Psyllid ID: psy10761

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-----
MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS
ccccccccccccEEEEEEEEEEEEEEEEEccccccccccccEEEEccccccccccccEEEEEEccccccccccEEEEEEEEEcccccEEEEEEEEEEEEccccccccccccEEEEEccccccccccEEEcccccHHHccccccccEEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHccccccEEEEEccEEEEEEcHHHccccHHHHHHHcccccccccccEEEccccHHHHHHHHHcccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHcHHcccccHHHHHHHHHcHHHHHHHHHHHHHcccccccccccccccc
ccEcccccccccccEEEEEEEEEEEEEEEEccEEccccccEEEEcccEEEcccccEEEEEEEcccccccccccEEEEEEEEEccccccEEEEEEEEEEEccccccccEcccccEEEcccccccccHEEEHHHHHHHccccccccEEEEEEEEEEEEccEEccccccccccEccccHHHHHHHHHHHcccccEEEEEEcccEcHHHHHHHHcccHHHHHHHccccccccccEEEEccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHcHHHHHHHHHHHHHcccccccccccccccc
MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLksstfsagandklkwclrvnpkgldeesKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDElngllpedkltIFCEVSVVADsvnisgqsnaaqfkvpdcrladNLGALFeiqkfsdvtlysAGQEFRAHKAILAAQSPVFMAMFEHEMEERkhnrvdiadvDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALAtqqippigpprkrvkqs
MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSStfsagandklkWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFsilnakreetkamesqrayrfvqgkdwgfKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEerkhnrvdiadvdaDVLREMLRFIYtgrstsldkMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATqqippigpprkrvkqs
MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSldkmaddllaaadkyalERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS
*FLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAK*********QRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQ***************
**************WLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMF********H*RVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRAL******************
MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIG*********
*******LIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQ**************
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MFLLTYALIHHVLFWLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query365 2.2.26 [Sep-21-2011]
Q9VFP2829 Protein roadkill OS=Droso no N/A 0.961 0.423 0.854 1e-173
Q6P8B3374 Speckle-type POZ protein yes N/A 0.961 0.938 0.806 1e-165
Q7ZX06374 Speckle-type POZ protein N/A N/A 0.961 0.938 0.806 1e-165
Q0IHH9374 Speckle-type POZ protein N/A N/A 0.961 0.938 0.803 1e-164
Q7T330374 Speckle-type POZ protein yes N/A 0.991 0.967 0.784 1e-164
Q5NVK7374 Speckle-type POZ protein yes N/A 0.961 0.938 0.797 1e-163
Q6ZWS8374 Speckle-type POZ protein yes N/A 0.961 0.938 0.797 1e-163
O43791374 Speckle-type POZ protein yes N/A 0.961 0.938 0.797 1e-163
Q0VCW1374 Speckle-type POZ protein yes N/A 0.961 0.938 0.797 1e-163
Q5BL35392 Speckle-type POZ protein- no N/A 0.961 0.895 0.747 1e-157
>sp|Q9VFP2|RDX_DROME Protein roadkill OS=Drosophila melanogaster GN=rdx PE=1 SV=2 Back     alignment and function desciption
 Score =  608 bits (1567), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 300/351 (85%), Positives = 325/351 (92%)

Query: 15  WLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 74
           + QVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY
Sbjct: 479 YTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 538

Query: 75  LSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 134
           LSLYLLLVSCNK+EVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL
Sbjct: 539 LSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 598

Query: 135 DELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVT 194
           DE NGLLPEDKLTIFCEVSVVADSVNISGQSN  QFKVP+C+L+++LG LF+ +KFSDVT
Sbjct: 599 DEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVT 658

Query: 195 LYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRS 254
           L   G+EF+AHKAILAA+S VF AMFEHEMEERK NRV I DVD +VL+EMLRFIYTG++
Sbjct: 659 LSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKA 718

Query: 255 TSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIE 314
            +L+KMADDLLAAADKYALE+LKVMCEEALC NLS+E AAE LILADLHSADQLK Q I+
Sbjct: 719 PNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTID 778

Query: 315 FINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS 365
           FINTHAT+VM+T GW+ MI +H HLIAEAFRALATQQIPPIGPPRKRVK S
Sbjct: 779 FINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829
Involved in segment polarity. In complex with gft/CUL3, promotes ubiquitination of ci and its subsequent degradation by the proteasome, which results in hh signaling attenuation. This regulation may be important during eye formation for proper packing of ommatidia into an hexagonal array.
Drosophila melanogaster (taxid: 7227)
>sp|Q6P8B3|SPOP_XENTR Speckle-type POZ protein OS=Xenopus tropicalis GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q7ZX06|SPOPA_XENLA Speckle-type POZ protein A OS=Xenopus laevis GN=spop-a PE=2 SV=1 Back     alignment and function description
>sp|Q0IHH9|SPOPB_XENLA Speckle-type POZ protein B OS=Xenopus laevis GN=spop-b PE=2 SV=1 Back     alignment and function description
>sp|Q7T330|SPOP_DANRE Speckle-type POZ protein OS=Danio rerio GN=spop PE=2 SV=1 Back     alignment and function description
>sp|Q5NVK7|SPOP_PONAB Speckle-type POZ protein OS=Pongo abelii GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q6ZWS8|SPOP_MOUSE Speckle-type POZ protein OS=Mus musculus GN=Spop PE=1 SV=1 Back     alignment and function description
>sp|O43791|SPOP_HUMAN Speckle-type POZ protein OS=Homo sapiens GN=SPOP PE=1 SV=1 Back     alignment and function description
>sp|Q0VCW1|SPOP_BOVIN Speckle-type POZ protein OS=Bos taurus GN=SPOP PE=2 SV=1 Back     alignment and function description
>sp|Q5BL35|SPOLA_DANRE Speckle-type POZ protein-like A OS=Danio rerio GN=spopla PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
270001755449 hypothetical protein TcasGA2_TC000632 [T 0.961 0.781 0.900 0.0
189234444374 PREDICTED: similar to Protein roadkill ( 0.961 0.938 0.900 0.0
328717632433 PREDICTED: protein roadkill-like [Acyrth 0.961 0.810 0.884 1e-179
328777005434 PREDICTED: protein roadkill-like [Apis m 0.961 0.808 0.888 1e-178
350405283374 PREDICTED: protein roadkill-like isoform 0.961 0.938 0.888 1e-178
383866175434 PREDICTED: protein roadkill-like [Megach 0.961 0.808 0.888 1e-178
322801136349 hypothetical protein SINV_80191 [Solenop 0.956 1.0 0.896 1e-178
340726087434 PREDICTED: protein roadkill-like [Bombus 0.961 0.808 0.888 1e-178
307193486405 Protein roadkill [Harpegnathos saltator] 0.961 0.866 0.886 1e-177
307182335374 Protein roadkill [Camponotus floridanus] 0.961 0.938 0.888 1e-177
>gi|270001755|gb|EEZ98202.1| hypothetical protein TcasGA2_TC000632 [Tribolium castaneum] Back     alignment and taxonomy information
 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/351 (90%), Positives = 335/351 (95%)

Query: 15  WLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 74
           + QVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY
Sbjct: 99  YTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 158

Query: 75  LSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 134
           LSLYLLLVSCNK+EVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL
Sbjct: 159 LSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 218

Query: 135 DELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVT 194
           DE NGLLP+DKLTIFCEVSVVADSVNISGQSN  QFKVP+CRL+D+LG LFE QKFSDVT
Sbjct: 219 DEANGLLPDDKLTIFCEVSVVADSVNISGQSNTIQFKVPECRLSDDLGLLFENQKFSDVT 278

