alignment and structure |
|---|
Probab=98.60 E-value=2.4e-08 Score=60.90 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=10.0
Q ss_pred chHHHHHHHhhhcchhhhcccCC
Q psy10738 537 DGFLDMLIRCQGARLEDQRSHLP 559 (609)
Q Consensus 537 ~~~~~~~~~~q~~r~~~qr~~~~ 559 (609)
|.||+||-|.|++|||||||.+.
T Consensus 3 e~ffdLLSR~Qs~R~dDQR~~l~ 25 (36)
T 2om2_B 3 EGLVELLNRVQSSGAHDQRGLLR 25 (36)
T ss_dssp HHHHHHHHHHHTCSCCSCSSSCC
T ss_pred hHHHHHHHHhccCcccccccccc
Confidence 34444444444444444444433
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.60 E-value=2.6e-07 Score=73.04 Aligned_cols=84 Identities=36% Similarity=0.584 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+.+++.+|.++...|++++|+.++++++.. .+....++..+|.++...|++++|+.++++++.+.+ .
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p------~ 75 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP------N 75 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------T
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC------C
Confidence 4568899999999999999999999999988 566788999999999999999999999999998865 4
Q ss_pred HHHHHHHHHHHHHHcc
Q psy10738 139 EGRALYNLGNVYHAKG 154 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g 154 (609)
...++.++|.++...|
T Consensus 76 ~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 76 NAEAKQNLGNAKQKQG 91 (91)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHhcC
Confidence 4568888998887654
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=98.56 E-value=7.6e-07 Score=70.27 Aligned_cols=82 Identities=29% Similarity=0.534 Sum_probs=72.7
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
..+...|..+...|++++|+.+|+++++..|.+. .++..+|.++...|++++|+.++++++.+ .+....+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~a~~~------~p~~~~~ 79 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA----EAWYNLGNAYYKQGDYDEAIEYYQKALEL------DPNNAEA 79 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH----HHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CCCCHHH
Confidence 3445569999999999999999999999999874 48899999999999999999999999998 6777889
Q ss_pred HHHHHHHHHHcC
Q psy10738 103 SGNLGNTLKVMG 114 (609)
Q Consensus 103 ~~~lg~~~~~~g 114 (609)
+.++|.++...|
T Consensus 80 ~~~l~~~~~~~g 91 (91)
T 1na3_A 80 KQNLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHhcC
Confidence 999999987765
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=98.53 E-value=7e-07 Score=74.43 Aligned_cols=87 Identities=18% Similarity=0.171 Sum_probs=76.4
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccccc
Q psy10738 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157 (609)
Q Consensus 78 ~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~ 157 (609)
+|+..+++++.. .+....+++.+|.+|...|++++|+.+|++++.+.+ ....+++++|.+|...|+
T Consensus 3 ~a~~~~~~al~~------~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~-- 68 (115)
T 2kat_A 3 AITERLEAMLAQ------GTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP------TYSVAWKWLGKTLQGQGD-- 68 (115)
T ss_dssp CHHHHHHHHHTT------TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC--
T ss_pred HHHHHHHHHHHh------CCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC------CcHHHHHHHHHHHHHcCC--
Confidence 577888888876 667788999999999999999999999999999866 446689999999999999
Q ss_pred ccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCCh
Q psy10738 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196 (609)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 196 (609)
+++|+.+|++++.+.+..++.
T Consensus 69 ------------------~~~A~~~~~~al~~~~~~~~~ 89 (115)
T 2kat_A 69 ------------------RAGARQAWESGLAAAQSRGDQ 89 (115)
T ss_dssp ------------------HHHHHHHHHHHHHHHHHHTCH
T ss_pred ------------------HHHHHHHHHHHHHhccccccH
Confidence 999999999999997766553
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.52 E-value=8.9e-07 Score=76.81 Aligned_cols=110 Identities=16% Similarity=0.132 Sum_probs=94.8
Q ss_pred CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH---
Q psy10738 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV--- 112 (609)
Q Consensus 36 g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~--- 112 (609)
+++++|+.+|+++.+.+... +. +|.+|...+.+++|+.+|+++.+. ..+.+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~g~~~------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g 72 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNEMF------GC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKY 72 (138)
T ss_dssp HHHHHHHHHHHHHHHTTCTT------HH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHcCCCHh------hh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcCCC
Confidence 47899999999999987432 33 999999999999999999999875 456899999999999
Q ss_pred -cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 113 -MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA----KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 113 -~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
.+++++|+.+|+++.+. ....++++||.+|.. .++ +++|+.+|+++.
T Consensus 73 ~~~d~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G~g~~~d--------------------~~~A~~~~~~Aa 124 (138)
T 1klx_A 73 VKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAGKGVVKN--------------------EKQAVKTFEKAC 124 (138)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCC--------------------HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHCCCCCCcC--------------------HHHHHHHHHHHH
Confidence 89999999999999864 336689999999998 777 999999999988
Q ss_pred HH
Q psy10738 188 AL 189 (609)
Q Consensus 188 ~~ 189 (609)
+.
T Consensus 125 ~~ 126 (138)
T 1klx_A 125 RL 126 (138)
T ss_dssp HT
T ss_pred HC
Confidence 75
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.52 E-value=1.3e-05 Score=81.51 Aligned_cols=196 Identities=14% Similarity=0.121 Sum_probs=153.0
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-cCCHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL-LGNFKQ 218 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~ 218 (609)
-.+.+.||.+|...|+ +++-.+++......+..... ...+....++-..+.. -+..+.
T Consensus 19 e~~~~~l~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~k-ak~~k~v~~l~~~~~~~~~~~~~ 77 (394)
T 3txn_A 19 EQGILQQGELYKQEGK--------------------AKELADLIKVTRPFLSSISK-AKAAKLVRSLVDMFLDMDAGTGI 77 (394)
T ss_dssp HHHHHHHHHHHHHHTC--------------------HHHHHHHHHHTTTGGGGSCH-HHHHHHHHHHHHHHTTSCCCHHH
T ss_pred HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHhch-HHHHHHHHHHHHHHhcCCCcHHH
Confidence 3577899999999999 78777777665544433321 2223333333333332 355677
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 219 AIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPT 298 (609)
Q Consensus 219 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 298 (609)
-++.+.++++.+....-.......-..+|.+|+..|+|.+|...+.+.+.......+......++.....+|...+++.+
T Consensus 78 ~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k 157 (394)
T 3txn_A 78 EVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPK 157 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHH
Confidence 78888888888876655444444566899999999999999999999999888887888888899999999999999999
Q ss_pred HHHHHHHHHHHHHHh-cchhhHHHHHHHHHHHHH-HcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 299 AIDYHLRHLIIAQQL-MDRVGEGRACWSLGNAHA-ARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 299 A~~~~~~al~~~~~~-~~~~~~~~~~~~La~~~~-~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
+..++.+|..+...+ .++...+.....-|.++. ..++|..|..+|-++..-+.+.+.+
T Consensus 158 ~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~ 217 (394)
T 3txn_A 158 ARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSV 217 (394)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHH
T ss_pred HHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccH
Confidence 999999999998876 667778888888999999 8999999999999998877766643
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=98.49 E-value=5.8e-07 Score=73.07 Aligned_cols=71 Identities=15% Similarity=0.147 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 199 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
...+++++|.+|...|++++|+.+|++++++.+.... ++.++|.+|...|++++|+.+|++++.+.+..++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG------TYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 3567888888888888888888888888887665544 7888888888888888888888888888877655
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=98.46 E-value=3.9e-05 Score=77.96 Aligned_cols=214 Identities=14% Similarity=0.050 Sum_probs=159.8
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV-MGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~-~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
.+.+.||..|...|++++-.+++.........+. ....++....+-..+.. -+..+.-++.+..+++-+....-....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr 98 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSIS-KAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLR 98 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSC-HHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4678899999999999998888877665544332 22234444444444333 355677778888888877754443344
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
...-..+|.+|+..|+ |.+|...+.+.+.-++...+......++.....+|..+|++.++
T Consensus 99 ~~l~~kL~~l~~~~~~--------------------y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~ 158 (394)
T 3txn_A 99 QSLEARLIALYFDTAL--------------------YTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKA 158 (394)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhhh--------------------HHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHH
Confidence 4466689999999999 99999999999998888888888899999999999999999999
Q ss_pred HHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCH
Q psy10738 220 IYYHQERLKIAREF-GDKAAERRANSNLGNSHI-FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDY 296 (609)
Q Consensus 220 ~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 296 (609)
..++.++....... .++...+.....-|.++. ..++|..|..+|-++..-+...+.+. ...+...++.+-...++.
T Consensus 159 k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~-~~~~lkYlvL~aLl~~~r 236 (394)
T 3txn_A 159 RAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFEGFDSVDSVK-ALTSLKYMLLCKIMLGQS 236 (394)
T ss_dssp HHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHH-HHHHHHHHHHHHHHTTCG
T ss_pred HHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHhcccccccHH-HHHHHHHHHHHHHHcCCH
Confidence 99999999988775 677778888888999999 89999999999999876665444322 223333444455555553
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.44 E-value=6.5e-06 Score=82.32 Aligned_cols=141 Identities=15% Similarity=0.082 Sum_probs=107.8
Q ss_pred chhHHHHHHHHHHHHHhcCC---hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---C-CHHHHHHHHHHHHHHH
Q psy10738 18 GGNMCLELALEGERLCKAGD---CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---G-DYQKAMQYHKQDLTLA 90 (609)
Q Consensus 18 ~a~~~~~l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---g-~~~~A~~~~~~al~~~ 90 (609)
.....|+++++|..++..++ +.+|+.+|++|++++|+... ++..++.+|... + .......-+..++...
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~----A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~ 267 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTY----ARAEKALVDIVRHSQHPLDEKQLAALNTEIDNI 267 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHHhccCCCchhhHHHHHHHHHHH
Confidence 34567899999999888765 48899999999999999855 444445544321 1 1123334444555544
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch
Q psy10738 91 RNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170 (609)
Q Consensus 91 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 170 (609)
......+..+.++..++..+...|++++|+.++++|+.+.+ . ..++..+|.++...|+
T Consensus 268 ~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~------s-~~a~~llG~~~~~~G~--------------- 325 (372)
T 3ly7_A 268 VTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM------S-WLNYVLLGKVYEMKGM--------------- 325 (372)
T ss_dssp HTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC------C-HHHHHHHHHHHHHTTC---------------
T ss_pred HhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC------C-HHHHHHHHHHHHHCCC---------------
Confidence 44455677888999999999999999999999999999852 1 4577899999999999
Q ss_pred HhHHhHHHHHHHHHHHHHH
Q psy10738 171 EVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 171 ~~~~~~~~A~~~~~~al~~ 189 (609)
+++|++.|.+|+.+
T Consensus 326 -----~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 326 -----NREAADAYLTAFNL 339 (372)
T ss_dssp -----HHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHhc
Confidence 99999999999988
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.41 E-value=7.6e-07 Score=71.84 Aligned_cols=89 Identities=18% Similarity=0.232 Sum_probs=73.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHH-HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSA-IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~-~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
+..|..++..|++++|+..|+++++..|.+ .. +++.+|.+|...|++++|+.+|++++.+ .+....++.
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~----~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~ 73 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVG----KDEAYYLMGNAYRKLGDWQKALNNYQSAIEL------NPDSPALQA 73 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSST----HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTSTHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCc----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCCcHHHHH
Confidence 456889999999999999999999999987 34 7899999999999999999999999998 555444443
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+ +.+.+|+.+|++++...+.
T Consensus 74 ~--------~~~~~a~~~~~~~~~~~p~ 93 (99)
T 2kc7_A 74 R--------KMVMDILNFYNKDMYNQLE 93 (99)
T ss_dssp H--------HHHHHHHHHHCCTTHHHHC
T ss_pred H--------HHHHHHHHHHHHHhccCcc
Confidence 2 5677888888888777664
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=1.6e-06 Score=75.20 Aligned_cols=110 Identities=25% Similarity=0.332 Sum_probs=80.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA- 152 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~- 152 (609)
+++++|+.+|+++.+. ... .+. +|.+|...+.+++|+.+|+++.+. ....+++++|.+|..
T Consensus 9 ~d~~~A~~~~~~aa~~------g~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~--------g~~~a~~~Lg~~y~~G 70 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL------NEM--FGC--LSLVSNSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENG 70 (138)
T ss_dssp HHHHHHHHHHHHHHHT------TCT--THH--HHHHTCTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHcC------CCH--hhh--HHHHHHcCCCHHHHHHHHHHHHcC--------CCHHHHHHHHHHHHcC
Confidence 4677888888887765 211 222 888888888888888888888764 335678888888887
Q ss_pred ---cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHH
Q psy10738 153 ---KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQE 225 (609)
Q Consensus 153 ---~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~ 225 (609)
.++ +++|+.+|+++.+. ++ ..++.+||.+|.. .+++++|+.+|++
T Consensus 71 ~g~~~d--------------------~~~A~~~~~~Aa~~----g~----~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 122 (138)
T 1klx_A 71 KYVKKD--------------------LRKAAQYYSKACGL----ND----QDGCLILGYKQYAGKGVVKNEKQAVKTFEK 122 (138)
T ss_dssp SSSCCC--------------------HHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred CCCCcc--------------------HHHHHHHHHHHHcC----CC----HHHHHHHHHHHHCCCCCCcCHHHHHHHHHH
Confidence 566 88888888887653 22 4577888888888 7888888888888
Q ss_pred HHHH
Q psy10738 226 RLKI 229 (609)
Q Consensus 226 al~~ 229 (609)
+.+.
T Consensus 123 Aa~~ 126 (138)
T 1klx_A 123 ACRL 126 (138)
T ss_dssp HHHT
T ss_pred HHHC
Confidence 7664
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=98.16 E-value=3.3e-05 Score=77.26 Aligned_cols=150 Identities=11% Similarity=0.005 Sum_probs=94.4
Q ss_pred HHHHhCCcchhHHHHHHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCH----HHH
Q psy10738 47 AAIQAGTDDLRTLSAIYSQLGNAYFYLGD---YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKY----DEA 119 (609)
Q Consensus 47 ~al~~~~~~~~~~a~~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~----~~A 119 (609)
++....|.++..+ -++..|..+...+. +.+|+.+|++|+++ .|..+.++..++.+|.....+ ...
T Consensus 185 r~~~~~p~~~~Ay--dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l------DP~~a~A~A~la~a~~~~~~~~~~~~~~ 256 (372)
T 3ly7_A 185 TLQKILPHRGALL--TNFYQAHDYLLHGDDKSLNRASELLGEIVQS------SPEFTYARAEKALVDIVRHSQHPLDEKQ 256 (372)
T ss_dssp HHHHHSCSSGGGH--HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHhccCCCCHHHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHHhccCCCchhh
Confidence 4455567776633 45556666666544 58899999999999 888888888888887632111 112
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 199 (609)
..-+.+++.........+..+.++..++.++...|+ +++|+.++++++.+- + .
T Consensus 257 ~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd--------------------~d~A~~~l~rAl~Ln------~-s 309 (372)
T 3ly7_A 257 LAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGK--------------------TDESYQAINTGIDLE------M-S 309 (372)
T ss_dssp HHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHHC------C-C
T ss_pred HHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHhcC------C-C
Confidence 222333333222222233455566667776766777 777777777777762 1 1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
..++..+|.++...|++++|++.|.+|+.+.+
T Consensus 310 ~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 310 WLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 34556677777777777777777777776644
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.13 E-value=4.8e-06 Score=66.99 Aligned_cols=62 Identities=16% Similarity=0.210 Sum_probs=57.3
Q ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 64 SQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK-SSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 64 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~-a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+.+|.++...|++++|+..+++++.. .+.... +++.+|.+|...|++++|+.+|++++.+.+
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQT------EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH------CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH------CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56789999999999999999999998 666777 999999999999999999999999999876
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=98.09 E-value=0.00031 Score=67.35 Aligned_cols=92 Identities=14% Similarity=0.178 Sum_probs=76.5
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHHHHHh-CChHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLL-----GNFKQAIYYHQERLKIAREF-GDKAAERRANSN 245 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~ 245 (609)
+......|...+++++++- .....+.+|..+|.+|... |+.++|..+|++++++.+.. .+ +++.
T Consensus 175 Al~~l~~A~a~lerAleLD----P~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id------~~v~ 244 (301)
T 3u64_A 175 LPDTVHAAVMMLERACDLW----PSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPD------HHIT 244 (301)
T ss_dssp CHHHHHHHHHHHHHHHHHC----TTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSH------HHHH
T ss_pred HHHhHHHHHHHHHHHHHhC----CCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCch------HHHH
Confidence 3445788888999998882 2344678999999999995 99999999999999998854 44 7888
Q ss_pred HHHHHHH-hCCHHHHHHHHHHHHHHHHHc
Q psy10738 246 LGNSHIF-LGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 246 la~~~~~-~g~~~~A~~~~~~al~~~~~~ 273 (609)
+|..+.. .|++++|..++++++...+..
T Consensus 245 YA~~l~~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 245 YADALCIPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp HHHHTTTTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHcCCCCC
Confidence 9999888 499999999999999877663
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=98.02 E-value=5.5e-05 Score=61.68 Aligned_cols=82 Identities=22% Similarity=0.198 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG 358 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 358 (609)
+.-++.+|..+...|+|..|+.+|++|+........ ......++..||.++.++|++++|+.++++++.+. +.
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~------P~ 78 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PE 78 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC------CC
Confidence 456789999999999999999999999987754321 24567789999999999999999999999999875 44
Q ss_pred HHHHHHHHH
Q psy10738 359 QVTAQMNVT 367 (609)
Q Consensus 359 ~~~a~~~la 367 (609)
...+..+++
T Consensus 79 ~~~~~~n~~ 87 (104)
T 2v5f_A 79 HQRANGNLK 87 (104)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHhhHH
Confidence 456666665
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=97.99 E-value=2.8e-05 Score=63.46 Aligned_cols=74 Identities=20% Similarity=0.254 Sum_probs=48.8
Q ss_pred HHHHHHhcCChHHHHHHHHHHHHhCCcc---hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 28 EGERLCKAGDCRAGVAFFQAAIQAGTDD---LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 28 ~g~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
.|..++..|+|..|+.+|++|++..+.+ ......++..+|.+++.+|+++.|+.++++++.+ .|....+..
T Consensus 11 lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l------~P~~~~~~~ 84 (104)
T 2v5f_A 11 LGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL------DPEHQRANG 84 (104)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred HHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc------CCCCHHHHh
Confidence 4777777777777777777777653211 1224567777777777777777777777777776 555555555
Q ss_pred HHH
Q psy10738 105 NLG 107 (609)
Q Consensus 105 ~lg 107 (609)
+++
T Consensus 85 n~~ 87 (104)
T 2v5f_A 85 NLK 87 (104)
T ss_dssp HHH
T ss_pred hHH
Confidence 554
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.98 E-value=0.0011 Score=70.49 Aligned_cols=188 Identities=10% Similarity=-0.036 Sum_probs=100.2
Q ss_pred hcC-CCcchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHH
Q psy10738 12 QSG-GADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGD-YQKAMQYHKQDLTL 89 (609)
Q Consensus 12 ~~g-~~~~a~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~-~~~A~~~~~~al~~ 89 (609)
..| +...+..+|+.+ ...+-.|+++.+..+|++++...| +.+ +|..........++ .+.....|+.++..
T Consensus 6 ~~~~~i~~aR~vyer~---l~~~P~~~~e~~~~iferal~~~p-s~~----LW~~Y~~f~~~~~~~~~~i~~~fe~al~~ 77 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHA---RRLYMSKDYRSLESLFGRCLKKSY-NLD----LWMLYIEYVRKVSQKKFKLYEVYEFTLGQ 77 (493)
T ss_dssp ------CCHHHHHHHH---HHHHHTTCHHHHHHHHHHHSTTCC-CHH----HHHHHHHHHHHHC----CTHHHHHHHHHH
T ss_pred HcCcchHHHHHHHHHH---HHHCCCCCHHHHHHHHHHHhccCC-CHH----HHHHHHHHHHHhCchHHHHHHHHHHHHHH
Confidence 345 367777777654 445555999999999999999877 322 44444444334442 34456667776664
Q ss_pred HHHcCChhhHHHHHHHHHHHHH----HcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHH--------------------
Q psy10738 90 ARNMEDKLGEAKSSGNLGNTLK----VMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYN-------------------- 145 (609)
Q Consensus 90 ~~~~~d~~~~~~a~~~lg~~~~----~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~-------------------- 145 (609)
.|.++.....|......+. ..|+.+.+...|++++.+ +. .+....-..|..
T Consensus 78 ---vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~-P~-~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~ 152 (493)
T 2uy1_A 78 ---FENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQT-PM-GSLSELWKDFENFELELNKITGKKIVGDTLPI 152 (493)
T ss_dssp ---STTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTS-CC-TTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred ---cCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhC-hh-hhHHHHHHHHHHHHHHhccccHHHHHHHHhHH
Confidence 2322333444444444332 245677788888888762 10 000000000000
Q ss_pred -----------------------HHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHH
Q psy10738 146 -----------------------LGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRA 202 (609)
Q Consensus 146 -----------------------lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 202 (609)
...+-+..++ +....+. .........|++++... +....+
T Consensus 153 y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~---------~~~~~~~--~~~~Rv~~~ye~al~~~------p~~~~l 215 (493)
T 2uy1_A 153 FQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN---------GMKLGGR--PHESRMHFIHNYILDSF------YYAEEV 215 (493)
T ss_dssp HHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC---------TTCCCHH--HHHHHHHHHHHHHHHHT------TTCHHH
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC---------CccCcch--hhHHHHHHHHHHHHHcC------CCCHHH
Confidence 0000011111 1111110 11334556777766653 222567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 203 CGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 203 ~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
|...+..+...|+.+.|...|++|+..
T Consensus 216 W~~ya~~~~~~~~~~~ar~i~erAi~~ 242 (493)
T 2uy1_A 216 YFFYSEYLIGIGQKEKAKKVVERGIEM 242 (493)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 888888999999999999999999987
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.84 E-value=0.0003 Score=61.24 Aligned_cols=123 Identities=11% Similarity=0.003 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc----
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD---RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM---- 314 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~---- 314 (609)
++..-...++..|.|+.|+-....++.+.....+ +...+.++..+|.+++..|+|..|..+|++|+...+.+.
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s 101 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSK 101 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3444445555666666666666666655544322 445556666666666666666666666666665554321
Q ss_pred ---------------chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 315 ---------------DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 315 ---------------~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
+...+.++.+.+|.||.++|++++|+..+ +.+........+.+.||++|.
T Consensus 102 ~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~L-------e~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 102 VRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAIL-------DGIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp ---------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHH-------HTSCGGGCCHHHHHHHHHHCC
T ss_pred ccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHH-------hcCCchhcCHHHHHHHHHHhc
Confidence 11224578899999999999999987764 344445566777888888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=97.83 E-value=0.002 Score=68.37 Aligned_cols=19 Identities=11% Similarity=-0.083 Sum_probs=14.8
Q ss_pred cCChHHHHHHHHHHHHhCC
Q psy10738 35 AGDCRAGVAFFQAAIQAGT 53 (609)
Q Consensus 35 ~g~~~~A~~~~~~al~~~~ 53 (609)
.|+.+.+..+|++|+....
T Consensus 102 ~~~~~~vR~iy~rAL~~P~ 120 (493)
T 2uy1_A 102 QTRIEKIRNGYMRALQTPM 120 (493)
T ss_dssp HHHHHHHHHHHHHHHTSCC
T ss_pred hHHHHHHHHHHHHHHhChh
Confidence 3567889999999998543
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.82 E-value=0.00044 Score=60.16 Aligned_cols=125 Identities=16% Similarity=0.101 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC---hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD---KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD- 275 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~- 275 (609)
.+++..-...++..|.|+.|+-....++.+.....+ +.....++..+|.+++..|+|..|..+|++++...+....
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~ 99 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKT 99 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcC
Confidence 345666677788899999999999999988876554 5677889999999999999999999999999988764311
Q ss_pred ------------------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHH
Q psy10738 276 ------------------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHA 331 (609)
Q Consensus 276 ------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~ 331 (609)
...+..+.+.++.||.++|++++|+..++ .+........+...||++|.
T Consensus 100 ~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le-------~Ip~k~Rt~kvnm~LakLy~ 166 (167)
T 3ffl_A 100 SKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILD-------GIPSRQRTPKINMLLANLYK 166 (167)
T ss_dssp -----------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHH-------TSCGGGCCHHHHHHHHHHCC
T ss_pred CCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHh-------cCCchhcCHHHHHHHHHHhc
Confidence 11234788999999999999999988765 34444555667778887763
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.75 E-value=0.0058 Score=63.67 Aligned_cols=219 Identities=11% Similarity=0.015 Sum_probs=139.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH-
Q psy10738 74 GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA- 152 (609)
Q Consensus 74 g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~- 152 (609)
|+++.|++-+....+.++...|......+...+..++...|+++...+++.- +.+..+..............-|..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~---Lskkr~qlk~ai~~~V~~~~~~l~~ 106 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTL---LSKKHGQLKLSIQYMIQKVMEYLKS 106 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHH---HHTTTTTSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHhc
Confidence 5667777666554445555566666677777777777778887766555432 111122111111111111111111
Q ss_pred cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC-----hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q psy10738 153 KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND-----TAAQGRACGNLGNTYYLLGNFKQAIYYHQERL 227 (609)
Q Consensus 153 ~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 227 (609)
... .+. ......+........ ....++....|+.+|...|++.+|...+....
T Consensus 107 ~~~--------------------~d~--~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~ 164 (445)
T 4b4t_P 107 SKS--------------------LDL--NTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQ 164 (445)
T ss_dssp HCT--------------------THH--HHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred CCc--------------------hhH--HHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 111 111 111111111111111 12356677889999999999999999998876
Q ss_pred HHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc-CCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Q psy10738 228 KIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL-GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306 (609)
Q Consensus 228 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 306 (609)
.-.....+.......+.....+|...+++..|..++.++....... ..+......+...|.++...++|.+|..+|..+
T Consensus 165 ~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 165 VETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 5544455666777888999999999999999999999986544433 455567778888999999999999999999999
Q ss_pred HHHHHHhcchh
Q psy10738 307 LIIAQQLMDRV 317 (609)
Q Consensus 307 l~~~~~~~~~~ 317 (609)
.......++..
T Consensus 245 ~~~~~~~~d~~ 255 (445)
T 4b4t_P 245 YQTDAIKSDEA 255 (445)
T ss_dssp HHHHHHHSCHH
T ss_pred HhcccccCCHH
Confidence 98776655543
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0038 Score=65.03 Aligned_cols=224 Identities=11% Similarity=-0.040 Sum_probs=146.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh
Q psy10738 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI 193 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~ 193 (609)
|+++.|++-+....+..+...|......++..+..++...|+ ++...+++.- +.+..
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~--------------------~~~l~e~i~~---Lskkr 86 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNK--------------------WDDLNEQLTL---LSKKH 86 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSC--------------------HHHHHHHHHH---HHTTT
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhcc--------------------HHHHHHHHHH---HHHHh
Confidence 567888877655555555556666677888888899999999 8776665432 22222
Q ss_pred CChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhC-----ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 194 NDTAAQGRACGNLGNTYY-LLGNFKQAIYYHQERLKIAREFG-----DKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267 (609)
Q Consensus 194 ~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 267 (609)
+..........+...-|. .....+.. .....+....... .....++....|+.+|...|++.+|...+....
T Consensus 87 ~qlk~ai~~~V~~~~~~l~~~~~~d~~--~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~ 164 (445)
T 4b4t_P 87 GQLKLSIQYMIQKVMEYLKSSKSLDLN--TRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQ 164 (445)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCTTHHH--HHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHhcCCchhHH--HHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 222211111111111111 12221111 1111111111111 112345677889999999999999999998876
Q ss_pred HHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHH
Q psy10738 268 VLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ-QLMDRVGEGRACWSLGNAHAARGNHEKALYFATKH 346 (609)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~a 346 (609)
.-.....+.......+.....+|...+++.+|..++.++..... ....+......+...|.++...++|.+|..+|.++
T Consensus 165 ~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 165 VETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 54444456666788888899999999999999999999865443 33445667788889999999999999999999999
Q ss_pred HHHHHHcCCCchHHHH
Q psy10738 347 LEISKQLGDPLGQVTA 362 (609)
Q Consensus 347 l~l~~~~~~~~~~~~a 362 (609)
.+.....+++.....+
T Consensus 245 ~~~~~~~~d~~~~~~~ 260 (445)
T 4b4t_P 245 YQTDAIKSDEAKWKPV 260 (445)
T ss_dssp HHHHHHHSCHHHHHHH
T ss_pred HhcccccCCHHHHHHH
Confidence 9988777765433333
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00027 Score=56.18 Aligned_cols=65 Identities=14% Similarity=0.125 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHhCC---HHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGD---YQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 62 ~~~~lg~~~~~~g~---~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
++..+|.+++..++ .++|..++++++.+ ++....+++.+|..++..|+|++|+.+++++++..+.