Query: 195 LYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRS 254
           L   G+EF+AHKAILAA+SPVF AMFEHEMEERKHNRVDI DVD +VLREMLRFIYTG++
Sbjct: 279 LSVGGREFQAHKAILAARSPVFQAMFEHEMEERKHNRVDITDVDHEVLREMLRFIYTGKA 338

Query: 255 TSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIE 314
           ++L+KMADDLLAAADKYALERLKVMCEEALCTNLSI+NAAEILILADLHSADQLK QAI+
Sbjct: 339 SNLEKMADDLLAAADKYALERLKVMCEEALCTNLSIDNAAEILILADLHSADQLKAQAID 398

Query: 315 FINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS 365
           FINTHAT+VMDT GWK MI +HPHLIAEAFRALATQQIPPIGPPRKRVKQS
Sbjct: 399 FINTHATDVMDTPGWKSMIQTHPHLIAEAFRALATQQIPPIGPPRKRVKQS 449

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|189234444|ref|XP_966622.2| PREDICTED: similar to Protein roadkill (Hh-induced MATH and BTB domain-containing protein) [Tribolium castaneum] Back     alignment and taxonomy information
>gi|328717632|ref|XP_001952667.2| PREDICTED: protein roadkill-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|328777005|ref|XP_395294.4| PREDICTED: protein roadkill-like [Apis mellifera] gi|380024611|ref|XP_003696087.1| PREDICTED: protein roadkill-like [Apis florea] Back     alignment and taxonomy information
>gi|350405283|ref|XP_003487384.1| PREDICTED: protein roadkill-like isoform 1 [Bombus impatiens] Back     alignment and taxonomy information
>gi|383866175|ref|XP_003708546.1| PREDICTED: protein roadkill-like [Megachile rotundata] Back     alignment and taxonomy information
>gi|322801136|gb|EFZ21867.1| hypothetical protein SINV_80191 [Solenopsis invicta] Back     alignment and taxonomy information
>gi|340726087|ref|XP_003401394.1| PREDICTED: protein roadkill-like [Bombus terrestris] gi|350405285|ref|XP_003487385.1| PREDICTED: protein roadkill-like isoform 2 [Bombus impatiens] Back     alignment and taxonomy information
>gi|307193486|gb|EFN76263.1| Protein roadkill [Harpegnathos saltator] Back     alignment and taxonomy information
>gi|307182335|gb|EFN69617.1| Protein roadkill [Camponotus floridanus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query365
FB|FBgn0264493829 rdx "roadkill" [Drosophila mel 0.961 0.423 0.809 6.9e-150
UNIPROTKB|Q6P8B3374 spop "Speckle-type POZ protein 0.961 0.938 0.757 5.3e-143
UNIPROTKB|Q7ZX06374 spop-a "Speckle-type POZ prote 0.961 0.938 0.757 5.3e-143
ZFIN|ZDB-GENE-040426-1378374 spop "speckle-type POZ protein 0.961 0.938 0.757 8.6e-143
UNIPROTKB|Q0IHH9374 spop-b "Speckle-type POZ prote 0.961 0.938 0.754 1.1e-142
UNIPROTKB|E1C049374 SPOP "Uncharacterized protein" 0.961 0.938 0.752 6.1e-142
UNIPROTKB|Q0VCW1374 SPOP "Speckle-type POZ protein 0.961 0.938 0.749 1.3e-141
UNIPROTKB|E2RS90374 SPOP "Uncharacterized protein" 0.961 0.938 0.749 1.3e-141
UNIPROTKB|O43791374 SPOP "Speckle-type POZ protein 0.961 0.938 0.749 1.3e-141
UNIPROTKB|Q5NVK7374 SPOP "Speckle-type POZ protein 0.961 0.938 0.749 1.3e-141
FB|FBgn0264493 rdx "roadkill" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 1463 (520.1 bits), Expect = 6.9e-150, P = 6.9e-150
 Identities = 284/351 (80%), Positives = 308/351 (87%)

Query:    15 WLQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 74
             + QVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY
Sbjct:   479 YTQVKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDY 538

Query:    75 LSLYLLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 134
             LSLYLLLVSCNK+EVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL
Sbjct:   539 LSLYLLLVSCNKSEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLL 598

Query:   135 DELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVT 194
             DE NGLLPEDKLTIFCEVSVVADSVNISGQSN  QFKVP+C+L+++LG LF+ +KFSDVT
Sbjct:   599 DEANGLLPEDKLTIFCEVSVVADSVNISGQSNIVQFKVPECKLSEDLGNLFDNEKFSDVT 658

Query:   195 LYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRS 254
             L   G+EF+AHKAILAA+S VF AMFEHEMEERK NRV I DVD +VL+EMLRFIYTG++
Sbjct:   659 LSVGGREFQAHKAILAARSDVFAAMFEHEMEERKLNRVAITDVDHEVLKEMLRFIYTGKA 718

Query:   255 TSXXXXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIE 314
              +                 E+LKVMCEEALC NLS+E AAE LILADLHSADQLK Q I+
Sbjct:   719 PNLEKMADDLLAAADKYALEKLKVMCEEALCVNLSVETAAETLILADLHSADQLKAQTID 778

Query:   315 FINTHATEVMDTVGWKQMILSHPHLIAEAFRALATQQIPPIGPPRKRVKQS 365
             FINTHAT+VM+T GW+ MI +H HLIAEAFRALATQQIPPIGPPRKRVK S
Sbjct:   779 FINTHATDVMETSGWQNMITTHSHLIAEAFRALATQQIPPIGPPRKRVKMS 829
GO:0007349 "cellularization" evidence=IMP
GO:0042067 "establishment of ommatidial planar polarity" evidence=IMP
GO:0048592 "eye morphogenesis" evidence=IMP
GO:0005515 "protein binding" evidence=IPI
GO:0005634 "nucleus" evidence=IDA
GO:0016567 "protein ubiquitination" evidence=IMP
GO:0045879 "negative regulation of smoothened signaling pathway" evidence=IMP
GO:0030162 "regulation of proteolysis" evidence=IMP
GO:0043065 "positive regulation of apoptotic process" evidence=IGI
GO:0046330 "positive regulation of JNK cascade" evidence=IMP
GO:0042308 "negative regulation of protein import into nucleus" evidence=IMP
GO:0046331 "lateral inhibition" evidence=IMP
UNIPROTKB|Q6P8B3 spop "Speckle-type POZ protein" [Xenopus (Silurana) tropicalis (taxid:8364)] Back     alignment and assigned GO terms
UNIPROTKB|Q7ZX06 spop-a "Speckle-type POZ protein A" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040426-1378 spop "speckle-type POZ protein" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q0IHH9 spop-b "Speckle-type POZ protein B" [Xenopus laevis (taxid:8355)] Back     alignment and assigned GO terms
UNIPROTKB|E1C049 SPOP "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|Q0VCW1 SPOP "Speckle-type POZ protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RS90 SPOP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|O43791 SPOP "Speckle-type POZ protein" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5NVK7 SPOP "Speckle-type POZ protein" [Pongo abelii (taxid:9601)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q5NVK7SPOP_PONABNo assigned EC number0.79770.96160.9385yesN/A
Q7ZX06SPOPA_XENLANo assigned EC number0.80620.96160.9385N/AN/A
Q0IHH9SPOPB_XENLANo assigned EC number0.80340.96160.9385N/AN/A
Q0VCW1SPOP_BOVINNo assigned EC number0.79770.96160.9385yesN/A
Q6IQ16SPOPL_HUMANNo assigned EC number0.71840.99170.9234noN/A
Q2M2N2SPOPL_MOUSENo assigned EC number0.72080.96160.8954noN/A
Q6P8B3SPOP_XENTRNo assigned EC number0.80620.96160.9385yesN/A
Q717B2TDPZ2_MOUSENo assigned EC number0.53700.91780.9203noN/A
Q717B3TDPZ1_MOUSENo assigned EC number0.50720.93420.9342noN/A
Q6YCH2TDPZ4_MOUSENo assigned EC number0.53460.94240.9297noN/A
O43791SPOP_HUMANNo assigned EC number0.79770.96160.9385yesN/A
Q5BL35SPOLA_DANRENo assigned EC number0.74790.96160.8954noN/A
A0JMG1SPOLB_DANRENo assigned EC number0.71840.99170.9234noN/A
P34568BAT43_CAEELNo assigned EC number0.67680.95610.7738yesN/A
Q7T330SPOP_DANRENo assigned EC number0.78450.99170.9679yesN/A
Q6GR09SPOPL_XENLANo assigned EC number0.71000.96160.8954N/AN/A
Q6ZWS8SPOP_MOUSENo assigned EC number0.79770.96160.9385yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
cd03774139 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP 3e-93
pfam00651101 pfam00651, BTB, BTB/POZ domain 4e-29
cd00121126 cd00121, MATH, MATH (meprin and TRAF-C homology) d 2e-27
smart0022597 smart00225, BTB, Broad-Complex, Tramtrack and Bric 1e-24
smart0006195 smart00061, MATH, meprin and TRAF homology 5e-12
pfam00917116 pfam00917, MATH, MATH domain 8e-10
PHA03098 534 PHA03098, PHA03098, kelch-like protein; Provisiona 5e-08
cd03773132 cd03773, MATH_TRIM37, Tripartite motif containing 7e-08
PHA02713 557 PHA02713, PHA02713, hypothetical protein; Provisio 2e-06
cd03776147 cd03776, MATH_TRAF6, Tumor Necrosis Factor Recepto 4e-04
cd03775134 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 0.002
>gnl|CDD|239743 cd03774, MATH_SPOP, Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information 
 Score =  274 bits (703), Expect = 3e-93
 Identities = 128/139 (92%), Positives = 134/139 (96%)

Query: 19  KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
           KVVKF YMWTI+NFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 1   KVVKFCYMWTISNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 60

Query: 79  LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
           LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE N
Sbjct: 61  LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 139 GLLPEDKLTIFCEVSVVAD 157
           GLLP+DKLT+FCEVSVV D
Sbjct: 121 GLLPDDKLTLFCEVSVVQD 139

SPOP was isolated as a novel antigen recognized by serum from a scleroderma patient, whose overexpression in COS cells results in a discrete speckled pattern in the nuclei. It contains an N-terminal MATH domain and a C-terminal BTB (also called POZ) domain. Together with Cul3, SPOP constitutes an ubiquitin E3 ligase which is able to ubiquitinate the PcG protein BMI1, the variant histone macroH2A1 and the death domain-associated protein Daxx. Therefore, SPOP may be involved in the regulation of these proteins and may play a role in transcriptional regulation, apoptosis and X-chromosome inactivation. Cul3 binds to the BTB domain of SPOP whereas Daxx and the macroH2A1 nonhistone region have been shown to bind to the MATH domain. Both MATH and BTB domains are necessary for the nuclear speckled accumulation of SPOP. There are many proteins, mostly uncharacterized, containing both MATH and BTB domains from C. elegans and plants which are excluded from this family. Length = 139
>gnl|CDD|216043 pfam00651, BTB, BTB/POZ domain Back     alignment and domain information
>gnl|CDD|238068 cd00121, MATH, MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>gnl|CDD|197585 smart00225, BTB, Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>gnl|CDD|214496 smart00061, MATH, meprin and TRAF homology Back     alignment and domain information
>gnl|CDD|216189 pfam00917, MATH, MATH domain Back     alignment and domain information
>gnl|CDD|222983 PHA03098, PHA03098, kelch-like protein; Provisional Back     alignment and domain information
>gnl|CDD|239742 cd03773, MATH_TRIM37, Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>gnl|CDD|165086 PHA02713, PHA02713, hypothetical protein; Provisional Back     alignment and domain information
>gnl|CDD|239745 cd03776, MATH_TRAF6, Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>gnl|CDD|239744 cd03775, MATH_Ubp21p, Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 365
PHA02713 557 hypothetical protein; Provisional 99.95
cd03774139 MATH_SPOP Speckle-type POZ protein (SPOP) family, 99.95
KOG4441|consensus 571 99.94
PHA03098 534 kelch-like protein; Provisional 99.94
PHA02790 480 Kelch-like protein; Provisional 99.94
KOG4350|consensus 620 99.94
cd03779147 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) A 99.88
cd03772137 MATH_HAUSP Herpesvirus-associated ubiquitin-specif 99.87
cd03777186 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-A 99.87
cd03773132 MATH_TRIM37 Tripartite motif containing protein 37 99.87
cd03780148 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-A 99.87
cd00270149 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)- 99.86
cd03776147 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-A 99.86
cd03781154 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-A 99.85
cd03775134 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p 99.84
KOG2075|consensus 521 99.84
PF00651111 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB ( 99.82
cd03778164 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) A 99.81
cd03771167 MATH_Meprin Meprin family, MATH domain; Meprins ar 99.81
KOG4591|consensus280 99.8
cd00121126 MATH MATH (meprin and TRAF-C homology) domain; an 99.76
KOG4682|consensus 488 99.75
PF00917119 MATH: MATH domain; InterPro: IPR002083 Although ap 99.73
KOG0783|consensus 1267 99.72
smart0022590 BTB Broad-Complex, Tramtrack and Bric a brac. Doma 99.71
cd03782167 MATH_Meprin_Beta Meprin family, Beta subunit, MATH 99.63
cd03783167 MATH_Meprin_Alpha Meprin family, Alpha subunit, MA 99.62
smart0006195 MATH meprin and TRAF homology. 99.48
KOG1987|consensus297 99.48
COG5077 1089 Ubiquitin carboxyl-terminal hydrolase [Posttransla 99.05
KOG0783|consensus 1267 98.83
KOG0511|consensus516 98.76
KOG2838|consensus401 98.4
KOG2838|consensus401 98.3
KOG2716|consensus230 98.13
PF0221494 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi 97.94
PF11822 317 DUF3342: Domain of unknown function (DUF3342); Int 97.53
KOG3473|consensus112 97.47
smart00512104 Skp1 Found in Skp1 protein family. Family of Skp1 97.17
PF07707103 BACK: BTB And C-terminal Kelch; InterPro: IPR01170 97.16
KOG1863|consensus 1093 96.82
PF0393162 Skp1_POZ: Skp1 family, tetramerisation domain; Int 96.77
KOG0511|consensus 516 96.68
smart00875101 BACK BTB And C-terminal Kelch. The BACK domain is 96.38
KOG1724|consensus162 96.37
KOG0297|consensus391 95.98
KOG2714|consensus 465 95.66
KOG1778|consensus 319 95.39
KOG1665|consensus 302 95.26
KOG2715|consensus210 94.56
COG5201158 SKP1 SCF ubiquitin ligase, SKP1 component [Posttra 91.53
PF0146678 Skp1: Skp1 family, dimerisation domain; InterPro: 90.59
KOG2075|consensus 521 85.39
>PHA02713 hypothetical protein; Provisional Back     alignment and domain information 
Probab=99.95  E-value=1.3e-27  Score=234.22  Aligned_cols=166  Identities=20%  Similarity=0.318  Sum_probs=153.4