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~------dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQL------EPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHH------CcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 55666666655544 56666777777666 6666666667777777777777777777666655443
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.52 E-value=0.00065 Score=58.73 Aligned_cols=87 Identities=15% Similarity=0.049 Sum_probs=71.2
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG---DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
....+...|.+.++.++.+. .+.+.+|+++...+ ++++++.+++..++.. .+.....+++++|..|+++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~----~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~kl 84 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSK----STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYRL 84 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCH----HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHccCCCcH----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHHc
Confidence 34567777888887777553 47899999999988 6779999999988861 1225688999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~ 131 (609)
|+|++|..++++++++.|
T Consensus 85 ~~Y~~A~~y~~~lL~ieP 102 (152)
T 1pc2_A 85 KEYEKALKYVRGLLQTEP 102 (152)
T ss_dssp SCHHHHHHHHHHHHHHCT
T ss_pred cCHHHHHHHHHHHHhcCC
Confidence 999999999999999877
|
| >2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.51 E-value=4.3e-05 Score=46.39 Aligned_cols=23 Identities=48% Similarity=0.530 Sum_probs=20.6
Q ss_pred cchHHHHHhhhccCCCcccccCc
Q psy10738 443 EESFFELLSRFQSERMDDQRCSL 465 (609)
Q Consensus 443 ~~~f~~ll~~~q~~rmddqr~~~ 465 (609)
-|+||+||++.||.|-||||--|
T Consensus 2 ~e~~~EllsraQs~radDQRGLL 24 (40)
T 2xns_C 2 IEGLVELLNRVQSSGAHDQRGLL 24 (40)
T ss_dssp CCHHHHHHHHHTTCSCCSCSSSC
T ss_pred HHHHHHHHHHHHhcccccccccc
Confidence 48999999999999999999544
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.41 E-value=0.00058 Score=54.18 Aligned_cols=61 Identities=18% Similarity=0.095 Sum_probs=53.4
Q ss_pred HHHHHHHHHhcCC---hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 25 LALEGERLCKAGD---CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~---~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+...|..++..++ .++|..+++++++.+|+++. +++.+|..++..|+|++|+.+++++++.
T Consensus 9 ~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r----A~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 9 LAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA----ALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp HHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 4445777776665 79999999999999999855 8899999999999999999999999886
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00095 Score=64.02 Aligned_cols=88 Identities=15% Similarity=0.112 Sum_probs=77.6
Q ss_pred hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh-----CCHHHHHHHHHHHHHHHHHcCChhhH-HHHHHHHHHHHH
Q psy10738 38 CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL-----GDYQKAMQYHKQDLTLARNMEDKLGE-AKSSGNLGNTLK 111 (609)
Q Consensus 38 ~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~-----g~~~~A~~~~~~al~~~~~~~d~~~~-~~a~~~lg~~~~ 111 (609)
...|...+++|++++|.... +.+|..+|.+|... |+.++|..+|++|+++ .+.. ..+++..|..+.
T Consensus 179 l~~A~a~lerAleLDP~~~~--GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~L------nP~~~id~~v~YA~~l~ 250 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQE--GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRY------CSAHDPDHHITYADALC 250 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHH--HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHH------CCTTCSHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccc--CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHh------CCCCCchHHHHHHHHHH
Confidence 57899999999999998443 66899999999995 9999999999999999 7754 889999999998
Q ss_pred H-cCCHHHHHHHHHHHHHHHHHc
Q psy10738 112 V-MGKYDEAMVCCKRHLEISRQL 133 (609)
Q Consensus 112 ~-~g~~~~A~~~~~~al~l~~~~ 133 (609)
. .|++++|..++++++...+..
T Consensus 251 ~~~gd~~~a~~~L~kAL~a~p~~ 273 (301)
T 3u64_A 251 IPLNNRAGFDEALDRALAIDPES 273 (301)
T ss_dssp TTTTCHHHHHHHHHHHHHCCGGG
T ss_pred HhcCCHHHHHHHHHHHHcCCCCC
Confidence 8 499999999999999977753
|
| >2xns_C RGS14, regulator of G-protein signaling 14; hydrolase-peptide complex, ADP-ribosylation, arginine finger binding, lipoprotein, nucleotide-binding; HET: GDP SRT; 3.41A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.00016 Score=43.90 Aligned_cols=19 Identities=26% Similarity=0.515 Sum_probs=10.2
Q ss_pred chHHHHHHhhhcccchhhh
Q psy10738 503 DDLLDMIVGLQSKRMDEQR 521 (609)
Q Consensus 503 ~~~~~~l~~~Q~~R~~~qr 521 (609)
|+||+||.+.|++|-||||
T Consensus 3 e~~~EllsraQs~radDQR 21 (40)
T 2xns_C 3 EGLVELLNRVQSSGAHDQR 21 (40)
T ss_dssp CHHHHHHHHHTTCSCCSCS
T ss_pred HHHHHHHHHHHhccccccc
Confidence 4555555555555555555
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=97.05 E-value=0.013 Score=62.01 Aligned_cols=162 Identities=12% Similarity=0.003 Sum_probs=116.4
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHHHHHhC---------CHHHHHHHHHHHHHHHHHcCChhh
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTD-DLRTLSAIYSQLGNAYFYLG---------DYQKAMQYHKQDLTLARNMEDKLG 98 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~a~~~~~lg~~~~~~g---------~~~~A~~~~~~al~~~~~~~d~~~ 98 (609)
-..+++.|+.++|+.+|++..+.+-. + ...|..+-.++...+ ..++|...|++.... +-.|
T Consensus 33 id~c~k~G~~~~A~~lf~~M~~~Gv~pd----~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~----G~~P- 103 (501)
T 4g26_A 33 LDMCSKKGDVLEALRLYDEARRNGVQLS----QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVD----KVVP- 103 (501)
T ss_dssp HHHTTTSCCHHHHHHHHHHHHHHTCCCC----HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHT----TCCC-
T ss_pred HHHHHhCCCHHHHHHHHHHHHHcCCCCC----HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHh----CCCC-
Confidence 35678999999999999999886421 2 224555555554433 367788877765442 2222
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
...+|..+-..|...|++++|...+++.... +-. ....+|..+-..|...|+ .++
T Consensus 104 d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~----g~~-Pd~~tyn~lI~~~~~~g~--------------------~~~ 158 (501)
T 4g26_A 104 NEATFTNGARLAVAKDDPEMAFDMVKQMKAF----GIQ-PRLRSYGPALFGFCRKGD--------------------ADK 158 (501)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHTTC--------------------HHH
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCC-CccceehHHHHHHHHCCC--------------------HHH
Confidence 3567888889999999999999999876542 211 234578888888999999 999
Q ss_pred HHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 179 AIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 179 A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
|.+.+++..+. +-.+ ...+|..+-..|...|+.++|.+++++..+.
T Consensus 159 A~~l~~~M~~~----G~~P-d~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 159 AYEVDAHMVES----EVVP-EEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp HHHHHHHHHHT----TCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc----CCCC-CHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999876542 2222 2357888889999999999999999886543
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.97 E-value=0.0012 Score=57.03 Aligned_cols=88 Identities=16% Similarity=0.075 Sum_probs=67.5
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLG---NFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
...+.+.|.+.+.. + +....+.+++|+++...+ +.++++..+++.++.. .+.....+++++|..|++
T Consensus 14 l~~~~~~y~~e~~~----~--~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~----~p~~~rd~lY~LAv~~~k 83 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA----G--SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG----SKEEQRDYVFYLAVGNYR 83 (152)
T ss_dssp HHHHHHHHHHHHHT----T--CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS----CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcc----C--CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC----CccchHHHHHHHHHHHHH
Confidence 55566666655432 1 134568899999999988 6679999999988854 122345599999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHHc
Q psy10738 253 LGEYQAASEHYKRTLVLAQDL 273 (609)
Q Consensus 253 ~g~~~~A~~~~~~al~~~~~~ 273 (609)
+|+|++|..+++.++++.|..
T Consensus 84 l~~Y~~A~~y~~~lL~ieP~n 104 (152)
T 1pc2_A 84 LKEYEKALKYVRGLLQTEPQN 104 (152)
T ss_dssp TSCHHHHHHHHHHHHHHCTTC
T ss_pred ccCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999988753
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.017 Score=61.24 Aligned_cols=168 Identities=13% Similarity=-0.010 Sum_probs=117.2
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG---------KYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g---------~~~~A~~~~~~al~l~~~ 132 (609)
++..+-..+.+.|++++|++.|++.... +-.+ ...+|..+-.++...+ ..++|...|++...
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~----Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~---- 98 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRN----GVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIV---- 98 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHH----TCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHH----
Confidence 3455557788999999999999988764 2222 2334555544554433 36777777776543
Q ss_pred cCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 133 LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL 212 (609)
Q Consensus 133 ~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~ 212 (609)
.+-. ....+|..+-..|...|+ +++|...+++.... +-.+ ...+|..+-..|..
T Consensus 99 ~G~~-Pd~~tyn~lI~~~~~~g~--------------------~~~A~~l~~~M~~~----g~~P-d~~tyn~lI~~~~~ 152 (501)
T 4g26_A 99 DKVV-PNEATFTNGARLAVAKDD--------------------PEMAFDMVKQMKAF----GIQP-RLRSYGPALFGFCR 152 (501)
T ss_dssp TTCC-CCHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHHT----TCCC-CHHHHHHHHHHHHH
T ss_pred hCCC-CCHHHHHHHHHHHHhcCC--------------------HHHHHHHHHHHHHc----CCCC-ccceehHHHHHHHH
Confidence 2211 234578888999999999 99999999876432 2222 24578888889999
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVL 269 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 269 (609)
.|+.++|.+.+++..+. +-. .....|..+-..|...|+.++|.+++++..+.
T Consensus 153 ~g~~~~A~~l~~~M~~~----G~~-Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~ 204 (501)
T 4g26_A 153 KGDADKAYEVDAHMVES----EVV-PEEPELAALLKVSMDTKNADKVYKTLQRLRDL 204 (501)
T ss_dssp TTCHHHHHHHHHHHHHT----TCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhc----CCC-CCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHh
Confidence 99999999999887542 111 11237888999999999999999999886543
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0088 Score=62.19 Aligned_cols=239 Identities=12% Similarity=0.008 Sum_probs=110.6
Q ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHcCC---cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH---
Q psy10738 108 NTLKVMGKYDEAMVCCKRHL--EISRQLND---KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA--- 179 (609)
Q Consensus 108 ~~~~~~g~~~~A~~~~~~al--~l~~~~~d---~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A--- 179 (609)
..+...+++++|..+....+ +.....+. ....+.+|+..+.++...|+ ....
T Consensus 144 i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~--------------------~~~~~~~ 203 (523)
T 4b4t_S 144 LFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLAR--------------------SSEEINS 203 (523)
T ss_dssp -------------------------------------------------------------------------------C
T ss_pred HHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcc--------------------ccccccc
Confidence 34556788999988887665 22222211 12456778888888877776 3332
Q ss_pred -------HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHHH
Q psy10738 180 -------IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHI 251 (609)
Q Consensus 180 -------~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~la~~~~ 251 (609)
...+..++..+.-..|....+..++.+-..|...+.|+.|..+..++. .+.. ......++.++.+|.++.
T Consensus 204 ~~~~~~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~a 281 (523)
T 4b4t_S 204 DNQNIILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNGEVDSASDFISKLE--YPHTDVSSSLEARYFFYLSKINA 281 (523)
T ss_dssp HHHHHHHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHHH
Confidence 122222222222235566778889999999999999999999998874 3332 334455778899999999
Q ss_pred HhCCHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHH
Q psy10738 252 FLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAH 330 (609)
Q Consensus 252 ~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~ 330 (609)
.+++|.+|.+++..|+..++.... ......++-.+.-+-..+|+...-.-+-...+ ......|..|+.++
T Consensus 282 ~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~r~lf~q~~l---------~~~L~pY~~Lv~Av 352 (523)
T 4b4t_S 282 IQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPELSFFHQSNM---------QKSLLPYYHLTKAV 352 (523)
T ss_dssp HTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCCHHHHTTTSC---------HHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCChHHhhchhH---------HHHHHHHHHHHHHH
Confidence 999999999999999887654322 22233343334444444677654221111000 01123456666664
Q ss_pred HHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHH-HHHHHcCCCCC
Q psy10738 331 AARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT-DLRKALGMSTN 378 (609)
Q Consensus 331 ~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la-~l~~~~g~~~~ 378 (609)
+.|+..+=...+++.-..+..-|......+...++- .....+...+.
T Consensus 353 -r~GdL~~F~~~L~~h~~~F~~Dgty~LI~rLr~~vir~~irkis~~Ys 400 (523)
T 4b4t_S 353 -KLGDLKKFTSTITKYKQLLLKDDTYQLCVRLRSNVIKTGIRIISLTYK 400 (523)
T ss_dssp -HHTCHHHHHHHHHHTHHHHHHTTCTHHHHHHHHHHHHHHHHHSCCCSS
T ss_pred -HcCCHHHHHHHHHHhcceeccCChhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 557777766666666666666665544333333222 23344444443
|
| >4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.018 Score=59.80 Aligned_cols=170 Identities=10% Similarity=0.075 Sum_probs=78.5
Q ss_pred HHHHHHhCCHHHHHHHHHHHH--HHHHHc---CChhhHHHHHHHHHHHHHHcCCHHHHHH----------HHHHHHHHHH
Q psy10738 67 GNAYFYLGDYQKAMQYHKQDL--TLARNM---EDKLGEAKSSGNLGNTLKVMGKYDEAMV----------CCKRHLEISR 131 (609)
Q Consensus 67 g~~~~~~g~~~~A~~~~~~al--~~~~~~---~d~~~~~~a~~~lg~~~~~~g~~~~A~~----------~~~~al~l~~ 131 (609)
-..++..+++++|..+....+ ...... .-+...+++|+..+.++...|+...... .+..++..+.
T Consensus 143 ~i~L~d~k~~~~~~~~~~~~~~~~~l~~~nrrtlD~l~ak~~fY~s~~~e~~~~~~~~~~~~~~~~~ir~~Ll~~~rta~ 222 (523)
T 4b4t_S 143 QLFLWDSKELEQLVEFNRKVVIPNLLCYYNLRSLNLINAKLWFYIYLSHETLARSSEEINSDNQNIILRSTMMKFLKIAS 222 (523)
T ss_dssp ------------------------------------------------------------CHHHHHHHHTHHHHHHHHCC
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHHHhcccccccccccchhhHHHHHHHHHHHHh
Confidence 334556788999988877665 222222 1134567888888888888888765432 2222223222
Q ss_pred HcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHh-CChHHHHHHHHHHHHHH
Q psy10738 132 QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEI-NDTAAQGRACGNLGNTY 210 (609)
Q Consensus 132 ~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~-~~~~~~~~~~~~lg~~~ 210 (609)
-..|....+..++.+-..|...+. |+.|..+..++. +... ......++.++.+|.++
T Consensus 223 lr~D~~~qa~l~nllLRnYL~~~~--------------------y~qA~~lvsk~~--fP~~~~sn~q~~rY~YY~GRI~ 280 (523)
T 4b4t_S 223 LKHDNETKAMLINLILRDFLNNGE--------------------VDSASDFISKLE--YPHTDVSSSLEARYFFYLSKIN 280 (523)
T ss_dssp SCSSSCHHHHHHHHHHHHHHHSSC--------------------STTHHHHHHHHC--SCTTTSCHHHHHHHHHHHHHHH
T ss_pred cccCcchhHHHHHHHHHHHHccCc--------------------HHHHHHHHhcCc--CCcccCCHHHHHHHHHHHHHHH
Confidence 235666888899999999999999 999999888774 2221 33456688999999999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHH
Q psy10738 211 YLLGNFKQAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQA 258 (609)
Q Consensus 211 ~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~ 258 (609)
...++|.+|.+++..|+..++.... ......++-.+..+-+.+|+...
T Consensus 281 a~q~~Y~eA~~~L~~A~rkap~~~~a~gfr~~a~K~lI~V~LLlG~iP~ 329 (523)
T 4b4t_S 281 AIQLDYSTANEYIIAAIRKAPHNSKSLGFLQQSNKLHCCIQLLMGDIPE 329 (523)
T ss_dssp HHTTCHHHHHHHHHHHTSSCSCSSSCSHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHhccHHHHHHHHHHHHHhCCcchhhhhHHHHHHHHHHhHHhhcCCCCC
Confidence 9999999999999999987765332 22233344444444444677543
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0093 Score=61.84 Aligned_cols=104 Identities=16% Similarity=0.057 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHH
Q psy10738 242 ANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGR 321 (609)
Q Consensus 242 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 321 (609)
++..+|..|...|+++.|.+.|.++.......+. ....+..+..++...+++..+..++.++..+....+++.....
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~ 209 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---KIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNR 209 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHH
Confidence 4444555555555555555555554443322211 2334444455555555555555555555554444444444444
Q ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHH
Q psy10738 322 ACWSLGNAHAARGNHEKALYFATKHLE 348 (609)
Q Consensus 322 ~~~~La~~~~~~g~~~~A~~~~~~al~ 348 (609)
.....|.++...++|..|..+|-.+..
T Consensus 210 lk~~~gl~~l~~r~f~~Aa~~f~e~~~ 236 (429)
T 4b4t_R 210 YKTYYGIHCLAVRNFKEAAKLLVDSLA 236 (429)
T ss_dssp HHHHHHHGGGGTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhChHHHHHHHHHHHhc
Confidence 444445555555555555555554443
|
| >4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.019 Score=59.50 Aligned_cols=127 Identities=15% Similarity=0.113 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHH-cCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccc
Q psy10738 80 MQYHKQDLTLARN-MEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158 (609)
Q Consensus 80 ~~~~~~al~~~~~-~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~ 158 (609)
++-+...+..+.+ .........++..+|..|...|++++|.++|.++.......+ .....+..+..++...++
T Consensus 110 l~~l~~~~~~~~~~~~~e~e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~---~kid~~l~~irl~l~~~d--- 183 (429)
T 4b4t_R 110 IKELNEKIQKLEEDDEGELEQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG---AKIDVMLTIARLGFFYND--- 183 (429)
T ss_dssp HHHHHHHHHHHHHCCSCCCCCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC---SHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhcc---
Confidence 3445555554443 222334566888999999999999999999999887665333 456788888889999999
Q ss_pred cCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 159 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
+..+..++.++..+....+++..........|.++...++|..|..+|..+...
T Consensus 184 -----------------~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t 237 (429)
T 4b4t_R 184 -----------------QLYVKEKLEAVNSMIEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLAT 237 (429)
T ss_dssp -----------------HHHHHHHHHHHHHHHTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred -----------------HHHHHHHHHHHHHhhhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhcc
Confidence 999999999999888877887777777788888899999999999999887654
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=95.54 E-value=0.076 Score=44.03 Aligned_cols=87 Identities=13% Similarity=0.012 Sum_probs=65.8
Q ss_pred ChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHH---HHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc
Q psy10738 37 DCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQK---AMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113 (609)
Q Consensus 37 ~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~---A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~ 113 (609)
....+...|.+.+..++.. ..+.+.+|+++....+... ++..++..+.. +++...-.+++.+|..+++.
T Consensus 16 ~l~~~~~~y~~e~~~~~~s----~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~----~~p~~~Rd~lY~LAvg~ykl 87 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVS----KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFYLAVGNYRL 87 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCC----HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhccCCCc----HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc----CCcchHHHHHHHHHHHHHHh
Confidence 4456677777777766544 3477889999988877665 66666665443 22336778999999999999
Q ss_pred CCHHHHHHHHHHHHHHHH
Q psy10738 114 GKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 114 g~~~~A~~~~~~al~l~~ 131 (609)
|+|++|..+++..+++-|
T Consensus 88 g~Y~~A~~~~~~lL~~eP 105 (126)
T 1nzn_A 88 KEYEKALKYVRGLLQTEP 105 (126)
T ss_dssp TCHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHhCC
Confidence 999999999999998866
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.44 E-value=0.7 Score=51.62 Aligned_cols=26 Identities=27% Similarity=0.158 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 201 RACGNLGNTYYLLGNFKQAIYYHQER 226 (609)
Q Consensus 201 ~~~~~lg~~~~~~g~~~~A~~~~~~a 226 (609)
..|..+|..+...|+++.|+.+|.++
T Consensus 682 ~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 682 MKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 36777888888888888888887765
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=95.25 E-value=1.3 Score=49.32 Aligned_cols=101 Identities=10% Similarity=0.046 Sum_probs=63.1
Q ss_pred HHHHhcCChHHHHH-HHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVA-FFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 30 ~~~~~~g~~~~A~~-~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
......+++++|.. ++.. -++ .. .+..+...+...|.++.|+...+. .... ..
T Consensus 607 ~~~~~~~~~~~a~~~~l~~----i~~-~~----~~~~~~~~l~~~~~~~~a~~~~~~----------~~~~-------f~ 660 (814)
T 3mkq_A 607 QTLTLRGEIEEAIENVLPN----VEG-KD----SLTKIARFLEGQEYYEEALNISPD----------QDQK-------FE 660 (814)
T ss_dssp HHHHHTTCHHHHHHHTGGG----CCC-HH----HHHHHHHHHHHTTCHHHHHHHCCC----------HHHH-------HH
T ss_pred hHHHHhCCHHHHHHHHHhc----CCc-hH----HHHHHHHHHHhCCChHHheecCCC----------cchh-------ee
Confidence 44556788888866 4411 110 00 124555666778888887765532 1111 22
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
.....|++++|.+.++. ..+ ...+..+|..+...|+ ++.|+.+|.++-
T Consensus 661 ~~l~~~~~~~A~~~~~~-------~~~----~~~W~~la~~al~~~~--------------------~~~A~~~y~~~~ 708 (814)
T 3mkq_A 661 LALKVGQLTLARDLLTD-------ESA----EMKWRALGDASLQRFN--------------------FKLAIEAFTNAH 708 (814)
T ss_dssp HHHHHTCHHHHHHHHTT-------CCC----HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHT
T ss_pred hhhhcCCHHHHHHHHHh-------hCc----HhHHHHHHHHHHHcCC--------------------HHHHHHHHHHcc
Confidence 34667888888876532 222 2478899999999999 999999888753
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.65 E-value=0.55 Score=39.95 Aligned_cols=91 Identities=12% Similarity=0.021 Sum_probs=72.2
Q ss_pred hcCCh------HHHHHHHHHHHHhCCcc----hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 34 KAGDC------RAGVAFFQAAIQAGTDD----LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 34 ~~g~~------~~A~~~~~~al~~~~~~----~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
+.|+. +.-++.|++|+..-|.. .+.++.+|...|.. ...++.++|...|+.++.+ ....+.+|
T Consensus 25 ~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~------hKkFAKiw 97 (161)
T 4h7y_A 25 KNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARAN------CKKFAFVH 97 (161)
T ss_dssp HHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHH------CTTBHHHH
T ss_pred HcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHH------hHHHHHHH
Confidence 33888 88899999999876632 23355556666644 5668999999999999997 22238999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
...|..-..+|+...|...+.+|+.+.+
T Consensus 98 i~~AqFEiRqgnl~kARkILg~AiG~~~ 125 (161)
T 4h7y_A 98 ISFAQFELSQGNVKKSKQLLQKAVERGA 125 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcccHHHHHHHHHHHhccCC
Confidence 9999999999999999999999998654
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.47 E-value=3.8 Score=39.75 Aligned_cols=147 Identities=9% Similarity=-0.138 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC-HHHHHHHHHHHHHHHHHcCC-cHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE-YQAASEHYKRTLVLAQDLGD-RAVE 279 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~-~~~A~~~~~~al~~~~~~~~-~~~~ 279 (609)
.++.-+..+...|++..|.+...-.++...+.+.+... .....+..++..... -..=..++++++....+.+. +.+.
T Consensus 55 lL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~-~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gd 133 (312)
T 2wpv_A 55 LISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDD-ISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGD 133 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSH-HHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCC
T ss_pred HHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCC
Confidence 33344444455566666655555555555443322111 122233333332221 11235778888888887754 5566
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHH-----H-------HHHHHh--cchhhHHHHHHHHH-HHHHHcCChHHHHHHHH
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRH-----L-------IIAQQL--MDRVGEGRACWSLG-NAHAARGNHEKALYFAT 344 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~a-----l-------~~~~~~--~~~~~~~~~~~~La-~~~~~~g~~~~A~~~~~ 344 (609)
...+..+|..|...|++.+|..+|-.. . +..... +. ......+...+ ..|..+|+...|...+.
T Consensus 134 p~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~~-~~e~dlf~~RaVL~yL~l~n~~~A~~~~~ 212 (312)
T 2wpv_A 134 PYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDIE-DSTVAEFFSRLVFNYLFISNISFAHESKD 212 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCCC-HHHHHHHHHHHHHHHHHTTBHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCCC-cchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 788999999999999999999988421 1 111111 11 12233333333 34556777777777766
Q ss_pred HHHHHH
Q psy10738 345 KHLEIS 350 (609)
Q Consensus 345 ~al~l~ 350 (609)
......
T Consensus 213 ~f~~~~ 218 (312)
T 2wpv_A 213 IFLERF 218 (312)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 655443
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.46 E-value=0.28 Score=40.63 Aligned_cols=63 Identities=16% Similarity=0.187 Sum_probs=51.9
Q ss_pred HHHHHHHHHhcCChHH---HHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 25 LALEGERLCKAGDCRA---GVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~---A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
.+.-|+.+.+..+... +|.+++..+..+ ++...-.+++.+|..++++|+|++|..+++..|+.
T Consensus 38 ~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~--~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~ 103 (126)
T 1nzn_A 38 QFEYAWCLVRTRYNDDIRKGIVLLEELLPKG--SKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3344788888887766 999999988864 23344678999999999999999999999999998
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=94.27 E-value=0.82 Score=46.34 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcch------------------hHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDL------------------RTLSAIYSQLGNAYFYLGDYQKAMQY 82 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~a~~~~~lg~~~~~~g~~~~A~~~ 82 (609)
.+..+...|......|+...|...+.+|+.+..++. .....+...++..+...|++.+|+..
T Consensus 114 ~f~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~ 193 (388)
T 2ff4_A 114 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 193 (388)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence 344556667777788999999999999999743210 12234455677888899999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 83 ~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+..++.. .|..-.++..+-.++...|+..+|+..|++......
T Consensus 194 l~~~~~~------~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~ 236 (388)
T 2ff4_A 194 LEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 236 (388)
T ss_dssp HHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 9999888 777777899999999999999999999998877543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=94.25 E-value=0.48 Score=40.34 Aligned_cols=102 Identities=12% Similarity=-0.019 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHhCCH------HHHHHHHHHHHHHHHHcC--CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 242 ANSNLGNSHIFLGEY------QAASEHYKRTLVLAQDLG--DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 242 ~~~~la~~~~~~g~~------~~A~~~~~~al~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
.|..........|+. ++-++.|++|+...+... .....+..+...|.. ...++.++|...|+.++.+.+
T Consensus 15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hK-- 91 (161)
T 4h7y_A 15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAEL-KAIQEPDDARDYFQMARANCK-- 91 (161)
T ss_dssp HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCT--
T ss_pred HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhH--
Confidence 444445555555777 777788888887665432 223345556666644 566999999999999998621
Q ss_pred cchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 314 MDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 314 ~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
. . +.+|...|+...++|+..+|...+.+|+.+.
T Consensus 92 --k-F-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 92 --K-F-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp --T-B-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred --H-H-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 1 2 8899999999999999999999999999854
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.93 E-value=0.74 Score=38.82 Aligned_cols=47 Identities=17% Similarity=0.231 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTL 89 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 89 (609)
+++.+++..+...|.. .-.+++.+|..++++|+|++|..+.+..|+.
T Consensus 60 ~GI~LLe~l~~~~~~~---~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 60 LGVKILTDIYKEAESR---RRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp HHHHHHHHHHHHCCST---HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCccc---hhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 4555555555544332 1234455555555555555555555555444
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.85 E-value=1.2 Score=39.14 Aligned_cols=49 Identities=12% Similarity=0.074 Sum_probs=34.2
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
....|+++.|.+..+.. .....|..+|......|+++-|..+|.++-+.
T Consensus 15 AL~lg~l~~A~e~a~~l-----------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~ 63 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----------NDSITWERLIQEALAQGNASLAEMIYQTQHSF 63 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCH
T ss_pred HHhcCCHHHHHHHHHHh-----------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCH
Confidence 34668888877765432 12456788888888888888888888765443
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=93.80 E-value=0.7 Score=38.42 Aligned_cols=31 Identities=16% Similarity=0.049 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
-..++.+|..++++|+|++|..+.+..+++-
T Consensus 78 Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 78 RECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 4444444444444444444444444444443
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.91 E-value=0.7 Score=50.79 Aligned_cols=121 Identities=12% Similarity=0.049 Sum_probs=84.5
Q ss_pred cCC-hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHH---HhCCHHHHHHHHHHHHHHHHH----cC--C------hhh
Q psy10738 35 AGD-CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF---YLGDYQKAMQYHKQDLTLARN----ME--D------KLG 98 (609)
Q Consensus 35 ~g~-~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~---~~g~~~~A~~~~~~al~~~~~----~~--d------~~~ 98 (609)
.|. ++.|+.++++.....|.... ++..+.+.. ...+--+|+....++++.... .. + .+.