Q ss_pred             hhHHHHHHHhhhcCCCccEEEEec-CeEEehhHHHHhccCHHHHHhccccccccC-CCeEEEccCCHHHHHHHhHhhccC
Q psy10761        175 CRLADNLGALFEIQKFSDVTLYSA-GQEFRAHKAILAAQSPVFMAMFEHEMEERK-HNRVDIADVDADVLREMLRFIYTG  252 (365)
Q Consensus       175 ~~l~~~l~~l~~~~~~~Dv~i~~~-~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~-~~~i~l~~~~~~~f~~~L~~iY~~  252 (365)
                      ..+.+.|.+|+.++.++||+|.++ |++|+|||.|||++|+||++||.++++|.. +++|.|.++++++|+.+|+|+||+
T Consensus        10 ~~~l~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~~~~~~v~l~~v~~~~~~~ll~y~Yt~   89 (557)
T PHA02713         10 RRVVSNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIRDLVTRVNLQMFDKDAVKNIVQYLYNR   89 (557)
T ss_pred             HHHHHHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhhccCceEEeccCCHHHHHHHHHHhcCC
Confidence            356789999999999999999997 899999999999999999999999999864 789999999999999999999999


Q ss_pred             CCCCcHHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCccHHHH
Q psy10761        253 RSTSLDKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVGWKQM  332 (365)
Q Consensus       253 ~~~~~~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~~~~l  332 (365)
                      .  ++.+++.++|.+|++|+++.|++.|+++|.+.++.+||+.++.+|..+.+..|.+.|.+|+.+||.++.++++|.+|
T Consensus        90 ~--i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~v~~~~ef~~L  167 (557)
T PHA02713         90 H--ISSMNVIDVLKCADYLLIDDLVTDCESYIKDYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPTLITTDAFKKT  167 (557)
T ss_pred             C--CCHHHHHHHHHHHHHHCHHHHHHHHHHHHHhhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHHHhCChhhhhC
Confidence            7  57899999999999999999999999999999999999999999999999899999999999999999999999988


Q ss_pred             HhhChHHHHHHHH
Q psy10761        333 ILSHPHLIAEAFR  345 (365)
Q Consensus       333 ~~~~~~~~~~l~~  345 (365)
                      +.   +.+.+++.
T Consensus       168 ~~---~~l~~lL~  177 (557)
T PHA02713        168 VF---EILFDIIS  177 (557)
T ss_pred             CH---HHHHHHhc
Confidence            74   44554444

>cd03774 MATH_SPOP Speckle-type POZ protein (SPOP) family, MATH domain; composed of proteins with similarity to human SPOP Back     alignment and domain information
>KOG4441|consensus Back     alignment and domain information
>PHA03098 kelch-like protein; Provisional Back     alignment and domain information
>PHA02790 Kelch-like protein; Provisional Back     alignment and domain information
>KOG4350|consensus Back     alignment and domain information
>cd03779 MATH_TRAF1 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF1 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03772 MATH_HAUSP Herpesvirus-associated ubiquitin-specific protease (HAUSP, also known as USP7) family, N-terminal MATH (TRAF-like) domain; composed of proteins similar to human HAUSP, an enzyme that specifically catalyzes the deubiquitylation of p53 and MDM2, hence playing an important role in the p53-MDM2 pathway Back     alignment and domain information
>cd03777 MATH_TRAF3 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF3 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03773 MATH_TRIM37 Tripartite motif containing protein 37 (TRIM37) family, MATH domain; TRIM37 is a peroxisomal protein and is a member of the tripartite motif (TRIM) protein subfamily, also known as the RING-B-box-coiled-coil (RBCC) subfamily of zinc-finger proteins Back     alignment and domain information
>cd03780 MATH_TRAF5 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF5 subfamily, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd00270 MATH_TRAF_C Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF domain, C-terminal MATH subdomain; TRAF molecules serve as adapter proteins that link cell surface TNFRs and receptors of the interleukin-1/Toll-like family to downstream kinase signaling cascades which results in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses in the immune and inflammatory systems Back     alignment and domain information
>cd03776 MATH_TRAF6 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF6 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF6, including the Drosophila protein DTRAF2 Back     alignment and domain information
>cd03781 MATH_TRAF4 Tumor Necrosis Factor Receptor (TNFR)-Associated Factor (TRAF) family, TRAF4 subfamily, TRAF domain, C-terminal MATH subdomain; composed of proteins with similarity to human TRAF4, including the Drosophila protein DTRAF1 Back     alignment and domain information
>cd03775 MATH_Ubp21p Ubiquitin-specific protease 21 (Ubp21p) family, MATH domain; composed of fungal proteins with similarity to Ubp21p of fission yeast Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins Back     alignment and domain information
>cd03778 MATH_TRAF2 Tumor Necrosis Factor Receptor (TNFR) Associated Factor (TRAF) family, TRAF2 subfamily, TRAF domain; TRAF molecules serve as adapter proteins that link TNFRs and downstream kinase cascades resulting in the activation of transcription factors and the regulation of cell survival, proliferation and stress responses Back     alignment and domain information
>cd03771 MATH_Meprin Meprin family, MATH domain; Meprins are multidomain, highly glycosylated extracellular metalloproteases, which are either anchored to the membrane or secreted into extracellular spaces Back     alignment and domain information
>KOG4591|consensus Back     alignment and domain information
>cd00121 MATH MATH (meprin and TRAF-C homology) domain; an independent folding unit with an eight-stranded beta-sandwich structure found in meprins, TRAFs and other proteins Back     alignment and domain information
>KOG4682|consensus Back     alignment and domain information
>PF00917 MATH: MATH domain; InterPro: IPR002083 Although apparently functionally unrelated, intracellular TRAFs and extracellular meprins share a conserved region of about 180 residues, the meprin and TRAF homology (MATH) domain [] Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac Back     alignment and domain information
>cd03782 MATH_Meprin_Beta Meprin family, Beta subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>cd03783 MATH_Meprin_Alpha Meprin family, Alpha subunit, MATH domain; Meprins are multidomain extracellular metalloproteases capable of cleaving growth factors, cytokines, extracellular matrix proteins, and biologically active peptides Back     alignment and domain information
>smart00061 MATH meprin and TRAF homology Back     alignment and domain information
>KOG1987|consensus Back     alignment and domain information
>COG5077 Ubiquitin carboxyl-terminal hydrolase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>KOG0783|consensus Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2838|consensus Back     alignment and domain information
>KOG2716|consensus Back     alignment and domain information
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ] Back     alignment and domain information
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised Back     alignment and domain information
>KOG3473|consensus Back     alignment and domain information
>smart00512 Skp1 Found in Skp1 protein family Back     alignment and domain information
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO) Back     alignment and domain information
>KOG1863|consensus Back     alignment and domain information
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG0511|consensus Back     alignment and domain information
>smart00875 BACK BTB And C-terminal Kelch Back     alignment and domain information
>KOG1724|consensus Back     alignment and domain information
>KOG0297|consensus Back     alignment and domain information
>KOG2714|consensus Back     alignment and domain information
>KOG1778|consensus Back     alignment and domain information
>KOG1665|consensus Back     alignment and domain information
>KOG2715|consensus Back     alignment and domain information
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex [] Back     alignment and domain information
>KOG2075|consensus Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3hqi_A312 Structures Of Spop-Substrate Complexes: Insights In 1e-132
2cr2_A159 Solution Structure Of N-Terminal Domain Of Speckle- 2e-72
3ivb_A145 Structures Of Spop-Substrate Complexes: Insights In 4e-67
3hql_A145 Structures Of Spop-Substrate Complexes: Insights In 2e-66
3htm_A172 Structures Of Spop-Substrate Complexes: Insights In 7e-52
4eoz_A145 Crystal Structure Of The Spop Btb Domain Complexed 1e-46
4ap2_A297 Crystal Structure Of The Human Klhl11-cul3 Complex 4e-08
3i3n_A279 Crystal Structure Of The Btb-Back Domains Of Human 4e-07
>pdb|3HQI|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: SpopmathxBTB3-Box-Pucsbc1 Length = 312 Back     alignment and structure 
Iteration: 1