T Consensus 261 t~~~~~~a~~~le~L~~~~p~~~~-----~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~ 335 (754)
T 4gns_B 261 TPSLVDFTIDYLKGLTKKDPIHDI-----YYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSARLMNC 335 (754)
T ss_dssp CGGGHHHHHHHHHHHHHHCGGGHH-----HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhhCCchhH-----HHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccccccCc
Confidence 344 58899999999888876432 222222221 123445677777777653221 10 0 122
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHH
Q psy10738 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQE 178 (609)
Q Consensus 99 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 178 (609)
....+...+..+...|+|+-|+.+.++|+...+ ....+|+.|+.+|..+|+ |+.
T Consensus 336 ~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP------seF~tW~~La~vYi~l~d--------------------~e~ 389 (754)
T 4gns_B 336 MSDLLNIQTNFLLNRGDYELALGVSNTSTELAL------DSFESWYNLARCHIKKEE--------------------YEK 389 (754)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHTTC--------------------HHH
T ss_pred chHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc------hhhHHHHHHHHHHHHhcc--------------------HHH
Confidence 244566678888899999999999999999988 678899999999999999 999
Q ss_pred HHHHHHHH
Q psy10738 179 AIKYYEQN 186 (609)
Q Consensus 179 A~~~~~~a 186 (609)
|+-.+..+
T Consensus 390 ALLtLNSc 397 (754)
T 4gns_B 390 ALFAINSM 397 (754)
T ss_dssp HHHHHHHS
T ss_pred HHHHHhcC
Confidence 98776554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.58 E-value=7 Score=43.89 Aligned_cols=190 Identities=14% Similarity=0.057 Sum_probs=102.2
Q ss_pred HHHhcCChHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH-cCC---hhhHHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAG-TDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARN-MED---KLGEAKSSGN 105 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~-~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~d---~~~~~~a~~~ 105 (609)
-....|+.++++..+.+.+... .+++...+.+++.+|.++...++ +++.++...+.-... .++ ......+...
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~--~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGR--DTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTH--HHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3456788888888887766532 34555667788888888776663 677777766554210 011 2233446668
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
||.++.-.++ +++...+...+.- .+......+-..+|.++...|+ .++++.+
T Consensus 461 LGla~~GS~~-eev~e~L~~~L~d----d~~~~~~~AalALGli~vGTgn---------------------~~ai~~L-- 512 (963)
T 4ady_A 461 IGLAAMGSAN-IEVYEALKEVLYN----DSATSGEAAALGMGLCMLGTGK---------------------PEAIHDM-- 512 (963)
T ss_dssp HHHHSTTCCC-HHHHHHHHHHHHT----CCHHHHHHHHHHHHHHHTTCCC---------------------HHHHHHH--
T ss_pred HHHHhcCCCC-HHHHHHHHHHHhc----CCHHHHHHHHHHHhhhhcccCC---------------------HHHHHHH--
Confidence 8888777766 3455555554431 1111223466678888888887 3333222
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQ 257 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 257 (609)
+..+.+..+...... ..+|......|+.+.+....+. .....++.....+...+|..|...|+..
T Consensus 513 -L~~~~e~~~e~vrR~--aalgLGll~~g~~e~~~~li~~----L~~~~dp~vRygaa~alglAyaGTGn~~ 577 (963)
T 4ady_A 513 -FTYSQETQHGNITRG--LAVGLALINYGRQELADDLITK----MLASDESLLRYGGAFTIALAYAGTGNNS 577 (963)
T ss_dssp -HHHHHHCSCHHHHHH--HHHHHHHHTTTCGGGGHHHHHH----HHHCSCHHHHHHHHHHHHHHTTTSCCHH
T ss_pred -HHHHhccCcHHHHHH--HHHHHHhhhCCChHHHHHHHHH----HHhCCCHHHHHHHHHHHHHHhcCCCCHH
Confidence 222222222222222 2333333345665544433332 2233444444445556677777777754
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.34 E-value=3.1 Score=36.58 Aligned_cols=92 Identities=13% Similarity=0.093 Sum_probs=60.1
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
......|+++.|.+..+.. ++ ...|..+|......|+++-|..+|.++-.. ..+..+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l-----~~----~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~--------------~~L~~L 69 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL-----ND----SITWERLIQEALAQGNASLAEMIYQTQHSF--------------DKLSFL 69 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH-----CC----HHHHHHHHHHHHHTTCHHHHHHHHHHTTCH--------------HHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh-----CC----HHHHHHHHHHHHHcCChHHHHHHHHHhCCH--------------HHHHHH
Confidence 3457889999999987764 22 337999999999999999999999876544 233455
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 110 LKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
|...|+.+.-. +..+++...++ +.....++...|+
T Consensus 70 y~~tg~~e~L~----kla~iA~~~g~-------~n~af~~~l~lGd 104 (177)
T 3mkq_B 70 YLVTGDVNKLS----KMQNIAQTRED-------FGSMLLNTFYNNS 104 (177)
T ss_dssp HHHHTCHHHHH----HHHHHHHHTTC-------HHHHHHHHHHHTC
T ss_pred HHHhCCHHHHH----HHHHHHHHCcc-------HHHHHHHHHHcCC
Confidence 56666664433 23333332222 2233445667788
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=91.16 E-value=11 Score=36.37 Aligned_cols=105 Identities=7% Similarity=-0.100 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
...++.-+..+...|++..|.+...-.++...+.+.+.. ......+..++..... + -..=
T Consensus 53 idlL~~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~-~~~~~rl~~l~~~~p~-----------~--------~~~r 112 (312)
T 2wpv_A 53 IELISQGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVD-DISVARLVRLIAELDP-----------S--------EPNL 112 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCS-HHHHHHHHHHHTTCCT-----------T--------CTTH
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCC-----------C--------CchH
Confidence 333444445555667777777776666666665544432 2233344444444332 0 0112
Q ss_pred HHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 180 IKYYEQNLALMKEIND-TAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~-~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
..+..++++...+.++ +......+..+|..|+..|++.+|..+|-
T Consensus 113 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 113 KDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp HHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 4556666766666543 33445688889999999998888887774
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.60 E-value=2.4 Score=46.62 Aligned_cols=84 Identities=17% Similarity=0.196 Sum_probs=66.0
Q ss_pred ChHHHHHHHHHHHHh--------CCcch------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 37 DCRAGVAFFQAAIQA--------GTDDL------RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 37 ~~~~A~~~~~~al~~--------~~~~~------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
+--+|+.++.++++. .+.+. .....++...+..+...|+|+-|+++.++|+.. .|.....
T Consensus 300 ~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~------aPseF~t 373 (754)
T 4gns_B 300 KELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL------ALDSFES 373 (754)
T ss_dssp GHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CSSCHHH
T ss_pred hhHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc------CchhhHH
Confidence 344678888877752 22221 112346677788888999999999999999999 8889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRH 126 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~a 126 (609)
|+.|+.+|..+|+|+.|+-.++.+
T Consensus 374 W~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 374 WYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccHHHHHHHHhcC
Confidence 999999999999999999877644
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.23 E-value=10 Score=44.25 Aligned_cols=206 Identities=10% Similarity=-0.000 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHH-----------------HHhCChHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM-----------------KEINDTAAQGRACG 204 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-----------------~~~~~~~~~~~~~~ 204 (609)
..+.+|.++...|+ +++|..+|+++-... ............|.
T Consensus 844 ~~yl~g~~~L~~ge--------------------~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~ 903 (1139)
T 4fhn_B 844 AVYLKALIYLKSKE--------------------AVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYL 903 (1139)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHH
T ss_pred HHHHHHHHHHhcCC--------------------HHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHH
Confidence 34889999999999 999999998863211 00011111235677
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284 (609)
Q Consensus 205 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 284 (609)
.+..++...|.++.++++.+.|++.... .+.......|.++=..+...|+|++|...+... +.... ...++.
T Consensus 904 hv~~LFe~~~~~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~----pd~~~---r~~cLr 975 (1139)
T 4fhn_B 904 HLSKKLFEESAYIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALMVL----STTPL---KKSCLL 975 (1139)
T ss_dssp HHHHHHHHTSCCHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHH----HHSSS---CHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhC----CCHHH---HHHHHH
Confidence 8888999999999999999999876432 333344457888888999999999997666322 22111 122333
Q ss_pred HHHHHHHHhCCH------------HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHH-HHHHHHHHHHHHH
Q psy10738 285 SLGNTYTLLRDY------------PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK-ALYFATKHLEISK 351 (609)
Q Consensus 285 ~la~~~~~~g~~------------~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~-A~~~~~~al~l~~ 351 (609)
.|-......|.. ++-...+..- ++...+.......|..|--.+...||+.+ |...|+.+..+..
T Consensus 976 ~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~k---Ar~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~RL~~ 1052 (1139)
T 4fhn_B 976 DFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERK---AFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLSRYIS 1052 (1139)
T ss_dssp HHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHH---HHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHH---HHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHHHhhh
Confidence 333333444433 3332222211 11111111112245555666777888875 4556777777655
Q ss_pred HcCCC-----chHHHHHHHHHHHHHHcCCCCCC
Q psy10738 352 QLGDP-----LGQVTAQMNVTDLRKALGMSTND 379 (609)
Q Consensus 352 ~~~~~-----~~~~~a~~~la~l~~~~g~~~~a 379 (609)
..... ....+++..+-.++.... ++.|
T Consensus 1053 ~~~~~~~~~~~~q~~~yL~~INaLslvd-~~~a 1084 (1139)
T 4fhn_B 1053 TTELIGKKERTFIIEHYLIVLNTLELLP-KEDT 1084 (1139)
T ss_dssp HHCCCCHHHHHHHHHHHHHHHHHHHHSC-SSCC
T ss_pred ccccccchhHHHHHHHHHHHHHHHhcCC-hhhC
Confidence 33221 134566677777777774 4444
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=88.58 E-value=5.9 Score=32.86 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHhCCH---HHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDY---PTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~---~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
...+.+++|+++.+..+. .+++..++..+.. ++...-..++.||..+.++|+|.+|..+.+..+++-
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~-----~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e 108 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 108 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred ChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 356778888888877654 3566666655542 133456788889999999999999999988877754
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=87.83 E-value=21 Score=34.78 Aligned_cols=90 Identities=9% Similarity=-0.052 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH--------HHHHHH---hcchhhHHHHHHHH-
Q psy10738 260 SEHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRH--------LIIAQQ---LMDRVGEGRACWSL- 326 (609)
Q Consensus 260 ~~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a--------l~~~~~---~~~~~~~~~~~~~L- 326 (609)
..+.++++....+.+ .+......+..+|..|++.+++.+|..+|--. ..+.-+ ... ......+...
T Consensus 115 ~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~-~~e~dlfiaRa 193 (336)
T 3lpz_A 115 KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE-SHTAPLYCARA 193 (336)
T ss_dssp HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC-GGGHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC-CccHHHHHHHH
Confidence 567788888887754 45566788889999999999999998887311 011111 111 1222333333
Q ss_pred HHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 327 GNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 327 a~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
...|...|+...|...+....+..
T Consensus 194 VL~yL~l~n~~~A~~~~~~f~~~l 217 (336)
T 3lpz_A 194 VLPYLLVANVRAANTAYRIFTSAL 217 (336)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHHH
Confidence 335667778887777766665544
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=87.76 E-value=13 Score=32.21 Aligned_cols=122 Identities=16% Similarity=0.175 Sum_probs=84.4
Q ss_pred HHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHH
Q psy10738 30 ERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNT 109 (609)
Q Consensus 30 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~ 109 (609)
...++-.+|+.++-+-.-.....|+ .-..++..++..|+|..|+-.+.. .+.+.+.+.-+.|
T Consensus 10 ~Ks~kY~dYdt~~fLsa~L~~~~~e-------Y~lL~~I~LyyngEY~R~Lf~L~~-----------lNT~Ts~YYk~LC 71 (242)
T 3kae_A 10 CKSIRYRDYETAIFLAACLLPCKPE-------YRMLMSIVLYLNGEYTRALFHLHK-----------LNTCTSKYYESLC 71 (242)
T ss_dssp HHHHHTTCHHHHHHHHHHHC----C-------THHHHHHHHHHTTCHHHHHHHHHT-----------CCBHHHHHHHHHH
T ss_pred HHHhhcccccHHHHHHHHHccCChH-------HHhhhhhhhhhcchHhHHHHHHHh-----------cchHHHHHHHHHH
Confidence 3445667888776543333333332 235677888899999988765532 3345677788899
Q ss_pred HHHcCCHHHHHHHHHHHHH--HHH----------HcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 110 LKVMGKYDEAMVCCKRHLE--ISR----------QLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 110 ~~~~g~~~~A~~~~~~al~--l~~----------~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
|....+|..|+.+++..++ +.+ -.-++...-..+..+|.+....|+ -+
T Consensus 72 y~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~--------------------r~ 131 (242)
T 3kae_A 72 YKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGY--------------------RE 131 (242)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTC--------------------HH
T ss_pred HHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcC--------------------HH
Confidence 9999999999999998872 211 112333445677889999999999 99
Q ss_pred HHHHHHHHHHHH
Q psy10738 178 EAIKYYEQNLAL 189 (609)
Q Consensus 178 ~A~~~~~~al~~ 189 (609)
+|+.++......
T Consensus 132 EaI~y~~~Sf~~ 143 (242)
T 3kae_A 132 EGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHH
T ss_pred HhhhHhhhhcCC
Confidence 999999887654
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.49 E-value=5.6 Score=33.45 Aligned_cols=67 Identities=9% Similarity=-0.022 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHHhCCHH---HHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYP---TAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS 350 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~---~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~ 350 (609)
...+.+++|+++....+.. +++..++..+.. .+...-..++.||..+.++|+|.+|..+.+..+++-
T Consensus 38 s~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~-----~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e 107 (144)
T 1y8m_A 38 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 107 (144)
T ss_dssp CHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHH-----CCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC
T ss_pred cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhc-----CccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 4667888888888877654 566666665542 223456688999999999999999999999888754
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=87.26 E-value=12 Score=37.54 Aligned_cols=73 Identities=12% Similarity=-0.109 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHcCCCchH
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS-KQLGDPLGQ 359 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~-~~~~~~~~~ 359 (609)
.+...++..+...|++.+|+..+..++...+- .-.++..+..++...|+..+|+..|++..... +++|..+..
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~------~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPY------REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 35566788889999999999999888765432 23378888899999999999999999988754 566765543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.25 E-value=1.4 Score=46.03 Aligned_cols=81 Identities=15% Similarity=0.113 Sum_probs=66.7
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
.++..||.+..+...+..|..+|.+|..+ .|..+..++.||.+....|+.-+|+-+|.+++.... ...
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~------~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~------Pf~ 220 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQL------VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKF------PFP 220 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSB------CCH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHh------CCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCC------CCh
Confidence 46778999999999999999999999999 888889999999999999999999999999885432 233
Q ss_pred HHHHHHHHHHHHc
Q psy10738 141 RALYNLGNVYHAK 153 (609)
Q Consensus 141 ~~~~~lg~~~~~~ 153 (609)
.+..++..++...
T Consensus 221 ~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 221 AASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHH
Confidence 4556666666543
|
| >1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=87.09 E-value=1.5 Score=45.91 Aligned_cols=61 Identities=20% Similarity=0.170 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Q psy10738 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307 (609)
Q Consensus 241 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 307 (609)
.++..||.+......+..|..+|.+|..+.|.. +..+..||.++...|+.-+|+-+|.+++
T Consensus 153 r~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~------G~~~nqLavla~~~~~~l~a~y~y~rsl 213 (497)
T 1ya0_A 153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN------GQPYNQLAILASSKGDHLTTIFYYCRSI 213 (497)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------SHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHHHHHHHhCCCC------CchHHHHHHHHhcccccHHHHHHHHHHH
Confidence 344455555555555555555555555555553 4455555555555555555555555554
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=22 Score=35.74 Aligned_cols=131 Identities=9% Similarity=-0.093 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-----------CcHHHHHHHHHHHH
Q psy10738 220 IYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLG-----------DRAVEAQACYSLGN 288 (609)
Q Consensus 220 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~la~ 288 (609)
+..|+..+.-....-++...+.. +..+.....+.++|.+++++......... .......+...++.
T Consensus 59 ~~ly~~fi~~f~~kin~L~lv~~---~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~ 135 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQLSVVKY---LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIAR 135 (393)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHT---THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHH
Confidence 45555555555443333322211 23344566788899988877644332210 11223456667899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhcch--hhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDR--VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 289 ~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
.|...|+.++|..+++++-......++. ...+..|...+..|...+++..+..++-.++......
T Consensus 136 ~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~~~ 202 (393)
T 4b4t_O 136 TYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLEPS 202 (393)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTS
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999888877653 3566777788999999999999888888888776543
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=85.99 E-value=15 Score=42.87 Aligned_cols=103 Identities=11% Similarity=-0.024 Sum_probs=73.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----------------HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCC
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEI-----------------SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQ 163 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l-----------------~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~ 163 (609)
...+.+|.++...|++++|..+|+++-.- .............|..+..++...|.
T Consensus 843 ~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~-------- 914 (1139)
T 4fhn_B 843 IAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESA-------- 914 (1139)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSC--------
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCC--------
Confidence 34588999999999999999999876321 11111111234456777888888888
Q ss_pred CCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 164 DPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQ 224 (609)
Q Consensus 164 ~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~ 224 (609)
++.++++.+.|++.... ++.......|.++=..+..+|+|++|...+.
T Consensus 915 ------------~~~vi~fa~lAi~~~~~-~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 915 ------------YIDALEFSLLADASKET-DDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp ------------CHHHHHHHHHHHHHCCS-CCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred ------------HHHHHHHHHHHHHhccC-CChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 89999999988875322 3333344578888888999999999976663
|
| >3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=85.83 E-value=7.6 Score=33.61 Aligned_cols=97 Identities=20% Similarity=0.138 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
.-..++.+++..|.|..|+-.+.. . ..+.+.+.-+.||....+ |.+|+.
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~~-------l----NT~Ts~YYk~LCy~klKd--------------------YkkA~~ 83 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLHK-------L----NTCTSKYYESLCYKKKKD--------------------YKKAIK 83 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHT-------C----CBHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred HHhhhhhhhhhcchHhHHHHHHHh-------c----chHHHHHHHHHHHHHHHH--------------------HHHHHH
Confidence 345678888999999988776542 1 234566777889999999 999999
Q ss_pred HHHHHHHH--H----------HHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 182 YYEQNLAL--M----------KEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKI 229 (609)
Q Consensus 182 ~~~~al~~--~----------~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 229 (609)
.++..+.- - .-.-++...-..+..+|.++...|+.++|+.++......
T Consensus 84 ~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 84 SLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 99988721 1 011223344567888999999999999999999887654
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=85.41 E-value=4.9 Score=45.49 Aligned_cols=104 Identities=6% Similarity=-0.204 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcH
Q psy10738 198 AQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRA 277 (609)
Q Consensus 198 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 277 (609)
.....|+.+-..|.+.|+.++|...+.+..+.......+. ..+|+.+-..|.+.|+.++|.+.|++.... +-.+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd--vvTYNtLI~Glck~G~~~eA~~Lf~eM~~~----G~~P 198 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT--LDMYNAVMLGWARQGAFKELVYVLFMVKDA----GLTP 198 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC--HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCCC
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC--HhHHHHHHHHHHhCCCHHHHHHHHHHHHHc----CCCC
Confidence 3456788899999999999999999987655433221111 238889999999999999999999876432 2111
Q ss_pred HHHHHHHHHHHHHHHhCCH-HHHHHHHHHHHH
Q psy10738 278 VEAQACYSLGNTYTLLRDY-PTAIDYHLRHLI 308 (609)
Q Consensus 278 ~~~~~~~~la~~~~~~g~~-~~A~~~~~~al~ 308 (609)
...+|..+-..+.+.|+. ++|.+.+++...
T Consensus 199 -DvvTYntLI~glcK~G~~~e~A~~Ll~EM~~ 229 (1134)
T 3spa_A 199 -DLLSYAAALQCMGRQDQDAGTIERCLEQMSQ 229 (1134)
T ss_dssp -CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred -cHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 255677777788888885 788888877543
|
| >3tvt_B PINS, partner of inscuteable; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=83.09 E-value=0.24 Score=31.17 Aligned_cols=24 Identities=67% Similarity=0.960 Sum_probs=20.6
Q ss_pred CcchhhhcccccccccccCCCccC
Q psy10738 403 RYNRVRRSSMEQLDLIKLTPENKG 426 (609)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~~~~~~ 426 (609)
+--+++|++|+.+++++.||+++.
T Consensus 18 rmvrvrrqsmeqldlikitpdgkr 41 (50)
T 3tvt_B 18 RMVRVRRQDMEQLDLIKITPDGKR 41 (50)
T ss_pred eEEEeeecchhhcCeEEecCCchh
Confidence 456789999999999999999863
|
| >4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=82.75 E-value=42 Score=33.65 Aligned_cols=129 Identities=8% Similarity=0.062 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----------ChHHHHHHHHHHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG-----------DKAAERRANSNLGN 248 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----------~~~~~~~~~~~la~ 248 (609)
+..|+..+.-+...-++...+.. +..+.....+.++|++++++......... .......+...++.
T Consensus 59 ~~ly~~fi~~f~~kin~L~lv~~---~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~ 135 (393)
T 4b4t_O 59 LRLYDNFVSKFYDKINQLSVVKY---LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIAR 135 (393)
T ss_dssp HHHHHHHHHHHHHHSCSHHHHHT---THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHH---HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHH
Confidence 34555555444433333322222 23455567889999999987644332210 01223456678899
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 249 SHIFLGEYQAASEHYKRTLVLAQDLGD--RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 249 ~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
.|...|+.+.|..+++++-......++ +...+..|...+..|...+++..+..+.-.++....
T Consensus 136 ~yl~~~d~~~a~~~l~~~~~~l~~~~~~~~~v~~~~y~~~~~~~~~~~~~a~~y~~~l~~l~~~~ 200 (393)
T 4b4t_O 136 TYLLKNDLVKARDLLDDLEKTLDKKDSIPLRITNSFYSTNSQYFKFKNDFNSFYYTSLLYLSTLE 200 (393)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHHHSCCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHhcCCHHHHHHHHHHHHHhhhccCCccHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcc
Confidence 999999999999999999988887653 345677777788889999999988877777776554
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=81.51 E-value=75 Score=35.74 Aligned_cols=255 Identities=14% Similarity=0.034 Sum_probs=133.0
Q ss_pred HHHhcCChHHHHHHHHHHHHhCC---c---chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHH
Q psy10738 31 RLCKAGDCRAGVAFFQAAIQAGT---D---DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSG 104 (609)
Q Consensus 31 ~~~~~g~~~~A~~~~~~al~~~~---~---~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~ 104 (609)
-....|...+++.++...+.... + .......+-..||.+|.-.++ +++.+.+...+.- .+......+-.
T Consensus 420 Gli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS~~-eev~e~L~~~L~d----d~~~~~~~Aal 494 (963)
T 4ady_A 420 GLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGSAN-IEVYEALKEVLYN----DSATSGEAAAL 494 (963)
T ss_dssp HHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTCCC-HHHHHHHHHHHHT----CCHHHHHHHHH
T ss_pred HHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHhc----CCHHHHHHHHH
Confidence 34455555678888888886543 1 122333455688888877766 4556665555542 11112235666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHH
Q psy10738 105 NLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184 (609)
Q Consensus 105 ~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 184 (609)
.+|.++.-.|+-+-....+..+. ...+......+-..||.+ ..|+ .+.+..
T Consensus 495 ALGli~vGTgn~~ai~~LL~~~~----e~~~e~vrR~aalgLGll--~~g~--------------------~e~~~~--- 545 (963)
T 4ady_A 495 GMGLCMLGTGKPEAIHDMFTYSQ----ETQHGNITRGLAVGLALI--NYGR--------------------QELADD--- 545 (963)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHH----HCSCHHHHHHHHHHHHHH--TTTC--------------------GGGGHH---
T ss_pred HHhhhhcccCCHHHHHHHHHHHh----ccCcHHHHHHHHHHHHhh--hCCC--------------------hHHHHH---
Confidence 78888888888655444444333 222222222233344444 4555 222222
Q ss_pred HHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Q psy10738 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYK 264 (609)
Q Consensus 185 ~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 264 (609)
.++......++.....+-..+|..|...|+...-...+..+ ....+......+...+|.+ ..|+.+.+..
T Consensus 546 -li~~L~~~~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~----~~d~~d~VRraAViaLGlI--~~g~~e~v~r--- 615 (963)
T 4ady_A 546 -LITKMLASDESLLRYGGAFTIALAYAGTGNNSAVKRLLHVA----VSDSNDDVRRAAVIALGFV--LLRDYTTVPR--- 615 (963)
T ss_dssp -HHHHHHHCSCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHH----HHCSCHHHHHHHHHHHHHH--TSSSCSSHHH---
T ss_pred -HHHHHHhCCCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHh----ccCCcHHHHHHHHHHHHhh--ccCCHHHHHH---
Confidence 23333444555555566678899999999954433344443 3333333333344444443 4455433322
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCC
Q psy10738 265 RTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGN 335 (609)
Q Consensus 265 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~ 335 (609)
.+.......++.....+-..+|.+....++ .+|+..+.... .-.+..-...+...||.+.....+
T Consensus 616 -lv~~L~~~~d~~VR~gAalALGli~aGn~~-~~aid~L~~L~----~D~d~~Vrq~Ai~ALG~Ig~gtnn 680 (963)
T 4ady_A 616 -IVQLLSKSHNAHVRCGTAFALGIACAGKGL-QSAIDVLDPLT----KDPVDFVRQAAMIALSMILIQQTE 680 (963)
T ss_dssp -HTTTGGGCSCHHHHHHHHHHHHHHTSSSCC-HHHHHHHHHHH----TCSSHHHHHHHHHHHHHHSTTCCT
T ss_pred -HHHHHHhcCCHHHHHHHHHHHHHhccCCCc-HHHHHHHHHHc----cCCCHHHHHHHHHHHHHHhcCCcc
Confidence 233333445555556666677766644444 56776666543 112233333466666666555443
|
| >3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis} | Back alignment and structure |
|---|
Probab=80.01 E-value=21 Score=34.83 Aligned_cols=91 Identities=10% Similarity=-0.004 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCC
Q psy10738 279 EAQACYSLGNTYTLLR--DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g--~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~ 356 (609)
.+.++.+||.+-...- ....++..|.+|+..++..-... ...-|..+|-++.+.+++.+|+.++-+|-...+..+..