 Score =  468 bits (1204), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 237/310 (76%), Positives = 265/310 (85%)
Query: 19  KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
           KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 3   KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 62
Query: 79  LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
           LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRR FLLDE N
Sbjct: 63  LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122
Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSA 198
           GLLP+DKLT+FCEVSVV DSVNISGQ+     KVP+CRLAD LG L+E  +F+D  L  A
Sbjct: 123 GLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA 182
Query: 199 GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSXX 258
           GQEF+AHKAILAA+SPVF AMFEHEMEE K NRV+I DV+ +V +EM+ FIYTG++ +  
Sbjct: 183 GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 242
Query: 259 XXXXXXXXXXXXXXXERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINT 318
                          ERLKVMCE+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN 
Sbjct: 243 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302
Query: 319 HATEVMDTVG 328
           HAT+V++T G
Sbjct: 303 HATDVLETSG 312
>pdb|2CR2|A Chain A, Solution Structure Of N-Terminal Domain Of Speckle-Type Poz Protein Length = 159 Back     alignment and structure
>pdb|3IVB|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopmath- Macroh2asbcpep1 Length = 145 Back     alignment and structure
>pdb|3HQL|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases:spopmathx-Pucsbc1_pep2 Length = 145 Back     alignment and structure
>pdb|3HTM|A Chain A, Structures Of Spop-Substrate Complexes: Insights Into Molecular Architectures Of Btb-Cul3 Ubiquitin Ligases: Spopbtb3-Box Length = 172 Back     alignment and structure
>pdb|4EOZ|A Chain A, Crystal Structure Of The Spop Btb Domain Complexed With The Cul3 N- Terminal Domain Length = 145 Back     alignment and structure
>pdb|4AP2|A Chain A, Crystal Structure Of The Human Klhl11-cul3 Complex At 2.8a Resolution Length = 297 Back     alignment and structure
>pdb|3I3N|A Chain A, Crystal Structure Of The Btb-Back Domains Of Human Klhl11 Length = 279 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query365
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 1e-142
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 2e-80
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 1e-70
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 1e-52
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 9e-42
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 4e-34
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 2e-32
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 4e-31
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 6e-22
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 2e-21
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 5e-21
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 5e-21
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 1e-20
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 4e-20
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 8e-20
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 1e-19
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 2e-19
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 3e-19
3b84_A119 Zinc finger and BTB domain-containing protein 48; 6e-19
2vpk_A116 Myoneurin; transcription regulation, transcription 1e-18
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 2e-18
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 3e-17
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 6e-17
1d00_A168 Tumor necrosis factor receptor associated protein 5e-16
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 3e-15
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 2e-13
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 2e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-10
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-05
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 5e-08
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Length = 312 Back     alignment and structure
 Score =  405 bits (1043), Expect = e-142
 Identities = 254/310 (81%), Positives = 282/310 (90%)

Query: 19  KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
           KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 3   KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 62

Query: 79  LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
           LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRR FLLDE N
Sbjct: 63  LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEAN 122

Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRLADNLGALFEIQKFSDVTLYSA 198
           GLLP+DKLT+FCEVSVV DSVNISGQ+     KVP+CRLAD LG L+E  +F+D  L  A
Sbjct: 123 GLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRLADELGGLWENSRFTDCCLCVA 182

Query: 199 GQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSLD 258
           GQEF+AHKAILAA+SPVF AMFEHEMEE K NRV+I DV+ +V +EM+ FIYTG++ +LD
Sbjct: 183 GQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNLD 242

Query: 259 KMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINT 318
           KMADDLLAAADKYALERLKVMCE+ALC+NLS+ENAAEILILADLHSADQLKTQA++FIN 
Sbjct: 243 KMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINY 302

Query: 319 HATEVMDTVG 328
           HAT+V++T G
Sbjct: 303 HATDVLETSG 312
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Length = 172 Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Length = 145 Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Length = 145 Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Length = 109 Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Length = 155 Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Length = 256 Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} Length = 279 Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Length = 120 Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Length = 127 Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Length = 135 Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Length = 144 Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Length = 160 Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Length = 121 Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Length = 124 Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} PDB: 3ohv_A Length = 125 Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Length = 129 Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Length = 138 Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Length = 119 Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Length = 116 Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Length = 116 Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Length = 119 Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} Length = 119 Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Length = 168 Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Length = 192 Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Length = 192 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Length = 228 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Length = 522 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
3hqi_A312 Speckle-type POZ protein; SPOP, ubiquitin, puckere 100.0
3htm_A172 Speckle-type POZ protein; BTB, SPOP, ubiquitin, li 100.0
3hve_A256 Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, dis 99.97
3i3n_A279 Kelch-like protein 11; structural genomics, BTB, K 99.96
3ivv_A145 Speckle-type POZ protein; protein binding, nucleus 99.96
4eoz_A145 Speckle-type POZ protein; E3 ubiquitin ligase, nuc 99.96
2if5_A120 Zinc finger and BTB domain-containing protein 7A; 99.92
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 99.92
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 99.91
3b84_A119 Zinc finger and BTB domain-containing protein 48; 99.91
2z8h_A138 Transcription regulator protein BACH1; BTB, POZ, d 99.91
1buo_A121 POZ domain, protein (promyelocytic leukemia zinc f 99.91
2ppi_A144 Gigaxonin; BTB domain, protein degradation, struct 99.91
2vpk_A116 Myoneurin; transcription regulation, transcription 99.91
2yy9_A135 Zinc finger and BTB domain-containing protein 48; 99.9
4gjh_A178 TNF receptor-associated factor 5; TRAF domain, imm 99.9
2foj_A155 Ubiquitin carboxyl-terminal hydrolase 7; MATH doma 99.89
2q81_A119 MIZ-1 protein; BTB/POZ domain, transcription; HET: 99.89
1lb6_A160 TNF receptor-associated factor 6; TRAF6-CD40 compl 99.88
2ihc_A124 Transcription regulator protein BACH1; BRIC-A-BRAC 99.88
3ohu_A125 Transcription regulator protein BACH2; BTB/POZ dom 99.88
3ga1_A129 Nucleus accumbens-associated protein 1; BTB/POZ do 99.88
4ghu_A198 TNF receptor-associated factor 3; alpha/beta, inna 99.88
1ca9_A192 TRAF2, protein (TNF receptor associated factor 2); 99.87
2gkw_A192 TNF receptor-associated factor 3; CD40, NF-KB sign 99.87
1d00_A168 Tumor necrosis factor receptor associated protein 99.87
3fkc_A116 Transcriptional regulator kaiso; zinc finger and B 99.86
3m5b_A119 Zinc finger and BTB domain-containing protein 32; 99.85
1flk_A228 TNF receptor associated factor 3; TNF signaling, T 99.84
2f1z_A 522 Ubiquitin carboxyl-terminal hydrolase 7; hausp, US 99.8
2ast_A159 S-phase kinase-associated protein 1A; SCF-substrat 99.47
4ajy_C97 Transcription elongation factor B polypeptide 1; E 99.25
4gwm_A592 Meprin A subunit beta; mulidomain structure, hydro 99.17
1fs1_B141 SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, le 99.14
2p1m_A160 SKP1-like protein 1A; F-BOX, leucine rich repeat, 98.98
1hv2_A99 Elongin C, ELC1; protein-peptide complex, signalin 98.59
3v7d_A169 Suppressor of kinetochore protein 1; WD 40 domain, 98.55
3drz_A107 BTB/POZ domain-containing protein KCTD5; potassium 98.52
2fnj_C96 Transcription elongation factor B polypeptide 1; b 98.5
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 98.21
1vcb_B112 Protein (elongin C); tumor suppressor, cancer, ubi 98.15
3drx_A202 BTB/POZ domain-containing protein KCTD5; golgi, gr 97.56
3kvt_A115 Potassium channel protein SHAW; tetramerization do 96.13
1s1g_A124 Potassium voltage-gated channel subfamily D membe; 95.88
1nn7_A105 Potassium channel KV4.2; teteramerization domain, 95.55
1t1d_A100 Protein (potassium channel KV1.1); potassium chann 95.54
2nz0_B140 Potassium voltage-gated channel subfamily D membe; 95.3
2vkp_A109 BTB/POZ domain-containing protein 6; protein-bindi 87.21
2eqx_A105 Kelch repeat and BTB domain-containing protein 4; 81.5
1r29_A127 B-cell lymphoma 6 protein; BTB domain, transcripti 80.56
>3hqi_A Speckle-type POZ protein; SPOP, ubiquitin, puckered, nucleus, UBL conjugation pathway, protein binding, ligase; 2.62A {Homo sapiens} PDB: 3hu6_A Back     alignment and structure
Probab=100.00  E-value=4e-63  Score=453.93  Aligned_cols=311  Identities=82%  Similarity=1.252  Sum_probs=274.7