T Consensus 254 YPmALgnLgDLEe~~pt~gr~~~l~L~~~AI~sa~~yY~n~-HvYPYtylgGy~yR~~~~reAl~~WA~Aa~Vi~~YNY~ 332 (472)
T 3re2_A 254 YPMAIANLGDLEEISPTPGRPPAEELFKEAITVAKREYSDH-HIYPYTYLGGYYYRKKKYYEAIASWVDAGYVAGKYNYS 332 (472)
T ss_dssp CHHHHHHHHHHHHHSCCTTSCCHHHHHHHHHHHHHHHSTTC-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCCC
T ss_pred CchhhcchhhHHhcCCCCCCCCHHHHHHHHHHHHHHHhccC-CccchhhhhhhhhhcchHHHHHHHHHHHHHHHHHcCCC
Confidence 3455566666554322 22338889999998888753322 23356778889999999999999999999999998887
Q ss_pred chHHHHHHHHHHHH
Q psy10738 357 LGQVTAQMNVTDLR 370 (609)
Q Consensus 357 ~~~~~a~~~la~l~ 370 (609)
....+++..+-++-
T Consensus 333 reDeEIYKEf~eIA 346 (472)
T 3re2_A 333 KDDEEMYKEFHEIA 346 (472)
T ss_dssp GGGHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH
Confidence 77778777766654
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 609 | ||||
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 4e-20 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 5e-10 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 1e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 6e-09 | |
| d1hz4a_ | 366 | a.118.8.2 (A:) Transcription factor MalT domain II | 7e-09 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 5e-19 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 1e-16 | |
| d1w3ba_ | 388 | a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, | 3e-16 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 6e-18 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 5e-12 | |
| d1ya0a1 | 497 | a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T | 2e-11 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 7e-16 | |
| d1qqea_ | 290 | a.118.8.1 (A:) Vesicular transport protein sec17 { | 9e-06 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 8e-09 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 3e-04 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.003 | |
| d1xnfa_ | 259 | a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli | 0.003 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 1e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-07 | |
| d1hh8a_ | 192 | a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF- | 2e-05 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 2e-07 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 3e-04 | |
| d1tjca_ | 95 | a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subuni | 5e-04 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-07 | |
| d1fcha_ | 323 | a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting | 4e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-06 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 5e-05 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 2e-04 | |
| d1elra_ | 128 | a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9 | 3e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 3e-04 | |
| d1zbpa1 | 264 | e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V | 0.001 | |
| d2c2la1 | 201 | a.118.8.1 (A:24-224) STIP1 homology and U box-cont | 0.002 |
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 90.0 bits (221), Expect = 4e-20
Identities = 39/351 (11%), Positives = 88/351 (25%), Gaps = 23/351 (6%)
Query: 25 LALEGERLCKAGDCRAGVAFFQAAIQ-AGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYH 83
AL + G+ + A++ + S LG G+ +++
Sbjct: 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALM 74
Query: 84 KQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRAL 143
+Q +AR + S L G A ++ ++ + + +
Sbjct: 75 QQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEF 134
Query: 144 YNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRAC 203
+ + + + D E + + + + +Q L
Sbjct: 135 L-----VRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML----------- 178
Query: 204 GNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAER-RANSNLGNSHIFLGEYQAASEH 262
G+ A + + AN G+ AA+
Sbjct: 179 ---IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANW 235
Query: 263 YKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRA 322
+ + + ++ LL ++ A A+ L R
Sbjct: 236 LRH--TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRN 293
Query: 323 CWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373
L + G A L+++ + G V + + L
Sbjct: 294 LLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 59.5 bits (142), Expect = 5e-10
Identities = 31/261 (11%), Positives = 60/261 (22%), Gaps = 25/261 (9%)
Query: 54 DDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM 113
+ L + + +A + + + + + + + + L
Sbjct: 127 EQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLAR 185
Query: 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173
G D A R + + +Y
Sbjct: 186 GDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTG------------------ 227
Query: 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233
A + N N+ LLG F+ A +E + AR
Sbjct: 228 -DKAAAANWLRHTAKPEFANNHFLQ--GQWRNIARAQILLGEFEPAEIVLEELNENARSL 284
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
+ R L + G A L LA G + ++ L
Sbjct: 285 RLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344
Query: 294 RDYPTAIDYHLRHLIIAQQLM 314
T + AQ+++
Sbjct: 345 IQLNTLPELEQHR---AQRIL 362
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 58.4 bits (139), Expect = 1e-09
Identities = 21/169 (12%), Positives = 42/169 (24%), Gaps = 3/169 (1%)
Query: 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS 249
+K+I + GN +A + L+ G + A S LG
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEV 60
Query: 250 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
GE + ++T +A+ + TA + + +
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 310 AQQLMDR--VGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP 356
+ A ++A A +E+
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQ 169
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 55.7 bits (132), Expect = 6e-09
Identities = 38/307 (12%), Positives = 79/307 (25%), Gaps = 25/307 (8%)
Query: 90 ARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149
+++ + A+ + G DEA K LE S A LG V
Sbjct: 2 IKDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEV 60
Query: 150 YHAKGK------------AIGKVGQQDPGEYPEEVKVC--------LQEAIKYYEQNLAL 189
H KG+ + + ++ LQ A + E+ L
Sbjct: 61 LHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 120
Query: 190 MKEINDTAAQGRA--CGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247
+ E + + +A + +++ + + + +
Sbjct: 121 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 180
Query: 248 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHL 307
S A S+ + +L + A + + D A ++
Sbjct: 181 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTA 240
Query: 308 IIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVT 367
+ ++ A G E A + E ++ L + +
Sbjct: 241 KPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLN 298
Query: 368 DLRKALG 374
L G
Sbjct: 299 QLYWQAG 305
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Score = 55.7 bits (132), Expect = 7e-09
Identities = 18/148 (12%), Positives = 44/148 (29%), Gaps = 3/148 (2%)
Query: 12 QSGGADGGNMCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYF 71
+G + + GD A + + + + L + + A
Sbjct: 203 GNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQI 262
Query: 72 YLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131
LG+++ A ++ AR++ ++ L G+ +A L+++
Sbjct: 263 LLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLAN 322
Query: 132 QLND---KLSEGRALYNLGNVYHAKGKA 156
+ + EG A+
Sbjct: 323 RTGFISHFVIEGEAMAQQLRQLIQLNTL 350
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 87.4 bits (215), Expect = 5e-19
Identities = 60/267 (22%), Positives = 96/267 (35%), Gaps = 54/267 (20%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
G G+ + F+ A+ + L Y LGN + +A+ + + L+
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLD----AYINLGNVLKEARIFDRAVAAYLRALS 231
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
L+ N A GNL G D A+ +R +E+ D A NL N
Sbjct: 232 LSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------AYCNLAN 279
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGN 208
KG + EA Y L L D+ NL N
Sbjct: 280 ALKEKGS--------------------VAEAEDCYNTALRLCPTHADS------LNNLAN 313
Query: 209 TYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268
GN ++A+ +++ L++ EF A+SNL + G+ Q A HYK +
Sbjct: 314 IKREQGNIEEAVRLYRKALEVFPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIR 367
Query: 269 LAQDLGDRAVEAQACYSLGNTYTLLRD 295
++ A A ++GNT ++D
Sbjct: 368 ISPTF------ADAYSNMGNTLKEMQD 388
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 80.1 bits (196), Expect = 1e-16
Identities = 69/376 (18%), Positives = 118/376 (31%), Gaps = 43/376 (11%)
Query: 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88
R +AGD A + D+ + + L + +F ++ + +
Sbjct: 6 AHREYQAGDFEAAERHCMQLWRQEPDN----TGVLLLLSSIHFQCRRLDRSAHFSTLAIK 61
Query: 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148
+ A++ NLGN K G+ EA+ + L + D A
Sbjct: 62 QNPLL------AEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAG 115
Query: 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALM--KEINDTAAQGRACGNL 206
+A Q +P Y + + K I A NL
Sbjct: 116 DMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNL 175
Query: 207 GNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266
G + G AI++ ++ + + F D A NLGN + A Y R
Sbjct: 176 GCVFNAQGEIWLAIHHFEKAVTLDPNFLD------AYINLGNVLKEARIFDRAVAAYLRA 229
Query: 267 LVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSL 326
L L+ + A +L Y AID + R + + D A +L
Sbjct: 230 LSLSPN------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------AYCNL 277
Query: 327 GNAHAARGNHEKALYFATKHLEISKQLGD---PLGQVTAQMN-----VTDLRKALGMSTN 378
NA +G+ +A L + D L + + V RKAL
Sbjct: 278 ANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKAL----- 332
Query: 379 DLSPDSLQLINSYANA 394
++ P+ ++ A+
Sbjct: 333 EVFPEFAAAHSNLASV 348
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.6 bits (192), Expect = 3e-16
Identities = 51/299 (17%), Positives = 91/299 (30%), Gaps = 53/299 (17%)
Query: 70 YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129
+ + + + +E + A + NLG G+ A+ ++ + +
Sbjct: 139 SDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTL 198
Query: 130 SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
D A NLGNV A+ Y + L+L
Sbjct: 199 DPNFLD------AYINLGNVLKEARI--------------------FDRAVAAYLRALSL 232
Query: 190 MKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNS 249
GNL YY G AI ++ +++ F D A NL N+
Sbjct: 233 SPNHAV------VHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------AYCNLANA 280
Query: 250 HIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLII 309
G A + Y L A + +L N + A+ + + L +
Sbjct: 281 LKEKGSVAEAEDCYNTALR------LCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV 334
Query: 310 AQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDP---LGQVTAQMN 365
+ A +L + +G ++AL + + IS D +G +M
Sbjct: 335 FPEFAA------AHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 84.8 bits (209), Expect = 6e-18
Identities = 43/365 (11%), Positives = 87/365 (23%), Gaps = 56/365 (15%)
Query: 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS-----RQ 132
++ QY +Q L +M S + ++ L +
Sbjct: 4 QSAQYLRQAEVLKADM------TDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDK 54
Query: 133 LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA-LMK 191
++ A N + K + E + + L+ A +Y Q L L
Sbjct: 55 KVEQDLWNHAFKNQITTLQGQAK---NRANPNRSEVQANLSLFLEAASGFYTQLLQELCT 111
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
N LG + + + +LG+
Sbjct: 112 VFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--------HCLVHLGDIAR 163
Query: 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311
+ + A +Y+ L G L + D+ T I Y+ R + +
Sbjct: 164 YRNQTSQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIAVKF 217
Query: 312 QLMDRVGEGRACWSLGNA-----------HAARGNHEKALYFATKHLEISKQLGDPLGQV 360
A +L A G + F H +
Sbjct: 218 PFPA------ASTNLQKALSKALESRDEVKTKWGVSDFIKAFIKFHGHVYLSKSLEKLSP 271
Query: 361 TAQMNVTDLRKALGMSTNDLSPDSLQ-----LINSYANANQPSPGVRRYNRVRRSSMEQL 415
+ ++ L + L + + S ++ + +
Sbjct: 272 LREKLEEQFKELL--FQKAFNSQQLVHVTVINLFQLHHLRDFSNETEQHTYSQDEQLCWT 329
Query: 416 DLIKL 420
L+ L
Sbjct: 330 QLLAL 334
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.0 bits (160), Expect = 5e-12
Identities = 22/270 (8%), Positives = 52/270 (19%), Gaps = 72/270 (26%)
Query: 63 YSQLGNAYFYLGDYQKAMQ-----------YHKQDLTLARNMEDKLGEA----------- 100
+ Q Q K + L +
Sbjct: 23 KLGPAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKNRANP 82
Query: 101 ----KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
+ G Y + + + L LG + + +
Sbjct: 83 NRSEVQANLSLFLEAASGFYTQLLQELCTVFNV------DLPCRVKSSQLGIISNKQTH- 135
Query: 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216
+K + + +LG+
Sbjct: 136 -------------------TSAIVKPQSSSCSY--------ICQHCLVHLGDIARYRNQT 168
Query: 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 276
QA Y++ ++ G + L G++ +Y R++ +
Sbjct: 169 SQAESYYRHAAQLVPSNGQ------PYNQLAILASSKGDHLTTIFYYCRSIAVKFPF--- 219
Query: 277 AVEAQACYSLGNTYTLLRDYPTAIDYHLRH 306
A +L + + +
Sbjct: 220 ---PAASTNLQKALSKALESRDEVKTKWGV 246
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 64.4 bits (156), Expect = 2e-11
Identities = 26/195 (13%), Positives = 47/195 (24%), Gaps = 41/195 (21%)
Query: 55 DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT-LARNMEDKLGEAKSSGNLGNTLKVM 113
A ++ + A ++ Q L L L S LG
Sbjct: 74 GQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQ 133
Query: 114 GKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVK 173
+ Q L +LG++ + +
Sbjct: 134 THTSAIVKPQSSSCSYICQ--------HCLVHLGDIARYRNQ------------------ 167
Query: 174 VCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREF 233
+A YY L+ G+ L G+ I+Y+ + + F
Sbjct: 168 --TSQAESYYRHAAQLVPSN------GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPF 219
Query: 234 GDKAAERRANSNLGN 248
A++NL
Sbjct: 220 PA------ASTNLQK 228
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 76.2 bits (186), Expect = 7e-16
Identities = 25/244 (10%), Positives = 59/244 (24%), Gaps = 23/244 (9%)
Query: 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMV 121
+ Q Y + A + + ++ + K G A+
Sbjct: 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVD 98
Query: 122 CCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
+ ++I + LG + +AI
Sbjct: 99 SLENAIQIFTHRGQFRRGANFKFELGEILE-------------------NDLHDYAKAID 139
Query: 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD-KAAER 240
YE + A + + L G + +A + + +K + + + +
Sbjct: 140 CYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199
Query: 241 RANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL--LRDYPT 298
G + + AA+ + + D + E+ SL +
Sbjct: 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD-SRESNFLKSLIDAVNEGDSEQLSE 258
Query: 299 AIDY 302
Sbjct: 259 HCKE 262
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 290 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.3 bits (106), Expect = 9e-06
Identities = 17/142 (11%), Positives = 35/142 (24%), Gaps = 3/142 (2%)
Query: 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLR 294
++AA+ + E A + + + + G+ +
Sbjct: 34 EEAAD--LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGG 91
Query: 295 DYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNH-EKALYFATKHLEISKQL 353
+ A+D + I + LG + KA+ E Q
Sbjct: 92 NSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQD 151
Query: 354 GDPLGQVTAQMNVTDLRKALGM 375
+ DL+ G
Sbjct: 152 QSVALSNKCFIKCADLKALDGQ 173
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 54.4 bits (129), Expect = 8e-09
Identities = 36/226 (15%), Positives = 74/226 (32%), Gaps = 8/226 (3%)
Query: 42 VAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101
+A + + + + + + G Y LG A Q L + +M +
Sbjct: 19 LARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDM------PE 72
Query: 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVG 161
LG L G +D A LE+ N G +
Sbjct: 73 VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFY 132
Query: 162 QQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIY 221
Q DP + + + L E +Q ++K+ + + + + N+ Y + + +
Sbjct: 133 QDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLME 192
Query: 222 YHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTL 267
+ + +E N LG ++ LG+ +A+ +K +
Sbjct: 193 RLKADATDNTSLAEHLSE--TNFYLGKYYLSLGDLDSATALFKLAV 236
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 32/247 (12%), Positives = 69/247 (27%), Gaps = 16/247 (6%)
Query: 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG---KAIGKVGQ 162
L L+ + + + ++ L +D+ ++ LY G +Y + G A
Sbjct: 5 LAVPLQPTLQQEVILARMEQILASRALTDDERAQ--LLYERGVLYDSLGLRALAR-NDFS 61
Query: 163 QDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYY 222
Q P+ +V I + + + L TY + Y
Sbjct: 62 QALAIRPDMPEVFNYLGIYLTQAG-----NFDAAYEAFDSVLELDPTYNYAHLNRGIALY 116
Query: 223 HQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQA 282
+ R K+A++ + N + ++L E + + K L + D+
Sbjct: 117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWN 176
Query: 283 CYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYF 342
L + + LG + + G+ + A
Sbjct: 177 IV-----EFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATAL 231
Query: 343 ATKHLEI 349
+
Sbjct: 232 FKLAVAN 238
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (85), Expect = 0.003
Identities = 32/225 (14%), Positives = 58/225 (25%), Gaps = 18/225 (8%)
Query: 169 PEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228
P + + + + EQ LA +D AQ G Y LG A + L
Sbjct: 8 PLQPTLQQEVILARMEQILASRALTDDERAQ--LLYERGVLYDSLGLRALARNDFSQALA 65
Query: 229 IAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288
I + + + LG G + AA E + L L + G
Sbjct: 66 IRPDMPE------VFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGG 119
Query: 289 TYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLE 348
L+ Q L ++ L + +
Sbjct: 120 RD----------KLAQDDLLAFYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSD 169
Query: 349 ISKQLGDPLGQVTAQMNVTDLRKALGMSTNDLSPDSLQLINSYAN 393
+ + + ++ L + L D + + L +
Sbjct: 170 KEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFY 214
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Score = 37.5 bits (85), Expect = 0.003
Identities = 28/231 (12%), Positives = 50/231 (21%), Gaps = 14/231 (6%)
Query: 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134
Q+ + + + LA A+ G +G A + L I
Sbjct: 12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-M 70
Query: 135 DKLSEGRALYNLGNVYHAKGKAIGKVGQQ---DPGEYPEEVKVCLQEAIKYYEQNLALMK 191
++ +Y + + L + L+
Sbjct: 71 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLA 130
Query: 192 EINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251
D L L + Q K +E N
Sbjct: 131 FYQDDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQWGWNIVEFYLGN----IS 186
Query: 252 FLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
+ LA+ L ++ + LG Y L D +A
Sbjct: 187 EQTLMERLKADATDNTSLAEHL------SETNFYLGKYYLSLGDLDSATAL 231
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (118), Expect = 1e-07
Identities = 30/186 (16%), Positives = 50/186 (26%), Gaps = 45/186 (24%)
Query: 97 LGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKA 156
L EA S N G + A L+ + D S +N+G +Y
Sbjct: 2 LVEAISLWNEGVLAADKKDWKGA-------LDAFSAVQDPHSR--ICFNIGCMYTILKN- 51
Query: 157 IGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216
+ EA K + +++ K + G YY +
Sbjct: 52 -------------------MTEAEKAFTRSINRDKHLAVA------YFQRGMLYYQTEKY 86
Query: 217 KQAIYYHQERLKIARE----------FGDKAAERRANSNLGNSHIFLGEYQAASEHYKRT 266
AI +E L R K N+ + E++ A E
Sbjct: 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 146
Query: 267 LVLAQD 272
+ +
Sbjct: 147 TSMKSE 152
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.4 bits (117), Expect = 2e-07
Identities = 32/180 (17%), Positives = 56/180 (31%), Gaps = 27/180 (15%)
Query: 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQY 82
+ L EG D ++ A+ A + S I +G Y L + +A +
Sbjct: 6 ISLWNEGVLAADKKD-------WKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKA 58
Query: 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ---------- 132
+ + +++ G KYD A+ K L R
Sbjct: 59 FTRSINRDKHLAVA------YFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILG 112
Query: 133 LNDKLSEGRALYNLGNVYHAKG---KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189
L KL LYN+ +Y K KA ++ E + +A++ +
Sbjct: 113 LQFKLFACEVLYNIAFMYAKKEEWKKAEEQL-ALATSMKSEPRHSKIDKAMECVWKQKLY 171
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} Length = 192 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.7 bits (102), Expect = 2e-05
Identities = 25/176 (14%), Positives = 50/176 (28%), Gaps = 45/176 (25%)
Query: 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDT 196
L E +L+N G + K + A+ + + D
Sbjct: 2 LVEAISLWNEGVLAADKKD--------------------WKGALDAFSA-------VQDP 34
Query: 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256
+ R C N+G Y +L N +A + + G + +Y
Sbjct: 35 HS--RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVA------YFQRGMLYYQTEKY 86
Query: 257 QAASEHYKRTLVLAQD----------LGDRAVEAQACYSLGNTYTLLRDYPTAIDY 302
A + K L+ + L + + Y++ Y ++ A +
Sbjct: 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQ 142
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (111), Expect = 2e-07
Identities = 20/99 (20%), Positives = 34/99 (34%), Gaps = 8/99 (8%)
Query: 59 LSA-IYSQLGNAYFYLGDYQKAMQYHKQ-DLTLARNMEDKLGEAKSSGNLGNTLKVMGKY 116
L+A +LG + DY + +Q L + + L + G
Sbjct: 3 LTAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDL 62
Query: 117 DEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155
D+A++ K+ LE+ RA NL + K
Sbjct: 63 DKALLLTKKLLEL------DPEHQRANGNLKYFEYIMAK 95
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.3 bits (88), Expect = 3e-04
Identities = 12/93 (12%), Positives = 26/93 (27%), Gaps = 7/93 (7%)
Query: 202 ACGNLGNTYYLLGNFKQAI-YYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260
LG Y ++ + Q ++ + L + G+ A
Sbjct: 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKAL 66
Query: 261 EHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
K+ L L + +A +L ++
Sbjct: 67 LLTKKLLELDPE------HQRANGNLKYFEYIM 93
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.5 bits (86), Expect = 5e-04
Identities = 14/71 (19%), Positives = 25/71 (35%), Gaps = 1/71 (1%)
Query: 280 AQACYSLGNTYTLLRDYPTAID-YHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEK 338
A+ + LG DY + + + + + L A +G+ +K
Sbjct: 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDK 64
Query: 339 ALYFATKHLEI 349
AL K LE+
Sbjct: 65 ALLLTKKLLEL 75
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 4e-07
Identities = 43/294 (14%), Positives = 85/294 (28%), Gaps = 20/294 (6%)
Query: 28 EGERLCKAGDCRAGVAFFQAAIQAGTDD---LRTLSAIYSQLGNAYFYLGDYQKAMQYHK 84
EG R + GD V F+AA+Q + L ++ + ++ ++
Sbjct: 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP 84
Query: 85 QDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK---LSEGR 141
+ T + L+ +Y A E
Sbjct: 85 DNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILG 144
Query: 142 ALYNLGNVYHAK---GKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAA 198
+L + K A+ + + V + +Y + ++
Sbjct: 145 SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN 204
Query: 199 QGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQA 258
LG T ++A+ ++ L++ + + NLG S I LG ++
Sbjct: 205 DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR------SRYNLGISCINLGAHRE 258
Query: 259 ASEHYKRTLVLAQDLGDRAVEAQACY-----SLGNTYTLLRDYPTAIDYHLRHL 307
A EH+ L + + E A +L ++L R L
Sbjct: 259 AVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 312
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Score = 47.1 bits (110), Expect = 4e-06
Identities = 46/335 (13%), Positives = 93/335 (27%), Gaps = 50/335 (14%)
Query: 43 AFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102
A + Q ++ + G GD A+ + + ++
Sbjct: 2 ATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK------HMEA 55
Query: 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQ 162
LG T + A+ +R LE+ L + ++ + + +
Sbjct: 56 WQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLR 115
Query: 163 QDPGEYPEEVKVC-----------------------LQEAIKYYEQNLALMKEINDTAAQ 199
P E + + + L D
Sbjct: 116 YTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDP--- 172
Query: 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259
LG + L G + +A+ L + + LG + + + A
Sbjct: 173 -DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQSEEA 225
Query: 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGE 319
Y+R L L ++ Y+LG + L + A+++ L L + ++ GE
Sbjct: 226 VAAYRRALELQPG------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGE 279
Query: 320 GRACW-----SLGNAHAARGNHEKALYFATKHLEI 349
G A +L A + G + + L
Sbjct: 280 GGAMSENIWSTLRLALSMLGQSDAYGAADARDLST 314
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.2 bits (106), Expect = 2e-06
Identities = 23/128 (17%), Positives = 46/128 (35%), Gaps = 27/128 (21%)
Query: 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVC 122
+LGN + D+ A++++ + E N G Y++
Sbjct: 7 EKELGNDAYKKKDFDTALKHYDK------AKELDPTNMTYITNQAAVYFEKGDYNKCREL 60
Query: 123 CKRHLEISRQ-LNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181
C++ +E+ R+ D +A +GN Y + K ++AI
Sbjct: 61 CEKAIEVGRENREDYRQIAKAYARIGNSYFKEEK--------------------YKDAIH 100
Query: 182 YYEQNLAL 189
+Y ++LA
Sbjct: 101 FYNKSLAE 108
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.0 bits (95), Expect = 5e-05
Identities = 22/132 (16%), Positives = 45/132 (34%), Gaps = 27/132 (20%)
Query: 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGR 201
LGN + K A+K+Y++ L
Sbjct: 6 KEKELGNDAYKKKD--------------------FDTALKHYDKAKELDPTN------MT 39
Query: 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREF-GDKAAERRANSNLGNSHIFLGEYQAAS 260
N Y+ G++ + ++ +++ RE D +A + +GNS+ +Y+ A
Sbjct: 40 YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAI 99
Query: 261 EHYKRTLVLAQD 272
Y ++L +
Sbjct: 100 HFYNKSLAEHRT 111
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.9 bits (92), Expect = 2e-04
Identities = 24/134 (17%), Positives = 46/134 (34%), Gaps = 27/134 (20%)
Query: 99 EAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIG 158
+A LGN +D A+ + E+ + N VY KG
Sbjct: 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEKG---- 52
Query: 159 KVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ-GRACGNLGNTYYLLGNFK 217
+ + E+ + + +E + Q +A +GN+Y+ +K
Sbjct: 53 ----------------DYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYK 96
Query: 218 QAIYYHQERLKIAR 231
AI+++ + L R
Sbjct: 97 DAIHFYNKSLAEHR 110
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} Length = 128 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.1 bits (90), Expect = 3e-04
Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 10/117 (8%)
Query: 234 GDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLL 293
G +A + + LGN ++ A +HY + L + Y
Sbjct: 1 GKQALKEK---ELGNDAYKKKDFDTALKHYDKAKELDPT------NMTYITNQAAVYFEK 51
Query: 294 RDYPTAIDYHLRHLIIAQQ-LMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEI 349
DY + + + + ++ D +A +GN++ ++ A++F K L
Sbjct: 52 GDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAE 108
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 14/123 (11%), Positives = 30/123 (24%), Gaps = 15/123 (12%)
Query: 34 KAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNM 93
G + + AI+A D +++ S GD+++A + Q + L
Sbjct: 8 SEGQLQQALELLIEAIKASPKD----ASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 63
Query: 94 EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153
L + +K + + N+
Sbjct: 64 LPGA------SQLRHLVKAAQARKDFAQGAATAKVLGENEEL-----TKSLVSFNLSMVS 112
Query: 154 GKA 156
Sbjct: 113 QDY 115
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 40.4 bits (94), Expect = 3e-04
Identities = 17/144 (11%), Positives = 42/144 (29%), Gaps = 17/144 (11%)
Query: 214 GNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDL 273
G +QA+ E +K + + S+ G+++ A E +++ L +
Sbjct: 10 GQLQQALELLIEAIKASPKDAS------LRSSFIELLCIDGDFERADEQLMQSIKLFPE- 62
Query: 274 GDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAAR 333
L + + ++ + E N
Sbjct: 63 -----YLPGASQLRHLVKAAQARKDFAQGAATAKVLGENE-----ELTKSLVSFNLSMVS 112
Query: 334 GNHEKALYFATKHLEISKQLGDPL 357
++E+ A + E+ ++ G
Sbjct: 113 QDYEQVSELALQIEELRQEKGFLA 136
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264 | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Score = 38.9 bits (90), Expect = 0.001
Identities = 19/130 (14%), Positives = 45/130 (34%), Gaps = 17/130 (13%)
Query: 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGD 235
LQ+A++ + A+ D + + + + G+F++A + +K+ E+
Sbjct: 12 LQQALELLIE--AIKASPKDASLRS----SFIELLCIDGDFERADEQLMQSIKLFPEY-- 63
Query: 236 KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRD 295
S L + + ++ VL ++ E N + +D
Sbjct: 64 ----LPGASQLRHLVKAAQARKDFAQGAATAKVLGENE-----ELTKSLVSFNLSMVSQD 114
Query: 296 YPTAIDYHLR 305
Y + L+
Sbjct: 115 YEQVSELALQ 124
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.6 bits (86), Expect = 0.002
Identities = 32/200 (16%), Positives = 55/200 (27%), Gaps = 42/200 (21%)
Query: 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124
+ GN F Y +A + + +T A N M + ++A+ C+
Sbjct: 9 EQGNRLFVGRKYPEAAACYGRAITRNPL------VAVYYTNRALCYLKMQQPEQALADCR 62
Query: 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYE 184
R LE+ Q A + LG EAI +
Sbjct: 63 RALELDGQSVK------AHFFLGQCQLEMES--------------------YDEAIANLQ 96
Query: 185 QNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANS 244
+ +L KE G+ + + K+ + R+ E
Sbjct: 97 RAYSLAKEQRL------NFGDDIPSALRIAKKKRWNSIEERRIHQESEL----HSYLTRL 146
Query: 245 NLGNSHIFLGEYQAASEHYK 264
L E Q E ++
Sbjct: 147 IAAERERELEECQRNHEGHE 166
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 609 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.96 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.94 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.93 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.88 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.86 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.79 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 99.78 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.76 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.74 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.71 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.67 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.66 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.57 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.45 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 99.4 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.39 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.37 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.37 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 99.33 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.3 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 99.28 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.27 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.24 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 99.24 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.21 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.19 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 99.18 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 99.17 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.16 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.16 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 99.15 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 99.14 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.09 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.08 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.04 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 99.03 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 99.02 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 99.01 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 99.0 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.98 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.87 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.8 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.8 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 98.79 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 98.75 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.45 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.23 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 98.16 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 98.05 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.78 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 97.48 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.97 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 96.73 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.71 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 89.92 | |
| d2o02a1 | 230 | zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | 87.84 | |
| d1o9da_ | 236 | 14-3-3-like protein C {Common tobacco (Nicotiana t | 85.52 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.43 | |
| d2crba1 | 83 | Nuclear receptor binding factor 2, NRBF2, N-termin | 80.38 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 80.12 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.96 E-value=8.3e-28 Score=245.86 Aligned_cols=314 Identities=21% Similarity=0.215 Sum_probs=270.0
Q ss_pred chhhhhhHhhhcCCCcchhHHHHHHHH------------HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH
Q psy10738 2 SVGNISSSDSQSGGADGGNMCLELALE------------GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA 69 (609)
Q Consensus 2 ~l~~Lg~~~~~~g~~~~a~~~~~l~~~------------g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~ 69 (609)
.|..||..+.+.|++++|..++..+++ |.++...|++++|+.+|+++++.+|++. .++..+|.+
T Consensus 1 gll~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~----~a~~~l~~~ 76 (388)
T d1w3ba_ 1 GPMELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLA----EAYSNLGNV 76 (388)
T ss_dssp CCCTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH----HHHHHHHHH
T ss_pred ChHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHHHHHH
Confidence 367889999999999999998876655 8999999999999999999999999884 488999999
Q ss_pred HHHhCCHHHHHHHHHHHHHHHHHc--------------------------------------------------------
Q psy10738 70 YFYLGDYQKAMQYHKQDLTLARNM-------------------------------------------------------- 93 (609)
Q Consensus 70 ~~~~g~~~~A~~~~~~al~~~~~~-------------------------------------------------------- 93 (609)
|...|++++|+..+..++......