Q ss_pred             EEEEEEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCCceEEEEEEEEE
Q psy10761         18 VKVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSI   97 (365)
Q Consensus        18 ~~~~~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~~~~~~~~~~~l   97 (365)
                      .++.+++|+|+|+|||.++.+.|+++.|++|.+||++|++|+|.+||+|.++++++|+|+||.|..++.|++.|+++|+|
T Consensus         2 s~~~~~~~~w~I~nfs~~~~~~~~~i~S~~F~~gg~~~~~W~i~~yP~G~~~~~~~~lslyL~~~~~~~~~v~a~~~~~l   81 (312)
T 3hqi_A            2 SKVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSI   81 (312)
T ss_dssp             EEEEEEEEEEEETTGGGCCCCTTCCEECCCBCC--CCCCEEEEEEETTCCC--CTTEEEEEEEEEECCC-CEEEEEEEEE
T ss_pred             CceEEEEEEEEEcCcchhhhcCCCeEeeCCcccCCCCCceEEEEEECCCCCccCCCcEEEEEEEcCCCCCcEEEEEEEEE
Confidence            46789999999999999876668999999999999878899999999998877789999999999888899999999999


Q ss_pred             EeccCCccccccccceeeeccCCCcccceeeecccccccccCCCCCCeEEEEEEeEeeeccccccCCCCccccccCchhH
Q psy10761         98 LNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQSNAAQFKVPDCRL  177 (365)
Q Consensus        98 ~~~~~~~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~l  177 (365)
                      +|++++..........+.|.++.+|||.+|++|++|.++.+||+.||+++|+|+|.|..+..++++++....+.+|++++
T Consensus        82 ~~~~~~~~~~~~~~~~~~F~~~~~wG~~~Fi~~~~L~~~~~~yl~dD~l~i~~~v~v~~~~~~~~~~~~~~~~~~p~~~l  161 (312)
T 3hqi_A           82 LNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRGFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQNTMNMVKVPECRL  161 (312)
T ss_dssp             ECTTSCEEEEEECSSCEEECTTCEEEEEEEEEHHHHTCGGGCCCGGGCEEEEEEEEEEEECCCEECCCCCSSCCCCCCCH
T ss_pred             EeCCCCcccccccCCceeCCCCCCcCHHHhccHHHhhccccCeecCCEEEEEEEEEEEeccccccccccccccCCCCchH
Confidence            99998765444434567888778999999999999988889999999999999999998877778887777889999999


Q ss_pred             HHHHHHhhhcCCCccEEEEecCeEEehhHHHHhccCHHHHHhccccccccCCCeEEEccCCHHHHHHHhHhhccCCCCCc
Q psy10761        178 ADNLGALFEIQKFSDVTLYSAGQEFRAHKAILAAQSPVFMAMFEHEMEERKHNRVDIADVDADVLREMLRFIYTGRSTSL  257 (365)
Q Consensus       178 ~~~l~~l~~~~~~~Dv~i~~~~~~~~~hk~iL~~~S~~F~~l~~~~~~e~~~~~i~l~~~~~~~f~~~L~~iY~~~~~~~  257 (365)
                      .+++..++.++.++||+|.++|++|+|||.|||++|+||++||.+++.|+....|.|+++++++|+.+|+|+|++.+++.
T Consensus       162 ~~~l~~l~~~~~~~Dv~l~v~~~~f~~Hk~vLaa~S~~F~~~f~~~~~e~~~~~i~l~~~~~~~f~~~L~~iYt~~~~~~  241 (312)
T 3hqi_A          162 ADELGGLWENSRFTDCCLCVAGQEFQAHKAILAARSPVFSAMFEHEMEESKKNRVEINDVEPEVFKEMMCFIYTGKAPNL  241 (312)
T ss_dssp             HHHHHHHHHTTCSCCEEEEETTEEEEECHHHHHHHCHHHHHHTTC-----CCSEEEECSSCHHHHHHHHHHHHHSCCTTH
T ss_pred             HHHHHHHHhCCCCCceEEEECCEEEeHHHHHHHHcCHHHHHHhccCccccCCceEEecCCCHHHHHHHHHhhcCCCCCCh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcChHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCcHHHHHHHHHHHHHcHHHHHCCcc
Q psy10761        258 DKMADDLLAAADKYALERLKVMCEEALCTNLSIENAAEILILADLHSADQLKTQAIEFINTHATEVMDTVG  328 (365)
Q Consensus       258 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~l~~~~~~~~l~~a~~~~~~~L~~~~~~~i~~~~~~v~~~~~  328 (365)
                      .+++.+|+.+|++|+++.|+..|+++|.+.++.+|+..++.+|.+|++..|++.|++||..|+.+++++++
T Consensus       242 ~~~~~~ll~~A~~~~~~~l~~~c~~~l~~~~~~~n~~~~l~~A~~~~~~~L~~~~~~~i~~~~~~v~~s~g  312 (312)
T 3hqi_A          242 DKMADDLLAAADKYALERLKVMCEDALCSNLSVENAAEILILADLHSADQLKTQAVDFINYHATDVLETSG  312 (312)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTTHHHHHHHHHHTTCHHHHHHHHHHHHHTC--------
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHccCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999987753
>3htm_A Speckle-type POZ protein; BTB, SPOP, ubiquitin, ligase, nucleus, UBL conjugation pathway, protein binding; 2.50A {Homo sapiens} Back     alignment and structure
>3hve_A Gigaxonin; ubiquitin, cytoplasm, cytoskeleton, disease mutation, kelch repeat, neurodegeneration, phosphoprotein, polymorphism, UBL conjugation; 2.80A {Homo sapiens} PDB: 3hve_B Back     alignment and structure
>3i3n_A Kelch-like protein 11; structural genomics, BTB, KLHL11A, SGC, structural genomics consortium, kelch repeat, secreted, protein binding; 2.60A {Homo sapiens} PDB: 4ap2_A* 4apf_A Back     alignment and structure
>3ivv_A Speckle-type POZ protein; protein binding, nucleus, UBL conjugation pathway, ligase; 1.25A {Homo sapiens} SCOP: b.8.1.1 PDB: 3ivq_A 3ivb_A 3hsv_A 3hqh_A 3hqm_A 3hql_A 2cr2_A Back     alignment and structure
>4eoz_A Speckle-type POZ protein; E3 ubiquitin ligase, nucleus, protein binding; 2.40A {Homo sapiens} Back     alignment and structure
>2if5_A Zinc finger and BTB domain-containing protein 7A; POZ domain, POK, proto oncogene, transcription F transcription; 2.00A {Homo sapiens} PDB: 2nn2_A Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>3b84_A Zinc finger and BTB domain-containing protein 48; krueppel related zinc finger protein 3, HKR3, ZBTB48, Z finger, oncogene; 1.74A {Homo sapiens} Back     alignment and structure
>2z8h_A Transcription regulator protein BACH1; BTB, POZ, disulfide bond, activator, DNA-binding, nucleus, phosphorylation, repressor; 2.50A {Mus musculus} Back     alignment and structure
>1buo_A POZ domain, protein (promyelocytic leukemia zinc finger prote; protein-protein interaction domain, transcriptional represso finger protein; 1.90A {Homo sapiens} SCOP: d.42.1.1 PDB: 1cs3_A Back     alignment and structure
>2ppi_A Gigaxonin; BTB domain, protein degradation, structural genomics, struct genomics consortium, SGC, structural protein; 2.40A {Homo sapiens} Back     alignment and structure
>2vpk_A Myoneurin; transcription regulation, transcription, metal-binding, alternative splicing, zinc, nucleus, BTB domain, zinc-finger, DNA-binding; 2.00A {Homo sapiens} Back     alignment and structure
>2yy9_A Zinc finger and BTB domain-containing protein 48; mouse, HKR3, structural genomics, NPPSFA; 2.60A {Mus musculus} Back     alignment and structure
>4gjh_A TNF receptor-associated factor 5; TRAF domain, immune system; 2.81A {Mus musculus} Back     alignment and structure
>2foj_A Ubiquitin carboxyl-terminal hydrolase 7; MATH domain, hydrolase; 1.60A {Homo sapiens} PDB: 1yze_A 1yy6_A 2foo_A 2fop_A 3mqr_A 3mqs_C 2f1w_A 2f1x_A 2f1y_A 2xxn_A Back     alignment and structure
>2q81_A MIZ-1 protein; BTB/POZ domain, transcription; HET: PG4; 2.10A {Homo sapiens} PDB: 3m52_A Back     alignment and structure
>1lb6_A TNF receptor-associated factor 6; TRAF6-CD40 complex, signaling protein; 1.80A {Homo sapiens} SCOP: b.8.1.1 PDB: 1lb5_A 1lb4_A Back     alignment and structure
>2ihc_A Transcription regulator protein BACH1; BRIC-A-BRAC domain,transcription factor, protein-PROT interaction; 2.44A {Homo sapiens} Back     alignment and structure
>3ohu_A Transcription regulator protein BACH2; BTB/POZ domain; 2.10A {Homo sapiens} SCOP: d.42.1.0 PDB: 3ohv_A Back     alignment and structure
>3ga1_A Nucleus accumbens-associated protein 1; BTB/POZ domain, phosphoprotein, repressor, transcri transcription regulation; 2.10A {Homo sapiens} Back     alignment and structure
>4ghu_A TNF receptor-associated factor 3; alpha/beta, innate immunity, IFN pathway, immune system; 2.20A {Mus musculus} PDB: 2gkw_A 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1ca9_A TRAF2, protein (TNF receptor associated factor 2); TNF signaling, TRAF, adapter protein, cell surviVal; 2.30A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1qsc_A 1czz_A Back     alignment and structure
>2gkw_A TNF receptor-associated factor 3; CD40, NF-KB signaling, BAFF receptor, TRAF3, apoptosis; 2.70A {Homo sapiens} PDB: 1kzz_A 1l0a_A 1zms_A 1rf3_A Back     alignment and structure
>1d00_A Tumor necrosis factor receptor associated protein 2; B-sandwich, protein-peptide complex, apoptosis; 2.00A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1ca4_A 1d0j_A 1f3v_B 1czy_A 1d01_A 1d0a_A Back     alignment and structure
>3fkc_A Transcriptional regulator kaiso; zinc finger and BTB domain containing 33, kaiso transcriptio ZNF-kaiso, ZNF348,wugsc:H_DJ525N14.1; 1.70A {Homo sapiens} PDB: 3m4t_A 3m8v_A Back     alignment and structure
>3m5b_A Zinc finger and BTB domain-containing protein 32; POZ domain, BTB/POZ domain, ZBTB32, zinc finger domain-containing protein 32; 2.00A {Homo sapiens} SCOP: d.42.1.0 Back     alignment and structure
>1flk_A TNF receptor associated factor 3; TNF signaling, TRAF3, CD40-binding protein, apoptosis; 2.80A {Homo sapiens} SCOP: b.8.1.1 h.1.2.1 PDB: 1fll_A Back     alignment and structure
>2f1z_A Ubiquitin carboxyl-terminal hydrolase 7; hausp, USP7, UBP, deubiquitinating enzyme, substrate recognition; 3.20A {Homo sapiens} Back     alignment and structure
>4ajy_C Transcription elongation factor B polypeptide 1; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 2izv_C 3dcg_B 3zrc_B* 3zrf_B 3ztc_B* 3ztd_B* 3zun_B* 2c9w_C 4awj_B* 4b95_B* 4b9k_B* 2fnj_C 1lqb_B 1lm8_C 2jz3_C 2xai_B 4b9k_E* Back     alignment and structure
>4gwm_A Meprin A subunit beta; mulidomain structure, hydrolase; HET: NAG BMA FUC MAN; 1.85A {Homo sapiens} PDB: 4gwn_A* Back     alignment and structure
>1fs1_B SKP1, cyclin A/CDK2-associated P45; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.157.1.1 d.42.1.1 PDB: 1fs2_B 1ldk_D Back     alignment and structure
>2p1m_A SKP1-like protein 1A; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_A* 2p1o_A* 2p1p_A* 2p1q_A* 3c6n_A* 3c6o_A* 3c6p_A* 3ogk_A* 3ogl_A* 3ogm_A* Back     alignment and structure
>1hv2_A Elongin C, ELC1; protein-peptide complex, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.42.1.1 Back     alignment and structure
>3v7d_A Suppressor of kinetochore protein 1; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_A* 3mks_A* Back     alignment and structure
>3drz_A BTB/POZ domain-containing protein KCTD5; potassium channel domain T1, pentamer, unkno function; 1.90A {Homo sapiens} Back     alignment and structure
>2fnj_C Transcription elongation factor B polypeptide 1; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.42.1.1 PDB: 1lqb_B 1lm8_C 2jz3_C 2xai_B 2c9w_C 2izv_C 3dcg_B 3zrc_B* 3zrf_B Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1vcb_B Protein (elongin C); tumor suppressor, cancer, ubiquitin, beta sandwich, transcription, transcriptional elongation; 2.70A {Homo sapiens} SCOP: d.42.1.1 Back     alignment and structure
>3drx_A BTB/POZ domain-containing protein KCTD5; golgi, grAsp55, potassium channel domain T1, pentameric assembly, HOST-virus interaction, nucleus; 3.11A {Homo sapiens} PDB: 3dry_A Back     alignment and structure
>3kvt_A Potassium channel protein SHAW; tetramerization domain, molecular recogni zinc-binding; 2.00A {Aplysia californica} SCOP: d.42.1.2 Back     alignment and structure
>1s1g_A Potassium voltage-gated channel subfamily D membe; K+ channels, tetramerization domain, T1 domain, transport PR; 2.60A {Homo sapiens} SCOP: d.42.1.2 Back     alignment and structure
>1nn7_A Potassium channel KV4.2; teteramerization domain, voltage gated potassium channel SHAL, membrane protein; 2.10A {Rattus norvegicus} SCOP: d.42.1.2 Back     alignment and structure
>1t1d_A Protein (potassium channel KV1.1); potassium channels, tetramerization domain, aplysia KV1.1, proton transport, membrane protein; 1.51A {Aplysia californica} SCOP: d.42.1.2 PDB: 1eod_A 1eof_A 1eoe_A 1a68_A 1qdv_A 1exb_E* 1qdw_A 1dsx_A Back     alignment and structure
>2nz0_B Potassium voltage-gated channel subfamily D membe; KV4.3, kchip1, membrane protein; 3.20A {Homo sapiens} PDB: 2i2r_A Back     alignment and structure
>2vkp_A BTB/POZ domain-containing protein 6; protein-binding; 1.9A {Homo sapiens} Back     alignment and structure
>2eqx_A Kelch repeat and BTB domain-containing protein 4; BACK domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Back     alignment and structure
>1r29_A B-cell lymphoma 6 protein; BTB domain, transcriptional repression, transcription; 1.30A {Homo sapiens} SCOP: d.42.1.1 PDB: 1r28_A 1r2b_A 3bim_A 3lbz_A* 3e4u_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 365
d2cr2a1146 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {H 1e-50
d1czya1152 b.8.1.1 (A:350-501) TNF receptor associated factor 1e-23
d1r29a_122 d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB 3e-23
d1l0aa1155 b.8.1.1 (A:350-504) TNF receptor associated factor 6e-23
d1lb6a_155 b.8.1.1 (A:) TNF receptor associated factor 6 (TRA 7e-22
d1buoa_121 d.42.1.1 (A:) Promyelocytic leukaemia zinc finger 1e-21
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Length = 146 Back     information, alignment and structure

class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  164 bits (416), Expect = 1e-50
 Identities = 137/146 (93%), Positives = 142/146 (97%)