T Consensus 77 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (388)
T d1w3ba_ 77 YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKA 156 (388)
T ss_dssp HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHH
T ss_pred hhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHH
Confidence 999999999999998877542100
Q ss_pred ------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCC
Q psy10738 94 ------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGE 167 (609)
Q Consensus 94 ------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~ 167 (609)
...+..+.++..+|..+...|++++|..++++++.+.+ ....++..+|.++...|+
T Consensus 157 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~l~~~~~~~~~------------ 218 (388)
T d1w3ba_ 157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP------NFLDAYINLGNVLKEARI------------ 218 (388)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHTTTC------------
T ss_pred HHHHhhccCcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc------ccHHHHHHHhhhhhcccc------------
Confidence 01122356788899999999999999999999998765 456789999999999999
Q ss_pred CchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHH
Q psy10738 168 YPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLG 247 (609)
Q Consensus 168 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la 247 (609)
+++|+..++++..+ .+.....+..+|.++...|++++|+.+|++++++.+... .++..+|
T Consensus 219 --------~~~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~------~~~~~l~ 278 (388)
T d1w3ba_ 219 --------FDRAVAAYLRALSL------SPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP------DAYCNLA 278 (388)
T ss_dssp --------TTHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH------HHHHHHH
T ss_pred --------HHHHHHHHHHhHHH------hhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHH
Confidence 99999999998876 334456888999999999999999999999998755432 3889999
Q ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHH
Q psy10738 248 NSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLG 327 (609)
Q Consensus 248 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La 327 (609)
.++...|++++|+..++.++...+.. ...+..+|.++...|++++|+.+|++++++.++ ...++..+|
T Consensus 279 ~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~------~~~~~~~la 346 (388)
T d1w3ba_ 279 NALKEKGSVAEAEDCYNTALRLCPTH------ADSLNNLANIKREQGNIEEAVRLYRKALEVFPE------FAAAHSNLA 346 (388)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT------CHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHhhhccCCcc------chhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC------CHHHHHHHH
Confidence 99999999999999999988776543 678889999999999999999999999987554 356899999
Q ss_pred HHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 328 NAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 328 ~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
.+|..+|++++|+.+|++++++. +....++.+||.++..+|+
T Consensus 347 ~~~~~~g~~~~A~~~~~~al~l~------P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 347 SVLQQQGKLQEALMHYKEAIRIS------PTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTC------TTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999864 5668899999999999985
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.9e-26 Score=231.93 Aligned_cols=295 Identities=21% Similarity=0.222 Sum_probs=252.6
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNL 106 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~l 106 (609)
..|..+++.|+|++|+..|+++++..|+++. ++..+|.+|...|++++|+.++++++++ .|..+.++..+
T Consensus 4 ~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~----~~~~la~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~l 73 (388)
T d1w3ba_ 4 ELAHREYQAGDFEAAERHCMQLWRQEPDNTG----VLLLLSSIHFQCRRLDRSAHFSTLAIKQ------NPLLAEAYSNL 73 (388)
T ss_dssp THHHHHHHHTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHH
Confidence 3578899999999999999999999998854 8899999999999999999999999998 77788999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcC----------------------------------------------------
Q psy10738 107 GNTLKVMGKYDEAMVCCKRHLEISRQLN---------------------------------------------------- 134 (609)
Q Consensus 107 g~~~~~~g~~~~A~~~~~~al~l~~~~~---------------------------------------------------- 134 (609)
|.+|...|++++|+.++..+....+...
T Consensus 74 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (388)
T d1w3ba_ 74 GNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHH
T ss_pred HHHhhhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhh
Confidence 9999999999999999988876422100
Q ss_pred ----------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHH
Q psy10738 135 ----------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACG 204 (609)
Q Consensus 135 ----------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 204 (609)
..+..+.++..+|.++...|+ +++|..++++++.+ .+....++.
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--------------------~~~A~~~~~~al~~------~p~~~~~~~ 207 (388)
T d1w3ba_ 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGE--------------------IWLAIHHFEKAVTL------DPNFLDAYI 207 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTC--------------------HHHHHHHHHHHHHH------CTTCHHHHH
T ss_pred hHHHHHHhhccCcchhHHHHhhcccccccCc--------------------HHHHHHHHHHHHHh------CcccHHHHH
Confidence 000124567788899999998 99999999999887 344567899
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284 (609)
Q Consensus 205 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 284 (609)
.+|.++...|++++|+..++++....+.. ...+..+|.++...|++++|+.+|++++++.+.. ..++.
T Consensus 208 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~ 275 (388)
T d1w3ba_ 208 NLGNVLKEARIFDRAVAAYLRALSLSPNH------AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHF------PDAYC 275 (388)
T ss_dssp HHHHHHHTTTCTTHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSC------HHHHH
T ss_pred HHhhhhhccccHHHHHHHHHHhHHHhhhH------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHH
Confidence 99999999999999999999988764432 2378889999999999999999999999876543 67889
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHH
Q psy10738 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQM 364 (609)
Q Consensus 285 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~ 364 (609)
.+|.++...|++++|+.++++++...+. ...++..+|.++...|++++|+.++++++++. +....++.
T Consensus 276 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~------p~~~~~~~ 343 (388)
T d1w3ba_ 276 NLANALKEKGSVAEAEDCYNTALRLCPT------HADSLNNLANIKREQGNIEEAVRLYRKALEVF------PEFAAAHS 343 (388)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC------TTCHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHhhhccCCc------cchhhhHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHH
Confidence 9999999999999999999998876543 35588899999999999999999999998764 55678999
Q ss_pred HHHHHHHHcCCCCCCCC
Q psy10738 365 NVTDLRKALGMSTNDLS 381 (609)
Q Consensus 365 ~la~l~~~~g~~~~al~ 381 (609)
.+|.++..+|+.++|+.
T Consensus 344 ~la~~~~~~g~~~~A~~ 360 (388)
T d1w3ba_ 344 NLASVLQQQGKLQEALM 360 (388)
T ss_dssp HHHHHHHTTTCCHHHHH
T ss_pred HHHHHHHHcCCHHHHHH
Confidence 99999999999887765
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.93 E-value=9.6e-23 Score=205.30 Aligned_cols=327 Identities=13% Similarity=0.007 Sum_probs=281.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDD-LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
...++|.+++..|++++|+.+|+++++..|.+ ......++..+|.+|...|++++|+.++++++.+....++.+....+
T Consensus 14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 93 (366)
T d1hz4a_ 14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS 93 (366)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 44567999999999999999999999998864 33456688999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLND--KLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAI 180 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d--~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~ 180 (609)
+..++.++...|++..|...+.+++.+.+.... ....+.++..+|.++...|+ ++.+.
T Consensus 94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~--------------------~~~a~ 153 (366)
T d1hz4a_ 94 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWAR--------------------LDEAE 153 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTC--------------------HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcc--------------------hhhhH
Confidence 999999999999999999999999999887654 34566788899999999999 99999
Q ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCh-HHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 181 KYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDK-AAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 181 ~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 259 (609)
.++.+++......+. .....++...+..+...|++.++..++.++..+....... .....++..+|.++...|++++|
T Consensus 154 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 232 (366)
T d1hz4a_ 154 ASARSGIEVLSSYQP-QQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAA 232 (366)
T ss_dssp HHHHHHHHHTTTSCG-GGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhhhhhh-hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHH
Confidence 999999988766544 3346788899999999999999999999999988876553 44566788899999999999999
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
..++++++...+. +.......+..+|.++...|++++|+.++++++.+....+.......++..+|.+|...|++++|
T Consensus 233 ~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 310 (366)
T d1hz4a_ 233 ANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDA 310 (366)
T ss_dssp HHHHHHSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHhccc--cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHH
Confidence 9999988765443 33345667788999999999999999999999999999888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHc
Q psy10738 340 LYFATKHLEISKQLGDPLGQVTAQMNVTDLRKAL 373 (609)
Q Consensus 340 ~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~ 373 (609)
+.++++|+++....+...........++.++..+
T Consensus 311 ~~~l~~Al~l~~~~~~~~~~~~~~~~~~~~~~~l 344 (366)
T d1hz4a_ 311 QRVLLDALKLANRTGFISHFVIEGEAMAQQLRQL 344 (366)
T ss_dssp HHHHHHHHHHHHHHCCCHHHHTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887655444444455544444
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.1e-22 Score=203.53 Aligned_cols=276 Identities=17% Similarity=0.141 Sum_probs=216.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+.+|..++..|++++|+..|+++++.+|++.. +|..+|.++...|++++|+.++.+++++ .|....++..
T Consensus 23 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~----a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~~~~~ 92 (323)
T d1fcha_ 23 FEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME----AWQYLGTTQAENEQELLAISALRRCLEL------KPDNQTALMA 92 (323)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH----HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHcCChHHHHHHHHhhhcc------cccccccccc
Confidence 45799999999999999999999999999854 8999999999999999999999999998 6778899999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcH---HHHHHHHHH------HHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKL---SEGRALYNL------GNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~---~~~~~~~~l------g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
+|.+|...|++++|+..+++++.+.+...... ........+ ...+...+. +
T Consensus 93 la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~ 152 (323)
T d1fcha_ 93 LAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSL--------------------F 152 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHH--------------------H
T ss_pred ccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhH--------------------H
Confidence 99999999999999999999988765322110 111111111 112223334 8
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEY 256 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 256 (609)
.+|+..+.+++.+.+... .+.++..+|.++...|++++|+.++++++...+.. ..++..+|.+|...|++
T Consensus 153 ~~a~~~~~~al~~~p~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~------~~~~~~lg~~~~~~g~~ 222 (323)
T d1fcha_ 153 LEVKELFLAAVRLDPTSI----DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND------YLLWNKLGATLANGNQS 222 (323)
T ss_dssp HHHHHHHHHHHHHSTTSC----CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhhccc----ccccchhhHHHHHHHHHHhhhhccccccccccccc------ccchhhhhhcccccccc
Confidence 889999988887633222 24678899999999999999999999999875543 24899999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-----hHHHHHHHHHHHHH
Q psy10738 257 QAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV-----GEGRACWSLGNAHA 331 (609)
Q Consensus 257 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~~~~~~~La~~~~ 331 (609)
++|+.+|++++++.+.. +.+++.+|.+|...|++++|+.+|++++.+.++..... ....++..++.++.
T Consensus 223 ~~A~~~~~~al~~~p~~------~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~ 296 (323)
T d1fcha_ 223 EEAVAAYRRALELQPGY------IRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALS 296 (323)
T ss_dssp HHHHHHHHHHHHHCTTC------HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhhcc------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999876543 67899999999999999999999999999988754321 12235566777888
Q ss_pred HcCChHHHHHHHHHHH
Q psy10738 332 ARGNHEKALYFATKHL 347 (609)
Q Consensus 332 ~~g~~~~A~~~~~~al 347 (609)
.+|+.+.+.....+.+
T Consensus 297 ~~~~~d~~~~~~~~~l 312 (323)
T d1fcha_ 297 MLGQSDAYGAADARDL 312 (323)
T ss_dssp HHTCGGGHHHHHTTCH
T ss_pred HcCCHHHHHHHHHhCH
Confidence 8888776655555544
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=4.4e-22 Score=199.19 Aligned_cols=285 Identities=16% Similarity=0.117 Sum_probs=220.8
Q ss_pred HHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHH
Q psy10738 45 FQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCK 124 (609)
Q Consensus 45 ~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~ 124 (609)
|++++...++++.......+..|..++..|++++|+..|+++++. .|..+.++..+|.++...|++++|+.++.
T Consensus 4 ~~~~~~~~~~n~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~------~P~~~~a~~~lg~~~~~~~~~~~A~~~~~ 77 (323)
T d1fcha_ 4 YDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQ------DPKHMEAWQYLGTTQAENEQELLAISALR 77 (323)
T ss_dssp HHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHS------CTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHhHhhcccCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 445555444433211223568999999999999999999999988 78889999999999999999999999999
Q ss_pred HHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC---hHHHHH
Q psy10738 125 RHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND---TAAQGR 201 (609)
Q Consensus 125 ~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~---~~~~~~ 201 (609)
+++++.+ ....++..+|.+|...|+ +++|+..+++++.+.+.... ......
T Consensus 78 ~al~~~p------~~~~~~~~la~~~~~~~~--------------------~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 131 (323)
T d1fcha_ 78 RCLELKP------DNQTALMALAVSFTNESL--------------------QRQACEILRDWLRYTPAYAHLVTPAEEGA 131 (323)
T ss_dssp HHHHHCT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHTSTTTGGGCC------
T ss_pred hhhcccc------cccccccccccccccccc--------------------ccccccchhhHHHhccchHHHHHhhhhhh
Confidence 9999866 446789999999999999 99999999999876433211 000111
Q ss_pred ------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 202 ------ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 202 ------~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
........+...+.+.+|+..+.+++.+.+...+ ..++..+|.++...|++++|+.++++++...+..
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~-- 205 (323)
T d1fcha_ 132 GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSID----PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND-- 205 (323)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC--
T ss_pred hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccc----cccchhhHHHHHHHHHHhhhhccccccccccccc--
Confidence 1112223345567788999999999887655443 3478899999999999999999999999876653
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 276 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 276 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
+.++..+|.+|...|++++|+.+|++++++.+. ...++..+|.+|..+|++++|+.+|++|+++......
T Consensus 206 ----~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~------~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 275 (323)
T d1fcha_ 206 ----YLLWNKLGATLANGNQSEEAVAAYRRALELQPG------YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRG 275 (323)
T ss_dssp ----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC--
T ss_pred ----ccchhhhhhcccccccchhHHHHHHHHHHHhhc------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChh
Confidence 678999999999999999999999999987543 3568999999999999999999999999999765432
Q ss_pred Cc-----hHHHHHHHHHHHHHHcCCCC
Q psy10738 356 PL-----GQVTAQMNVTDLRKALGMST 377 (609)
Q Consensus 356 ~~-----~~~~a~~~la~l~~~~g~~~ 377 (609)
.. ....++..++.++..+|+.+
T Consensus 276 ~~~~~~~~~~~~~~~l~~al~~~~~~d 302 (323)
T d1fcha_ 276 PRGEGGAMSENIWSTLRLALSMLGQSD 302 (323)
T ss_dssp ----CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred hhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence 21 22345566777777777643
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.86 E-value=6e-20 Score=184.48 Aligned_cols=299 Identities=12% Similarity=0.038 Sum_probs=259.4
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+.+....|.++...|++++|+.+++++++..+. .+......++..+|.+|...|++++|+.+|++++.+.+..++...
T Consensus 11 ~ae~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~-~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~ 89 (366)
T d1hz4a_ 11 HAEFNALRAQVAINDGNPDEAERLAKLALEELPP-GWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHY 89 (366)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT-TCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcC-CCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHH
Confidence 4567788899999999999999999999987543 234456778999999999999999999999999999999999889
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC--hHHHHHHHHHHHHHHHHcCCH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND--TAAQGRACGNLGNTYYLLGNF 216 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~ 216 (609)
...++.+++.++...|+ +..|...+.+++.+...... ....+.++..+|.++...|++
T Consensus 90 ~~~~~~~~~~~~~~~~~--------------------~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 149 (366)
T d1hz4a_ 90 ALWSLIQQSEILFAQGF--------------------LQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARL 149 (366)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcch
Confidence 99999999999999999 99999999999999887643 345667888999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC-cHHHHHHHHHHHHHHHHhCC
Q psy10738 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD-RAVEAQACYSLGNTYTLLRD 295 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~ 295 (609)
+.|..++.+++...+..+.. ....++...+..+...+++..+..++.++..+...... ......++..+|.++...|+
T Consensus 150 ~~a~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 228 (366)
T d1hz4a_ 150 DEAEASARSGIEVLSSYQPQ-QQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGD 228 (366)
T ss_dssp HHHHHHHHHHHHHTTTSCGG-GGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhhHHHHHHHHHHhhhhhhh-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhccc
Confidence 99999999999887765543 34567888999999999999999999999998877654 34456677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCC
Q psy10738 296 YPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGM 375 (609)
Q Consensus 296 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~ 375 (609)
+++|..++.+++.+.+. ........+..+|.++...|++++|..++++++.+.+..+..+....++..+|.++...|+
T Consensus 229 ~~~a~~~~~~~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 306 (366)
T d1hz4a_ 229 KAAAANWLRHTAKPEFA--NNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGR 306 (366)
T ss_dssp HHHHHHHHHHSCCCCCT--TCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCC
Confidence 99999999998766443 2334456778899999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q psy10738 376 STNDLS 381 (609)
Q Consensus 376 ~~~al~ 381 (609)
+..|+.
T Consensus 307 ~~~A~~ 312 (366)
T d1hz4a_ 307 KSDAQR 312 (366)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.79 E-value=1.4e-17 Score=163.62 Aligned_cols=229 Identities=11% Similarity=0.023 Sum_probs=192.3
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+..|...|.+|...|+|++|+.+|.+++++....++.+..+.++.++|.+|..+|++++|+.+|++++++.+..++...
T Consensus 36 Aa~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~ 115 (290)
T d1qqea_ 36 AADLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRR 115 (290)
T ss_dssp HHHHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchh
Confidence 34567778999999999999999999999999999999999999999999999999999999999999999999999989
Q ss_pred HHHHHHHHHHHHHH-cccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHH
Q psy10738 139 EGRALYNLGNVYHA-KGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFK 217 (609)
Q Consensus 139 ~~~~~~~lg~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~ 217 (609)
...++..+|.+|.. .|+ +++|+.+|++++++....++......++.++|.++..+|+|+
T Consensus 116 ~~~~~~~l~~~~~~~~~~--------------------~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 116 GANFKFELGEILENDLHD--------------------YAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp HHHHHHHHHHHHHHTTCC--------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHhHhhHHHH--------------------HHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHH
Confidence 99999999999865 699 999999999999999999998889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCC-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--hC
Q psy10738 218 QAIYYHQERLKIAREFGD-KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL--LR 294 (609)
Q Consensus 218 ~A~~~~~~al~~~~~~~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g 294 (609)
+|+.+|++++...+.... .......+...|.++...|++..|...+++++++.+...+.. ....+..+..++.. .+
T Consensus 176 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr-e~~~l~~l~~a~~~~d~e 254 (290)
T d1qqea_ 176 EASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSE 254 (290)
T ss_dssp HHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTT
T ss_pred HHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH-HHHHHHHHHHHHHhcCHH
Confidence 999999999887765442 233345678899999999999999999999988877654321 23445566666554 34
Q ss_pred CHHHHHHHHHHHHH
Q psy10738 295 DYPTAIDYHLRHLI 308 (609)
Q Consensus 295 ~~~~A~~~~~~al~ 308 (609)
.+++|+..|.++.+
T Consensus 255 ~~~eai~~y~~~~~ 268 (290)
T d1qqea_ 255 QLSEHCKEFDNFMR 268 (290)
T ss_dssp THHHHHHHHTTSSC
T ss_pred HHHHHHHHHHHHhh
Confidence 58888888875543
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.78 E-value=1.7e-17 Score=163.06 Aligned_cols=225 Identities=11% Similarity=0.017 Sum_probs=188.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHH
Q psy10738 102 SSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIK 181 (609)
Q Consensus 102 a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~ 181 (609)
.|...|.+|...|+|++|+.+|.+++++....++....+.++.++|.+|...|+ +++|+.
T Consensus 39 ~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~--------------------~~~A~~ 98 (290)
T d1qqea_ 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------------------SVNAVD 98 (290)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------------------HHHHHH
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--------------------cHHHHH
Confidence 344558889999999999999999999999999999999999999999999999 999999
Q ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHH
Q psy10738 182 YYEQNLALMKEINDTAAQGRACGNLGNTYYL-LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAAS 260 (609)
Q Consensus 182 ~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 260 (609)
+|++++.+....++......++.++|.+|.. .|++++|+.+|++++++.+..+.......++.++|.++..+|+|++|+
T Consensus 99 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~ 178 (290)
T d1qqea_ 99 SLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEAS 178 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHH
Confidence 9999999999999999999999999999876 699999999999999999999888888899999999999999999999
Q ss_pred HHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--cCChH
Q psy10738 261 EHYKRTLVLAQDLG-DRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--RGNHE 337 (609)
Q Consensus 261 ~~~~~al~~~~~~~-~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~ 337 (609)
.+|++++...+... ........+...|.++...|++..|...+++++++.+...+.. ....+..+..++.. .+.+.
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sr-e~~~l~~l~~a~~~~d~e~~~ 257 (290)
T d1qqea_ 179 DIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSR-ESNFLKSLIDAVNEGDSEQLS 257 (290)
T ss_dssp HHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTTHH
T ss_pred HHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchH-HHHHHHHHHHHHHhcCHHHHH
Confidence 99999998776553 2334556678889999999999999999999988876654422 23455566666554 34577
Q ss_pred HHHHHHHHHH
Q psy10738 338 KALYFATKHL 347 (609)
Q Consensus 338 ~A~~~~~~al 347 (609)
+|+..|.++.
T Consensus 258 eai~~y~~~~ 267 (290)
T d1qqea_ 258 EHCKEFDNFM 267 (290)
T ss_dssp HHHHHHTTSS
T ss_pred HHHHHHHHHh
Confidence 8887776543
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.76 E-value=1.9e-17 Score=164.67 Aligned_cols=234 Identities=11% Similarity=0.007 Sum_probs=195.2
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC-CHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 27 LEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG-DYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 27 ~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g-~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
..|.++.+.+.+++|+..+++||+++|++.. +|+.+|.++..+| ++++|+.++++++++ .+....++.+
T Consensus 48 ~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~----a~~~r~~~l~~l~~~~~eal~~~~~al~~------~p~~~~a~~~ 117 (315)
T d2h6fa1 48 YFRAVLQRDERSERAFKLTRDAIELNAANYT----VWHFRRVLLKSLQKDLHEEMNYITAIIEE------QPKNYQVWHH 117 (315)
T ss_dssp HHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHTTCCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHhCCchHHHHHHHHHHHHHCCCChH----HHHHHHHHHHHhCcCHHHHHHHHHHHHHH------HHhhhhHHHH
Confidence 3488889999999999999999999999854 8999999999987 599999999999999 8889999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQ 185 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 185 (609)
+|.++..+|++++|+.++.+++++.+ ....++.++|.++...|+ +++|+.++++
T Consensus 118 ~~~~~~~l~~~~eAl~~~~kal~~dp------~n~~a~~~~~~~~~~~~~--------------------~~~Al~~~~~ 171 (315)
T d2h6fa1 118 RRVLVEWLRDPSQELEFIADILNQDA------KNYHAWQHRQWVIQEFKL--------------------WDNELQYVDQ 171 (315)
T ss_dssp HHHHHHHHTCCTTHHHHHHHHHHHCT------TCHHHHHHHHHHHHHHTC--------------------CTTHHHHHHH
T ss_pred HhHHHHhhccHHHHHHHHhhhhhhhh------cchHHHHHHHHHHHHHHh--------------------hHHHHHHHHH
Confidence 99999999999999999999999877 557799999999999999 9999999999
Q ss_pred HHHHHHHhCChHHHHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 186 NLALMKEINDTAAQGRACGNLGNTYYLLGN------FKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 186 al~~~~~~~~~~~~~~~~~~lg~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
++++ .+....+|.++|.++...+. +++|+.++.+++.+.+.... ++.++|.++... ...++
T Consensus 172 al~~------~p~n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~~~------~~~~l~~ll~~~-~~~~~ 238 (315)
T d2h6fa1 172 LLKE------DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNES------AWNYLKGILQDR-GLSKY 238 (315)
T ss_dssp HHHH------CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHTTT-CGGGC
T ss_pred HHHH------CCccHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCchH------HHHHHHHHHHhc-ChHHH
Confidence 9998 55566789999999888776 67899999999988765433 778888876544 46788
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH--hCCHHHHHHHHHHHHHHHHHh
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL--LRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~--~g~~~~A~~~~~~al~~~~~~ 313 (609)
...++.++++.+...+ ..++..++.+|.. .++.+.+...+.+++.+....
T Consensus 239 ~~~~~~~~~l~~~~~~----~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l 290 (315)
T d2h6fa1 239 PNLLNQLLDLQPSHSS----PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 290 (315)
T ss_dssp HHHHHHHHHHTTTCCC----HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcCC----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 8888888887665443 3355556666644 467778888888888776553
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.74 E-value=3.5e-17 Score=162.66 Aligned_cols=241 Identities=10% Similarity=-0.028 Sum_probs=204.3
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHcCCc
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK-YDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~-~~~A~~~~~~al~l~~~~~d~ 136 (609)
....++..+|.++...+.+++|+..+++++++ .|....+|.++|.++...|. +++|+.++++++++.+
T Consensus 41 ~~~~a~~~~~~~~~~~e~~~~Al~~~~~ai~l------nP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p----- 109 (315)
T d2h6fa1 41 KFRDVYDYFRAVLQRDERSERAFKLTRDAIEL------NAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQP----- 109 (315)
T ss_dssp HHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT-----
T ss_pred HHHHHHHHHHHHHHhCCchHHHHHHHHHHHHH------CCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHH-----
Confidence 35778999999999999999999999999999 89999999999999999874 9999999999999877
Q ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCH
Q psy10738 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNF 216 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~ 216 (609)
....++.++|.++..+|+ +++|+.++.+++++ .+....+|.++|.++..+|++
T Consensus 110 -~~~~a~~~~~~~~~~l~~--------------------~~eAl~~~~kal~~------dp~n~~a~~~~~~~~~~~~~~ 162 (315)
T d2h6fa1 110 -KNYQVWHHRRVLVEWLRD--------------------PSQELEFIADILNQ------DAKNYHAWQHRQWVIQEFKLW 162 (315)
T ss_dssp -TCHHHHHHHHHHHHHHTC--------------------CTTHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCC
T ss_pred -hhhhHHHHHhHHHHhhcc--------------------HHHHHHHHhhhhhh------hhcchHHHHHHHHHHHHHHhh
Confidence 667899999999999999 99999999999998 555678999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 217 KQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE------YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY 290 (609)
Q Consensus 217 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~------~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 290 (609)
++|+.++++++++.+.... +|.++|.++...+. +++|+.++.+++.+.+.. ..++..+|.++
T Consensus 163 ~~Al~~~~~al~~~p~n~~------a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~~------~~~~~~l~~ll 230 (315)
T d2h6fa1 163 DNELQYVDQLLKEDVRNNS------VWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHN------ESAWNYLKGIL 230 (315)
T ss_dssp TTHHHHHHHHHHHCTTCHH------HHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTC------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCccHH------HHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCCc------hHHHHHHHHHH
Confidence 9999999999998665444 88999999888776 679999999999988764 66788888876
Q ss_pred HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH--cCChHHHHHHHHHHHHHHHHc
Q psy10738 291 TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA--RGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 291 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~--~g~~~~A~~~~~~al~l~~~~ 353 (609)
... ...++...+.+++.+.+.... ..++..++.+|.. .++.+.+...+.+++++....
T Consensus 231 ~~~-~~~~~~~~~~~~~~l~~~~~~----~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l 290 (315)
T d2h6fa1 231 QDR-GLSKYPNLLNQLLDLQPSHSS----PYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL 290 (315)
T ss_dssp TTT-CGGGCHHHHHHHHHHTTTCCC----HHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred Hhc-ChHHHHHHHHHHHHhCCCcCC----HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence 554 468888999988877655332 3355666776654 367778888899998886654
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.71 E-value=7.1e-17 Score=155.26 Aligned_cols=228 Identities=16% Similarity=0.006 Sum_probs=166.8
Q ss_pred CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCC
Q psy10738 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGK 115 (609)
Q Consensus 36 g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~ 115 (609)
++++.|+..+++++...+......+.+++.+|.+|...|++++|+.+|++++.+ .|..+.+++++|.+|..+|+
T Consensus 13 ~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l------~p~~~~a~~~lg~~~~~~g~ 86 (259)
T d1xnfa_ 13 LQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAI------RPDMPEVFNYLGIYLTQAGN 86 (259)
T ss_dssp HHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhcc------CCCCHHHHhhhchHHHHHHH
Confidence 356778888889888766555667889999999999999999999999999999 78889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCC
Q psy10738 116 YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEIND 195 (609)
Q Consensus 116 ~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~ 195 (609)
+++|+.+|++++++.+ ....++.++|.+|...|+ +++|+..+++++++.+
T Consensus 87 ~~~A~~~~~~al~~~p------~~~~a~~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~p---- 136 (259)
T d1xnfa_ 87 FDAAYEAFDSVLELDP------TYNYAHLNRGIALYYGGR--------------------DKLAQDDLLAFYQDDP---- 136 (259)
T ss_dssp HHHHHHHHHHHHHHCT------TCTHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHHCT----
T ss_pred HHHhhhhhhHHHHHHh------hhhhhHHHHHHHHHHHhh--------------------HHHHHHHHHHHHhhcc----
Confidence 9999999999999876 445689999999999999 9999999999988732
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC
Q psy10738 196 TAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGD 275 (609)
Q Consensus 196 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 275 (609)
........++..+...+..+.+.......... .............++. ....+.++.+...+.......+.
T Consensus 137 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~--- 207 (259)
T d1xnfa_ 137 --NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEH--- 207 (259)
T ss_dssp --TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHH---
T ss_pred --ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcc---
Confidence 22334555666666666655444433332221 1111111111111111 11223344555555555555544
Q ss_pred cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 276 RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQ 311 (609)
Q Consensus 276 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 311 (609)
...+++.+|.+|...|++++|+.+|++++...+
T Consensus 208 ---~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 240 (259)
T d1xnfa_ 208 ---LSETNFYLGKYYLSLGDLDSATALFKLAVANNV 240 (259)
T ss_dssp ---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred ---cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC
Confidence 367888999999999999999999999987644
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.67 E-value=7.8e-17 Score=161.59 Aligned_cols=270 Identities=9% Similarity=-0.056 Sum_probs=214.0
Q ss_pred HhcCC-hHHHHHHHHHHHHhCCcchhHHHHHHHHHHHH----------HHHhCCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 33 CKAGD-CRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNA----------YFYLGDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 33 ~~~g~-~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~----------~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
...|. .++|+.+++++++.+|++.. +|...+.+ +...|.+++|+.++++++.. .|....
T Consensus 39 ~~~~~~~~~al~~~~~~l~~~P~~~~----a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~------~pk~~~ 108 (334)
T d1dcea1 39 RQAGELDESVLELTSQILGANPDFAT----LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV------NPKSYG 108 (334)
T ss_dssp HHTTCCSHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH------CTTCHH
T ss_pred HhcccccHHHHHHHHHHHHHCCCcHH----HHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHh------CCCcHH
Confidence 34444 48999999999999999854 44444443 44456688999999999988 788889
Q ss_pred HHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 102 SSGNLGNTLKVMGK--YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 102 a~~~lg~~~~~~g~--~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
++..+|.++...++ +++|+.++++++.+.+. .....+..+|.++...|. +++|
T Consensus 109 ~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-----~~~~~~~~~~~~~~~~~~--------------------~~~A 163 (334)
T d1dcea1 109 TWHHRCWLLSRLPEPNWARELELCARFLEADER-----NFHCWDYRRFVAAQAAVA--------------------PAEE 163 (334)
T ss_dssp HHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-----CHHHHHHHHHHHHHTCCC--------------------HHHH
T ss_pred HHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-----hhhhhhhHHHHHHHhccc--------------------cHHH
Confidence 99999999888765 89999999999998552 222335678899999999 9999
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHH
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAA 259 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 259 (609)
+.++++++.+ .+....++.++|.++..+|++++|+..+.+++.+.+... .....+...+..++|
T Consensus 164 l~~~~~~i~~------~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~~~l~~~~~a 227 (334)
T d1dcea1 164 LAFTDSLITR------NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKEL----------ELVQNAFFTDPNDQS 227 (334)
T ss_dssp HHHHHTTTTT------TCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHH----------HHHHHHHHHCSSCSH
T ss_pred HHHHHHHHHc------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhHHHHH----------HHHHHHHHhcchhHH
Confidence 9999998877 455677999999999999999999999999888876532 233445667888889
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHH
Q psy10738 260 SEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKA 339 (609)
Q Consensus 260 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 339 (609)
...+.+++...+.. ...+..+|.++...|++.+|+..+.+++...+. ...++..+|.++..+|++++|
T Consensus 228 ~~~~~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~~~~~eA 295 (334)
T d1dcea1 228 AWFYHRWLLGRAEP------LFRCELSVEKSTVLQSELESCKELQELEPENKW------CLLTIILLMRALDPLLYEKET 295 (334)
T ss_dssp HHHHHHHHHSCCCC------SSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH------HHHHHHHHHHHHCTGGGHHHH
T ss_pred HHHHHHHHHhCcch------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch------HHHHHHHHHHHHHHCCCHHHH
Confidence 99998887655433 335567788899999999999999988876554 567999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHH
Q psy10738 340 LYFATKHLEISKQLGDPLGQVTAQMNVTDLRK 371 (609)
Q Consensus 340 ~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~ 371 (609)
+.++++++++. |.....+..|+..+.
T Consensus 296 ~~~~~~ai~ld------P~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 296 LQYFSTLKAVD------PMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHC------GGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC------cccHHHHHHHHHHHh
Confidence 99999999985 455666666665554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=6.5e-16 Score=148.39 Aligned_cols=243 Identities=15% Similarity=-0.009 Sum_probs=165.0
Q ss_pred CHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 75 DYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 75 ~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
+.+.|+..+.+++.. ....++..+.+++.+|.+|...|++++|+.+|++++.+.+ ..+.+++++|.+|...|
T Consensus 14 ~~e~al~~~~e~l~~--~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p------~~~~a~~~lg~~~~~~g 85 (259)
T d1xnfa_ 14 QQEVILARMEQILAS--RALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRP------DMPEVFNYLGIYLTQAG 85 (259)
T ss_dssp HHHHHHHHHHHHHTS--SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh--hhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCC------CCHHHHhhhchHHHHHH
Confidence 455666666665442 1123567889999999999999999999999999999876 45778999999999999
Q ss_pred cccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 155 KAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
+ +++|+.+|++++++ .+....++.++|.+|..+|++++|+.++++++++.+...
T Consensus 86 ~--------------------~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 139 (259)
T d1xnfa_ 86 N--------------------FDAAYEAFDSVLEL------DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 139 (259)
T ss_dssp C--------------------HHHHHHHHHHHHHH------CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred H--------------------HHHhhhhhhHHHHH------HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccccH
Confidence 9 99999999999998 344456899999999999999999999999998755321
Q ss_pred ChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhc
Q psy10738 235 DKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLM 314 (609)
Q Consensus 235 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 314 (609)
.....++..+...+..+.+.......... .............++. ....+.++.+...+..+....+.
T Consensus 140 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-- 207 (259)
T d1xnfa_ 140 ------FRSLWLYLAEQKLDEKQAKEVLKQHFEKS---DKEQWGWNIVEFYLGN-ISEQTLMERLKADATDNTSLAEH-- 207 (259)
T ss_dssp ------HHHHHHHHHHHHHCHHHHHHHHHHHHHHS---CCCSTHHHHHHHHTTS-SCHHHHHHHHHHHCCSHHHHHHH--
T ss_pred ------HHHHHHHHHHHHhhhHHHHHHHHHHhhcc---chhhhhhhHHHHHHHH-HHHHHHHHHHHHHHHHhhhcCcc--
Confidence 14445566666666555444333322211 1111111111111111 11222344444444444444433
Q ss_pred chhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHH
Q psy10738 315 DRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDL 369 (609)
Q Consensus 315 ~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l 369 (609)
...+++.+|.+|...|++++|+.+|++++.... .+-.....++..|+.+
T Consensus 208 ----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p--~~~~~~~~a~~~L~~l 256 (259)
T d1xnfa_ 208 ----LSETNFYLGKYYLSLGDLDSATALFKLAVANNV--HNFVEHRYALLELSLL 256 (259)
T ss_dssp ----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC--TTCHHHHHHHHHHHHH
T ss_pred ----cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHh
Confidence 456889999999999999999999999986431 1222334455555544
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.57 E-value=4.9e-16 Score=155.65 Aligned_cols=237 Identities=7% Similarity=-0.087 Sum_probs=189.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhC--CHHHHHHHHHHHHHHHHHcCChhhHHHH-HHHHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLG--DYQKAMQYHKQDLTLARNMEDKLGEAKS-SGNLGN 108 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g--~~~~A~~~~~~al~~~~~~~d~~~~~~a-~~~lg~ 108 (609)
+...|.+.+|+.+++++++.+|++.. ++..+|.++...+ ++++|+..+.+++.. .+....+ +..+|.
T Consensus 83 ~~~~~~~~~al~~~~~~l~~~pk~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~al~~------~~~~~~~~~~~~~~ 152 (334)
T d1dcea1 83 EESAALVKAELGFLESCLRVNPKSYG----TWHHRCWLLSRLPEPNWARELELCARFLEA------DERNFHCWDYRRFV 152 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHTCSSCCHHHHHHHHHHHHHH------CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcHH----HHHHhhHHHHHhccccHHHHHHHHHHHHhh------CchhhhhhhhHHHH
Confidence 33445689999999999999999855 7788888887776 489999999999998 5555555 467889
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
++...|.+++|+.++++++.+.+ ....+++++|.++...|+ +++|+..+.+++.
T Consensus 153 ~~~~~~~~~~Al~~~~~~i~~~p------~~~~a~~~l~~~~~~~~~--------------------~~~A~~~~~~~~~ 206 (334)
T d1dcea1 153 AAQAAVAPAEELAFTDSLITRNF------SNYSSWHYRSCLLPQLHP--------------------QPDSGPQGRLPEN 206 (334)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTTC------CCHHHHHHHHHHHHHHSC--------------------CCCSSSCCSSCHH
T ss_pred HHHhccccHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHhcC--------------------HHHHHHHHHHhHH
Confidence 99999999999999999988766 556799999999999999 6677666666666
Q ss_pred HHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 189 LMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLV 268 (609)
Q Consensus 189 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 268 (609)
+.... ......+..++..++|...+.+++...+.... .+..+|.++...|++.+|+..+.+++.
T Consensus 207 ~~~~~----------~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~------~~~~l~~~~~~~~~~~~a~~~~~~~~~ 270 (334)
T d1dcea1 207 VLLKE----------LELVQNAFFTDPNDQSAWFYHRWLLGRAEPLF------RCELSVEKSTVLQSELESCKELQELEP 270 (334)
T ss_dssp HHHHH----------HHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSS------SCCCCHHHHHHHHHHHHHHHHHHHHCT
T ss_pred hHHHH----------HHHHHHHHHhcchhHHHHHHHHHHHhCcchhh------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 64321 12233445678888899999998877665554 677889999999999999999998887
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH
Q psy10738 269 LAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA 332 (609)
Q Consensus 269 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~ 332 (609)
..+. ...++..+|.+|...|++++|+.+|++++++.|. ....|..|+..+..
T Consensus 271 ~~p~------~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~------~~~y~~~L~~~~~~ 322 (334)
T d1dcea1 271 ENKW------CLLTIILLMRALDPLLYEKETLQYFSTLKAVDPM------RAAYLDDLRSKFLL 322 (334)
T ss_dssp TCHH------HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGG------GHHHHHHHHHHHHH
T ss_pred hCch------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcc------cHHHHHHHHHHHhH
Confidence 7665 4789999999999999999999999999998664 34466677666654
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.45 E-value=5.8e-14 Score=148.14 Aligned_cols=237 Identities=11% Similarity=0.030 Sum_probs=142.6
Q ss_pred HHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccccc
Q psy10738 78 KAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAI 157 (609)
Q Consensus 78 ~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~ 157 (609)
+|++++++|+.+ .+..+.++.++|.++..+|++.+| |++++.+.+ ..+..+...+.++ . ..
T Consensus 4 eA~q~~~qA~~l------~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp------~~a~~~~~e~~Lw-~-~~-- 64 (497)
T d1ya0a1 4 QSAQYLRQAEVL------KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDL------EYALDKKVEQDLW-N-HA-- 64 (497)
T ss_dssp HHHHHHHHHHHH------HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCH------HHHHHHTHHHHHH-H-HH--
T ss_pred HHHHHHHHHHHc------CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcCh------hhHHHHhHHHHHH-H-HH--
Confidence 688999999998 788888899999999999999876 778876655 2222222222211 1 11
Q ss_pred ccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChH
Q psy10738 158 GKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKA 237 (609)
Q Consensus 158 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 237 (609)
|..+++.+++..+...... .. ......++.++...|.|+.|+..+.+++.+.+....
T Consensus 65 ------------------y~~~ie~~r~~~k~~~~~~-~~--~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~~~~~-- 121 (497)
T d1ya0a1 65 ------------------FKNQITTLQGQAKNRANPN-RS--EVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV-- 121 (497)
T ss_dssp ------------------THHHHHHHHHHHSCSSCTT-TT--HHHHHHHHHHHHHHHHHHHHHHHHTC------------
T ss_pred ------------------HHHHHHHHHHhcccccCcc-HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCChhhHH--
Confidence 4455555554443211111 11 111223455555667777777777777666444333
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh
Q psy10738 238 AERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV 317 (609)
Q Consensus 238 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 317 (609)
.+.++|.++...|++++|+..+.+++.... ..++..+|.++...|++++|+.+|.+|+.+.+..+
T Consensus 122 ----~~~~lg~~~~~~~~~~~A~~~~~~al~~~~--------~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~--- 186 (497)
T d1ya0a1 122 ----KSSQLGIISNKQTHTSAIVKPQSSSCSYIC--------QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG--- 186 (497)
T ss_dssp -------------------------CCHHHHHHH--------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS---
T ss_pred ----HHHHhHHHHHhCCCHHHHHHHHHHHhCCCH--------HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCch---
Confidence 778888889999999999988888887654 34777889999999999999999999998877654
Q ss_pred hHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHcCCCCCCC
Q psy10738 318 GEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLGQVTAQMNVTDLRKALGMSTNDL 380 (609)
Q Consensus 318 ~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~a~~~la~l~~~~g~~~~al 380 (609)
.++..||.++...|++.+|+.+|.+|+.+. +....|+.+|+.++........+.
T Consensus 187 ---~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~------~~~~~a~~nL~~~~~~~~~~~~~~ 240 (497)
T d1ya0a1 187 ---QPYNQLAILASSKGDHLTTIFYYCRSIAVK------FPFPAASTNLQKALSKALESRDEV 240 (497)
T ss_dssp ---HHHHHHHHHHHHTTCHHHHHHHHHHHHSSS------BCCHHHHHHHHHHHHHHTTSCCCC
T ss_pred ---HHHHHHHHHHHHcCCHHHHHHHHHHHHhCC------CCCHHHHHHHHHHHHHhhhhhhhh
Confidence 488889999999999999999999988654 556788888888888777655443
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.40 E-value=8.5e-13 Score=139.02 Aligned_cols=231 Identities=11% Similarity=-0.014 Sum_probs=138.9
Q ss_pred HHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHH
Q psy10738 40 AGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEA 119 (609)
Q Consensus 40 ~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A 119 (609)
+|+++|++|+++.|+... ++..+|.++...|++.+| |++++.. ++..+.++...+... ...|..+
T Consensus 4 eA~q~~~qA~~l~p~~a~----a~~~la~~~~~~~~l~ea---ye~~i~~------dp~~a~~~~~e~~Lw--~~~y~~~ 68 (497)
T d1ya0a1 4 QSAQYLRQAEVLKADMTD----SKLGPAEVWTSRQALQDL---YQKMLVT------DLEYALDKKVEQDLW--NHAFKNQ 68 (497)
T ss_dssp HHHHHHHHHHHHHGGGTC----SSSCSSSSHHHHHHHHHH---HHHHHHH------CHHHHHHHTHHHHHH--HHHTHHH
T ss_pred HHHHHHHHHHHcCCCCHH----HHhhHHHHHHHHchHHHH---HHHHHHc------ChhhHHHHhHHHHHH--HHHHHHH
Confidence 789999999999987644 778899999999999876 7888776 555554443332222 1124455
Q ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHH
Q psy10738 120 MVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQ 199 (609)
Q Consensus 120 ~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 199 (609)
++.+++..+... ...........++.++...+. |+.|+..+.+++.+ .+..
T Consensus 69 ie~~r~~~k~~~---~~~~~~~~~~~~~~l~~a~~~--------------------Y~~ai~~l~~~~~l------~~~~ 119 (497)
T d1ya0a1 69 ITTLQGQAKNRA---NPNRSEVQANLSLFLEAASGF--------------------YTQLLQELCTVFNV------DLPC 119 (497)
T ss_dssp HHHHHHHHSCSS---CTTTTHHHHHHHHHHHHHHHH--------------------HHHHHHHHTC--------------
T ss_pred HHHHHHhccccc---CccHHHHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHCC------Chhh
Confidence 555554442211 111111122234555556666 77777777766655 4455
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 200 GRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVE 279 (609)
Q Consensus 200 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 279 (609)
...+.++|.++...|++++|+..+.+++..... .++.++|.++...|++++|+.+|++|+.+.|..
T Consensus 120 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--------~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~------ 185 (497)
T d1ya0a1 120 RVKSSQLGIISNKQTHTSAIVKPQSSSCSYICQ--------HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSN------ 185 (497)
T ss_dssp -----------------------CCHHHHHHHH--------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTB------
T ss_pred HHHHHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--------HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCc------
Confidence 667889999999999999999999988876542 378889999999999999999999999998875
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
+.+++.||.++...|++.+|+.+|.+|+.+.+. ...++.+|+.++....
T Consensus 186 ~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~------~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 186 GQPYNQLAILASSKGDHLTTIFYYCRSIAVKFP------FPAASTNLQKALSKAL 234 (497)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBC------CHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCC------CHHHHHHHHHHHHHhh
Confidence 668899999999999999999999999865433 2446777777666543
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.39 E-value=2.5e-12 Score=117.05 Aligned_cols=136 Identities=21% Similarity=0.169 Sum_probs=117.0
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
..+.++.+|..+...|+|++|+..|.++ .+.+ +.+++++|.+|..+|++++|+.+|++++++ .+..+
T Consensus 4 ~~~~l~~~g~~~~~~~d~~~Al~~~~~i---~~~~----~~~~~nlG~~~~~~g~~~~A~~~~~kAl~l------dp~~~ 70 (192)
T d1hh8a_ 4 EAISLWNEGVLAADKKDWKGALDAFSAV---QDPH----SRICFNIGCMYTILKNMTEAEKAFTRSINR------DKHLA 70 (192)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHTS---SSCC----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHhc---CCCC----HHHHHHHHHHHHHcCCchhHHHHHHHHHHH------hhhhh
Confidence 3456778899999999999999999864 3333 347899999999999999999999999999 88899
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCch
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN----------DKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPE 170 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~----------d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~ 170 (609)
.+++++|.++..+|++++|+..|++++...+... .......+++++|.++...|+
T Consensus 71 ~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~--------------- 135 (192)
T d1hh8a_ 71 VAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE--------------- 135 (192)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC---------------
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCC---------------
Confidence 9999999999999999999999999998654321 112346788999999999999
Q ss_pred HhHHhHHHHHHHHHHHHHH
Q psy10738 171 EVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 171 ~~~~~~~~A~~~~~~al~~ 189 (609)
+++|++.+.+++.+
T Consensus 136 -----~~~A~~~l~~A~~~ 149 (192)
T d1hh8a_ 136 -----WKKAEEQLALATSM 149 (192)
T ss_dssp -----HHHHHHHHHHHHTT
T ss_pred -----HHHHHHHHHHHHhc
Confidence 99999999988876
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=3e-12 Score=106.36 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=98.9
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-++..+|..++..|+|++|+.+|.++++.+|.++. +|..+|.+|..+|++++|+..+.+++.+ .+....+
T Consensus 4 ~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~~------~p~~~~~ 73 (117)
T d1elwa_ 4 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV----LYSNRSAAYAKKGDYQKAYEDGCKTVDL------KPDWGKG 73 (117)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchh----hhhcccccccccccccccchhhhhHHHh------ccchhhH
Confidence 35667899999999999999999999999999854 8999999999999999999999999999 7888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNV 149 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~ 149 (609)
++++|.++..+|++++|+.+|++++++.+ ....++..++.+
T Consensus 74 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~p------~~~~~~~~l~~l 114 (117)
T d1elwa_ 74 YSRKAAALEFLNRFEEAKRTYEEGLKHEA------NNPQLKEGLQNM 114 (117)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTCT------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHH
Confidence 99999999999999999999999998766 334455555554
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.37 E-value=1.1e-11 Score=108.98 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.+..+|..++..|+|++|+.+|+++++++|++. .+|..+|.+|..+|++++|+..|++++++ .+....+
T Consensus 11 ~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~----~~~~~lg~~~~~~~~~~~A~~~~~kal~~------~p~~~~a 80 (159)
T d1a17a_ 11 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNA----IYYGNRSLAYLRTECYGYALGDATRAIEL------DKKYIKG 80 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHhhhccccchhhh----hhhhhhHHHHHhccccchHHHHHHHHHHH------cccchHH
Confidence 3566679999999999999999999999999984 48999999999999999999999999999 8889999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVY 150 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~ 150 (609)
+..+|.++..+|++++|+.++++++.+.+ ....++..++.+.
T Consensus 81 ~~~~g~~~~~~g~~~eA~~~~~~a~~~~p------~~~~~~~~l~~~~ 122 (159)
T d1a17a_ 81 YYRRAASNMALGKFRAALRDYETVVKVKP------HDKDAKMKYQECN 122 (159)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHH
Confidence 99999999999999999999999999866 2234455555544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.33 E-value=5.3e-12 Score=114.89 Aligned_cols=135 Identities=18% Similarity=0.102 Sum_probs=113.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQ 281 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 281 (609)
.+.+.|..+...|+|++|+..|.++. ++. +.+++++|.+|..+|++++|+.+|++++++.+.. +.
T Consensus 7 ~l~~~g~~~~~~~d~~~Al~~~~~i~-------~~~--~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~------~~ 71 (192)
T d1hh8a_ 7 SLWNEGVLAADKKDWKGALDAFSAVQ-------DPH--SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHL------AV 71 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS-------SCC--HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC------HH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHhcC-------CCC--HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhh------hh
Confidence 45577999999999999999997632 111 3478999999999999999999999999987764 78
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc----------hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Q psy10738 282 ACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD----------RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISK 351 (609)
Q Consensus 282 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~----------~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~ 351 (609)
+++++|.+|..+|++++|+..|++++...+.... ......+++++|.++..+|++++|...+.+|+.+..
T Consensus 72 a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 72 AYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999976543211 123467889999999999999999999999887653
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.30 E-value=7.7e-11 Score=103.14 Aligned_cols=133 Identities=14% Similarity=0.091 Sum_probs=101.3
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhCC------hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Q psy10738 200 GRACGNL--GNTYYLLGNFKQAIYYHQERLKIAREFGD------KAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQ 271 (609)
Q Consensus 200 ~~~~~~l--g~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 271 (609)
+.++..+ |..++..|+|++|+..|++++++.+..++ ....+.+|.++|.+|..+|++++|+..+++++.+.+
T Consensus 7 a~a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~ 86 (156)
T d2hr2a1 7 VGAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFN 86 (156)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccc
Confidence 3344444 88888999999999999999999988654 234567899999999999999999999999999988
Q ss_pred HcCC-----cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchh-hHHHHHHHHHHHHHH
Q psy10738 272 DLGD-----RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRV-GEGRACWSLGNAHAA 332 (609)
Q Consensus 272 ~~~~-----~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~~La~~~~~ 332 (609)
.... ......+++++|.+|..+|++++|+.+|++++++.++..+.. ........++..+..
T Consensus 87 ~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~ 153 (156)
T d2hr2a1 87 RRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQ 153 (156)
T ss_dssp HHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHH
T ss_pred ccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHH
Confidence 7533 234556788899999999999999999999999988765532 233333344444333
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=99.28 E-value=1.2e-10 Score=101.92 Aligned_cols=133 Identities=17% Similarity=0.139 Sum_probs=107.7
Q ss_pred HHHH--HHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHh
Q psy10738 242 ANSN--LGNSHIFLGEYQAASEHYKRTLVLAQDLGD------RAVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQL 313 (609)
Q Consensus 242 ~~~~--la~~~~~~g~~~~A~~~~~~al~~~~~~~~------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 313 (609)
++.. .|..++..|+|++|+..|++++++.+...+ ....+.++.++|.+|..+|++++|+..+++++.+.+..
T Consensus 9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~ 88 (156)
T d2hr2a1 9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR 88 (156)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence 4444 488899999999999999999999987653 23457789999999999999999999999999998875
Q ss_pred cc-----hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCc-hHHHHHHHHHHHHHHcC
Q psy10738 314 MD-----RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPL-GQVTAQMNVTDLRKALG 374 (609)
Q Consensus 314 ~~-----~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~-~~~~a~~~la~l~~~~g 374 (609)
.. ......++.++|.+|..+|++++|+.+|++|+++..+..... ........+++-+..+|
T Consensus 89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~~~~~~~~~~~~~~~~~~l~~lg 155 (156)
T d2hr2a1 89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRIAQLG 155 (156)
T ss_dssp CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHHHHHH
T ss_pred ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHhhchHHHHHHHHHHHHHHHHHcC
Confidence 43 334566889999999999999999999999999999886654 34444555555555443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.27 E-value=1.4e-11 Score=112.59 Aligned_cols=102 Identities=22% Similarity=0.261 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 23 LELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 23 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
-.+...|..++..|+|++|+.+|++|++.+|.++ .+|..+|.+|...|++++|+.+|++++++ .|..+.+
T Consensus 5 ~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~----~~~~~lg~~y~~~~~~~~Ai~~~~~al~l------~p~~~~a 74 (201)
T d2c2la1 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA----VYYTNRALCYLKMQQPEQALADCRRALEL------DGQSVKA 74 (201)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH----HHHHHHHHHHHHTTCHHHHHHHHHHHTTS------CTTCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH----HHHHhHHHHHhhhhhhhhhhHHHHHHHHh------CCCcHHH
Confidence 3566789999999999999999999999999985 48999999999999999999999999998 7888999
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEISRQLN 134 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~ 134 (609)
|+++|.+|..+|++++|+.+|++++.+.+...
T Consensus 75 ~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 75 HFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 99999999999999999999999999988654
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.24 E-value=8.2e-10 Score=105.47 Aligned_cols=226 Identities=20% Similarity=0.319 Sum_probs=163.9
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 61 AIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDK 136 (609)
Q Consensus 61 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~ 136 (609)
.+++.||..++..+++.+|+++|+++.+. ..+.+++.||.+|.. ..++..|..++..+...
T Consensus 3 ~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--------g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~------- 67 (265)
T d1ouva_ 3 KELVGLGAKSYKEKDFTQAKKYFEKACDL--------KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL------- 67 (265)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-------
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc-------
Confidence 47899999999999999999999998654 345789999999987 66899999998886653
Q ss_pred HHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----
Q psy10738 137 LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL---- 212 (609)
Q Consensus 137 ~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~---- 212 (609)
....+...+|.++...... ..+...|...++.+... +. ..+...+|..+..
T Consensus 68 -~~~~a~~~l~~~~~~~~~~----------------~~~~~~a~~~~~~a~~~----g~----~~a~~~l~~~~~~~~~~ 122 (265)
T d1ouva_ 68 -NYSNGCHLLGNLYYSGQGV----------------SQNTNKALQYYSKACDL----KY----AEGCASLGGIYHDGKVV 122 (265)
T ss_dssp -TCHHHHHHHHHHHHHTSSS----------------CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHCSSS
T ss_pred -cccchhhcccccccccccc----------------chhhHHHHHHHhhhhhh----hh----hhHHHhhcccccCCCcc
Confidence 2245667788877653220 00178888888877643 22 2345666766665
Q ss_pred cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHh----CCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 213 LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFL----GEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGN 288 (609)
Q Consensus 213 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~----g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 288 (609)
......|...+.+.... .+ ..++..+|.++... .+...+..+++.+.+ .++ ..+++.+|.
T Consensus 123 ~~~~~~a~~~~~~~~~~----~~----~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~----~~A~~~lg~ 186 (265)
T d1ouva_ 123 TRDFKKAVEYFTKACDL----ND----GDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKD----SPGCFNAGN 186 (265)
T ss_dssp CCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHH
T ss_pred cchhHHHHHHhhhhhcc----cc----cchhhhhhhhhccCCCcccccccchhhhhcccc----ccc----cccccchhh
Confidence 44566777766664432 22 23678889998863 455666666666543 333 668899999
Q ss_pred HHHH----hCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHH----cCChHHHHHHHHHHHHHH
Q psy10738 289 TYTL----LRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAA----RGNHEKALYFATKHLEIS 350 (609)
Q Consensus 289 ~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~----~g~~~~A~~~~~~al~l~ 350 (609)
+|.. ..++++|+.+|.++.+. + ...+++.||.+|.. ..++.+|+.+|++|.+.-
T Consensus 187 ~y~~g~~~~~d~~~A~~~~~~aa~~----g----~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g 248 (265)
T d1ouva_ 187 MYHHGEGATKNFKEALARYSKACEL----E----NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 248 (265)
T ss_dssp HHHHTCSSCCCHHHHHHHHHHHHHT----T----CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred hcccCcccccchhhhhhhHhhhhcc----c----CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCc
Confidence 9987 67999999999998654 2 25588999999986 448999999999998753
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.24 E-value=7.8e-11 Score=103.48 Aligned_cols=98 Identities=22% Similarity=0.306 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSE 139 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~ 139 (609)
+..+...|+.|+..|+|++|+.+|++++.+ .|....+|.++|.++..+|++++|+.+|++++++.+ ..
T Consensus 10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~------~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p------~~ 77 (159)
T d1a17a_ 10 AEELKTQANDYFKAKDYENAIKFYSQAIEL------NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDK------KY 77 (159)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhhhcccc------chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcc------cc
Confidence 455677888888888888888888888888 777888888888888888888888888888888866 55
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
..++..+|.++..+|+ +++|+..+++++.+
T Consensus 78 ~~a~~~~g~~~~~~g~--------------------~~eA~~~~~~a~~~ 107 (159)
T d1a17a_ 78 IKGYYRRAASNMALGK--------------------FRAALRDYETVVKV 107 (159)
T ss_dssp HHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHc
Confidence 6788888888888888 88888888888877
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.21 E-value=2.3e-10 Score=101.54 Aligned_cols=122 Identities=12% Similarity=0.103 Sum_probs=104.1
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-----------hhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTDD-----------LRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLA 90 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~-----------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 90 (609)
+..+-..|..++..|+|++|+..|++++...+.. ......++.++|.+|..+|++++|+.++++++.+
T Consensus 13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~- 91 (170)
T d1p5qa1 13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL- 91 (170)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhc-
Confidence 3445567999999999999999999999986632 1234567889999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 91 RNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 91 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
.|..+.+++.+|.+|..+|++++|+.+|++++++.| ....+...++.+....+.
T Consensus 92 -----~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P------~n~~~~~~l~~~~~~~~~ 145 (170)
T d1p5qa1 92 -----DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP------NNKAAKTQLAVCQQRIRR 145 (170)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------SCHHHHHHHHHHHHHHHH
T ss_pred -----cccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHH
Confidence 888899999999999999999999999999999876 334567778877776665
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.19 E-value=3.1e-10 Score=95.53 Aligned_cols=103 Identities=19% Similarity=0.291 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME-DKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-d~~~~~~a 102 (609)
..-..|..++..|+|++|+.+|+++++++|.+.. ++.++|.+|..+|+|++|+..+++++++.+... .....+.+
T Consensus 6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~----~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~ 81 (128)
T d1elra_ 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT----YITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKA 81 (128)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH----HHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 4445699999999999999999999999998844 899999999999999999999999999977654 34556889
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEIS 130 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~ 130 (609)
+..+|.++..++++++|+.+|++++...
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~~~ 109 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLAEH 109 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHhcC
Confidence 9999999999999999999999998753
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=2.8e-10 Score=95.82 Aligned_cols=104 Identities=21% Similarity=0.360 Sum_probs=95.1
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc-HH
Q psy10738 60 SAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK-LS 138 (609)
Q Consensus 60 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~-~~ 138 (609)
+..+..+|+.++..|+|++|+.+|.+++++ .|....++.++|.+|..+|+|++|+..+++++++.+..... ..
T Consensus 4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~ 77 (128)
T d1elra_ 4 ALKEKELGNDAYKKKDFDTALKHYDKAKEL------DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQ 77 (128)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHH
Confidence 456788999999999999999999999999 77788999999999999999999999999999999987654 46
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
.+.++..+|.++...++ +++|+.+|++++..
T Consensus 78 ~a~~~~~lg~~~~~~~~--------------------~~~A~~~~~kal~~ 108 (128)
T d1elra_ 78 IAKAYARIGNSYFKEEK--------------------YKDAIHFYNKSLAE 108 (128)
T ss_dssp HHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--------------------HHHHHHHHHHHHhc
Confidence 68899999999999999 99999999999865
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.18 E-value=8.1e-11 Score=97.47 Aligned_cols=111 Identities=17% Similarity=0.198 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
-+...|..++..|+|++|+.+|.+++.. .|..+.++.++|.+|..+|++++|+..+.+++.+.+ ....
T Consensus 5 ~l~~~g~~~~~~g~~~eAi~~~~~al~~------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p------~~~~ 72 (117)
T d1elwa_ 5 ELKEKGNKALSVGNIDDALQCYSEAIKL------DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP------DWGK 72 (117)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT------TCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhc------CCcchhhhhcccccccccccccccchhhhhHHHhcc------chhh
Confidence 3567899999999999999999999999 888899999999999999999999999999999877 5667
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY 210 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 210 (609)
+++++|.++..+|+ +++|+..|++++++ .+....++..++.+.
T Consensus 73 ~~~~~g~~~~~~~~--------------------~~~A~~~~~~a~~~------~p~~~~~~~~l~~l~ 115 (117)
T d1elwa_ 73 GYSRKAAALEFLNR--------------------FEEAKRTYEEGLKH------EANNPQLKEGLQNME 115 (117)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHTT------CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHHh
Confidence 99999999999999 99999999999987 233345555665543
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.17 E-value=2.9e-11 Score=110.46 Aligned_cols=103 Identities=23% Similarity=0.218 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEA 179 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A 179 (609)
+..+...|+.++..|+|++|+.+|.+++.+.| ..+.+|.++|.+|...|+ +++|
T Consensus 4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p------~~~~~~~~lg~~y~~~~~--------------------~~~A 57 (201)
T d2c2la1 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNP------LVAVYYTNRALCYLKMQQ--------------------PEQA 57 (201)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS------CCHHHHHHHHHHHHHTTC--------------------HHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHhHHHHHhhhhh--------------------hhhh
Confidence 34455667777777777777777777766654 345566677777777777 7777
Q ss_pred HHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC
Q psy10738 180 IKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFG 234 (609)
Q Consensus 180 ~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 234 (609)
+.+|++++++ .+....+|.++|.+|..+|++++|+.+|++++.+.+...
T Consensus 58 i~~~~~al~l------~p~~~~a~~~lg~~~~~l~~~~~A~~~~~~al~l~p~~~ 106 (201)
T d2c2la1 58 LADCRRALEL------DGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQR 106 (201)
T ss_dssp HHHHHHHTTS------CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred hHHHHHHHHh------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH
Confidence 7777776655 344455667777777777777777777777777666543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.16 E-value=1.1e-10 Score=95.73 Aligned_cols=92 Identities=14% Similarity=0.065 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 26 ALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 26 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+..|..++..|++++|+..|++++..+|+++ .+|..+|.++...|++++|+.++++++++ .|....++..
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~----~a~~~lg~~~~~~~~~~~A~~~~~~al~~------~p~~~~a~~~ 89 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPERE----EAWRSLGLTQAENEKDGLAIIALNHARML------DPKDIAVHAA 89 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH----HHHHHHHHHHHHTTCHHHHHHHHHHHHHH------CTTCHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccc----hhhhhhhhhhhhhhhHHHhhccccccccc------ccccccchHH
Confidence 4469999999999999999999999999884 48999999999999999999999999999 8888999999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHL 127 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al 127 (609)
+|.+|...|++++|++++++.+
T Consensus 90 la~~y~~~g~~~~A~~~l~~~l 111 (112)
T d1hxia_ 90 LAVSHTNEHNANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHh
Confidence 9999999999999999999875
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.16 E-value=3.1e-10 Score=98.80 Aligned_cols=121 Identities=14% Similarity=0.119 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcch------------hHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDL------------RTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLT 88 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 88 (609)
.+..+...|..++..|+|.+|+..|++|+...+... .....++.++|.+|+.+|++++|+.++++++.
T Consensus 16 ~a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~ 95 (153)
T d2fbna1 16 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLK 95 (153)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccc
Confidence 344566689999999999999999999998754211 12345788999999999999999999999999
Q ss_pred HHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHc
Q psy10738 89 LARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAK 153 (609)
Q Consensus 89 ~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~ 153 (609)
+ .|....+++++|.+|..+|++++|+.+|++++++.| ....+...++.+...+
T Consensus 96 ~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P------~n~~~~~~l~~~~~kl 148 (153)
T d2fbna1 96 I------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNP------NNLDIRNSYELCVNKL 148 (153)
T ss_dssp H------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST------TCHHHHHHHHHHHHHH
T ss_pred c------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHH
Confidence 9 888899999999999999999999999999999977 3344555666655443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.15 E-value=2.7e-10 Score=101.13 Aligned_cols=92 Identities=21% Similarity=0.273 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC---------hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 58 TLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMED---------KLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLE 128 (609)
Q Consensus 58 ~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d---------~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 128 (609)
..+..+...|..++..|+|++|+..|++++.+...... ......++.++|.+|..+|++++|+.++++++.
T Consensus 11 ~~a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~ 90 (170)
T d1p5qa1 11 EQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 90 (170)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhh
Confidence 34667778899999999999999999999887543321 112233444555555555555555555555555
Q ss_pred HHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 129 ISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 129 l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
+.| ....+++.+|.+|..+|+
T Consensus 91 ~~p------~~~~a~~~~g~~~~~~g~ 111 (170)
T d1p5qa1 91 LDS------NNEKGLSRRGEAHLAVND 111 (170)
T ss_dssp HCT------TCHHHHHHHHHHHHHTTC
T ss_pred ccc------cchhhhHHHHHHHHHhhh
Confidence 433 234455555555555555
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=99.14 E-value=3.6e-09 Score=100.85 Aligned_cols=223 Identities=20% Similarity=0.298 Sum_probs=163.0
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHHHHHcCChhhHH
Q psy10738 25 LALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY----LGDYQKAMQYHKQDLTLARNMEDKLGEA 100 (609)
Q Consensus 25 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~d~~~~~ 100 (609)
++..|..++..||+.+|+.+|++|.+.+ + ..+++.||.+|.. ..++..|..+++.+... ...
T Consensus 5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g--~----~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~--------~~~ 70 (265)
T d1ouva_ 5 LVGLGAKSYKEKDFTQAKKYFEKACDLK--E----NSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDL--------NYS 70 (265)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTT--C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHCC--C----HHHHHHHHHHHHcCCCcchhHHHHHHhhcccccc--------ccc
Confidence 4455899999999999999999998864 3 3478899999987 66899999999887654 244
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhH
Q psy10738 101 KSSGNLGNTLKV----MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCL 176 (609)
Q Consensus 101 ~a~~~lg~~~~~----~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 176 (609)
.+...+|.++.. ..+.+.|..+++++.+. ....+...+|..+...... ....
T Consensus 71 ~a~~~l~~~~~~~~~~~~~~~~a~~~~~~a~~~--------g~~~a~~~l~~~~~~~~~~----------------~~~~ 126 (265)
T d1ouva_ 71 NGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL--------KYAEGCASLGGIYHDGKVV----------------TRDF 126 (265)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSSS----------------CCCH
T ss_pred chhhccccccccccccchhhHHHHHHHhhhhhh--------hhhhHHHhhcccccCCCcc----------------cchh
Confidence 667788888765 46788999999887653 2234566777776653220 0015
Q ss_pred HHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHH
Q psy10738 177 QEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYL----LGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIF 252 (609)
Q Consensus 177 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~ 252 (609)
..|...+.+.... + ...++.++|.+|.. ..+...+..+++.+.+ .++ ..+.+++|.+|..
T Consensus 127 ~~a~~~~~~~~~~----~----~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~----~g~----~~A~~~lg~~y~~ 190 (265)
T d1ouva_ 127 KKAVEYFTKACDL----N----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACD----LKD----SPGCFNAGNMYHH 190 (265)
T ss_dssp HHHHHHHHHHHHT----T----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH----TTC----HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcc----c----ccchhhhhhhhhccCCCcccccccchhhhhcccc----ccc----cccccchhhhccc
Confidence 6666666654432 2 23467889999886 4456667777666553 333 2378899999987
Q ss_pred ----hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q psy10738 253 ----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII 309 (609)
Q Consensus 253 ----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 309 (609)
..++++|+.+|+++.+. ++ ..+++.||.+|.. ..++++|+.+|++|...
T Consensus 191 g~~~~~d~~~A~~~~~~aa~~----g~----~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~ 247 (265)
T d1ouva_ 191 GEGATKNFKEALARYSKACEL----EN----GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKL 247 (265)
T ss_dssp TCSSCCCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHH
T ss_pred CcccccchhhhhhhHhhhhcc----cC----HHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHC
Confidence 67999999999998664 22 5688999999986 44899999999999765
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.09 E-value=8.1e-10 Score=97.76 Aligned_cols=122 Identities=17% Similarity=0.171 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCc-----------chhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Q psy10738 22 CLELALEGERLCKAGDCRAGVAFFQAAIQAGTD-----------DLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLA 90 (609)
Q Consensus 22 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-----------~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 90 (609)
+-.+-..|..++..|+|.+|+..|.+|+...+. .......++.++|.+|..+|++++|+.++++++.+
T Consensus 15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l- 93 (168)
T d1kt1a1 15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL- 93 (168)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc-
Confidence 344555699999999999999999999986432 12235567889999999999999999999999999
Q ss_pred HHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHccc
Q psy10738 91 RNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 91 ~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
.|....+++++|.+|..+|++++|+.+|.+++.+.| ....+...++.+....+.
T Consensus 94 -----~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P------~n~~~~~~l~~~~~~~~~ 147 (168)
T d1kt1a1 94 -----DSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP------QNKAARLQIFMCQKKAKE 147 (168)
T ss_dssp -----CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT------TCHHHHHHHHHHHHHHHH
T ss_pred -----ccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHHHh
Confidence 788899999999999999999999999999998866 334567777777766665
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.08 E-value=4.4e-10 Score=99.65 Aligned_cols=86 Identities=16% Similarity=0.098 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 276 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 276 (609)
+....++.++|.+|..+|++++|+.++.+++++.+... .+++++|.+|..+|++++|+..|++++++.+..
T Consensus 74 ~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~------~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n--- 144 (169)
T d1ihga1 74 PVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT------KALYRRAQGWQGLKEYDQALADLKKAQEIAPED--- 144 (169)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC---
T ss_pred hhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhh------hHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCC---
Confidence 33455666777777777777777777777766544322 366777777777777777777777777665432
Q ss_pred HHHHHHHHHHHHHHHHhC
Q psy10738 277 AVEAQACYSLGNTYTLLR 294 (609)
Q Consensus 277 ~~~~~~~~~la~~~~~~g 294 (609)
..+...++.++....
T Consensus 145 ---~~~~~~l~~~~~~l~ 159 (169)
T d1ihga1 145 ---KAIQAELLKVKQKIK 159 (169)
T ss_dssp ---HHHHHHHHHHHHHHH
T ss_pred ---HHHHHHHHHHHHHHH
Confidence 334444555544433
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=99.04 E-value=6e-10 Score=91.29 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
..+.+|.+++..|++++|+..+++++.. .|..+.++..+|.++...|++++|+.++++++++.+ ....
T Consensus 18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~------~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p------~~~~ 85 (112)
T d1hxia_ 18 NPMEEGLSMLKLANLAEAALAFEAVCQK------EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP------KDIA 85 (112)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHhhhccc------ccccchhhhhhhhhhhhhhhHHHhhccccccccccc------cccc
Confidence 4578899999999999999999999999 788899999999999999999999999999999977 5678
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
++..+|.+|...|+ +++|++++++.+
T Consensus 86 a~~~la~~y~~~g~--------------------~~~A~~~l~~~l 111 (112)
T d1hxia_ 86 VHAALAVSHTNEHN--------------------ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHHHH--------------------HHHHHHHHHHHH
T ss_pred chHHHHHHHHHCCC--------------------HHHHHHHHHHHh
Confidence 99999999999999 999999999865
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=99.03 E-value=1.9e-09 Score=95.33 Aligned_cols=126 Identities=17% Similarity=0.190 Sum_probs=81.1
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC---------ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q psy10738 59 LSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME---------DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEI 129 (609)
Q Consensus 59 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~---------d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 129 (609)
.+..+...|+.++..|+|.+|+.+|.+++....... .......++.++|.+|..+|++++|+.++++++.+
T Consensus 14 ~a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l 93 (168)
T d1kt1a1 14 QAAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 93 (168)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhc
Confidence 356778899999999999999999999998754321 12223455666666666666666666666666666
Q ss_pred HHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Q psy10738 130 SRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNT 209 (609)
Q Consensus 130 ~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~ 209 (609)
.+ ....+++++|.+|..+|+ |++|+..|++++.+ .|....+...++.+
T Consensus 94 ~p------~~~~a~~~~~~~~~~l~~--------------------~~~A~~~~~~al~l------~P~n~~~~~~l~~~ 141 (168)
T d1kt1a1 94 DS------ANEKGLYRRGEAQLLMNE--------------------FESAKGDFEKVLEV------NPQNKAARLQIFMC 141 (168)
T ss_dssp CT------TCHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHS------CTTCHHHHHHHHHH
T ss_pred cc------chHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHh------CCCCHHHHHHHHHH
Confidence 44 345566666666666666 66666666666655 22223445555555
Q ss_pred HHHcCCH
Q psy10738 210 YYLLGNF 216 (609)
Q Consensus 210 ~~~~g~~ 216 (609)
....+.+
T Consensus 142 ~~~~~~~ 148 (168)
T d1kt1a1 142 QKKAKEH 148 (168)
T ss_dssp HHHHHHH
T ss_pred HHHHHhH
Confidence 4444433
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=99.02 E-value=5e-10 Score=97.43 Aligned_cols=107 Identities=19% Similarity=0.145 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----------HHHHHHHHHHHHHHHHcccccccCCCCCCCCCc
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDK----------LSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYP 169 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~----------~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~ 169 (609)
+..+...|..++..|+|.+|+..|.+++.+.+..... .....++.++|.+|..+|+
T Consensus 17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~-------------- 82 (153)
T d2fbna1 17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKD-------------- 82 (153)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTC--------------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcc--------------
Confidence 3444455666666666666666666666544322211 1223466778888888887
Q ss_pred hHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 170 EEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIARE 232 (609)
Q Consensus 170 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 232 (609)
+++|+.++.+++++ .+....+++++|.+|..+|++++|+.+|++++++.|.
T Consensus 83 ------~~~Al~~~~~al~~------~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~ 133 (153)
T d2fbna1 83 ------YPKAIDHASKVLKI------DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPN 133 (153)
T ss_dssp ------HHHHHHHHHHHHHH------STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT
T ss_pred ------cchhhhhhhccccc------cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 78888888887776 3444567788888888888888888888887777654
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.01 E-value=1.7e-09 Score=95.68 Aligned_cols=87 Identities=20% Similarity=0.289 Sum_probs=41.8
Q ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHc----------CChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q psy10738 63 YSQLGNAYFYLGDYQKAMQYHKQDLTLARNM----------EDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQ 132 (609)
Q Consensus 63 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----------~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 132 (609)
+...|..++..|+|.+|+..|.+++.+.... .-.+..+.++.++|.+|..+|++++|+.+|.+++++.+
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p- 108 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP- 108 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhhhh-
Confidence 4455666666677777776666666553211 01222333444444444444444444444444444332
Q ss_pred cCCcHHHHHHHHHHHHHHHHccc
Q psy10738 133 LNDKLSEGRALYNLGNVYHAKGK 155 (609)
Q Consensus 133 ~~d~~~~~~~~~~lg~~~~~~g~ 155 (609)
..+.+++++|.+|..+|+
T Consensus 109 -----~~~~a~~~~g~~~~~l~~ 126 (169)
T d1ihga1 109 -----SNTKALYRRAQGWQGLKE 126 (169)
T ss_dssp -----TCHHHHHHHHHHHHHTTC
T ss_pred -----hhhhHHHhHHHHHHHccC
Confidence 223344444444444444
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.00 E-value=5e-10 Score=93.05 Aligned_cols=110 Identities=15% Similarity=0.021 Sum_probs=89.3
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh---CCHHHHHHHHHHHHHHHHHcCChhhHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL---GDYQKAMQYHKQDLTLARNMEDKLGEAKSSGN 105 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~---g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~ 105 (609)
+..+...+++++|++.|++++..+|.++. +++++|.++... +++++|+..+++++.. ...+....++++
T Consensus 6 ~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~----~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~----~~~~~~~~~~~~ 77 (122)
T d1nzna_ 6 LNELVSVEDLLKFEKKFQSEKAAGSVSKS----TQFEYAWCLVRTRYNDDIRKGIVLLEELLPK----GSKEEQRDYVFY 77 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHSCCCHH----HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTT----SCHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCCHH----HHHHHHHHHHHhcchHHHHHHHHHHHHHHhc----cCCchHHHHHHH
Confidence 55678889999999999999999999855 889999999864 4566799999988765 223445679999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH
Q psy10738 106 LGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHA 152 (609)
Q Consensus 106 lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~ 152 (609)
+|.+|..+|++++|+.+|++++++.| ....+...++.+...
T Consensus 78 Lg~~y~~~g~~~~A~~~~~~aL~~~P------~~~~A~~l~~~I~~~ 118 (122)
T d1nzna_ 78 LAVGNYRLKEYEKALKYVRGLLQTEP------QNNQAKELERLIDKA 118 (122)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhCc------CCHHHHHHHHHHHHH
Confidence 99999999999999999999999877 334566666655544
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=4e-09 Score=103.13 Aligned_cols=140 Identities=9% Similarity=-0.048 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH-HhCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 202 ACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI-FLGEYQAASEHYKRTLVLAQDLGDRAVEA 280 (609)
Q Consensus 202 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 280 (609)
++...+......|+++.|...|++++...+.... .+...|.... ..|+.+.|...|++++...+.. .
T Consensus 136 ~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~------~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~ 203 (308)
T d2onda1 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHH------VYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------P 203 (308)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTH------HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------H
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHH------HHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh------H
Confidence 3444444555555555555555555544332221 3333343322 2355566666666666554332 3
Q ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCC
Q psy10738 281 QACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGD 355 (609)
Q Consensus 281 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~ 355 (609)
..+...+..+...|+++.|...|++++...+.... ....++..........|+.+.+...++++.+++.+...
T Consensus 204 ~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~--~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~~~ 276 (308)
T d2onda1 204 EYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPE--KSGEIWARFLAFESNIGDLASILKVEKRRFTAFREEYE 276 (308)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGG--GCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTTTS
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH--HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccccc
Confidence 44555555666666666666666666654432211 11234455555555666666666666666666665543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.98 E-value=2.4e-08 Score=97.33 Aligned_cols=153 Identities=8% Similarity=-0.082 Sum_probs=112.1
Q ss_pred HHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCC
Q psy10738 176 LQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGE 255 (609)
Q Consensus 176 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 255 (609)
.++|...|++++... .+.....+...+.++...|+++.|...|++++...+... ..++..++......|+
T Consensus 80 ~~~a~~i~~ral~~~-----~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~-----~~~w~~~~~~~~~~~~ 149 (308)
T d2onda1 80 SDEAANIYERAISTL-----LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----TLVYIQYMKFARRAEG 149 (308)
T ss_dssp HHHHHHHHHHHHTTT-----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCT-----HHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHc-----CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCCh-----HHHHHHHHHHHHHcCC
Confidence 778888888887642 122334677778888889999999999998887533221 1256777788888899
Q ss_pred HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH-HHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcC
Q psy10738 256 YQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTY-TLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARG 334 (609)
Q Consensus 256 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~-~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g 334 (609)
++.|...|++++...+.. ...+...|... ...|+.+.|...|++++...+.. ...+...+..+...|
T Consensus 150 ~~~ar~i~~~al~~~~~~------~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~------~~~w~~y~~~~~~~g 217 (308)
T d2onda1 150 IKSGRMIFKKAREDARTR------HHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDI------PEYVLAYIDYLSHLN 217 (308)
T ss_dssp HHHHHHHHHHHHTSTTCC------THHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTC------HHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhh------HHHHHHHHHHHHHcC
Confidence 999999999988766543 33445555554 34688899999999998875542 447788888888999
Q ss_pred ChHHHHHHHHHHHHHH
Q psy10738 335 NHEKALYFATKHLEIS 350 (609)
Q Consensus 335 ~~~~A~~~~~~al~l~ 350 (609)
+++.|...|++++...
T Consensus 218 ~~~~aR~~fe~ai~~~ 233 (308)
T d2onda1 218 EDNNTRVLFERVLTSG 233 (308)
T ss_dssp CHHHHHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHhC
Confidence 9999999999988754
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.87 E-value=2.6e-09 Score=91.78 Aligned_cols=107 Identities=12% Similarity=0.057 Sum_probs=85.4
Q ss_pred HHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHh----------CCHHHHHHHHHHHHHHHHHcCChhhHHH
Q psy10738 32 LCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYL----------GDYQKAMQYHKQDLTLARNMEDKLGEAK 101 (609)
Q Consensus 32 ~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~----------g~~~~A~~~~~~al~~~~~~~d~~~~~~ 101 (609)
+-+.+.|++|+..|+++++.+|++.. +++.+|.++... +.+++|+..|++++++ .|..+.
T Consensus 7 ~~r~~~fe~A~~~~e~al~~~P~~~~----~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l------~P~~~~ 76 (145)
T d1zu2a1 7 FDRILLFEQIRQDAENTYKSNPLDAD----NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLI------DPKKDE 76 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH----HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHH------CTTCHH
T ss_pred HHHHccHHHHHHHHHHHHhhCCcchH----HHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHh------cchhhH
Confidence 44567799999999999999999954 889999998854 4568899999999999 888999
Q ss_pred HHHHHHHHHHHcCC-----------HHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcc
Q psy10738 102 SSGNLGNTLKVMGK-----------YDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKG 154 (609)
Q Consensus 102 a~~~lg~~~~~~g~-----------~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g 154 (609)
+++++|.+|..+|+ |.+|+.+|++++++.| ....++..|+.+....+
T Consensus 77 a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P------~~~~~~~~L~~~~ka~~ 134 (145)
T d1zu2a1 77 AVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQP------DNTHYLKSLEMTAKAPQ 134 (145)
T ss_dssp HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCT------TCHHHHHHHHHHHTHHH
T ss_pred HHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCC------CHHHHHHHHHHHHHHHH
Confidence 99999999988764 6888888888888876 33445555655444333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=3.3e-09 Score=87.91 Aligned_cols=95 Identities=13% Similarity=0.032 Sum_probs=56.7
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHcCCcHHHHH
Q psy10738 65 QLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMG---KYDEAMVCCKRHLEISRQLNDKLSEGR 141 (609)
Q Consensus 65 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g---~~~~A~~~~~~al~l~~~~~d~~~~~~ 141 (609)
.+++.+...+++++|.+.|++++.+ .|....+++++|.++...+ ++.+|+..+++++...+ ......
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~------~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~----~~~~~~ 73 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAA------GSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGS----KEEQRD 73 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH------SCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSC----HHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccC----CchHHH
Confidence 3455556666666666666666666 5666666666666665433 33456666665554221 123344
Q ss_pred HHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 142 ALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 142 ~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
+++++|.+|...|+ +++|+.+|++++++
T Consensus 74 ~~~~Lg~~y~~~g~--------------------~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 74 YVFYLAVGNYRLKE--------------------YEKALKYVRGLLQT 101 (122)
T ss_dssp HHHHHHHHHHHTTC--------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--------------------hHHHHHHHHHHHHh
Confidence 66666666666666 66666666666665
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.80 E-value=1.9e-08 Score=79.20 Aligned_cols=89 Identities=19% Similarity=0.140 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHcCCCch
Q psy10738 280 AQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMD-RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQLGDPLG 358 (609)
Q Consensus 280 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~ 358 (609)
+.-++.+|.++...|+|.+|+.+|++|+.+.+.... ....+.++.+||.++..+|++++|+.++++++++. |.
T Consensus 5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~------P~ 78 (95)
T d1tjca_ 5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD------PE 78 (95)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC------TT
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC------cC
Confidence 456789999999999999999999999998876533 34567889999999999999999999999999986 66
Q ss_pred HHHHHHHHHHHHHHcC
Q psy10738 359 QVTAQMNVTDLRKALG 374 (609)
Q Consensus 359 ~~~a~~~la~l~~~~g 374 (609)
...++.+++.+...++
T Consensus 79 ~~~a~~Nl~~~~~~l~ 94 (95)
T d1tjca_ 79 HQRANGNLKYFEYIMA 94 (95)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 6788888888776554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=98.79 E-value=5.5e-09 Score=89.68 Aligned_cols=115 Identities=16% Similarity=0.141 Sum_probs=90.6
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHHcCCcHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVM----------GKYDEAMVCCKRHLEISRQLNDKLS 138 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~----------g~~~~A~~~~~~al~l~~~~~d~~~ 138 (609)
.+..++.|++|+..|++++++ .|..+.+++++|.++... +.+++|+.+|++++++.| .
T Consensus 6 ~~~r~~~fe~A~~~~e~al~~------~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P------~ 73 (145)
T d1zu2a1 6 EFDRILLFEQIRQDAENTYKS------NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP------K 73 (145)
T ss_dssp SHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT------T
T ss_pred HHHHHccHHHHHHHHHHHHhh------CCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc------h
Confidence 355677899999999999999 899999999999999865 445789999999999876 5
Q ss_pred HHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHH
Q psy10738 139 EGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTY 210 (609)
Q Consensus 139 ~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~ 210 (609)
...+++++|.+|...|+. ..........|.+|+.+|++++++ .|....++..|+.+.
T Consensus 74 ~~~a~~~lG~~y~~~g~~---------~~~~~~~~~~~~~A~~~~~kal~l------~P~~~~~~~~L~~~~ 130 (145)
T d1zu2a1 74 KDEAVWCIGNAYTSFAFL---------TPDETEAKHNFDLATQFFQQAVDE------QPDNTHYLKSLEMTA 130 (145)
T ss_dssp CHHHHHHHHHHHHHHHHH---------CCCHHHHHHHHHHHHHHHHHHHHH------CTTCHHHHHHHHHHH
T ss_pred hhHHHhhHHHHHHHcccc---------hhhHHHHHHhHHHhhhhhhccccc------CCCHHHHHHHHHHHH
Confidence 677999999999998861 123445556688999999999887 344445666666654
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.75 E-value=2.4e-08 Score=78.68 Aligned_cols=86 Identities=21% Similarity=0.200 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcC-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHH
Q psy10738 62 IYSQLGNAYFYLGDYQKAMQYHKQDLTLARNME-DKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEG 140 (609)
Q Consensus 62 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~ 140 (609)
-++.+|.+++..|+|.+|+.+|++|+.+.+... .....+.++.++|.++...|++++|+.+|++++++.| ...
T Consensus 7 dc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P------~~~ 80 (95)
T d1tjca_ 7 DSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDP------EHQ 80 (95)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT------TCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCc------CCH
Confidence 456788888888888888888888887766432 2334567788888888888888888888888888766 344
Q ss_pred HHHHHHHHHHHHc
Q psy10738 141 RALYNLGNVYHAK 153 (609)
Q Consensus 141 ~~~~~lg~~~~~~ 153 (609)
.++.+++.+...+
T Consensus 81 ~a~~Nl~~~~~~l 93 (95)
T d1tjca_ 81 RANGNLKYFEYIM 93 (95)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 5777776655443
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.45 E-value=1.8e-06 Score=76.15 Aligned_cols=105 Identities=10% Similarity=-0.027 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcch------------------hHHHHHHHHHHHHHHHhCCHHHHHHH
Q psy10738 21 MCLELALEGERLCKAGDCRAGVAFFQAAIQAGTDDL------------------RTLSAIYSQLGNAYFYLGDYQKAMQY 82 (609)
Q Consensus 21 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~------------------~~~a~~~~~lg~~~~~~g~~~~A~~~ 82 (609)
.+..+...|..+...|++++|+..|.+|+.+.+++. .....++..++.++...|++++|+.+
T Consensus 10 ~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~ 89 (179)
T d2ff4a2 10 RFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAE 89 (179)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHH
Confidence 345667789999999999999999999999866432 12446788999999999999999999
Q ss_pred HHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 83 HKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 83 ~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
+++++.+ .|....+|..++.++...|++.+|+..|+++.....
T Consensus 90 ~~~al~~------~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~ 132 (179)
T d2ff4a2 90 LEALTFE------HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLA 132 (179)
T ss_dssp HHHHHHH------STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHh------CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 9999999 888999999999999999999999999999987765
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.23 E-value=8.6e-07 Score=83.57 Aligned_cols=128 Identities=13% Similarity=0.049 Sum_probs=102.5
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
+..++..|++++|+..|+++++.+|.+.. ++..+|.++...|++++|+..+++++++ .|....++..++.
T Consensus 3 ~~~aL~~G~l~eAl~~l~~al~~~P~d~~----ar~~La~lL~~~G~~e~A~~~l~~a~~l------~P~~~~~~~~l~~ 72 (264)
T d1zbpa1 3 WKNALSEGQLQQALELLIEAIKASPKDAS----LRSSFIELLCIDGDFERADEQLMQSIKL------FPEYLPGASQLRH 72 (264)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHH----HHHHHHHHHHHHTCHHHHHHHHHHHHHH------CGGGHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHCCCCHH----HHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCcHHHHHHHHH
Confidence 55678899999999999999999999954 8899999999999999999999999999 7888888888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLA 188 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 188 (609)
++...+...++...+.+.. ....+.....+...+.++...|+ +++|...+.++.+
T Consensus 73 ll~a~~~~~~a~~~~~~~~-----~~~~p~~~~~~l~~a~~~~~~gd--------------------~~~A~~~~~~a~e 127 (264)
T d1zbpa1 73 LVKAAQARKDFAQGAATAK-----VLGENEELTKSLVSFNLSMVSQD--------------------YEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHHHHHHTTSCCCEE-----CCCSCHHHHHHHHHHHHHHHHTC--------------------HHHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHhhhhh-----cccCchHHHHHHHHHHHHHhCCC--------------------HHHHHHHHHHHHh
Confidence 8876665555433322111 11122445677788999999999 9999999999887
Q ss_pred HHH
Q psy10738 189 LMK 191 (609)
Q Consensus 189 ~~~ 191 (609)
...
T Consensus 128 ~~p 130 (264)
T d1zbpa1 128 LRQ 130 (264)
T ss_dssp HCC
T ss_pred cCC
Confidence 743
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.16 E-value=8.6e-06 Score=71.69 Aligned_cols=133 Identities=15% Similarity=-0.079 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCc
Q psy10738 197 AAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDR 276 (609)
Q Consensus 197 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 276 (609)
......+...|......|++++|+..|.+++.+.+...... + ..+.+- ......+.+.
T Consensus 8 ~~~f~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~-----~~~~w~-----~~~r~~l~~~---- 65 (179)
T d2ff4a2 8 LGRFVAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------L-----RDFQFV-----EPFATALVED---- 65 (179)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------G-----TTSTTH-----HHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------C-----cchHHH-----HHHHHHHHHH----
Confidence 34566788899999999999999999999998765321100 0 001110 1111122222
Q ss_pred HHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHH-HHcCC
Q psy10738 277 AVEAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHLEIS-KQLGD 355 (609)
Q Consensus 277 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~-~~~~~ 355 (609)
...++..++.++...|++++|+.++++++.+.+.... +|..++.+|...|++.+|+..|+++.... +++|.
T Consensus 66 --~~~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~------~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~ 137 (179)
T d2ff4a2 66 --KVLAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGI 137 (179)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSC
T ss_pred --HHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHH------HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCC
Confidence 3557778888899999999999999999888887765 88888899999999999999998887775 45676
Q ss_pred CchH
Q psy10738 356 PLGQ 359 (609)
Q Consensus 356 ~~~~ 359 (609)
.+..
T Consensus 138 ~P~~ 141 (179)
T d2ff4a2 138 DPGP 141 (179)
T ss_dssp CCCH
T ss_pred CcCH
Confidence 6553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=98.05 E-value=2.3e-06 Score=80.58 Aligned_cols=127 Identities=9% Similarity=0.003 Sum_probs=87.2
Q ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Q psy10738 69 AYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGN 148 (609)
Q Consensus 69 ~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~ 148 (609)
-.+..|++++|+..++++++. .|..+.++..+|.+|...|++++|+..+++++++.+ ....++..++.
T Consensus 5 ~aL~~G~l~eAl~~l~~al~~------~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P------~~~~~~~~l~~ 72 (264)
T d1zbpa1 5 NALSEGQLQQALELLIEAIKA------SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP------EYLPGASQLRH 72 (264)
T ss_dssp HHTTTTCHHHHHHHHHHHHHT------CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCG------GGHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC------CcHHHHHHHHH
Confidence 345678899999999998888 888888999999999999999999999999888876 44556666777
Q ss_pred HHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q psy10738 149 VYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLK 228 (609)
Q Consensus 149 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 228 (609)
++...+. ..++...+..... ...+.....+...+.++...|++++|...+.++.+
T Consensus 73 ll~a~~~--------------------~~~a~~~~~~~~~-----~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e 127 (264)
T d1zbpa1 73 LVKAAQA--------------------RKDFAQGAATAKV-----LGENEELTKSLVSFNLSMVSQDYEQVSELALQIEE 127 (264)
T ss_dssp HHHHHHH--------------------HHHHTTSCCCEEC-----CCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHhccc--------------------cHHHHHHhhhhhc-----ccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHh
Confidence 6666555 4433222211110 11223344555667777777777777777777766
Q ss_pred HHHH
Q psy10738 229 IARE 232 (609)
Q Consensus 229 ~~~~ 232 (609)
..+.
T Consensus 128 ~~p~ 131 (264)
T d1zbpa1 128 LRQE 131 (264)
T ss_dssp HCCC
T ss_pred cCCC
Confidence 6544
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.78 E-value=0.00013 Score=60.36 Aligned_cols=114 Identities=18% Similarity=0.136 Sum_probs=84.8
Q ss_pred CChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHHHHHH---
Q psy10738 36 GDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGNTLKV--- 112 (609)
Q Consensus 36 g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~~~~~--- 112 (609)
.|+++|+.+|+++.+.+.. . +++.+|. ....++++|+.+++++.+. ....+.+.+|.+|..
T Consensus 7 kd~~~A~~~~~kaa~~g~~--~----a~~~l~~--~~~~~~~~a~~~~~~aa~~--------g~~~a~~~Lg~~y~~g~~ 70 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM--F----GCLSLVS--NSQINKQKLFQYLSKACEL--------NSGNGCRFLGDFYENGKY 70 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT--T----HHHHHHT--CTTSCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHCSS
T ss_pred cCHHHHHHHHHHHHHCCCh--h----hhhhhcc--ccccCHHHHHHHHhhhhcc--------cchhhhhhHHHhhhhccc
Confidence 3789999999999987532 2 4455553 3567899999999988654 346788999999886
Q ss_pred -cCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHH
Q psy10738 113 -MGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLAL 189 (609)
Q Consensus 113 -~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~ 189 (609)
..++.+|+.+|+++.+. ..+.+.++||.+|..- . .+..++.+|+.+|+++.+.
T Consensus 71 ~~~d~~~A~~~~~~aa~~--------g~~~a~~~Lg~~y~~G-~---------------gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 71 VKKDLRKAAQYYSKACGL--------NDQDGCLILGYKQYAG-K---------------GVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp SCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHT-S---------------SSCCCHHHHHHHHHHHHHT
T ss_pred cchhhHHHHHHHhhhhcc--------CcchHHHHHHHHHHcC-C---------------ccCCCHHHHHHHHHHHHHC
Confidence 46789999999998764 3356888999998762 1 0111299999999998764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=97.48 E-value=0.00025 Score=58.51 Aligned_cols=112 Identities=21% Similarity=0.253 Sum_probs=83.9
Q ss_pred hHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHH
Q psy10738 172 VKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHI 251 (609)
Q Consensus 172 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~ 251 (609)
+.+++++|+.+|+++.+. ++. .++.++|. ....++++|+.+++++.+. ++ ..+.+.+|.+|.
T Consensus 5 v~kd~~~A~~~~~kaa~~----g~~----~a~~~l~~--~~~~~~~~a~~~~~~aa~~----g~----~~a~~~Lg~~y~ 66 (133)
T d1klxa_ 5 VKKDLKKAIQYYVKACEL----NEM----FGCLSLVS--NSQINKQKLFQYLSKACEL----NS----GNGCRFLGDFYE 66 (133)
T ss_dssp HHHHHHHHHHHHHHHHHT----TCT----THHHHHHT--CTTSCHHHHHHHHHHHHHT----TC----HHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHHC----CCh----hhhhhhcc--ccccCHHHHHHHHhhhhcc----cc----hhhhhhHHHhhh
Confidence 567799999999998754 332 24555554 3457899999999987653 33 237788999987
Q ss_pred H----hCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHH----hCCHHHHHHHHHHHHHH
Q psy10738 252 F----LGEYQAASEHYKRTLVLAQDLGDRAVEAQACYSLGNTYTL----LRDYPTAIDYHLRHLII 309 (609)
Q Consensus 252 ~----~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~----~g~~~~A~~~~~~al~~ 309 (609)
. ..++++|+.+|+++.+.. + +.+++.||.+|.. ..++++|+.+|++|.+.
T Consensus 67 ~g~~~~~d~~~A~~~~~~aa~~g----~----~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~ 124 (133)
T d1klxa_ 67 NGKYVKKDLRKAAQYYSKACGLN----D----QDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL 124 (133)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHTT----C----HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred hccccchhhHHHHHHHhhhhccC----c----chHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHC
Confidence 6 457899999999987542 2 5678899999887 46899999999988753
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.97 E-value=0.0062 Score=48.37 Aligned_cols=31 Identities=19% Similarity=0.105 Sum_probs=15.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 101 KSSGNLGNTLKVMGKYDEAMVCCKRHLEISR 131 (609)
Q Consensus 101 ~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 131 (609)
.+++++|..|+.+|+|++|..++++++++.|
T Consensus 74 d~lY~Lav~yyklgdy~~A~~~~~~~L~ieP 104 (124)
T d2pqrb1 74 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHER 104 (124)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 4445555555555555555555555555444
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.73 E-value=0.0056 Score=48.65 Aligned_cols=72 Identities=13% Similarity=0.030 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHH
Q psy10738 140 GRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQA 219 (609)
Q Consensus 140 ~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A 219 (609)
..+.++.|+++....+ ..+.++|+..++++++. ++.....++++||..|+.+|+|++|
T Consensus 35 ~qt~F~YAw~Lv~S~~-----------------~~d~~~gI~lLe~~~~~-----~p~~~rd~lY~Lav~yyklgdy~~A 92 (124)
T d2pqrb1 35 IQSRFNYAWGLIKSTD-----------------VNDERLGVKILTDIYKE-----AESRRRECLYYLTIGCYKLGEYSMA 92 (124)
T ss_dssp HHHHHHHHHHHHHSSC-----------------HHHHHHHHHHHHHHHHH-----CGGGHHHHHHHHHHHHHHHTCHHHH
T ss_pred cchHHHHHHHHHcCCc-----------------HHHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHhhHHHH
Confidence 5677777777776544 22377888888777653 2334457888999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy10738 220 IYYHQERLKIAREF 233 (609)
Q Consensus 220 ~~~~~~al~~~~~~ 233 (609)
..++++++++.|.+
T Consensus 93 ~~~~~~~L~ieP~n 106 (124)
T d2pqrb1 93 KRYVDTLFEHERNN 106 (124)
T ss_dssp HHHHHHHHHHCTTC
T ss_pred HHHHHHHHccCCCc
Confidence 99999988886653
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.71 E-value=7.7 Score=37.34 Aligned_cols=126 Identities=8% Similarity=-0.007 Sum_probs=76.9
Q ss_pred HHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHHHHHHH
Q psy10738 29 GERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSSGNLGN 108 (609)
Q Consensus 29 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~~~lg~ 108 (609)
|..-....+.+.|...+.......+............++......+..+.+...+...... .... ......++.
T Consensus 221 ~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~----~~~~--~~~~w~~~~ 294 (450)
T d1qsaa1 221 AFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR----SQST--SLIERRVRM 294 (450)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT----CCCH--HHHHHHHHH
T ss_pred HHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc----ccch--HHHHHHHHH
Confidence 4444555678888888888776655444444445555555555566677777666554332 1111 222223333
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHHHHHH
Q psy10738 109 TLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYYEQNL 187 (609)
Q Consensus 109 ~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 187 (609)
....+++..+...+...- ..........+.+|..+...|+ .+.|..+|..+.
T Consensus 295 -al~~~~~~~~~~~~~~l~------~~~~~~~r~~YW~gRa~~~~G~--------------------~~~A~~~~~~~a 346 (450)
T d1qsaa1 295 -ALGTGDRRGLNTWLARLP------MEAKEKDEWRYWQADLLLERGR--------------------EAEAKEILHQLM 346 (450)
T ss_dssp -HHHHTCHHHHHHHHHHSC------TTGGGSHHHHHHHHHHHHHTTC--------------------HHHHHHHHHHHH
T ss_pred -HHHcCChHHHHHHHHhcC------cccccHHHHHHHHHHHHHHcCC--------------------hhhHHHHHHHHh
Confidence 445678887777665421 2233456778899999999998 888888877754
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=89.92 E-value=6.9 Score=37.67 Aligned_cols=128 Identities=5% Similarity=-0.098 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Q psy10738 205 NLGNTYYLLGNFKQAIYYHQERLKIAREFGDKAAERRANSNLGNSHIFLGEYQAASEHYKRTLVLAQDLGDRAVEAQACY 284 (609)
Q Consensus 205 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 284 (609)
..+.......+.+.|...+....... .............++......+..+.|..++...... ..+ . .....
T Consensus 219 ~~~l~rla~~d~~~a~~~l~~~~~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~-~--~~~~w 290 (450)
T d1qsaa1 219 AVAFASVARQDAENARLMIPSLAQAQ--QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQS-T--SLIER 290 (450)
T ss_dssp HHHHHHHHHHCHHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCC-H--HHHHH
T ss_pred HHHHHHHhccChhHHHHHHHhhhhcc--cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccc-h--HHHHH
Confidence 34444445567778877776643321 1122223334444455555566777777766554321 122 1 12222
Q ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Q psy10738 285 SLGNTYTLLRDYPTAIDYHLRHLIIAQQLMDRVGEGRACWSLGNAHAARGNHEKALYFATKHL 347 (609)
Q Consensus 285 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al 347 (609)
.++ .....+++..+..++...- ..........+.+|..+..+|+.++|..+|..+.
T Consensus 291 ~~~-~al~~~~~~~~~~~~~~l~------~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a 346 (450)
T d1qsaa1 291 RVR-MALGTGDRRGLNTWLARLP------MEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (450)
T ss_dssp HHH-HHHHHTCHHHHHHHHHHSC------TTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHH-HHHHcCChHHHHHHHHhcC------cccccHHHHHHHHHHHHHHcCChhhHHHHHHHHh
Confidence 333 3456789998887775431 2233456788999999999999999999998875
|
| >d2o02a1 a.118.7.1 (A:1-230) zeta isoform {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: zeta isoform species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.84 E-value=7.8 Score=33.51 Aligned_cols=187 Identities=13% Similarity=0.085 Sum_probs=104.0
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCChhhHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLARNMEDKLGEAKS 102 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~d~~~~~~a 102 (609)
.++..|...-..++|++.+.+.+++++.++.-... =...+..+|-. .|....+...+...... ..++.. ..
T Consensus 5 ~~v~~Aklaeq~eRy~dm~~~mk~~~~~~~eLt~e---ERnLlsvayKn~i~~rR~s~R~l~~ie~k--~~~~~~-~~-- 76 (230)
T d2o02a1 5 ELVQKAKLAEQAERYDDMAACMKSVTEQGAELSNE---ERNLLSVAYKNVVGARRSSWRVVSSIEQK--TEGAEK-KQ-- 76 (230)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCSCCCHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------CH--
T ss_pred HHHHHHHHHHHHcCHHHHHHHHHHHHhcCCCCCHH---HHHHHHHHHHHhhhhHHHHHHHHHHHHHH--HcCcch-hh--
Confidence 45566888889999999999999999987742211 12233333322 23334444433322111 011111 11
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHH
Q psy10738 103 SGNLGNTLKVMGKYDEAMVCCKRHLEIS-----RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQ 177 (609)
Q Consensus 103 ~~~lg~~~~~~g~~~~A~~~~~~al~l~-----~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 177 (609)
.+..-|.. .=-.+=...+...+.+. +...+....+..+-..|..|...-.+ ...++.....+
T Consensus 77 --~~i~~yk~-kie~EL~~~C~dil~lid~~Lip~~~~~eskvFy~KmkgDy~RY~aE~----------~~~~e~~~~~~ 143 (230)
T d2o02a1 77 --QMAREYRE-KIETELRDICNDVLSLLEKFLIPNASQAESKVFYLKMKGDYYRYLAEV----------AAGDDKKGIVD 143 (230)
T ss_dssp --HHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHT----------CCHHHHHHHHH
T ss_pred --HHHHHHHH-HHHHHHHHHHcchHHHHHhhcCccCCCchhhhhHHHhcccHHHHHHHh----------cCcHHHHHHHH
Confidence 01111111 11123344555555544 34455555666666778888776551 11234445678
Q ss_pred HHHHHHHHHHHHHHH-h-C-ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q psy10738 178 EAIKYYEQNLALMKE-I-N-DTAAQGRACGNLGNTYYLLGNFKQAIYYHQERLKIAR 231 (609)
Q Consensus 178 ~A~~~~~~al~~~~~-~-~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~ 231 (609)
.|...|++|+.++.. + . ++...+.+++.-...|..+|+.++|....++++.-+-
T Consensus 144 ~a~~aY~~A~~~A~~~L~~t~pirLgL~LN~SVF~YEi~~~~~~A~~lak~afd~ai 200 (230)
T d2o02a1 144 QSQQAYQEAFEISKKEMQPTHPIRLGLALNFSVFYYEILNSPEKACSLAKTAFDEAI 200 (230)
T ss_dssp HHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCCCCchHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 899999999998875 3 2 3333444444444455568999999999999887654
|
| >d1o9da_ a.118.7.1 (A:) 14-3-3-like protein C {Common tobacco (Nicotiana tabacum) [TaxId: 4097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: 14-3-3 protein family: 14-3-3 protein domain: 14-3-3-like protein C species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]
Probab=85.52 E-value=11 Score=32.74 Aligned_cols=187 Identities=13% Similarity=0.060 Sum_probs=102.7
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHh--CCc-chhHHHHHHHHHHHHHHH-hCCHHHHHHHHHHHHHHHHHcCChhhH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQA--GTD-DLRTLSAIYSQLGNAYFY-LGDYQKAMQYHKQDLTLARNMEDKLGE 99 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~--~~~-~~~~~a~~~~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~d~~~~ 99 (609)
+++..|...-..++|++.+.+.+++++. +++ +.+ =...+..+|-. .|....+...+......-...++...
T Consensus 6 ~lv~~AklaeqaeRy~dm~~~mk~v~~~~~~~~Ls~e----ERnLlsvayKn~i~~~R~s~r~l~~~e~k~~~~~~~~~- 80 (236)
T d1o9da_ 6 ENVYMAKLAEQAERYEEMVEFMEKVSNSLGSEELTVE----ERNLLSVAYKNVIGARRASWRIISSIEQKEESRGNEEH- 80 (236)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTCSSSCCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCHHH-
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhcCCCCCCHH----HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHccCChHH-
Confidence 3455677888889999999999999987 443 221 12233333332 23344444444333222121222111
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-----HHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHH
Q psy10738 100 AKSSGNLGNTLKVMGKYDEAMVCCKRHLEIS-----RQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKV 174 (609)
Q Consensus 100 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-----~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~ 174 (609)
. .+..-|.. .--++=...+...+++. +...+....+..+-..|..|...-.. ...++...
T Consensus 81 ~----~~i~~yk~-kie~EL~~~C~~ii~lid~~Lip~~~~~eskvFy~KmkgDyyRYlaE~----------~~~~e~~~ 145 (236)
T d1o9da_ 81 V----NSIREYRS-KIENELSKICDGILKLLDAKLIPSAASGDSKVFYLKMKGDYHRYLAEF----------KTGAERKE 145 (236)
T ss_dssp H----HHHHHHHH-HHHHHHHHHHHHHHHHHHHTHHHHCCSHHHHHHHHHHHHHHHHHHHHH----------CCSHHHHH
T ss_pred H----HHHHHHHH-HHHHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHhhchHHHHHHHh----------cCchhHHH
Confidence 1 11111111 11123344555555544 33344445555566777777766541 11123445
Q ss_pred hHHHHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHH
Q psy10738 175 CLQEAIKYYEQNLALMKEI--NDTAAQGRACGNLGNTYY-LLGNFKQAIYYHQERLKIA 230 (609)
Q Consensus 175 ~~~~A~~~~~~al~~~~~~--~~~~~~~~~~~~lg~~~~-~~g~~~~A~~~~~~al~~~ 230 (609)
.-+.|...|++|+.++... ..+|.......|.+..|+ ..|+.++|....++++.-+
T Consensus 146 ~~~~a~~aY~~A~~~a~~~l~pt~PirLgLaLN~SVF~yEi~~~~~~A~~lak~afd~a 204 (236)
T d1o9da_ 146 AAESTLTAYKAAQDIATTELAPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEA 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHhHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 5788999999999988753 233444445555565555 4699999999888887654
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.43 E-value=2.7 Score=29.45 Aligned_cols=34 Identities=15% Similarity=0.096 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Q psy10738 279 EAQACYSLGNTYTLLRDYPTAIDYHLRHLIIAQQ 312 (609)
Q Consensus 279 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 312 (609)
.+..+...|.-+...|.|++|++++++|.....+
T Consensus 7 ~AH~~~RrAer~l~~~rydeAIech~kA~~yl~e 40 (83)
T d2crba1 7 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSE 40 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 4455555666666677777777777666655443
|
| >d2crba1 a.7.16.1 (A:8-90) Nuclear receptor binding factor 2, NRBF2, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Spectrin repeat-like superfamily: MIT domain-like family: MIT domain domain: Nuclear receptor binding factor 2, NRBF2, N-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=80.38 E-value=2.4 Score=29.71 Aligned_cols=38 Identities=13% Similarity=0.024 Sum_probs=31.1
Q ss_pred hhhHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHc
Q psy10738 316 RVGEGRACWSLGNAHAARGNHEKALYFATKHLEISKQL 353 (609)
Q Consensus 316 ~~~~~~~~~~La~~~~~~g~~~~A~~~~~~al~l~~~~ 353 (609)
+...+-.+...|+-+...|.|++|+++.++|.....+.
T Consensus 4 PLN~AH~~~RrAer~l~~~rydeAIech~kA~~yl~eA 41 (83)
T d2crba1 4 PLNLAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEA 41 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 33455677788999999999999999999999877554
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=80.12 E-value=22 Score=32.49 Aligned_cols=174 Identities=18% Similarity=0.179 Sum_probs=81.5
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCChhhHHHHH
Q psy10738 24 ELALEGERLCKAGDCRAGVAFFQAAIQAGTDDLRTLSAIYSQLGNAYFYLGDYQKAMQYHKQDLTLARNMEDKLGEAKSS 103 (609)
Q Consensus 24 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~d~~~~~~a~ 103 (609)
..-.-|..+.+.|.|+.|..+|... .+ +..+..++...+++..|..++.++ .....|
T Consensus 16 d~~~i~~~c~~~~lye~A~~lY~~~-----~d-------~~rl~~~~v~l~~~~~avd~~~k~-----------~~~~~~ 72 (336)
T d1b89a_ 16 HIQQVGDRCYDEKMYDAAKLLYNNV-----SN-------FGRLASTLVHLGEYQAAVDGARKA-----------NSTRTW 72 (336)
T ss_dssp -------------CTTTHHHHHHHT-----TC-------HHHHHHHHHTTTCHHHHHHHHHHH-----------TCHHHH
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHhC-----CC-------HHHHHHHHHhhccHHHHHHHHHHc-----------CCHHHH
Confidence 3334477777888888888877642 11 234456667778877777665433 123355
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcccccccCCCCCCCCCchHhHHhHHHHHHHH
Q psy10738 104 GNLGNTLKVMGKYDEAMVCCKRHLEISRQLNDKLSEGRALYNLGNVYHAKGKAIGKVGQQDPGEYPEEVKVCLQEAIKYY 183 (609)
Q Consensus 104 ~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~d~~~~~~~~~~lg~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~A~~~~ 183 (609)
..+...+.......-|..+-. . .. ..+.-...+...|...|. +++.+.++
T Consensus 73 k~~~~~l~~~~e~~la~i~~~-~-----~~----~~~d~l~~~v~~ye~~~~--------------------~e~Li~~L 122 (336)
T d1b89a_ 73 KEVCFACVDGKEFRLAQMCGL-H-----IV----VHADELEELINYYQDRGY--------------------FEELITML 122 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHTTT-T-----TT----TCHHHHHHHHHHHHHTTC--------------------HHHHHHHH
T ss_pred HHHHHHHHhCcHHHHHHHHHH-H-----hh----cCHHHHHHHHHHHHHcCC--------------------hHHHHHHH
Confidence 555555555555443311100 0 00 111122234455566666 77777777
Q ss_pred HHHHHHHHHhCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHH---------HHHHHHHhCChHHHHHHHHHHHHHHHHhC
Q psy10738 184 EQNLALMKEINDTAAQGRACGNLGNTYYLLGNFKQAIYYHQE---------RLKIAREFGDKAAERRANSNLGNSHIFLG 254 (609)
Q Consensus 184 ~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~---------al~~~~~~~~~~~~~~~~~~la~~~~~~g 254 (609)
+.++.. .......+..++.+|... +.++-.++++. ++..+.+.+ .|-.+..+|...|
T Consensus 123 e~~~~~------~~~~~~~~~~L~~lyak~-~~~kl~e~l~~~s~~y~~~k~~~~c~~~~-------l~~elv~Ly~~~~ 188 (336)
T d1b89a_ 123 EAALGL------ERAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAH-------LWAELVFLYDKYE 188 (336)
T ss_dssp HHHTTS------TTCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTT-------CHHHHHHHHHHTT
T ss_pred HHHHcC------CccchHHHHHHHHHHHHh-ChHHHHHHHHhccccCCHHHHHHHHHHcC-------ChHHHHHHHHhcC
Confidence 765532 111223455666655543 23444444332 222222222 2345666777888
Q ss_pred CHHHHHHHHH
Q psy10738 255 EYQAASEHYK 264 (609)
Q Consensus 255 ~~~~A~~~~~ 264 (609)
+++.|+..+-
T Consensus 189 ~~~~A~~~~i 198 (336)
T d1b89a_ 189 EYDNAIITMM 198 (336)
T ss_dssp CHHHHHHHHH
T ss_pred CHHHHHHHHH
Confidence 8888776553
|