Query: 19  KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLY 78
           KVVKFSYMWTINNFSFCREEMGEV+KSSTFS+GANDKLKWCLRVNPKGLDEESKDYLSLY
Sbjct: 1   KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLY 60

Query: 79  LLLVSCNKTEVRAKFKFSILNAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELN 138
           LLLVSC K+EVRAKFKFSILNAK EETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDE N
Sbjct: 61  LLLVSCPKSEVRAKFKFSILNAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEAN 120

Query: 139 GLLPEDKLTIFCEVSVVADSVNISGQ 164
           GLLP+DKLT+FCEVSVV DSVNISGQ
Sbjct: 121 GLLPDDKLTLFCEVSVVQDSVNISGQ 146
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Length = 152 Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 122 Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Length = 155 Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Length = 121 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query365
d2cr2a1146 Speckle-type poz protein SPOP {Human (Homo sapiens 99.97
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 99.91
d1buoa_121 Promyelocytic leukaemia zinc finger (PLZF) protein 99.9
d1czya1152 TNF receptor associated factor 2 (TRAF2) {Human (H 99.89
d1l0aa1155 TNF receptor associated factor 3 (TRAF3) {Human (H 99.87
d1lb6a_155 TNF receptor associated factor 6 (TRAF6) {Human (H 99.86
d2c9wc196 Elongin C {Human (Homo sapiens) [TaxId: 9606]} 97.98
d1hv2a_99 Elongin C {Baker's yeast (Saccharomyces cerevisiae 97.93
d1nn7a_105 Potassium channel kv4.2 {Rat (Rattus norvegicus) [ 97.12
d3kvta_103 akv3.1 voltage-gated potassium channel {California 96.96
d1t1da_100 Shaker potassium channel {California sea hare (Apl 96.82
d1nexa272 Centromere DNA-binding protein complex Cbf3 subuni 95.74
d1fs1b261 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 95.58
d1fs1b155 Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sa 92.39
d1nexa170 Centromere DNA-binding protein complex Cbf3 subuni 90.3
d1r29a_122 B-cell lymphoma 6 (Bcl6) protein BTB domain {Human 80.71
>d2cr2a1 b.8.1.1 (A:8-153) Speckle-type poz protein SPOP {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All beta proteins
fold: TRAF domain-like
superfamily: TRAF domain-like
family: MATH domain
domain: Speckle-type poz protein SPOP
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.4e-30  Score=209.26  Aligned_cols=146  Identities=94%  Similarity=1.447  Sum_probs=130.7

Q ss_pred             EEEEEEEEEEEcccccccccCCCeeeccccccCCCCCccEEEEEecCCCCCCCCCeEEEEEEeecCCCceEEEEEEEEEE
Q psy10761         19 KVVKFSYMWTINNFSFCREEMGEVLKSSTFSAGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCNKTEVRAKFKFSIL   98 (365)
Q Consensus        19 ~~~~~~~~w~I~nfs~~~~~~~~~~~S~~F~~~g~~~~~W~l~l~p~g~~~~~~~~lsl~L~~~~~~~~~~~~~~~~~l~   98 (365)
                      ++++++|+|+|+||+.++++.|+++.||.|.+||+++++|+|.+||+|.++++++++|+||.+..++.|++.++++|+|+
T Consensus         1 ~v~~~~~~W~I~nfs~~~~~~~~~~~Sp~F~~~~~~~~~W~l~lyp~G~~~~~~~~lSv~L~~~~~~~~~v~~~~~~~l~   80 (146)
T d2cr2a1           1 KVVKFSYMWTINNFSFCREEMGEVIKSSTFSSGANDKLKWCLRVNPKGLDEESKDYLSLYLLLVSCPKSEVRAKFKFSIL   80 (146)
T ss_dssp             CEEEEEEEEEEETGGGCCCCSSCCEECCCBCSSSCCSCCBEEEECTTCSSSSSSSBCCEEEECCCCSSSEEEEECEEEEE
T ss_pred             CeeEEEEEEEECCchHHhhcCCCEEECCCEEeCCcCCeEEEEEEEECCCCCCCCCEEEEEEEeccCCCceEEEEEEEEEE
Confidence            47899999999999998877789999999999998889999999999988888899999999999889999999999999


Q ss_pred             eccCCccccccccceeeeccCCCcccceeeecccccccccCCCCCCeEEEEEEeEeeeccccccCC
Q psy10761         99 NAKREETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDELNGLLPEDKLTIFCEVSVVADSVNISGQ  164 (365)
Q Consensus        99 ~~~~~~~~~~~~~~~~~f~~~~~~G~~~fi~~~~l~~~~~~~l~dd~l~i~~~v~v~~~~~~~~~~  164 (365)
                      |++++............+..+.+|||++|+++++|.++.+||+.||.++|+|+|.|..+..+.+||
T Consensus        81 n~~~~~~~~~~~~~~~~~~~~~~~G~~~fi~~~~l~~~~~g~l~~d~l~I~~~I~v~~e~~~~s~~  146 (146)
T d2cr2a1          81 NAKGEETKAMESQRAYRFVQGKDWGFKKFIRRDFLLDEANGLLPDDKLTLFCEVSVVQDSVNISGQ  146 (146)
T ss_dssp             CTTSCEEEEEECSCCEEEETTCEEEESCCSBHHHHSCTTTTSCTTSEEEEEEEEEEECCSCCCCCC
T ss_pred             cCCCCcccceEecceEeCCCCCeeeccEEEEHHHhcCcccCceeCCEEEEEEEEEEEeCCCCCCCC
Confidence            998877655555556667788899999999999999989999999999999999999887766554
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1buoa_ d.42.1.1 (A:) Promyelocytic leukaemia zinc finger (PLZF) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1czya1 b.8.1.1 (A:350-501) TNF receptor associated factor 2 (TRAF2) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1l0aa1 b.8.1.1 (A:350-504) TNF receptor associated factor 3 (TRAF3) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1lb6a_ b.8.1.1 (A:) TNF receptor associated factor 6 (TRAF6) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2c9wc1 d.42.1.1 (C:17-112) Elongin C {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hv2a_ d.42.1.1 (A:) Elongin C {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nn7a_ d.42.1.2 (A:) Potassium channel kv4.2 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d3kvta_ d.42.1.2 (A:) akv3.1 voltage-gated potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1t1da_ d.42.1.2 (A:) Shaker potassium channel {California sea hare (Aplysia californica) [TaxId: 6500]} Back     information, alignment and structure
>d1nexa2 d.42.1.1 (A:4-103) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1fs1b2 d.42.1.1 (B:2-68) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1fs1b1 a.157.1.1 (B:86-140) Cyclin A/CDK2-associated p45, Skp1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nexa1 a.157.1.1 (A:116-185) Centromere DNA-binding protein complex Cbf3 subunit D, CBF3D {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1r29a_ d.42.1.1 (A:) B-cell lymphoma 6 (Bcl6) protein BTB domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure