Psyllid ID: psy10778
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | 2.2.26 [Sep-21-2011] | |||||||
| P97412 | 3788 | Lysosomal-trafficking reg | yes | N/A | 0.953 | 0.139 | 0.468 | 1e-141 | |
| Q99698 | 3801 | Lysosomal-trafficking reg | yes | N/A | 0.953 | 0.139 | 0.461 | 1e-140 | |
| Q9TTK4 | 3796 | Lysosomal-trafficking reg | yes | N/A | 0.953 | 0.139 | 0.456 | 1e-140 | |
| Q86JF2 | 4118 | BEACH domain-containing p | yes | N/A | 0.854 | 0.115 | 0.346 | 3e-82 | |
| Q8IZQ1 | 3526 | WD repeat and FYVE domain | no | N/A | 0.784 | 0.123 | 0.355 | 1e-71 | |
| Q6VNB8 | 3508 | WD repeat and FYVE domain | no | N/A | 0.784 | 0.124 | 0.353 | 3e-70 | |
| Q55DM1 | 3619 | BEACH domain-containing p | no | N/A | 0.764 | 0.117 | 0.338 | 6e-69 | |
| Q6ZS81 | 3184 | WD repeat- and FYVE domai | no | N/A | 0.778 | 0.135 | 0.332 | 7e-65 | |
| Q54U63 | 2491 | BEACH domain-containing p | no | N/A | 0.913 | 0.203 | 0.321 | 4e-61 | |
| Q7LKZ7 | 2609 | Beige protein homolog 1 O | yes | N/A | 0.825 | 0.175 | 0.304 | 8e-60 |
| >sp|P97412|LYST_MOUSE Lysosomal-trafficking regulator OS=Mus musculus GN=Lyst PE=1 SV=1 | Back alignment and function desciption |
|---|
Score = 502 bits (1292), Expect = e-141, Method: Compositional matrix adjust.
Identities = 264/563 (46%), Positives = 357/563 (63%), Gaps = 33/563 (5%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3216 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3275
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3276 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3335
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ HWIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3336 HVSQNICHWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3395
Query: 190 QTPRQLFKSAH------PMNVKKLTPA----------QESRVEV--------IPNIRGLV 225
QTPRQLF +AH +N++ PA +E+R V + I+GL
Sbjct: 3396 QTPRQLFHTAHASRPGAKLNIEGELPAAVGLLVQFAFRETREPVKEVTHPSPLSWIKGLK 3455
Query: 226 WGSYVGSPDEPPPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISS 285
WG YVGSP P P + + H L L T + GL++ LL +Y+K++ +++
Sbjct: 3456 WGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYNKEQGVRSMNN 3515
Query: 286 LNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS 345
N+ + ++ W DN++RLK + P I+ + + PD L+ G
Sbjct: 3516 TNI--QWSAILSWGYADNILRLKSKQSEPPINFIQSSQQHQVTSCAWVPDSCQLFTGSKC 3573
Query: 346 GNILVYEYELNAST-NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404
G I Y L +ST ++IE + L GH+ +T L +C +SV +S S DGTC++WD+
Sbjct: 3574 GVITAYTNRLTSSTPSEIEM-ESQMHLYGHTEEITGLCVCKPYSVMISVSRDGTCIVWDL 3632
Query: 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASE 464
N + Y++ + +PV+ V+ SET+G+IA+V + GGS LRL T+N L+ +
Sbjct: 3633 NRLCYVQSL--AGHKSPVTAVSASETSGDIATVCDSA-GGGSDLRLWTVNGDLVGHVHCR 3689
Query: 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCD 523
I SV FSN PEGVS NVI G +G ++LWS + L + + P+I++T+SCD
Sbjct: 3690 EIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISLTFSCD 3749
Query: 524 SQHLYASNTEGLVIIWESSSHNR 546
HLY +N+EG VI W R
Sbjct: 3750 GHHLYTANSEGTVIAWCRKDQQR 3772
|
May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules. Mus musculus (taxid: 10090) |
| >sp|Q99698|LYST_HUMAN Lysosomal-trafficking regulator OS=Homo sapiens GN=LYST PE=1 SV=3 | Back alignment and function description |
|---|
Score = 499 bits (1286), Expect = e-140, Method: Compositional matrix adjust.
Identities = 260/563 (46%), Positives = 355/563 (63%), Gaps = 33/563 (5%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3229 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3288
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3289 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3348
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3349 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3408
Query: 190 QTPRQLFKSAH------PMNVKKLTPA----------QESRVEV--------IPNIRGLV 225
QTPRQLF AH +N++ PA +E+R +V + I+GL
Sbjct: 3409 QTPRQLFHMAHVSRPGAKLNIEGELPAAVGLLVQFAFRETREQVKEITYPSPLSWIKGLK 3468
Query: 226 WGSYVGSPDEPPPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISS 285
WG YVGSP P P + + H L L T + GL++ LL +Y K++ ++S
Sbjct: 3469 WGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNS 3528
Query: 286 LNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS 345
++ + ++ W DN++RLK + P I+ + + PD L+ G
Sbjct: 3529 TDI--QWSAILSWGYADNILRLKSKQSEPPVNFIQSSQQYQVTSCAWVPDSCQLFTGSKC 3586
Query: 346 GNILVYEYELNAST-NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404
G I Y +ST ++IE + L GH+ +T L++C +S+ +S S DGTC++WD+
Sbjct: 3587 GVITAYTNRFTSSTPSEIEM-ETQIHLYGHTEEITSLFVCKPYSILISVSRDGTCIIWDL 3645
Query: 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASE 464
N + Y++ + +PV+ V+ SET+G+IA+V + GGS LRL T+N L+ +
Sbjct: 3646 NRLCYVQSL--AGHKSPVTAVSASETSGDIATVCDSA-GGGSDLRLWTVNGDLVGHVHCR 3702
Query: 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCD 523
I SV FSN PEGVS NVI G +G ++LWS + L + + P+I++T+SCD
Sbjct: 3703 EIICSVAFSNQPEGVSINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIISLTFSCD 3762
Query: 524 SQHLYASNTEGLVIIWESSSHNR 546
HLY +N++G VI W R
Sbjct: 3763 GHHLYTANSDGTVIAWCRKDQQR 3785
|
May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules. Homo sapiens (taxid: 9606) |
| >sp|Q9TTK4|LYST_BOVIN Lysosomal-trafficking regulator OS=Bos taurus GN=LYST PE=1 SV=1 | Back alignment and function description |
|---|
Score = 498 bits (1283), Expect = e-140, Method: Compositional matrix adjust.
Identities = 257/563 (45%), Positives = 355/563 (63%), Gaps = 33/563 (5%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3224 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3283
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3284 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3343
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3344 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3403
Query: 190 QTPRQLFKSAH------PMNVKKLTPA----------QESRVEV--------IPNIRGLV 225
QTPRQLF+SAH +N++ PA +E+R +V + I+GL
Sbjct: 3404 QTPRQLFQSAHASRPGSKLNIEGELPAAVGLLVQFAFRETREQVKEITYPSPLSWIKGLK 3463
Query: 226 WGSYVGSPDEPPPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISS 285
WG YVGSP P P + + H L L T + GL++ LL +Y K++ ++S
Sbjct: 3464 WGEYVGSPSAPVPVVCFSQPHGERFGSLQALPTRAICGLSRNFCLLMTYSKEQGVRSMNS 3523
Query: 286 LNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS 345
++ + ++ W DN++RLK + P I+ + + PD L+ G
Sbjct: 3524 TDI--QWSAILSWGYADNILRLKSKQSEPPINFIQSSQQYQVTSCAWVPDSCQLFTGSKC 3581
Query: 346 GNILVYEYELNAST-NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404
G I Y + T ++IE + L GH+ ++ L++C +S+ +S S DGTC++WD+
Sbjct: 3582 GVITAYSNRFTSGTPSEIEM-ESQIHLYGHTEEISSLFVCKPYSIMISVSRDGTCIIWDL 3640
Query: 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASE 464
N + Y++ + +PV+ V+ SET G+IA+V + GGS LRL T+N L+ +
Sbjct: 3641 NRLCYVQSL--AGHKSPVTAVSASETTGDIATVCDSA-GGGSDLRLWTVNGDLVGHVHCR 3697
Query: 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCD 523
I SV FSN PEG+S NVI G +G ++LWS + L + + P++++T+SCD
Sbjct: 3698 EIICSVAFSNQPEGISINVIAGGLENGIVRLWSTWDLKPVREITFPKSNKPIVSLTFSCD 3757
Query: 524 SQHLYASNTEGLVIIWESSSHNR 546
HLY +N++G VI W R
Sbjct: 3758 GHHLYTANSDGTVIAWCRKDQQR 3780
|
May be required for sorting endosomal resident proteins into late multivesicular endosomes by a mechanism involving microtubules. Bos taurus (taxid: 9913) |
| >sp|Q86JF2|LVSB_DICDI BEACH domain-containing protein lvsB OS=Dictyostelium discoideum GN=lvsB PE=4 SV=1 | Back alignment and function description |
|---|
Score = 306 bits (783), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 204/589 (34%), Positives = 292/589 (49%), Gaps = 114/589 (19%)
Query: 8 VNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSE 67
+N++PYHYGSHYSN G+VLHFLVR+ PFTS F+++Q FD+PDR FH++A +W L+SS
Sbjct: 3585 MNEKPYHYGSHYSNIGSVLHFLVRLQPFTSYFIDFQGGRFDVPDRAFHSIAQSWNLSSSI 3644
Query: 68 STTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSL 126
S +DVKELIPE FYL+D LVN+ F G++QNG +VD VILPPWA +DPR FI H ++L
Sbjct: 3645 SNSDVKELIPEFFYLSDFLVNSNKFFMGIKQNGVKVDDVILPPWAHNDPRLFIKKHNEAL 3704
Query: 127 ESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMI 185
E + VSENL HWIDL+FGYKQ G+AAV A N+F P TY G DI +I D L R A I
Sbjct: 3705 ECKYVSENLHHWIDLLFGYKQQGEAAVKAHNMFFPLTYEGAVDIDSIEDQLNRDAAVAQI 3764
Query: 186 RTYGQTPRQLFKSAHPMN--VKKLTPAQES---RVEVIPNIRGLVWGSYVGS----PDEP 236
+YGQTP+Q+F HP K + Q+S + E + + + S +GS D
Sbjct: 3765 HSYGQTPKQIFTKPHPKKNWSKTIRLTQDSIFTKPERLTSYIMFQYRSPIGSITIANDSS 3824
Query: 237 P---------------PCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKD---- 277
P I W H +N LR N + K +++ + D
Sbjct: 3825 PIHLTPQRILFFPDNNKSISWGHWDQN-------LRVNSI-DTGKVLSIIEVLNDDIICG 3876
Query: 278 ---KNTNLISSLNVIGAGAGMI-CWNECDNLIRLKMSKELPATPVIRPPLGATIATATTA 333
KN L V G AG + W C+N TI T
Sbjct: 3877 DITKNGRLF----VTGGTAGTVKVWKRCNN--------------------DGTIMTRKER 3912
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
D +LW + L GH+ + + + +S+ VS
Sbjct: 3913 GDNLSLW----------------------------STLYGHTNSILCVTVSQEYSIIVSG 3944
Query: 394 SEDGTCLLWDINTIGYIRE------IPCVDPNTPVSHVTMSETN---------GEIASVL 438
S+D C++WD+N + YI + CV + ++ ETN G S
Sbjct: 3945 SKDSNCIIWDLNRLTYINSLQHDHPVTCVQVSPTFGYIATFETNIYNKQNNNSGGGGSKN 4004
Query: 439 QTTKTGGSILRLHTINAQLIT--SLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496
+ G LRL +IN L+ + ++ R+ + F++ +GV+ N+++TG GTI LW
Sbjct: 4005 DNSINGSGCLRLWSINGTLLAKQNFVND-RVNCMIFTSTIQGVNTNLLITGMESGTIILW 4063
Query: 497 SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545
+ + L + TL + + +AV S D+ L + + GL+ S S +
Sbjct: 4064 NAWNLQKIRTLVSKSTITALAV--SKDNTQLISGDINGLIECLSSRSFD 4110
|
Involved in negative regulation of lysosome biogenesis, by limiting the heterotypic fusion of early endosomes and postlysosomal compartments. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q8IZQ1|WDFY3_HUMAN WD repeat and FYVE domain-containing protein 3 OS=Homo sapiens GN=WDFY3 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 271 bits (692), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 181/509 (35%), Positives = 248/509 (48%), Gaps = 73/509 (14%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
YHYG+HYS++ V +LVR+ PFT +FL Q +FDL DR FH++ W S + DV
Sbjct: 2784 YHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADV 2843
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQSLESELV 131
KELIPE FYL + L N+ FD G +QNG ++ VILPPWA DPR FI VHR++LE + V
Sbjct: 2844 KELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYV 2903
Query: 132 SENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQ 190
S +L WIDL+FGYKQ G AAV+A+NVFH Y G DI I DPL+ TA I +GQ
Sbjct: 2904 SAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQ 2963
Query: 191 TPRQLFKSAH-PMNVKKLTPAQESRVEVIP-------------NIRGLVWGSYVGSPDEP 236
P+QLFK H P V+ + + V+P N+R + + V EP
Sbjct: 2964 IPKQLFKKPHPPKRVRSRLNGDNAGISVLPGSTSDKIFFHHLDNLRPSL--TPVKELKEP 3021
Query: 237 PPCIVWKHKHRNPVSK---LVPLRTNDVF--GLAKFTTLLHSYHKDKNTNLISSLNVIGA 291
IV K V + L+P N F G A + L +Y DK + L+ G
Sbjct: 3022 VGQIVCTDKGILAVEQNKVLIPPTWNKTFAWGYADLSCRLGTYESDKAMTVYECLSEWGQ 3081
Query: 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVY 351
IC N P L T T+T +V
Sbjct: 3082 ILCAICPN---------------------PKLVITGGTST-----------------VVC 3103
Query: 352 EYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR 411
+E+ S K + LLGH+ VT + + VS S D TC++WD+N + ++
Sbjct: 3104 VWEMGTSKEKAKTVTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT 3163
Query: 412 EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL----ASELRI 467
++ PVS + ++E G+I S G+ + + +IN I S+ +I
Sbjct: 3164 QLR--GHRAPVSALCINELTGDIVSC------AGTYIHVWSINGNPIVSVNTFTGRSQQI 3215
Query: 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496
S E +QNVIVTGHSDG ++ W
Sbjct: 3216 ICCCMSEMNEWDTQNVIVTGHSDGVVRFW 3244
|
Homo sapiens (taxid: 9606) |
| >sp|Q6VNB8|WDFY3_MOUSE WD repeat and FYVE domain-containing protein 3 OS=Mus musculus GN=Wdfy3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 266 bits (680), Expect = 3e-70, Method: Compositional matrix adjust.
Identities = 180/509 (35%), Positives = 246/509 (48%), Gaps = 73/509 (14%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
YHYG+HYS++ V +LVR+ PFT +FL Q +FDL DR FH++ W S + DV
Sbjct: 2766 YHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWYSASKHNMADV 2825
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQSLESELV 131
KELIPE FYL + L N+ FD G +QNG ++ VILPPWA DPR FI VHR++LE + V
Sbjct: 2826 KELIPEFFYLPEFLFNSNNFDLGCKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYV 2885
Query: 132 SENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQ 190
S +L WIDL+FGYKQ G AAV+A+NVFH Y G DI I DPL+ TA I +GQ
Sbjct: 2886 SAHLHEWIDLIFGYKQQGPAAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQ 2945
Query: 191 TPRQLFKSAH-PMNVKKLTPAQESRVEVIP-------------NIRGLVWGSYVGSPDEP 236
P+QLFK H P V+ + V P N+R + + V EP
Sbjct: 2946 IPKQLFKKPHPPKRVRSRLNGDNIGISVPPGATSDKIFFHHLDNLRPSL--TPVKELKEP 3003
Query: 237 PPCIVWKHKHRNPVSK---LVPLRTNDVF--GLAKFTTLLHSYHKDKNTNLISSLNVIGA 291
IV K V + L+P N F G A + L +Y DK + L+ G
Sbjct: 3004 VGQIVCTDKGILAVEQNKVLIPPAWNKTFAWGYADLSCRLGTYESDKAVTVYECLSEWGQ 3063
Query: 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVY 351
+C N P L T T+T +V
Sbjct: 3064 ILCAVCPN---------------------PKLVITGGTST-----------------VVC 3085
Query: 352 EYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR 411
+E+ S K + LLGH+ VT + + VS S D TC++WD+N + ++
Sbjct: 3086 VWEMGTSKEKAKPLTLKQALLGHTDTVTCATASLAYHIIVSGSRDRTCIIWDLNKLSFLT 3145
Query: 412 EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL----ASELRI 467
++ PVS + ++E G+I S G+ + + +IN I S+ +I
Sbjct: 3146 QLR--GHRAPVSALCINELTGDIVSC------AGTYIHVWSINGNPIVSVNTFTGRSQQI 3197
Query: 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496
S E +QNVIVTGHSDG ++ W
Sbjct: 3198 VCCCMSEMNEWDTQNVIVTGHSDGVVRFW 3226
|
Mus musculus (taxid: 10090) |
| >sp|Q55DM1|LVSA_DICDI BEACH domain-containing protein lvsA OS=Dictyostelium discoideum GN=lvsA PE=4 SV=2 | Back alignment and function description |
|---|
Score = 262 bits (669), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 166/490 (33%), Positives = 255/490 (52%), Gaps = 65/490 (13%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
+HYG+HYS++ VL++L+R+ PFT FL Q +D PDR F ++ W +S ST V
Sbjct: 3078 FHYGTHYSSAAIVLYYLIRLEPFTQHFLKLQGGRWDQPDRLFSSITEAWASSSQGSTGVV 3137
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQSLESELV 131
ELIPE +YL + LVNN F+FG +Q G+ +D +ILPPWA P+ FI +HR++LES+ V
Sbjct: 3138 MELIPEFYYLDEFLVNNNKFNFGTKQGGEPIDDIILPPWAKGSPQEFIKLHRKALESDYV 3197
Query: 132 SENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQ 190
SE+L WIDL+FGY+Q GKAA D++NVF+ TY G +I AI DP+E+ A I +GQ
Sbjct: 3198 SEHLHEWIDLIFGYRQQGKAADDSLNVFYYLTYEGAVNIDAISDPVEKAATIAQINNFGQ 3257
Query: 191 TPRQLFKSAHPMNVKKLTPAQESRVEVIPNIRGLVWGSYVGSPDEPPPCIVWKHKHRNPV 250
TP+QLF H P + + + +P + G+++ EP I
Sbjct: 3258 TPKQLFDKPH--------PKRNATLMGLPFYAKALTGNFIKDIGEPVGQI---------- 3299
Query: 251 SKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDNLIRLKMS 310
+L+ R V G K LL H S + G G I +N D + L+
Sbjct: 3300 -RLINDRATCV-GFNK--VLLPPNH--------SKYMLWGLPDGSIRYNTGDKIKVLEDH 3347
Query: 311 KELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370
+ P T + T D G + I VY + + +
Sbjct: 3348 HDGPLTCL------------TATEDGRICVSGGSDSLICVYNLKRFSLAKR--------- 3386
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH+ +T + +S+ VS S+D TC++WD+N + Y+R + + P+S + + +T
Sbjct: 3387 LSGHTGSITCVSASRPYSIIVSGSDDRTCIIWDLNRLCYVRSLDAHE--GPISCIGIHDT 3444
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLI----TSLASELRITSVTFSNAPEGVSQNVIVT 486
GEI G+ + ++T+N +L+ TS + +IT +S PE + +NV++T
Sbjct: 3445 TGEIVVC------SGTTISVYTVNGELLINYKTSQIANDQITCCIWSKGPEWLGENVLLT 3498
Query: 487 GHSDGTIQLW 496
GH DG +++W
Sbjct: 3499 GHRDGKVKVW 3508
|
Involved in myosin-independent cytokinesis and early steps of phagocytosis. Also involved in contractile vacuole-mediated osmoregulation. Dictyostelium discoideum (taxid: 44689) |
| >sp|Q6ZS81|WDFY4_HUMAN WD repeat- and FYVE domain-containing protein 4 OS=Homo sapiens GN=WDFY4 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 248 bits (634), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 173/520 (33%), Positives = 248/520 (47%), Gaps = 87/520 (16%)
Query: 14 HYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVK 73
HY +HYS++ V +LVR+PPFT F Q +FD+ DR FH++ +TW S E+ +DV+
Sbjct: 2630 HYYTHYSSAIIVASYLVRMPPFTQAFCALQGGSFDVADRMFHSVKSTWESASRENMSDVR 2689
Query: 74 ELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESELVS 132
EL PE FYL + L N G +FG Q+G + V LPPWA DPR FI +HR++LES+ VS
Sbjct: 2690 ELTPEFFYLPEFLTNCNGVEFGCMQDGTVLGDVQLPPWADGDPRKFISLHRKALESDFVS 2749
Query: 133 ENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG--FDIAAIPDPLERTAWETMIRTYGQ 190
NL HWIDL+FGYKQ G AAVDA+N+FHP +YG D+++I DPL ++ + +GQ
Sbjct: 2750 ANLHHWIDLIFGYKQQGPAAVDAVNIFHP-YFYGDRMDLSSITDPLIKSTILGFVSNFGQ 2808
Query: 191 TPRQLFKSAHPMNVKKLTPAQESRVEVIPNIRG-----------------LVWGSYVGSP 233
P+QLF HP P V ++ G V Y+ S
Sbjct: 2809 VPKQLFTKPHPARTAAGKPLPGKDVSTPVSLPGHPQPFFYSLQSLRPSQVTVKDMYLFSL 2868
Query: 234 DEPPPC-----IVWKHK-----HRNPVSKLVPLRTNDVF--GLAKFTTLLHSYHKDKNTN 281
P IV K RN V L+P N F G F+ L SY DK
Sbjct: 2869 GSESPKGAIGHIVSTEKTILAVERNKV--LLPPLWNRTFSWGFDDFSCCLGSYGSDK--- 2923
Query: 282 LISSLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWL 341
V+ + W C L A + TT
Sbjct: 2924 ------VLMTFENLAAWGRC---------------------LCAVCPSPTTI-------- 2948
Query: 342 GLTSG-NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400
+TSG + +V +EL+ + + + L GH+ VT L FS+ VS S+D TC+
Sbjct: 2949 -VTSGTSTVVCVWELSMTKGRPRGLRLRQALYGHTQAVTCLAASVTFSLLVSGSQDCTCI 3007
Query: 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460
LWD++ + ++ +P +S +T+S+ +G I S G+ L L +N Q + S
Sbjct: 3008 LWDLDHLTHVTRLPA--HREGISAITISDVSGTIVSC------AGAHLSLWNVNGQPLAS 3059
Query: 461 LAS----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496
+ + E IT P + +I+TG DG +++W
Sbjct: 3060 ITTAWGPEGAITCCCLMEGPAWDTSQIIITGSQDGMVRVW 3099
|
Homo sapiens (taxid: 9606) |
| >sp|Q54U63|LVSC_DICDI BEACH domain-containing protein lvsC OS=Dictyostelium discoideum GN=lvsC PE=4 SV=2 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 4e-61, Method: Compositional matrix adjust.
Identities = 182/566 (32%), Positives = 277/566 (48%), Gaps = 58/566 (10%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
++YGSHYS++G VL +L+R+ PFT+ FLN Q FD PDR F ++A W S S+TDV
Sbjct: 1927 FYYGSHYSSAGIVLFYLIRLEPFTTQFLNLQGGRFDHPDRMFDSIALAWD-NSLTSSTDV 1985
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVS 132
KELIPE +Y+ + L N+ +FG++QNG ++ V+LPPWAS P FI ++R++LES+ VS
Sbjct: 1986 KELIPEFYYMPEFLTNHNHINFGIKQNGIGIEDVLLPPWASSPSDFIRINREALESDYVS 2045
Query: 133 ENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQT 191
+L WIDL+FG KQ GK A + NVF+ TY G DI +I D R A E+ I +GQT
Sbjct: 2046 SHLHEWIDLIFGIKQRGKQAKEVFNVFYYLTYEGSVDIDSIEDETTRRATESQINNFGQT 2105
Query: 192 PRQLFKSAHPMNVKKLTPAQESRVEVIPNIRGLVWGS--------YVGSPDEPPPCIVWK 243
P QLF H + L + S ++ PN + YV P EP P + +
Sbjct: 2106 PTQLFSKKHHIQRDPLNESHISILKTPPNQLQAYFLKITNKNPIVYVYIP-EPNPIMSYL 2164
Query: 244 --------HKHRNPVS-KLVPLRTNDVFGLAKFTTLLHSYHKDK------NTNLIS--SL 286
K R + K P ND F S K + N IS
Sbjct: 2165 VADKVTVIDKSRTTTNHKWFPSTPNDKISPFTFELDPSSTTKRRIGLPFANDVTISPNCF 2224
Query: 287 NVIGAGAGMICWNECDNLIRLKM--SKELPATPVIRPPLGATIATATTAPDCHTLWLGLT 344
+ G +I DN +L S +L + V T+ + A D TL G
Sbjct: 2225 AITSDGRYVISCAHWDNSFKLSFVDSAKLIQSVVKHKD---TVTCLSLASDGQTLITGSK 2281
Query: 345 SGNILVYEYELNASTNKIEFCK----PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400
++V+ A+TNK K P IL GH +T + + G +++S S+DGTC+
Sbjct: 2282 DTTVMVWRI---ATTNKSGAPKFNDVPDHILYGHDDEITCVDVNVGLDISISGSKDGTCI 2338
Query: 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460
+ ++ Y+R I + +P+S + +S G I Q ++ L++IN L+ +
Sbjct: 2339 IHNLKHGEYVRSI-YLPRQSPISLIAIS-NQGYIVIYSQ----ADLMIYLYSINGGLLKT 2392
Query: 461 LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA---HLLTLNTNVALPVIA 517
+ + R+ S+ S E ++TG G + + + + L H L T P+ +
Sbjct: 2393 VDTHERLHSIIISKDSE-----YLITGGERGVVVIRTLFNLKPTNHKLVFGT----PIHS 2443
Query: 518 VTYSCDSQHLYASNTEGLVIIWESSS 543
+ + D +HL +G ++I S+S
Sbjct: 2444 LAMASDQKHLMVGLEDGRLLIIASNS 2469
|
Dictyostelium discoideum (taxid: 44689) |
| >sp|Q7LKZ7|BPH1_SCHPO Beige protein homolog 1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=lvs1 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 231 bits (590), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 154/505 (30%), Positives = 244/505 (48%), Gaps = 46/505 (9%)
Query: 3 DAVGGVN---QEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLAT 59
D + G+N Q+P+HYG+HYS++ V +L+R+ PF +L Q FD DR F+++
Sbjct: 1996 DLLLGLNDSQQQPFHYGTHYSSAMIVCSYLIRLRPFVDSYLALQGGQFDHADRLFYSIEQ 2055
Query: 60 TWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQR-VDSVILPPWAS-DPRT 117
WR +S E+ DV+ELIPE FYL+++ +N GFDFG RQ ++ VILPPWA DP
Sbjct: 2056 AWRSSSKENMADVRELIPEFFYLSEMFINGNGFDFGSRQKESTPINDVILPPWAKGDPAI 2115
Query: 118 FIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPL 176
F+ +R++LES+ VS +L WIDLVFG KQ G AV A NVFH +Y G D+ I +
Sbjct: 2116 FVQKNREALESKYVSAHLHEWIDLVFGCKQRGDEAVAATNVFHHLSYQGAIDLENIENEF 2175
Query: 177 ERTAWETMIRTYGQTPRQLFKSAHPMNVKKLTPAQESRVEVIPNIRGLVWGSYVGSPDEP 236
E A +I +GQTP+Q+FK HP P+ G Y+ E
Sbjct: 2176 ELAAAVGIIHNFGQTPKQVFKKPHPQRG--------------PDFTDTPLGPYLFGRFED 2221
Query: 237 PPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMI 296
++++ +P+ ++ K + + KD+ + +G +
Sbjct: 2222 SIHLLFQSC--SPIIRICK----------KVAHIQYDPSKDEVGAFAADYTPLGPNT-FL 2268
Query: 297 CWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELN 356
W DN ++L +S +L PV+ L + T A D T + ++
Sbjct: 2269 AWGRVDNTVQL-ISDQLDKQPVMFEELHSEKITHVVACDERTFLTASLDLTLRLW----T 2323
Query: 357 ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV 416
STNK +L GH +T + +C FS+ VS G ++WD+N ++ +
Sbjct: 2324 LSTNKPIKASLKRVLYGHRYRITCVTVCKAFSIIVSGDAGGNLIIWDLNRAEFVSSLSVY 2383
Query: 417 DPNTPVSHVTMSETNGEIA----SVLQTTKTGGSILRLHTINAQLITSLASELRITSVTF 472
P+ + ++ N EIA G IL + +++ + E + S +
Sbjct: 2384 --KLPIQTIAVNARNAEIAFSTGFYCCVVNVNGKILVKDKL-SRIYNENSDENILCSCFY 2440
Query: 473 SNA-PEGVSQNVIVTGHSDGTIQLW 496
+ A E + +N+ +TGH DG I++W
Sbjct: 2441 TGANSEWLHKNLFITGHPDGIIRIW 2465
|
May be involved in protein sorting and cell wall formation. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| 350403013 | 3438 | PREDICTED: lysosomal-trafficking regulat | 0.973 | 0.157 | 0.527 | 1e-162 | |
| 345480622 | 3378 | PREDICTED: lysosomal-trafficking regulat | 0.976 | 0.160 | 0.511 | 1e-162 | |
| 328790033 | 3399 | PREDICTED: lysosomal-trafficking regulat | 0.973 | 0.159 | 0.522 | 1e-160 | |
| 307201173 | 3496 | Lysosomal-trafficking regulator [Harpegn | 0.974 | 0.155 | 0.517 | 1e-159 | |
| 383865882 | 3448 | PREDICTED: lysosomal-trafficking regulat | 0.974 | 0.157 | 0.511 | 1e-159 | |
| 328701859 | 3383 | PREDICTED: lysosomal-trafficking regulat | 0.973 | 0.159 | 0.495 | 1e-159 | |
| 307175931 | 3422 | Lysosomal-trafficking regulator [Campono | 0.974 | 0.158 | 0.508 | 1e-158 | |
| 332030959 | 3486 | Lysosomal-trafficking regulator [Acromyr | 0.973 | 0.155 | 0.511 | 1e-156 | |
| 322788736 | 3442 | hypothetical protein SINV_80262 [Solenop | 0.973 | 0.157 | 0.515 | 1e-153 | |
| 242014404 | 2983 | lysosomal trafficking regulator, putativ | 0.982 | 0.183 | 0.455 | 1e-143 |
| >gi|350403013|ref|XP_003486675.1| PREDICTED: lysosomal-trafficking regulator-like [Bombus impatiens] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1493), Expect = e-162, Method: Compositional matrix adjust.
Identities = 296/561 (52%), Positives = 387/561 (68%), Gaps = 20/561 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQD+NFD+PDRTFH LATTWRLTS
Sbjct: 2883 ALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDDNFDIPDRTFHALATTWRLTSC 2942
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N+EGF+FGVRQNG RV V LP W D R FI+ HR +
Sbjct: 2943 DSTTDVKELIPEFFYLPEFLLNSEGFNFGVRQNGNRVGDVELPKWCGGDARLFILAHRAA 3002
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LE++LV E LP+WIDLVFG++Q+G+ AV+AINVFHPATYYGF++ I DPLER AWETM+
Sbjct: 3003 LEADLVREVLPYWIDLVFGFRQTGRPAVEAINVFHPATYYGFNVEQIADPLERQAWETMV 3062
Query: 186 RTYGQTPRQLFKSAHPMNVKKL--TPAQESRVEVIPNIRGLVWGSYVGSP-DEPPPCIVW 242
RTYGQTP QLF AHP+ ++ L T S +VI + G+ WG+YVG+P +EP C W
Sbjct: 3063 RTYGQTPAQLFTVAHPLLIQNLANTIVHSSLPQVIEGVDGIKWGNYVGAPGNEPVLC--W 3120
Query: 243 KHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECD 302
KHKH+ P++ LVPL T DVFGL +TTLL Y K+K T+++S V +GA ++ WN D
Sbjct: 3121 KHKHKAPLASLVPLMTGDVFGLPSYTTLLLVYTKEKGTSMLSGAFV--SGAALVSWNGTD 3178
Query: 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362
++RLK KE P P+IR I +APDC LW+G SG I V+ Y + S KI
Sbjct: 3179 GIVRLKYKKEQPPRPLIRSSGLDPITILGSAPDCGQLWIGHLSGKITVHTYAVVIS--KI 3236
Query: 363 EF-CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421
+F P ++LL H + +T ++L FS+AVS G ++WD+N++ YIR I C + N P
Sbjct: 3237 DFTLTPASVLLAHRSRITTVFLSRAFSIAVSGDSSGVIVIWDLNSLTYIRSIFC-EQNYP 3295
Query: 422 VSHVTMSETNGEIASVL----QTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPE 477
+ +++SET G+IA + T T S L++ TINA+ + S+ S RIT++ +SNAPE
Sbjct: 3296 IRLLSISETLGDIAVTYEIPSENTSTSQSELKVFTINARAVGSILSRRRITALCYSNAPE 3355
Query: 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--ALPVIAVTYSCDSQHLYASNTEGL 535
GVS NVI TG +G I+LWS + L + + + VIA+ ++ D HLYA +
Sbjct: 3356 GVSVNVIATGLDNGVIRLWSSWDLRLVREIINGIKGCGAVIAIAWALDQHHLYAVTEDFT 3415
Query: 536 VIIWESSSH--NRTPKFLNLT 554
++IWE S N TPKF+NLT
Sbjct: 3416 ILIWEGSKRLSNGTPKFVNLT 3436
|
Source: Bombus impatiens Species: Bombus impatiens Genus: Bombus Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|345480622|ref|XP_001604427.2| PREDICTED: lysosomal-trafficking regulator-like [Nasonia vitripennis] | Back alignment and taxonomy information |
|---|
Score = 579 bits (1492), Expect = e-162, Method: Compositional matrix adjust.
Identities = 287/561 (51%), Positives = 392/561 (69%), Gaps = 18/561 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFLNYQD+NFD+PDRTFH LATTWRLTS
Sbjct: 2821 ALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLNYQDDNFDIPDRTFHALATTWRLTSC 2880
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N EGF+FGVRQNG RV V LP W D R FI+ HR +
Sbjct: 2881 DSTTDVKELIPEFFYLPEFLLNFEGFNFGVRQNGNRVGDVELPNWCGGDARLFILAHRAA 2940
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LESE+V E LP WIDLVFG++Q+GK AV+AINVFHPATYYGF++ I DPLER AWETM+
Sbjct: 2941 LESEIVREVLPFWIDLVFGFRQTGKPAVEAINVFHPATYYGFNVEQIADPLERQAWETMV 3000
Query: 186 RTYGQTPRQLFKSAHPMNVKKLTPAQESRV-EVIPNIRGLVWGSYVGSPDEPPPCIVWKH 244
+TYGQTP QLF+++HP+ ++ +T + + + VI + G+ WG+YVG+P P + WKH
Sbjct: 3001 KTYGQTPAQLFRASHPLPIQNMTLSTPTNIPPVIEGVEGIKWGNYVGAPGN-EPIVCWKH 3059
Query: 245 KHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDNL 304
KHR ++ L+PL T DVFGL TTL+ +Y KD+ +++SS +++ GAG+ WN D +
Sbjct: 3060 KHRVLLASLIPLVTGDVFGLPVCTTLILAYSKDRGASMLSSTSIM--GAGLASWNSTDGI 3117
Query: 305 IRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEF 364
RLK KE P P+I+ + ++PDC W+G SG I+VY ++ + KIEF
Sbjct: 3118 ARLKTKKEQPPRPLIKASGLDPVTIMKSSPDCGQFWIGYVSGRIVVYACSVSIA-GKIEF 3176
Query: 365 C-KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVS 423
P++LL H +T++ L FS+AVS +G ++WD+N++ Y+R I D + P++
Sbjct: 3177 SPASPSVLLAHRNRITNIELSRAFSIAVSGDNEGVFVIWDLNSLTYVRSIS-RDQHCPIT 3235
Query: 424 HVTMSETNGEIASVLQTTKTGG------SILRLHTINAQLITSLASELRITSVTFSNAPE 477
+ +SET G+IA V Q + + S L+++TINA+L+ S+ S +IT++ +SNA E
Sbjct: 3236 SMAISETLGDIAVVYQISSSSASDAENRSELQVYTINAKLVGSVISRSKITALCYSNAVE 3295
Query: 478 GVSQNVIVTGHSDGTIQLWSGY--KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGL 535
GVS NVI TG +G I+LWS + +L ++ ++ +IA+T+SCD HLYA+ +
Sbjct: 3296 GVSVNVIATGLDNGVIRLWSSWDLRLVREISSSSKGCGGIIAITWSCDQHHLYAATEDCT 3355
Query: 536 VIIWESSSH--NRTPKFLNLT 554
VIIWE + N TPKF+NLT
Sbjct: 3356 VIIWEGARKLSNGTPKFVNLT 3376
|
Source: Nasonia vitripennis Species: Nasonia vitripennis Genus: Nasonia Family: Pteromalidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328790033|ref|XP_392306.3| PREDICTED: lysosomal-trafficking regulator-like [Apis mellifera] | Back alignment and taxonomy information |
|---|
Score = 571 bits (1472), Expect = e-160, Method: Compositional matrix adjust.
Identities = 294/563 (52%), Positives = 385/563 (68%), Gaps = 22/563 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQD+NFD+PDRTFH LATTWRLTS
Sbjct: 2842 ALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDDNFDIPDRTFHALATTWRLTSC 2901
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N+EGF+FG+RQNG RV V LP W D R FI+ HR +
Sbjct: 2902 DSTTDVKELIPEFFYLPEFLLNSEGFNFGIRQNGNRVGDVELPKWCGGDARLFILAHRAA 2961
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LE++LV E LP+WIDLVFG++Q+G+ AV+AINVFHPATYYGF++ I DPLER AWETM+
Sbjct: 2962 LEADLVREVLPYWIDLVFGFRQTGRPAVEAINVFHPATYYGFNVEQIADPLERQAWETMV 3021
Query: 186 RTYGQTPRQLFKSAHPMNVKKL--TPAQESRVEVIPNIRGLVWGSYVGSP-DEPPPCIVW 242
RTYGQTP QLF+ AHP+ ++ L T S +VI + G+ WG+YVG+P +EP C W
Sbjct: 3022 RTYGQTPAQLFRVAHPLPIQNLGNTVVHSSLPQVIDGVDGIKWGNYVGAPGNEPVLC--W 3079
Query: 243 KHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECD 302
KHKHR P++ LVPL T DVFGL +TTLL +Y K+K TN++S +V+ A ++ WN D
Sbjct: 3080 KHKHRAPLASLVPLITGDVFGLPSYTTLLLAYTKEKGTNMLSGTSVL--AAALVSWNGTD 3137
Query: 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362
+ RLK KE P P+I+ I +APDC LW+G SG I V+ Y + S KI
Sbjct: 3138 GIARLKCKKEQPPRPLIKSSGLDPITILGSAPDCGQLWIGHLSGRITVHTYTVIIS--KI 3195
Query: 363 EF-CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421
+F P +ILL H +T + L FS+AV+ G ++WD+N++ YIR I C D N P
Sbjct: 3196 DFNSTPASILLAHRNRITTISLSRAFSIAVTGDAIGVIVIWDLNSLTYIRSIFC-DQNYP 3254
Query: 422 VSHVTMSETNGEIASVLQTTK------TGGSILRLHTINAQLITSLASELRITSVTFSNA 475
+ +++SET G+IA + K + S L++ TINA+ + S+ S+ +IT+V +SNA
Sbjct: 3255 IRLLSISETLGDIAVTYEVPKISENTSSSESELKVFTINARAVGSILSKTKITAVCYSNA 3314
Query: 476 PEGVSQNVIVTGHSDGTIQLWSGY--KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533
PEGVS NVI TG +G I+LWS + KL + +IA+ ++ D H YA +
Sbjct: 3315 PEGVSVNVIATGLDNGIIRLWSSWDLKLVREIINGMRGCGAIIAIAWALDQHHFYAVTED 3374
Query: 534 GLVIIWESSSH--NRTPKFLNLT 554
++IWE S N TPKF+NLT
Sbjct: 3375 FTILIWEGSKRLSNGTPKFVNLT 3397
|
Source: Apis mellifera Species: Apis mellifera Genus: Apis Family: Apidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307201173|gb|EFN81079.1| Lysosomal-trafficking regulator [Harpegnathos saltator] | Back alignment and taxonomy information |
|---|
Score = 568 bits (1463), Expect = e-159, Method: Compositional matrix adjust.
Identities = 291/562 (51%), Positives = 382/562 (67%), Gaps = 20/562 (3%)
Query: 8 VNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSE 67
+NQEPYHYGSHYSNSGTVLHFLVR+PPFTSMFL YQDNNFD+PDRTFH LATTWRLTS +
Sbjct: 2938 LNQEPYHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDNNFDIPDRTFHALATTWRLTSCD 2997
Query: 68 STTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQSL 126
STTDVKELIPE FYL + L+N+EGF+FGVRQNG +V V LP W DPR FI+ HR +L
Sbjct: 2998 STTDVKELIPEFFYLPEFLLNSEGFNFGVRQNGNKVGDVELPKWCGGDPRLFILGHRAAL 3057
Query: 127 ESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIR 186
ES++V E LP+WIDLVFG+KQ+G+ AV+AINVFHPATYYGF++ I DP+ R AWETM+R
Sbjct: 3058 ESDIVREVLPYWIDLVFGFKQTGRPAVEAINVFHPATYYGFNVEQIVDPVARQAWETMVR 3117
Query: 187 TYGQTPRQLFKSAHPMNVKKLTPAQESRV--EVIPNIRGLVWGSYVGSPDEPPPCIVWKH 244
TYGQTP QLF++AHP++++ L S +VI I G+ WG+YVG+P P + WKH
Sbjct: 3118 TYGQTPAQLFRAAHPLSMQNLNNVAHSSQTPQVIEGISGIKWGNYVGAPGN-EPVLCWKH 3176
Query: 245 KHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDNL 304
KHR P++ LV L T DVFGL +TTLL Y K+K +++S +V+ GA + WN D +
Sbjct: 3177 KHRFPLASLVLLTTGDVFGLPSYTTLLLGYTKEKGGSMLSCTSVL--GAALASWNGTDGI 3234
Query: 305 IRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEF 364
RLK KE P P+I+ I T ++APDC LW G SG I V+ Y + +T KIEF
Sbjct: 3235 ARLKYKKEQPPRPLIKSSGLDPITTLSSAPDCGQLWAGHLSGRITVHTYTI-GTTGKIEF 3293
Query: 365 CK-PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVS 423
++LL H + V + L FS+A S G ++WD+N++ Y+R I D +
Sbjct: 3294 SSAAASVLLAHRSRVMVISLSRAFSIACSGDSSGVMIIWDLNSLTYVRSI-VYDQGYAIH 3352
Query: 424 HVTMSETNGEIASVLQTTK-------TGGSILRLHTINAQLITSLASELRITSVTFSNAP 476
+ +SET G+IA V Q + + S LR++T+NA+ + S+ S RIT++ +SNAP
Sbjct: 3353 LLCVSETLGDIAVVYQIPEAEENGVVSNQSELRVYTVNARAVGSVLSRRRITAICYSNAP 3412
Query: 477 EGVSQNVIVTGHSDGTIQLWSGY--KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534
EGVS NVI TG +G I+LWS + +L +T N +IAV ++ D HLYA+ +
Sbjct: 3413 EGVSVNVIATGLDNGIIRLWSSWDLQLVREITHNVKGCGAIIAVAWALDQHHLYAATEDS 3472
Query: 535 LVIIWESSSH--NRTPKFLNLT 554
++IWE S + TPKF+NLT
Sbjct: 3473 TILIWEGSKRLSSGTPKFVNLT 3494
|
Source: Harpegnathos saltator Species: Harpegnathos saltator Genus: Harpegnathos Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|383865882|ref|XP_003708401.1| PREDICTED: lysosomal-trafficking regulator-like [Megachile rotundata] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1461), Expect = e-159, Method: Compositional matrix adjust.
Identities = 287/561 (51%), Positives = 378/561 (67%), Gaps = 19/561 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQEP+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQD+NFD+PDRTFH LATTWRLTS
Sbjct: 2892 ALNQEPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDDNFDIPDRTFHALATTWRLTSC 2951
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N+EGF+FG+RQNG RV V LP W D R FI+ HR +
Sbjct: 2952 DSTTDVKELIPEFFYLPEFLLNSEGFNFGIRQNGNRVGDVELPKWCGGDARLFILAHRAA 3011
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LE+++V E LP+WIDLVFG++Q+G+ AV+AINVFHPATYYGF++ I DPLER AWETM+
Sbjct: 3012 LEADVVREVLPYWIDLVFGFRQTGRPAVEAINVFHPATYYGFNVEQIADPLERQAWETMV 3071
Query: 186 RTYGQTPRQLFKSAHPMNVKKL--TPAQESRVEVIPNIRGLVWGSYVGSPDEPPPCIVWK 243
RTYGQTP QLF++AHP+ ++ L T +VI + G+ WG+YVG+P P + WK
Sbjct: 3072 RTYGQTPAQLFRAAHPLPIQNLGSTIIHNPLPQVIEGVNGIKWGNYVGAPGN-EPVLCWK 3130
Query: 244 HKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDN 303
HKHR P++ L+PL T DVFGL +TTLL Y K+K +++S +V+ A ++ W D
Sbjct: 3131 HKHRAPLASLIPLMTGDVFGLPSYTTLLLGYTKEKGASMLSGTSVL--AAALVSWGGTDG 3188
Query: 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE 363
+ RLK KE P P+I+ I ++APDC LW G SG I V+ Y T+KI+
Sbjct: 3189 ITRLKCKKEQPPRPLIKSSGLDPITILSSAPDCGQLWAGHLSGRITVHTY--TVVTSKID 3246
Query: 364 F-CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV 422
F ++LL H +T + L FS+AVS G ++WD+N++ YIR I C D N P+
Sbjct: 3247 FNSASASVLLAHRNRITTISLSRAFSIAVSGDASGVIVIWDLNSLMYIRSISC-DQNYPI 3305
Query: 423 SHVTMSETNGEIASVLQTTKT-----GGSILRLHTINAQLITSLASELRITSVTFSNAPE 477
+++SET G+IA T S L++ TINA+ + S+ S RIT++ +SNAPE
Sbjct: 3306 RLLSISETLGDIAVTYDIVGTRENASSQSELKIFTINARAVGSVLSRRRITALCYSNAPE 3365
Query: 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--ALPVIAVTYSCDSQHLYASNTEGL 535
GVS NVI TG +G I+LWS + L + + + VIA+ ++ D HLYA +
Sbjct: 3366 GVSVNVIATGLDNGVIRLWSSWDLRLVREIMNGIKGCGAVIAIAWALDQHHLYAVTEDFT 3425
Query: 536 VIIWESSSH--NRTPKFLNLT 554
V+IWE S N TPKF+NLT
Sbjct: 3426 VLIWEGSKRLSNGTPKFVNLT 3446
|
Source: Megachile rotundata Species: Megachile rotundata Genus: Megachile Family: Megachilidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|328701859|ref|XP_001949243.2| PREDICTED: lysosomal-trafficking regulator-like [Acyrthosiphon pisum] | Back alignment and taxonomy information |
|---|
Score = 567 bits (1460), Expect = e-159, Method: Compositional matrix adjust.
Identities = 275/555 (49%), Positives = 384/555 (69%), Gaps = 14/555 (2%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+P+HY SHYSNSGT+LHFL+R+PP+T MF+ YQDNNFD+PDR+FH++ TWRL+S ESTT
Sbjct: 2832 DPHHYSSHYSNSGTILHFLIRVPPYTQMFIKYQDNNFDVPDRSFHSMEITWRLSSDESTT 2891
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
D+KELIPE +YL ++ +N E +FGV+Q+G+ VDSV LP WA ++PR F+++ RQ LESE
Sbjct: 2892 DLKELIPEFYYLPEMFMNFEQLNFGVKQSGEIVDSVKLPTWAQNNPRLFVLIQRQLLESE 2951
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
+VSENLPHWIDL+FGYKQ+GKAA+DAINVFHPATYYG I DP+ R+A++TMI TYG
Sbjct: 2952 IVSENLPHWIDLIFGYKQTGKAAIDAINVFHPATYYGSHIEETEDPVARSAFKTMISTYG 3011
Query: 190 QTPRQLFKSAHPMNVKKLTPAQESR----VEVIPNIRGLVWGSYVGSPDEPPPCIVWKHK 245
QTPRQLF+ HPM V +P ++ VI ++ L WG+YVGSP+E P +WK K
Sbjct: 3012 QTPRQLFRFPHPMTVDDYSPKNVTKNTNCRNVIAGLKNLKWGNYVGSPEENVPMYIWKRK 3071
Query: 246 HRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDNLI 305
H+ V+ VPL TNDVFGL+ + LL +Y K+K+ L++ V A ++ W+E D+++
Sbjct: 3072 HKTLVTNFVPLLTNDVFGLSNNSALLLTYSKEKSLTLLNE-GVTVMAAAILTWSEFDSVV 3130
Query: 306 RLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFC 365
R+K KE P+ P + I+T TAP C +W+G SG I VY++ + +E
Sbjct: 3131 RIKQRKEAPSKPAFKFFSTDNISTIVTAPHCPYVWIGFESGIIHVYKFYFDIIVGNVEIF 3190
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT-PVSH 424
K PT+L+GH A ++ + L FS+AVS +GT ++WD+N I Y+R + +P T P++
Sbjct: 3191 KEPTVLVGHRAKISCIALSPAFSIAVSCDNEGTAIIWDLNDITYVRSL---EPMTSPINL 3247
Query: 425 VTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVI 484
V+++E G+I + +G SI+ L TINA I S+ S+ +IT+V FSNAPEG+S N+I
Sbjct: 3248 VSINEILGDIVTTAYNYDSGKSIMTLQTINASYIGSIESDKKITAVCFSNAPEGISVNII 3307
Query: 485 VTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
TG DG+++LWS + L+ + + + VIA+ YS DSQHLY S +G V IWES+
Sbjct: 3308 ATGLEDGSVKLWSTWDLSFVNEIPIIHFDGAVIAIIYSSDSQHLYISTEDGTVTIWESAG 3367
Query: 544 HNR---TPKFLNLTL 555
R TPKFLNL++
Sbjct: 3368 AKRISKTPKFLNLSM 3382
|
Source: Acyrthosiphon pisum Species: Acyrthosiphon pisum Genus: Acyrthosiphon Family: Aphididae Order: Hemiptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|307175931|gb|EFN65741.1| Lysosomal-trafficking regulator [Camponotus floridanus] | Back alignment and taxonomy information |
|---|
Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust.
Identities = 286/562 (50%), Positives = 385/562 (68%), Gaps = 20/562 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQDNNFD+PDRTFH LATTWRLTS
Sbjct: 2865 ALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDNNFDIPDRTFHALATTWRLTSC 2924
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N EGF+FGVRQNG +V V LP W D R FI+ HR +
Sbjct: 2925 DSTTDVKELIPEFFYLPEFLLNFEGFNFGVRQNGNKVGDVELPKWCGGDVRLFILAHRAA 2984
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LES++V E LP+WIDLVFG++Q+GK AV+AINVFHPATYYGFD+ I D LER AWETMI
Sbjct: 2985 LESDIVREVLPYWIDLVFGFRQTGKPAVEAINVFHPATYYGFDVEQISDSLERQAWETMI 3044
Query: 186 RTYGQTPRQLFKSAHPM--NVKKLTPAQESRVEVIPNIRGLVWGSYVGSPDEPPPCIVWK 243
RTYGQTP QLF++ HP+ N+ +T + ++ ++VI + G+ WG+YVG+P P + WK
Sbjct: 3045 RTYGQTPAQLFRTPHPLIQNLGNVTLSDQT-LQVIEGVSGIKWGNYVGAPGN-KPVLCWK 3102
Query: 244 HKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECDN 303
KH+ P++ L+PL T DVFGL +TTLL Y K+K +++S+++V+ GA + WN D
Sbjct: 3103 LKHKTPLASLIPLATGDVFGLPNYTTLLLGYTKEKGGSMLSNMSVL--GAALASWNGTDG 3160
Query: 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE 363
+ RLK KE P P+I+ I T + PDC LW+G SG I + Y + T KIE
Sbjct: 3161 IARLKCKKEQPPKPLIKSSGLDPITTLGSTPDCGQLWIGHLSGRITAHTYIIGI-TGKIE 3219
Query: 364 FCKPPTI-LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV 422
F P I LL H + VT + L FS+A S +G +WD+N++ Y+R I C D +
Sbjct: 3220 FSLAPAITLLAHRSRVTTISLSRAFSIACSGDANGVIAIWDLNSLTYVRSIVC-DQGYTI 3278
Query: 423 SHVTMSETNGEIASVLQTTKTGGSI------LRLHTINAQLITSLASELRITSVTFSNAP 476
+ +SET G++A + ++ ++ LR++TINA+ + S++S+ R+T++ +S+AP
Sbjct: 3279 HLLCISETLGDVAITYEIPRSEDNVTADRSELRVYTINARAVGSISSKRRVTALCYSSAP 3338
Query: 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--ALPVIAVTYSCDSQHLYASNTEG 534
EGVS NVI TG +G I+LWS + L + ++ N+ + +IAV +S D HLYA +
Sbjct: 3339 EGVSVNVIATGLDNGIIRLWSSWDLQLVREISNNLRDSCAIIAVVWSLDQHHLYAVTEDS 3398
Query: 535 LVIIWESSSH--NRTPKFLNLT 554
V+IWE S N TPKF+NLT
Sbjct: 3399 TVLIWEGSKRLSNGTPKFVNLT 3420
|
Source: Camponotus floridanus Species: Camponotus floridanus Genus: Camponotus Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|332030959|gb|EGI70585.1| Lysosomal-trafficking regulator [Acromyrmex echinatior] | Back alignment and taxonomy information |
|---|
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 288/563 (51%), Positives = 381/563 (67%), Gaps = 22/563 (3%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQDNNFD+PDRTFH LATTWRLTS
Sbjct: 2929 ALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDNNFDIPDRTFHALATTWRLTSC 2988
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPW-ASDPRTFIMVHRQS 125
+STTDVKELIPE FYL + L+N EGF+FGVRQNG +V V LP W D R FI+ HR +
Sbjct: 2989 DSTTDVKELIPEFFYLPEFLLNFEGFNFGVRQNGSKVGDVELPKWCGGDARLFILAHRAA 3048
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LES++V E LP+WIDLVFG++Q+G+ A++AINVFHPATYYGFD+ I DPLER AWETM+
Sbjct: 3049 LESDIVREVLPYWIDLVFGFRQTGRPAIEAINVFHPATYYGFDVEQITDPLERQAWETMV 3108
Query: 186 RTYGQTPRQLFKSAHPM--NVKKLTPAQESRVEVIPNIRGLVWGSYVGSP-DEPPPCIVW 242
RTYGQTP QLF+++HPM N+ +T + + +VI I G+ WG+YVG+P +EP C W
Sbjct: 3109 RTYGQTPAQLFRASHPMIQNLGNITLSNQI-PQVIEGISGIKWGNYVGAPGNEPILC--W 3165
Query: 243 KHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECD 302
K KH+ P++ LVPL T DVFGL +TTLL Y K+K ++++S ++V+ G + W+ D
Sbjct: 3166 KLKHKTPLASLVPLATGDVFGLPNYTTLLLGYTKEKGSSMLSGMSVL--GVALASWSSTD 3223
Query: 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362
+ RLK KE P P+I+ I T + PDC LW+G SG I V+ Y + + KI
Sbjct: 3224 GIARLKCKKEQPPRPLIKSSGLDPITTLASTPDCGQLWIGHLSGRITVHAYTI-GTAGKI 3282
Query: 363 EFCK-PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421
EF T+LL H+ VT + L FS+A S ++WD+N++ YIR I C D
Sbjct: 3283 EFSSTSATVLLAHNNRVTVISLSRTFSIACSGDGSSVIIIWDLNSLTYIRSIVC-DQGYA 3341
Query: 422 VSHVTMSETNGEIASVLQTTKT------GGSILRLHTINAQLITSLASELRITSVTFSNA 475
+ + +SET G++A+ ++ S L +HTINA+ + S+ S +T++ +SNA
Sbjct: 3342 IHLLCISETLGDVAATYDIPRSEDNATNNQSELTVHTINARAVGSILSRRGVTALCYSNA 3401
Query: 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--ALPVIAVTYSCDSQHLYASNTE 533
PEG+S NVI TG +G I+LWS + L + ++TNV +IAV +S D HLYA +
Sbjct: 3402 PEGISVNVIATGLDNGIIRLWSSWDLQLVREISTNVRDCGAIIAVAWSLDQHHLYAVTED 3461
Query: 534 GLVIIWESSSH--NRTPKFLNLT 554
V+IWE S N TPKF+NLT
Sbjct: 3462 FTVLIWEGSKRLSNGTPKFVNLT 3484
|
Source: Acromyrmex echinatior Species: Acromyrmex echinatior Genus: Acromyrmex Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|322788736|gb|EFZ14329.1| hypothetical protein SINV_80262 [Solenopsis invicta] | Back alignment and taxonomy information |
|---|
Score = 547 bits (1410), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/565 (51%), Positives = 382/565 (67%), Gaps = 24/565 (4%)
Query: 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSS 66
+NQ P+HYGSHYSNSGTVLHFLVR+PPFTSMFL YQDNNFD+PDRTFH LATTWRLTS
Sbjct: 2883 ALNQGPFHYGSHYSNSGTVLHFLVRLPPFTSMFLCYQDNNFDIPDRTFHALATTWRLTSC 2942
Query: 67 ESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQS 125
+STTDVKELIPE FYL++ L+N EGF+FGVRQNG RV V LP W S D R FI+ HR +
Sbjct: 2943 DSTTDVKELIPEFFYLSEFLLNFEGFNFGVRQNGNRVGDVELPKWCSGDARLFILAHRAA 3002
Query: 126 LESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMI 185
LES++V E LP+WIDLVFG++Q+GK A++AINVFHPATYYGFD+ I DPLER AWETM+
Sbjct: 3003 LESDIVREVLPYWIDLVFGFRQTGKPAIEAINVFHPATYYGFDVEKITDPLERQAWETMV 3062
Query: 186 RTYGQTPRQLFKSAHPM--NVKKLTPAQESRVEVIPNIRGLVWGSYVGSP-DEPPPCIVW 242
RTYGQTP QLF++ HP+ N+ +T + ++ +VI I G+ WG+YVG+P +EP C W
Sbjct: 3063 RTYGQTPAQLFRAPHPLIQNLGNITLSNQT-PQVIEGINGIKWGNYVGAPGNEPVLC--W 3119
Query: 243 KHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECD 302
K KH+ ++ LVPL T DVFGL +TTLL Y K+K ++++S ++V+ G + WN D
Sbjct: 3120 KLKHKTLLASLVPLATGDVFGLPNYTTLLLGYTKEKGSSMLSGMSVL--GVALASWNGTD 3177
Query: 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362
+ RLK KE P P+I+ I T + PDC LW+G SG I V+ Y + +T KI
Sbjct: 3178 GIARLKCKKEQPPRPLIKSSGLDPITTLASTPDCGQLWIGHLSGRITVHAYTI-GTTGKI 3236
Query: 363 EFCKP-PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421
EF T+LL H + VT + L FSVA S +G ++WD+N++ Y+R I D
Sbjct: 3237 EFSSASATVLLAHRSQVTVISLSRIFSVACSGDGNGIIVIWDLNSLTYVRSI-VRDQGYA 3295
Query: 422 VSHVTMSETNGEIASVLQTTKT------GGSILRLHTINAQLITSLASELRITSVTFSNA 475
+ + +SET G+IA+ ++ S L +HTINA+ + S+ S RIT++ +SNA
Sbjct: 3296 IRLLCISETLGDIAATYDIPRSEDNATNNQSELTVHTINARHVGSILSRRRITALCYSNA 3355
Query: 476 PEGVSQNVIVTGHSDGTIQ--LWSGYKLAHLLTLNTNV--ALPVIAVTYSCDSQHLYASN 531
PEGVS NVI G +G I+ ++ L + ++ NV +IAV +S D HLYA
Sbjct: 3356 PEGVSVNVIAIGLDNGIIRHDTYTIILLNIVREISNNVRGCGAIIAVAWSLDQHHLYAVT 3415
Query: 532 TEGLVIIWESSSH--NRTPKFLNLT 554
+ V+IWE S H N TPKF+NLT
Sbjct: 3416 EDSTVLIWEGSKHLSNGTPKFVNLT 3440
|
Source: Solenopsis invicta Species: Solenopsis invicta Genus: Solenopsis Family: Formicidae Order: Hymenoptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
| >gi|242014404|ref|XP_002427881.1| lysosomal trafficking regulator, putative [Pediculus humanus corporis] gi|212512350|gb|EEB15143.1| lysosomal trafficking regulator, putative [Pediculus humanus corporis] | Back alignment and taxonomy information |
|---|
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 264/579 (45%), Positives = 367/579 (63%), Gaps = 33/579 (5%)
Query: 3 DAVGGV-----NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNL 57
+ +GGV N+EPYHYGSHYSNSGTVLHFLVR+PPFT M L+YQD NFDLPDRTFH+L
Sbjct: 2412 ELLGGVKQATLNKEPYHYGSHYSNSGTVLHFLVRLPPFTKMLLHYQDRNFDLPDRTFHSL 2471
Query: 58 ATTWRLTSSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPR 116
TTWRL SSESTTDVKEL PE F+L + L+N++GF+FG+RQNG+ V++V LPPW DPR
Sbjct: 2472 HTTWRLASSESTTDVKELTPEFFFLPEFLINSQGFNFGIRQNGEVVNNVFLPPWCKGDPR 2531
Query: 117 TFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPL 176
FI++HRQ+LES V+ENLP WIDLVFG+KQ+GKAAVDAINVFHPATY GFD+ AI DP+
Sbjct: 2532 KFILIHRQALESNYVTENLPRWIDLVFGFKQTGKAAVDAINVFHPATYSGFDLEAITDPV 2591
Query: 177 ERTAWETMIRTYGQTPRQLFKSAHPMNVKKLTPAQESRVEVIPN-------------IRG 223
ER AWETM++TYGQTP+QLFK+ HPM ++ L + +P+ ++G
Sbjct: 2592 ERIAWETMVKTYGQTPKQLFKTPHPMPIRSLQNSDSISHLSLPHLTNAYSYGYNYKEVKG 2651
Query: 224 LVWGSYVGSPDEPPPCIVWKH--KHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTN 281
L WG + GSP+E P I+++ + +S L PL TND+ G+ TT L K+K
Sbjct: 2652 LKWGYFPGSPNESEPVILFRQPSNTKEIISYLAPLPTNDIIGIPDNTTCLLHLSKNK--- 2708
Query: 282 LISSLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWL 341
N G +I W D +IR+K+ E P P+ L + + C+ LW+
Sbjct: 2709 --EGWNFNGCRIALISWGYSDGIIRIKLKNESPMLPLYTISLLDPVTICASELGCNNLWM 2766
Query: 342 GLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401
G +SGNI VY+++ + + ++F P L GH VT + + +S+ +S DG ++
Sbjct: 2767 GHSSGNITVYKFKFASDQDHVKFDDLPIALQGHKKSVTHIAISRAYSLVATSGLDGIIII 2826
Query: 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG-GSILRLHTINAQLITS 460
WD+N I Y+R I V+ +S T G+IA+V+++ K ++L L T+N + S
Sbjct: 2827 WDLNQISYVRSIDL--SQGIVNMAVISNTLGDIAAVVESNKNSHANMLYLFTVNGNFVNS 2884
Query: 461 LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVT 519
+ I+ V FS++PEG S NVI G +G I+++S + L L + ++ P+ VT
Sbjct: 2885 TTVKESISCVCFSSSPEGTSINVIACGLKNGVIRIFSTWDLTKLCDIFIPSMTQPITCVT 2944
Query: 520 YSCDSQHLYASNTEGLVIIWESSSHN---RTPKFLNLTL 555
YS DSQ L AS +G V++W+S+++ + K LNL L
Sbjct: 2945 YSYDSQFLIASFNDGSVVLWQSTNNKSKLKISKLLNLKL 2983
|
Source: Pediculus humanus corporis Species: Pediculus humanus Genus: Pediculus Family: Pediculidae Order: Phthiraptera Class: Insecta Phylum: Arthropoda Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 556 | ||||||
| MGI|MGI:107448 | 3788 | Lyst "lysosomal trafficking re | 0.438 | 0.064 | 0.607 | 4.4e-128 | |
| UNIPROTKB|Q99698 | 3801 | LYST "Lysosomal-trafficking re | 0.341 | 0.049 | 0.738 | 1.3e-126 | |
| UNIPROTKB|F1RGY4 | 3799 | F1RGY4 "Uncharacterized protei | 0.341 | 0.050 | 0.743 | 2.8e-126 | |
| UNIPROTKB|F1MLZ4 | 3796 | LYST "Lysosomal-trafficking re | 0.341 | 0.050 | 0.743 | 3.5e-126 | |
| UNIPROTKB|Q9TTK4 | 3796 | LYST "Lysosomal-trafficking re | 0.341 | 0.050 | 0.743 | 3.5e-126 | |
| RGD|621837 | 3788 | Lyst "lysosomal trafficking re | 0.341 | 0.050 | 0.743 | 5.7e-126 | |
| UNIPROTKB|F1NP17 | 2709 | F1NP17 "Uncharacterized protei | 0.568 | 0.116 | 0.351 | 5.8e-93 | |
| FB|FBgn0262110 | 2517 | CG42863 [Drosophila melanogast | 0.593 | 0.131 | 0.484 | 7.7e-93 | |
| DICTYBASE|DDB_G0271504 | 4118 | lvsB "BEACH domain-containing | 0.348 | 0.047 | 0.602 | 9.7e-77 | |
| ZFIN|ZDB-GENE-070705-153 | 3522 | si:ch211-259k10.1 "si:ch211-25 | 0.339 | 0.053 | 0.534 | 1.2e-67 |
| MGI|MGI:107448 Lyst "lysosomal trafficking regulator" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 794 (284.6 bits), Expect = 4.4e-128, Sum P(2) = 4.4e-128
Identities = 155/255 (60%), Positives = 190/255 (74%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3216 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3275
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3276 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3335
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ HWIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3336 HVSQNICHWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3395
Query: 190 QTPRQLFKSAHPMNVKKLTPAQESRVE-VIPNIRGLVWGSYVGSPDEPPPCIVWKHKHRN 248
QTPRQLF +AH P + +E +P GL+ EP V + H +
Sbjct: 3396 QTPRQLFHTAHASR-----PGAKLNIEGELPAAVGLLVQFAFRETREP----VKEVTHPS 3446
Query: 249 PVSKLVPLRTNDVFG 263
P+S + L+ + G
Sbjct: 3447 PLSWIKGLKWGEYVG 3461
|
|
| UNIPROTKB|Q99698 LYST "Lysosomal-trafficking regulator" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 785 (281.4 bits), Expect = 1.3e-126, Sum P(2) = 1.3e-126
Identities = 141/191 (73%), Positives = 165/191 (86%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3229 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3288
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3289 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3348
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3349 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3408
Query: 190 QTPRQLFKSAH 200
QTPRQLF AH
Sbjct: 3409 QTPRQLFHMAH 3419
|
|
| UNIPROTKB|F1RGY4 F1RGY4 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 2.8e-126, Sum P(2) = 2.8e-126
Identities = 142/191 (74%), Positives = 167/191 (87%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3227 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3286
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3287 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3346
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3347 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3406
Query: 190 QTPRQLFKSAH 200
QTPRQLF+SAH
Sbjct: 3407 QTPRQLFQSAH 3417
|
|
| UNIPROTKB|F1MLZ4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 3.5e-126, Sum P(2) = 3.5e-126
Identities = 142/191 (74%), Positives = 167/191 (87%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3224 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3283
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3284 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3343
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3344 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3403
Query: 190 QTPRQLFKSAH 200
QTPRQLF+SAH
Sbjct: 3404 QTPRQLFQSAH 3414
|
|
| UNIPROTKB|Q9TTK4 LYST "Lysosomal-trafficking regulator" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 792 (283.9 bits), Expect = 3.5e-126, Sum P(2) = 3.5e-126
Identities = 142/191 (74%), Positives = 167/191 (87%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3224 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3283
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3284 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3343
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ WIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3344 YVSQNICQWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3403
Query: 190 QTPRQLFKSAH 200
QTPRQLF+SAH
Sbjct: 3404 QTPRQLFQSAH 3414
|
|
| RGD|621837 Lyst "lysosomal trafficking regulator" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 5.7e-126, Sum P(2) = 5.7e-126
Identities = 142/191 (74%), Positives = 167/191 (87%)
Query: 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTT 70
+PYHYGSHYSNSGTVLHFLVR+PPFT MFL YQD +FD+PDRTFH+ TTWRL+S ES T
Sbjct: 3216 QPYHYGSHYSNSGTVLHFLVRMPPFTKMFLAYQDQSFDIPDRTFHSTNTTWRLSSFESMT 3275
Query: 71 DVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLESE 129
DVKELIPE FYL + LVN EGFDFGVRQNG+RV+ V LPPWA +DPR FI++HRQ+LES+
Sbjct: 3276 DVKELIPEFFYLPEFLVNREGFDFGVRQNGERVNHVNLPPWARNDPRLFILIHRQALESD 3335
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+N+ HWIDLVFGYKQ GKA+V AINVFHPATY+G D++A+ DP++R A ETMI+TYG
Sbjct: 3336 HVSQNICHWIDLVFGYKQKGKASVQAINVFHPATYFGMDVSAVEDPVQRRALETMIKTYG 3395
Query: 190 QTPRQLFKSAH 200
QTPRQLF +AH
Sbjct: 3396 QTPRQLFHTAH 3406
|
|
| UNIPROTKB|F1NP17 F1NP17 "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
|---|
Score = 530 (191.6 bits), Expect = 5.8e-93, Sum P(3) = 5.8e-93
Identities = 114/324 (35%), Positives = 180/324 (55%)
Query: 218 IPNIRGLVWGSYVGSPDEPPPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKD 277
+P I+GL WG YVGSP P P + + H L L T + GL++ LL Y K+
Sbjct: 2369 LPWIKGLKWGEYVGSPSAPDPVVCFSQPHGERFGSLQALPTKAICGLSRKFCLLMIYSKE 2428
Query: 278 KNTNLISSLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH 337
+ + S ++ + ++ W DN++RLK + P I+ + + PD
Sbjct: 2429 QGVRSMHSTDI--QWSAILSWGYADNILRLKSKQSEPPVNFIQSSQFHQVTSCAWVPDSC 2486
Query: 338 TLWLGLTSGNILVYEYELNAST-NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED 396
L+ G SG I Y +ST ++IE + L GH+A +T L++C +S+ +S S+D
Sbjct: 2487 QLFTGSKSGVITAYMNRFTSSTPSEIEM-ESQVHLYGHTAEITSLFVCKPYSIMISVSKD 2545
Query: 397 GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456
GTC++WD+N + Y++ + +PV+ V+ SET G+IA+V + GGS LRL T+N
Sbjct: 2546 GTCIIWDLNRLCYVQSL--AGHKSPVTAVSASETTGDIATVCDSVG-GGSDLRLWTVNGD 2602
Query: 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPV 515
L+ + I SV FSN PEGVS NVI G +G ++LWS + L + + + A P+
Sbjct: 2603 LVGHVHCRESICSVAFSNQPEGVSVNVIAGGLENGVVRLWSTWDLKPVREITFSKSAKPI 2662
Query: 516 IAVTYSCDSQHLYASNTEGLVIIW 539
+++T+SCD HL+ +N++G VI W
Sbjct: 2663 VSLTFSCDGHHLFTANSDGNVIAW 2686
|
|
| FB|FBgn0262110 CG42863 [Drosophila melanogaster (taxid:7227)] | Back alignment and assigned GO terms |
|---|
Score = 793 (284.2 bits), Expect = 7.7e-93, Sum P(2) = 7.7e-93
Identities = 171/353 (48%), Positives = 222/353 (62%)
Query: 5 VGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLT 64
+G + +PYHY SHYSNSGTVLHFLVR+PPFTS FL YQDN+FDLPDRTFH L TTW L
Sbjct: 1864 MGSLILKPYHYSSHYSNSGTVLHFLVRVPPFTSYFLRYQDNDFDLPDRTFHALNTTWLLA 1923
Query: 65 SSESTTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHR 123
S +S TDVKELIPE F L ++ N E F FG RQNG+RV+ V LPPW+ D R F+++HR
Sbjct: 1924 SRDSPTDVKELIPEFFCLPEMFENFERFKFGCRQNGERVEDVSLPPWSQRDSRLFVLIHR 1983
Query: 124 QSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWET 183
Q+LESELV + +WIDL+FGYKQSG++AV+AINVFHPATY F + I DP+ER A +T
Sbjct: 1984 QALESELVRNQIHNWIDLIFGYKQSGESAVEAINVFHPATYAVFLDSEISDPIEREAVKT 2043
Query: 184 MIRTYGQTPRQLFKSAHPMNVKKLTPAQESRVEVIPNIRGLVWGSYVGSPDEPPPCIVWK 243
M++TYGQ PRQLFKS HP + K L + + ++ +RGL WG YVGSP P W
Sbjct: 2044 MVKTYGQMPRQLFKSPHPAS-KPLDYSLVGK-PIVSTVRGLRWGVYVGSPQLKAPS--WA 2099
Query: 244 HKHRNPVSK-LVPL-RTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNEC 301
+ H+ P ++ LV TN V+ L +++ D + NVI W
Sbjct: 2100 NIHKIPGTEHLVSFCNTNVVYALPGRASVMQGAEPD-------TYNVIS-------WGYD 2145
Query: 302 DNLIRLKMSKELPATP--VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYE 352
D ++R++ + A P ++ I + + LW G SG I VY+
Sbjct: 2146 DRIVRIQPLNKPQAKPKNLLHNGTFDDITACGCDVNSNQLWFGHKSGRISVYK 2198
|
|
| DICTYBASE|DDB_G0271504 lvsB "BEACH domain-containing protein" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
|---|
Score = 638 (229.6 bits), Expect = 9.7e-77, Sum P(2) = 9.7e-77
Identities = 118/196 (60%), Positives = 148/196 (75%)
Query: 8 VNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSE 67
+N++PYHYGSHYSN G+VLHFLVR+ PFTS F+++Q FD+PDR FH++A +W L+SS
Sbjct: 3585 MNEKPYHYGSHYSNIGSVLHFLVRLQPFTSYFIDFQGGRFDVPDRAFHSIAQSWNLSSSI 3644
Query: 68 STTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSL 126
S +DVKELIPE FYL+D LVN+ F G++QNG +VD VILPPWA +DPR FI H ++L
Sbjct: 3645 SNSDVKELIPEFFYLSDFLVNSNKFFMGIKQNGVKVDDVILPPWAHNDPRLFIKKHNEAL 3704
Query: 127 ESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMI 185
E + VSENL HWIDL+FGYKQ G+AAV A N+F P TY G DI +I D L R A I
Sbjct: 3705 ECKYVSENLHHWIDLLFGYKQQGEAAVKAHNMFFPLTYEGAVDIDSIEDQLNRDAAVAQI 3764
Query: 186 RTYGQTPRQLFKSAHP 201
+YGQTP+Q+F HP
Sbjct: 3765 HSYGQTPKQIFTKPHP 3780
|
|
| ZFIN|ZDB-GENE-070705-153 si:ch211-259k10.1 "si:ch211-259k10.1" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Score = 536 (193.7 bits), Expect = 1.2e-67, Sum P(3) = 1.2e-67
Identities = 102/191 (53%), Positives = 128/191 (67%)
Query: 13 YHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDV 72
YHYG+HYS++ V +LVR+ PFT +FL Q +FDL DR FH++ W S + DV
Sbjct: 2769 YHYGTHYSSAMIVASYLVRMEPFTQIFLRLQGGHFDLADRMFHSVREAWLSASKHNMADV 2828
Query: 73 KELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQSLESELV 131
KELIPE FYL + L+N+ FD G +QNG ++ VILPPWA DPR FI VHR++LE + V
Sbjct: 2829 KELIPEFFYLPEFLLNSNNFDLGSKQNGTKLGDVILPPWAKGDPREFIRVHREALECDYV 2888
Query: 132 SENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIRTYGQ 190
S +L WIDL+FGYKQ G AV+A+NVFH Y G DI I DPL+ TA I +GQ
Sbjct: 2889 SAHLHEWIDLIFGYKQQGPPAVEAVNVFHHLFYEGQVDIYNINDPLKETATIGFINNFGQ 2948
Query: 191 TPRQLFKSAHP 201
P+QLFK HP
Sbjct: 2949 IPKQLFKKPHP 2959
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 556 | |||
| smart01026 | 280 | smart01026, Beach, Beige/BEACH domain | 1e-112 | |
| pfam02138 | 274 | pfam02138, Beach, Beige/BEACH domain | 1e-95 | |
| cd06071 | 275 | cd06071, Beach, BEACH (Beige and Chediak-Higashi) | 1e-89 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 1e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 5e-08 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-07 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 4e-06 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 2e-05 |
| >gnl|CDD|214982 smart01026, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 334 bits (859), Expect = e-112
Identities = 116/195 (59%), Positives = 144/195 (73%), Gaps = 2/195 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
+ P+HYG+HYS++G VL++L+R+ PFT++FL Q FD DR FH++A TWR S ES
Sbjct: 84 DIPPFHYGTHYSSAGIVLYYLIRLEPFTTLFLQLQGGRFDHADRLFHSVAATWRSASLES 143
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWA-SDPRTFIMVHRQSLE 127
TDVKELIPE FYL + LVN GFDFG RQ+G+ VD V LPPWA P FI HR++LE
Sbjct: 144 MTDVKELIPEFFYLPEFLVNINGFDFGTRQDGEDVDDVELPPWAKGSPEEFIRKHREALE 203
Query: 128 SELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG-FDIAAIPDPLERTAWETMIR 186
SE VS++L HWIDL+FGYKQ GK AV+A+NVFHP TY G D+ +I DP+ER A E I
Sbjct: 204 SEYVSQHLHHWIDLIFGYKQRGKEAVEALNVFHPLTYEGAVDLDSIEDPVERKALEGQIH 263
Query: 187 TYGQTPRQLFKSAHP 201
+GQTP+QLFK HP
Sbjct: 264 NFGQTPKQLFKEPHP 278
|
The BEACH domain was described in the BEIGE protein (D1035670) and in the highly homologous CHS protein. The BEACH domain is usually followed by a series of WD repeats. The function of the BEACH domain is unknown. Length = 280 |
| >gnl|CDD|216896 pfam02138, Beach, Beige/BEACH domain | Back alignment and domain information |
|---|
Score = 292 bits (749), Expect = 1e-95
Identities = 100/193 (51%), Positives = 130/193 (67%), Gaps = 3/193 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
P+HYGSHYS+ G+VLH+L+R+ PFT++ + Q FD DR F ++ W+ SES
Sbjct: 83 VGPPFHYGSHYSSPGSVLHYLIRLEPFTTLHIELQGGKFDHADRLFSSIEEAWKS-VSES 141
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLES 128
DVKELIPE FYL + L N FD G R +G++VD V LPPWA P F+ +R++LES
Sbjct: 142 MNDVKELIPEFFYLPEFLKNINNFDLGKR-DGEKVDDVELPPWAKSPEEFVYKNRKALES 200
Query: 129 ELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTY 188
+ VSENL +WIDL+FGYKQ G+ A++A NVFHP TY + I DP+ER A E I +
Sbjct: 201 DYVSENLHNWIDLIFGYKQRGEEAIEAKNVFHPLTYEDI-VDKIKDPVEREAIEAQISNF 259
Query: 189 GQTPRQLFKSAHP 201
GQTP+QLF HP
Sbjct: 260 GQTPKQLFTEPHP 272
|
Length = 274 |
| >gnl|CDD|100117 cd06071, Beach, BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Score = 276 bits (709), Expect = 1e-89
Identities = 102/192 (53%), Positives = 133/192 (69%), Gaps = 3/192 (1%)
Query: 10 QEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSEST 69
P+HYGSHYSN VL++LVR+ PFT++ L+ Q +FD DR F+++ ++WR ++SE+
Sbjct: 85 DPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWR-SASENP 143
Query: 70 TDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESE 129
+DVKELIPE +YL + +N FDFG Q+G++V+ V LPPWA P FI HR++LESE
Sbjct: 144 SDVKELIPEFYYLPEFFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESE 202
Query: 130 LVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIAAIPDPLERTAWETMIRTYG 189
VS+NL HWIDL+FGYKQ G+ AV A NVFHP TY G D +ER A E I +G
Sbjct: 203 YVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTYEGSVDLDSID-VEREAIEAQINNFG 261
Query: 190 QTPRQLFKSAHP 201
QTP QLF HP
Sbjct: 262 QTPVQLFTKPHP 273
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. Length = 275 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 62.0 bits (151), Expect = 1e-10
Identities = 56/213 (26%), Positives = 88/213 (41%), Gaps = 26/213 (12%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
PD L G G I V++ E + L GH+ V D+ A + S
Sbjct: 19 PDGKLLATGSGDGTIKVWDLETG---------ELLRTLKGHTGPVRDVAASADGTYLASG 69
Query: 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453
S D T LWD+ T +R + VS V S +G I S ++ +I
Sbjct: 70 SSDKTIRLWDLETGECVRTLTGHTS--YVSSVAFS-PDGRILS---SSSRDKTIKVWDVE 123
Query: 454 NAQLITSLASELR-ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY--KLAHLLTLNTN 510
+ +T+L + SV FS + + DGTI+LW K LT +T
Sbjct: 124 TGKCLTTLRGHTDWVNSVAFS-----PDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG 178
Query: 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
V +V +S D + L +S+++G + +W+ S+
Sbjct: 179 ---EVNSVAFSPDGEKLLSSSSDGTIKLWDLST 208
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 54.3 bits (131), Expect = 5e-08
Identities = 41/174 (23%), Positives = 76/174 (43%), Gaps = 15/174 (8%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428
T L GH+ V + + SSS+DGT LWD+ T + + V+ V S
Sbjct: 129 TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLT--GHTGEVNSVAFS 186
Query: 429 ETNGEIASVLQTTKTGGSILRLHTINA-QLITSLAS-ELRITSVTFSNAPEGVSQNVIVT 486
++ S + ++L ++ + + +L E + SV FS ++ +
Sbjct: 187 PDGEKLLSS-----SSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSP-----DGYLLAS 236
Query: 487 GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
G DGTI++W + TL + V ++ +S D + L + + +G + IW+
Sbjct: 237 GSEDGTIRVWDLRTGECVQTL-SGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 3e-07
Identities = 40/177 (22%), Positives = 73/177 (41%), Gaps = 19/177 (10%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH+ VT + + + S DGT +WD+ T +R PV V S
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRT--LKGHTGPVRDVAASAD 62
Query: 431 NGEIASVLQTTKTGGSILRLHTINA-QLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGH 488
+AS + +RL + + + +L ++SV FS ++ +
Sbjct: 63 GTYLASG-----SSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSP-----DGRILSSSS 112
Query: 489 SDGTIQLWSG--YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
D TI++W K L +T+ V +V +S D + +S+ +G + +W+ +
Sbjct: 113 RDKTIKVWDVETGKCLTTLRGHTD---WVNSVAFSPDGTFVASSSQDGTIKLWDLRT 166
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 48.9 bits (115), Expect = 4e-06
Identities = 41/178 (23%), Positives = 70/178 (39%), Gaps = 9/178 (5%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425
L GHS+ V + + S S DGT LWD+ T + + PVS +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSL 334
Query: 426 TMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIV 485
+ S + S T + L T S + SV+FS V+
Sbjct: 335 SFSPDGSLLVSGGSDDGT-IRLWDLRTGKPLKTLEGHS--NVLSVSFSP-----DGRVVS 386
Query: 486 TGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543
+G +DGT++LW LL V ++ +S D + L + +++ + +W+ +
Sbjct: 387 SGSTDGTVRLWD-LSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKT 443
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.0 bits (110), Expect = 2e-05
Identities = 46/208 (22%), Positives = 81/208 (38%), Gaps = 9/208 (4%)
Query: 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397
L LG + IL+ ++ + + +L GH +T + + +S S DG
Sbjct: 30 LLSLGSSESGILLLALLSDSLVSLPDL--SSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87
Query: 398 TCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456
T LWD++ I+ + + ++ S I + + L T
Sbjct: 88 TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGKL 147
Query: 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI 516
+ T +TS+ FS + + DGTI+LW L TL + PV
Sbjct: 148 IRTLEGHSESVTSLAFSPD----GKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTD-PVS 202
Query: 517 AVTYSCDSQHLYASNTE-GLVIIWESSS 543
++ +S D L AS + G + +W+ S+
Sbjct: 203 SLAFSPDGGLLIASGSSDGTIRLWDLST 230
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| cd06071 | 275 | Beach BEACH (Beige and Chediak-Higashi) domains, i | 100.0 | |
| PF02138 | 270 | Beach: Beige/BEACH domain; InterPro: IPR000409 The | 100.0 | |
| KOG1787|consensus | 1126 | 100.0 | ||
| KOG1786|consensus | 1081 | 100.0 | ||
| KOG0271|consensus | 480 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0272|consensus | 459 | 100.0 | ||
| KOG0279|consensus | 315 | 100.0 | ||
| KOG0263|consensus | 707 | 100.0 | ||
| KOG0271|consensus | 480 | 99.98 | ||
| KOG0286|consensus | 343 | 99.97 | ||
| KOG0279|consensus | 315 | 99.97 | ||
| KOG0315|consensus | 311 | 99.97 | ||
| KOG0295|consensus | 406 | 99.97 | ||
| KOG0286|consensus | 343 | 99.97 | ||
| KOG0273|consensus | 524 | 99.96 | ||
| KOG0285|consensus | 460 | 99.96 | ||
| KOG0273|consensus | 524 | 99.96 | ||
| KOG0266|consensus | 456 | 99.96 | ||
| KOG0284|consensus | 464 | 99.96 | ||
| KOG0281|consensus | 499 | 99.96 | ||
| KOG0284|consensus | 464 | 99.96 | ||
| KOG0292|consensus | 1202 | 99.96 | ||
| KOG0291|consensus | 893 | 99.96 | ||
| KOG0263|consensus | 707 | 99.95 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0316|consensus | 307 | 99.95 | ||
| KOG0645|consensus | 312 | 99.95 | ||
| KOG0318|consensus | 603 | 99.95 | ||
| KOG0319|consensus | 775 | 99.95 | ||
| KOG0278|consensus | 334 | 99.95 | ||
| KOG0276|consensus | 794 | 99.95 | ||
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0296|consensus | 399 | 99.94 | ||
| KOG0291|consensus | 893 | 99.94 | ||
| KOG1786|consensus | 1081 | 99.94 | ||
| KOG0319|consensus | 775 | 99.94 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.94 | |
| KOG0294|consensus | 362 | 99.94 | ||
| KOG0266|consensus | 456 | 99.94 | ||
| KOG0295|consensus | 406 | 99.94 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0285|consensus | 460 | 99.94 | ||
| KOG0305|consensus | 484 | 99.94 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.94 | |
| KOG0265|consensus | 338 | 99.94 | ||
| KOG0281|consensus | 499 | 99.93 | ||
| KOG0313|consensus | 423 | 99.93 | ||
| KOG0265|consensus | 338 | 99.93 | ||
| KOG0276|consensus | 794 | 99.93 | ||
| KOG0313|consensus | 423 | 99.93 | ||
| KOG0293|consensus | 519 | 99.93 | ||
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.93 | |
| KOG0306|consensus | 888 | 99.93 | ||
| KOG0316|consensus | 307 | 99.93 | ||
| KOG0282|consensus | 503 | 99.93 | ||
| KOG0310|consensus | 487 | 99.93 | ||
| KOG0275|consensus | 508 | 99.92 | ||
| KOG0640|consensus | 430 | 99.92 | ||
| KOG0277|consensus | 311 | 99.92 | ||
| KOG0645|consensus | 312 | 99.92 | ||
| KOG0282|consensus | 503 | 99.92 | ||
| KOG0315|consensus | 311 | 99.92 | ||
| KOG0283|consensus | 712 | 99.92 | ||
| KOG0288|consensus | 459 | 99.92 | ||
| KOG1446|consensus | 311 | 99.92 | ||
| KOG0643|consensus | 327 | 99.92 | ||
| KOG0318|consensus | 603 | 99.91 | ||
| KOG0274|consensus | 537 | 99.91 | ||
| KOG0283|consensus | 712 | 99.91 | ||
| KOG0275|consensus | 508 | 99.91 | ||
| KOG0274|consensus | 537 | 99.91 | ||
| KOG0308|consensus | 735 | 99.91 | ||
| KOG0277|consensus | 311 | 99.91 | ||
| KOG0643|consensus | 327 | 99.91 | ||
| PTZ00421 | 493 | coronin; Provisional | 99.91 | |
| KOG0646|consensus | 476 | 99.9 | ||
| KOG0292|consensus | 1202 | 99.9 | ||
| KOG0647|consensus | 347 | 99.9 | ||
| KOG0973|consensus | 942 | 99.9 | ||
| KOG0310|consensus | 487 | 99.9 | ||
| KOG0300|consensus | 481 | 99.9 | ||
| KOG0299|consensus | 479 | 99.9 | ||
| KOG0289|consensus | 506 | 99.9 | ||
| KOG0264|consensus | 422 | 99.9 | ||
| KOG1407|consensus | 313 | 99.9 | ||
| KOG1408|consensus | 1080 | 99.89 | ||
| KOG0268|consensus | 433 | 99.89 | ||
| KOG0306|consensus | 888 | 99.89 | ||
| KOG0305|consensus | 484 | 99.89 | ||
| KOG1036|consensus | 323 | 99.89 | ||
| KOG0289|consensus | 506 | 99.89 | ||
| KOG0301|consensus | 745 | 99.89 | ||
| KOG0288|consensus | 459 | 99.88 | ||
| PTZ00420 | 568 | coronin; Provisional | 99.88 | |
| KOG0646|consensus | 476 | 99.88 | ||
| KOG0293|consensus | 519 | 99.88 | ||
| KOG1407|consensus | 313 | 99.87 | ||
| KOG0301|consensus | 745 | 99.87 | ||
| KOG0269|consensus | 839 | 99.87 | ||
| KOG0296|consensus | 399 | 99.87 | ||
| KOG1446|consensus | 311 | 99.87 | ||
| KOG0267|consensus | 825 | 99.86 | ||
| KOG1332|consensus | 299 | 99.86 | ||
| KOG0640|consensus | 430 | 99.86 | ||
| KOG0264|consensus | 422 | 99.86 | ||
| KOG0641|consensus | 350 | 99.86 | ||
| KOG0772|consensus | 641 | 99.85 | ||
| KOG1539|consensus | 910 | 99.85 | ||
| KOG0772|consensus | 641 | 99.85 | ||
| KOG0641|consensus | 350 | 99.85 | ||
| KOG2445|consensus | 361 | 99.85 | ||
| KOG0267|consensus | 825 | 99.84 | ||
| KOG1274|consensus | 933 | 99.84 | ||
| KOG0308|consensus | 735 | 99.84 | ||
| KOG0294|consensus | 362 | 99.84 | ||
| KOG0639|consensus | 705 | 99.84 | ||
| KOG4283|consensus | 397 | 99.83 | ||
| KOG0278|consensus | 334 | 99.83 | ||
| KOG0270|consensus | 463 | 99.83 | ||
| KOG1332|consensus | 299 | 99.83 | ||
| KOG0302|consensus | 440 | 99.82 | ||
| KOG0299|consensus | 479 | 99.82 | ||
| KOG0300|consensus | 481 | 99.82 | ||
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.82 | |
| KOG0269|consensus | 839 | 99.82 | ||
| KOG1036|consensus | 323 | 99.82 | ||
| KOG0639|consensus | 705 | 99.81 | ||
| KOG0647|consensus | 347 | 99.81 | ||
| KOG0268|consensus | 433 | 99.81 | ||
| KOG0973|consensus | 942 | 99.81 | ||
| KOG1273|consensus | 405 | 99.81 | ||
| KOG1539|consensus | 910 | 99.8 | ||
| KOG2096|consensus | 420 | 99.8 | ||
| KOG1408|consensus | 1080 | 99.8 | ||
| KOG2055|consensus | 514 | 99.79 | ||
| KOG1274|consensus | 933 | 99.79 | ||
| KOG2096|consensus | 420 | 99.79 | ||
| KOG2048|consensus | 691 | 99.79 | ||
| KOG1009|consensus | 434 | 99.79 | ||
| KOG0270|consensus | 463 | 99.79 | ||
| KOG4283|consensus | 397 | 99.78 | ||
| KOG2106|consensus | 626 | 99.78 | ||
| KOG1034|consensus | 385 | 99.77 | ||
| KOG4378|consensus | 673 | 99.77 | ||
| KOG2445|consensus | 361 | 99.77 | ||
| KOG1273|consensus | 405 | 99.77 | ||
| KOG0302|consensus | 440 | 99.76 | ||
| KOG0321|consensus | 720 | 99.76 | ||
| KOG4378|consensus | 673 | 99.75 | ||
| KOG2055|consensus | 514 | 99.75 | ||
| KOG0307|consensus | 1049 | 99.74 | ||
| KOG2048|consensus | 691 | 99.74 | ||
| KOG1188|consensus | 376 | 99.74 | ||
| KOG0303|consensus | 472 | 99.73 | ||
| KOG4328|consensus | 498 | 99.72 | ||
| KOG0642|consensus | 577 | 99.72 | ||
| KOG2106|consensus | 626 | 99.72 | ||
| KOG0321|consensus | 720 | 99.71 | ||
| KOG2919|consensus | 406 | 99.71 | ||
| KOG0771|consensus | 398 | 99.71 | ||
| KOG4328|consensus | 498 | 99.71 | ||
| KOG0322|consensus | 323 | 99.69 | ||
| KOG0307|consensus | 1049 | 99.68 | ||
| KOG1063|consensus | 764 | 99.68 | ||
| KOG1538|consensus | 1081 | 99.68 | ||
| KOG0290|consensus | 364 | 99.67 | ||
| KOG1063|consensus | 764 | 99.66 | ||
| KOG1007|consensus | 370 | 99.66 | ||
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.65 | |
| KOG0650|consensus | 733 | 99.65 | ||
| KOG1524|consensus | 737 | 99.63 | ||
| KOG1445|consensus | 1012 | 99.62 | ||
| KOG1007|consensus | 370 | 99.62 | ||
| KOG0303|consensus | 472 | 99.62 | ||
| KOG1523|consensus | 361 | 99.61 | ||
| KOG1188|consensus | 376 | 99.61 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.6 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.59 | |
| KOG1587|consensus | 555 | 99.59 | ||
| KOG1538|consensus | 1081 | 99.59 | ||
| KOG0290|consensus | 364 | 99.59 | ||
| KOG1009|consensus | 434 | 99.59 | ||
| KOG0649|consensus | 325 | 99.57 | ||
| KOG2919|consensus | 406 | 99.56 | ||
| KOG1034|consensus | 385 | 99.56 | ||
| KOG0644|consensus | 1113 | 99.56 | ||
| KOG1310|consensus | 758 | 99.55 | ||
| KOG0644|consensus | 1113 | 99.54 | ||
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.54 | |
| KOG1517|consensus | 1387 | 99.52 | ||
| KOG0649|consensus | 325 | 99.52 | ||
| KOG0650|consensus | 733 | 99.51 | ||
| KOG2139|consensus | 445 | 99.5 | ||
| KOG4227|consensus | 609 | 99.5 | ||
| KOG1517|consensus | 1387 | 99.5 | ||
| KOG1240|consensus | 1431 | 99.49 | ||
| KOG1587|consensus | 555 | 99.49 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.48 | |
| KOG1524|consensus | 737 | 99.47 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.47 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.46 | |
| KOG1240|consensus | 1431 | 99.46 | ||
| KOG2110|consensus | 391 | 99.45 | ||
| KOG1445|consensus | 1012 | 99.45 | ||
| KOG2110|consensus | 391 | 99.45 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.43 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.42 | |
| KOG0642|consensus | 577 | 99.42 | ||
| KOG4227|consensus | 609 | 99.4 | ||
| KOG3881|consensus | 412 | 99.4 | ||
| KOG1963|consensus | 792 | 99.39 | ||
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 99.38 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.38 | |
| KOG2394|consensus | 636 | 99.37 | ||
| KOG2394|consensus | 636 | 99.37 | ||
| KOG4497|consensus | 447 | 99.37 | ||
| KOG0322|consensus | 323 | 99.35 | ||
| KOG1963|consensus | 792 | 99.35 | ||
| KOG1523|consensus | 361 | 99.33 | ||
| KOG1272|consensus | 545 | 99.33 | ||
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 99.32 | |
| KOG0771|consensus | 398 | 99.31 | ||
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.31 | |
| KOG2321|consensus | 703 | 99.3 | ||
| KOG1272|consensus | 545 | 99.3 | ||
| KOG2111|consensus | 346 | 99.26 | ||
| KOG2139|consensus | 445 | 99.26 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 99.25 | |
| KOG2321|consensus | 703 | 99.24 | ||
| KOG0974|consensus | 967 | 99.24 | ||
| KOG1409|consensus | 404 | 99.23 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.21 | |
| KOG0974|consensus | 967 | 99.2 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 99.2 | |
| KOG2111|consensus | 346 | 99.19 | ||
| KOG3881|consensus | 412 | 99.19 | ||
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 99.19 | |
| KOG4497|consensus | 447 | 99.19 | ||
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 99.18 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG1064|consensus | 2439 | 99.16 | ||
| KOG1310|consensus | 758 | 99.16 | ||
| KOG4547|consensus | 541 | 99.15 | ||
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.14 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 99.08 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 99.07 | |
| KOG4547|consensus | 541 | 99.04 | ||
| KOG1334|consensus | 559 | 99.03 | ||
| KOG1064|consensus | 2439 | 99.01 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 99.01 | |
| KOG2315|consensus | 566 | 98.99 | ||
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.97 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.97 | |
| KOG0280|consensus | 339 | 98.95 | ||
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.95 | |
| KOG4532|consensus | 344 | 98.9 | ||
| KOG1354|consensus | 433 | 98.9 | ||
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.89 | |
| KOG0280|consensus | 339 | 98.87 | ||
| KOG2041|consensus | 1189 | 98.87 | ||
| KOG4532|consensus | 344 | 98.86 | ||
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.85 | |
| KOG4190|consensus | 1034 | 98.84 | ||
| KOG1354|consensus | 433 | 98.81 | ||
| KOG2041|consensus | 1189 | 98.8 | ||
| KOG1409|consensus | 404 | 98.8 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.79 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.78 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.78 | |
| KOG4190|consensus | 1034 | 98.76 | ||
| KOG1334|consensus | 559 | 98.75 | ||
| KOG3914|consensus | 390 | 98.74 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.7 | |
| KOG3914|consensus | 390 | 98.63 | ||
| KOG2315|consensus | 566 | 98.63 | ||
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.62 | |
| KOG4714|consensus | 319 | 98.62 | ||
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.62 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.61 | |
| KOG2066|consensus | 846 | 98.61 | ||
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.6 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.58 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.58 | |
| KOG0882|consensus | 558 | 98.56 | ||
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.53 | |
| KOG1912|consensus | 1062 | 98.52 | ||
| KOG0309|consensus | 1081 | 98.52 | ||
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.52 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.51 | |
| KOG0882|consensus | 558 | 98.45 | ||
| KOG2695|consensus | 425 | 98.43 | ||
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.4 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 98.35 | |
| KOG2695|consensus | 425 | 98.34 | ||
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 98.33 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.33 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.32 | |
| KOG4714|consensus | 319 | 98.32 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.31 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.31 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.29 | |
| KOG1787|consensus | 1126 | 98.26 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.25 | |
| KOG1275|consensus | 1118 | 98.25 | ||
| KOG1275|consensus | 1118 | 98.24 | ||
| KOG1920|consensus | 1265 | 98.19 | ||
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.19 | |
| KOG1832|consensus | 1516 | 98.16 | ||
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 98.14 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 98.09 | |
| KOG2114|consensus | 933 | 98.09 | ||
| KOG3617|consensus | 1416 | 98.09 | ||
| KOG0309|consensus | 1081 | 98.08 | ||
| KOG2114|consensus | 933 | 98.07 | ||
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.06 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.03 | |
| KOG2314|consensus | 698 | 98.02 | ||
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 98.02 | |
| KOG1832|consensus | 1516 | 97.99 | ||
| KOG1920|consensus | 1265 | 97.99 | ||
| KOG4649|consensus | 354 | 97.98 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.97 | |
| KOG1008|consensus | 783 | 97.93 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 97.92 | |
| KOG1645|consensus | 463 | 97.88 | ||
| KOG1912|consensus | 1062 | 97.87 | ||
| KOG3621|consensus | 726 | 97.84 | ||
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.84 | |
| KOG2066|consensus | 846 | 97.81 | ||
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.75 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.74 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.73 | |
| KOG2314|consensus | 698 | 97.72 | ||
| KOG1645|consensus | 463 | 97.7 | ||
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.69 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 97.66 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 97.63 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.55 | |
| KOG1008|consensus | 783 | 97.5 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 97.48 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 97.47 | |
| KOG3617|consensus | 1416 | 97.39 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.38 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 97.37 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.35 | |
| KOG4640|consensus | 665 | 97.32 | ||
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 97.29 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 97.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 97.24 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 97.2 | |
| KOG3621|consensus | 726 | 97.16 | ||
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.16 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 97.15 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.15 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 97.14 | |
| KOG2395|consensus | 644 | 96.99 | ||
| KOG4640|consensus | 665 | 96.95 | ||
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.94 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.92 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 96.91 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.87 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.86 | |
| KOG4649|consensus | 354 | 96.71 | ||
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 96.66 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 96.65 | |
| KOG2444|consensus | 238 | 96.51 | ||
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.51 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 96.51 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.49 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 96.45 | |
| KOG2079|consensus | 1206 | 96.42 | ||
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.25 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 96.16 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 96.06 | |
| KOG4441|consensus | 571 | 95.97 | ||
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 95.92 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 95.87 | |
| KOG2395|consensus | 644 | 95.83 | ||
| KOG1897|consensus | 1096 | 95.76 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 95.75 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 95.74 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 95.61 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 95.6 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 95.49 | |
| KOG2444|consensus | 238 | 95.44 | ||
| KOG2079|consensus | 1206 | 95.41 | ||
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 95.14 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 95.13 | |
| KOG1897|consensus | 1096 | 95.03 | ||
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.87 | |
| KOG3630|consensus | 1405 | 94.74 | ||
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.6 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 94.53 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.48 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.4 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 94.22 | |
| PF10647 | 253 | Gmad1: Lipoprotein LpqB beta-propeller domain; Int | 94.21 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 94.17 | |
| PF12234 | 631 | Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0 | 94.15 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 94.06 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.04 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.7 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 93.63 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 93.52 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 93.17 | |
| PRK10115 | 686 | protease 2; Provisional | 93.08 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 92.88 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 92.83 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 92.66 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 92.62 | |
| TIGR03074 | 764 | PQQ_membr_DH membrane-bound PQQ-dependent dehydrog | 92.61 | |
| KOG3630|consensus | 1405 | 92.6 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 92.37 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 91.81 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 91.4 | |
| KOG1900|consensus | 1311 | 91.32 | ||
| KOG4441|consensus | 571 | 90.84 | ||
| PHA03098 | 534 | kelch-like protein; Provisional | 90.79 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 90.74 | |
| KOG2280|consensus | 829 | 90.38 | ||
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 90.31 | |
| PF14655 | 415 | RAB3GAP2_N: Rab3 GTPase-activating protein regulat | 90.18 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 89.96 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 89.81 | |
| KOG4499|consensus | 310 | 89.77 | ||
| KOG1916|consensus | 1283 | 89.53 | ||
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 89.53 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 89.52 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 89.51 | |
| TIGR02604 | 367 | Piru_Ver_Nterm putative membrane-bound dehydrogena | 89.07 | |
| KOG2280|consensus | 829 | 89.06 | ||
| COG5167 | 776 | VID27 Protein involved in vacuole import and degra | 88.9 | |
| PF02333 | 381 | Phytase: Phytase; InterPro: IPR003431 Phytase (3.1 | 88.61 | |
| KOG2247|consensus | 615 | 88.26 | ||
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 88.22 | |
| PF14761 | 215 | HPS3_N: Hermansky-Pudlak syndrome 3 | 88.12 | |
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 88.01 | |
| PHA02790 | 480 | Kelch-like protein; Provisional | 87.72 | |
| PLN00033 | 398 | photosystem II stability/assembly factor; Provisio | 87.51 | |
| TIGR01063 | 800 | gyrA DNA gyrase, A subunit. This model describes t | 87.5 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 87.07 | |
| KOG2377|consensus | 657 | 86.56 | ||
| KOG1900|consensus | 1311 | 86.37 | ||
| PRK13684 | 334 | Ycf48-like protein; Provisional | 86.32 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 86.08 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 85.83 | |
| PF10313 | 43 | DUF2415: Uncharacterised protein domain (DUF2415); | 85.61 | |
| KOG4499|consensus | 310 | 84.94 | ||
| KOG1898|consensus | 1205 | 84.63 | ||
| PF05935 | 477 | Arylsulfotrans: Arylsulfotransferase (ASST); Inter | 84.28 | |
| TIGR03118 | 336 | PEPCTERM_chp_1 conserved hypothetical protein TIGR | 83.35 | |
| KOG4460|consensus | 741 | 83.08 | ||
| PF07569 | 219 | Hira: TUP1-like enhancer of split; InterPro: IPR01 | 82.63 | |
| PRK05560 | 805 | DNA gyrase subunit A; Validated | 82.21 | |
| COG5290 | 1243 | IkappaB kinase complex, IKAP component [Transcript | 81.94 | |
| COG1520 | 370 | FOG: WD40-like repeat [Function unknown] | 81.51 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 80.9 | |
| PF10214 | 765 | Rrn6: RNA polymerase I-specific transcription-init | 80.52 | |
| COG4590 | 733 | ABC-type uncharacterized transport system, permeas | 80.25 | |
| PF14781 | 136 | BBS2_N: Ciliary BBSome complex subunit 2, N-termin | 80.23 |
| >cd06071 Beach BEACH (Beige and Chediak-Higashi) domains, implicated in membrane trafficking, are present in a family of proteins conserved throughout eukaryotes | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-75 Score=561.69 Aligned_cols=195 Identities=52% Similarity=0.953 Sum_probs=183.8
Q ss_pred CCCCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCc
Q psy10778 5 VGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLAD 84 (556)
Q Consensus 5 ~~~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~ 84 (556)
+.....++||||+|||+|++|++||+|+||||++++.||+|+||.|||+|+||+++|++++. .++|++||||||||+||
T Consensus 80 ~~~~~~~~~~y~shyS~~~~V~~yLvR~ePft~~~~~lq~g~fd~~~RlF~si~~~~~~~~~-~~~d~~ELIPEFf~~Pe 158 (275)
T cd06071 80 DSDDSDPPFHYGSHYSNPAIVLYYLVRLEPFTTLHLSLQGGHFDAADRLFNSIPSSWRSASE-NPSDVKELIPEFYYLPE 158 (275)
T ss_pred hcccCCCCCCCCCCCCCHHHHHHHHhHcCCccHHHHHHhcCCcCCcccchhhHHHHHHHHHc-cCCCcccCCchHhcCHH
Confidence 34566789999999999999999999999999999999999999999999999999998764 58999999999999999
Q ss_pred ceecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCccc
Q psy10778 85 ILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATY 164 (556)
Q Consensus 85 ~~~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~y 164 (556)
||+|.|+++||+ ++|+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++|.|||+|++|
T Consensus 159 ~f~N~n~~~lg~-~~g~~~~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y 237 (275)
T cd06071 159 FFLNINKFDFGK-QDGEKVNDVELPPWAKSPEEFIRKHREALESEYVSKNLHHWIDLIFGYKQRGEEAVKAKNVFHPLTY 237 (275)
T ss_pred HHhCCCcccccc-cCCCcccceecCCCcCCHHHHHHHHHHHHcccHhhhhhhhhhhhhcccccCCHHHHHhcCCCccccc
Confidence 999999999999 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc-ccCCCCCHHHHHHHHHHHHhcCCcccccccCCCCCC
Q psy10778 165 YGF-DIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 203 (556)
Q Consensus 165 ~~~-~~~~~~d~~~~~~~~~~~~~~g~~p~~lf~~~h~~~ 203 (556)
++. +.+..+ .++.++++++.+|||+|.|||++|||+|
T Consensus 238 ~~~~~~~~~~--~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 275 (275)
T cd06071 238 EGSVDLDSID--VEREAIEAQINNFGQTPVQLFTKPHPKR 275 (275)
T ss_pred CCccccchhh--HHHHHHHHHHHhcCCCcchhccCCCCCC
Confidence 983 333333 7889999999999999999999999974
|
This group contains human lysosomal trafficking regulator (LYST), LPS-responsive and beige-like anchor (LRBA) and neurobeachin. Disruption of LYST leads to Chediak-Higashi syndrome, characterized by severe immunodeficiency, albinism, poor blood coagulation and neurologic problems. Neurobeachin is a candidate gene linked to autism. LBRA seems to be upregulated in several cancer types. It has been shown that the BEACH domain itself is important for the function of these proteins. |
| >PF02138 Beach: Beige/BEACH domain; InterPro: IPR000409 The BEACH domain is found in eukaryotic proteins that have diverse cellular functions ranging from lysosomal traffic to apoptosis and cytokinesisin vesicle trafficking, membrane dynamics, and receptor signaling | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-72 Score=542.62 Aligned_cols=186 Identities=54% Similarity=0.993 Sum_probs=138.1
Q ss_pred CCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCcceecCC
Q psy10778 11 EPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADILVNNE 90 (556)
Q Consensus 11 ~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~~~~n~~ 90 (556)
++||||+|||++++|++||+|+||||++++.||+|+||+|||+|+||+++|+++. .+++|++|||||||++||||+|.|
T Consensus 85 ~~~~y~s~ys~~~~v~~~L~R~ePft~l~~~lq~g~fD~~~r~F~SI~~~~~~~~-~~~~d~~EliPEff~~Pe~f~N~n 163 (270)
T PF02138_consen 85 PPFHYGSHYSSPGTVLYYLVRLEPFTSLHIDLQSGKFDVPDRLFSSIEDTWNSVT-ENMNDVKELIPEFFYLPEFFKNIN 163 (270)
T ss_dssp ---SBSS-SS-HHHHHHHTTTSTTHHHHHHHCCTTS---CCCSS-BHHHHHHHHH-H-TT----B-GGGGT-GGGGS-TT
T ss_pred CCccccCCCCCcchhhhhhcccChHHHHHHHHhccccCCchHHHHHHHHHHHHhh-cCCccccccChhhhCCHHHhcccc
Confidence 8999999999999999999999999999999999999999999999999999865 779999999999999999999999
Q ss_pred CCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCccccccccC
Q psy10778 91 GFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGFDIA 170 (556)
Q Consensus 91 ~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~y~~~~~~ 170 (556)
+|+||+ |+.|+||+||+||++|++||++||+||||+|||++||+||||||||||+|++|++|.|||+|++|++..
T Consensus 164 ~~~~g~---~~~~~dV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLIFG~kq~G~~A~~a~Nvf~p~~Y~~~~-- 238 (270)
T PF02138_consen 164 NFDLGK---GEDVDDVELPPWAKSPFEFVYKHRKALESDYVSQNLHHWIDLIFGYKQRGKEAVEAKNVFHPLTYEDSW-- 238 (270)
T ss_dssp -SS--B---S-B-SS-B--TT-SSHHHHHHHHHHHHCSHHHHTTHHHHHHHHTSCCCSCHHHHHTT--B-CCCSTTS---
T ss_pred cccccC---CCccceeecCCccchHHHHHHHHHHHHhhhHHHhhhhHHHHHhhCcccccHHHHHHhhcccccCCCccc--
Confidence 999998 999999999999999999999999999999999999999999999999999999999999999999854
Q ss_pred CCCCHHHHHHHHHHHHhcCCcccccccCCCCCC
Q psy10778 171 AIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 203 (556)
Q Consensus 171 ~~~d~~~~~~~~~~~~~~g~~p~~lf~~~h~~~ 203 (556)
+.|+.++.++++++.+|||+|+|||++|||+|
T Consensus 239 -~~~~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 270 (270)
T PF02138_consen 239 -IEDPMEREAIEAQLKNFGQVPIQLFTKPHPKR 270 (270)
T ss_dssp ---SHHHHHHHHHHHHHC--------SS-----
T ss_pred -cCCHHHHHHHHHHHHhcCCChHHHhCCCCCCC
Confidence 77899999999999999999999999999974
|
The name BEACH is derived from beige and Chediak-Higashi syndrome (CHS). CHS is a rare, autosomal recessive disorder that can cause severe immunodeficiency and albinism in humans and other mammals, and beige is the name for the CHS disease in mice [, ]. The BEACH domain was first described in the lysosomal-trafficking regulators Beige protein and its human homologue CHS protein Q99698 from SWISSPROT. It is also found in distantly related proteins like, for example, the FAN proteins O35242 from SWISSPROT and Q92636 from SWISSPROT which are factor associated with neutral sphingomyelinase activation []. It has also been described in Dictyostelium proteins Lvs []. The BEACH domain is usually followed by a series of WD repeats (PDOC00574 from PROSITEDOC). The function of the BEACH domain is unknown.; PDB: 1MI1_B 1T77_C. |
| >KOG1787|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-57 Score=497.82 Aligned_cols=200 Identities=47% Similarity=0.850 Sum_probs=194.1
Q ss_pred CCCCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCc
Q psy10778 5 VGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLAD 84 (556)
Q Consensus 5 ~~~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~ 84 (556)
..|+.++.|||+||||+++.|++||+|+||||++|+++|+|+||++||.|+|++..|+.+. .+++|||||||||||+||
T Consensus 551 ~~D~~i~~~~~~thys~~~~~l~~l~rvepf~S~~~~l~~gkfd~~dr~~~sv~~~~r~~l-~d~sdvkelipeffy~p~ 629 (1126)
T KOG1787|consen 551 FEDQAIPSFHYGTHYSSAANVLAYLLRVEPFTSLHLQLQDGKFDHADRAFSSVASSWRRCL-RDTSDVKELIPEFFYFPE 629 (1126)
T ss_pred cccccccccccccccccccceeeeeeecCccccccccccccccccchhhHHHHHHHHhhhc-cchhhHHHhhhHHHHHHH
Confidence 4678889999999999999999999999999999999999999999999999999999754 789999999999999999
Q ss_pred ceecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCccc
Q psy10778 85 ILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATY 164 (556)
Q Consensus 85 ~~~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~y 164 (556)
+|.|.|.+.+|.+++|+.|.||.||||+++|++|+..||+||||+|||.++|+||||||||||+|++|++|+|||++++|
T Consensus 630 ll~~~~~~~lg~~~dg~~vi~v~lppwa~~pe~f~~~nr~aLes~fvs~~l~~widlifg~Kq~g~ea~~a~nvf~~~ty 709 (1126)
T KOG1787|consen 630 LLVNSNLYNLGVRVDGEPVIDVVLPPWAKSPEDFETRNREALESEFVSCQLHQWIDLIFGYKQRGPEAVRAMNVFYYLTY 709 (1126)
T ss_pred HHhccccccceeecCCccceeeecccccCCHHHHHHHHHHHhhccccccccchhHHhhhhHhhcCHHHHHhhhhhccCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cc-cccCCCCCHHHH-HHHHHHHHhcCCcccccccCCCCCCCC
Q psy10778 165 YG-FDIAAIPDPLER-TAWETMIRTYGQTPRQLFKSAHPMNVK 205 (556)
Q Consensus 165 ~~-~~~~~~~d~~~~-~~~~~~~~~~g~~p~~lf~~~h~~~~~ 205 (556)
|| ++.+.++|+.++ ++++.+|..|||+|.|+|.++||++.+
T Consensus 710 eG~v~~~~~~d~~~~~eai~~~i~~f~~~~~~~~~e~~~~~~~ 752 (1126)
T KOG1787|consen 710 EGAVDLDSITDQVLRTEAIEAQIASFGQTPSQLLQEQHPPRAS 752 (1126)
T ss_pred cccccccccCChhHHHHHHHHHHhhccccchhhhhhccCCcch
Confidence 99 899999999999 799999999999999999999999654
|
|
| >KOG1786|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-44 Score=402.21 Aligned_cols=465 Identities=25% Similarity=0.332 Sum_probs=302.9
Q ss_pred CCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCc-CccccccccccccCccee
Q psy10778 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSEST-TDVKELIPELFYLADILV 87 (556)
Q Consensus 9 ~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~-~~~~e~~pef~~~~~~~~ 87 (556)
..+.|||++||+++++|..||+|.+|++.+++.++.|.|+.+||+|+|..++|..+..+++ ++++|||||||+.|+||.
T Consensus 424 ~~~~~~~~t~~~S~~~~~~y~~r~~p~~~~~~~i~~~~~~~~d~~~~s~~~~Wt~~~~~~~~~~i~eli~~~~~~p~~l~ 503 (1081)
T KOG1786|consen 424 EDPLFHVLTHLLSPLIVMSYFARKNPLSELFLSIRRGYFPIADRLFHSRMQAWTPDEKGNLHSCIKELIPKFVNDPSFLE 503 (1081)
T ss_pred ccccccccccccchhhhhhhhhhcCcchHHHHHhhcccccccchhhhhhhcccCcccccccchhHHHHHHHhccChHHHh
Confidence 5678999999999999999999999999999999999999999999999999987764455 799999999999999999
Q ss_pred cCCCCCcccccCCceeCeEecCCCCC-CHHHHHHHHHHhhhhhhhhcccCceEEEE-eecCCCCHHHHhccccCC----C
Q psy10778 88 NNEGFDFGVRQNGQRVDSVILPPWAS-DPRTFIMVHRQSLESELVSENLPHWIDLV-FGYKQSGKAAVDAINVFH----P 161 (556)
Q Consensus 88 n~~~~~~~~~~~~~~~~~v~lp~w~~-~~~~f~~~~r~~les~~v~~~l~~widl~-fg~~~~~~~~~~~~n~~~----~ 161 (556)
|.+.++||.+|+|..++||+||||+. +|++||++||+|||++|||++||+|||++ |||||+|++|+.+.|||+ +
T Consensus 504 n~~~~~lg~~~~~~~~~~~~lP~ws~~~~~~fi~~h~~ale~~~vs~~Lh~wId~~~fgykq~g~~~~~~~nv~~~~~~~ 583 (1081)
T KOG1786|consen 504 NSVILDLGEKQNGDSVDDVILPPWSSSSPREFIRDHRKALESNRVSQRLHHWIDLTIFGYKQNGSAAVIAMNVFLVSNKH 583 (1081)
T ss_pred hhhhhhhhhhcccccccceecCcccccCHHHHHHHHhhcccccchhhccccceeeehhhhhhcchHHHHHHHHHhhhhhh
Confidence 99999999999999999999999977 79999999999999999999999999999 999999999999999999 9
Q ss_pred ccccc-cccCCCCCHHHHHHHHHHHHhcCCcccccccCCCCCCCCCC--CCccccccccccccccc-----ccce-ecCC
Q psy10778 162 ATYYG-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMNVKKL--TPAQESRVEVIPNIRGL-----VWGS-YVGS 232 (556)
Q Consensus 162 ~~y~~-~~~~~~~d~~~~~~~~~~~~~~g~~p~~lf~~~h~~~~~~~--~~~~~~~~~~~~~v~~l-----~~g~-~~~s 232 (556)
++|++ +|.+.+.|+..+.+++.++.+|||+|+|+|.++|+.+.... .-........++....- ..+. |...
T Consensus 584 l~~~~~v~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (1081)
T KOG1786|consen 584 LFYVNSVLNLRGYDPLEQNILIVSNNHFKQTIKQLFPKKHSVSELTEGILNTSSLSNLQLPGSTFSDNNTQRVGNIYLLS 663 (1081)
T ss_pred hccccchhhhcccchhhhhhhHHHhhccccchhhcccccccccccchhhcccchhhhhhccccccccccccccccccccc
Confidence 99997 89999999999999999999999999999999999832211 00000000001110000 0000 0000
Q ss_pred CCCCCCeeEeccCCCCCcceeEeeccCCeEeeecceeeeeeeccCcccccccccccccCCcceEEeccCC-----CeEEE
Q psy10778 233 PDEPPPCIVWKHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAGMICWNECD-----NLIRL 307 (556)
Q Consensus 233 p~~~~~~~~~~~~~~~~i~~l~~l~~~~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~l~~gs~D-----g~I~l 307 (556)
+ +.. +.+...+..+ .+.+.+ .++..+... ....-.-..+..++..+ ...++
T Consensus 664 ~------~~~-~~~~~~~~~~--~~~~~i-------~~l~~~~n~--------~~~~~~~~k~~~~~~~~~~~~~~~~~l 719 (1081)
T KOG1786|consen 664 S------LES-KNLASSVTQI--LTHGKI-------KLLTVYHNP--------ILILKALNKYTNEEQSNGNVNRRRLLL 719 (1081)
T ss_pred h------hhh-HhHhhhcchh--hhhhhh-------hhccccccc--------ccchHHHHHHHhhhcccccccccceec
Confidence 0 000 0000000000 000000 000000000 00000001144555555 44444
Q ss_pred EeCCCCCCcceEcC-CCCCceEEEEEcCCC--CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEc
Q psy10778 308 KMSKELPATPVIRP-PLGATIATATTAPDC--HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLC 384 (556)
Q Consensus 308 w~~~~~~~~~~~~~-~h~~~V~~i~~s~dg--~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s 384 (556)
-.....+....... .....+++..+.... +.+++|+.++.+.+|+.............+......+|...|+++.+.
T Consensus 720 ~~~~~d~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~ 799 (1081)
T KOG1786|consen 720 DSYPQDKEPLISEILAEQSQITSKGALDQRSERTLVTGDTSSSIKVLEVIPQKTHQRARWHKDERAECSHTLDITELENR 799 (1081)
T ss_pred ccCCccccchHHHHHHhhhhhhhhhhhhhhhccceeeccccceeehhhcccchhhhcccccchHHHhhhccccceecccc
Confidence 33332222111111 122344444444333 789999999999999987642222333335556677899999999854
Q ss_pred c------CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 385 A------GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 385 ~------~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
+ ....+..++.++++.+||+.+...++.+.. + ...+..+.....+..+++... ....+.+|...|+.+
T Consensus 800 ~~~~~~~~~~~i~~~~~~~~~~i~~Ls~~~~~~ql~~-~-~~~~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~ 873 (1081)
T KOG1786|consen 800 ESILAAQANLLIPRKSTSTTVIIWDLSTLRFQRQLTA-F-EILLSNLRILRLGGENASISA----FTSVLSANQIIGDLL 873 (1081)
T ss_pred hhhhhhhhheeecccccccceeeehhhhhhhhhcccc-c-cchhHHHHHHHhccchhhhhh----hhhhhcccccccchh
Confidence 3 344677788889999999998776666655 4 333332222222222222000 123455565555433
Q ss_pred EEeec-----------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 459 TSLAS-----------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 459 ~~~~~-----------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
..... ...+..++.+...+.....++..+..|+.+++||+.....
T Consensus 874 a~~~~~~~~~~~n~~y~~~~~~~agrs~nd~~q~~v~~~~~ad~~~k~~~l~~~~~ 929 (1081)
T KOG1786|consen 874 AITNTWEEGLISNFEYLTMLNLLAGRSFNDWMQYPVFPWVLADYVSKVLDLQDLLI 929 (1081)
T ss_pred hhhhhhccccccchHHHHHHHHhhcCcHHHhhcCcceEEEecccceeeEeeecccc
Confidence 22210 0111222222112222336899999999999999865543
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-34 Score=271.78 Aligned_cols=232 Identities=19% Similarity=0.288 Sum_probs=204.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.|++|+.|.++|+||+.+.....+.+ +|...|.|++|+|||+.||+|+.||+|++||..+++ .....+.+|
T Consensus 129 ~l~tGsGD~TvR~WD~~TeTp~~t~K-gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~--------~~g~~l~gH 199 (480)
T KOG0271|consen 129 RLVTGSGDTTVRLWDLDTETPLFTCK-GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQ--------QIGRALRGH 199 (480)
T ss_pred eEEecCCCceEEeeccCCCCcceeec-CCccEEEEEEECCCcchhhccccCCeEEEecCCCCC--------cccccccCc
Confidence 89999999999999999987777776 899999999999999999999999999999998873 234678999
Q ss_pred CccEEEEEEcc-----CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 375 SACVTDLYLCA-----GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 375 ~~~V~~l~~s~-----~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+..|++++|.| ..++++++|.||+|+|||+..+++++.+.+ | ..+|+|+.|--+ ++|++++ .|++|+
T Consensus 200 ~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsg-H-T~~VTCvrwGG~-gliySgS-----~DrtIk 271 (480)
T KOG0271|consen 200 KKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSG-H-TASVTCVRWGGE-GLIYSGS-----QDRTIK 271 (480)
T ss_pred ccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEecc-C-ccceEEEEEcCC-ceEEecC-----CCceEE
Confidence 99999999976 567999999999999999999999999999 9 999999999744 6888888 888999
Q ss_pred EEEeC-CcEEEE--------------------------------------------------------------------
Q psy10778 450 LHTIN-AQLITS-------------------------------------------------------------------- 460 (556)
Q Consensus 450 iwdi~-g~~i~~-------------------------------------------------------------------- 460 (556)
+|+.. |.+...
T Consensus 272 vw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 272 VWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred EEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 98763 321110
Q ss_pred -----------e-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEE
Q psy10778 461 -----------L-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 461 -----------~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 528 (556)
+ .|..-|+.+.|| ||+ +++|+++-|..|++||.++|+.+.++. +|-.+|+.++|+.|.++|+
T Consensus 352 ~p~~~kkpi~rmtgHq~lVn~V~fS--Pd~---r~IASaSFDkSVkLW~g~tGk~lasfR-GHv~~VYqvawsaDsRLlV 425 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQALVNHVSFS--PDG---RYIASASFDKSVKLWDGRTGKFLASFR-GHVAAVYQVAWSADSRLLV 425 (480)
T ss_pred cccccccchhhhhchhhheeeEEEC--CCc---cEEEEeecccceeeeeCCCcchhhhhh-hccceeEEEEeccCccEEE
Confidence 0 123457888999 999 999999999999999999999999999 8999999999999999999
Q ss_pred EEcCCCcEEEEEcCCCCCcCe
Q psy10778 529 ASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
+|+.|.++++|++++++...-
T Consensus 426 S~SkDsTLKvw~V~tkKl~~D 446 (480)
T KOG0271|consen 426 SGSKDSTLKVWDVRTKKLKQD 446 (480)
T ss_pred EcCCCceEEEEEeeeeeeccc
Confidence 999999999999999765443
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-33 Score=272.85 Aligned_cols=224 Identities=18% Similarity=0.215 Sum_probs=209.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
-+++++.||++++|++.+...+..+. +|...|..++|+|+|++|+|++.|.+-++||+.++ ..+....||
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~-gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk---------~ElL~QEGH 302 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLE-GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETK---------SELLLQEGH 302 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhh-cchhhheeeeecCCCceeeecccccchhhcccccc---------hhhHhhccc
Confidence 68999999999999999887777776 89999999999999999999999999999999987 455677899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|.+||.+++||+-|..-+|||+++|+.+..+.+ | ..+|..|+|+|+|-.+|+|+ .|++++|||++
T Consensus 303 s~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~g-H-~k~I~~V~fsPNGy~lATgs-----~Dnt~kVWDLR 375 (459)
T KOG0272|consen 303 SKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAG-H-IKEILSVAFSPNGYHLATGS-----SDNTCKVWDLR 375 (459)
T ss_pred ccccceeEecCCCceeeccCccchhheeecccCcEEEEecc-c-ccceeeEeECCCceEEeecC-----CCCcEEEeeec
Confidence 99999999999999999999999999999999999999999 9 99999999999999999999 89999999998
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
.+.+.++ .|..-|+.++|+| ..| .+|+|++.|+++++|...++++++.+. ||++.|.+++.++|+..+++++.
T Consensus 376 ~r~~ly~ipAH~nlVS~Vk~~p-~~g---~fL~TasyD~t~kiWs~~~~~~~ksLa-GHe~kV~s~Dis~d~~~i~t~s~ 450 (459)
T KOG0272|consen 376 MRSELYTIPAHSNLVSQVKYSP-QEG---YFLVTASYDNTVKIWSTRTWSPLKSLA-GHEGKVISLDISPDSQAIATSSF 450 (459)
T ss_pred ccccceecccccchhhheEecc-cCC---eEEEEcccCcceeeecCCCcccchhhc-CCccceEEEEeccCCceEEEecc
Confidence 3455555 5888999999994 367 899999999999999999999999998 99999999999999999999999
Q ss_pred CCcEEEEE
Q psy10778 533 EGLVIIWE 540 (556)
Q Consensus 533 Dg~V~vwd 540 (556)
|.++++|.
T Consensus 451 DRT~KLW~ 458 (459)
T KOG0272|consen 451 DRTIKLWR 458 (459)
T ss_pred Cceeeecc
Confidence 99999995
|
|
| >KOG0272|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-34 Score=275.87 Aligned_cols=235 Identities=20% Similarity=0.230 Sum_probs=219.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+++|+.+|.++||+..+...+..+. +|.+.|.++.|+|. +..+|||+.||++++|++... .++..+.
T Consensus 189 ~laT~swsG~~kvW~~~~~~~~~~l~-gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e---------~~l~~l~ 258 (459)
T KOG0272|consen 189 HLATGSWSGLVKVWSVPQCNLLQTLR-GHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE---------TPLQDLE 258 (459)
T ss_pred eEEEeecCCceeEeecCCcceeEEEe-ccccceeeEEEccCCCccceeeeccCCceeeeccCCC---------cchhhhh
Confidence 89999999999999999988777776 99999999999997 568999999999999999876 7789999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+|...|..++|+|+|++|+|+|-|.+-++||++++..+...++ | ...|.+++|.+||..+++|+ .|..-+|||
T Consensus 259 gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEG-H-s~~v~~iaf~~DGSL~~tGG-----lD~~~RvWD 331 (459)
T KOG0272|consen 259 GHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEG-H-SKGVFSIAFQPDGSLAATGG-----LDSLGRVWD 331 (459)
T ss_pred cchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcc-c-ccccceeEecCCCceeeccC-----ccchhheee
Confidence 9999999999999999999999999999999999999988999 9 99999999999999999999 899999999
Q ss_pred eC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec-CCCEEEE
Q psy10778 453 IN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC-DSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~s 529 (556)
++ |+.+..+ .|...|.+++|+ |+| ..|+||+.|++++|||++..+.+.++. +|.+-|+.+.|+| .|.+|+|
T Consensus 332 lRtgr~im~L~gH~k~I~~V~fs--PNG---y~lATgs~Dnt~kVWDLR~r~~ly~ip-AH~nlVS~Vk~~p~~g~fL~T 405 (459)
T KOG0272|consen 332 LRTGRCIMFLAGHIKEILSVAFS--PNG---YHLATGSSDNTCKVWDLRMRSELYTIP-AHSNLVSQVKYSPQEGYFLVT 405 (459)
T ss_pred cccCcEEEEecccccceeeEeEC--CCc---eEEeecCCCCcEEEeeecccccceecc-cccchhhheEecccCCeEEEE
Confidence 98 8888777 478999999999 999 899999999999999999999999998 8999999999998 7899999
Q ss_pred EcCCCcEEEEEcCCCCCcCeeec
Q psy10778 530 SNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
++.|+++++|..++...+..+..
T Consensus 406 asyD~t~kiWs~~~~~~~ksLaG 428 (459)
T KOG0272|consen 406 ASYDNTVKIWSTRTWSPLKSLAG 428 (459)
T ss_pred cccCcceeeecCCCcccchhhcC
Confidence 99999999999999777666543
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-31 Score=244.56 Aligned_cols=225 Identities=18% Similarity=0.178 Sum_probs=197.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG- 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~- 373 (556)
+..+++.|+++|+||+.+++....+. +|...|.++++++|.+.+++|+.|.+|++|+.... +..++..
T Consensus 77 ~alS~swD~~lrlWDl~~g~~t~~f~-GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~----------ck~t~~~~ 145 (315)
T KOG0279|consen 77 FALSASWDGTLRLWDLATGESTRRFV-GHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGV----------CKYTIHED 145 (315)
T ss_pred eEEeccccceEEEEEecCCcEEEEEE-ecCCceEEEEecCCCceeecCCCcceeeeeeeccc----------EEEEEecC
Confidence 88899999999999999997777776 99999999999999999999999999999998864 2233333
Q ss_pred -CCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 374 -HSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 374 -h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
|++.|+|++|+|. ..+|++++.|+++++||+++.+....+.+ | .+.++.+++||||..+++|+ +||.+.+
T Consensus 146 ~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~g-h-~~~v~t~~vSpDGslcasGg-----kdg~~~L 218 (315)
T KOG0279|consen 146 SHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIG-H-SGYVNTVTVSPDGSLCASGG-----KDGEAML 218 (315)
T ss_pred CCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhcccc-c-cccEEEEEECCCCCEEecCC-----CCceEEE
Confidence 3788999999997 67999999999999999999888889999 9 99999999999999999998 9999999
Q ss_pred EEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CC-----CCCeEEEEEe
Q psy10778 451 HTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NV-----ALPVIAVTYS 521 (556)
Q Consensus 451 wdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h-----~~~V~~l~~s 521 (556)
||++ ++.+..+.+...|.+++|+ |+. +.++...+..|+|||+.++..+..+.. +. .....+++|+
T Consensus 219 wdL~~~k~lysl~a~~~v~sl~fs--pnr----ywL~~at~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws 292 (315)
T KOG0279|consen 219 WDLNEGKNLYSLEAFDIVNSLCFS--PNR----YWLCAATATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWS 292 (315)
T ss_pred EEccCCceeEeccCCCeEeeEEec--CCc----eeEeeccCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEc
Confidence 9998 8999999999999999999 774 555555566799999999888877654 11 2335778999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCC
Q psy10778 522 CDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+||..|++|..|+.|++|.+..
T Consensus 293 ~dG~tLf~g~td~~irv~qv~~ 314 (315)
T KOG0279|consen 293 ADGQTLFAGYTDNVIRVWQVAK 314 (315)
T ss_pred CCCcEEEeeecCCcEEEEEeec
Confidence 9999999999999999999753
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-31 Score=277.96 Aligned_cols=228 Identities=18% Similarity=0.235 Sum_probs=210.2
Q ss_pred eEEeccCCCeEEEEeCCCCCC------------------------------cceEcCCCCCceEEEEEcCCCCEEEEEeC
Q psy10778 295 MICWNECDNLIRLKMSKELPA------------------------------TPVIRPPLGATIATATTAPDCHTLWLGLT 344 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~------------------------------~~~~~~~h~~~V~~i~~s~dg~~l~tgs~ 344 (556)
++|.|..|..|++|.+...++ ......+|.++|..+.|+|+.++|+++++
T Consensus 392 mlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sFsPd~rfLlScSE 471 (707)
T KOG0263|consen 392 MLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSFSPDRRFLLSCSE 471 (707)
T ss_pred hhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeeecccccceeeccC
Confidence 899999999999998873110 11123489999999999999999999999
Q ss_pred CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeE
Q psy10778 345 SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSH 424 (556)
Q Consensus 345 Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~ 424 (556)
|+++|+|.+.+. ..+....||..+|+++.|+|-|-++||||.|++.++|......++|.+.+ | -+.|.|
T Consensus 472 D~svRLWsl~t~---------s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifag-h-lsDV~c 540 (707)
T KOG0263|consen 472 DSSVRLWSLDTW---------SCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAG-H-LSDVDC 540 (707)
T ss_pred Ccceeeeecccc---------eeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcc-c-ccccce
Confidence 999999999987 66678889999999999999999999999999999999999999999999 9 999999
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA 502 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~ 502 (556)
++|+|+..++++|+ .|.+|++||+. |..++.+ .|.++|.+++|| |+| ++|++|+.||.|.+||+.+++
T Consensus 541 v~FHPNs~Y~aTGS-----sD~tVRlWDv~~G~~VRiF~GH~~~V~al~~S--p~G---r~LaSg~ed~~I~iWDl~~~~ 610 (707)
T KOG0263|consen 541 VSFHPNSNYVATGS-----SDRTVRLWDVSTGNSVRIFTGHKGPVTALAFS--PCG---RYLASGDEDGLIKIWDLANGS 610 (707)
T ss_pred EEECCcccccccCC-----CCceEEEEEcCCCcEEEEecCCCCceEEEEEc--CCC---ceEeecccCCcEEEEEcCCCc
Confidence 99999999999999 89999999996 8888888 478999999999 899 999999999999999999999
Q ss_pred EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 503 HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 503 ~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
++..+. +|.+.|.++.||.||..|++|+.|.+|++||+.+.
T Consensus 611 ~v~~l~-~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 611 LVKQLK-GHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred chhhhh-cccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 999998 89999999999999999999999999999999773
|
|
| >KOG0271|consensus | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.4e-31 Score=255.19 Aligned_cols=272 Identities=18% Similarity=0.192 Sum_probs=224.0
Q ss_pred CCCCCcceeEeeccCCeEeeecceeeeeeeccCcccccccc--------cccccC------CcceEEeccCCCeEEEEeC
Q psy10778 245 KHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISS--------LNVIGA------GAGMICWNECDNLIRLKMS 310 (556)
Q Consensus 245 ~~~~~i~~l~~l~~~~v~~~~~~~~~~~~~~~~k~~~~~~~--------~~~~~~------~~~~l~~gs~Dg~I~lw~~ 310 (556)
.|...+..+.-.++|...+-..+...+..+..+++...... +.+.|. ..+++|+++.||+++|||+
T Consensus 155 gH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~ 234 (480)
T KOG0271|consen 155 GHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDT 234 (480)
T ss_pred CCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEc
Confidence 35555556666677766655444444444443332211110 111111 1238999999999999999
Q ss_pred CCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC----
Q psy10778 311 KELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG---- 386 (556)
Q Consensus 311 ~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---- 386 (556)
..+..+..+. +|..+|+|+.|-.+ .+|++|+.|++|++|+...+ .+.+.+.||...|+.++.+.+
T Consensus 235 ~~~~~~~~ls-gHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG---------~~~r~lkGHahwvN~lalsTdy~LR 303 (480)
T KOG0271|consen 235 KLGTCVRTLS-GHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDG---------KLCRELKGHAHWVNHLALSTDYVLR 303 (480)
T ss_pred cCceEEEEec-cCccceEEEEEcCC-ceEEecCCCceEEEEEccch---------hHHHhhcccchheeeeeccchhhhh
Confidence 9887776665 99999999999866 59999999999999999876 677899999999999988822
Q ss_pred -------C-------------------------CEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 387 -------F-------------------------SVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 387 -------~-------------------------~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
+ ..++|||+|.++.+|+-... +++..+.+ | ..-|..+.||||+++
T Consensus 304 tgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtg-H-q~lVn~V~fSPd~r~ 381 (480)
T KOG0271|consen 304 TGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTG-H-QALVNHVSFSPDGRY 381 (480)
T ss_pred ccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhc-h-hhheeeEEECCCccE
Confidence 2 35999999999999987654 47778888 9 999999999999999
Q ss_pred EEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV 511 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h 511 (556)
||+++ -|..|++||-+ |+.+.++. |-..|..++|+ .|. ++|++|+.|.++++||+++.++...+. +|
T Consensus 382 IASaS-----FDkSVkLW~g~tGk~lasfRGHv~~VYqvaws--aDs---RLlVS~SkDsTLKvw~V~tkKl~~DLp-Gh 450 (480)
T KOG0271|consen 382 IASAS-----FDKSVKLWDGRTGKFLASFRGHVAAVYQVAWS--ADS---RLLVSGSKDSTLKVWDVRTKKLKQDLP-GH 450 (480)
T ss_pred EEEee-----cccceeeeeCCCcchhhhhhhccceeEEEEec--cCc---cEEEEcCCCceEEEEEeeeeeecccCC-CC
Confidence 99999 99999999997 99999996 77999999999 888 899999999999999999999999998 89
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 512 ALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 512 ~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
...|.++.|+|||..+++|+.|..+++|.
T Consensus 451 ~DEVf~vDwspDG~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 451 ADEVFAVDWSPDGQRVASGGKDKVLRLWR 479 (480)
T ss_pred CceEEEEEecCCCceeecCCCceEEEeec
Confidence 99999999999999999999999999994
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-29 Score=235.10 Aligned_cols=223 Identities=17% Similarity=0.222 Sum_probs=204.2
Q ss_pred eEEeccCCCeEEEEeCCCC--C---CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKEL--P---ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~---~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
++|+|+-|+...||++.+. + .+.....+|.+-+.|+.|-.| ..|+||+.|.+..+||++++ +.+.
T Consensus 111 ~VAcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~TCalWDie~g---------~~~~ 180 (343)
T KOG0286|consen 111 FVACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMTCALWDIETG---------QQTQ 180 (343)
T ss_pred eEEecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC-CceEecCCCceEEEEEcccc---------eEEE
Confidence 8999999999999999854 2 112223489999999999885 68899999999999999988 6678
Q ss_pred EeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 370 ILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.+.||.+.|.+++++| +++.++||+-|++.++||++.+..++++.+ | .+.|++++|.|+|.-+++|+ .|++.
T Consensus 181 ~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~g-h-esDINsv~ffP~G~afatGS-----DD~tc 253 (343)
T KOG0286|consen 181 VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEG-H-ESDINSVRFFPSGDAFATGS-----DDATC 253 (343)
T ss_pred EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecc-c-ccccceEEEccCCCeeeecC-----CCcee
Confidence 8999999999999999 899999999999999999999999999999 9 99999999999999999999 99999
Q ss_pred EEEEeC-CcEEEEeecC---CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 449 RLHTIN-AQLITSLASE---LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~---~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
++||++ .+.+..+.+. .+|++++|| ..| ++|.+|..|..+.+||.-.++.+..+. +|++.|+++..+|||
T Consensus 254 RlyDlRaD~~~a~ys~~~~~~gitSv~FS--~SG---RlLfagy~d~~c~vWDtlk~e~vg~L~-GHeNRvScl~~s~DG 327 (343)
T KOG0286|consen 254 RLYDLRADQELAVYSHDSIICGITSVAFS--KSG---RLLFAGYDDFTCNVWDTLKGERVGVLA-GHENRVSCLGVSPDG 327 (343)
T ss_pred EEEeecCCcEEeeeccCcccCCceeEEEc--ccc---cEEEeeecCCceeEeeccccceEEEee-ccCCeeEEEEECCCC
Confidence 999999 6777777653 589999999 889 999999999999999999999999998 999999999999999
Q ss_pred CEEEEEcCCCcEEEEE
Q psy10778 525 QHLYASNTEGLVIIWE 540 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vwd 540 (556)
..+++|+.|..++||.
T Consensus 328 ~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 328 MAVATGSWDSTLRIWA 343 (343)
T ss_pred cEEEecchhHheeecC
Confidence 9999999999999994
|
|
| >KOG0279|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8e-30 Score=236.18 Aligned_cols=231 Identities=19% Similarity=0.214 Sum_probs=198.4
Q ss_pred eEEeccCCCeEEEEeCCCC-----CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKEL-----PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-----~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
++..++.|.++.+|++... ..+..+. +|...|..++.++||++.++|+.|+++++||+.++ +..+
T Consensus 30 ~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~-GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g---------~~t~ 99 (315)
T KOG0279|consen 30 ILVSASRDKTIIVWKLTSDDIKYGVPVRRLT-GHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG---------ESTR 99 (315)
T ss_pred eEEEcccceEEEEEEeccCccccCceeeeee-ccceEecceEEccCCceEEeccccceEEEEEecCC---------cEEE
Confidence 7888999999999988643 3344454 89999999999999999999999999999999987 6678
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCCeeEEEEeCC--CCeEEEEeecCcCCCC
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP-NTPVSHVTMSET--NGEIASVLQTTKTGGS 446 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~-~~~V~~l~~sp~--~~~i~s~s~~~~~~d~ 446 (556)
.+.||...|.+++++++.+.++|||.|.+|++|++.. .+..++.. +. ...|+|+.|+|+ ...|++++ .|+
T Consensus 100 ~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g-~ck~t~~~-~~~~~WVscvrfsP~~~~p~Ivs~s-----~Dk 172 (315)
T KOG0279|consen 100 RFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLG-VCKYTIHE-DSHREWVSCVRFSPNESNPIIVSAS-----WDK 172 (315)
T ss_pred EEEecCCceEEEEecCCCceeecCCCcceeeeeeecc-cEEEEEec-CCCcCcEEEEEEcCCCCCcEEEEcc-----CCc
Confidence 9999999999999999999999999999999999884 45555544 21 578999999998 67888888 999
Q ss_pred eEEEEEeCCcEE-EEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 447 ILRLHTINAQLI-TSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 447 ~I~iwdi~g~~i-~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
+|++||+++..+ ..+ .|.+.++.+++| ||| .+.++|+.||.+.+||++.++.+..+. |...|.+++|+|+.
T Consensus 173 tvKvWnl~~~~l~~~~~gh~~~v~t~~vS--pDG---slcasGgkdg~~~LwdL~~~k~lysl~--a~~~v~sl~fspnr 245 (315)
T KOG0279|consen 173 TVKVWNLRNCQLRTTFIGHSGYVNTVTVS--PDG---SLCASGGKDGEAMLWDLNEGKNLYSLE--AFDIVNSLCFSPNR 245 (315)
T ss_pred eEEEEccCCcchhhccccccccEEEEEEC--CCC---CEEecCCCCceEEEEEccCCceeEecc--CCCeEeeEEecCCc
Confidence 999999985444 333 578999999999 999 899999999999999999999999996 78999999999987
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 525 QHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
-.|+.+. +..|+|||+.++..+..+
T Consensus 246 ywL~~at-~~sIkIwdl~~~~~v~~l 270 (315)
T KOG0279|consen 246 YWLCAAT-ATSIKIWDLESKAVVEEL 270 (315)
T ss_pred eeEeecc-CCceEEEeccchhhhhhc
Confidence 6666555 556999999997665443
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.4e-30 Score=232.32 Aligned_cols=233 Identities=20% Similarity=0.298 Sum_probs=199.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|++++-|.+||+|...+|.+...++ ...+.|+.+...|+++.||+|+. ..||+||+.++. ..++.++.+|
T Consensus 12 iLvsA~YDhTIRfWqa~tG~C~rTiq-h~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~n-------p~Pv~t~e~h 82 (311)
T KOG0315|consen 12 ILVSAGYDHTIRFWQALTGICSRTIQ-HPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNN-------PNPVATFEGH 82 (311)
T ss_pred EEEeccCcceeeeeehhcCeEEEEEe-cCccceeeEEEcCCcchhhhccC-CeeEEEEccCCC-------CCceeEEecc
Confidence 89999999999999999999988886 34678999999999999999885 789999999872 1467999999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|+++.|..+|+++++||+||+++|||++.....+.+.. .++|+++..+|+...|+++. .+|.|++||+.
T Consensus 83 ~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~---~spVn~vvlhpnQteLis~d-----qsg~irvWDl~ 154 (311)
T KOG0315|consen 83 TKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQH---NSPVNTVVLHPNQTELISGD-----QSGNIRVWDLG 154 (311)
T ss_pred CCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccC---CCCcceEEecCCcceEEeec-----CCCcEEEEEcc
Confidence 99999999999999999999999999999998776666664 78888888888888888887 67788888763
Q ss_pred Cc--------------------------------------------------EEEEe-ecCCCeEEEEEeeCCCCCcceE
Q psy10778 455 AQ--------------------------------------------------LITSL-ASELRITSVTFSNAPEGVSQNV 483 (556)
Q Consensus 455 g~--------------------------------------------------~i~~~-~~~~~i~~i~~s~~pdg~~~~~ 483 (556)
.. ++..+ .|++.+..+.+| |++ ++
T Consensus 155 ~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lS--Pd~---k~ 229 (311)
T KOG0315|consen 155 ENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLS--PDV---KY 229 (311)
T ss_pred CCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEEC--CCC---cE
Confidence 11 00111 245678888999 999 99
Q ss_pred EEEEeCCCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 484 IVTGHSDGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 484 l~tg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|++++.|.+++||+..+. +....+. +|...+...+||.||++|++|+.|+.+++|++..++++...
T Consensus 230 lat~ssdktv~iwn~~~~~kle~~l~-gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy 296 (311)
T KOG0315|consen 230 LATCSSDKTVKIWNTDDFFKLELVLT-GHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQY 296 (311)
T ss_pred EEeecCCceEEEEecCCceeeEEEee-cCCceEEeeeeccCccEEEecCCCCceeecccccCceeeec
Confidence 999999999999999877 6666676 89999999999999999999999999999999998866544
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.3e-30 Score=243.62 Aligned_cols=240 Identities=16% Similarity=0.190 Sum_probs=214.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.++.|++|++||..++++...++ +|.++|..++|+..|+++|+++.|-.+.+||.... .++++.+.+|
T Consensus 122 ~v~~as~d~tikv~D~~tg~~e~~Lr-GHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~--------~~c~ks~~gh 192 (406)
T KOG0295|consen 122 LVVSASEDATIKVFDTETGELERSLR-GHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF--------FRCIKSLIGH 192 (406)
T ss_pred EEEEecCCceEEEEEccchhhhhhhh-ccccceeEEEEecCccEEEecCCccchhheeHHHH--------HHHHHHhcCc
Confidence 78888999999999999999977776 99999999999999999999999999999998763 1566788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|-|.|..++|++.|.+|+.|++.+|-++.++.+ | ...|+.++.+.||..+++++ .|.+|++|-+.
T Consensus 193 ~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~-h-~ewvr~v~v~~DGti~As~s-----~dqtl~vW~~~ 265 (406)
T KOG0295|consen 193 EHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPG-H-SEWVRMVRVNQDGTIIASCS-----NDQTLRVWVVA 265 (406)
T ss_pred ccceeeEEEEecCCeeeecccccceeEEecccceeEEeccC-c-hHhEEEEEecCCeeEEEecC-----CCceEEEEEec
Confidence 99999999999999999999999999999999999999999 9 88999999999999999999 89999999997
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeC----------CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 455 -AQLITSL-ASELRITSVTFSNA----------PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~----------pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
+++...+ .|+..|.|++|.|. +.+.+..++.+++.|++|++||+.++.++.++. +|...|++++|+|
T Consensus 266 t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~-ghdnwVr~~af~p 344 (406)
T KOG0295|consen 266 TKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLV-GHDNWVRGVAFSP 344 (406)
T ss_pred cchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEe-cccceeeeeEEcC
Confidence 5444444 47788899998741 111112699999999999999999999999998 8999999999999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 523 DSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.|++|+++.+|++++|||++++.+..++.
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ 373 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTLE 373 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeeccC
Confidence 99999999999999999999987766554
|
|
| >KOG0286|consensus | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-28 Score=229.81 Aligned_cols=240 Identities=18% Similarity=0.214 Sum_probs=212.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++++.||.+.|||.-+......+. -....|..++|+|.|+++|+|+-|+...||++.+.... ......+.+.+|
T Consensus 69 ~ivSaSqDGklIvWDs~TtnK~haip-l~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls~~d~~---g~~~v~r~l~gH 144 (343)
T KOG0286|consen 69 RIVSASQDGKLIVWDSFTTNKVHAIP-LPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLSTRDAE---GNVRVSRELAGH 144 (343)
T ss_pred eEEeeccCCeEEEEEcccccceeEEe-cCceeEEEEEECCCCCeEEecCcCceeEEEeccccccc---ccceeeeeecCc
Confidence 78899999999999998876666665 46778999999999999999999999999999854211 122445779999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
++-+.|+.|-.|+ .|+++|.|.++.+||+++++.++.+.+ | .+.|.+++++| +++.+++|+ .|+..++||+
T Consensus 145 tgylScC~f~dD~-~ilT~SGD~TCalWDie~g~~~~~f~G-H-~gDV~slsl~p~~~ntFvSg~-----cD~~aklWD~ 216 (343)
T KOG0286|consen 145 TGYLSCCRFLDDN-HILTGSGDMTCALWDIETGQQTQVFHG-H-TGDVMSLSLSPSDGNTFVSGG-----CDKSAKLWDV 216 (343)
T ss_pred cceeEEEEEcCCC-ceEecCCCceEEEEEcccceEEEEecC-C-cccEEEEecCCCCCCeEEecc-----cccceeeeec
Confidence 9999999998854 689999999999999999999999999 9 99999999999 899999999 8999999999
Q ss_pred C-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEE
Q psy10778 454 N-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 454 ~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sg 530 (556)
+ +..++++. |++.|++++|. |+| .-+++|++|++.++||++..+.+..+.. .-..+|++++||..|++|.+|
T Consensus 217 R~~~c~qtF~ghesDINsv~ff--P~G---~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfag 291 (343)
T KOG0286|consen 217 RSGQCVQTFEGHESDINSVRFF--PSG---DAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAG 291 (343)
T ss_pred cCcceeEeecccccccceEEEc--cCC---CeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEee
Confidence 8 88888884 78999999999 899 8899999999999999999999988874 335789999999999999999
Q ss_pred cCCCcEEEEEcCCCCCcCeee
Q psy10778 531 NTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..|..+.|||.-+++.+..+.
T Consensus 292 y~d~~c~vWDtlk~e~vg~L~ 312 (343)
T KOG0286|consen 292 YDDFTCNVWDTLKGERVGVLA 312 (343)
T ss_pred ecCCceeEeeccccceEEEee
Confidence 999999999998877776654
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=238.28 Aligned_cols=241 Identities=17% Similarity=0.242 Sum_probs=209.9
Q ss_pred cccccCC-cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc----
Q psy10778 286 LNVIGAG-AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN---- 360 (556)
Q Consensus 286 ~~~~~~~-~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~---- 360 (556)
+.+.|+. ..+||+|+.||.+|+|+.... ++..+. .|.++|.++.|+.+|.+|++|+.||++.+||..++....
T Consensus 239 T~L~Wn~~G~~LatG~~~G~~riw~~~G~-l~~tl~-~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~ 316 (524)
T KOG0273|consen 239 TSLDWNNDGTLLATGSEDGEARIWNKDGN-LISTLG-QHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEF 316 (524)
T ss_pred ceEEecCCCCeEEEeecCcEEEEEecCch-hhhhhh-ccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeee
Confidence 3445553 338999999999999998754 444443 699999999999999999999999999999985443110
Q ss_pred ----------------------------cccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE
Q psy10778 361 ----------------------------KIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE 412 (556)
Q Consensus 361 ----------------------------~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~ 412 (556)
+.-..+|+.++.+|.++|.++.|+|.+.+|+|+|.|++++||+.........
T Consensus 317 ~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~ 396 (524)
T KOG0273|consen 317 HSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHD 396 (524)
T ss_pred ccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhh
Confidence 0011168889999999999999999999999999999999999999889999
Q ss_pred eCCCCCCCCeeEEEEeCCC---------CeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcc
Q psy10778 413 IPCVDPNTPVSHVTMSETN---------GEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQ 481 (556)
Q Consensus 413 l~~~h~~~~V~~l~~sp~~---------~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~ 481 (556)
+.. | ...|..+.|+|+| ..+++++ .|++|++||+. |.++..+ +|..+|.+++|+ |+|
T Consensus 397 l~~-H-skei~t~~wsp~g~v~~n~~~~~~l~sas-----~dstV~lwdv~~gv~i~~f~kH~~pVysvafS--~~g--- 464 (524)
T KOG0273|consen 397 LQA-H-SKEIYTIKWSPTGPVTSNPNMNLMLASAS-----FDSTVKLWDVESGVPIHTLMKHQEPVYSVAFS--PNG--- 464 (524)
T ss_pred hhh-h-ccceeeEeecCCCCccCCCcCCceEEEee-----cCCeEEEEEccCCceeEeeccCCCceEEEEec--CCC---
Confidence 999 9 8999999999965 3677877 89999999997 9999988 899999999999 999
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 482 ~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
+++++|+.||.|.+|+..+++.++.+. ..+.|..++|+.+|..|.++-.||.+++-|++
T Consensus 465 ~ylAsGs~dg~V~iws~~~~~l~~s~~--~~~~Ifel~Wn~~G~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 465 RYLASGSLDGCVHIWSTKTGKLVKSYQ--GTGGIFELCWNAAGDKLGACASDGSVCVLDLR 523 (524)
T ss_pred cEEEecCCCCeeEeccccchheeEeec--CCCeEEEEEEcCCCCEEEEEecCCCceEEEec
Confidence 999999999999999999999999998 35779999999999999999999999999985
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.9e-28 Score=231.44 Aligned_cols=231 Identities=17% Similarity=0.239 Sum_probs=211.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++|+.|++++|||+.++++...+. +|...|..+++++-..|+++++.|+.|+.||+..+ +.++...||
T Consensus 165 wf~tgs~DrtikIwDlatg~Lkltlt-Ghi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~n---------kvIR~YhGH 234 (460)
T KOG0285|consen 165 WFATGSADRTIKIWDLATGQLKLTLT-GHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYN---------KVIRHYHGH 234 (460)
T ss_pred eEEecCCCceeEEEEcccCeEEEeec-chhheeeeeeecccCceEEEecCCCeeEEEechhh---------hhHHHhccc
Confidence 89999999999999999999888876 89999999999999999999999999999999987 778899999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
-+.|.|++.+|.-+.|++|+.|.+++|||+++...+..+.+ | ..+|..+.+.|....+++++ .|++|++||++
T Consensus 235 lS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~G-H-~~~V~~V~~~~~dpqvit~S-----~D~tvrlWDl~ 307 (460)
T KOG0285|consen 235 LSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSG-H-TNPVASVMCQPTDPQVITGS-----HDSTVRLWDLR 307 (460)
T ss_pred cceeEEEeccccceeEEecCCcceEEEeeecccceEEEecC-C-CCcceeEEeecCCCceEEec-----CCceEEEeeec
Confidence 99999999999999999999999999999999999999999 9 99999999999999999999 99999999997
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
|+...++ .|...+.+++.+ |.- ..+++++.| .|+-|++..+..+..+. +|..-|.+++...|+ ++++|++
T Consensus 308 agkt~~tlt~hkksvral~lh--P~e---~~fASas~d-nik~w~~p~g~f~~nls-gh~~iintl~~nsD~-v~~~G~d 379 (460)
T KOG0285|consen 308 AGKTMITLTHHKKSVRALCLH--PKE---NLFASASPD-NIKQWKLPEGEFLQNLS-GHNAIINTLSVNSDG-VLVSGGD 379 (460)
T ss_pred cCceeEeeecccceeeEEecC--Cch---hhhhccCCc-cceeccCCccchhhccc-cccceeeeeeeccCc-eEEEcCC
Confidence 7777666 467899999999 766 677777765 68999999999999987 899999999988876 7889999
Q ss_pred CCcEEEEEcCCCCCcCee
Q psy10778 533 EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~ 550 (556)
+|.+..||.+++.+...+
T Consensus 380 ng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 380 NGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred ceEEEEEecCcCcccccc
Confidence 999999999997766554
|
|
| >KOG0273|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.9e-28 Score=238.26 Aligned_cols=237 Identities=20% Similarity=0.271 Sum_probs=199.8
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcce------Ec-----CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccc
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPV------IR-----PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNK 361 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~------~~-----~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~ 361 (556)
+++.|+.|-..|+|++... ..... +. ......|++++|+.+|..||+|+.||.+++|+...
T Consensus 193 llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G------ 266 (524)
T KOG0273|consen 193 LLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWNNDGTLLATGSEDGEARIWNKDG------ 266 (524)
T ss_pred hhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEecCCCCeEEEeecCcEEEEEecCc------
Confidence 8899999999999998641 11110 10 01246899999999999999999999999999876
Q ss_pred ccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE--------------------------------
Q psy10778 362 IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY-------------------------------- 409 (556)
Q Consensus 362 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~-------------------------------- 409 (556)
..+.++..|+++|.++.|+..|.+|++++.||++.+||..+++.
T Consensus 267 ----~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~~~F~ts~td~~i~ 342 (524)
T KOG0273|consen 267 ----NLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQQFEFHSAPALDVDWQSNDEFATSSTDGCIH 342 (524)
T ss_pred ----hhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEEeeeeccCCccceEEecCceEeecCCCceEE
Confidence 35678899999999999999999999999999999999865432
Q ss_pred ---------EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCC
Q psy10778 410 ---------IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEG 478 (556)
Q Consensus 410 ---------v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg 478 (556)
+.++.+ | .++|.++.|+|.+..|++++ .|++++||+.. +.....+ .|...|..+.|+ |.|
T Consensus 343 V~kv~~~~P~~t~~G-H-~g~V~alk~n~tg~LLaS~S-----dD~TlkiWs~~~~~~~~~l~~Hskei~t~~ws--p~g 413 (524)
T KOG0273|consen 343 VCKVGEDRPVKTFIG-H-HGEVNALKWNPTGSLLASCS-----DDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWS--PTG 413 (524)
T ss_pred EEEecCCCcceeeec-c-cCceEEEEECCCCceEEEec-----CCCeeEeeecCCCcchhhhhhhccceeeEeec--CCC
Confidence 234555 7 88999999999999999999 89999999975 5555555 477899999999 544
Q ss_pred Cc------ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 479 VS------QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 479 ~~------~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.. ...+++++.|++|++||+..+.++..+. .|..+|.+++|+|+|+++++|+.||.|.+|+.++++....+.
T Consensus 414 ~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~-kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 414 PVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLM-KHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CccCCCcCCceEEEeecCCeEEEEEccCCceeEeec-cCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 21 1578999999999999999999999998 899999999999999999999999999999999987766553
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.3e-27 Score=253.75 Aligned_cols=236 Identities=22% Similarity=0.339 Sum_probs=205.9
Q ss_pred eEEeccCCCeEEEEeCCCCC--CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELP--ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~--~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+++.++.|+.+++|+....+ ..... .+|...|.+++|+|+++++++|+.|++|+|||+... . ..++++.
T Consensus 173 ~l~~~~~~~~i~~~~~~~~~~~~~~~l-~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~-----~~~~~l~ 243 (456)
T KOG0266|consen 173 ALAAASSDGLIRIWKLEGIKSNLLREL-SGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---G-----RNLKTLK 243 (456)
T ss_pred eEEEccCCCcEEEeecccccchhhccc-cccccceeeeEECCCCcEEEEecCCceEEEeeccCC---C-----eEEEEec
Confidence 68999999999999997666 44444 489999999999999999999999999999999332 1 4568899
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+|...|++++|+|+++++++|+.|++|+|||++++++++.+.. | ...|++++|++++..|++++ .|+.|++||
T Consensus 244 gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~-h-s~~is~~~f~~d~~~l~s~s-----~d~~i~vwd 316 (456)
T KOG0266|consen 244 GHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKG-H-SDGISGLAFSPDGNLLVSAS-----YDGTIRVWD 316 (456)
T ss_pred CCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeec-c-CCceEEEEECCCCCEEEEcC-----CCccEEEEE
Confidence 9999999999999999999999999999999999999999999 9 99999999999999999998 899999999
Q ss_pred eC-Cc--EEEEee-cCC--CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC---CeEEEEEecC
Q psy10778 453 IN-AQ--LITSLA-SEL--RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL---PVIAVTYSCD 523 (556)
Q Consensus 453 i~-g~--~i~~~~-~~~--~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~---~V~~l~~s~d 523 (556)
+. +. ++..+. +.. .+++++|+ |++ .++++++.|+.+++||+..+..+..+. +|.. .+.+...++.
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~~~~~~fs--p~~---~~ll~~~~d~~~~~w~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 390 (456)
T KOG0266|consen 317 LETGSKLCLKLLSGAENSAPVTSVQFS--PNG---KYLLSASLDRTLKLWDLRSGKSVGTYT-GHSNLVRCIFSPTLSTG 390 (456)
T ss_pred CCCCceeeeecccCCCCCCceeEEEEC--CCC---cEEEEecCCCeEEEEEccCCcceeeec-ccCCcceeEecccccCC
Confidence 98 55 234443 222 68999999 999 899999999999999999999999998 5655 4555566889
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 524 SQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
+.++++|+.|+.|.+|++.++..+.++..
T Consensus 391 ~~~i~sg~~d~~v~~~~~~s~~~~~~l~~ 419 (456)
T KOG0266|consen 391 GKLIYSGSEDGSVYVWDSSSGGILQRLEG 419 (456)
T ss_pred CCeEEEEeCCceEEEEeCCccchhhhhcC
Confidence 99999999999999999998776665543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.3e-29 Score=240.59 Aligned_cols=228 Identities=15% Similarity=0.208 Sum_probs=204.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|..+|.|++|+..-.. +..+...|...|++++|+|+...+++++.||+|+|||.... +....+.||
T Consensus 152 wmiSgD~gG~iKyWqpnmnn-Vk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~---------kee~vL~GH 221 (464)
T KOG0284|consen 152 WMISGDKGGMIKYWQPNMNN-VKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMP---------KEERVLRGH 221 (464)
T ss_pred EEEEcCCCceEEecccchhh-hHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCC---------chhheeccC
Confidence 88899999999999986433 33344356699999999999999999999999999998765 455778999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.-.|.+++|+|...++++||+|..|++||.+++.++.++.. | +..|..+.|++++++|++++ +|..++++|++
T Consensus 222 gwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~-H-KntVl~~~f~~n~N~Llt~s-----kD~~~kv~DiR 294 (464)
T KOG0284|consen 222 GWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHG-H-KNTVLAVKFNPNGNWLLTGS-----KDQSCKVFDIR 294 (464)
T ss_pred CCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhh-c-cceEEEEEEcCCCCeeEEcc-----CCceEEEEehh
Confidence 99999999999999999999999999999999999999999 9 99999999999999999999 99999999999
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
-+.+..+ .|...++++.|+|... .++.+|+.||.|..|.+...+++..+..+|...|++++|+|=|.+|++|+.
T Consensus 295 ~mkEl~~~r~Hkkdv~~~~WhP~~~----~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsn 370 (464)
T KOG0284|consen 295 TMKELFTYRGHKKDVTSLTWHPLNE----SLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSN 370 (464)
T ss_pred HhHHHHHhhcchhhheeeccccccc----cceeeccCCCceEEEeccccccccCCCcccccceeeeeccccceeEeecCC
Confidence 4555555 4889999999996545 599999999999999998788888888899999999999999999999999
Q ss_pred CCcEEEEEcCC
Q psy10778 533 EGLVIIWESSS 543 (556)
Q Consensus 533 Dg~V~vwdl~~ 543 (556)
|.+++.|.-.-
T Consensus 371 d~t~rfw~r~r 381 (464)
T KOG0284|consen 371 DRTVRFWTRNR 381 (464)
T ss_pred CcceeeeccCC
Confidence 99999998643
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.4e-29 Score=236.25 Aligned_cols=219 Identities=18% Similarity=0.301 Sum_probs=195.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++|..|++|++||..+..+...+. +|.++|.|+.+. .+.+++|+.|.+|+|||++++ +++.++.+|
T Consensus 209 kiVSGlrDnTikiWD~n~~~c~~~L~-GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tg---------e~l~tlihH 276 (499)
T KOG0281|consen 209 KIVSGLRDNTIKIWDKNSLECLKILT-GHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTG---------EPLNTLIHH 276 (499)
T ss_pred hhhcccccCceEEeccccHHHHHhhh-cCCCcEEeeecc--ceEEEecCCCceEEEEeccCC---------chhhHHhhh
Confidence 67889999999999999877777665 999999999985 469999999999999999998 888999999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe---EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG---YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~---~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
...|..+.|+ ..+++++|+|.++.+||+.+.. ..+.+.+ | ...|+.+.|+ .++|++++ .|.+|++|
T Consensus 277 ceaVLhlrf~--ng~mvtcSkDrsiaVWdm~sps~it~rrVLvG-H-rAaVNvVdfd--~kyIVsAS-----gDRTikvW 345 (499)
T KOG0281|consen 277 CEAVLHLRFS--NGYMVTCSKDRSIAVWDMASPTDITLRRVLVG-H-RAAVNVVDFD--DKYIVSAS-----GDRTIKVW 345 (499)
T ss_pred cceeEEEEEe--CCEEEEecCCceeEEEeccCchHHHHHHHHhh-h-hhheeeeccc--cceEEEec-----CCceEEEE
Confidence 9999999998 4589999999999999998754 2345677 8 8999999997 46999999 89999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++. ++.+.++. |...|.|+.+. | +++++|++|.+|++||+..|.+++.++ ||+.-|+++.|. .+.+++
T Consensus 346 ~~st~efvRtl~gHkRGIAClQYr----~---rlvVSGSSDntIRlwdi~~G~cLRvLe-GHEeLvRciRFd--~krIVS 415 (499)
T KOG0281|consen 346 STSTCEFVRTLNGHKRGIACLQYR----D---RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFD--NKRIVS 415 (499)
T ss_pred eccceeeehhhhcccccceehhcc----C---eEEEecCCCceEEEEeccccHHHHHHh-chHHhhhheeec--Cceeee
Confidence 997 88888884 77889998876 5 899999999999999999999999999 999999999996 678999
Q ss_pred EcCCCcEEEEEcCCCCC
Q psy10778 530 SNTEGLVIIWESSSHNR 546 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~ 546 (556)
|+-||+|+|||+.....
T Consensus 416 GaYDGkikvWdl~aald 432 (499)
T KOG0281|consen 416 GAYDGKIKVWDLQAALD 432 (499)
T ss_pred ccccceEEEEecccccC
Confidence 99999999999988543
|
|
| >KOG0284|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.7e-29 Score=239.31 Aligned_cols=229 Identities=19% Similarity=0.254 Sum_probs=203.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
-|.+|+..|.+.||+..+-... .+..+|.+.|+++.|+++|.++++|+.+|.|++|+...+ -++.+.+|
T Consensus 110 RLltgs~SGEFtLWNg~~fnFE-tilQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmn----------nVk~~~ah 178 (464)
T KOG0284|consen 110 RLLTGSQSGEFTLWNGTSFNFE-TILQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMN----------NVKIIQAH 178 (464)
T ss_pred eeEeecccccEEEecCceeeHH-HHhhhhcccceeEEEccCCCEEEEcCCCceEEecccchh----------hhHHhhHh
Confidence 5778999999999998543222 233389999999999999999999999999999998754 23445555
Q ss_pred C-ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 S-ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~-~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
. ..|++++|+|....++++|+||+|+|||....+..+.+.+ | ...|++++|+|..+.|++++ .|+.|++||.
T Consensus 179 h~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~G-H-gwdVksvdWHP~kgLiasgs-----kDnlVKlWDp 251 (464)
T KOG0284|consen 179 HAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRG-H-GWDVKSVDWHPTKGLIASGS-----KDNLVKLWDP 251 (464)
T ss_pred hhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheecc-C-CCCcceeccCCccceeEEcc-----CCceeEeecC
Confidence 5 8999999999999999999999999999999999999999 9 89999999999999999999 8999999999
Q ss_pred C-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec-CCCEEEEE
Q psy10778 454 N-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC-DSQHLYAS 530 (556)
Q Consensus 454 ~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~sg 530 (556)
+ |.++.++ .|...|..+.|+ +++ ++|++++.|..++++|+++.+.+..+. +|...|++++|+| ...++.+|
T Consensus 252 rSg~cl~tlh~HKntVl~~~f~--~n~---N~Llt~skD~~~kv~DiR~mkEl~~~r-~Hkkdv~~~~WhP~~~~lftsg 325 (464)
T KOG0284|consen 252 RSGSCLATLHGHKNTVLAVKFN--PNG---NWLLTGSKDQSCKVFDIRTMKELFTYR-GHKKDVTSLTWHPLNESLFTSG 325 (464)
T ss_pred CCcchhhhhhhccceEEEEEEc--CCC---CeeEEccCCceEEEEehhHhHHHHHhh-cchhhheeeccccccccceeec
Confidence 8 8888887 578899999999 888 999999999999999999999999998 8999999999999 45788899
Q ss_pred cCCCcEEEEEcCCCCCc
Q psy10778 531 NTEGLVIIWESSSHNRT 547 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~~ 547 (556)
+.||.|..|.+...+.+
T Consensus 326 g~Dgsvvh~~v~~~~p~ 342 (464)
T KOG0284|consen 326 GSDGSVVHWVVGLEEPL 342 (464)
T ss_pred cCCCceEEEeccccccc
Confidence 99999999999854443
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.6e-27 Score=249.20 Aligned_cols=236 Identities=17% Similarity=0.222 Sum_probs=210.1
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++.+.++-..|.|++||..-+.++..+. +|.++|+.++|+|++.++++|+.|-.|+||++... +++-++.
T Consensus 21 rPwILtslHsG~IQlWDYRM~tli~rFd-eHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~r---------rclftL~ 90 (1202)
T KOG0292|consen 21 RPWILTSLHSGVIQLWDYRMGTLIDRFD-EHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTR---------RCLFTLL 90 (1202)
T ss_pred CCEEEEeecCceeeeehhhhhhHHhhhh-ccCCccceeeecCCCCeEEecCCccEEEEEecccc---------eehhhhc
Confidence 3478888899999999999887777776 89999999999999999999999999999999987 7889999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
||-+-|..+.|+++..+|+|+|+|.+|+||+..+++++..+.+ | ..-|.|.+|+|....|++++ -|.+|++||
T Consensus 91 GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltG-H-nHYVMcAqFhptEDlIVSaS-----LDQTVRVWD 163 (1202)
T KOG0292|consen 91 GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTG-H-NHYVMCAQFHPTEDLIVSAS-----LDQTVRVWD 163 (1202)
T ss_pred cccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEec-C-ceEEEeeccCCccceEEEec-----ccceEEEEe
Confidence 9999999999999999999999999999999999999999999 9 99999999999999999999 999999999
Q ss_pred eCCc-----------------------------EEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC
Q psy10778 453 INAQ-----------------------------LITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL 501 (556)
Q Consensus 453 i~g~-----------------------------~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~ 501 (556)
+.|- .+..+ .|...|+-++|+ |.- .++++|+.|..|++|.+...
T Consensus 164 isGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfh--pTl---pliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 164 ISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFH--PTL---PLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred ecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEec--CCc---ceEEecCCcceeeEEEeccc
Confidence 8431 01111 256789999999 766 79999999999999998544
Q ss_pred e--EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 502 A--HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 502 ~--~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+ .+.+.. +|.+.|.++-|+|...++++.++|++|+|||+.++..+.+|+
T Consensus 239 KaWEvDtcr-gH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~v~tfr 289 (1202)
T KOG0292|consen 239 KAWEVDTCR-GHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTSVQTFR 289 (1202)
T ss_pred cceeehhhh-cccCCcceEEecCccceeEecCCCccEEEEecccccceeeee
Confidence 4 234444 899999999999999999999999999999999988777763
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.96 E-value=5.8e-27 Score=241.86 Aligned_cols=235 Identities=19% Similarity=0.278 Sum_probs=205.4
Q ss_pred eEEeccCC-CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECD-NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~D-g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.+|.|+.. |.+-||+..+...+-..+ +|...++|++++|||+++|||+.||.|+|||...+ -+..++..
T Consensus 321 WiA~g~~klgQLlVweWqsEsYVlKQQ-gH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~Sg---------fC~vTFte 390 (893)
T KOG0291|consen 321 WIAFGCSKLGQLLVWEWQSESYVLKQQ-GHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSG---------FCFVTFTE 390 (893)
T ss_pred EEEEcCCccceEEEEEeeccceeeecc-ccccceeeEEECCCCcEEEeccCCCcEEEEeccCc---------eEEEEecc
Confidence 77777665 899999998776554444 89999999999999999999999999999999877 67889999
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|++.|+.+.|+..++.++++|-||+|+.||+.+.+..+++..|. .....|++..|.|..+++|+. ..=.|.+|++
T Consensus 391 Hts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~-p~QfscvavD~sGelV~AG~~----d~F~IfvWS~ 465 (893)
T KOG0291|consen 391 HTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPE-PIQFSCVAVDPSGELVCAGAQ----DSFEIFVWSV 465 (893)
T ss_pred CCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCC-ceeeeEEEEcCCCCEEEeecc----ceEEEEEEEe
Confidence 99999999999999999999999999999999999999998833 566778999999988888873 3346999999
Q ss_pred C-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 454 N-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 454 ~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
. |+++..+ .|+++|.+++|+ |+| ..|++|+.|.+||+||+... ..+.++. +...+.+++|+|+|+.|+++
T Consensus 466 qTGqllDiLsGHEgPVs~l~f~--~~~---~~LaS~SWDkTVRiW~if~s~~~vEtl~--i~sdvl~vsfrPdG~elaVa 538 (893)
T KOG0291|consen 466 QTGQLLDILSGHEGPVSGLSFS--PDG---SLLASGSWDKTVRIWDIFSSSGTVETLE--IRSDVLAVSFRPDGKELAVA 538 (893)
T ss_pred ecCeeeehhcCCCCcceeeEEc--ccc---CeEEeccccceEEEEEeeccCceeeeEe--eccceeEEEEcCCCCeEEEE
Confidence 7 9988888 488999999999 899 89999999999999998654 4566665 56789999999999999999
Q ss_pred cCCCcEEEEEcCCCCCcCeee
Q psy10778 531 NTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+.||.|.+||.+....+..+.
T Consensus 539 TldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 539 TLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred EecceEEEEEhhhceeecccc
Confidence 999999999998866654443
|
|
| >KOG0263|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.5e-27 Score=246.97 Aligned_cols=215 Identities=20% Similarity=0.279 Sum_probs=189.6
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+.+|.++++|+++|+|.+.+...+..+. +|..+|.++.|+|-|-++|||+.|++-++|..+.. .+.+.+.
T Consensus 463 ~rfLlScSED~svRLWsl~t~s~~V~y~-GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~---------~PlRifa 532 (707)
T KOG0263|consen 463 RRFLLSCSEDSSVRLWSLDTWSCLVIYK-GHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHN---------KPLRIFA 532 (707)
T ss_pred ccceeeccCCcceeeeecccceeEEEec-CCCcceeeEEecCCceEEEecCCCceeeeeecccC---------Cchhhhc
Confidence 3489999999999999999988887777 99999999999999999999999999999999876 7889999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
||-+.|.|+.|+|+..++++||.|.+|++||+.+|..+|.+.+ | .++|.++++||+|.+|++|+ .++.|.+||
T Consensus 533 ghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~G-H-~~~V~al~~Sp~Gr~LaSg~-----ed~~I~iWD 605 (707)
T KOG0263|consen 533 GHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTG-H-KGPVTALAFSPCGRYLASGD-----EDGLIKIWD 605 (707)
T ss_pred ccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecC-C-CCceEEEEEcCCCceEeecc-----cCCcEEEEE
Confidence 9999999999999999999999999999999999999999999 9 99999999999999999999 999999999
Q ss_pred eC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe------------------------EEEE
Q psy10778 453 IN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------------------------HLLT 506 (556)
Q Consensus 453 i~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------------------------~~~~ 506 (556)
+. |+++..+ .|.+.|.++.|+ .+| .+||+|+.|.+|++||+.... ++..
T Consensus 606 l~~~~~v~~l~~Ht~ti~SlsFS--~dg---~vLasgg~DnsV~lWD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llgs 680 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTGTIYSLSFS--RDG---NVLASGGADNSVRLWDLTKVIELLNLGHISTSNSAITQENNASSLLLGS 680 (707)
T ss_pred cCCCcchhhhhcccCceeEEEEe--cCC---CEEEecCCCCeEEEEEchhhcccccccccccccccccccCCCCcceeee
Confidence 97 6777666 578999999999 899 999999999999999984322 2333
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+. .-..+|.++.|....-.|++|
T Consensus 681 ~~-tK~tpv~~l~FtrrNl~L~~g 703 (707)
T KOG0263|consen 681 FY-TKNTPVVGLHFTRRNLLLAVG 703 (707)
T ss_pred ee-ecCceEEEEEEeccceeEEec
Confidence 33 234567777777655444443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.2e-25 Score=221.01 Aligned_cols=223 Identities=24% Similarity=0.373 Sum_probs=200.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++++.||.|++|+..+++....+. .|...|.+++|+++++++++++.||.+++|++... +....+..|
T Consensus 65 ~l~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---------~~~~~~~~~ 134 (289)
T cd00200 65 YLASGSSDKTIRLWDLETGECVRTLT-GHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETG---------KCLTTLRGH 134 (289)
T ss_pred EEEEEcCCCeEEEEEcCcccceEEEe-ccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCc---------EEEEEeccC
Confidence 78889999999999999876666665 78889999999999889999888999999999854 445667789
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|+|++.++++++.||.+++||+++++.+..+.. | ...+.+++|+|++..+++++ .++.|++||++
T Consensus 135 ~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-----~~~~i~i~d~~ 207 (289)
T cd00200 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTG-H-TGEVNSVAFSPDGEKLLSSS-----SDGTIKLWDLS 207 (289)
T ss_pred CCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEec-C-ccccceEEECCCcCEEEEec-----CCCcEEEEECC
Confidence 99999999999999999998899999999998888888888 7 78999999999999999998 79999999998
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
++.+..+ .+...+.+++|+ +++ .++++++.+|.|++||+.+++....+. .|...|.+++|++++..|++++.
T Consensus 208 ~~~~~~~~~~~~~~i~~~~~~--~~~---~~~~~~~~~~~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~ 281 (289)
T cd00200 208 TGKCLGTLRGHENGVNSVAFS--PDG---YLLASGSEDGTIRVWDLRTGECVQTLS-GHTNSVTSLAWSPDGKRLASGSA 281 (289)
T ss_pred CCceecchhhcCCceEEEEEc--CCC---cEEEEEcCCCcEEEEEcCCceeEEEcc-ccCCcEEEEEECCCCCEEEEecC
Confidence 7777777 567799999999 777 788888889999999999999988888 78899999999999999999999
Q ss_pred CCcEEEEE
Q psy10778 533 EGLVIIWE 540 (556)
Q Consensus 533 Dg~V~vwd 540 (556)
||.|++|+
T Consensus 282 d~~i~iw~ 289 (289)
T cd00200 282 DGTIRIWD 289 (289)
T ss_pred CCeEEecC
Confidence 99999996
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.7e-27 Score=211.79 Aligned_cols=231 Identities=20% Similarity=0.186 Sum_probs=203.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
|..+++.|.+|++|+...+.++..+. +|...|..++.+.|...+++|+.|..+.+||+.++ +..+.+.+|
T Consensus 31 Y~ltcGsdrtvrLWNp~rg~liktYs-ghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TG---------kv~Rr~rgH 100 (307)
T KOG0316|consen 31 YCLTCGSDRTVRLWNPLRGALIKTYS-GHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTG---------KVDRRFRGH 100 (307)
T ss_pred EEEEcCCCceEEeecccccceeeeec-CCCceeeeccccccccccccCCCCceEEEEEcccC---------eeeeecccc
Confidence 77777899999999999999888886 89999999999999999999999999999999998 677899999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC--eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI--GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~--~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.+.|+.++|+.+...++||+-|.++++||.++. ++++.+.. . ...|.++.++ +..|++|+ .||+++.||
T Consensus 101 ~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQilde-a-~D~V~Si~v~--~heIvaGS-----~DGtvRtyd 171 (307)
T KOG0316|consen 101 LAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDE-A-KDGVSSIDVA--EHEIVAGS-----VDGTVRTYD 171 (307)
T ss_pred cceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhh-h-cCceeEEEec--ccEEEeec-----cCCcEEEEE
Confidence 999999999999999999999999999999864 67788876 5 7789998887 56788888 899999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeE--EEEEecCCCEEEE
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI--AVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~--~l~~s~dg~~l~s 529 (556)
++ |++. .--...+|+|++|+ +++ +..+.++-|+++++.|-.+|+++..+. +|...-. ..+++....++++
T Consensus 172 iR~G~l~-sDy~g~pit~vs~s--~d~---nc~La~~l~stlrLlDk~tGklL~sYk-Ghkn~eykldc~l~qsdthV~s 244 (307)
T KOG0316|consen 172 IRKGTLS-SDYFGHPITSVSFS--KDG---NCSLASSLDSTLRLLDKETGKLLKSYK-GHKNMEYKLDCCLNQSDTHVFS 244 (307)
T ss_pred eecceee-hhhcCCcceeEEec--CCC---CEEEEeeccceeeecccchhHHHHHhc-ccccceeeeeeeecccceeEEe
Confidence 98 5543 33356799999999 999 999999999999999999999999998 7765433 4466777789999
Q ss_pred EcCCCcEEEEEcCCCCCcCeee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|++||.|++||+.+...+.++.
T Consensus 245 gSEDG~Vy~wdLvd~~~~sk~~ 266 (307)
T KOG0316|consen 245 GSEDGKVYFWDLVDETQISKLS 266 (307)
T ss_pred ccCCceEEEEEeccceeeeeec
Confidence 9999999999999977776654
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.8e-26 Score=213.15 Aligned_cols=229 Identities=18% Similarity=0.247 Sum_probs=191.3
Q ss_pred eEEeccCCCeEEEEeCCCCC---CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELP---ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~---~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
+|++++.|+.||+|+..++. +...+.-+|...|++++|+|.|++|++||.|.++.||.-..+ ..+++.++
T Consensus 29 ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~-------efecv~~l 101 (312)
T KOG0645|consen 29 ILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDATVVIWKKEDG-------EFECVATL 101 (312)
T ss_pred EEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccceEEEeecCCC-------ceeEEeee
Confidence 89999999999999998532 233344479999999999999999999999999999986643 22667899
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.||...|.|++|+++|.+||+++.|++|-||.+..+ +.+..+.. | ...|..+.|+|....|++++ .|++|
T Consensus 102 EGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~-H-tqDVK~V~WHPt~dlL~S~S-----YDnTI 174 (312)
T KOG0645|consen 102 EGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQE-H-TQDVKHVIWHPTEDLLFSCS-----YDNTI 174 (312)
T ss_pred eccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeecc-c-cccccEEEEcCCcceeEEec-----cCCeE
Confidence 999999999999999999999999999999998754 46678888 9 99999999999999999999 89999
Q ss_pred EEEEeC-C---cEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------Ce--------------
Q psy10778 449 RLHTIN-A---QLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------LA-------------- 502 (556)
Q Consensus 449 ~iwdi~-g---~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------~~-------------- 502 (556)
++|.-. + .+++++. |...|.+++|. +.| ..|++++.|++|+||...+ ++
T Consensus 175 k~~~~~~dddW~c~~tl~g~~~TVW~~~F~--~~G---~rl~s~sdD~tv~Iw~~~~~~~~~~sr~~Y~v~W~~~~IaS~ 249 (312)
T KOG0645|consen 175 KVYRDEDDDDWECVQTLDGHENTVWSLAFD--NIG---SRLVSCSDDGTVSIWRLYTDLSGMHSRALYDVPWDNGVIASG 249 (312)
T ss_pred EEEeecCCCCeeEEEEecCccceEEEEEec--CCC---ceEEEecCCcceEeeeeccCcchhcccceEeeeecccceEec
Confidence 999875 3 4666664 56799999999 888 8999999999999997311 10
Q ss_pred ---------------------EEEEecCCCCCCeEEEEEecC-CCEEEEEcCCCcEEEEEcC
Q psy10778 503 ---------------------HLLTLNTNVALPVIAVTYSCD-SQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 503 ---------------------~~~~~~~~h~~~V~~l~~s~d-g~~l~sgs~Dg~V~vwdl~ 542 (556)
++......|...|++++|.|. ..+|++|+.||.|++|.+.
T Consensus 250 ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 250 GGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred cCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 000111146778999999995 6889999999999999875
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-26 Score=226.82 Aligned_cols=239 Identities=16% Similarity=0.188 Sum_probs=200.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-- 372 (556)
-+++|++|++|.++.-.--+...... .|..-|.|+.|+|||.++++++.||++.+||-.++ +.+..+.
T Consensus 162 Ri~T~sdDn~v~ffeGPPFKFk~s~r-~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg---------e~vg~l~~~ 231 (603)
T KOG0318|consen 162 RIATGSDDNTVAFFEGPPFKFKSSFR-EHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG---------EKVGELEDS 231 (603)
T ss_pred EEEeccCCCeEEEeeCCCeeeeeccc-ccccceeeEEECCCCCeEEEecCCccEEEEcCCCc---------cEEEEecCC
Confidence 58899999999999754433344443 68899999999999999999999999999998887 4556665
Q ss_pred -CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE---------------------------------------
Q psy10778 373 -GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE--------------------------------------- 412 (556)
Q Consensus 373 -~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~--------------------------------------- 412 (556)
+|++.|.+++|+||++.++|+|.|.+++|||+.+.+++++
T Consensus 232 ~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~ 311 (603)
T KOG0318|consen 232 DAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPS 311 (603)
T ss_pred CCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCC
Confidence 8999999999999999999999999999999987654433
Q ss_pred ----eCCCCCCCCeeEEEEeCCCCeEEEEeecC-----------------------------------------------
Q psy10778 413 ----IPCVDPNTPVSHVTMSETNGEIASVLQTT----------------------------------------------- 441 (556)
Q Consensus 413 ----l~~~h~~~~V~~l~~sp~~~~i~s~s~~~----------------------------------------------- 441 (556)
+.+ | ...|++++.++++.+|++++.++
T Consensus 312 ~~~~i~G-H-nK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~ 389 (603)
T KOG0318|consen 312 VLKVISG-H-NKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVI 389 (603)
T ss_pred hhheecc-c-ccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEE
Confidence 333 7 78899999999999999999877
Q ss_pred -----------------------------------------------------------------------cCCCCeEEE
Q psy10778 442 -----------------------------------------------------------------------KTGGSILRL 450 (556)
Q Consensus 442 -----------------------------------------------------------------------~~~d~~I~i 450 (556)
++.|+.|++
T Consensus 390 ~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhv 469 (603)
T KOG0318|consen 390 SLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHV 469 (603)
T ss_pred ecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEE
Confidence 347888999
Q ss_pred EEeCCcE----EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE
Q psy10778 451 HTINAQL----ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526 (556)
Q Consensus 451 wdi~g~~----i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 526 (556)
|.++|.. .....|...|+++++| |++ .+|++|...+++.+||+.+.+.......-|...|.+++|+|+..+
T Consensus 470 ysl~g~~l~ee~~~~~h~a~iT~vayS--pd~---~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~ 544 (603)
T KOG0318|consen 470 YSLSGDELKEEAKLLEHRAAITDVAYS--PDG---AYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKL 544 (603)
T ss_pred EEecCCcccceeeeecccCCceEEEEC--CCC---cEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceE
Confidence 9888532 2334688999999999 999 899999999999999998887633333258999999999999999
Q ss_pred EEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 527 LYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 527 l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
+++|+-|-+|.||+++...+.-++
T Consensus 545 vATGSlDt~Viiysv~kP~~~i~i 568 (603)
T KOG0318|consen 545 VATGSLDTNVIIYSVKKPAKHIII 568 (603)
T ss_pred EEeccccceEEEEEccChhhheEe
Confidence 999999999999999886554333
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=9e-27 Score=240.36 Aligned_cols=236 Identities=13% Similarity=0.171 Sum_probs=206.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce---EcCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV---IRPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~---~~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++++|+.|+++++|.++++..... ...+|...|.+++++..+ .+|+++|.|+++++|++.....+..+.......+
T Consensus 379 llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t 458 (775)
T KOG0319|consen 379 LLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYT 458 (775)
T ss_pred EEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHH
Confidence 899999999999998854322211 123799999999997654 5899999999999999987433332222233345
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
...|...|+|++++|+.++++|||.|.+++||++.+++...++.+ | ...|.++.|++..+.+++++ .|.+|+|
T Consensus 459 ~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsG-H-~RGvw~V~Fs~~dq~laT~S-----gD~TvKI 531 (775)
T KOG0319|consen 459 ERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSG-H-TRGVWCVSFSKNDQLLATCS-----GDKTVKI 531 (775)
T ss_pred HHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeC-C-ccceEEEEeccccceeEecc-----CCceEEE
Confidence 578999999999999999999999999999999999999999999 9 99999999999999999999 8999999
Q ss_pred EEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEE
Q psy10778 451 HTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 451 wdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 528 (556)
|.+. ..+++++. |...|..+.|- .+| ..|++++.||.|++|++.+..++.++. .|...|++++.++.+..++
T Consensus 532 W~is~fSClkT~eGH~~aVlra~F~--~~~---~qliS~~adGliKlWnikt~eC~~tlD-~H~DrvWaL~~~~~~~~~~ 605 (775)
T KOG0319|consen 532 WSISTFSCLKTFEGHTSAVLRASFI--RNG---KQLISAGADGLIKLWNIKTNECEMTLD-AHNDRVWALSVSPLLDMFV 605 (775)
T ss_pred EEeccceeeeeecCccceeEeeeee--eCC---cEEEeccCCCcEEEEeccchhhhhhhh-hccceeEEEeecCccceeE
Confidence 9997 89999997 88999999999 788 899999999999999999999999998 8999999999999999999
Q ss_pred EEcCCCcEEEEEcCC
Q psy10778 529 ASNTEGLVIIWESSS 543 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~ 543 (556)
+|+.||.|.+|.=-+
T Consensus 606 tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 606 TGGGDGRIIFWKDVT 620 (775)
T ss_pred ecCCCeEEEEeecCc
Confidence 999999999997544
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.6e-27 Score=216.09 Aligned_cols=227 Identities=17% Similarity=0.249 Sum_probs=205.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
..|+++.|-+-++||.-++..+..+ .|..-|.+++|+.|.++|+||+.+..+||||++... .+...+.+|
T Consensus 73 ~aasaaadftakvw~a~tgdelhsf--~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~--------App~E~~gh 142 (334)
T KOG0278|consen 73 RAASAAADFTAKVWDAVTGDELHSF--EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK--------APPKEISGH 142 (334)
T ss_pred hhhhhcccchhhhhhhhhhhhhhhh--hhhheeeeEEecccchhhhccchHHHhhhhhccCCC--------CCchhhcCC
Confidence 4567889999999999998877776 588899999999999999999999999999998652 455778999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.|..+.|+...+.|+|++.|++|++||.++++.++++.. ..+|+++.++++|.+|.++ ..+.|..||.+
T Consensus 143 tg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~---~s~VtSlEvs~dG~ilTia------~gssV~Fwdak 213 (334)
T KOG0278|consen 143 TGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEF---NSPVTSLEVSQDGRILTIA------YGSSVKFWDAK 213 (334)
T ss_pred CCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEec---CCCCcceeeccCCCEEEEe------cCceeEEeccc
Confidence 99999999999999999999999999999999999999998 7899999999998877766 68899999998
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 -AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
-.++.+.+.+-.|.+..++ |+. .++++|+.|+.++.||..+++.+..+..+|.++|.|+.|+|+|...++|++|
T Consensus 214 sf~~lKs~k~P~nV~SASL~--P~k---~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSED 288 (334)
T KOG0278|consen 214 SFGLLKSYKMPCNVESASLH--PKK---EFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSED 288 (334)
T ss_pred cccceeeccCcccccccccc--CCC---ceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCC
Confidence 6788888888999999999 777 7999999999999999999999888744899999999999999999999999
Q ss_pred CcEEEEEcCCCC
Q psy10778 534 GLVIIWESSSHN 545 (556)
Q Consensus 534 g~V~vwdl~~~~ 545 (556)
|+|++|...-++
T Consensus 289 GTirlWQt~~~~ 300 (334)
T KOG0278|consen 289 GTIRLWQTTPGK 300 (334)
T ss_pred ceEEEEEecCCC
Confidence 999999986543
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-26 Score=235.13 Aligned_cols=231 Identities=16% Similarity=0.196 Sum_probs=208.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..+--.|.|.+|+.++...+..+. -..-+|+++.|-+..+++++|+.|..|+||++.+. +.+..+.+|
T Consensus 27 w~la~LynG~V~IWnyetqtmVksfe-V~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~---------ekV~~FeAH 96 (794)
T KOG0276|consen 27 WILAALYNGDVQIWNYETQTMVKSFE-VSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTG---------EKVKTFEAH 96 (794)
T ss_pred eEEEeeecCeeEEEecccceeeeeee-ecccchhhheeeeccceEEEecCCceEEEEecccc---------eeeEEeecc
Confidence 66677789999999999988888876 45678999999999999999999999999999988 778999999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.+-|.|++.+|...+++|+|+|-+|++||.... .+.+++++ | ..-|.+++|+| |.+.+|+++ -|++|++|.
T Consensus 97 ~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeG-H-~HyVMqv~fnPkD~ntFaS~s-----LDrTVKVWs 169 (794)
T KOG0276|consen 97 SDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEG-H-EHYVMQVAFNPKDPNTFASAS-----LDRTVKVWS 169 (794)
T ss_pred ccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcC-c-ceEEEEEEecCCCccceeeee-----ccccEEEEE
Confidence 999999999999999999999999999999864 67789999 9 99999999999 467899999 999999999
Q ss_pred eC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 453 IN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 453 i~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+. ..+..++ .|...|+|+++.+.+|. .+|++|+.|.+|++||..+..+++++. ||...|..+.|+|.-..+++|
T Consensus 170 lgs~~~nfTl~gHekGVN~Vdyy~~gdk---pylIsgaDD~tiKvWDyQtk~CV~TLe-GHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 170 LGSPHPNFTLEGHEKGVNCVDYYTGGDK---PYLISGADDLTIKVWDYQTKSCVQTLE-GHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred cCCCCCceeeeccccCcceEEeccCCCc---ceEEecCCCceEEEeecchHHHHHHhh-cccccceEEEecCCCcEEEEe
Confidence 96 4555555 57899999999965555 799999999999999999999999999 999999999999999999999
Q ss_pred cCCCcEEEEEcCCCCC
Q psy10778 531 NTEGLVIIWESSSHNR 546 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~ 546 (556)
++||+++||+-.+-+.
T Consensus 246 sEDGTvriWhs~Ty~l 261 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKL 261 (794)
T ss_pred cCCccEEEecCcceeh
Confidence 9999999999888443
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.5e-25 Score=216.86 Aligned_cols=233 Identities=21% Similarity=0.299 Sum_probs=204.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.+++|+..+++...... .|...+.++.|+++++.+++++.||.|++|++..+ +....+..|
T Consensus 23 ~l~~~~~~g~i~i~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~---------~~~~~~~~~ 92 (289)
T cd00200 23 LLATGSGDGTIKVWDLETGELLRTLK-GHTGPVRDVAASADGTYLASGSSDKTIRLWDLETG---------ECVRTLTGH 92 (289)
T ss_pred EEEEeecCcEEEEEEeeCCCcEEEEe-cCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCcc---------cceEEEecc
Confidence 78888899999999998876555554 78889999999999999999999999999999865 456778899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...+.++.|+++++++++++.||.+.+||+.+++....+.. | ...+.+++++|++..+++++ .++.|++||++
T Consensus 93 ~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-----~~~~i~i~d~~ 165 (289)
T cd00200 93 TSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRG-H-TDWVNSVAFSPDGTFVASSS-----QDGTIKLWDLR 165 (289)
T ss_pred CCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEecc-C-CCcEEEEEEcCcCCEEEEEc-----CCCcEEEEEcc
Confidence 99999999999988999999899999999998888888887 8 88999999999988888876 69999999998
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
++.+..+. +...+.+++|+ +++ +.+++++.+|.|++||+..++.+..+. .|...+.+++|++++.++++++.
T Consensus 166 ~~~~~~~~~~~~~~i~~~~~~--~~~---~~l~~~~~~~~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~ 239 (289)
T cd00200 166 TGKCVATLTGHTGEVNSVAFS--PDG---EKLLSSSSDGTIKLWDLSTGKCLGTLR-GHENGVNSVAFSPDGYLLASGSE 239 (289)
T ss_pred ccccceeEecCccccceEEEC--CCc---CEEEEecCCCcEEEEECCCCceecchh-hcCCceEEEEEcCCCcEEEEEcC
Confidence 66666664 55689999999 888 789999999999999999999888886 67889999999999999998888
Q ss_pred CCcEEEEEcCCCCCcCee
Q psy10778 533 EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~ 550 (556)
||.|++|++.+++....+
T Consensus 240 ~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 240 DGTIRVWDLRTGECVQTL 257 (289)
T ss_pred CCcEEEEEcCCceeEEEc
Confidence 999999999875554443
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-25 Score=211.48 Aligned_cols=224 Identities=13% Similarity=0.169 Sum_probs=193.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|..-.||+..+++....+. +|.++|+|+.|+.+|.+||||+.+|.|+||+..++ .....+..-
T Consensus 78 l~aTGGgDD~AflW~~~~ge~~~elt-gHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg---------~~~~~~~~e 147 (399)
T KOG0296|consen 78 LVATGGGDDLAFLWDISTGEFAGELT-GHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTG---------GEQWKLDQE 147 (399)
T ss_pred eEEecCCCceEEEEEccCCcceeEec-CCCCceEEEEEccCceEEEecCCCccEEEEEcccC---------ceEEEeecc
Confidence 99999999999999999998766665 99999999999999999999999999999999887 333555555
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
-..+.=+.|+|.+.+|+.|+.||.+-+|.+.++...+.+.+ | ..++++=.|.|+|++++++. .|++|++|+..
T Consensus 148 ~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~G-h-~~~ct~G~f~pdGKr~~tgy-----~dgti~~Wn~k 220 (399)
T KOG0296|consen 148 VEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSG-H-NSPCTCGEFIPDGKRILTGY-----DDGTIIVWNPK 220 (399)
T ss_pred cCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecC-C-CCCcccccccCCCceEEEEe-----cCceEEEEecC
Confidence 66777889999999999999999999999999888899999 9 99999999999999999998 56666666653
Q ss_pred -CcEE---------------------------------------------------------------------------
Q psy10778 455 -AQLI--------------------------------------------------------------------------- 458 (556)
Q Consensus 455 -g~~i--------------------------------------------------------------------------- 458 (556)
|+++
T Consensus 221 tg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL 300 (399)
T KOG0296|consen 221 TGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPL 300 (399)
T ss_pred CCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccch
Confidence 3222
Q ss_pred ---------------------EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEE
Q psy10778 459 ---------------------TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIA 517 (556)
Q Consensus 459 ---------------------~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 517 (556)
....|+..|+.+.|. + . .+|++++.+|.|+.||.++|+++.++. +|..+|.+
T Consensus 301 ~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~--~-t---~~l~t~c~~g~v~~wDaRtG~l~~~y~-GH~~~Il~ 373 (399)
T KOG0296|consen 301 AACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWL--N-T---DYLLTACANGKVRQWDARTGQLKFTYT-GHQMGILD 373 (399)
T ss_pred hhcccccceEEEEecccchhheeccCCCceEEEEEc--C-c---chheeeccCceEEeeeccccceEEEEe-cCchheeE
Confidence 222334455555665 3 2 689999999999999999999999998 99999999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 518 VTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
++++|+++++++++.|+..+|++++
T Consensus 374 f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 374 FALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEEcCCCcEEEEecCCCeEEEEecC
Confidence 9999999999999999999999875
|
|
| >KOG0291|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=228.38 Aligned_cols=227 Identities=19% Similarity=0.238 Sum_probs=203.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS-GNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D-g~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|++|...|...++.+.+-.++..+.. ....|..++|+..|.+||.|+.. |.+-||++... ..+...++
T Consensus 279 ~lvvgFssG~f~LyelP~f~lih~LSi-s~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsE---------sYVlKQQg 348 (893)
T KOG0291|consen 279 LLVVGFSSGEFGLYELPDFNLIHSLSI-SDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSE---------SYVLKQQG 348 (893)
T ss_pred EEEEEecCCeeEEEecCCceEEEEeec-ccceeeEEEecccCCEEEEcCCccceEEEEEeecc---------ceeeeccc
Confidence 899999999999999988777666653 34679999999999999999754 89999999876 45567789
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|...+++++++|||+++++|++||.|+|||..++-+..++.. | .+.|+.+.|+..++.+++.+ -||+|+.||+
T Consensus 349 H~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFte-H-ts~Vt~v~f~~~g~~llssS-----LDGtVRAwDl 421 (893)
T KOG0291|consen 349 HSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTE-H-TSGVTAVQFTARGNVLLSSS-----LDGTVRAWDL 421 (893)
T ss_pred cccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEecc-C-CCceEEEEEEecCCEEEEee-----cCCeEEeeee
Confidence 999999999999999999999999999999999999999999 9 99999999999999999999 9999999999
Q ss_pred C-CcEEEEeecCCCe--EEEEEeeCCCCCcceEEEEEeCCC-eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 454 N-AQLITSLASELRI--TSVTFSNAPEGVSQNVIVTGHSDG-TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 454 ~-g~~i~~~~~~~~i--~~i~~s~~pdg~~~~~l~tg~~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
. .+..+++..+.++ .|++.. |.| .++..|+.|. .|.+|++.+|+++..+. ||+++|.+++|+|++..|++
T Consensus 422 kRYrNfRTft~P~p~QfscvavD--~sG---elV~AG~~d~F~IfvWS~qTGqllDiLs-GHEgPVs~l~f~~~~~~LaS 495 (893)
T KOG0291|consen 422 KRYRNFRTFTSPEPIQFSCVAVD--PSG---ELVCAGAQDSFEIFVWSVQTGQLLDILS-GHEGPVSGLSFSPDGSLLAS 495 (893)
T ss_pred cccceeeeecCCCceeeeEEEEc--CCC---CEEEeeccceEEEEEEEeecCeeeehhc-CCCCcceeeEEccccCeEEe
Confidence 6 8888888776655 555555 888 7888888775 69999999999999998 99999999999999999999
Q ss_pred EcCCCcEEEEEcCCC
Q psy10778 530 SNTEGLVIIWESSSH 544 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~ 544 (556)
++.|.+|++||+-..
T Consensus 496 ~SWDkTVRiW~if~s 510 (893)
T KOG0291|consen 496 GSWDKTVRIWDIFSS 510 (893)
T ss_pred ccccceEEEEEeecc
Confidence 999999999998664
|
|
| >KOG1786|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.5e-28 Score=278.29 Aligned_cols=131 Identities=66% Similarity=1.172 Sum_probs=127.4
Q ss_pred CCCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCcc
Q psy10778 6 GGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADI 85 (556)
Q Consensus 6 ~~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~~ 85 (556)
+.....|||||+||||++.|++|++|+.||+.+++.+|+|.||.|||.|++++.+|..++.++++|+|||+| |||+||+
T Consensus 951 ~~e~~~~~~~~~~~s~~~~~~~~~~r~~p~~~~~~~~~~~~~~~~dr~f~~l~~~~~~~~~~s~td~kel~p-~f~~pe~ 1029 (1081)
T KOG1786|consen 951 ESEDTEPYHYGSHYSNSGTVSHFLIRLPPFTEMFLSLQDGRFDFPDRLFHSLETAWSLASIESSTDVKELIP-FFYLPEF 1029 (1081)
T ss_pred hhhccCCccccccccCccccccccccCCchHHHHHHhccCcCCCcccccccccccccccccccccchhhccc-cccCcce
Confidence 344568999999999999999999999999999999999999999999999999999999999999999999 9999999
Q ss_pred eecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEE
Q psy10778 86 LVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWID 140 (556)
Q Consensus 86 ~~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~wid 140 (556)
+.|.|+++||.+|+|++|+||.+ ..+|+.||++||+||||+||+.++|+|||
T Consensus 1030 l~n~~~~d~g~~qn~~~~~~~~~---~~~~~~~i~~hr~al~s~~v~~~~~~~i~ 1081 (1081)
T KOG1786|consen 1030 LRNRNGFDFGERQNGERVNDVVL---RGDPRSFILIHRQALESEYVSSNLHTWID 1081 (1081)
T ss_pred eecCCccccCcccCCCcccceee---ccchHHHHHHHHHhhhcccccccceeccC
Confidence 99999999999999999999999 89999999999999999999999999998
|
|
| >KOG0319|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.8e-26 Score=233.89 Aligned_cols=239 Identities=17% Similarity=0.222 Sum_probs=206.2
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.+++.+++.+.+|+++..+..+. +..+|.+.|.+++...+|.+|+||+.|.++++|.++.+..+. .++....+
T Consensus 337 ~~laVATNs~~lr~y~~~~~~c~--ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~-----~~~a~~~g 409 (775)
T KOG0319|consen 337 SHLAVATNSPELRLYTLPTSYCQ--IIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKS-----LCVAQANG 409 (775)
T ss_pred ceEEEEeCCCceEEEecCCCceE--EEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchh-----hhhhhhcc
Confidence 38999999999999988765444 444999999999977788999999999999999995442111 45577889
Q ss_pred CCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeE-----EE----EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 374 HSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGY-----IR----EIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 374 h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~-----v~----~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
|.+.|.+++++..+ ..++++|.|+++++|++...+. +. +... | +..|++++++|+.+.||+|+
T Consensus 410 H~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~a-H-dKdIN~Vaia~ndkLiAT~S----- 482 (775)
T KOG0319|consen 410 HTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERA-H-DKDINCVAIAPNDKLIATGS----- 482 (775)
T ss_pred cccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHh-h-cccccceEecCCCceEEecc-----
Confidence 99999999998765 4899999999999999986221 11 2234 8 88999999999999999999
Q ss_pred CCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 444 GGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
.|.+.++|++. ..+..++. |...+.|+.|+ +.. ++++|++.|++|+||.+.+..+++++. ||...|..+.|-
T Consensus 483 qDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs--~~d---q~laT~SgD~TvKIW~is~fSClkT~e-GH~~aVlra~F~ 556 (775)
T KOG0319|consen 483 QDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFS--KND---QLLATCSGDKTVKIWSISTFSCLKTFE-GHTSAVLRASFI 556 (775)
T ss_pred cccceeeecccCceEEEEeeCCccceEEEEec--ccc---ceeEeccCCceEEEEEeccceeeeeec-CccceeEeeeee
Confidence 99999999997 77777774 78899999999 666 799999999999999999999999999 999999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
.+|+.|+++++||.+++|++++.++..++..
T Consensus 557 ~~~~qliS~~adGliKlWnikt~eC~~tlD~ 587 (775)
T KOG0319|consen 557 RNGKQLISAGADGLIKLWNIKTNECEMTLDA 587 (775)
T ss_pred eCCcEEEeccCCCcEEEEeccchhhhhhhhh
Confidence 9999999999999999999999888877654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.9e-24 Score=229.22 Aligned_cols=236 Identities=17% Similarity=0.249 Sum_probs=182.1
Q ss_pred eccCCCeEEEEeCCCCCCcc---eEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 298 WNECDNLIRLKMSKELPATP---VIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~~---~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
|....|...++..+.++... .+ .+|.+.|++++|+| ++++|++|+.||+|++|++........ ...++..+.+
T Consensus 47 w~~~gg~~v~~~~~~G~~~~~~~~l-~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~--~~~~l~~L~g 123 (493)
T PTZ00421 47 WQQLGSTAVLKHTDYGKLASNPPIL-LGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQN--ISDPIVHLQG 123 (493)
T ss_pred EecCCceEEeeccccccCCCCCceE-eCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccc--cCcceEEecC
Confidence 33333445555544454332 33 38999999999999 889999999999999999976421111 1145678899
Q ss_pred CCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
|...|.+++|+|++ .+|++|+.|++|+|||+.+++.+..+.. | ...|.+++|+|++..|++++ .|+.|++||
T Consensus 124 H~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~-h-~~~V~sla~spdG~lLatgs-----~Dg~IrIwD 196 (493)
T PTZ00421 124 HTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKC-H-SDQITSLEWNLDGSLLCTTS-----KDKKLNIID 196 (493)
T ss_pred CCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcC-C-CCceEEEEEECCCCEEEEec-----CCCEEEEEE
Confidence 99999999999985 6999999999999999999999999998 8 89999999999999999999 899999999
Q ss_pred eC-CcEEEEee-cCC-CeEEEEEeeCCCCCcceEEEEEe----CCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCC
Q psy10778 453 IN-AQLITSLA-SEL-RITSVTFSNAPEGVSQNVIVTGH----SDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 453 i~-g~~i~~~~-~~~-~i~~i~~s~~pdg~~~~~l~tg~----~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg 524 (556)
++ ++.+..+. |.+ ....+.|. +++ ..+++++ .|+.|++||+++.. .+..........+....|++++
T Consensus 197 ~rsg~~v~tl~~H~~~~~~~~~w~--~~~---~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~ 271 (493)
T PTZ00421 197 PRDGTIVSSVEAHASAKSQRCLWA--KRK---DLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDT 271 (493)
T ss_pred CCCCcEEEEEecCCCCcceEEEEc--CCC---CeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCC
Confidence 98 77777664 333 34567788 665 4555543 47999999998754 4444432334556677899999
Q ss_pred CEEEEEc-CCCcEEEEEcCCCCCcC
Q psy10778 525 QHLYASN-TEGLVIIWESSSHNRTP 548 (556)
Q Consensus 525 ~~l~sgs-~Dg~V~vwdl~~~~~~~ 548 (556)
..|++++ .||.|++||+.+++...
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTF 296 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEE
Confidence 9999887 59999999999876443
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.4e-25 Score=209.59 Aligned_cols=225 Identities=15% Similarity=0.197 Sum_probs=196.0
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH--TLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~--~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
+++++|+.|-+|+|||.........+. .|.+.|+++.|.+.-. .|++|+.||.|.+|+...- ..+..+
T Consensus 54 ~~~aSGssDetI~IYDm~k~~qlg~ll-~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---------~~~~sl 123 (362)
T KOG0294|consen 54 PYVASGSSDETIHIYDMRKRKQLGILL-SHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---------ELLKSL 123 (362)
T ss_pred eeEeccCCCCcEEEEeccchhhhccee-ccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---------EEeeee
Confidence 399999999999999999877776665 7999999999998754 8999999999999998765 677999
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
++|.+.|+.++++|.+++.++.+.|+.++.||+.+|+.-..++. ....+.+.|+|.|.+++.+. ...|-+|
T Consensus 124 K~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L---~~~at~v~w~~~Gd~F~v~~------~~~i~i~ 194 (362)
T KOG0294|consen 124 KAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNL---KNKATLVSWSPQGDHFVVSG------RNKIDIY 194 (362)
T ss_pred cccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeecc---CCcceeeEEcCCCCEEEEEe------ccEEEEE
Confidence 99999999999999999999999999999999999987666655 44556699999999998886 5688999
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE--ecCCCEEE
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY--SCDSQHLY 528 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~ 528 (556)
.+. ..+...+..+..+.|+.|. ++ ..|++|.+|+.|++||..+..++..+. +|..+|.++.+ .|++.+|+
T Consensus 195 q~d~A~v~~~i~~~~r~l~~~~l---~~---~~L~vG~d~~~i~~~D~ds~~~~~~~~-AH~~RVK~i~~~~~~~~~~lv 267 (362)
T KOG0294|consen 195 QLDNASVFREIENPKRILCATFL---DG---SELLVGGDNEWISLKDTDSDTPLTEFL-AHENRVKDIASYTNPEHEYLV 267 (362)
T ss_pred ecccHhHhhhhhccccceeeeec---CC---ceEEEecCCceEEEeccCCCccceeee-cchhheeeeEEEecCCceEEE
Confidence 986 5565666566778888887 44 699999999999999999999999998 89999999984 45678999
Q ss_pred EEcCCCcEEEEEcCCC
Q psy10778 529 ASNTEGLVIIWESSSH 544 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~ 544 (556)
++++||.|+|||++..
T Consensus 268 TaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 268 TASSDGFIKVWDIDME 283 (362)
T ss_pred EeccCceEEEEEcccc
Confidence 9999999999999875
|
|
| >KOG0266|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=4e-25 Score=234.73 Aligned_cols=210 Identities=22% Similarity=0.346 Sum_probs=186.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.+...|+|+.|+++|+.+++++.|+.+++|+...... .....+.+|...|.+++|+|+++++++++.|++++|
T Consensus 157 ~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~-------~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiri 229 (456)
T KOG0266|consen 157 HECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS-------NLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRI 229 (456)
T ss_pred cccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc-------hhhccccccccceeeeEECCCCcEEEEecCCceEEE
Confidence 3478899999999999999999999999999965411 144666899999999999999999999999999999
Q ss_pred EeC-CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCC
Q psy10778 402 WDI-NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEG 478 (556)
Q Consensus 402 wdl-~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg 478 (556)
||+ ..+..++++.+ | ...|++++|+|+++.+++|+ .|++|++||++ ++++..+. |.+.|++++|+ +++
T Consensus 230 wd~~~~~~~~~~l~g-H-~~~v~~~~f~p~g~~i~Sgs-----~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~--~d~ 300 (456)
T KOG0266|consen 230 WDLKDDGRNLKTLKG-H-STYVTSVAFSPDGNLLVSGS-----DDGTVRIWDVRTGECVRKLKGHSDGISGLAFS--PDG 300 (456)
T ss_pred eeccCCCeEEEEecC-C-CCceEEEEecCCCCEEEEec-----CCCcEEEEeccCCeEEEeeeccCCceEEEEEC--CCC
Confidence 999 55688999999 9 99999999999999999999 89999999998 78888885 77899999999 899
Q ss_pred CcceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCC--CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 479 VSQNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVAL--PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 479 ~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~--~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
++|++++.||.|++||+.++. ++..+. ++.. ++++++|+|++.++++++.|+.+++||+........+.
T Consensus 301 ---~~l~s~s~d~~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~ 373 (456)
T KOG0266|consen 301 ---NLLVSASYDGTIRVWDLETGSKLCLKLLS-GAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYT 373 (456)
T ss_pred ---CEEEEcCCCccEEEEECCCCceeeeeccc-CCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeec
Confidence 899999999999999999998 566766 4433 59999999999999999999999999999866554443
|
|
| >KOG0295|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.8e-26 Score=215.81 Aligned_cols=225 Identities=16% Similarity=0.207 Sum_probs=204.6
Q ss_pred ceEEeccCCCeEEEEeCCCC-CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKEL-PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~-~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++++++.|-.+.+||.++. +..... .+|...|.+++|-|.|.++++++.|.+|+.|++.++ -++.++.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~-~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg---------~cv~t~~ 232 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSL-IGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG---------YCVKTFP 232 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHh-cCcccceeeEEEEecCCeeeecccccceeEEecccc---------eeEEecc
Confidence 48999999999999999763 222232 389999999999999999999999999999999998 7889999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC---------------CCeEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET---------------NGEIASV 437 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~---------------~~~i~s~ 437 (556)
+|...|..++.+.||.++++++.|.++++|-+.++++...+.. | ..+|.+++|.|. +..++++
T Consensus 233 ~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~-h-Eh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~ 310 (406)
T KOG0295|consen 233 GHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELRE-H-EHPVECIAWAPESSYPSISEATGSTNGGQVLGSG 310 (406)
T ss_pred CchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhc-c-ccceEEEEecccccCcchhhccCCCCCccEEEee
Confidence 9999999999999999999999999999999999988888888 8 899999999763 2367777
Q ss_pred eecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCe
Q psy10778 438 LQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPV 515 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V 515 (556)
+ .|++|++||+. |.++.++ .|...|..++|+ |.| ++|+++.+|+++++||+.++++...+. .|+.-|
T Consensus 311 S-----rDktIk~wdv~tg~cL~tL~ghdnwVr~~af~--p~G---kyi~ScaDDktlrvwdl~~~~cmk~~~-ah~hfv 379 (406)
T KOG0295|consen 311 S-----RDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFS--PGG---KYILSCADDKTLRVWDLKNLQCMKTLE-AHEHFV 379 (406)
T ss_pred c-----ccceEEEEeccCCeEEEEEecccceeeeeEEc--CCC---eEEEEEecCCcEEEEEeccceeeeccC-CCccee
Confidence 7 99999999998 8888887 578999999999 999 999999999999999999999999999 899999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 516 IAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
++++|+.+..++++|+-|..+++|.-
T Consensus 380 t~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 380 TSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEecCCCCceEEeccccceeeeeec
Confidence 99999999999999999999999974
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=3.2e-24 Score=243.89 Aligned_cols=224 Identities=13% Similarity=0.123 Sum_probs=187.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++++|+.||+|++||..+++....+. +|.+.|++++|+| ++.+|++|+.||+|++||+..+ ..+..+.
T Consensus 546 ~~las~~~Dg~v~lWd~~~~~~~~~~~-~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~---------~~~~~~~ 615 (793)
T PLN00181 546 SQVASSNFEGVVQVWDVARSQLVTEMK-EHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQG---------VSIGTIK 615 (793)
T ss_pred CEEEEEeCCCeEEEEECCCCeEEEEec-CCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCC---------cEEEEEe
Confidence 489999999999999999877666665 7999999999996 7899999999999999999865 3445565
Q ss_pred CCCccEEEEEEc-cCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 373 GHSACVTDLYLC-AGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 373 ~h~~~V~~l~~s-~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
.+ ..|.++.|+ +++..+++|+.||.|++||+++.+ .+..+.+ | ...|.+++|. ++..|++++ .|++|++
T Consensus 616 ~~-~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~-h-~~~V~~v~f~-~~~~lvs~s-----~D~~iki 686 (793)
T PLN00181 616 TK-ANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIG-H-SKTVSYVRFV-DSSTLVSSS-----TDNTLKL 686 (793)
T ss_pred cC-CCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecC-C-CCCEEEEEEe-CCCEEEEEE-----CCCEEEE
Confidence 44 679999995 578999999999999999998765 4667778 8 8999999997 678899998 8999999
Q ss_pred EEeC-------CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec------------CC
Q psy10778 451 HTIN-------AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN------------TN 510 (556)
Q Consensus 451 wdi~-------g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~------------~~ 510 (556)
||++ +..+..+. |...+.+++|+ +++ .+|++|+.||.|++|+......+..+. ..
T Consensus 687 Wd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s--~~~---~~lasgs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~ 761 (793)
T PLN00181 687 WDLSMSISGINETPLHSFMGHTNVKNFVGLS--VSD---GYIATGSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDD 761 (793)
T ss_pred EeCCCCccccCCcceEEEcCCCCCeeEEEEc--CCC---CEEEEEeCCCEEEEEECCCCCceEEEecccCCcccccccCC
Confidence 9986 24555553 66788999999 888 899999999999999986554432221 13
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
+...|.+++|++++..|++|+.||.|+||++
T Consensus 762 ~~~~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 762 ASQFISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred CCcEEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 4567999999999999999999999999996
|
|
| >KOG0285|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-26 Score=216.15 Aligned_cols=206 Identities=17% Similarity=0.211 Sum_probs=189.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|.+.|.|+++.|...++++|+.|++++|||+.++ +...++.||...|..+++|+-..++.+++.|+.|+.
T Consensus 149 gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg---------~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKC 219 (460)
T KOG0285|consen 149 GHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG---------QLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKC 219 (460)
T ss_pred hccceEEEEeeCCCceeEEecCCCceeEEEEcccC---------eEEEeecchhheeeeeeecccCceEEEecCCCeeEE
Confidence 89999999999999999999999999999999998 666889999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~ 479 (556)
||+...+.+|.+.+ | -+.|.+++.+|.-..|++++ .|.++++||++ ...+..+. |...|.++.+. |-.
T Consensus 220 wDLe~nkvIR~YhG-H-lS~V~~L~lhPTldvl~t~g-----rDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~--~~d- 289 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHG-H-LSGVYCLDLHPTLDVLVTGG-----RDSTIRVWDIRTRASVHVLSGHTNPVASVMCQ--PTD- 289 (460)
T ss_pred EechhhhhHHHhcc-c-cceeEEEeccccceeEEecC-----CcceEEEeeecccceEEEecCCCCcceeEEee--cCC-
Confidence 99999999999999 9 99999999999999999999 99999999998 45566664 88999999998 544
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
..+++|+.|++|++||++.++...++. .|...|++++.+|....+++++.| .|+-|+++.+.....+
T Consensus 290 --pqvit~S~D~tvrlWDl~agkt~~tlt-~hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f~~nl 356 (460)
T KOG0285|consen 290 --PQVITGSHDSTVRLWDLRAGKTMITLT-HHKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEFLQNL 356 (460)
T ss_pred --CceEEecCCceEEEeeeccCceeEeee-cccceeeEEecCCchhhhhccCCc-cceeccCCccchhhcc
Confidence 579999999999999999999999998 799999999999999999988877 6999999998776653
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.9e-25 Score=225.22 Aligned_cols=230 Identities=16% Similarity=0.207 Sum_probs=204.2
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.+|+.|..+|.|.|||.++.+....+...|...|-+++|. +..+.+|+.||.|..+|+.... ....++.+
T Consensus 230 ~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~--------~~~~~~~~ 299 (484)
T KOG0305|consen 230 SHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQ--------HVVSTLQG 299 (484)
T ss_pred CEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecch--------hhhhhhhc
Confidence 3899999999999999998888888875599999999998 5789999999999999999762 11234889
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwd 452 (556)
|...|..+.|++++.++|+|+.|+.+.|||....+....+.. | .+.|.+++|+|- .+.||+|+. +.|+.|++||
T Consensus 300 H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~-H-~aAVKA~awcP~q~~lLAsGGG---s~D~~i~fwn 374 (484)
T KOG0305|consen 300 HRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTE-H-TAAVKALAWCPWQSGLLATGGG---SADRCIKFWN 374 (484)
T ss_pred ccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEec-c-ceeeeEeeeCCCccCceEEcCC---CcccEEEEEE
Confidence 999999999999999999999999999999988888888888 9 999999999995 567777763 3799999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEE--EeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVT--GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t--g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++ |..+..+...+.|.++.|+ +.. +-|++ |..++.|.||+..+.+.+..+. +|...|..++++|||..+++
T Consensus 375 ~~~g~~i~~vdtgsQVcsL~Ws--k~~---kEi~sthG~s~n~i~lw~~ps~~~~~~l~-gH~~RVl~la~SPdg~~i~t 448 (484)
T KOG0305|consen 375 TNTGARIDSVDTGSQVCSLIWS--KKY---KELLSTHGYSENQITLWKYPSMKLVAELL-GHTSRVLYLALSPDGETIVT 448 (484)
T ss_pred cCCCcEecccccCCceeeEEEc--CCC---CEEEEecCCCCCcEEEEeccccceeeeec-CCcceeEEEEECCCCCEEEE
Confidence 98 8999999999999999999 665 34444 5577899999999999999998 89999999999999999999
Q ss_pred EcCCCcEEEEEcCCC
Q psy10778 530 SNTEGLVIIWESSSH 544 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~ 544 (556)
|+.|.++++|++-+.
T Consensus 449 ~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 449 GAADETLRFWNLFDE 463 (484)
T ss_pred ecccCcEEeccccCC
Confidence 999999999999774
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.4e-24 Score=227.68 Aligned_cols=232 Identities=17% Similarity=0.159 Sum_probs=179.6
Q ss_pred eccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
.|+.++.+++|+....+....+. +|.+.|.+++|+|+ +.+||+|+.||+|+||++......... ...++..+.+|..
T Consensus 49 gGG~~gvI~L~~~~r~~~v~~L~-gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~-i~~p~~~L~gH~~ 126 (568)
T PTZ00420 49 GGGLIGAIRLENQMRKPPVIKLK-GHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE-IKDPQCILKGHKK 126 (568)
T ss_pred CCCceeEEEeeecCCCceEEEEc-CCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc-cccceEEeecCCC
Confidence 47789999999987665555554 89999999999996 789999999999999999754210000 0134567889999
Q ss_pred cEEEEEEccCCCE-EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-
Q psy10778 377 CVTDLYLCAGFSV-AVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN- 454 (556)
Q Consensus 377 ~V~~l~~s~~~~~-l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~- 454 (556)
.|.+++|+|++.. +++++.||+|++||+++++.+..+.. ...|.+++|+++|..|++++ .|+.|++||++
T Consensus 127 ~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~---~~~V~SlswspdG~lLat~s-----~D~~IrIwD~Rs 198 (568)
T PTZ00420 127 KISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINM---PKKLSSLKWNIKGNLLSGTC-----VGKHMHIIDPRK 198 (568)
T ss_pred cEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEec---CCcEEEEEECCCCCEEEEEe-----cCCEEEEEECCC
Confidence 9999999998875 57999999999999999988877765 57899999999999999998 89999999998
Q ss_pred CcEEEEee-cCCCeEE-----EEEeeCCCCCcceEEEEEeCCC----eEEEEeCCC-CeEEEEecC-CCCCCeEEEEEec
Q psy10778 455 AQLITSLA-SELRITS-----VTFSNAPEGVSQNVIVTGHSDG----TIQLWSGYK-LAHLLTLNT-NVALPVIAVTYSC 522 (556)
Q Consensus 455 g~~i~~~~-~~~~i~~-----i~~s~~pdg~~~~~l~tg~~dg----~I~iwd~~~-~~~~~~~~~-~h~~~V~~l~~s~ 522 (556)
++.+.++. |.+.+.+ ..|+ +++ .+|++++.++ .|+|||++. .+++..+.. .+.+.+......+
T Consensus 199 g~~i~tl~gH~g~~~s~~v~~~~fs--~d~---~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~ 273 (568)
T PTZ00420 199 QEIASSFHIHDGGKNTKNIWIDGLG--GDD---NYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDES 273 (568)
T ss_pred CcEEEEEecccCCceeEEEEeeeEc--CCC---CEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCC
Confidence 77777664 4444332 2344 566 6788777664 799999985 556665542 2233344444455
Q ss_pred CCCEEEEEcCCCcEEEEEcCCC
Q psy10778 523 DSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+|.++++|+.|+.|++|++..+
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~ 295 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLG 295 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCC
Confidence 6889999999999999999764
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.6e-25 Score=205.50 Aligned_cols=235 Identities=16% Similarity=0.184 Sum_probs=199.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|..|.+|+............+|.+.|..+.|.+|++.+++++.|.+|+.||.+++ +.++..++|
T Consensus 61 ~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG---------~~~rk~k~h 131 (338)
T KOG0265|consen 61 CFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETG---------KRIRKHKGH 131 (338)
T ss_pred eEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEEecccc---------eeeehhccc
Confidence 89999999999999976443333333389999999999999999999999999999999998 677889999
Q ss_pred CccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.+.|+.+.-+.-|. ++.||+.||++++||+++...++++.. ..+++++.|..++..+.+|+ -|+.|++||+
T Consensus 132 ~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~---kyqltAv~f~d~s~qv~sgg-----Idn~ikvWd~ 203 (338)
T KOG0265|consen 132 TSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFEN---KYQLTAVGFKDTSDQVISGG-----IDNDIKVWDL 203 (338)
T ss_pred cceeeecCccccCCeEEEecCCCceEEEEeecccchhhcccc---ceeEEEEEecccccceeecc-----ccCceeeecc
Confidence 99999998555454 778999999999999999999999987 78999999999999999999 8999999999
Q ss_pred C-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----CeEEEEecC-CC--CCCeEEEEEecCC
Q psy10778 454 N-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----LAHLLTLNT-NV--ALPVIAVTYSCDS 524 (556)
Q Consensus 454 ~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----~~~~~~~~~-~h--~~~V~~l~~s~dg 524 (556)
+ +.....+ .|.+.|+.+..+ ++| .++.+-+.|.++++||++- ..++..+.. .| +......+|+|++
T Consensus 204 r~~d~~~~lsGh~DtIt~lsls--~~g---s~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~ 278 (338)
T KOG0265|consen 204 RKNDGLYTLSGHADTITGLSLS--RYG---SFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG 278 (338)
T ss_pred ccCcceEEeecccCceeeEEec--cCC---CccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC
Confidence 7 6666666 478999999999 899 8999999999999999964 345666662 12 3345667999999
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 525 QHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+.+.+|+.|..+++||......+-++.
T Consensus 279 ~~i~ags~dr~vyvwd~~~r~~lyklp 305 (338)
T KOG0265|consen 279 TKITAGSADRFVYVWDTTSRRILYKLP 305 (338)
T ss_pred CccccccccceEEEeecccccEEEEcC
Confidence 999999999999999998866554443
|
|
| >KOG0281|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.1e-26 Score=216.78 Aligned_cols=220 Identities=18% Similarity=0.245 Sum_probs=191.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|.+|++||.++++.+.++. +|...|..+.|+. .++++++.|.++.|||+.... .....+.+.||
T Consensus 249 viisGSSDsTvrvWDv~tge~l~tli-hHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps------~it~rrVLvGH 319 (499)
T KOG0281|consen 249 VIVSGSSDSTVRVWDVNTGEPLNTLI-HHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPT------DITLRRVLVGH 319 (499)
T ss_pred EEEecCCCceEEEEeccCCchhhHHh-hhcceeEEEEEeC--CEEEEecCCceeEEEeccCch------HHHHHHHHhhh
Confidence 89999999999999999999988875 8999999999975 599999999999999998652 11445778999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.|+.+.|+ .++++++|.|.+|++|++.+++.++++.+ | ...|-|+.+. ++.+++|+ .|.+|++||+.
T Consensus 320 rAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~g-H-kRGIAClQYr--~rlvVSGS-----SDntIRlwdi~ 388 (499)
T KOG0281|consen 320 RAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNG-H-KRGIACLQYR--DRLVVSGS-----SDNTIRLWDIE 388 (499)
T ss_pred hhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhc-c-cccceehhcc--CeEEEecC-----CCceEEEEecc
Confidence 9999999997 45999999999999999999999999999 9 8889888875 68888888 89999999998
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE---------EEEecCCCCCCeEEEEEecC
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH---------LLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~---------~~~~~~~h~~~V~~l~~s~d 523 (556)
|.++..++ |++-|.|+.|. + +.+++|+.||+|++||+..+.. +..+. .|.+.|..+.|.
T Consensus 389 ~G~cLRvLeGHEeLvRciRFd---~----krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv-~hsgRVFrLQFD-- 458 (499)
T KOG0281|consen 389 CGACLRVLEGHEELVRCIRFD---N----KRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV-EHSGRVFRLQFD-- 458 (499)
T ss_pred ccHHHHHHhchHHhhhheeec---C----ceeeeccccceEEEEecccccCCcccccchHHHhhh-hccceeEEEeec--
Confidence 88888874 67899999998 2 5799999999999999976542 33333 688899999996
Q ss_pred CCEEEEEcCCCcEEEEEcCCC
Q psy10778 524 SQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~~ 544 (556)
...+++++.|.+|.|||..++
T Consensus 459 ~fqIvsssHddtILiWdFl~~ 479 (499)
T KOG0281|consen 459 EFQIISSSHDDTILIWDFLNG 479 (499)
T ss_pred ceEEEeccCCCeEEEEEcCCC
Confidence 678999999999999998763
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.6e-25 Score=210.05 Aligned_cols=231 Identities=18% Similarity=0.213 Sum_probs=194.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCC---CEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDC---HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg---~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
..+.+|+-||.+|+|+.+. +....+. +|.++|.+++|.... ..+++|+.|.++++|..+.+.... +.+..
T Consensus 116 ~~IltgsYDg~~riWd~~G-k~~~~~~-Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~-----~~~~~ 188 (423)
T KOG0313|consen 116 KWILTGSYDGTSRIWDLKG-KSIKTIV-GHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKV-----KALKV 188 (423)
T ss_pred ceEEEeecCCeeEEEecCC-ceEEEEe-cCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhh-----hHHhH
Confidence 3888999999999999974 4455554 899999988886433 359999999999999998763221 33344
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC-------------------------CeEEEEeCCCCCCCCeeEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-------------------------IGYIREIPCVDPNTPVSHV 425 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-------------------------~~~v~~l~~~h~~~~V~~l 425 (556)
..||...|-+++..++|..++|||.|.++.||+..+ +.++.++.+ | ..+|.++
T Consensus 189 ~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~G-H-t~~Vs~V 266 (423)
T KOG0313|consen 189 CRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEG-H-TEPVSSV 266 (423)
T ss_pred hcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecc-c-ccceeeE
Confidence 559999999999999999999999999999999321 234567888 9 9999999
Q ss_pred EEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--
Q psy10778 426 TMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-- 502 (556)
Q Consensus 426 ~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-- 502 (556)
.|++ ...+.+++ .|.+|+.||+. |..+.++.....++|+.++ +.. ++|++|+.|..+++||.+++.
T Consensus 267 ~w~d-~~v~yS~S-----wDHTIk~WDletg~~~~~~~~~ksl~~i~~~--~~~---~Ll~~gssdr~irl~DPR~~~gs 335 (423)
T KOG0313|consen 267 VWSD-ATVIYSVS-----WDHTIKVWDLETGGLKSTLTTNKSLNCISYS--PLS---KLLASGSSDRHIRLWDPRTGDGS 335 (423)
T ss_pred EEcC-CCceEeec-----ccceEEEEEeecccceeeeecCcceeEeecc--ccc---ceeeecCCCCceeecCCCCCCCc
Confidence 9998 68888888 99999999998 8899999999999999999 776 899999999999999998653
Q ss_pred -EEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCC
Q psy10778 503 -HLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 503 -~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
...++. +|.+.|.++.|+|.. ..|++|+.||++++||+++.+
T Consensus 336 ~v~~s~~-gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k 379 (423)
T KOG0313|consen 336 VVSQSLI-GHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTK 379 (423)
T ss_pred eeEEeee-cchhhhhheecCCCCceEEEEEecCCeEEEEEeccCC
Confidence 344555 899999999999965 678899999999999998854
|
|
| >KOG0265|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=7.5e-25 Score=205.13 Aligned_cols=203 Identities=22% Similarity=0.277 Sum_probs=184.4
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
.+|.+.|..+.|+|+|..||+|+.|..|.+|++.... +-...+.+|++.|..+.|.++++.+++++.|.+++
T Consensus 44 ~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdc--------eN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 44 PGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDC--------ENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVR 115 (338)
T ss_pred CCCcceEEEEEECCCCCeEeecCCcceEEEEeccccc--------cceeeeccccceeEeeeeccCCCEEEEecCCceEE
Confidence 3899999999999999999999999999999976531 33467889999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGV 479 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~ 479 (556)
.||+++|+.++.++. | ..-|+++.-+.-|..+++.++ .|+++++||++ ...++++...-.+++++|. .++
T Consensus 116 ~wD~~tG~~~rk~k~-h-~~~vNs~~p~rrg~~lv~Sgs----dD~t~kl~D~R~k~~~~t~~~kyqltAv~f~--d~s- 186 (338)
T KOG0265|consen 116 GWDAETGKRIRKHKG-H-TSFVNSLDPSRRGPQLVCSGS----DDGTLKLWDIRKKEAIKTFENKYQLTAVGFK--DTS- 186 (338)
T ss_pred EEecccceeeehhcc-c-cceeeecCccccCCeEEEecC----CCceEEEEeecccchhhccccceeEEEEEec--ccc-
Confidence 999999999999999 9 899999987766766655543 89999999999 6677888888899999999 666
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.-+.+|+-|+.|++||++....+..+. +|..+|+.+..+++|.++.+-+.|..+++||++-
T Consensus 187 --~qv~sggIdn~ikvWd~r~~d~~~~ls-Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp 247 (338)
T KOG0265|consen 187 --DQVISGGIDNDIKVWDLRKNDGLYTLS-GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRP 247 (338)
T ss_pred --cceeeccccCceeeeccccCcceEEee-cccCceeeEEeccCCCccccccccceEEEEEecc
Confidence 689999999999999999999999998 9999999999999999999999999999999976
|
|
| >KOG0276|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.7e-24 Score=219.54 Aligned_cols=222 Identities=17% Similarity=0.171 Sum_probs=200.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++|+.|..||+++..+.+.+..+. +|.+-|+|++.+|...++.|+|.|-+|++|+.+.. ..+.+++.||
T Consensus 69 Wiv~GsDD~~IrVfnynt~ekV~~Fe-AH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~--------wa~~qtfeGH 139 (794)
T KOG0276|consen 69 WIVTGSDDMQIRVFNYNTGEKVKTFE-AHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENE--------WACEQTFEGH 139 (794)
T ss_pred eEEEecCCceEEEEecccceeeEEee-ccccceeeeeecCCCCeEEecCCccEEEEeeccCc--------eeeeeEEcCc
Confidence 89999999999999999998888887 89999999999999999999999999999999864 3567899999
Q ss_pred CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC--CeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN--GEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~--~~i~s~s~~~~~~d~~I~iw 451 (556)
..-|.+++|.| |.+.++|+|-|++|+||.+.+..+..++++ | ...|+++.+-+.| .++++|+ .|.++++|
T Consensus 140 ~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~g-H-ekGVN~Vdyy~~gdkpylIsga-----DD~tiKvW 212 (794)
T KOG0276|consen 140 EHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEG-H-EKGVNCVDYYTGGDKPYLISGA-----DDLTIKVW 212 (794)
T ss_pred ceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeec-c-ccCcceEEeccCCCcceEEecC-----CCceEEEe
Confidence 99999999999 556999999999999999999999999999 9 9999999998754 5999999 89999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
|.. ..+++++. |...|..++|+ |.- .++++|++||+++||+..+-++..++.- ...+|++++-.+.++.++.
T Consensus 213 DyQtk~CV~TLeGHt~Nvs~v~fh--p~l---piiisgsEDGTvriWhs~Ty~lE~tLn~-gleRvW~I~~~k~~~~i~v 286 (794)
T KOG0276|consen 213 DYQTKSCVQTLEGHTNNVSFVFFH--PEL---PIIISGSEDGTVRIWNSKTYKLEKTLNY-GLERVWCIAAHKGDGKIAV 286 (794)
T ss_pred ecchHHHHHHhhcccccceEEEec--CCC---cEEEEecCCccEEEecCcceehhhhhhc-CCceEEEEeecCCCCeEEE
Confidence 997 67888885 77899999999 887 8999999999999999988888888773 4688999999998888888
Q ss_pred EcCCCcEEE
Q psy10778 530 SNTEGLVII 538 (556)
Q Consensus 530 gs~Dg~V~v 538 (556)
|..+|.|.+
T Consensus 287 G~Deg~i~v 295 (794)
T KOG0276|consen 287 GFDEGSVTV 295 (794)
T ss_pred eccCCcEEE
Confidence 888877654
|
|
| >KOG0313|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=5.1e-24 Score=205.08 Aligned_cols=234 Identities=18% Similarity=0.232 Sum_probs=196.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce---EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV---IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAST------------ 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~---~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~------------ 359 (556)
.+++++.|.++++|..+.+..... ...+|...|-+++..++|..+++|+.|.++.+|+.......
T Consensus 161 ~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~ 240 (423)
T KOG0313|consen 161 LFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKK 240 (423)
T ss_pred eEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhh
Confidence 688999999999998876543221 11289999999999999999999999999999993221100
Q ss_pred ----ccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 360 ----NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 360 ----~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
.......++.++.||..+|.++.|++ ...+.|+|.|.+|+.||+.++..+.++.+ ...+.++..+|....|+
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~---~ksl~~i~~~~~~~Ll~ 316 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTT---NKSLNCISYSPLSKLLA 316 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeec---CcceeEeecccccceee
Confidence 00111257788999999999999998 66899999999999999999999999988 78999999999999999
Q ss_pred EEeecCcCCCCeEEEEEeC---CcEEEE-e-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecC
Q psy10778 436 SVLQTTKTGGSILRLHTIN---AQLITS-L-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNT 509 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~---g~~i~~-~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~ 509 (556)
+|+ .|..+++||.+ |..+.. + .|...|.++.|+ |... ..|++|+.|+++++||+++.+ ++..+.
T Consensus 317 ~gs-----sdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkws--p~~~--~~~~S~S~D~t~klWDvRS~k~plydI~- 386 (423)
T KOG0313|consen 317 SGS-----SDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWS--PTNE--FQLVSGSYDNTVKLWDVRSTKAPLYDIA- 386 (423)
T ss_pred ecC-----CCCceeecCCCCCCCceeEEeeecchhhhhheecC--CCCc--eEEEEEecCCeEEEEEeccCCCcceeec-
Confidence 999 89999999997 444432 2 588899999999 4432 789999999999999999888 899998
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+|...|.++.|. ++..+++|+.|.+|+|+.-..
T Consensus 387 ~h~DKvl~vdW~-~~~~IvSGGaD~~l~i~~~~~ 419 (423)
T KOG0313|consen 387 GHNDKVLSVDWN-EGGLIVSGGADNKLRIFKGSP 419 (423)
T ss_pred cCCceEEEEecc-CCceEEeccCcceEEEecccc
Confidence 899999999998 467899999999999987543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=8e-25 Score=212.30 Aligned_cols=229 Identities=15% Similarity=0.200 Sum_probs=179.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCC---cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNECDNLIRLKMSKELPA---TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~---~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.|||+++.|.+..+|.+..... ..+.. +|..+|..+.|+||.++|++++.|..+++||+.++ .....
T Consensus 237 kyLAsaSkD~Taiiw~v~~d~~~kl~~tlv-gh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tg---------d~~~~ 306 (519)
T KOG0293|consen 237 KYLASASKDSTAIIWIVVYDVHFKLKKTLV-GHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTG---------DLRHL 306 (519)
T ss_pred eeEeeccCCceEEEEEEecCcceeeeeeee-cccCceEEEEECCCCCeEEecCchHheeeccCCcc---------hhhhh
Confidence 3999999999999998764433 33333 89999999999999999999999999999999987 22222
Q ss_pred e-eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 L-LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+ .+|...+.+++|.|||..+++|+.|+++..||+. |+.+..+++.. ...|.++++++||+++++.+ .|..++
T Consensus 307 y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD-gn~~~~W~gvr-~~~v~dlait~Dgk~vl~v~-----~d~~i~ 379 (519)
T KOG0293|consen 307 YPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD-GNILGNWEGVR-DPKVHDLAITYDGKYVLLVT-----VDKKIR 379 (519)
T ss_pred cccCcCCCcceeEEccCCceeEecCCCCcEEEecCC-cchhhcccccc-cceeEEEEEcCCCcEEEEEe-----ccccee
Confidence 2 2356889999999999999999999999999998 56666666522 45699999999999999988 667777
Q ss_pred EEEeCCcE-EEEeecCCC--------------------------------------------eEEEEEeeCCCCCcceEE
Q psy10778 450 LHTINAQL-ITSLASELR--------------------------------------------ITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 450 iwdi~g~~-i~~~~~~~~--------------------------------------------i~~i~~s~~pdg~~~~~l 484 (556)
+|+...+. +.....+.+ +..-||. |....++
T Consensus 380 l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrSCFg----g~~~~fi 455 (519)
T KOG0293|consen 380 LYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRSCFG----GGNDKFI 455 (519)
T ss_pred eechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEeccC----CCCcceE
Confidence 77653110 001111122 2222333 2223799
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCC
Q psy10778 485 VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~ 544 (556)
++|++|++|+||+..+++++..+. ||...|.+++|+|.. ..+|+++.||+|+||.....
T Consensus 456 aSGSED~kvyIWhr~sgkll~~Ls-GHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 456 ASGSEDSKVYIWHRISGKLLAVLS-GHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred EecCCCceEEEEEccCCceeEeec-CCcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 999999999999999999999999 999999999999955 77899999999999987653
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.93 E-value=9.9e-24 Score=239.87 Aligned_cols=227 Identities=14% Similarity=0.163 Sum_probs=189.9
Q ss_pred ceEEeccCCCeEEEEeCCCC----CC--cceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 294 GMICWNECDNLIRLKMSKEL----PA--TPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~----~~--~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
.++++|+.|+.|+||+.... .. .......+...|.+++|++ ++.+|++|+.||+|++||+.++ +
T Consensus 496 ~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~---------~ 566 (793)
T PLN00181 496 EFFATAGVNKKIKIFECESIIKDGRDIHYPVVELASRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS---------Q 566 (793)
T ss_pred CEEEEEeCCCEEEEEECCcccccccccccceEEecccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC---------e
Confidence 38999999999999997532 11 1122224567899999987 4789999999999999999865 4
Q ss_pred CCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe-CCCCeEEEEeecCcCC
Q psy10778 367 PPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS-ETNGEIASVLQTTKTG 444 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s-p~~~~i~s~s~~~~~~ 444 (556)
.+..+.+|.+.|++++|+| ++.+|++|+.||+|++||++++..+..+.. ...+.++.|+ +++..+++|+ .
T Consensus 567 ~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~---~~~v~~v~~~~~~g~~latgs-----~ 638 (793)
T PLN00181 567 LVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKT---KANICCVQFPSESGRSLAFGS-----A 638 (793)
T ss_pred EEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEec---CCCeEEEEEeCCCCCEEEEEe-----C
Confidence 5577889999999999997 788999999999999999999998888876 4679999995 4688999998 8
Q ss_pred CCeEEEEEeC-Cc-EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC------CeEEEEecCCCCCCe
Q psy10778 445 GSILRLHTIN-AQ-LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK------LAHLLTLNTNVALPV 515 (556)
Q Consensus 445 d~~I~iwdi~-g~-~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~------~~~~~~~~~~h~~~V 515 (556)
|+.|++||++ ++ .+..+ .|...|.+++|. + + .+|++++.|+.|++||+.. .+.+..+. +|...+
T Consensus 639 dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~--~-~---~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~-gh~~~i 711 (793)
T PLN00181 639 DHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV--D-S---STLVSSSTDNTLKLWDLSMSISGINETPLHSFM-GHTNVK 711 (793)
T ss_pred CCeEEEEECCCCCccceEecCCCCCEEEEEEe--C-C---CEEEEEECCCEEEEEeCCCCccccCCcceEEEc-CCCCCe
Confidence 9999999997 33 34343 577899999997 3 4 6899999999999999974 35677887 899999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 516 IAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
..++|++++.+|++|+.||.|++|+....
T Consensus 712 ~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 712 NFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred eEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 99999999999999999999999997654
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=4.8e-24 Score=220.33 Aligned_cols=234 Identities=17% Similarity=0.238 Sum_probs=209.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc----cccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN----KIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~----~~~~~~~~~~ 370 (556)
+++.|...|.+.++|+.+......+. +|.+.|..++.+||++.++|||.|.+|++|+.......+ +....+..++
T Consensus 426 ~Iv~G~k~Gel~vfdlaS~~l~Eti~-AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 426 YIVLGTKNGELQVFDLASASLVETIR-AHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRT 504 (888)
T ss_pred eEEEeccCCceEEEEeehhhhhhhhh-ccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceE
Confidence 89999999999999999988888887 899999999999999999999999999999987542211 1111112222
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
+ .-...|.|+++||||++|+.+--|.+|+||-+.+.+...++-+ | .-||.||.++||++.|++|+ .|.+|++
T Consensus 505 L-el~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYG-H-kLPV~smDIS~DSklivTgS-----ADKnVKi 576 (888)
T KOG0306|consen 505 L-ELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYG-H-KLPVLSMDISPDSKLIVTGS-----ADKNVKI 576 (888)
T ss_pred E-eccccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecc-c-ccceeEEeccCCcCeEEecc-----CCCceEE
Confidence 2 2457899999999999999999999999999999999999999 9 99999999999999999999 8999999
Q ss_pred EEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEE
Q psy10778 451 HTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 451 wdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 528 (556)
|-++ |.+..++ .|...|.++.|. |.. ..+.+++.|+.|+-||-...+.+..+. +|...|++++.+|+|.+++
T Consensus 577 WGLdFGDCHKS~fAHdDSvm~V~F~--P~~---~~FFt~gKD~kvKqWDg~kFe~iq~L~-~H~~ev~cLav~~~G~~vv 650 (888)
T KOG0306|consen 577 WGLDFGDCHKSFFAHDDSVMSVQFL--PKT---HLFFTCGKDGKVKQWDGEKFEEIQKLD-GHHSEVWCLAVSPNGSFVV 650 (888)
T ss_pred eccccchhhhhhhcccCceeEEEEc--ccc---eeEEEecCcceEEeechhhhhhheeec-cchheeeeeEEcCCCCeEE
Confidence 9999 8888776 689999999999 777 789999999999999999999999998 8999999999999999999
Q ss_pred EEcCCCcEEEEEcCC
Q psy10778 529 ASNTEGLVIIWESSS 543 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~ 543 (556)
+++.|.+|++|....
T Consensus 651 s~shD~sIRlwE~td 665 (888)
T KOG0306|consen 651 SSSHDKSIRLWERTD 665 (888)
T ss_pred eccCCceeEeeeccC
Confidence 999999999999765
|
|
| >KOG0316|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.2e-24 Score=197.11 Aligned_cols=206 Identities=18% Similarity=0.159 Sum_probs=188.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.+.++|.++.|+-+|++.++++.|.+|++|+...+ .++++..+|..+|..++.+.|...+++|+.|..|.+
T Consensus 15 ~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg---------~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~v 85 (307)
T KOG0316|consen 15 CAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG---------ALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQV 85 (307)
T ss_pred ccccceEEEEEccCCCEEEEcCCCceEEeeccccc---------ceeeeecCCCceeeeccccccccccccCCCCceEEE
Confidence 68899999999999999999999999999998877 778999999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---CcEEEEee-cCCCeEEEEEeeCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN---AQLITSLA-SELRITSVTFSNAPE 477 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g~~i~~~~-~~~~i~~i~~s~~pd 477 (556)
||+++|+.++.+.+ | .+.|+.++|+.+...+++++ -|..+++||-+ -++++.+. ....|.++..+
T Consensus 86 wDV~TGkv~Rr~rg-H-~aqVNtV~fNeesSVv~Sgs-----fD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~---- 154 (307)
T KOG0316|consen 86 WDVNTGKVDRRFRG-H-LAQVNTVRFNEESSVVASGS-----FDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVA---- 154 (307)
T ss_pred EEcccCeeeeeccc-c-cceeeEEEecCcceEEEecc-----ccceeEEEEcccCCCCccchhhhhcCceeEEEec----
Confidence 99999999999999 9 99999999999999999999 99999999997 45777764 56789999887
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeecc
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
+ ..|++|+.||++|.||++.|++..... ..+|+++.|++|++..++++.|+++++.|-.+++.+..++..
T Consensus 155 ~---heIvaGS~DGtvRtydiR~G~l~sDy~---g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGh 224 (307)
T KOG0316|consen 155 E---HEIVAGSVDGTVRTYDIRKGTLSSDYF---GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGH 224 (307)
T ss_pred c---cEEEeeccCCcEEEEEeecceeehhhc---CCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhccc
Confidence 3 689999999999999999999877765 469999999999999999999999999999998877666543
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.8e-25 Score=219.71 Aligned_cols=223 Identities=15% Similarity=0.207 Sum_probs=191.8
Q ss_pred ceEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++++|+.|+.|+||++-. ++++.++. +|..+|..++|+++|..+.+++.|+.+++||++++ ++...+.
T Consensus 228 hLlLS~gmD~~vklW~vy~~~~~lrtf~-gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG---------~~~~~f~ 297 (503)
T KOG0282|consen 228 HLLLSGGMDGLVKLWNVYDDRRCLRTFK-GHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETG---------QVLSRFH 297 (503)
T ss_pred eEEEecCCCceEEEEEEecCcceehhhh-cchhhhhhhhccccCCeeeeeecceeeeeeccccc---------eEEEEEe
Confidence 3899999999999999876 66777775 99999999999999999999999999999999998 3333332
Q ss_pred CCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
-...++|+.|.|++ +.+++|+.|+.|+.||+++++.++.+.. | -+.|..+.|-+++..+++.+ .++.+++|
T Consensus 298 -~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~-h-Lg~i~~i~F~~~g~rFissS-----Ddks~riW 369 (503)
T KOG0282|consen 298 -LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDR-H-LGAILDITFVDEGRRFISSS-----DDKSVRIW 369 (503)
T ss_pred -cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHh-h-hhheeeeEEccCCceEeeec-----cCccEEEE
Confidence 23467899999998 7999999999999999999999999988 8 89999999999999999999 89999999
Q ss_pred EeC-CcEE--------------------------------EEee-----------------cCCCeEEEEEeeCCCCCcc
Q psy10778 452 TIN-AQLI--------------------------------TSLA-----------------SELRITSVTFSNAPEGVSQ 481 (556)
Q Consensus 452 di~-g~~i--------------------------------~~~~-----------------~~~~i~~i~~s~~pdg~~~ 481 (556)
+.+ .-.+ ..+. ..+.-..+.|| |||
T Consensus 370 e~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS--pDG--- 444 (503)
T KOG0282|consen 370 ENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS--PDG--- 444 (503)
T ss_pred EcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc--CCC---
Confidence 864 1100 0000 02344677899 999
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEE
Q psy10778 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWE 540 (556)
Q Consensus 482 ~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwd 540 (556)
.+|++|+.||.+.+||..+.+++..+. .|..+++.+.|+|.. ..+++++.||.|++|+
T Consensus 445 ~~l~SGdsdG~v~~wdwkt~kl~~~lk-ah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 445 RTLCSGDSDGKVNFWDWKTTKLVSKLK-AHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CeEEeecCCccEEEeechhhhhhhccc-cCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 999999999999999999999999998 789999999999965 7899999999999996
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.93 E-value=3e-24 Score=212.89 Aligned_cols=224 Identities=18% Similarity=0.253 Sum_probs=194.8
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++|+|...|.|+++|.++...+..+. +|..+|..+.|+|. +..+++|+.|+.+++||+.+. .....+.
T Consensus 81 ~LlaaGD~sG~V~vfD~k~r~iLR~~~-ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a---------~v~~~l~ 150 (487)
T KOG0310|consen 81 RLLAAGDESGHVKVFDMKSRVILRQLY-AHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTA---------YVQAELS 150 (487)
T ss_pred eEEEccCCcCcEEEeccccHHHHHHHh-hccCceeEEEecccCCeEEEecCCCceEEEEEcCCc---------EEEEEec
Confidence 399999999999999966644444554 89999999999986 557888999999999999875 2345789
Q ss_pred CCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 373 GHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
+|++.|.|.+|+|.. .+++|||.||+|++||++.. ..+.++.. ..+|..+.+-|.|..|++++ ++.|++
T Consensus 151 ~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnh---g~pVe~vl~lpsgs~iasAg------Gn~vkV 221 (487)
T KOG0310|consen 151 GHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNH---GCPVESVLALPSGSLIASAG------GNSVKV 221 (487)
T ss_pred CCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecC---CCceeeEEEcCCCCEEEEcC------CCeEEE
Confidence 999999999999965 48999999999999999987 67778875 89999999999999999985 789999
Q ss_pred EEeC--CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 451 HTIN--AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 451 wdi~--g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
||+. ++++.... |...|+|+++. .++ ..|++|+-|+.|++||+.+.+.+..+. ..++|.+++.+|+++.+
T Consensus 222 WDl~~G~qll~~~~~H~KtVTcL~l~--s~~---~rLlS~sLD~~VKVfd~t~~Kvv~s~~--~~~pvLsiavs~dd~t~ 294 (487)
T KOG0310|consen 222 WDLTTGGQLLTSMFNHNKTVTCLRLA--SDS---TRLLSGSLDRHVKVFDTTNYKVVHSWK--YPGPVLSIAVSPDDQTV 294 (487)
T ss_pred EEecCCceehhhhhcccceEEEEEee--cCC---ceEeecccccceEEEEccceEEEEeee--cccceeeEEecCCCceE
Confidence 9997 45555554 89999999999 777 899999999999999999999999987 67999999999999999
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
+.|..||.+.+-....
T Consensus 295 viGmsnGlv~~rr~~~ 310 (487)
T KOG0310|consen 295 VIGMSNGLVSIRRREV 310 (487)
T ss_pred EEecccceeeeehhhc
Confidence 9999999998875544
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.5e-24 Score=204.29 Aligned_cols=235 Identities=14% Similarity=0.161 Sum_probs=206.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-------CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-------PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-------~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
|+++|+.||-|.+|+..+|++...+.. -+.++|.|+.|+.|...+|+|+.||.|+||.+.++ .+
T Consensus 227 yLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG---------~C 297 (508)
T KOG0275|consen 227 YLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETG---------QC 297 (508)
T ss_pred eEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEecc---------hH
Confidence 999999999999999998876654332 36789999999999999999999999999999998 56
Q ss_pred CeEee-CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 368 PTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 368 ~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
++.+. +|+..|+|+.|+.|+..+.+++.|.++++.-+.+|+.+..+.+ | .+-|+...|.++|..|++++ .||
T Consensus 298 lRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrG-H-sSyvn~a~ft~dG~~iisaS-----sDg 370 (508)
T KOG0275|consen 298 LRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRG-H-SSYVNEATFTDDGHHIISAS-----SDG 370 (508)
T ss_pred HHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcC-c-cccccceEEcCCCCeEEEec-----CCc
Confidence 66665 8999999999999999999999999999999999999999999 9 99999999999999999999 899
Q ss_pred eEEEEEeC-CcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC--CCCeEEEEE
Q psy10778 447 ILRLHTIN-AQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--ALPVIAVTY 520 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h--~~~V~~l~~ 520 (556)
+|++|+.. ++++.+++. .-+|+++..- |... ..++++...++|++.++ .|+.++.+..+. .+...+.++
T Consensus 371 tvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~--PKnp--eh~iVCNrsntv~imn~-qGQvVrsfsSGkREgGdFi~~~l 445 (508)
T KOG0275|consen 371 TVKVWHGKTTECLSTFKPLGTDYPVNSVILL--PKNP--EHFIVCNRSNTVYIMNM-QGQVVRSFSSGKREGGDFINAIL 445 (508)
T ss_pred cEEEecCcchhhhhhccCCCCcccceeEEEc--CCCC--ceEEEEcCCCeEEEEec-cceEEeeeccCCccCCceEEEEe
Confidence 99999997 788887753 4578888877 4433 57888888999999998 799999997632 455778889
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
||.|..+++.++|+.++.+.+.+++...++
T Consensus 446 SpkGewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 446 SPKGEWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred cCCCcEEEEEccCcEEEEEEeecCceeeee
Confidence 999999999999999999999887765444
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=7.5e-25 Score=205.51 Aligned_cols=218 Identities=21% Similarity=0.273 Sum_probs=183.7
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc---------cccccCCCeEeeCCCccEEEEEEccCCCEEE
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN---------KIEFCKPPTILLGHSACVTDLYLCAGFSVAV 391 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~---------~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~ 391 (556)
..|.+++++.+|++||.++|||+.|..|+|.|++..-.+. .......++++..|.++|+++.|+|...+|+
T Consensus 109 t~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~ILi 188 (430)
T KOG0640|consen 109 TSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETILI 188 (430)
T ss_pred eecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhheEE
Confidence 3799999999999999999999999999999987321111 1111245688999999999999999999999
Q ss_pred EEcCCCcEEEEeCCCCeEE---EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe----ec
Q psy10778 392 SSSEDGTCLLWDINTIGYI---REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL----AS 463 (556)
Q Consensus 392 sgs~Dg~I~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~----~~ 463 (556)
||+.|++|+++|...-... +.+.. ..+|+++.|+|.|.++++|. ...++++||++ .++.... .|
T Consensus 189 S~srD~tvKlFDfsK~saKrA~K~~qd---~~~vrsiSfHPsGefllvgT-----dHp~~rlYdv~T~QcfvsanPd~qh 260 (430)
T KOG0640|consen 189 SGSRDNTVKLFDFSKTSAKRAFKVFQD---TEPVRSISFHPSGEFLLVGT-----DHPTLRLYDVNTYQCFVSANPDDQH 260 (430)
T ss_pred eccCCCeEEEEecccHHHHHHHHHhhc---cceeeeEeecCCCceEEEec-----CCCceeEEeccceeEeeecCccccc
Confidence 9999999999999754322 23333 57899999999999999998 78999999998 4444333 46
Q ss_pred CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 464 ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 464 ~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.+.|+++.++ +.| ++.++|+.||.|++||--+++++.++...| ...|.+..|+.+|+++++.+.|..|++|++.
T Consensus 261 t~ai~~V~Ys--~t~---~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~ 335 (430)
T KOG0640|consen 261 TGAITQVRYS--STG---SLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEIS 335 (430)
T ss_pred ccceeEEEec--CCc---cEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeec
Confidence 7899999999 889 899999999999999999999999998766 4679999999999999999999999999999
Q ss_pred CCCCcCeee
Q psy10778 543 SHNRTPKFL 551 (556)
Q Consensus 543 ~~~~~~~~~ 551 (556)
++..+..+.
T Consensus 336 t~R~l~~Yt 344 (430)
T KOG0640|consen 336 TGRMLKEYT 344 (430)
T ss_pred CCceEEEEe
Confidence 977665543
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.6e-24 Score=194.96 Aligned_cols=222 Identities=19% Similarity=0.244 Sum_probs=185.4
Q ss_pred CCeEEEEeCCCCCCcc-eEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 302 DNLIRLKMSKELPATP-VIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~-~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
.|++.|-+....+.+. .....-.+.+-.++|+++ .+.+++++.||++++||.... ..++..++.|..+|.
T Consensus 37 ~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~--------s~Pi~~~kEH~~EV~ 108 (311)
T KOG0277|consen 37 NGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLTMP--------SKPIHKFKEHKREVY 108 (311)
T ss_pred CceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccCCC--------CcchhHHHhhhhheE
Confidence 4677777775333332 222345678999999986 467889999999999995432 157889999999999
Q ss_pred EEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEEeC--C
Q psy10778 380 DLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHTIN--A 455 (556)
Q Consensus 380 ~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwdi~--g 455 (556)
++.|++. ...++++|.||+|++|+....+.++++.+ | ...|...+|+|. .+.+++++ .|+++++||++ |
T Consensus 109 Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~g-h-~~~Iy~a~~sp~~~nlfas~S-----gd~~l~lwdvr~~g 181 (311)
T KOG0277|consen 109 SVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNG-H-NSCIYQAAFSPHIPNLFASAS-----GDGTLRLWDVRSPG 181 (311)
T ss_pred EeccccccceeEEeeccCCceEeecCCCCcceEeecC-C-ccEEEEEecCCCCCCeEEEcc-----CCceEEEEEecCCC
Confidence 9999984 45788889999999999999999999999 9 999999999996 56777777 89999999998 7
Q ss_pred cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCC-CEEEEEcCC
Q psy10778 456 QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDS-QHLYASNTE 533 (556)
Q Consensus 456 ~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~D 533 (556)
+.+....|...+.|+.|+...+ ++|+||+.|+.|+.||++..+ ++..+. +|.-.|+.++|||.. ..|++++-|
T Consensus 182 k~~~i~ah~~Eil~cdw~ky~~----~vl~Tg~vd~~vr~wDir~~r~pl~eL~-gh~~AVRkvk~Sph~~~lLaSasYD 256 (311)
T KOG0277|consen 182 KFMSIEAHNSEILCCDWSKYNH----NVLATGGVDNLVRGWDIRNLRTPLFELN-GHGLAVRKVKFSPHHASLLASASYD 256 (311)
T ss_pred ceeEEEeccceeEeecccccCC----cEEEecCCCceEEEEehhhccccceeec-CCceEEEEEecCcchhhHhhhcccc
Confidence 7777556788999999995333 799999999999999998765 567776 899999999999975 688899999
Q ss_pred CcEEEEEcCC
Q psy10778 534 GLVIIWESSS 543 (556)
Q Consensus 534 g~V~vwdl~~ 543 (556)
-++++||...
T Consensus 257 mT~riw~~~~ 266 (311)
T KOG0277|consen 257 MTVRIWDPER 266 (311)
T ss_pred ceEEeccccc
Confidence 9999999875
|
|
| >KOG0645|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.2e-23 Score=190.93 Aligned_cols=203 Identities=17% Similarity=0.204 Sum_probs=175.9
Q ss_pred CCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-eCCCccEEEEEEccCCCEEEEEcCCCc
Q psy10778 321 PPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSEDGT 398 (556)
Q Consensus 321 ~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 398 (556)
.+|.+.+..++|+|- |..||+|+.|..|++|+...+.. . .+...+ .+|+..|..++|+|.|++|++||-|++
T Consensus 11 ~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s----~--~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t 84 (312)
T KOG0645|consen 11 SGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDS----W--TCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT 84 (312)
T ss_pred cCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCc----E--EEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence 379999999999998 88999999999999999874210 1 222233 479999999999999999999999999
Q ss_pred EEEEeCCCC--eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-C---cEEEEe-ecCCCeEEEE
Q psy10778 399 CLLWDINTI--GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-A---QLITSL-ASELRITSVT 471 (556)
Q Consensus 399 I~iwdl~~~--~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g---~~i~~~-~~~~~i~~i~ 471 (556)
+.||.-..+ +++.++++ | ...|.+++|+++|++||+++ +|..|-+|.+. + +++..+ .|...|..+.
T Consensus 85 ~~Iw~k~~~efecv~~lEG-H-EnEVK~Vaws~sG~~LATCS-----RDKSVWiWe~deddEfec~aVL~~HtqDVK~V~ 157 (312)
T KOG0645|consen 85 VVIWKKEDGEFECVATLEG-H-ENEVKCVAWSASGNYLATCS-----RDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVI 157 (312)
T ss_pred EEEeecCCCceeEEeeeec-c-ccceeEEEEcCCCCEEEEee-----CCCeEEEEEecCCCcEEEEeeeccccccccEEE
Confidence 999976644 67889999 9 99999999999999999999 99999999997 2 344555 4788999999
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEEeCC---CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLWSGY---KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iwd~~---~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
|+ |.. .+|++++.|.+|++|+-. ...++.++. +|...|.+++|++.|..|++++.|++|+||...
T Consensus 158 WH--Pt~---dlL~S~SYDnTIk~~~~~~dddW~c~~tl~-g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 158 WH--PTE---DLLFSCSYDNTIKVYRDEDDDDWECVQTLD-GHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred Ec--CCc---ceeEEeccCCeEEEEeecCCCCeeEEEEec-CccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 99 655 699999999999999865 456889998 899999999999999999999999999999854
|
|
| >KOG0282|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=4.6e-25 Score=218.22 Aligned_cols=210 Identities=17% Similarity=0.202 Sum_probs=181.6
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
+|...|+++.|.| .+.+|++|+.|+.|+||++.... ++++++.+|..+|.+++|+.+|..+.|+|-|+.++
T Consensus 212 gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~--------~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lK 283 (503)
T KOG0282|consen 212 GHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDR--------RCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLK 283 (503)
T ss_pred CCccccchhhhccceeeEEEecCCCceEEEEEEecCc--------ceehhhhcchhhhhhhhccccCCeeeeeecceeee
Confidence 8999999999999 89999999999999999998631 67899999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPE 477 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pd 477 (556)
+||+++|+++..+.. ...+.++.++|++ +.+++|+ .++.|+.||++ ++.++++. |-+.|..+.|- ++
T Consensus 284 lwDtETG~~~~~f~~---~~~~~cvkf~pd~~n~fl~G~-----sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~--~~ 353 (503)
T KOG0282|consen 284 LWDTETGQVLSRFHL---DKVPTCVKFHPDNQNIFLVGG-----SDKKIRQWDIRSGKVVQEYDRHLGAILDITFV--DE 353 (503)
T ss_pred eeccccceEEEEEec---CCCceeeecCCCCCcEEEEec-----CCCcEEEEeccchHHHHHHHhhhhheeeeEEc--cC
Confidence 999999999999987 7899999999998 6667777 89999999998 88888874 56899999999 88
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEE----------------------------------------------EecCCC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLL----------------------------------------------TLNTNV 511 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~----------------------------------------------~~~~~h 511 (556)
| +.+++.++|+.++||+.+....+. .+. +|
T Consensus 354 g---~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~fe-Gh 429 (503)
T KOG0282|consen 354 G---RRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFE-GH 429 (503)
T ss_pred C---ceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhc-ce
Confidence 9 899999999999999873221111 111 23
Q ss_pred --CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeecc
Q psy10778 512 --ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 512 --~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
.+--..+.|||||++|++|+.||.+.+||.++.+.+.++++.
T Consensus 430 ~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 430 SVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred eccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 233567899999999999999999999999998777776643
|
|
| >KOG0315|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.3e-23 Score=188.03 Aligned_cols=203 Identities=16% Similarity=0.233 Sum_probs=172.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE-eeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI-LLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~-l~~ 373 (556)
.+.+|++||+++|||+........+ .|..+|+++..+|+...|++|..+|.|++||+... .+... +..
T Consensus 97 WMyTgseDgt~kIWdlR~~~~qR~~--~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~---------~c~~~liPe 165 (311)
T KOG0315|consen 97 WMYTGSEDGTVKIWDLRSLSCQRNY--QHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN---------SCTHELIPE 165 (311)
T ss_pred EEEecCCCceEEEEeccCcccchhc--cCCCCcceEEecCCcceEEeecCCCcEEEEEccCC---------ccccccCCC
Confidence 7889999999999999985544444 58899999999999999999999999999999865 12222 233
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
-...|.++...|+|++++.+...|++.+|++-.. +++.+++. | .+.+..+.+||++++||+++ .|.+
T Consensus 166 ~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~a-h-~~~il~C~lSPd~k~lat~s-----sdkt 238 (311)
T KOG0315|consen 166 DDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQA-H-NGHILRCLLSPDVKYLATCS-----SDKT 238 (311)
T ss_pred CCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheec-c-cceEEEEEECCCCcEEEeec-----CCce
Confidence 4568999999999999999999999999998764 35567777 8 89999999999999999999 8999
Q ss_pred EEEEEeCCcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 448 LRLHTINAQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 448 I~iwdi~g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
++||++++-...+. .|+..+..++|| .|| .+|+||+.|+.+++|++..++.++... +|..+..|+++.
T Consensus 239 v~iwn~~~~~kle~~l~gh~rWvWdc~FS--~dg---~YlvTassd~~~rlW~~~~~k~v~qy~-gh~K~~vc~~ln 309 (311)
T KOG0315|consen 239 VKIWNTDDFFKLELVLTGHQRWVWDCAFS--ADG---EYLVTASSDHTARLWDLSAGKEVRQYQ-GHHKAAVCVALN 309 (311)
T ss_pred EEEEecCCceeeEEEeecCCceEEeeeec--cCc---cEEEecCCCCceeecccccCceeeecC-CcccccEEEEee
Confidence 99999986533222 367899999999 899 899999999999999999999999998 777777777764
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.6e-23 Score=220.44 Aligned_cols=199 Identities=16% Similarity=0.197 Sum_probs=165.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~ 400 (556)
+|.+.|..+.|+.+ .+|++++.|.+|++|++... ++++.+ .|.+-|||++|+| |.++++|||-||.|+
T Consensus 367 GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~---------~CL~~F-~HndfVTcVaFnPvDDryFiSGSLD~KvR 435 (712)
T KOG0283|consen 367 GHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRK---------ECLKVF-SHNDFVTCVAFNPVDDRYFISGSLDGKVR 435 (712)
T ss_pred ccchhheecccccC-CeeEeccccccEEeecCCCc---------ceeeEE-ecCCeeEEEEecccCCCcEeecccccceE
Confidence 79999999999987 69999999999999999865 555554 5999999999999 678999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE-ee---------cCCCeEEE
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS-LA---------SELRITSV 470 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~-~~---------~~~~i~~i 470 (556)
||++...+.+.-... ..-|+++++.|+|+..++|+ .+|.+++|++.+..+.. .. ....|+.+
T Consensus 436 iWsI~d~~Vv~W~Dl---~~lITAvcy~PdGk~avIGt-----~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~ 507 (712)
T KOG0283|consen 436 LWSISDKKVVDWNDL---RDLITAVCYSPDGKGAVIGT-----FNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGL 507 (712)
T ss_pred EeecCcCeeEeehhh---hhhheeEEeccCCceEEEEE-----eccEEEEEEccCCeEEEeeeEeeccCccccCceeeee
Confidence 999998766665555 57899999999999999999 89999999998643322 11 12379999
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|.+ ... ..+++.+.|..|||+|.++.+++..+...+ ...-....|+.||++|+++++|..|++|+...
T Consensus 508 Q~~p--~~~--~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 508 QFFP--GDP--DEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred EecC--CCC--CeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 9994 332 356777789999999999999888887422 34456778999999999999999999999855
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.8e-24 Score=210.16 Aligned_cols=233 Identities=18% Similarity=0.175 Sum_probs=202.6
Q ss_pred eEEeccCCCeEEEEeCCCCC--CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELP--ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~--~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.|++|+.|..|++|+...++ ....+. +..++|+++.+.++++.+++++.|+.+++|++... +...++.
T Consensus 189 tlatgg~Dr~Ik~W~v~~~k~~~~~tLa-Gs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~---------r~~~TLs 258 (459)
T KOG0288|consen 189 TLATGGSDRIIKLWNVLGEKSELISTLA-GSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSL---------RLRHTLS 258 (459)
T ss_pred hhhhcchhhhhhhhhcccchhhhhhhhh-ccCCCcceeeecCCCceEEeecCCCceeeeeccch---------hhhhhhc
Confidence 78999999999999998766 333343 67788999999999999999999999999999876 6678999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
||++.|+++.|......+++|+.|.+|++||+....+.+++.. .+.+..|..+ ...++++. .|++|++||
T Consensus 259 GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C~kt~l~---~S~cnDI~~~--~~~~~SgH-----~DkkvRfwD 328 (459)
T KOG0288|consen 259 GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYCSKTVLP---GSQCNDIVCS--ISDVISGH-----FDKKVRFWD 328 (459)
T ss_pred ccccceeeehhhccccceeeccccchhhhhhhhhhheeccccc---cccccceEec--ceeeeecc-----cccceEEEe
Confidence 9999999999988777799999999999999999888888766 6777888776 45677777 899999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCCeEEEEEecCCCEEE
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~s~dg~~l~ 528 (556)
++ +.+..+....+.|+++..+ ++| .-|++.+.|.++.+.|+++.+....+.. ......+.+.|||++.+++
T Consensus 329 ~Rs~~~~~sv~~gg~vtSl~ls--~~g---~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~Yva 403 (459)
T KOG0288|consen 329 IRSADKTRSVPLGGRVTSLDLS--MDG---LELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVA 403 (459)
T ss_pred ccCCceeeEeecCcceeeEeec--cCC---eEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceee
Confidence 98 7888888888999999999 888 7888889999999999999888877764 1234488999999999999
Q ss_pred EEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 529 ASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
+|+.||.|+||++.+++....+..
T Consensus 404 AGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 404 AGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eccCCCcEEEEEccCceEEEEecc
Confidence 999999999999999887766653
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.9e-22 Score=190.87 Aligned_cols=233 Identities=18% Similarity=0.209 Sum_probs=196.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++++.|.+++|||..+++....+. .+.-+|..++|......++.++. |.+|+..++..+ +.++.+.
T Consensus 28 ~litss~dDsl~LYd~~~g~~~~ti~-skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dN---------kylRYF~ 97 (311)
T KOG1446|consen 28 LLITSSEDDSLRLYDSLSGKQVKTIN-SKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDN---------KYLRYFP 97 (311)
T ss_pred EEEEecCCCeEEEEEcCCCceeeEee-cccccccEEEEecCCceEEEccCCCCCceEEEEeecC---------ceEEEcC
Confidence 56667899999999999999888886 45567888888877777777775 889999999987 7789999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
||...|+.|+.+|-+..++|++.|++|++||++..++...+.. ..-..+|++|+|-.+|++. ....|++||
T Consensus 98 GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~----~~~pi~AfDp~GLifA~~~-----~~~~IkLyD 168 (311)
T KOG1446|consen 98 GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNL----SGRPIAAFDPEGLIFALAN-----GSELIKLYD 168 (311)
T ss_pred CCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEec----CCCcceeECCCCcEEEEec-----CCCeEEEEE
Confidence 9999999999999999999999999999999998777666654 2334588999999999987 566999999
Q ss_pred eC---CcEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCC---eEEEEEec
Q psy10778 453 IN---AQLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALP---VIAVTYSC 522 (556)
Q Consensus 453 i~---g~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~---V~~l~~s~ 522 (556)
++ +.+..++. .....+.+.|| |+| ++|+.++..+.+++.|..+|....++.. +... -.+.+|+|
T Consensus 169 ~Rs~dkgPF~tf~i~~~~~~ew~~l~FS--~dG---K~iLlsT~~s~~~~lDAf~G~~~~tfs~-~~~~~~~~~~a~ftP 242 (311)
T KOG1446|consen 169 LRSFDKGPFTTFSITDNDEAEWTDLEFS--PDG---KSILLSTNASFIYLLDAFDGTVKSTFSG-YPNAGNLPLSATFTP 242 (311)
T ss_pred ecccCCCCceeEccCCCCccceeeeEEc--CCC---CEEEEEeCCCcEEEEEccCCcEeeeEee-ccCCCCcceeEEECC
Confidence 97 34555543 35688999999 999 8999999999999999999999888873 3222 25789999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 523 DSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
|++++++|+.||+|.+|++++++++.++.+
T Consensus 243 ds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 243 DSKFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred CCcEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 999999999999999999999988877765
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.92 E-value=6.8e-23 Score=189.09 Aligned_cols=214 Identities=15% Similarity=0.190 Sum_probs=188.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
.+|..+++.+.++.+|.+|++++.|.+..||-...+ +.+.++.||++.|+|+..+-+.+.+++|+.|.+++
T Consensus 7 ~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG---------erlGty~GHtGavW~~Did~~s~~liTGSAD~t~k 77 (327)
T KOG0643|consen 7 QGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG---------ERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAK 77 (327)
T ss_pred ccCccccceEEecCCCcEEEEecCCCCceEEEecCC---------ceeeeecCCCceEEEEEecCCcceeeeccccceeE
Confidence 489999999999999999999999999999998766 66789999999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-------C-cEEEEe-ecCCCeEEEE
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-------A-QLITSL-ASELRITSVT 471 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-------g-~~i~~~-~~~~~i~~i~ 471 (556)
+||+.+|+.+.+++. ..+|..+.|+++|.+++.+....-+..+.|.++|++ + +++..+ .+.+.++.+-
T Consensus 78 LWDv~tGk~la~~k~---~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~ 154 (327)
T KOG0643|consen 78 LWDVETGKQLATWKT---NSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSAL 154 (327)
T ss_pred EEEcCCCcEEEEeec---CCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeee
Confidence 999999999999998 799999999999999988876555567889999986 1 223333 4578999999
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|+ |-+ .+|++|.+||.|..||+++++.+..-...|...|+.|.+++|..++++++.|.+-++||+.+-..+.++.
T Consensus 155 Wg--~l~---~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 155 WG--PLG---ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred ec--ccC---CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99 888 8999999999999999999865554433788999999999999999999999999999999966665554
|
|
| >KOG0318|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.4e-22 Score=200.61 Aligned_cols=235 Identities=15% Similarity=0.196 Sum_probs=189.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcc--eEcCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCccccc-----
Q psy10778 295 MICWNECDNLIRLKMSKELPATP--VIRPPLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNKIE----- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~--~~~~~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~----- 363 (556)
|+|+|-..|.||+|+......+. .++ .-.++|..++|+.++++|++.++. |.+.+||.- ...+...
T Consensus 73 yiASGD~sG~vRIWdtt~~~hiLKnef~-v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG--~SvGei~GhSr~ 149 (603)
T KOG0318|consen 73 YIASGDVSGKVRIWDTTQKEHILKNEFQ-VLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG--NSVGEITGHSRR 149 (603)
T ss_pred EEeecCCcCcEEEEeccCcceeeeeeee-ecccccccceeCCCCcEEEEEecCccceeEEEEecCC--Cccceeecccee
Confidence 99999999999999987543222 222 346789999999999888776643 334555532 2111100
Q ss_pred -----------------------------ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC
Q psy10778 364 -----------------------------FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP 414 (556)
Q Consensus 364 -----------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~ 414 (556)
..+...++..|..-|.|+.++|||++++|++.||++.+||=.+++.+..+.
T Consensus 150 ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktge~vg~l~ 229 (603)
T KOG0318|consen 150 INSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTGEKVGELE 229 (603)
T ss_pred EeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCccEEEEec
Confidence 002334566788999999999999999999999999999999999999987
Q ss_pred ---CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC----CCeEEEEEeeCCCCCcceEEEE
Q psy10778 415 ---CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE----LRITSVTFSNAPEGVSQNVIVT 486 (556)
Q Consensus 415 ---~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~----~~i~~i~~s~~pdg~~~~~l~t 486 (556)
. | .+.|.+++|+||+..+++++ .|.++++||+. .+++.++... .....+.|. . ..|++
T Consensus 230 ~~~a-H-kGsIfalsWsPDs~~~~T~S-----aDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWq---k----d~lIt 295 (603)
T KOG0318|consen 230 DSDA-H-KGSIFALSWSPDSTQFLTVS-----ADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQ---K----DHLIT 295 (603)
T ss_pred CCCC-c-cccEEEEEECCCCceEEEec-----CCceEEEEEeeccceEEEeecCCchhceEEEEEEe---C----CeEEE
Confidence 6 8 89999999999999999999 89999999998 7888887543 344455565 2 47899
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 487 GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 487 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
-+.+|.|.+++......+..+. +|...|++++.++|+++|++|+.||.|.-|+..++..-
T Consensus 296 VSl~G~in~ln~~d~~~~~~i~-GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~ 355 (603)
T KOG0318|consen 296 VSLSGTINYLNPSDPSVLKVIS-GHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSD 355 (603)
T ss_pred EEcCcEEEEecccCCChhheec-ccccceeEEEEcCCCCEEEeeccCceEEEEecCCcccc
Confidence 9999999999999999888888 99999999999999999999999999999999886544
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=3.1e-23 Score=220.44 Aligned_cols=229 Identities=17% Similarity=0.187 Sum_probs=205.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++..|+.|++|++|+..++..+..-..+|.+.|.++++..-+..+++|+.|.+++|||+.++ .+..++.+|
T Consensus 220 ~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg---------~C~~~l~gh 290 (537)
T KOG0274|consen 220 FFKSGSDDSTLHLWDLNNGYLILTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTG---------ECTHSLQGH 290 (537)
T ss_pred eEEecCCCceeEEeecccceEEEeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCC---------cEEEEecCC
Confidence 88899999999999999988777734499999999999877889999999999999999887 788999999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.|.++...+ ..+++||.|.+|++|++.++..+..+.+ | ..+|+++..+ +..+++|+ .|++|++||+.
T Consensus 291 ~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~~~l~l~~~-h-~~~V~~v~~~--~~~lvsgs-----~d~~v~VW~~~ 359 (537)
T KOG0274|consen 291 TSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNGACLNLLRG-H-TGPVNCVQLD--EPLLVSGS-----YDGTVKVWDPR 359 (537)
T ss_pred CceEEEEEccC--ceEeeccCCceEEEEeccCcceEEEecc-c-cccEEEEEec--CCEEEEEe-----cCceEEEEEhh
Confidence 99999998764 4788899999999999999999999998 8 9999999998 78999999 89999999998
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
++++.++. |..+|.++.+. .. ..+++|+.|+.|++||+.+. +++.++. +|..-+.++.+. +++|++++
T Consensus 360 ~~~cl~sl~gH~~~V~sl~~~--~~----~~~~Sgs~D~~IkvWdl~~~~~c~~tl~-~h~~~v~~l~~~--~~~Lvs~~ 430 (537)
T KOG0274|consen 360 TGKCLKSLSGHTGRVYSLIVD--SE----NRLLSGSLDTTIKVWDLRTKRKCIHTLQ-GHTSLVSSLLLR--DNFLVSSS 430 (537)
T ss_pred hceeeeeecCCcceEEEEEec--Cc----ceEEeeeeccceEeecCCchhhhhhhhc-CCcccccccccc--cceeEecc
Confidence 88888884 78999999887 43 48999999999999999999 8999998 788888666554 78999999
Q ss_pred CCCcEEEEEcCCCCCcCeeec
Q psy10778 532 TEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
.||.|++||..+++++.++..
T Consensus 431 aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 431 ADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred ccccEEEeecccCceeeeecc
Confidence 999999999999888777654
|
|
| >KOG0283|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.1e-23 Score=219.50 Aligned_cols=222 Identities=19% Similarity=0.205 Sum_probs=183.6
Q ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeecc---------------------------Cc----c-------
Q psy10778 319 IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA---------------------------ST----N------- 360 (556)
Q Consensus 319 ~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~---------------------------~~----~------- 360 (556)
+..+|.+.|.++.|++||++||+||.||.|+||.+.... .. +
T Consensus 262 ~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~~ 341 (712)
T KOG0283|consen 262 ISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSRK 341 (712)
T ss_pred cccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccccc
Confidence 333799999999999999999999999999999987600 00 0
Q ss_pred -----c--------ccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEE
Q psy10778 361 -----K--------IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTM 427 (556)
Q Consensus 361 -----~--------~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~ 427 (556)
. ....++++.+.||.+.|.+|.||.+ .+|+|+|.|.+|++|++.+.+++..+. | ..-|+||+|
T Consensus 342 ~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~--H-ndfVTcVaF 417 (712)
T KOG0283|consen 342 GSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS--H-NDFVTCVAF 417 (712)
T ss_pred ccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe--c-CCeeEEEEe
Confidence 0 0011677889999999999999975 489999999999999999999999998 5 899999999
Q ss_pred eC-CCCeEEEEeecCcCCCCeEEEEEeCCcEEEE-eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE
Q psy10778 428 SE-TNGEIASVLQTTKTGGSILRLHTINAQLITS-LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL 505 (556)
Q Consensus 428 sp-~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~-~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~ 505 (556)
+| |.+++++|+ -|+.|+||++....+.. .....-|+++||+ |+| +..++|+-+|.+++|+....+...
T Consensus 418 nPvDDryFiSGS-----LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~--PdG---k~avIGt~~G~C~fY~t~~lk~~~ 487 (712)
T KOG0283|consen 418 NPVDDRYFISGS-----LDGKVRLWSISDKKVVDWNDLRDLITAVCYS--PDG---KGAVIGTFNGYCRFYDTEGLKLVS 487 (712)
T ss_pred cccCCCcEeecc-----cccceEEeecCcCeeEeehhhhhhheeEEec--cCC---ceEEEEEeccEEEEEEccCCeEEE
Confidence 99 568999999 99999999997554444 4678999999999 899 899999999999999998887765
Q ss_pred EecC-CC------CCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCCcCeeeccc
Q psy10778 506 TLNT-NV------ALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNRTPKFLNLT 554 (556)
Q Consensus 506 ~~~~-~h------~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~ 554 (556)
.... .+ ...|+++.|.|.. ..|++.+.|.+|+|+|+++.+.+.+|+.+.
T Consensus 488 ~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~ 544 (712)
T KOG0283|consen 488 DFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFR 544 (712)
T ss_pred eeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcccc
Confidence 5432 11 2379999999744 457778899999999998888888887553
|
|
| >KOG0275|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=8.3e-24 Score=199.39 Aligned_cols=226 Identities=17% Similarity=0.177 Sum_probs=205.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++|+|+.||.|++|.+++|.++..+..+|..+|+|+.|+.|+..+.+++.|.++++.-+..+ ++++.++||
T Consensus 277 MlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSG---------K~LKEfrGH 347 (508)
T KOG0275|consen 277 MLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSG---------KCLKEFRGH 347 (508)
T ss_pred HhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccc---------hhHHHhcCc
Confidence 89999999999999999999999988899999999999999999999999999999999988 778899999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.+-|+...|.++|..++++|.||+|++|+..+.+++.+++....+.+|..+..-|. ...++++. ..++|++.++
T Consensus 348 sSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN-----rsntv~imn~ 422 (508)
T KOG0275|consen 348 SSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN-----RSNTVYIMNM 422 (508)
T ss_pred cccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc-----CCCeEEEEec
Confidence 99999999999999999999999999999999999988876221467888887775 45677776 8899999999
Q ss_pred CCcEEEEeec----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 454 NAQLITSLAS----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 454 ~g~~i~~~~~----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
.|+.++++.. .+...+++.+ |.| .++.+.++|+.++.+.+.+|++.+++. -|+..|..++-+|..+.+++
T Consensus 423 qGQvVrsfsSGkREgGdFi~~~lS--pkG---ewiYcigED~vlYCF~~~sG~LE~tl~-VhEkdvIGl~HHPHqNllAs 496 (508)
T KOG0275|consen 423 QGQVVRSFSSGKREGGDFINAILS--PKG---EWIYCIGEDGVLYCFSVLSGKLERTLP-VHEKDVIGLTHHPHQNLLAS 496 (508)
T ss_pred cceEEeeeccCCccCCceEEEEec--CCC---cEEEEEccCcEEEEEEeecCceeeeee-cccccccccccCcccchhhh
Confidence 9999999853 3566777888 899 899999999999999999999999998 78999999999999999999
Q ss_pred EcCCCcEEEEE
Q psy10778 530 SNTEGLVIIWE 540 (556)
Q Consensus 530 gs~Dg~V~vwd 540 (556)
-++||.+++|.
T Consensus 497 YsEDgllKLWk 507 (508)
T KOG0275|consen 497 YSEDGLLKLWK 507 (508)
T ss_pred hcccchhhhcC
Confidence 99999999994
|
|
| >KOG0274|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.8e-23 Score=219.00 Aligned_cols=225 Identities=20% Similarity=0.262 Sum_probs=198.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.|+.|.++++||..++.+...+. +|.+.|.|+...+ ..+++|+.|.+|++|++..+ ..+.++.+|
T Consensus 263 ~lvsgS~D~t~rvWd~~sg~C~~~l~-gh~stv~~~~~~~--~~~~sgs~D~tVkVW~v~n~---------~~l~l~~~h 330 (537)
T KOG0274|consen 263 KLVSGSTDKTERVWDCSTGECTHSLQ-GHTSSVRCLTIDP--FLLVSGSRDNTVKVWDVTNG---------ACLNLLRGH 330 (537)
T ss_pred EEEEEecCCcEEeEecCCCcEEEEec-CCCceEEEEEccC--ceEeeccCCceEEEEeccCc---------ceEEEeccc
Confidence 89999999999999999999999987 8999999988654 58889999999999999976 677888899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.++|.++..+ +.++++|+.||+|++||+.+++++.++.+ | ...|.++.+... ..+++|+ .|++|++||++
T Consensus 331 ~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~g-H-~~~V~sl~~~~~-~~~~Sgs-----~D~~IkvWdl~ 400 (537)
T KOG0274|consen 331 TGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSG-H-TGRVYSLIVDSE-NRLLSGS-----LDTTIKVWDLR 400 (537)
T ss_pred cccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecC-C-cceEEEEEecCc-ceEEeee-----eccceEeecCC
Confidence 9999999998 78999999999999999999999999999 9 999999988765 8899999 89999999998
Q ss_pred -C-cEEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 455 -A-QLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 455 -g-~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
. +++.++.+ .+-+.++.+. + ++|++++.||+|++||..++++++.+...|...|..+++. ...+++++
T Consensus 401 ~~~~c~~tl~~h~~~v~~l~~~----~---~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~~~~~~v~~l~~~--~~~il~s~ 471 (537)
T KOG0274|consen 401 TKRKCIHTLQGHTSLVSSLLLR----D---NFLVSSSADGTIKLWDAEEGECLRTLEGRHVGGVSALALG--KEEILCSS 471 (537)
T ss_pred chhhhhhhhcCCcccccccccc----c---ceeEeccccccEEEeecccCceeeeeccCCcccEEEeecC--cceEEEEe
Confidence 4 57777764 4555555544 4 7999999999999999999999999983366889988887 46788899
Q ss_pred CCCcEEEEEcCCCCCcCee
Q psy10778 532 TEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~ 550 (556)
.||.+.+||++++.....+
T Consensus 472 ~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 472 DDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred cCCeeEEEecccCchhhhh
Confidence 9999999999997776644
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.8e-23 Score=211.84 Aligned_cols=229 Identities=18% Similarity=0.172 Sum_probs=198.5
Q ss_pred eEEeccCCCeEEEEeCCCCCC------cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPA------TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~------~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
||.+|+.||+|++|+...... ...++ .|.+.|+.++...+|+.|+++|.|.+|++|+..... .-+.
T Consensus 39 yLfTgGRDg~i~~W~~~~d~~~~s~~~~asme-~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~-------~~c~ 110 (735)
T KOG0308|consen 39 YLFTGGRDGIIRLWSVTQDSNEPSTPYIASME-HHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN-------TFCM 110 (735)
T ss_pred eEEecCCCceEEEeccccccCCcccchhhhhh-hhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc-------chhH
Confidence 899999999999999864322 33333 699999999999999999999999999999987651 1356
Q ss_pred eEeeCCCccEEEEEE-ccCCCEEEEEcCCCcEEEEeCCCCeE--E--------EEeC-CCCCCCCeeEEEEeCCCCeEEE
Q psy10778 369 TILLGHSACVTDLYL-CAGFSVAVSSSEDGTCLLWDINTIGY--I--------REIP-CVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~-s~~~~~l~sgs~Dg~I~iwdl~~~~~--v--------~~l~-~~h~~~~V~~l~~sp~~~~i~s 436 (556)
.++..|++-|.|++. .++..++|||+-|+.|.+||++++.. + ..+. + + ..+|.+++.++.|..|++
T Consensus 111 stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG-~-k~siYSLA~N~t~t~ivs 188 (735)
T KOG0308|consen 111 STIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSG-P-KDSIYSLAMNQTGTIIVS 188 (735)
T ss_pred hhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCC-C-ccceeeeecCCcceEEEe
Confidence 788999999999999 77888999999999999999998732 2 2233 4 5 778999999999988888
Q ss_pred EeecCcCCCCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCC
Q psy10778 437 VLQTTKTGGSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALP 514 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~ 514 (556)
|+ ..+.+++||.+ .+.+....|...|.++..+ +|| ..++++++||+|++||+...+++.++. .|...
T Consensus 189 Gg-----tek~lr~wDprt~~kimkLrGHTdNVr~ll~~--dDG---t~~ls~sSDgtIrlWdLgqQrCl~T~~-vH~e~ 257 (735)
T KOG0308|consen 189 GG-----TEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVN--DDG---TRLLSASSDGTIRLWDLGQQRCLATYI-VHKEG 257 (735)
T ss_pred cC-----cccceEEeccccccceeeeeccccceEEEEEc--CCC---CeEeecCCCceEEeeeccccceeeeEE-eccCc
Confidence 88 89999999997 3445555789999999999 899 899999999999999999999999998 78999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
|+++..+|+-.++++|+.||.|..=|+.+.
T Consensus 258 VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 258 VWALQSSPSFTHVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred eEEEeeCCCcceEEecCCCCcEEecccCCc
Confidence 999999999999999999999999999984
|
|
| >KOG0277|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=2e-23 Score=191.37 Aligned_cols=225 Identities=17% Similarity=0.235 Sum_probs=184.9
Q ss_pred eEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+..++.||++++||... ...+..++ +|...|.++.|++. ++.++++|.|++|++|+.... ..++++.
T Consensus 75 ~~~~a~GDGSLrl~d~~~~s~Pi~~~k-EH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~---------~Sv~Tf~ 144 (311)
T KOG0277|consen 75 QVIAASGDGSLRLFDLTMPSKPIHKFK-EHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRP---------NSVQTFN 144 (311)
T ss_pred eEEEEecCceEEEeccCCCCcchhHHH-hhhhheEEeccccccceeEEeeccCCceEeecCCCC---------cceEeec
Confidence 677788999999999642 22344444 79999999999974 567888899999999998876 6678999
Q ss_pred CCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEE
Q psy10778 373 GHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 373 ~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~i 450 (556)
||...|...+|+| ..++++++|.||++++||++.......+.. | ...|.++.|+.-. ..+++++ .|+.|+.
T Consensus 145 gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~a-h-~~Eil~cdw~ky~~~vl~Tg~-----vd~~vr~ 217 (311)
T KOG0277|consen 145 GHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEA-H-NSEILCCDWSKYNHNVLATGG-----VDNLVRG 217 (311)
T ss_pred CCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEe-c-cceeEeecccccCCcEEEecC-----CCceEEE
Confidence 9999999999999 457999999999999999987544444888 8 8899999999754 4566666 8999999
Q ss_pred EEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEec-CCC
Q psy10778 451 HTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSC-DSQ 525 (556)
Q Consensus 451 wdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~-dg~ 525 (556)
||++ ..++..+ .|.-.|+.++||| ... .+|++++.|-+++|||..... .+.+.. .|..-+..+.||+ +..
T Consensus 218 wDir~~r~pl~eL~gh~~AVRkvk~Sp--h~~--~lLaSasYDmT~riw~~~~~ds~~e~~~-~HtEFv~g~Dws~~~~~ 292 (311)
T KOG0277|consen 218 WDIRNLRTPLFELNGHGLAVRKVKFSP--HHA--SLLASASYDMTVRIWDPERQDSAIETVD-HHTEFVCGLDWSLFDPG 292 (311)
T ss_pred EehhhccccceeecCCceEEEEEecCc--chh--hHhhhccccceEEecccccchhhhhhhh-ccceEEeccccccccCc
Confidence 9997 4556655 4677999999994 332 699999999999999987444 455555 7888899999998 568
Q ss_pred EEEEEcCCCcEEEEEc
Q psy10778 526 HLYASNTEGLVIIWES 541 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl 541 (556)
.+++++-|+.++||+.
T Consensus 293 ~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 293 QVASTGWDELLYVWNP 308 (311)
T ss_pred eeeecccccceeeecc
Confidence 8999999999999984
|
|
| >KOG0643|consensus | Back alignment and domain information |
|---|
Probab=99.91 E-value=9.8e-23 Score=188.04 Aligned_cols=243 Identities=11% Similarity=0.110 Sum_probs=193.2
Q ss_pred cccccccCCcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEEeeeccC
Q psy10778 284 SSLNVIGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-----SGNILVYEYELNAS 358 (556)
Q Consensus 284 ~~~~~~~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-----Dg~I~vwd~~~~~~ 358 (556)
-+.++.|.. ..+.+|+.|.+++|||+++|+.+..+. -..+|..+.|+.+|++++.... .+.|.++|++....
T Consensus 56 W~~Did~~s-~~liTGSAD~t~kLWDv~tGk~la~~k--~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 56 WCCDIDWDS-KHLITGSADQTAKLWDVETGKQLATWK--TNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred EEEEecCCc-ceeeeccccceeEEEEcCCCcEEEEee--cCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 344454432 378899999999999999999888875 5678999999999998877653 36799999885432
Q ss_pred cccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEE
Q psy10778 359 TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
.....++...+..+.+.++.+-|.|-++.|++|.+||.|.+||+++|+ .+..... | ...|+.++++++..+++++
T Consensus 133 --~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~-h-~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 133 --DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEE-H-SSKINDLQFSRDRTYFITG 208 (327)
T ss_pred --hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhh-h-ccccccccccCCcceEEec
Confidence 122226678888899999999999999999999999999999999985 4555566 8 8999999999999999999
Q ss_pred eecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC-eEE------------EEeCCCCeE
Q psy10778 438 LQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG-TIQ------------LWSGYKLAH 503 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg-~I~------------iwd~~~~~~ 503 (556)
+ .|.+.++||.. -+++.++....++++.+++ |-.. .+++.|+.+. .|. +|++-..+.
T Consensus 209 s-----~Dttakl~D~~tl~v~Kty~te~PvN~aais--P~~d--~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEE 279 (327)
T KOG0643|consen 209 S-----KDTTAKLVDVRTLEVLKTYTTERPVNTAAIS--PLLD--HVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEE 279 (327)
T ss_pred c-----cCccceeeeccceeeEEEeeecccccceecc--cccc--eEEecCCceeeeeeeecccccchhhhHHHHHHHHH
Confidence 9 99999999998 6788888999999999999 5441 3444444332 122 222222334
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 504 LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 504 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..+. +|-++|++++|+|+|+..++|++||.|++.-...
T Consensus 280 igrvk-GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 280 IGRVK-GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hcccc-ccccCcceeEECCCCcccccCCCCceEEEEEecc
Confidence 55566 8999999999999999999999999999987654
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.91 E-value=4.6e-22 Score=211.11 Aligned_cols=212 Identities=12% Similarity=0.051 Sum_probs=170.8
Q ss_pred eEEeccCCCeEEEEeCCCCC-------CcceEcCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELP-------ATPVIRPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-------~~~~~~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
+|++|+.|++|++|++.++. .+..+ .+|...|.+++|+|++ .+|++|+.|++|+|||+..+ +
T Consensus 90 ~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L-~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg---------~ 159 (493)
T PTZ00421 90 KLFTASEDGTIMGWGIPEEGLTQNISDPIVHL-QGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERG---------K 159 (493)
T ss_pred EEEEEeCCCEEEEEecCCCccccccCcceEEe-cCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCC---------e
Confidence 89999999999999987542 22233 3799999999999985 69999999999999999876 4
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-CeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT-PVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~-~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
.+..+.+|...|.+++|+|++.+|++++.||+|++||+++++.+.++.. | .+ .+..+.|.+++..+++++.+. +.+
T Consensus 160 ~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~-H-~~~~~~~~~w~~~~~~ivt~G~s~-s~D 236 (493)
T PTZ00421 160 AVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEA-H-ASAKSQRCLWAKRKDLIITLGCSK-SQQ 236 (493)
T ss_pred EEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEec-C-CCCcceEEEEcCCCCeEEEEecCC-CCC
Confidence 5577889999999999999999999999999999999999999999888 7 54 355788999888888765211 157
Q ss_pred CeEEEEEeC--CcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 446 SILRLHTIN--AQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 446 ~~I~iwdi~--g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
+.|++||++ ...+.... ....+....|+ +++ ++|++|+ .||.|++||+.+++.+......+..++.+++|
T Consensus 237 r~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d--~d~---~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~ 311 (493)
T PTZ00421 237 RQIMLWDTRKMASPYSTVDLDQSSALFIPFFD--EDT---NLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCM 311 (493)
T ss_pred CeEEEEeCCCCCCceeEeccCCCCceEEEEEc--CCC---CEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEe
Confidence 899999997 34444433 23455566777 788 7888776 59999999999998877765445678899999
Q ss_pred ecCC
Q psy10778 521 SCDS 524 (556)
Q Consensus 521 s~dg 524 (556)
.|.-
T Consensus 312 ~pk~ 315 (493)
T PTZ00421 312 MPKW 315 (493)
T ss_pred cccc
Confidence 9853
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=200.23 Aligned_cols=234 Identities=16% Similarity=0.237 Sum_probs=195.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.-..-..|.+|.......... ..--.+.|.|++-+|+|.+|+.|+..|.+++|.+.++ ..+..+.+|
T Consensus 53 llsaq~~rp~l~vw~i~k~~~~~q-~~v~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG---------~LL~v~~aH 122 (476)
T KOG0646|consen 53 LLSAQLKRPLLHVWEILKKDQVVQ-YIVLPGPVHALASSNLGYFLLAGTISGNLYLWELSSG---------ILLNVLSAH 122 (476)
T ss_pred eeeecccCccccccccCchhhhhh-hcccccceeeeecCCCceEEEeecccCcEEEEEeccc---------cHHHHHHhh
Confidence 444445556888898765433321 1234678999999999999999999999999999998 677888999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCC---------CeEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINT---------IGYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKT 443 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~---------~~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~ 443 (556)
-..|+|+.|+-||.+++|||+||.|.+|++.+ -++++.+.. | .-+|+.+.+.+. ..++++++
T Consensus 123 YQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~-H-tlsITDl~ig~Gg~~~rl~TaS----- 195 (476)
T KOG0646|consen 123 YQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSD-H-TLSITDLQIGSGGTNARLYTAS----- 195 (476)
T ss_pred ccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeecc-C-cceeEEEEecCCCccceEEEec-----
Confidence 99999999999999999999999999998743 356778888 9 899999998875 46889998
Q ss_pred CCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe----------------EEEE
Q psy10778 444 GGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA----------------HLLT 506 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~----------------~~~~ 506 (556)
.|.++++||+. |.++.++..+..+.+++.+ |.. +.+.+|+++|.|.+.++.... .+..
T Consensus 196 ~D~t~k~wdlS~g~LLlti~fp~si~av~lD--pae---~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~ 270 (476)
T KOG0646|consen 196 EDRTIKLWDLSLGVLLLTITFPSSIKAVALD--PAE---RVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINV 270 (476)
T ss_pred CCceEEEEEeccceeeEEEecCCcceeEEEc--ccc---cEEEecCCcceEEeeehhcCCcccccccccccccccceeee
Confidence 99999999997 8999999999999999999 777 899999999999998774322 3334
Q ss_pred ecCCCCC--CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 507 LNTNVAL--PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 507 ~~~~h~~--~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+. +|.+ +|+|++.+-||..|++|+.||.|+|||+.+...+.++.
T Consensus 271 ~~-Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 271 LV-GHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred ec-cccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 44 6776 99999999999999999999999999999877665544
|
|
| >KOG0292|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.9e-22 Score=211.54 Aligned_cols=226 Identities=16% Similarity=0.154 Sum_probs=197.7
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+++++|+.|-.|++|+.++.+++..+. +|.+-|+.+.|++.-.+++++|.|.+|+||+..+. +++..+.|
T Consensus 64 plFVSGGDDykIkVWnYk~rrclftL~-GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr---------~~iavltG 133 (1202)
T KOG0292|consen 64 PLFVSGGDDYKIKVWNYKTRRCLFTLL-GHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSR---------KCIAVLTG 133 (1202)
T ss_pred CeEEecCCccEEEEEecccceehhhhc-cccceeEEeeccCCCceEEEccCCCeEEEEeccCC---------ceEEEEec
Confidence 499999999999999999999888876 99999999999999999999999999999999987 78899999
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-----------------------------EEEEeCCCCCCCCeeE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-----------------------------YIREIPCVDPNTPVSH 424 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-----------------------------~v~~l~~~h~~~~V~~ 424 (556)
|..-|.|..|+|...+++|+|-|.+|+|||+.-.+ ....+++ | +..|+-
T Consensus 134 HnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEG-H-DRGVNw 211 (1202)
T KOG0292|consen 134 HNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEG-H-DRGVNW 211 (1202)
T ss_pred CceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecc-c-ccccce
Confidence 99999999999999999999999999999985210 1134667 8 889999
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe----ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL----ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~----~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
++|+|.-..|++|+ .|+.|++|..+....... .|...|.++-|+ |.. +++++.++|++|++||+..
T Consensus 212 aAfhpTlpliVSG~-----DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfh--p~q---~lIlSnsEDksirVwDm~k 281 (1202)
T KOG0292|consen 212 AAFHPTLPLIVSGA-----DDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFH--PHQ---DLILSNSEDKSIRVWDMTK 281 (1202)
T ss_pred EEecCCcceEEecC-----CcceeeEEEeccccceeehhhhcccCCcceEEec--Ccc---ceeEecCCCccEEEEeccc
Confidence 99999999999999 899999999984433333 477899999999 777 8999999999999999999
Q ss_pred CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+.+.++. .....-+.++-+|..+++++|- |+-+.|+.++.
T Consensus 282 Rt~v~tfr-rendRFW~laahP~lNLfAAgH-DsGm~VFkleR 322 (1202)
T KOG0292|consen 282 RTSVQTFR-RENDRFWILAAHPELNLFAAGH-DSGMIVFKLER 322 (1202)
T ss_pred ccceeeee-ccCCeEEEEEecCCcceeeeec-CCceEEEEEcc
Confidence 99999997 3468899999999998777655 55566777753
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-22 Score=188.22 Aligned_cols=229 Identities=10% Similarity=0.143 Sum_probs=183.4
Q ss_pred eEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+++.||+||+||+|+++. +.........|.++|.+++|+.||..+++|+.|+.+++||+.++ .+..+..
T Consensus 42 ~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~----------Q~~~v~~ 111 (347)
T KOG0647|consen 42 LLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG----------QVSQVAA 111 (347)
T ss_pred eEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC----------Ceeeeee
Confidence 888999999999999986 56666655679999999999999999999999999999999986 3467888
Q ss_pred CCccEEEEEEccCCC--EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFS--VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
|.++|.++.|-+... .|++||.|.+|+.||+++..++.++.. ...+.++.+- ...++++. .++.|.+|
T Consensus 112 Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L---PeRvYa~Dv~--~pm~vVat-----a~r~i~vy 181 (347)
T KOG0647|consen 112 HDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL---PERVYAADVL--YPMAVVAT-----AERHIAVY 181 (347)
T ss_pred cccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec---cceeeehhcc--CceeEEEe-----cCCcEEEE
Confidence 999999999987655 899999999999999999999999887 5667766554 34566666 78999999
Q ss_pred EeCCcEE--EEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecCCCC---------CCeE
Q psy10778 452 TINAQLI--TSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNTNVA---------LPVI 516 (556)
Q Consensus 452 di~g~~i--~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~~h~---------~~V~ 516 (556)
++++... +.. ...-.++|++.. ++. ...+.|+-+|.+.+..+..+ +.-.++. .|. -+|.
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f--~d~---~~~alGsiEGrv~iq~id~~~~~~nFtFk-CHR~~~~~~~~VYaVN 255 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACF--QDK---DGFALGSIEGRVAIQYIDDPNPKDNFTFK-CHRSTNSVNDDVYAVN 255 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEE--ecC---CceEeeeecceEEEEecCCCCccCceeEE-EeccCCCCCCceEEec
Confidence 9963322 222 235578999988 454 34599999999999988776 3223333 232 2578
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 517 AVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
+|+|+|....|++++.||+...||-..+.++..
T Consensus 256 si~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~ 288 (347)
T KOG0647|consen 256 SIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKT 288 (347)
T ss_pred ceEeecccceEEEecCCceEEEecchhhhhhhc
Confidence 899999999999999999999999877555433
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.3e-22 Score=218.57 Aligned_cols=241 Identities=18% Similarity=0.244 Sum_probs=194.4
Q ss_pred eEEecc--CCCeEEEEeCCCC------------CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeecc---
Q psy10778 295 MICWNE--CDNLIRLKMSKEL------------PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA--- 357 (556)
Q Consensus 295 ~l~~gs--~Dg~I~lw~~~~~------------~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~--- 357 (556)
.+++|+ .||.+++|+.+.- +.+... ..|.+.|+|+.|++||++||+|++|+.|.||......
T Consensus 27 ~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m-~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~ 105 (942)
T KOG0973|consen 27 KFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTM-DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGT 105 (942)
T ss_pred eEecCCccccccceeeccccccchhhhhhcccchhheee-ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcc
Confidence 577888 8999999987521 112222 2699999999999999999999999999999988310
Q ss_pred ---C---cccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC
Q psy10778 358 ---S---TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN 431 (556)
Q Consensus 358 ---~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~ 431 (556)
. ......++.+..+.+|.+.|..++|+|++.++++++.|++|.||+..+.+.+..+.+ | .+.|..+.|+|-|
T Consensus 106 ~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~-H-~s~VKGvs~DP~G 183 (942)
T KOG0973|consen 106 VFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRG-H-QSLVKGVSWDPIG 183 (942)
T ss_pred cccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeec-c-cccccceEECCcc
Confidence 1 112233467788999999999999999999999999999999999999999999999 9 9999999999999
Q ss_pred CeEEEEeecCcCCCCeEEEEEeCC-c-----------------------------------------EEE----------
Q psy10778 432 GEIASVLQTTKTGGSILRLHTINA-Q-----------------------------------------LIT---------- 459 (556)
Q Consensus 432 ~~i~s~s~~~~~~d~~I~iwdi~g-~-----------------------------------------~i~---------- 459 (556)
++||+-+ .|++|++|++.. . .+.
T Consensus 184 ky~ASqs-----dDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~ 258 (942)
T KOG0973|consen 184 KYFASQS-----DDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD 258 (942)
T ss_pred Ceeeeec-----CCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee
Confidence 9999999 899999998531 0 000
Q ss_pred --EeecCCCeEEEEEeeC------CCCCc------ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 460 --SLASELRITSVTFSNA------PEGVS------QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 460 --~~~~~~~i~~i~~s~~------pdg~~------~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
-+.|..++.+++|+|. .+|.. ..++|+|+.|++|.||.....+++..+..-....|..++|+|||.
T Consensus 259 ~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 259 KDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGF 338 (942)
T ss_pred eeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCC
Confidence 0125667888888841 11110 127899999999999998777776665533468899999999999
Q ss_pred EEEEEcCCCcEEEEEcCC
Q psy10778 526 HLYASNTEGLVIIWESSS 543 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl~~ 543 (556)
.|++++.||+|.+..++.
T Consensus 339 ~LfacS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 339 SLFACSLDGTVALIHFEE 356 (942)
T ss_pred eEEEEecCCeEEEEEcch
Confidence 999999999999999877
|
|
| >KOG0310|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.6e-22 Score=200.65 Aligned_cols=224 Identities=17% Similarity=0.198 Sum_probs=188.2
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
.-.+.+|+..+......+. ...+.|.++.|..||++|++|...|.|+|+|+.+. ..++.+.+|..+|..+
T Consensus 47 S~rvqly~~~~~~~~k~~s-rFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r---------~iLR~~~ah~apv~~~ 116 (487)
T KOG0310|consen 47 SVRVQLYSSVTRSVRKTFS-RFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSR---------VILRQLYAHQAPVHVT 116 (487)
T ss_pred ccEEEEEecchhhhhhhHH-hhccceeEEEeecCCeEEEccCCcCcEEEeccccH---------HHHHHHhhccCceeEE
Confidence 3567788877665554433 45678999999999999999999999999996653 3457889999999999
Q ss_pred EEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEEEeC--CcE
Q psy10778 382 YLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLHTIN--AQL 457 (556)
Q Consensus 382 ~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iwdi~--g~~ 457 (556)
.|+|.+ ..+++|++|+.+++||+.+......+.+ | ...|++.+|+|... .+++|+ .||.|++||++ +..
T Consensus 117 ~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~-h-tDYVR~g~~~~~~~hivvtGs-----YDg~vrl~DtR~~~~~ 189 (487)
T KOG0310|consen 117 KFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSG-H-TDYVRCGDISPANDHIVVTGS-----YDGKVRLWDTRSLTSR 189 (487)
T ss_pred EecccCCeEEEecCCCceEEEEEcCCcEEEEEecC-C-cceeEeeccccCCCeEEEecC-----CCceEEEEEeccCCce
Confidence 999955 5788999999999999999887668888 9 99999999999866 556666 99999999998 578
Q ss_pred EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 458 i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
+.++.|..+|.++.+- |.| ..+++++. ..|++||+.+|. .+.... .|...|||+.+..+++.|++|+-||.|
T Consensus 190 v~elnhg~pVe~vl~l--psg---s~iasAgG-n~vkVWDl~~G~qll~~~~-~H~KtVTcL~l~s~~~rLlS~sLD~~V 262 (487)
T KOG0310|consen 190 VVELNHGCPVESVLAL--PSG---SLIASAGG-NSVKVWDLTTGGQLLTSMF-NHNKTVTCLRLASDSTRLLSGSLDRHV 262 (487)
T ss_pred eEEecCCCceeeEEEc--CCC---CEEEEcCC-CeEEEEEecCCceehhhhh-cccceEEEEEeecCCceEeecccccce
Confidence 8899999999999999 887 68888774 689999998554 455554 589999999999999999999999999
Q ss_pred EEEEcCCCCCcCe
Q psy10778 537 IIWESSSHNRTPK 549 (556)
Q Consensus 537 ~vwdl~~~~~~~~ 549 (556)
++||+.+.+.+..
T Consensus 263 KVfd~t~~Kvv~s 275 (487)
T KOG0310|consen 263 KVFDTTNYKVVHS 275 (487)
T ss_pred EEEEccceEEEEe
Confidence 9999877555443
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=1.7e-22 Score=190.23 Aligned_cols=235 Identities=17% Similarity=0.205 Sum_probs=201.4
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc---------c--
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN---------K-- 361 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~---------~-- 361 (556)
.+++.+++.|.+.++|.++++.++..+. +|.+.|+++.|++.+.++++|+.|++-.||....+-..+ .
T Consensus 160 qpi~gtASADhTA~iWs~Esg~CL~~Y~-GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEe 238 (481)
T KOG0300|consen 160 QPICGTASADHTARIWSLESGACLATYT-GHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEE 238 (481)
T ss_pred CcceeecccccceeEEeeccccceeeec-ccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchh
Confidence 3488899999999999999999998887 999999999999999999999999999999832110000 0
Q ss_pred c--------------------cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC
Q psy10778 362 I--------------------EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP 421 (556)
Q Consensus 362 ~--------------------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~ 421 (556)
. .--.++..+.+|.+.|.+..|-..|+.++++|.|.+..+||+++++.+..+.+ | ...
T Consensus 239 E~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtG-H-d~E 316 (481)
T KOG0300|consen 239 EEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTG-H-DSE 316 (481)
T ss_pred hhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccC-c-chh
Confidence 0 00035678899999999999999999999999999999999999999999999 9 999
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC--cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTINA--QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g--~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
.+.++-+|..+.+++.+ .|.+.++||.+. ..+..+ .|...|+++.|. .+ ..+++|+.|.+|++||+
T Consensus 317 LtHcstHptQrLVvTsS-----rDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~--~d----d~vVSgSDDrTvKvWdL 385 (481)
T KOG0300|consen 317 LTHCSTHPTQRLVVTSS-----RDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFN--TD----DRVVSGSDDRTVKVWDL 385 (481)
T ss_pred ccccccCCcceEEEEec-----cCceeEeccchhhcceeeeecccccceeEEEEe--cC----CceeecCCCceEEEeee
Confidence 99999999988888888 999999999982 334444 478999999999 55 47999999999999999
Q ss_pred CCCe-EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 499 YKLA-HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 499 ~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
++.. ++.++. ..+++..++.+..+..++.--.+..|++||+..
T Consensus 386 rNMRsplATIR--tdS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG 429 (481)
T KOG0300|consen 386 RNMRSPLATIR--TDSPANRVAVSKGHPIIAIPHDNRQVRLFDLNG 429 (481)
T ss_pred ccccCcceeee--cCCccceeEeecCCceEEeccCCceEEEEecCC
Confidence 8764 677786 468999999998888998888889999999976
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.1e-22 Score=197.26 Aligned_cols=201 Identities=20% Similarity=0.264 Sum_probs=178.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.|...+.+++.++||++||+|+.|..|.||+.++. ++++.+.+|.+.|.+++|-.....+++++.|+++++
T Consensus 200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~---------ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkv 270 (479)
T KOG0299|consen 200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTL---------EHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKV 270 (479)
T ss_pred cccceeEEEEEcCCCcEEEecCCCceEEEecCccc---------chhhcccccccceeeeeeecCccceeeeecCCceEE
Confidence 68889999999999999999999999999999987 778889999999999999988889999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE-EEEeecCCCeEEEEEeeCCCCCc
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL-ITSLASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~-i~~~~~~~~i~~i~~s~~pdg~~ 480 (556)
|++....++.++.+ | ...|..|....-++.+-+|+ .|+++++|++..+. +.-..+.+.+-|++|- .+
T Consensus 271 w~~~~~s~vetlyG-H-qd~v~~IdaL~reR~vtVGg-----rDrT~rlwKi~eesqlifrg~~~sidcv~~I--n~--- 338 (479)
T KOG0299|consen 271 WSIDQLSYVETLYG-H-QDGVLGIDALSRERCVTVGG-----RDRTVRLWKIPEESQLIFRGGEGSIDCVAFI--ND--- 338 (479)
T ss_pred EehhHhHHHHHHhC-C-ccceeeechhcccceEEecc-----ccceeEEEeccccceeeeeCCCCCeeeEEEe--cc---
Confidence 99999999999999 9 99999999888777777777 89999999996332 2223467799999998 45
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-----------ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-----------~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
..+++|+.+|.|.+|++...+++.+....| ...|++++..|...++++|+.+|+|++|.+.++
T Consensus 339 -~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 339 -EHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred -cceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 589999999999999999999888776544 127999999999999999999999999999886
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-22 Score=193.20 Aligned_cols=225 Identities=17% Similarity=0.180 Sum_probs=198.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+.+|+.|..+.++|..+++.+.++. +|...|+.+.++++...+++++.|..|+||..... ........|
T Consensus 233 ~ilTGG~d~~av~~d~~s~q~l~~~~-Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~---------s~~~~~~~h 302 (506)
T KOG0289|consen 233 KILTGGEDKTAVLFDKPSNQILATLK-GHTKKITSVKFHKDLDTVITASADEIIRVWSVPLS---------SEPTSSRPH 302 (506)
T ss_pred cceecCCCCceEEEecchhhhhhhcc-CcceEEEEEEeccchhheeecCCcceEEeeccccc---------cCccccccc
Confidence 78899999999999999999888887 99999999999999999999999999999998865 345677899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
..+|+.+..+|.|.++++++.||+....|++++..+...... . .-.+++.+|+|||..+.+|. .|+.|++||+
T Consensus 303 ~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s-~v~~ts~~fHpDgLifgtgt-----~d~~vkiwdl 376 (506)
T KOG0289|consen 303 EEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETS-DVEYTSAAFHPDGLIFGTGT-----PDGVVKIWDL 376 (506)
T ss_pred cccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccc-cceeEEeeEcCCceEEeccC-----CCceEEEEEc
Confidence 999999999999999999999999999999999877665430 1 35689999999999999999 9999999999
Q ss_pred C-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 454 N-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 454 ~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
. +..+..+ .|.++|..++|+ .+| .+|++++.|+.|++||++..+...++......++.++.|...|++|+.++
T Consensus 377 ks~~~~a~Fpght~~vk~i~Fs--ENG---Y~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g 451 (506)
T KOG0289|consen 377 KSQTNVAKFPGHTGPVKAISFS--ENG---YWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAG 451 (506)
T ss_pred CCccccccCCCCCCceeEEEec--cCc---eEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeec
Confidence 7 5556666 478999999999 899 89999999999999999999988888754455799999999999999997
Q ss_pred CCCcEEEEE
Q psy10778 532 TEGLVIIWE 540 (556)
Q Consensus 532 ~Dg~V~vwd 540 (556)
.|=.|++++
T Consensus 452 ~~l~Vy~~~ 460 (506)
T KOG0289|consen 452 SDLQVYICK 460 (506)
T ss_pred ceeEEEEEe
Confidence 776666555
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.9e-22 Score=195.88 Aligned_cols=235 Identities=15% Similarity=0.231 Sum_probs=187.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce---------EcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV---------IRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~---------~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
++|+++..+.+.|||..+..-... ...+|.+.-..++|++. ...|++|+.|++|++||+.......+..
T Consensus 139 iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~- 217 (422)
T KOG0264|consen 139 IVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVV- 217 (422)
T ss_pred EEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccc-
Confidence 899999999999999864322211 22378876778999975 4579999999999999998764432222
Q ss_pred cCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCCeeEEEEeCCCCe-EEEEeec
Q psy10778 365 CKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDIN--TIGYIREIPCVDPNTPVSHVTMSETNGE-IASVLQT 440 (556)
Q Consensus 365 ~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~--~~~~v~~l~~~h~~~~V~~l~~sp~~~~-i~s~s~~ 440 (556)
.+...+.+|.+.|..++|++- ..++++++.|+.+.|||++ +.+....... | .++|.|++|+|-+.. ||+++
T Consensus 218 -~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~a-h-~~~vn~~~fnp~~~~ilAT~S-- 292 (422)
T KOG0264|consen 218 -DPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKA-H-SAEVNCVAFNPFNEFILATGS-- 292 (422)
T ss_pred -cceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccc-c-CCceeEEEeCCCCCceEEecc--
Confidence 567789999999999999984 4589999999999999999 4556667777 9 999999999997665 55555
Q ss_pred CcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--------------E
Q psy10778 441 TKTGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--------------H 503 (556)
Q Consensus 441 ~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--------------~ 503 (556)
.|++|.+||++ .+.+.++ .|...|.++.|+|..+ .+|++++.|+.+.+||+.... +
T Consensus 293 ---~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~e----tvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEl 365 (422)
T KOG0264|consen 293 ---ADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNE----TVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPEL 365 (422)
T ss_pred ---CCCcEEEeechhcccCceeccCCCcceEEEEeCCCCC----ceeEecccCCcEEEEeccccccccChhhhccCCcce
Confidence 89999999997 4555555 5789999999995333 699999999999999984321 2
Q ss_pred EEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCC
Q psy10778 504 LLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 504 ~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..-. ||...|..+.|+|+. ..|++.++|+.+.||++..
T Consensus 366 lF~Hg-GH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 366 LFIHG-GHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eEEec-CcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 23333 899999999999987 5677899999999999874
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.8e-22 Score=181.27 Aligned_cols=232 Identities=13% Similarity=0.164 Sum_probs=196.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce-EcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV-IRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~-~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+++|+.|+++++|+++..+.... ...+|.+.|-.++|.|. ...+++++.|.+|++||...+ ++.....
T Consensus 34 ~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~---------k~~~~i~ 104 (313)
T KOG1407|consen 34 KLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG---------KCTARIE 104 (313)
T ss_pred eeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC---------cEEEEee
Confidence 799999999999999987644332 22379999999999974 678999999999999999987 5555555
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.....+ -+.|+|+|.+++.+++|..|...|.++.+.+...+. ...+..++|+.++..++... ..|.|.|..
T Consensus 105 ~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~---~~e~ne~~w~~~nd~Fflt~-----GlG~v~ILs 175 (313)
T KOG1407|consen 105 TKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQF---KFEVNEISWNNSNDLFFLTN-----GLGCVEILS 175 (313)
T ss_pred ccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhcc---cceeeeeeecCCCCEEEEec-----CCceEEEEe
Confidence 444444 478999999999999999999999998877776665 67789999998777777766 679999988
Q ss_pred eC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 453 IN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 453 i~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
.- -+++.++ .|.....||.|+ |+| +++|+|+.|..+.+||+...-+++.+. .++-+|+.+.||.||++|++|
T Consensus 176 ypsLkpv~si~AH~snCicI~f~--p~G---ryfA~GsADAlvSLWD~~ELiC~R~is-RldwpVRTlSFS~dg~~lASa 249 (313)
T KOG1407|consen 176 YPSLKPVQSIKAHPSNCICIEFD--PDG---RYFATGSADALVSLWDVDELICERCIS-RLDWPVRTLSFSHDGRMLASA 249 (313)
T ss_pred ccccccccccccCCcceEEEEEC--CCC---ceEeeccccceeeccChhHhhhheeec-cccCceEEEEeccCcceeecc
Confidence 75 5666666 478889999999 999 999999999999999999999999998 789999999999999999999
Q ss_pred cCCCcEEEEEcCCCCCcCee
Q psy10778 531 NTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~~~~~ 550 (556)
++|..|-|=+++++.++..+
T Consensus 250 SEDh~IDIA~vetGd~~~eI 269 (313)
T KOG1407|consen 250 SEDHFIDIAEVETGDRVWEI 269 (313)
T ss_pred CccceEEeEecccCCeEEEe
Confidence 99999999888888776544
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.1e-22 Score=205.52 Aligned_cols=228 Identities=18% Similarity=0.221 Sum_probs=186.7
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceE------------------------------------cCCCCCceEEEEEcCCCC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVI------------------------------------RPPLGATIATATTAPDCH 337 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~------------------------------------~~~h~~~V~~i~~s~dg~ 337 (556)
+.+.+++.|++||+|+++.+....++ .....-+++|++.+|+|+
T Consensus 393 ~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gq 472 (1080)
T KOG1408|consen 393 GCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQ 472 (1080)
T ss_pred cceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcc
Confidence 37888999999999999752111110 001245799999999999
Q ss_pred EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC---CCEEEEEcCCCcEEEEeCCCC-eEEEEe
Q psy10778 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG---FSVAVSSSEDGTCLLWDINTI-GYIREI 413 (556)
Q Consensus 338 ~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iwdl~~~-~~v~~l 413 (556)
+||+|..-|+++||++... +....+.+|.++|.|+.++-. .++|++++.|..|.|+|+.+. .+++++
T Consensus 473 hLAsGDr~GnlrVy~Lq~l---------~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtl 543 (1080)
T KOG1408|consen 473 HLASGDRGGNLRVYDLQEL---------EYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTL 543 (1080)
T ss_pred eecccCccCceEEEEehhh---------hhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhh
Confidence 9999999999999999865 566788999999999999863 468999999999999998643 223333
Q ss_pred CCCCCCCC-------------------------------------------------eeEEEEeCCCCeEEEEeecCcCC
Q psy10778 414 PCVDPNTP-------------------------------------------------VSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 414 ~~~h~~~~-------------------------------------------------V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
.+ | .+. +..|++.|..+++++++ .
T Consensus 544 d~-H-SssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~c-----Q 616 (1080)
T KOG1408|consen 544 DG-H-SSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVC-----Q 616 (1080)
T ss_pred cc-c-ccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEe-----c
Confidence 33 3 333 44556666666777777 8
Q ss_pred CCeEEEEEeC-CcEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 445 GSILRLHTIN-AQLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 445 d~~I~iwdi~-g~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
|..|+||++. |+..+.++ +++....+... |.| .+|++...|.++.++|..+++++.+.. +|...|+.+.
T Consensus 617 Drnirif~i~sgKq~k~FKgs~~~eG~lIKv~lD--PSg---iY~atScsdktl~~~Df~sgEcvA~m~-GHsE~VTG~k 690 (1080)
T KOG1408|consen 617 DRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILD--PSG---IYLATSCSDKTLCFVDFVSGECVAQMT-GHSEAVTGVK 690 (1080)
T ss_pred ccceEEEeccccceeeeecccccCCCceEEEEEC--CCc---cEEEEeecCCceEEEEeccchhhhhhc-Ccchheeeee
Confidence 9999999997 89988885 34677777777 999 899999999999999999999999998 8999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 520 YSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|++|.++|++.+.||+|.||.++.
T Consensus 691 F~nDCkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 691 FLNDCKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred ecccchhheeecCCceEEEEECch
Confidence 999999999999999999999876
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1e-22 Score=195.02 Aligned_cols=238 Identities=12% Similarity=0.175 Sum_probs=193.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc---------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAST--------------- 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~--------------- 359 (556)
.+++|+.||.|++||+.+..+...+. .|.+.|..+++.. ..+++++.|.+|+.|.++.....
T Consensus 81 ~~aSGs~DG~VkiWnlsqR~~~~~f~-AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~ 157 (433)
T KOG0268|consen 81 TVASGSCDGEVKIWNLSQRECIRTFK-AHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHR 157 (433)
T ss_pred hhhccccCceEEEEehhhhhhhheee-cccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeecccccccccccc
Confidence 68899999999999999988888887 8999999999987 67889999999999985532100
Q ss_pred --------c------cccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeE
Q psy10778 360 --------N------KIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSH 424 (556)
Q Consensus 360 --------~------~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~ 424 (556)
+ ......+++.+.--.+.|.++.|+|- ..+|+++..|++|.++|++++.+++.+.. ...-+.
T Consensus 158 ~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~---~mRTN~ 234 (433)
T KOG0268|consen 158 KNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVIL---TMRTNT 234 (433)
T ss_pred ccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeee---eccccc
Confidence 0 00011456666667778899999984 45888888999999999999999888776 677789
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL 501 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~ 501 (556)
|+|+|.+-.++++. +|..++.||++ ..++... .|.+.|.++.|| |.| .-+++|+.|.+|+||....+
T Consensus 235 IswnPeafnF~~a~-----ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfs--ptG---~EfvsgsyDksIRIf~~~~~ 304 (433)
T KOG0268|consen 235 ICWNPEAFNFVAAN-----EDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFS--PTG---QEFVSGSYDKSIRIFPVNHG 304 (433)
T ss_pred eecCccccceeecc-----ccccceehhhhhhcccchhhcccceeEEEeccC--CCc---chhccccccceEEEeecCCC
Confidence 99999766777777 99999999997 4555544 578899999999 899 89999999999999999877
Q ss_pred eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 502 AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
..-..+...--..|.++.||.|.+++++||.|+.|++|...-.+++.
T Consensus 305 ~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~Aseklg 351 (433)
T KOG0268|consen 305 HSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAKASEKLG 351 (433)
T ss_pred cchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecchhhhcC
Confidence 65444433334679999999999999999999999999987655543
|
|
| >KOG0306|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.8e-22 Score=204.12 Aligned_cols=233 Identities=17% Similarity=0.255 Sum_probs=203.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+...+..+++++|+..+.+++.++..+ .+.|..|.|.++++++|...|.+.+||+... ..+.++.+|
T Consensus 386 ~~~~Sga~~SikiWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~---------~l~Eti~AH 453 (888)
T KOG0306|consen 386 ILLASGAGESIKIWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASA---------SLVETIRAH 453 (888)
T ss_pred eeeeecCCCcEEEEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehh---------hhhhhhhcc
Confidence 5555567799999999999888888643 7889999999999999999999999999876 556778899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCC-----Ce--------EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-----IG--------YIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-----~~--------~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
.+.|+.++.+||+..+++||.|.+|++||..- |. ..++++. ...|.|+++|||+++++++-
T Consensus 454 dgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel---~ddvL~v~~Spdgk~LaVsL--- 527 (888)
T KOG0306|consen 454 DGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL---EDDVLCVSVSPDGKLLAVSL--- 527 (888)
T ss_pred ccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec---cccEEEEEEcCCCcEEEEEe---
Confidence 99999999999999999999999999998642 11 1245555 57899999999999999998
Q ss_pred cCCCCeEEEEEeCC-c-EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 442 KTGGSILRLHTINA-Q-LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 442 ~~~d~~I~iwdi~g-~-~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
-|++|++|-++. + .+..+.|.-+|.||..| ||+ ++++||+.|..|++|-+.-|.+-+.+- +|...|.++.
T Consensus 528 --LdnTVkVyflDtlKFflsLYGHkLPV~smDIS--~DS---klivTgSADKnVKiWGLdFGDCHKS~f-AHdDSvm~V~ 599 (888)
T KOG0306|consen 528 --LDNTVKVYFLDTLKFFLSLYGHKLPVLSMDIS--PDS---KLIVTGSADKNVKIWGLDFGDCHKSFF-AHDDSVMSVQ 599 (888)
T ss_pred --ccCeEEEEEecceeeeeeecccccceeEEecc--CCc---CeEEeccCCCceEEeccccchhhhhhh-cccCceeEEE
Confidence 899999999983 3 34455788999999999 899 899999999999999999999999997 8999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCCCcCeeecc
Q psy10778 520 YSCDSQHLYASNTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
|-|+...+.+++.||.|+-||-.+-+.+.++.+.
T Consensus 600 F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 600 FLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred EcccceeEEEecCcceEEeechhhhhhheeeccc
Confidence 9999999999999999999999987777777654
|
|
| >KOG0305|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=8.8e-22 Score=202.41 Aligned_cols=237 Identities=17% Similarity=0.223 Sum_probs=199.0
Q ss_pred cCCcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 290 GAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 290 ~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
|...+.++.| ....|++|+..+++.......+ ...|+++.|+++|.+|++|..+|.|.|||.... +.+.
T Consensus 185 Wss~n~laVa-lg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~---------k~~~ 253 (484)
T KOG0305|consen 185 WSSANVLAVA-LGQSVYLWSASSGSVTELCSFG-EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ---------KKTR 253 (484)
T ss_pred cccCCeEEEE-ecceEEEEecCCCceEEeEecC-CCceEEEEECCCCCEEEEeecCCeEEEEehhhc---------cccc
Confidence 3333355554 3568999999999877776644 889999999999999999999999999999876 5567
Q ss_pred EeeC-CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 370 ILLG-HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 370 ~l~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
.+.+ |...|-+++|. +..+.+|+.||.|..+|++..+.... +.+ | ...|..++|++|+.++|+|+ .|+.
T Consensus 254 ~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~~~~~~-H-~qeVCgLkws~d~~~lASGg-----nDN~ 324 (484)
T KOG0305|consen 254 TLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVVSTLQG-H-RQEVCGLKWSPDGNQLASGG-----NDNV 324 (484)
T ss_pred cccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhhhhhhc-c-cceeeeeEECCCCCeeccCC-----Cccc
Confidence 7777 99999999998 67899999999999999998765544 788 9 89999999999999999999 8999
Q ss_pred EEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 448 LRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGH--SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 448 I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
+.|||.. ...+....|...|.+++|+|... .+||+|+ .|+.|++||..+++.+..+. ..+.|.+|.|++.
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~----~lLAsGGGs~D~~i~fwn~~~g~~i~~vd--tgsQVcsL~Wsk~ 398 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQS----GLLATGGGSADRCIKFWNTNTGARIDSVD--TGSQVCSLIWSKK 398 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCcc----CceEEcCCCcccEEEEEEcCCCcEecccc--cCCceeeEEEcCC
Confidence 9999996 33444457899999999996555 4899865 78999999999999999997 4688999999999
Q ss_pred CCEEEE--EcCCCcEEEEEcCCCCCcCeeec
Q psy10778 524 SQHLYA--SNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 524 g~~l~s--gs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
.+-|++ |..++.|.||+..+.+++..+.+
T Consensus 399 ~kEi~sthG~s~n~i~lw~~ps~~~~~~l~g 429 (484)
T KOG0305|consen 399 YKELLSTHGYSENQITLWKYPSMKLVAELLG 429 (484)
T ss_pred CCEEEEecCCCCCcEEEEeccccceeeeecC
Confidence 877765 45678999999988666655543
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.7e-21 Score=183.51 Aligned_cols=229 Identities=14% Similarity=0.166 Sum_probs=181.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.|..+++||++++|+.....+...+ .|..++.+++|.++ ..+++|+.||.|+.+|+.++ ....+..|
T Consensus 27 ~LLvssWDgslrlYdv~~~~l~~~~--~~~~plL~c~F~d~-~~~~~G~~dg~vr~~Dln~~----------~~~~igth 93 (323)
T KOG1036|consen 27 DLLVSSWDGSLRLYDVPANSLKLKF--KHGAPLLDCAFADE-STIVTGGLDGQVRRYDLNTG----------NEDQIGTH 93 (323)
T ss_pred cEEEEeccCcEEEEeccchhhhhhe--ecCCceeeeeccCC-ceEEEeccCceEEEEEecCC----------cceeeccC
Confidence 5666679999999999887655555 58899999999874 78999999999999999986 23567789
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
..+|.||..++....+++||.|++|++||.+....+-.+.. ...|.++..+ +..|++|+ .+..+.+||++
T Consensus 94 ~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~---~kkVy~~~v~--g~~LvVg~-----~~r~v~iyDLR 163 (323)
T KOG1036|consen 94 DEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQ---GKKVYCMDVS--GNRLVVGT-----SDRKVLIYDLR 163 (323)
T ss_pred CCceEEEEeeccCCeEEEcccCccEEEEecccccccccccc---CceEEEEecc--CCEEEEee-----cCceEEEEEcc
Confidence 99999999999888999999999999999997555666665 5678887765 67888888 89999999997
Q ss_pred --CcEEEE--eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC----eEEEEecCCC---------CCCeEE
Q psy10778 455 --AQLITS--LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL----AHLLTLNTNV---------ALPVIA 517 (556)
Q Consensus 455 --g~~i~~--~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~----~~~~~~~~~h---------~~~V~~ 517 (556)
....+. -...-.++|+++- |++ .-.++++-||.|.+=.+... +.-..+. .| --+|.+
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~--pn~---eGy~~sSieGRVavE~~d~s~~~~skkyaFk-CHr~~~~~~~~~yPVNa 237 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALV--PNG---EGYVVSSIEGRVAVEYFDDSEEAQSKKYAFK-CHRLSEKDTEIIYPVNA 237 (323)
T ss_pred cccchhhhccccceeEEEEEEEe--cCC---CceEEEeecceEEEEccCCchHHhhhceeEE-eeecccCCceEEEEece
Confidence 333322 2345688999999 655 45889999999988655433 2222333 23 247999
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 518 VTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
|+|+|-...++||+.||.|.+||+.+++++.-|..
T Consensus 238 i~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~ 272 (323)
T KOG1036|consen 238 IAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAK 272 (323)
T ss_pred eEeccccceEEecCCCceEEEccCcchhhhhhccC
Confidence 99999999999999999999999999877655543
|
|
| >KOG0289|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=190.93 Aligned_cols=206 Identities=17% Similarity=0.315 Sum_probs=186.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
..+++++...+....+.||+.|.++.++|...+ +.+.++.||...|+.+.++++...+++++.|-.|+||.
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~---------q~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws 289 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSN---------QILATLKGHTKKITSVKFHKDLDTVITASADEIIRVWS 289 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchh---------hhhhhccCcceEEEEEEeccchhheeecCCcceEEeec
Confidence 457888888888789999999999999999887 66789999999999999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC---CCeEEEEEeeCCCCC
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE---LRITSVTFSNAPEGV 479 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~---~~i~~i~~s~~pdg~ 479 (556)
............ | ..+|+.+..+|.|.++++++ .+++..+.|++ |..+....++ -.+++++|+ |||
T Consensus 290 ~~~~s~~~~~~~-h-~~~V~~ls~h~tgeYllsAs-----~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fH--pDg- 359 (506)
T KOG0289|consen 290 VPLSSEPTSSRP-H-EEPVTGLSLHPTGEYLLSAS-----NDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFH--PDG- 359 (506)
T ss_pred cccccCcccccc-c-cccceeeeeccCCcEEEEec-----CCceEEEEEccCCcEEEEEeeccccceeEEeeEc--CCc-
Confidence 887776667777 8 99999999999999999999 89999999997 7777666543 458999999 999
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.++.+|..||.|++||+.++..+..|. +|.++|..++|+.+|-+|+++++|+.|++||+++.+..+++.
T Consensus 360 --Lifgtgt~d~~vkiwdlks~~~~a~Fp-ght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 360 --LIFGTGTPDGVVKIWDLKSQTNVAKFP-GHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred --eEEeccCCCceEEEEEcCCccccccCC-CCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 899999999999999999999999998 899999999999999999999999999999999977666654
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.1e-21 Score=199.61 Aligned_cols=217 Identities=13% Similarity=0.181 Sum_probs=187.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.++.|+.|+.+.+|...+.....++. +|...|+|++...++. +++||.|.++++|... ++...+.+|
T Consensus 73 ~l~~g~~D~~i~v~~~~~~~P~~~Lk-gH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~-----------~l~~~l~gH 139 (745)
T KOG0301|consen 73 RLVVGGMDTTIIVFKLSQAEPLYTLK-GHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG-----------ELVYSLQGH 139 (745)
T ss_pred ceEeecccceEEEEecCCCCchhhhh-ccccceeeeecCCcCc-eEecccccceEEecch-----------hhhcccCCc
Confidence 68889999999999999888777776 9999999999888876 9999999999999976 345669999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|++++.-|++ .++|||.|.+|++|.- ++.++++.+ | ...|+.+++-+++ .+++++ .||.|++|++.
T Consensus 140 ~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~g-H-tD~VRgL~vl~~~-~flScs-----NDg~Ir~w~~~ 208 (745)
T KOG0301|consen 140 TASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSG-H-TDCVRGLAVLDDS-HFLSCS-----NDGSIRLWDLD 208 (745)
T ss_pred chheeeeeecCCC-cEEeccCcceeeeccC--Cchhhhhcc-c-hhheeeeEEecCC-CeEeec-----CCceEEEEecc
Confidence 9999999999988 8999999999999975 688999999 9 9999999999874 566777 89999999999
Q ss_pred CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
|+.+.+. .|...+.++... .++ ..++++++|+++++|+.. .+.+.+. .....|+++.+-++|. +++|++|
T Consensus 209 ge~l~~~~ghtn~vYsis~~--~~~---~~Ivs~gEDrtlriW~~~--e~~q~I~-lPttsiWsa~~L~NgD-Ivvg~SD 279 (745)
T KOG0301|consen 209 GEVLLEMHGHTNFVYSISMA--LSD---GLIVSTGEDRTLRIWKKD--ECVQVIT-LPTTSIWSAKVLLNGD-IVVGGSD 279 (745)
T ss_pred CceeeeeeccceEEEEEEec--CCC---CeEEEecCCceEEEeecC--ceEEEEe-cCccceEEEEEeeCCC-EEEeccC
Confidence 8877766 678899999966 455 699999999999999965 7777776 2345899999998886 5678889
Q ss_pred CcEEEEEcCCC
Q psy10778 534 GLVIIWESSSH 544 (556)
Q Consensus 534 g~V~vwdl~~~ 544 (556)
|.|+||.....
T Consensus 280 G~VrVfT~~k~ 290 (745)
T KOG0301|consen 280 GRVRVFTVDKD 290 (745)
T ss_pred ceEEEEEeccc
Confidence 99999998753
|
|
| >KOG0288|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-22 Score=193.32 Aligned_cols=220 Identities=17% Similarity=0.282 Sum_probs=186.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+...+.|+.+++|++.+.+...++. +|.+.|+++.|......+++|+.|.+|++||+... .+.++.. .
T Consensus 233 ~~iAas~d~~~r~Wnvd~~r~~~TLs-GHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~---------~C~kt~l-~ 301 (459)
T KOG0288|consen 233 HVIAASNDKNLRLWNVDSLRLRHTLS-GHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKA---------YCSKTVL-P 301 (459)
T ss_pred eEEeecCCCceeeeeccchhhhhhhc-ccccceeeehhhccccceeeccccchhhhhhhhhh---------heecccc-c
Confidence 56667899999999999998888887 79999999999987777999999999999999864 2323222 2
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.+.+|..+ ...++||-.|++|+.||.++....+.++. .+.|+++..++++..+.+++ .|.++.++|++
T Consensus 302 ~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~---gg~vtSl~ls~~g~~lLsss-----RDdtl~viDlR 371 (459)
T KOG0288|consen 302 GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPL---GGRVTSLDLSMDGLELLSSS-----RDDTLKVIDLR 371 (459)
T ss_pred cccccceEec--ceeeeecccccceEEEeccCCceeeEeec---CcceeeEeeccCCeEEeeec-----CCCceeeeecc
Confidence 3345555554 55789999999999999999999999998 57999999999999999998 99999999999
Q ss_pred CcEEE-Eee-----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC-CeEEEEEecCCCEE
Q psy10778 455 AQLIT-SLA-----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL-PVIAVTYSCDSQHL 527 (556)
Q Consensus 455 g~~i~-~~~-----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~-~V~~l~~s~dg~~l 527 (556)
+..+. .+. .....+.++|| |++ .|+++|+.||.|+||++.++++...+...+.. .|++++|+|.|..|
T Consensus 372 t~eI~~~~sA~g~k~asDwtrvvfS--pd~---~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~L 446 (459)
T KOG0288|consen 372 TKEIRQTFSAEGFKCASDWTRVVFS--PDG---SYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGL 446 (459)
T ss_pred cccEEEEeeccccccccccceeEEC--CCC---ceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchh
Confidence 65443 332 34568999999 999 89999999999999999999999998854433 69999999999999
Q ss_pred EEEcCCCcEEEEE
Q psy10778 528 YASNTEGLVIIWE 540 (556)
Q Consensus 528 ~sgs~Dg~V~vwd 540 (556)
++++.++.+.+|.
T Consensus 447 lsadk~~~v~lW~ 459 (459)
T KOG0288|consen 447 LSADKQKAVTLWT 459 (459)
T ss_pred hcccCCcceEecC
Confidence 9999999999993
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-20 Score=201.24 Aligned_cols=180 Identities=16% Similarity=0.148 Sum_probs=151.7
Q ss_pred EeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCe--------EEEE
Q psy10778 342 GLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIG--------YIRE 412 (556)
Q Consensus 342 gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~--------~v~~ 412 (556)
|+.++.|++|+.... .++..+.+|.+.|.+++|+|+ +.+|+||+.||+|++||+.++. .+..
T Consensus 50 GG~~gvI~L~~~~r~---------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~ 120 (568)
T PTZ00420 50 GGLIGAIRLENQMRK---------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCI 120 (568)
T ss_pred CCceeEEEeeecCCC---------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEE
Confidence 667889999987643 456788999999999999996 7899999999999999998642 3446
Q ss_pred eCCCCCCCCeeEEEEeCCCCeE-EEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC
Q psy10778 413 IPCVDPNTPVSHVTMSETNGEI-ASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD 490 (556)
Q Consensus 413 l~~~h~~~~V~~l~~sp~~~~i-~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d 490 (556)
+.+ | ...|.+++|+|++..+ ++++ .|++|++||++ ++.+..+.+...|.+++|+ ++| .+|++++.|
T Consensus 121 L~g-H-~~~V~sVaf~P~g~~iLaSgS-----~DgtIrIWDl~tg~~~~~i~~~~~V~Slsws--pdG---~lLat~s~D 188 (568)
T PTZ00420 121 LKG-H-KKKISIIDWNPMNYYIMCSSG-----FDSFVNIWDIENEKRAFQINMPKKLSSLKWN--IKG---NLLSGTCVG 188 (568)
T ss_pred eec-C-CCcEEEEEECCCCCeEEEEEe-----CCCeEEEEECCCCcEEEEEecCCcEEEEEEC--CCC---CEEEEEecC
Confidence 777 8 8999999999998765 5777 89999999997 6666677777889999999 899 899999999
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEE-----EEecCCCEEEEEcCCC----cEEEEEcCC
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAV-----TYSCDSQHLYASNTEG----LVIIWESSS 543 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l-----~~s~dg~~l~sgs~Dg----~V~vwdl~~ 543 (556)
+.|++||+++++.+.++. +|.+.+.+. .|++++.+|++++.|+ .|++||+++
T Consensus 189 ~~IrIwD~Rsg~~i~tl~-gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~ 249 (568)
T PTZ00420 189 KHMHIIDPRKQEIASSFH-IHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN 249 (568)
T ss_pred CEEEEEECCCCcEEEEEe-cccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC
Confidence 999999999999999887 787665432 3458888999887764 799999986
|
|
| >KOG0646|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.7e-21 Score=191.03 Aligned_cols=215 Identities=20% Similarity=0.234 Sum_probs=182.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.|...|.|++|.+.+|.++..+. +|-..|+|+.|+.||.+|+|||.||.|.+|.+..--........++...+.+|
T Consensus 95 ~l~ag~i~g~lYlWelssG~LL~v~~-aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~H 173 (476)
T KOG0646|consen 95 FLLAGTISGNLYLWELSSGILLNVLS-AHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDH 173 (476)
T ss_pred EEEeecccCcEEEEEeccccHHHHHH-hhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccC
Confidence 66666699999999999999998885 89999999999999999999999999999998754322222244788999999
Q ss_pred CccEEEEEEccCC--CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGF--SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~--~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+-+|+++...+.| .+++|+|.|.+|++||+..+..+.++.. ...+.+++++|.+..+.+|+ .+|.|.+.+
T Consensus 174 tlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~f---p~si~av~lDpae~~~yiGt-----~~G~I~~~~ 245 (476)
T KOG0646|consen 174 TLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITF---PSSIKAVALDPAERVVYIGT-----EEGKIFQNL 245 (476)
T ss_pred cceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEec---CCcceeEEEcccccEEEecC-----CcceEEeee
Confidence 9999999998764 4899999999999999999999999887 68999999999999999999 899999887
Q ss_pred eC---Cc--------------EEEEe-ecC--CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 453 IN---AQ--------------LITSL-ASE--LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 453 i~---g~--------------~i~~~-~~~--~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
+. |+ .+..+ .|. +.|+|++++ -|| .+|++|+.||+|+|||+.+.++++++. ...
T Consensus 246 ~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais--~Dg---tlLlSGd~dg~VcvWdi~S~Q~iRtl~-~~k 319 (476)
T KOG0646|consen 246 LFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAIS--TDG---TLLLSGDEDGKVCVWDIYSKQCIRTLQ-TSK 319 (476)
T ss_pred hhcCCcccccccccccccccceeeeeccccCCcceeEEEEe--cCc---cEEEeeCCCCCEEEEecchHHHHHHHh-hhc
Confidence 64 11 11122 233 489999999 899 899999999999999999999999987 357
Q ss_pred CCeEEEEEecCC
Q psy10778 513 LPVIAVTYSCDS 524 (556)
Q Consensus 513 ~~V~~l~~s~dg 524 (556)
++|+.+.+.|-.
T Consensus 320 gpVtnL~i~~~~ 331 (476)
T KOG0646|consen 320 GPVTNLQINPLE 331 (476)
T ss_pred cccceeEeeccc
Confidence 899999886543
|
|
| >KOG0293|consensus | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.3e-21 Score=188.35 Aligned_cols=211 Identities=11% Similarity=0.153 Sum_probs=184.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.|.+.|.-+.|+++|++||+|+.|.+..+|++..... .+...++.+|..+|..+.||||.+++++++.|..+.+
T Consensus 222 ~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~------~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~l 295 (519)
T KOG0293|consen 222 DHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH------FKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSL 295 (519)
T ss_pred hCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc------eeeeeeeecccCceEEEEECCCCCeEEecCchHheee
Confidence 7999999999999999999999999999999876521 2557899999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec--CCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS--ELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~--~~~i~~i~~s~~pdg~ 479 (556)
||+.+|.....+...+ ...+.+.+|.|||..+++|+ .|+++..||++|..+...+. ...|.+++.+ +||
T Consensus 296 wDv~tgd~~~~y~~~~-~~S~~sc~W~pDg~~~V~Gs-----~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait--~Dg- 366 (519)
T KOG0293|consen 296 WDVDTGDLRHLYPSGL-GFSVSSCAWCPDGFRFVTGS-----PDRTIIMWDLDGNILGNWEGVRDPKVHDLAIT--YDG- 366 (519)
T ss_pred ccCCcchhhhhcccCc-CCCcceeEEccCCceeEecC-----CCCcEEEecCCcchhhcccccccceeEEEEEc--CCC-
Confidence 9999999888876523 47899999999999999999 89999999999988777653 3579999999 999
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+++++.+.|..|++++..+......+. ...+|++++.|.|++++++.-.+..+++||++....+.++.
T Consensus 367 --k~vl~v~~d~~i~l~~~e~~~dr~lis--e~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~ 434 (519)
T KOG0293|consen 367 --KYVLLVTVDKKIRLYNREARVDRGLIS--EEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYF 434 (519)
T ss_pred --cEEEEEecccceeeechhhhhhhcccc--ccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhh
Confidence 888888899999999987766655554 35899999999999999999999999999999766555543
|
|
| >KOG1407|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=6.1e-21 Score=175.75 Aligned_cols=206 Identities=14% Similarity=0.187 Sum_probs=178.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~ 400 (556)
+|...|.+++|+.+|..|++|+.|+++.+|+++.... ..-....+|.+.|-.++|+|.. ..+++++.|.+|+
T Consensus 18 ~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~-------~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir 90 (313)
T KOG1407|consen 18 GHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRF-------RKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIR 90 (313)
T ss_pred hhhhcceEEEEcccCceeeecccCCceEEEEecchhh-------hhhhcccCCCcchhhheeCCCCCcceEEecCCceEE
Confidence 6888999999999999999999999999999986511 1224568999999999999854 5899999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGV 479 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~ 479 (556)
+||++++++...+.. ...=.-++|+|+|++++++. .|..|...|.+ .+.+...+..-.+.-++|+ .++
T Consensus 91 ~wd~r~~k~~~~i~~---~~eni~i~wsp~g~~~~~~~-----kdD~it~id~r~~~~~~~~~~~~e~ne~~w~--~~n- 159 (313)
T KOG1407|consen 91 IWDIRSGKCTARIET---KGENINITWSPDGEYIAVGN-----KDDRITFIDARTYKIVNEEQFKFEVNEISWN--NSN- 159 (313)
T ss_pred EEEeccCcEEEEeec---cCcceEEEEcCCCCEEEEec-----CcccEEEEEecccceeehhcccceeeeeeec--CCC-
Confidence 999999999999887 56667789999999999999 89999999998 5666666667788889998 555
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+++......|.|.|......+++..+. +|.....||.|+|+|+++++|+.|..+.+||+..--+..
T Consensus 160 --d~Fflt~GlG~v~ILsypsLkpv~si~-AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R 225 (313)
T KOG1407|consen 160 --DLFFLTNGLGCVEILSYPSLKPVQSIK-AHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER 225 (313)
T ss_pred --CEEEEecCCceEEEEeccccccccccc-cCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence 577777778999999999999999998 899999999999999999999999999999998844433
|
|
| >KOG0301|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-21 Score=196.67 Aligned_cols=220 Identities=17% Similarity=0.217 Sum_probs=190.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceE-cCCCCCceEE-EEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVI-RPPLGATIAT-ATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~-~~~h~~~V~~-i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.+..|+.||++++|+...++..... ..+|.+.|.+ +++.+ ++-.+++|+.|++|.+|..... .+..++
T Consensus 27 ~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~---------~P~~~L 97 (745)
T KOG0301|consen 27 CIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQA---------EPLYTL 97 (745)
T ss_pred EEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCC---------Cchhhh
Confidence 6788999999999999877666532 2257777776 77775 4556999999999999998876 788999
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.+|.+.|+|++...++. ++|||.|.++++|-.. ++...+.+ | ...|.+++.-|++ .+++|+ .|.+|++|
T Consensus 98 kgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~--~l~~~l~g-H-~asVWAv~~l~e~-~~vTgs-----aDKtIklW 166 (745)
T KOG0301|consen 98 KGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIG--ELVYSLQG-H-TASVWAVASLPEN-TYVTGS-----ADKTIKLW 166 (745)
T ss_pred hccccceeeeecCCcCc-eEecccccceEEecch--hhhcccCC-c-chheeeeeecCCC-cEEecc-----Ccceeeec
Confidence 99999999999888877 9999999999999654 56666899 9 9999999999987 888999 89999999
Q ss_pred EeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 452 TINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 452 di~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
.- ++.+.++ .|.+-|+.+++- +++ .+++++.||.|++|++ +++.+.++. +|.+-|.++....++..++++
T Consensus 167 k~-~~~l~tf~gHtD~VRgL~vl--~~~----~flScsNDg~Ir~w~~-~ge~l~~~~-ghtn~vYsis~~~~~~~Ivs~ 237 (745)
T KOG0301|consen 167 KG-GTLLKTFSGHTDCVRGLAVL--DDS----HFLSCSNDGSIRLWDL-DGEVLLEMH-GHTNFVYSISMALSDGLIVST 237 (745)
T ss_pred cC-CchhhhhccchhheeeeEEe--cCC----CeEeecCCceEEEEec-cCceeeeee-ccceEEEEEEecCCCCeEEEe
Confidence 87 6667776 478999999998 664 6899999999999998 888888888 899999999988899999999
Q ss_pred cCCCcEEEEEcCC
Q psy10778 531 NTEGLVIIWESSS 543 (556)
Q Consensus 531 s~Dg~V~vwdl~~ 543 (556)
++|+++++|+...
T Consensus 238 gEDrtlriW~~~e 250 (745)
T KOG0301|consen 238 GEDRTLRIWKKDE 250 (745)
T ss_pred cCCceEEEeecCc
Confidence 9999999999873
|
|
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.8e-21 Score=200.83 Aligned_cols=239 Identities=13% Similarity=0.182 Sum_probs=194.6
Q ss_pred ccccccccCC--cceEEeccCCCeEEEEeCCC---CCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeec
Q psy10778 283 ISSLNVIGAG--AGMICWNECDNLIRLKMSKE---LPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELN 356 (556)
Q Consensus 283 ~~~~~~~~~~--~~~l~~gs~Dg~I~lw~~~~---~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~ 356 (556)
.++-++.|.. ..+||+++..|.|.+||+.. .+.+..+. .|...|+++.|++. ..+|++||.||+|++||++..
T Consensus 88 ~S~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~-EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~ 166 (839)
T KOG0269|consen 88 YSAADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFN-EHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSK 166 (839)
T ss_pred eehhhcccccchhhhheeecCCCcEEEEecCccccchhhhHhh-hhccceeeeeeccCCccEEEecCCCceEEEEeeecc
Confidence 4455555542 23899999999999999976 34444444 89999999999974 578999999999999999987
Q ss_pred cCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeE
Q psy10778 357 ASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEI 434 (556)
Q Consensus 357 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i 434 (556)
+...++.+....|.++.|+| .+..++++.+.|.+.+||++.. ++...+.. | .++|.++.|+|++.+|
T Consensus 167 ---------~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~A-H-~GpV~c~nwhPnr~~l 235 (839)
T KOG0269|consen 167 ---------KSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTA-H-NGPVLCLNWHPNREWL 235 (839)
T ss_pred ---------cccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhc-c-cCceEEEeecCCCcee
Confidence 45567788899999999999 4568999999999999999975 45677888 9 9999999999999999
Q ss_pred EEEeecCcCCCCeEEEEEeC---CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe--CCCeEEEEeCCCCe-EEEEec
Q psy10778 435 ASVLQTTKTGGSILRLHTIN---AQLITSLASELRITSVTFSNAPEGVSQNVIVTGH--SDGTIQLWSGYKLA-HLLTLN 508 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~---g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~--~dg~I~iwd~~~~~-~~~~~~ 508 (556)
|+|+ +|+.|+|||.. ...+.++....++.++.|- |+.. ..|++++ .|-.|+|||++..- +..++.
T Consensus 236 ATGG-----RDK~vkiWd~t~~~~~~~~tInTiapv~rVkWR--P~~~--~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~ 306 (839)
T KOG0269|consen 236 ATGG-----RDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWR--PARS--YHLATCSMVVDTSVHVWDVRRPYIPYATFL 306 (839)
T ss_pred eecC-----CCccEEEEeccCCCccceeEEeecceeeeeeec--cCcc--chhhhhhccccceEEEEeeccccccceeee
Confidence 9999 99999999996 3456667778899999999 6553 5777766 57789999997554 455665
Q ss_pred CCCCCCeEEEEEec-CCCEEEEEcCCCcEEEEEcCC
Q psy10778 509 TNVALPVIAVTYSC-DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 509 ~~h~~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|...++.++|.. |...+.+++.||.|..-.+++
T Consensus 307 -eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~kn 341 (839)
T KOG0269|consen 307 -EHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKN 341 (839)
T ss_pred -ccCccccceeccCCCceeeEeecCccHHHHhhhhc
Confidence 7999999999976 456788999999886554444
|
|
| >KOG0296|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.9e-20 Score=178.59 Aligned_cols=206 Identities=16% Similarity=0.194 Sum_probs=184.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.|.++|-+++.+|+.++++||+.|..-.+|++.++ .....+.+|++.|+++.|+.+|.+||||+-+|.|+|
T Consensus 62 ~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~g---------e~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v 132 (399)
T KOG0296|consen 62 KHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTG---------EFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLV 132 (399)
T ss_pred hcCCceEEEEeCCCCceEEecCCCceEEEEEccCC---------cceeEecCCCCceEEEEEccCceEEEecCCCccEEE
Confidence 79999999999999999999999999999999987 567889999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-cEEEEe-ecCCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-QLITSL-ASELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~~i~~~-~~~~~i~~i~~s~~pdg~ 479 (556)
|+..++.....+.. . -..+.-+.|+|.+..+++|+ .||.+-+|.+.. ...+.+ .|..++++-.|. |+|
T Consensus 133 ~~~stg~~~~~~~~-e-~~dieWl~WHp~a~illAG~-----~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~--pdG- 202 (399)
T KOG0296|consen 133 FKVSTGGEQWKLDQ-E-VEDIEWLKWHPRAHILLAGS-----TDGSVWMWQIPSQALCKVMSGHNSPCTCGEFI--PDG- 202 (399)
T ss_pred EEcccCceEEEeec-c-cCceEEEEecccccEEEeec-----CCCcEEEEECCCcceeeEecCCCCCccccccc--CCC-
Confidence 99999998888864 3 57899999999999999999 999999999974 555555 478899999999 899
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+.+++|..||+|++|+..+++++..+........+++.++..+..+++|+.++.+++-+..+++.+.
T Consensus 203 --Kr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~ 269 (399)
T KOG0296|consen 203 --KRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVN 269 (399)
T ss_pred --ceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEE
Confidence 8999999999999999999999999975445677889999999999999999999888877765443
|
|
| >KOG1446|consensus | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.1e-19 Score=169.10 Aligned_cols=221 Identities=14% Similarity=0.178 Sum_probs=179.7
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
-.|.+||.-++.+.+.+..+. +|...|+.++.+|-+..+++++.|++|++||++.. ++...+..... .
T Consensus 77 k~d~tIryLsl~dNkylRYF~-GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~---------~cqg~l~~~~~--p 144 (311)
T KOG1446|consen 77 KEDDTIRYLSLHDNKYLRYFP-GHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVK---------KCQGLLNLSGR--P 144 (311)
T ss_pred CCCCceEEEEeecCceEEEcC-CCCceEEEEEecCCCCeEEecccCCeEEeeEecCC---------CCceEEecCCC--c
Confidence 359999999999999888886 99999999999999999999999999999999965 34444433333 3
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEeCCCC--eEEEEeCC--CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe-C
Q psy10778 380 DLYLCAGFSVAVSSSEDGTCLLWDINTI--GYIREIPC--VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI-N 454 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~Dg~I~iwdl~~~--~~v~~l~~--~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi-~ 454 (556)
.+++.|+|-++|++.....|++||++.- .+..++.. +. ....+.|.|||+|+.|+.+. ..+.+++.|. +
T Consensus 145 i~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~-~~ew~~l~FS~dGK~iLlsT-----~~s~~~~lDAf~ 218 (311)
T KOG1446|consen 145 IAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDND-EAEWTDLEFSPDGKSILLST-----NASFIYLLDAFD 218 (311)
T ss_pred ceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCC-ccceeeeEEcCCCCEEEEEe-----CCCcEEEEEccC
Confidence 5789999999999998889999999864 23333322 02 57899999999999999998 8899999997 5
Q ss_pred CcEEEEeecC---C-CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 455 AQLITSLASE---L-RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 455 g~~i~~~~~~---~-~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
|..+.++... . --...+|+ ||+ +++++|+.||+|.+|++.+++.+..+...+..++.++.|+|....++++
T Consensus 219 G~~~~tfs~~~~~~~~~~~a~ft--Pds---~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa 293 (311)
T KOG1446|consen 219 GTVKSTFSGYPNAGNLPLSATFT--PDS---KFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA 293 (311)
T ss_pred CcEeeeEeeccCCCCcceeEEEC--CCC---cEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec
Confidence 8888877532 1 22577888 999 8999999999999999999999999984478999999999977666655
Q ss_pred cCCCcEEEEEcCCCC
Q psy10778 531 NTEGLVIIWESSSHN 545 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~ 545 (556)
+..+.+|-....+
T Consensus 294 --~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 294 --SSNLVFWLPDEDA 306 (311)
T ss_pred --CceEEEEeccccc
Confidence 5578888765443
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=4.5e-22 Score=205.17 Aligned_cols=217 Identities=18% Similarity=0.206 Sum_probs=195.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++|++|-.+-||....-..+-.+. +|..+|.|+.|+++..+|++|+.+|+|++||+... +.+++|.||
T Consensus 42 ~~~~Gg~~~k~~L~~i~kp~~i~S~~-~hespIeSl~f~~~E~LlaagsasgtiK~wDleeA---------k~vrtLtgh 111 (825)
T KOG0267|consen 42 SLVTGGEDEKVNLWAIGKPNAITSLT-GHESPIESLTFDTSERLLAAGSASGTIKVWDLEEA---------KIVRTLTGH 111 (825)
T ss_pred eeccCCCceeeccccccCCchhheee-ccCCcceeeecCcchhhhcccccCCceeeeehhhh---------hhhhhhhcc
Confidence 78899999999999886543333333 89999999999999999999999999999999976 667899999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...+..+.|+|-+.+.++|+.|+.+++||++...+...+.+ | ...+..+.++|+|++++.++ +|..+++||..
T Consensus 112 ~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s-~-~~vv~~l~lsP~Gr~v~~g~-----ed~tvki~d~~ 184 (825)
T KOG0267|consen 112 LLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKS-H-TRVVDVLRLSPDGRWVASGG-----EDNTVKIWDLT 184 (825)
T ss_pred ccCcceeeeccceEEeccccccccceehhhhccCceeeecC-C-cceeEEEeecCCCceeeccC-----Ccceeeeeccc
Confidence 99999999999999999999999999999998889999999 9 89999999999999999998 89999999997
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
|+++..++ |+..+.++.|+ |.. -++++|+.|++|++||+.+-+.+.... .....|.+.+|+++++.+++|..
T Consensus 185 agk~~~ef~~~e~~v~sle~h--p~e---~Lla~Gs~d~tv~f~dletfe~I~s~~-~~~~~v~~~~fn~~~~~~~~G~q 258 (825)
T KOG0267|consen 185 AGKLSKEFKSHEGKVQSLEFH--PLE---VLLAPGSSDRTVRFWDLETFEVISSGK-PETDGVRSLAFNPDGKIVLSGEQ 258 (825)
T ss_pred ccccccccccccccccccccC--chh---hhhccCCCCceeeeeccceeEEeeccC-CccCCceeeeecCCceeeecCch
Confidence 99999996 88999999999 665 688999999999999999888888877 45788999999999999988876
Q ss_pred CC
Q psy10778 533 EG 534 (556)
Q Consensus 533 Dg 534 (556)
+.
T Consensus 259 ~s 260 (825)
T KOG0267|consen 259 IS 260 (825)
T ss_pred hh
Confidence 53
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.3e-20 Score=172.16 Aligned_cols=233 Identities=15% Similarity=0.174 Sum_probs=181.7
Q ss_pred eEEeccCCCeEEEEeCCCCCC---cceEcCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPA---TPVIRPPLGATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~---~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.|++++.|++|+|+..+.... +..+. +|.++|..++|.. -|.+||+++.||.|.||+-..+. .....
T Consensus 25 rlATcsSD~tVkIf~v~~n~~s~ll~~L~-Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~-------w~k~~ 96 (299)
T KOG1332|consen 25 RLATCSSDGTVKIFEVRNNGQSKLLAELT-GHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR-------WTKAY 96 (299)
T ss_pred eeeeecCCccEEEEEEcCCCCceeeeEec-CCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc-------hhhhh
Confidence 689999999999999875532 33343 8999999999986 69999999999999999987651 13345
Q ss_pred EeeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCC-e--EEEEeCCCCCCCCeeEEEEeCC---C----------
Q psy10778 370 ILLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTI-G--YIREIPCVDPNTPVSHVTMSET---N---------- 431 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~-~--~v~~l~~~h~~~~V~~l~~sp~---~---------- 431 (556)
....|.+.|++++|.|. |-.|+.++.||.|.|.+.+.. . ..+.... | .-.|++++|.|. |
T Consensus 97 e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~a-H-~~GvnsVswapa~~~g~~~~~~~~~~ 174 (299)
T KOG1332|consen 97 EHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFA-H-EIGVNSVSWAPASAPGSLVDQGPAAK 174 (299)
T ss_pred hhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhc-c-ccccceeeecCcCCCccccccCcccc
Confidence 67789999999999985 458999999999999988754 1 2234455 8 888999999986 3
Q ss_pred -CeEEEEeecCcCCCCeEEEEEeC-Cc--EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEE
Q psy10778 432 -GEIASVLQTTKTGGSILRLHTIN-AQ--LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHL 504 (556)
Q Consensus 432 -~~i~s~s~~~~~~d~~I~iwdi~-g~--~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~ 504 (556)
+.+++++ .|+.|+||+.+ ++ +-.++ .|.+.|+.++|.|. .|.....|++++.||+|.||..... ...
T Consensus 175 ~krlvSgG-----cDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~-~gl~~s~iAS~SqDg~viIwt~~~e~e~wk 248 (299)
T KOG1332|consen 175 VKRLVSGG-----CDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPS-VGLPKSTIASCSQDGTVIIWTKDEEYEPWK 248 (299)
T ss_pred cceeeccC-----CccceeeeecCCcchhhhhhhhhcchhhhhhhhccc-cCCCceeeEEecCCCcEEEEEecCccCccc
Confidence 5689988 89999999997 32 22323 57899999999952 3334478999999999999976421 111
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 505 LTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 505 ~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.++.......+..+.||..|..|++++.|..|.+|.-..
T Consensus 249 ~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwke~~ 287 (299)
T KOG1332|consen 249 KTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWKENV 287 (299)
T ss_pred ccccccCCcceEEEEEeccccEEEEecCCcEEEEEEeCC
Confidence 122112347899999999999999999999999997544
|
|
| >KOG0640|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=8.8e-21 Score=178.30 Aligned_cols=232 Identities=14% Similarity=0.171 Sum_probs=188.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|++|+.|++|+++|.........++ +....+|.++.|.|.|.+|++|..-.++++||+.+-+ ... ....-.+
T Consensus 186 ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~Q---cfv---sanPd~q 259 (430)
T KOG0640|consen 186 ILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQ---CFV---SANPDDQ 259 (430)
T ss_pred eEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEecccee---Eee---ecCcccc
Confidence 89999999999999987543322211 1345689999999999999999999999999998751 000 0012357
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|++.|+++.+++.+++-++||.||.|++||--++++++++...|+.+.|.+..|..++++|++.+ .|..+++|.+
T Consensus 260 ht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG-----~DS~vkLWEi 334 (430)
T KOG0640|consen 260 HTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG-----KDSTVKLWEI 334 (430)
T ss_pred cccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC-----Ccceeeeeee
Confidence 99999999999999999999999999999999999999987657678899999999999999998 9999999999
Q ss_pred C-CcEEEEeecC------CCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 454 N-AQLITSLASE------LRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 454 ~-g~~i~~~~~~------~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
. |+.+..+.+. ..-+...|+. .. .+++. --..+.+.-||.++...+..+..+|.+.++.+.-||.+.
T Consensus 335 ~t~R~l~~YtGAg~tgrq~~rtqAvFNh--tE---dyVl~pDEas~slcsWdaRtadr~~l~slgHn~a~R~i~HSP~~p 409 (430)
T KOG0640|consen 335 STGRMLKEYTGAGTTGRQKHRTQAVFNH--TE---DYVLFPDEASNSLCSWDARTADRVALLSLGHNGAVRWIVHSPVEP 409 (430)
T ss_pred cCCceEEEEecCCcccchhhhhhhhhcC--cc---ceEEccccccCceeeccccchhhhhhcccCCCCCceEEEeCCCCC
Confidence 7 8888887542 1223445552 22 34444 345678999999999888888889999999999999999
Q ss_pred EEEEEcCCCcEEEEEcC
Q psy10778 526 HLYASNTEGLVIIWESS 542 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl~ 542 (556)
.+++|+.|-+++.|--+
T Consensus 410 ~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 410 AFMTCSDDFRARFWYRR 426 (430)
T ss_pred ceeeecccceeeeeeec
Confidence 99999999999999653
|
|
| >KOG0264|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.2e-20 Score=184.34 Aligned_cols=212 Identities=23% Similarity=0.281 Sum_probs=172.9
Q ss_pred cCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCccccc-ccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCC
Q psy10778 320 RPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIE-FCKPPTILLGHSACVTDLYLCAGFS-VAVSSSED 396 (556)
Q Consensus 320 ~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~-~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~D 396 (556)
...|.+.|+.+.+.|+. ..+|+++..+.|.|||+.......+.. .+.+-..|.||.+.-.+++|++... .+++|+.|
T Consensus 120 ~i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d 199 (422)
T KOG0264|consen 120 KINHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDD 199 (422)
T ss_pred eccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCC
Confidence 34699999999999864 566777889999999998765544432 4567779999999999999998554 89999999
Q ss_pred CcEEEEeCCCCeE-------EEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeCC--c-EEE-EeecC
Q psy10778 397 GTCLLWDINTIGY-------IREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTINA--Q-LIT-SLASE 464 (556)
Q Consensus 397 g~I~iwdl~~~~~-------v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~g--~-~i~-~~~~~ 464 (556)
++|++||+..... ...+.+ | ...|..++|++.. ..+++++ .|+.+.|||++. . +.. ...|.
T Consensus 200 ~~i~lwdi~~~~~~~~~~~p~~~~~~-h-~~~VeDV~~h~~h~~lF~sv~-----dd~~L~iwD~R~~~~~~~~~~~ah~ 272 (422)
T KOG0264|consen 200 HTICLWDINAESKEDKVVDPKTIFSG-H-EDVVEDVAWHPLHEDLFGSVG-----DDGKLMIWDTRSNTSKPSHSVKAHS 272 (422)
T ss_pred CcEEEEeccccccCCccccceEEeec-C-Ccceehhhccccchhhheeec-----CCCeEEEEEcCCCCCCCcccccccC
Confidence 9999999986432 345677 8 8999999999865 4566666 899999999983 2 222 22578
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcC
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESS 542 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~ 542 (556)
..++|++|+|.. + .+||||+.|++|++||+++.+ ++.++. +|...|.++.|||+. ..|++++.||++.|||+.
T Consensus 273 ~~vn~~~fnp~~-~---~ilAT~S~D~tV~LwDlRnL~~~lh~~e-~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls 347 (422)
T KOG0264|consen 273 AEVNCVAFNPFN-E---FILATGSADKTVALWDLRNLNKPLHTFE-GHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLS 347 (422)
T ss_pred CceeEEEeCCCC-C---ceEEeccCCCcEEEeechhcccCceecc-CCCcceEEEEeCCCCCceeEecccCCcEEEEecc
Confidence 999999999533 3 799999999999999999865 677787 899999999999965 788899999999999998
Q ss_pred C
Q psy10778 543 S 543 (556)
Q Consensus 543 ~ 543 (556)
.
T Consensus 348 ~ 348 (422)
T KOG0264|consen 348 R 348 (422)
T ss_pred c
Confidence 7
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.2e-19 Score=159.13 Aligned_cols=204 Identities=13% Similarity=0.139 Sum_probs=170.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC----CCEEEEEc-CC
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG----FSVAVSSS-ED 396 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~~~l~sgs-~D 396 (556)
.|.+.|.|.+|+|+|++|++|+.|.+|++....... ... ..+-..+.-|.+.|..++|-.+ +.+|++++ .|
T Consensus 87 hhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt--~~~--~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 87 HHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADT--CNA--TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred ccCccEEEEEecCccCeEEecCCCceEEEEeccccc--ccc--cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 588999999999999999999999999997665331 111 1233567789999999999643 34677755 47
Q ss_pred CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee---c-----CCCe
Q psy10778 397 GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA---S-----ELRI 467 (556)
Q Consensus 397 g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~---~-----~~~i 467 (556)
..|++-|..+|+....+.+ | .+.|.++ ++-++-.+++++ .|.+|++||++ ...+.++. + .+.|
T Consensus 163 c~iy~tdc~~g~~~~a~sg-h-tghilal-yswn~~m~~sgs-----qdktirfwdlrv~~~v~~l~~~~~~~glessav 234 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSG-H-TGHILAL-YSWNGAMFASGS-----QDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAV 234 (350)
T ss_pred ceEEEeecCCCCcceeecC-C-cccEEEE-EEecCcEEEccC-----CCceEEEEeeeccceeeeccCcccCCCccccee
Confidence 7888889999999999999 9 8888765 344578899998 89999999998 55666553 1 3678
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+++.. |.| ++|++|..|....+||++.++.++.+. .|...|+++.|||...++++++-|..|++-|+..
T Consensus 235 aav~vd--psg---rll~sg~~dssc~lydirg~r~iq~f~-phsadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 235 AAVAVD--PSG---RLLASGHADSSCMLYDIRGGRMIQRFH-PHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred EEEEEC--CCc---ceeeeccCCCceEEEEeeCCceeeeeC-CCccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 999999 999 999999999999999999999999998 7999999999999999999999999999999976
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.1e-20 Score=188.31 Aligned_cols=245 Identities=15% Similarity=0.175 Sum_probs=183.0
Q ss_pred eEEeccCCCeEEEEeCCCC----CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc---ccCC
Q psy10778 295 MICWNECDNLIRLKMSKEL----PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE---FCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~----~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~---~~~~ 367 (556)
-+++|+-|.+|++||...- +....+.......|++++|++.|..|++.+.....+|+|-+......... ...-
T Consensus 181 R~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~D 260 (641)
T KOG0772|consen 181 RFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRD 260 (641)
T ss_pred eeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEccCCceeeeeeccchhhhh
Confidence 5889999999999998743 22222333455689999999999999999988999999976431000000 0022
Q ss_pred CeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeE-EEEeCC----CCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 368 PTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGY-IREIPC----VDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~-v~~l~~----~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
+...+||...++|.+|+|..+ .++|++.||+++|||+...+. ...++. .. .-+++.++|++++..||+|+
T Consensus 261 m~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~-Rv~~tsC~~nrdg~~iAagc--- 336 (641)
T KOG0772|consen 261 MYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGK-RVPVTSCAWNRDGKLIAAGC--- 336 (641)
T ss_pred hhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCc-ccCceeeecCCCcchhhhcc---
Confidence 345679999999999999765 799999999999999986532 222221 01 35789999999999999999
Q ss_pred cCCCCeEEEEEeCCc---EEEEe--ecC--CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecC-CCC
Q psy10778 442 KTGGSILRLHTINAQ---LITSL--ASE--LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNT-NVA 512 (556)
Q Consensus 442 ~~~d~~I~iwdi~g~---~i~~~--~~~--~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~-~h~ 512 (556)
.||.|.+|+..+. ....+ .|. ..|+|+.|| ++| ++|++-+.|+++++||+++.+ ++..... ...
T Consensus 337 --~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS--~dg---~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~ 409 (641)
T KOG0772|consen 337 --LDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFS--YDG---NYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTP 409 (641)
T ss_pred --cCCceeeeecCCcccccceEeeeccCCCCceeEEEec--ccc---chhhhccCCCceeeeeccccccchhhhcCCCcc
Confidence 8999999998532 22222 354 489999999 999 999999999999999998765 4444332 234
Q ss_pred CCeEEEEEecCCCEEEEEcC------CCcEEEEEcCCCCCcCee
Q psy10778 513 LPVIAVTYSCDSQHLYASNT------EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~------Dg~V~vwdl~~~~~~~~~ 550 (556)
-+-+.++|||+.++|++|++ .|.+.++|..+-..+.++
T Consensus 410 ~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki 453 (641)
T KOG0772|consen 410 FPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKI 453 (641)
T ss_pred CCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEe
Confidence 56788999999999999875 478999998886555444
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.9e-19 Score=188.60 Aligned_cols=245 Identities=13% Similarity=0.128 Sum_probs=205.4
Q ss_pred CcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc-----------
Q psy10778 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN----------- 360 (556)
Q Consensus 292 ~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~----------- 360 (556)
+.+++++|...|.+.+||++..+........|.++|+...+.+....+++++.|..+++|-.+++...+
T Consensus 256 G~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~ 335 (910)
T KOG1539|consen 256 GNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA 335 (910)
T ss_pred CCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC
Confidence 456999999999999999999999999888999999999999999999999999999988666221100
Q ss_pred ---------------------------------------c--------cccc--------CCC-----------------
Q psy10778 361 ---------------------------------------K--------IEFC--------KPP----------------- 368 (556)
Q Consensus 361 ---------------------------------------~--------~~~~--------~~~----------------- 368 (556)
. .... .++
T Consensus 336 Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~ 415 (910)
T KOG1539|consen 336 PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVI 415 (910)
T ss_pred CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhccee
Confidence 0 0000 000
Q ss_pred --------------------eEeeCCC------ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe---CCCCCC
Q psy10778 369 --------------------TILLGHS------ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI---PCVDPN 419 (556)
Q Consensus 369 --------------------~~l~~h~------~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l---~~~h~~ 419 (556)
+..-.+. ..+++++.++.|+..+.|+..|+|-++++.+|-...++ .. | .
T Consensus 416 ~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~a-h-~ 493 (910)
T KOG1539|consen 416 TAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPA-H-K 493 (910)
T ss_pred EEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCcc-c-c
Confidence 0000122 56889999999999999999999999999999877777 35 7 8
Q ss_pred CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 420 TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
.+|+.++....++.+++++ .+|.++.||.+ +.++..+.....+.++.++ ... .+++.+..|-.|+++|+
T Consensus 494 ~~V~gla~D~~n~~~vsa~-----~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~h--r~s---~l~a~~~ddf~I~vvD~ 563 (910)
T KOG1539|consen 494 GEVTGLAVDGTNRLLVSAG-----ADGILKFWDFKKKVLKKSLRLGSSITGIVYH--RVS---DLLAIALDDFSIRVVDV 563 (910)
T ss_pred CceeEEEecCCCceEEEcc-----CcceEEEEecCCcceeeeeccCCCcceeeee--ehh---hhhhhhcCceeEEEEEc
Confidence 9999999999999999999 89999999998 5567777888899999988 454 68999999999999999
Q ss_pred CCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 499 YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 499 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
.+.+.++.+. +|.+.|++++|||||+.|++++.|++|++||+.++..+-.
T Consensus 564 ~t~kvvR~f~-gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~~lID~ 613 (910)
T KOG1539|consen 564 VTRKVVREFW-GHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTGTLIDG 613 (910)
T ss_pred hhhhhhHHhh-ccccceeeeEeCCCCcEEEEeecCCcEEEEeccCcceeee
Confidence 9999999999 8999999999999999999999999999999999776543
|
|
| >KOG0772|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.6e-20 Score=183.25 Aligned_cols=207 Identities=14% Similarity=0.200 Sum_probs=163.4
Q ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
+|...++|.+|+|+. ..++|++.||++|+|++.......+.+. .+...+..-+++.++|++++++||+|+.||+|.
T Consensus 266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik---~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIK---TKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQ 342 (641)
T ss_pred CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEe---eccCCCcccCceeeecCCCcchhhhcccCCcee
Confidence 799999999999974 5789999999999999986532211111 111234556789999999999999999999999
Q ss_pred EEeCCCCe--EEEEeCCCCCCC--CeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEee---cCCCeEEEE
Q psy10778 401 LWDINTIG--YIREIPCVDPNT--PVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLA---SELRITSVT 471 (556)
Q Consensus 401 iwdl~~~~--~v~~l~~~h~~~--~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~---~~~~i~~i~ 471 (556)
+|+..... ....+...| .. .|++|+||++|++|++-+ .|+++++||++ .+++.... ..-.-+.++
T Consensus 343 ~W~~~~~~v~p~~~vk~AH-~~g~~Itsi~FS~dg~~LlSRg-----~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~ 416 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAH-LPGQDITSISFSYDGNYLLSRG-----FDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCC 416 (641)
T ss_pred eeecCCcccccceEeeecc-CCCCceeEEEeccccchhhhcc-----CCCceeeeeccccccchhhhcCCCccCCCCccc
Confidence 99985432 112222215 44 899999999999999998 89999999997 45555442 345668899
Q ss_pred EeeCCCCCcceEEEEEeC------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 472 FSNAPEGVSQNVIVTGHS------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|| |+. ++|++|++ .|.+.+||..+...+..+. -....|..+.|+|.-+.|.+|+.||.++|+==++
T Consensus 417 FS--Pd~---kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~-i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyYdp~ 488 (641)
T KOG0772|consen 417 FS--PDD---KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID-ISTASVVRCLWHPKLNQIFAGSGDGTAHVYYDPN 488 (641)
T ss_pred cC--CCc---eEEEecccccCCCCCceEEEEeccceeeEEEec-CCCceEEEEeecchhhheeeecCCCceEEEECcc
Confidence 99 888 89999874 5789999999999999997 4578899999999988999999999999875544
|
|
| >KOG0641|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.4e-18 Score=156.92 Aligned_cols=227 Identities=18% Similarity=0.164 Sum_probs=178.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcc---eE-cCCCCCceEEEEEcCC----CCEEEEEe-CCCcEEEEEeeeccCccccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATP---VI-RPPLGATIATATTAPD----CHTLWLGL-TSGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~---~~-~~~h~~~V~~i~~s~d----g~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
++++|++|.+|++.......... .+ ...|.+.|+.++|-.+ |..|++++ .|..|++-|...+
T Consensus 103 liatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g--------- 173 (350)
T KOG0641|consen 103 LIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRG--------- 173 (350)
T ss_pred eEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCC---------
Confidence 89999999999996554221111 11 1258999999999743 56777765 4555666566555
Q ss_pred CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-C----CCCCeeEEEEeCCCCeEEEEeec
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-D----PNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h----~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
+....+.||++-|.++. +-++-++++|+.|.+|+.||++-...++++... | ..+.|.++++.|.|+.++++.
T Consensus 174 ~~~~a~sghtghilaly-swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~-- 250 (350)
T KOG0641|consen 174 QGFHALSGHTGHILALY-SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGH-- 250 (350)
T ss_pred CcceeecCCcccEEEEE-EecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeecc--
Confidence 56688999999998873 334779999999999999999988888876531 1 036799999999999999998
Q ss_pred CcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe----cCCCCCC
Q psy10778 441 TKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL----NTNVALP 514 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~----~~~h~~~ 514 (556)
.|....+||++ |+.++.+ .|...|.|+.|+ |.. .++++++.|..|++-|+. |.+..++ ...|...
T Consensus 251 ---~dssc~lydirg~r~iq~f~phsadir~vrfs--p~a---~yllt~syd~~ikltdlq-gdla~el~~~vv~ehkdk 321 (350)
T KOG0641|consen 251 ---ADSSCMLYDIRGGRMIQRFHPHSADIRCVRFS--PGA---HYLLTCSYDMKIKLTDLQ-GDLAHELPIMVVAEHKDK 321 (350)
T ss_pred ---CCCceEEEEeeCCceeeeeCCCccceeEEEeC--CCc---eEEEEecccceEEEeecc-cchhhcCceEEEEeccCc
Confidence 89999999999 6788877 578999999999 777 899999999999999984 3322222 1268888
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
+..+.|+|..--+++.+.|.++.+|.++
T Consensus 322 ~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 322 AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999889999999999999874
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-19 Score=167.16 Aligned_cols=242 Identities=14% Similarity=0.157 Sum_probs=182.2
Q ss_pred eEEeccCCCeEEEEeCCCCCC----cceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPA----TPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~----~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
-+|+++.|++++|||..+... ....+ .|.+.|..+.|.+- |+.+|+++.|+++.||.-...............
T Consensus 27 RmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wr-ah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ 105 (361)
T KOG2445|consen 27 RMATCSSDQTVKIWDSTSDSGTWSCTSSWR-AHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRR 105 (361)
T ss_pred eeeeccCCCcEEEEeccCCCCceEEeeeEE-ecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEE
Confidence 688999999999999654322 22333 69999999999864 899999999999999987533333333334556
Q ss_pred eEeeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCe------EEEEeC-------CCCCCCCeeEEEEeCC---
Q psy10778 369 TILLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIG------YIREIP-------CVDPNTPVSHVTMSET--- 430 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~------~v~~l~-------~~h~~~~V~~l~~sp~--- 430 (556)
.++...++.|+++.|+|. |-.+++++.||.++||+.-.-- ....+. . + ..+..|+.|+|.
T Consensus 106 ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~-~-~~~~~CvsWn~sr~~ 183 (361)
T KOG2445|consen 106 TTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGK-N-KQPCFCVSWNPSRMH 183 (361)
T ss_pred EEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCccc-c-cCcceEEeecccccc
Confidence 788889999999999995 5589999999999999865422 122222 1 3 567889999974
Q ss_pred CCeEEEEeecCcCCCCeEEEEEeC--CcE---EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----
Q psy10778 431 NGEIASVLQTTKTGGSILRLHTIN--AQL---ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK---- 500 (556)
Q Consensus 431 ~~~i~s~s~~~~~~d~~I~iwdi~--g~~---i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~---- 500 (556)
...||+|+.+....-+.++||..+ ++. +.++ .+..+|+.++|.| .-|+...+||+++.|| |+||.+..
T Consensus 184 ~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAP-n~Gr~y~~lAvA~kDg-v~I~~v~~~~s~ 261 (361)
T KOG2445|consen 184 EPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAP-NIGRSYHLLAVATKDG-VRIFKVKVARSA 261 (361)
T ss_pred CceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeecc-ccCCceeeEEEeecCc-EEEEEEeeccch
Confidence 468888885433344688888775 422 2222 4788999999995 3455568999999999 99999852
Q ss_pred ----------------CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 501 ----------------LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 501 ----------------~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
-+.+..+. +|.+.|..+.|.-.|..|.+.+.||+|++|...
T Consensus 262 i~~ee~~~~~~~~~l~v~~vs~~~-~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 262 IEEEEVLAPDLMTDLPVEKVSELD-DHNGEVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred hhhhcccCCCCccccceEEeeecc-CCCCceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 12344455 899999999999999999999999999999854
|
|
| >KOG0267|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-21 Score=202.34 Aligned_cols=218 Identities=15% Similarity=0.210 Sum_probs=193.1
Q ss_pred ccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 299 NECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+..+-.+++|+.+.. ..|...|.|+..-..++.+++|+.|..+-+|.+... ..+..+.+|.++|
T Consensus 10 ~~~~t~Lr~~~~~~~-------~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp---------~~i~S~~~hespI 73 (825)
T KOG0267|consen 10 TKRATKLRVWDTREF-------VAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKP---------NAITSLTGHESPI 73 (825)
T ss_pred eeeeeccccccchhh-------hhhhhhhceeeeeccceeeccCCCceeeccccccCC---------chhheeeccCCcc
Confidence 344456677776531 258888888888778899999999999999998754 3445689999999
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcE
Q psy10778 379 TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQL 457 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~ 457 (556)
-++.|+++..+|++|+.+|+|++||+..++.++++.+ | ...+.++.|+|-+.+.+.++ .|+.+++||++ ..+
T Consensus 74 eSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtg-h-~~~~~sv~f~P~~~~~a~gS-----tdtd~~iwD~Rk~Gc 146 (825)
T KOG0267|consen 74 ESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTG-H-LLNITSVDFHPYGEFFASGS-----TDTDLKIWDIRKKGC 146 (825)
T ss_pred eeeecCcchhhhcccccCCceeeeehhhhhhhhhhhc-c-ccCcceeeeccceEEecccc-----ccccceehhhhccCc
Confidence 9999999999999999999999999999999999999 9 99999999999999998888 89999999998 556
Q ss_pred EEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 458 ITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 458 i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
...++ |...+.++.|+ |+| ++++.|++|.+++|||...|+....|. .|.+.+.++.|+|..-++++|+.|+.|
T Consensus 147 ~~~~~s~~~vv~~l~ls--P~G---r~v~~g~ed~tvki~d~~agk~~~ef~-~~e~~v~sle~hp~e~Lla~Gs~d~tv 220 (825)
T KOG0267|consen 147 SHTYKSHTRVVDVLRLS--PDG---RWVASGGEDNTVKIWDLTAGKLSKEFK-SHEGKVQSLEFHPLEVLLAPGSSDRTV 220 (825)
T ss_pred eeeecCCcceeEEEeec--CCC---ceeeccCCcceeeeecccccccccccc-cccccccccccCchhhhhccCCCCcee
Confidence 66664 66788999999 999 999999999999999999999999998 899999999999999999999999999
Q ss_pred EEEEcCCCC
Q psy10778 537 IIWESSSHN 545 (556)
Q Consensus 537 ~vwdl~~~~ 545 (556)
++||+++-+
T Consensus 221 ~f~dletfe 229 (825)
T KOG0267|consen 221 RFWDLETFE 229 (825)
T ss_pred eeeccceeE
Confidence 999999743
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=189.20 Aligned_cols=225 Identities=16% Similarity=0.254 Sum_probs=190.1
Q ss_pred eEEeccCCCeEEEEeCCCC-CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKEL-PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.||.|++|+..+. ..-..+. .+...|.+++.. +..|++|+.+++|.+|....+ +.-..+..
T Consensus 27 fi~tcgsdg~ir~~~~~sd~e~P~ti~-~~g~~v~~ia~~--s~~f~~~s~~~tv~~y~fps~---------~~~~iL~R 94 (933)
T KOG1274|consen 27 FICTCGSDGDIRKWKTNSDEEEPETID-ISGELVSSIACY--SNHFLTGSEQNTVLRYKFPSG---------EEDTILAR 94 (933)
T ss_pred EEEEecCCCceEEeecCCcccCCchhh-ccCceeEEEeec--ccceEEeeccceEEEeeCCCC---------Cccceeee
Confidence 7778889999999998765 2223332 267778887754 569999999999999999876 33345666
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.+-++++++++.+|+++|.||.|-.|++-++.+......+.+ | .++|.++.++|.+..+|+.+ .+|.|++||+
T Consensus 95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrg-h-~apVl~l~~~p~~~fLAvss-----~dG~v~iw~~ 167 (933)
T KOG1274|consen 95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRG-H-DAPVLQLSYDPKGNFLAVSS-----CDGKVQIWDL 167 (933)
T ss_pred eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecc-c-CCceeeeeEcCCCCEEEEEe-----cCceEEEEEc
Confidence 778999999999999999999999999999999999999999 9 99999999999999999998 8999999999
Q ss_pred C-CcEEEEee---------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-CCCCeEEEEEec
Q psy10778 454 N-AQLITSLA---------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-VALPVIAVTYSC 522 (556)
Q Consensus 454 ~-g~~i~~~~---------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~s~ 522 (556)
. +.+..++. ....+..++|+ |+| ..+++...|+.|++|+...+.....+... +...+..++|+|
T Consensus 168 ~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~--Pk~---g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsP 242 (933)
T KOG1274|consen 168 QDGILSKTLTGVDKDNEFILSRICTRLAWH--PKG---GTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSP 242 (933)
T ss_pred ccchhhhhcccCCccccccccceeeeeeec--CCC---CeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcC
Confidence 7 55544442 13456788999 887 67888888999999999999988888763 344599999999
Q ss_pred CCCEEEEEcCCCcEEEEEcCC
Q psy10778 523 DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+|++||+++.||.|.|||+++
T Consensus 243 nG~YiAAs~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 243 NGKYIAASTLDGQILVWNVDT 263 (933)
T ss_pred CCcEEeeeccCCcEEEEeccc
Confidence 999999999999999999996
|
|
| >KOG0308|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=8e-20 Score=186.80 Aligned_cols=235 Identities=14% Similarity=0.152 Sum_probs=193.4
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEE-cCCCCEEEEEeCCCcEEEEEeeeccCc-ccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATT-APDCHTLWLGLTSGNILVYEYELNAST-NKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~-s~dg~~l~tgs~Dg~I~vwd~~~~~~~-~~~~~~~~~~~ 370 (556)
.+.++|.|-+|++|+...+ -+..++. .|.+-|.|+++ .++...+|+||-|+.|.+||+.++... -...+......
T Consensus 87 tlIS~SsDtTVK~W~~~~~~~~c~stir-~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~s 165 (735)
T KOG0308|consen 87 TLISASSDTTVKVWNAHKDNTFCMSTIR-THKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNS 165 (735)
T ss_pred ceEEecCCceEEEeecccCcchhHhhhh-cccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcccccccc
Confidence 6777899999999998866 3444554 79999999999 788889999999999999999976320 00011122333
Q ss_pred ee-CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 LL-GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+. |+...|.+++.++.|..+++|+..+.+++||.++++.+..+.+ | ..-|+++..++||..+++++ .||+|+
T Consensus 166 l~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrG-H-TdNVr~ll~~dDGt~~ls~s-----SDgtIr 238 (735)
T KOG0308|consen 166 LGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRG-H-TDNVRVLLVNDDGTRLLSAS-----SDGTIR 238 (735)
T ss_pred CCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeec-c-ccceEEEEEcCCCCeEeecC-----CCceEE
Confidence 44 9999999999999999999999999999999999999999999 9 99999999999999999999 899999
Q ss_pred EEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 450 LHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 450 iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
+||++ .+++.++ .|...+.++..+ ++- ..+++|+.||.|..=|+++......+- ..+.+|..+..+.+..-+
T Consensus 239 lWdLgqQrCl~T~~vH~e~VWaL~~~--~sf---~~vYsG~rd~~i~~Tdl~n~~~~tlic-k~daPv~~l~~~~~~~~~ 312 (735)
T KOG0308|consen 239 LWDLGQQRCLATYIVHKEGVWALQSS--PSF---THVYSGGRDGNIYRTDLRNPAKSTLIC-KEDAPVLKLHLHEHDNSV 312 (735)
T ss_pred eeeccccceeeeEEeccCceEEEeeC--CCc---ceEEecCCCCcEEecccCCchhheEee-cCCCchhhhhhccccCCc
Confidence 99998 6777777 477789999988 776 899999999999999998843333332 346788888888666556
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
-+++.|+.|.-|..+-
T Consensus 313 WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 313 WVTTTDSSIKRWKLEP 328 (735)
T ss_pred eeeeccccceecCCcc
Confidence 7788899999997654
|
|
| >KOG0294|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.6e-19 Score=166.89 Aligned_cols=199 Identities=18% Similarity=0.315 Sum_probs=170.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC--EEEEEcCCCcE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS--VAVSSSEDGTC 399 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I 399 (556)
.|.++|+++|. ++.++|+||.|-+|+|||+... .....+..|.+.|+++.|.+... .|++|++||.|
T Consensus 41 aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~---------~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i 109 (362)
T KOG0294|consen 41 AHAGSITALAV--SGPYVASGSSDETIHIYDMRKR---------KQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHI 109 (362)
T ss_pred ccccceeEEEe--cceeEeccCCCCcEEEEeccch---------hhhcceeccccceEEEEecCCcchhheeeecCCCcE
Confidence 69999999998 4789999999999999999977 55678889999999999999875 89999999999
Q ss_pred EEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe-CCcEEEEeecCCCeEEEEEeeCCCC
Q psy10778 400 LLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI-NAQLITSLASELRITSVTFSNAPEG 478 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi-~g~~i~~~~~~~~i~~i~~s~~pdg 478 (556)
.+|+....+.+.+++. | .+.|+.++++|.++.-++.+ .|+.+++||+ +|+.-.........+.+.|+ |.|
T Consensus 110 ~iw~~~~W~~~~slK~-H-~~~Vt~lsiHPS~KLALsVg-----~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~--~~G 180 (362)
T KOG0294|consen 110 IIWRVGSWELLKSLKA-H-KGQVTDLSIHPSGKLALSVG-----GDQVLRTWNLVRGRVAFVLNLKNKATLVSWS--PQG 180 (362)
T ss_pred EEEEcCCeEEeeeecc-c-ccccceeEecCCCceEEEEc-----CCceeeeehhhcCccceeeccCCcceeeEEc--CCC
Confidence 9999999999999999 9 89999999999999988888 8999999998 57766555555556669999 888
Q ss_pred CcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 479 VSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 479 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
.+++.+..+ .|-+|.+.+.+....+. ....+.++.|. ++..|++|.+|+.|.+||..+....
T Consensus 181 ---d~F~v~~~~-~i~i~q~d~A~v~~~i~--~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~ 242 (362)
T KOG0294|consen 181 ---DHFVVSGRN-KIDIYQLDNASVFREIE--NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPL 242 (362)
T ss_pred ---CEEEEEecc-EEEEEecccHhHhhhhh--ccccceeeeec-CCceEEEecCCceEEEeccCCCccc
Confidence 677777754 68899998888877776 34667788776 4678899999999999999874433
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.84 E-value=5.1e-20 Score=182.81 Aligned_cols=233 Identities=12% Similarity=0.191 Sum_probs=193.1
Q ss_pred cCCCeEEEEeCCCCC---CcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC
Q psy10778 300 ECDNLIRLKMSKELP---ATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS 375 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~---~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~ 375 (556)
+..|.|+|||+.... .+..+.+ ....-|++|...|||+.|++|+.-.++.|||+..... .....+....
T Consensus 437 gGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastlsiWDLAapTp-------rikaeltssa 509 (705)
T KOG0639|consen 437 GGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPTP-------RIKAELTSSA 509 (705)
T ss_pred cCCCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEeccccceeeeeeccCCCc-------chhhhcCCcc
Confidence 456899999996431 2222222 2456789999999999999999999999999986511 1223344445
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN- 454 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~- 454 (556)
-...+++.+||.++..++..||.|.|||+.+...++.+.+ | ...+.||.++++|..|.+|+ -|++|+.||++
T Consensus 510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqG-h-tDGascIdis~dGtklWTGG-----lDntvRcWDlre 582 (705)
T KOG0639|consen 510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQG-H-TDGASCIDISKDGTKLWTGG-----LDNTVRCWDLRE 582 (705)
T ss_pred hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccC-C-CCCceeEEecCCCceeecCC-----Cccceeehhhhh
Confidence 5678899999999999999999999999999999999999 9 99999999999999999999 99999999998
Q ss_pred CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 455 AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
++.+......+.|.++.++ |.+ .+|++|..++.+.+... ++.....+. -|++.|.++.|.+.|+.+++.+.|.
T Consensus 583 grqlqqhdF~SQIfSLg~c--P~~---dWlavGMens~vevlh~-skp~kyqlh-lheScVLSlKFa~cGkwfvStGkDn 655 (705)
T KOG0639|consen 583 GRQLQQHDFSSQIFSLGYC--PTG---DWLAVGMENSNVEVLHT-SKPEKYQLH-LHESCVLSLKFAYCGKWFVSTGKDN 655 (705)
T ss_pred hhhhhhhhhhhhheecccC--CCc---cceeeecccCcEEEEec-CCccceeec-ccccEEEEEEecccCceeeecCchh
Confidence 7777777778999999999 888 89999999999988886 444445555 5899999999999999999999999
Q ss_pred cEEEEEcCCCCCcCeeecc
Q psy10778 535 LVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 535 ~V~vwdl~~~~~~~~~~~~ 553 (556)
-+..|...-+..+--.+..
T Consensus 656 lLnawrtPyGasiFqskE~ 674 (705)
T KOG0639|consen 656 LLNAWRTPYGASIFQSKES 674 (705)
T ss_pred hhhhccCccccceeecccc
Confidence 9999998887665444433
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=167.68 Aligned_cols=213 Identities=22% Similarity=0.282 Sum_probs=170.6
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccc-cccCC-----CeEeeCCCccEEEEEEcc-CCCEEEEE
Q psy10778 322 PLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKI-EFCKP-----PTILLGHSACVTDLYLCA-GFSVAVSS 393 (556)
Q Consensus 322 ~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~-~~~~~-----~~~l~~h~~~V~~l~~s~-~~~~l~sg 393 (556)
.|.++|+++...+ .|+++++|+.||.|.|||++........ ..++. ...-.+|+-.|..+.|-| |..++.++
T Consensus 41 ~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtss 120 (397)
T KOG4283|consen 41 PHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSS 120 (397)
T ss_pred cCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecc
Confidence 6899999999987 5899999999999999999865321110 00111 122347888999999998 66699999
Q ss_pred cCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC---CeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeE
Q psy10778 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN---GEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRIT 468 (556)
Q Consensus 394 s~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~---~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~ 468 (556)
|-|.+++|||.++.+....++- .+.|.+-+++|-. ..||+|. .+-.|++.|+. |..-.++ .|.+.|.
T Consensus 121 SFDhtlKVWDtnTlQ~a~~F~m---e~~VYshamSp~a~sHcLiA~gt-----r~~~VrLCDi~SGs~sH~LsGHr~~vl 192 (397)
T KOG4283|consen 121 SFDHTLKVWDTNTLQEAVDFKM---EGKVYSHAMSPMAMSHCLIAAGT-----RDVQVRLCDIASGSFSHTLSGHRDGVL 192 (397)
T ss_pred cccceEEEeecccceeeEEeec---CceeehhhcChhhhcceEEEEec-----CCCcEEEEeccCCcceeeeccccCceE
Confidence 9999999999999998888887 6889998998853 4666666 88999999997 7777777 4789999
Q ss_pred EEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC-eEEEEec-------------CCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL-AHLLTLN-------------TNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~-------------~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
++.|+|..+ -+|++|+.||.|++||++.. .+...+. ..|.+.|.+++|+.++.++++++.|.
T Consensus 193 aV~Wsp~~e----~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~ 268 (397)
T KOG4283|consen 193 AVEWSPSSE----WVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDD 268 (397)
T ss_pred EEEeccCce----eEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCcc
Confidence 999995444 48999999999999999654 2222221 15778899999999999999999999
Q ss_pred cEEEEEcCCCCC
Q psy10778 535 LVIIWESSSHNR 546 (556)
Q Consensus 535 ~V~vwdl~~~~~ 546 (556)
++++|+..+++.
T Consensus 269 r~r~wn~~~G~n 280 (397)
T KOG4283|consen 269 RIRVWNMESGRN 280 (397)
T ss_pred ceEEeecccCcc
Confidence 999999988554
|
|
| >KOG0278|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-20 Score=170.73 Aligned_cols=230 Identities=12% Similarity=0.116 Sum_probs=203.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|.+++.||.=-+.+-+++..+..+. +|.+.|.....+.+...-|+++.|-+-+|||..++ ..+..+ .|
T Consensus 31 flisa~kd~~pmlr~g~tgdwigtfe-ghkgavw~~~l~~na~~aasaaadftakvw~a~tg---------delhsf-~h 99 (334)
T KOG0278|consen 31 FLISASKDGKPMLRNGDTGDWIGTFE-GHKGAVWSATLNKNATRAASAAADFTAKVWDAVTG---------DELHSF-EH 99 (334)
T ss_pred EEEEeccCCCchhccCCCCCcEEeee-ccCcceeeeecCchhhhhhhhcccchhhhhhhhhh---------hhhhhh-hh
Confidence 67788999999999999999999997 99999999999999888999999999999999887 333333 58
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
+.-|.+++|+.|.+.|++|+.+..++|+|+++.+ +...+.+ | .+.|+.+.|....+.|++.+ .+++||+||.
T Consensus 100 khivk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~g-h-tg~Ir~v~wc~eD~~iLSSa-----dd~tVRLWD~ 172 (334)
T KOG0278|consen 100 KHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISG-H-TGGIRTVLWCHEDKCILSSA-----DDKTVRLWDH 172 (334)
T ss_pred hheeeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcC-C-CCcceeEEEeccCceEEeec-----cCCceEEEEe
Confidence 8899999999999999999999999999998764 4556778 8 89999999999999999987 8999999999
Q ss_pred C-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 454 N-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 454 ~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+ |..++++.....|+++.++ ++| ++| +-...+.|.+||..+..+++.+. ....|.+..++|+...+++|++
T Consensus 173 rTgt~v~sL~~~s~VtSlEvs--~dG---~il-Tia~gssV~Fwdaksf~~lKs~k--~P~nV~SASL~P~k~~fVaGge 244 (334)
T KOG0278|consen 173 RTGTEVQSLEFNSPVTSLEVS--QDG---RIL-TIAYGSSVKFWDAKSFGLLKSYK--MPCNVESASLHPKKEFFVAGGE 244 (334)
T ss_pred ccCcEEEEEecCCCCcceeec--cCC---CEE-EEecCceeEEeccccccceeecc--CccccccccccCCCceEEecCc
Confidence 8 9999999999999999999 898 444 55556889999999999999987 4688999999999999999999
Q ss_pred CCcEEEEEcCCCCCcCee
Q psy10778 533 EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~ 550 (556)
|+.++.||..+++.+-.+
T Consensus 245 d~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 245 DFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred ceEEEEEeccCCceeeec
Confidence 999999999997766553
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=2.4e-19 Score=176.26 Aligned_cols=233 Identities=15% Similarity=0.140 Sum_probs=179.7
Q ss_pred cceEEeccCCCeEEEEeCCCC-CCcceE-------------------cCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEE
Q psy10778 293 AGMICWNECDNLIRLKMSKEL-PATPVI-------------------RPPLGATIATATTAPD-CHTLWLGLTSGNILVY 351 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~-~~~~~~-------------------~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vw 351 (556)
..|+|.|.-|-.|.|||+.-. ...+.+ ..+|.+.|.+++|+.. ...||+||.|.+|++|
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lW 271 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKLW 271 (463)
T ss_pred cceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEEE
Confidence 349999999999999998521 111111 1258889999999865 5689999999999999
Q ss_pred EeeeccCcccccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeC
Q psy10778 352 EYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp 429 (556)
|+.++ ++..++..|...|.++.|+|. ...|++||.|++|.+.|.+.. ..-..++. .+.|-.++|.|
T Consensus 272 D~~~g---------~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~---~g~VEkv~w~~ 339 (463)
T KOG0270|consen 272 DVDTG---------KPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKF---DGEVEKVAWDP 339 (463)
T ss_pred EcCCC---------CcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEe---ccceEEEEecC
Confidence 99988 778889999999999999984 568999999999999999942 23344554 67899999999
Q ss_pred CCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE--E
Q psy10778 430 TNGEIASVLQTTKTGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH--L 504 (556)
Q Consensus 430 ~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~--~ 504 (556)
.....+.++. .||+|+-+|++ |+++.++ .|.+.|.+++++.... .+++|++.|+.|++|++..-.. +
T Consensus 340 ~se~~f~~~t----ddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p----~~l~t~s~d~~Vklw~~~~~~~~~v 411 (463)
T KOG0270|consen 340 HSENSFFVST----DDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTP----GLLSTASTDKVVKLWKFDVDSPKSV 411 (463)
T ss_pred CCceeEEEec----CCceEEeeecCCCCCceeEEEeccCCcceEEecCCCC----cceeeccccceEEEEeecCCCCccc
Confidence 8765554443 89999999998 7888887 4889999999994333 5899999999999999854332 2
Q ss_pred EEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCC
Q psy10778 505 LTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 505 ~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
..-. -.-+...|.++.|+- -.++.|+..+.++|||+.+...
T Consensus 412 ~~~~-~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 412 KEHS-FKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cccc-ccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 2211 112346667777765 4677788888999999987443
|
|
| >KOG1332|consensus | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.4e-20 Score=166.78 Aligned_cols=212 Identities=20% Similarity=0.238 Sum_probs=170.6
Q ss_pred eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--CCCEEEEEcC
Q psy10778 318 VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSE 395 (556)
Q Consensus 318 ~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~ 395 (556)
.+...|.+.|..+...--|++|||++.|++|+|+....+.. ..++.+|.||.++|..++|.. -|.+|+|++.
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~------s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsY 78 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQ------SKLLAELTGHSGPVWKVAWAHPKFGTILASCSY 78 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCC------ceeeeEecCCCCCeeEEeecccccCcEeeEeec
Confidence 44457999999988888899999999999999999987622 145689999999999999987 7899999999
Q ss_pred CCcEEEEeCCCCeEE--EEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeCCc--EE-E--EeecCCC
Q psy10778 396 DGTCLLWDINTIGYI--REIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTINAQ--LI-T--SLASELR 466 (556)
Q Consensus 396 Dg~I~iwdl~~~~~v--~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~g~--~i-~--~~~~~~~ 466 (556)
||.|+||.-..++.. ..... | .+.|++++|.|. |-.|++++ .||.|.+.+.+.. -. . ...|.-.
T Consensus 79 DgkVIiWke~~g~w~k~~e~~~-h-~~SVNsV~wapheygl~Lacas-----SDG~vsvl~~~~~g~w~t~ki~~aH~~G 151 (299)
T KOG1332|consen 79 DGKVIIWKEENGRWTKAYEHAA-H-SASVNSVAWAPHEYGLLLACAS-----SDGKVSVLTYDSSGGWTTSKIVFAHEIG 151 (299)
T ss_pred CceEEEEecCCCchhhhhhhhh-h-cccceeecccccccceEEEEee-----CCCcEEEEEEcCCCCccchhhhhccccc
Confidence 999999998877433 34455 8 899999999986 45677777 8999999998632 21 1 2247789
Q ss_pred eEEEEEeeCC-CC--------CcceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecCC----CEEEEEc
Q psy10778 467 ITSVTFSNAP-EG--------VSQNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCDS----QHLYASN 531 (556)
Q Consensus 467 i~~i~~s~~p-dg--------~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~dg----~~l~sgs 531 (556)
|++++|.|.. .| ...+.|++|+.|..|+||+..+++ ..+++. +|...|+.++|.|.- ..|++++
T Consensus 152 vnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~-~H~dwVRDVAwaP~~gl~~s~iAS~S 230 (299)
T KOG1332|consen 152 VNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE-GHKDWVRDVAWAPSVGLPKSTIASCS 230 (299)
T ss_pred cceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh-hcchhhhhhhhccccCCCceeeEEec
Confidence 9999999531 01 123679999999999999987653 445566 899999999999964 6799999
Q ss_pred CCCcEEEEEcCC
Q psy10778 532 TEGLVIIWESSS 543 (556)
Q Consensus 532 ~Dg~V~vwdl~~ 543 (556)
.||+|.||....
T Consensus 231 qDg~viIwt~~~ 242 (299)
T KOG1332|consen 231 QDGTVIIWTKDE 242 (299)
T ss_pred CCCcEEEEEecC
Confidence 999999999875
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=4.1e-19 Score=171.29 Aligned_cols=210 Identities=17% Similarity=0.205 Sum_probs=169.5
Q ss_pred CCCCCceEEEEEcCCC--CEEEEEeCCCcEEEEEeeecc-------CcccccccCCCeEeeCCCccEEEEEEccC-CCEE
Q psy10778 321 PPLGATIATATTAPDC--HTLWLGLTSGNILVYEYELNA-------STNKIEFCKPPTILLGHSACVTDLYLCAG-FSVA 390 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg--~~l~tgs~Dg~I~vwd~~~~~-------~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l 390 (556)
..|.+.++.+..++-+ .+.++-+..|.|.||++...- ...+....+++.++.+|...-.+|+|||- ...+
T Consensus 148 i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~L 227 (440)
T KOG0302|consen 148 IPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRL 227 (440)
T ss_pred cccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeeccccccccc
Confidence 3688888888777654 455566788999999986321 11112334788899999999999999993 3468
Q ss_pred EEEcCCCcEEEEeCCCCeEE---EEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeC-C---cEEEEee
Q psy10778 391 VSSSEDGTCLLWDINTIGYI---REIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTIN-A---QLITSLA 462 (556)
Q Consensus 391 ~sgs~Dg~I~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~-g---~~i~~~~ 462 (556)
+||..-+.|++|...++... +.+.+ | ...|-.++|||.. +.|++|+ .|++|+|||++ + ..+.+..
T Consensus 228 lsGDc~~~I~lw~~~~g~W~vd~~Pf~g-H-~~SVEDLqWSptE~~vfaScS-----~DgsIrIWDiRs~~~~~~~~~kA 300 (440)
T KOG0302|consen 228 LSGDCVKGIHLWEPSTGSWKVDQRPFTG-H-TKSVEDLQWSPTEDGVFASCS-----CDGSIRIWDIRSGPKKAAVSTKA 300 (440)
T ss_pred ccCccccceEeeeeccCceeecCccccc-c-ccchhhhccCCccCceEEeee-----cCceEEEEEecCCCccceeEeec
Confidence 89988899999999887653 34667 8 8999999999975 5677777 89999999998 4 3556667
Q ss_pred cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC---CeEEEEecCCCCCCeEEEEEecC-CCEEEEEcCCCcEEE
Q psy10778 463 SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK---LAHLLTLNTNVALPVIAVTYSCD-SQHLYASNTEGLVII 538 (556)
Q Consensus 463 ~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~---~~~~~~~~~~h~~~V~~l~~s~d-g~~l~sgs~Dg~V~v 538 (556)
|.+.|+.|.|+ ..- .+|++|+.||+++|||+++ ++++..+. .|..+|+++.|+|. ...+++++.|..|.+
T Consensus 301 h~sDVNVISWn--r~~---~lLasG~DdGt~~iwDLR~~~~~~pVA~fk-~Hk~pItsieW~p~e~s~iaasg~D~Qiti 374 (440)
T KOG0302|consen 301 HNSDVNVISWN--RRE---PLLASGGDDGTLSIWDLRQFKSGQPVATFK-YHKAPITSIEWHPHEDSVIAASGEDNQITI 374 (440)
T ss_pred cCCceeeEEcc--CCc---ceeeecCCCceEEEEEhhhccCCCcceeEE-eccCCeeEEEeccccCceEEeccCCCcEEE
Confidence 89999999999 555 6899999999999999975 56788888 79999999999995 478888999999999
Q ss_pred EEcCC
Q psy10778 539 WESSS 543 (556)
Q Consensus 539 wdl~~ 543 (556)
||+.-
T Consensus 375 WDlsv 379 (440)
T KOG0302|consen 375 WDLSV 379 (440)
T ss_pred EEeec
Confidence 99965
|
|
| >KOG0299|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-19 Score=172.91 Aligned_cols=222 Identities=14% Similarity=0.181 Sum_probs=182.3
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
..|+++|+.|..|.||+..+.+.+..+. +|.+.|.+++|-.....|++++.|++|++|+++.. ..+.++.
T Consensus 214 gkylatgg~d~~v~Iw~~~t~ehv~~~~-ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~---------s~vetly 283 (479)
T KOG0299|consen 214 GKYLATGGRDRHVQIWDCDTLEHVKVFK-GHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQL---------SYVETLY 283 (479)
T ss_pred CcEEEecCCCceEEEecCcccchhhccc-ccccceeeeeeecCccceeeeecCCceEEEehhHh---------HHHHHHh
Confidence 3499999999999999999998888876 89999999999988889999999999999999876 6678899
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
||.+.|.+|....-.+.+-+|+.|+++++|++.. +....+.+ + .+.+.|+++-.+ .++++|+ .+|.|.+|+
T Consensus 284 GHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~e-esqlifrg-~-~~sidcv~~In~-~HfvsGS-----dnG~IaLWs 354 (479)
T KOG0299|consen 284 GHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRG-G-EGSIDCVAFIND-EHFVSGS-----DNGSIALWS 354 (479)
T ss_pred CCccceeeechhcccceEEeccccceeEEEeccc-cceeeeeC-C-CCCeeeEEEecc-cceeecc-----CCceEEEee
Confidence 9999999999988888888888999999999954 33334445 6 788999999865 7889999 899999999
Q ss_pred eC-CcEEEEee--c-----------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCC
Q psy10778 453 IN-AQLITSLA--S-----------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL----AHLLTLNTNVALP 514 (556)
Q Consensus 453 i~-g~~i~~~~--~-----------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~----~~~~~~~~~h~~~ 514 (556)
+- .+++.+.. | +.+|++++.. |.. +++++|+.+|.|++|-+..+ +++..+. -.+-
T Consensus 355 ~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i--~~s---dL~asGS~~G~vrLW~i~~g~r~i~~l~~ls--~~Gf 427 (479)
T KOG0299|consen 355 LLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVI--PGS---DLLASGSWSGCVRLWKIEDGLRAINLLYSLS--LVGF 427 (479)
T ss_pred ecccCceeEeeccccccCCccccccccceeeeEec--ccC---ceEEecCCCCceEEEEecCCccccceeeecc--cccE
Confidence 96 55555442 2 1278999998 666 79999999999999988665 5666665 4688
Q ss_pred eEEEEEecCCCEEEEE-cCCCcEEEEE
Q psy10778 515 VIAVTYSCDSQHLYAS-NTEGLVIIWE 540 (556)
Q Consensus 515 V~~l~~s~dg~~l~sg-s~Dg~V~vwd 540 (556)
|++++|+++|+.+++| +...++-=|-
T Consensus 428 VNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 428 VNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EEEEEEccCCCEEEEecccccccceee
Confidence 9999999999966655 4444443343
|
|
| >KOG0300|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=6.4e-19 Score=166.19 Aligned_cols=199 Identities=13% Similarity=0.200 Sum_probs=174.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|.++|..++.......+.+++.|.+-+||.++++ .++.++.||.+.|++|.|++.+.+++++|.|++..|
T Consensus 146 GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg---------~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHI 216 (481)
T KOG0300|consen 146 GHKDGIWHVAADSTQPICGTASADHTARIWSLESG---------ACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHI 216 (481)
T ss_pred ccccceeeehhhcCCcceeecccccceeEEeeccc---------cceeeecccccceeeEEeccccceEEEccCCcchHH
Confidence 89999999998887789999999999999999998 888999999999999999999999999999999999
Q ss_pred EeC------CC------------------------------C----eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 402 WDI------NT------------------------------I----GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 402 wdl------~~------------------------------~----~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
|.. .. + .++..+.+ | .+.|.+..|-..|..+++++
T Consensus 217 W~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltg-H-~~vV~a~dWL~gg~Q~vTaS--- 291 (481)
T KOG0300|consen 217 WKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTG-H-RAVVSACDWLAGGQQMVTAS--- 291 (481)
T ss_pred HHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeec-c-ccceEehhhhcCcceeeeee---
Confidence 962 10 0 13345677 8 88899999999999999999
Q ss_pred cCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCCeEEE
Q psy10778 442 KTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LAHLLTLNTNVALPVIAV 518 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l 518 (556)
.|.+..+||+. |+++..+. |....+.++-+ |.. +++++.+.|.+.++||.+. ...+..|. +|...|+++
T Consensus 292 --WDRTAnlwDVEtge~v~~LtGHd~ELtHcstH--ptQ---rLVvTsSrDtTFRLWDFReaI~sV~VFQ-GHtdtVTS~ 363 (481)
T KOG0300|consen 292 --WDRTANLWDVETGEVVNILTGHDSELTHCSTH--PTQ---RLVVTSSRDTTFRLWDFREAIQSVAVFQ-GHTDTVTSV 363 (481)
T ss_pred --ccccceeeeeccCceeccccCcchhccccccC--Ccc---eEEEEeccCceeEeccchhhcceeeeec-ccccceeEE
Confidence 99999999998 88888874 67788888877 777 8999999999999999974 34566777 999999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 519 TYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 519 ~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|..+. .+++|+.|.+|+|||+++
T Consensus 364 vF~~dd-~vVSgSDDrTvKvWdLrN 387 (481)
T KOG0300|consen 364 VFNTDD-RVVSGSDDRTVKVWDLRN 387 (481)
T ss_pred EEecCC-ceeecCCCceEEEeeecc
Confidence 999865 578999999999999988
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.6e-17 Score=166.55 Aligned_cols=231 Identities=10% Similarity=0.097 Sum_probs=172.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.|+.|++|+..+++....+. .+ ..+..++++|+++.++++ +.|+.+++||+... +.+..+.
T Consensus 45 l~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~---------~~~~~~~- 112 (300)
T TIGR03866 45 LYVCASDSDTIQVIDLATGEVIGTLP-SG-PDPELFALHPNGKILYIANEDDNLVTVIDIETR---------KVLAEIP- 112 (300)
T ss_pred EEEEECCCCeEEEEECCCCcEEEecc-CC-CCccEEEECCCCCEEEEEcCCCCeEEEEECCCC---------eEEeEee-
Confidence 45677889999999999877665554 22 335678999999977655 56899999998764 2223333
Q ss_pred CCccEEEEEEccCCCEEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDG-TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg-~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+...+.+++|+|+++++++++.++ .+.+||..+++.+..+.. ...+..++|++++..+++++. .++.|++||
T Consensus 113 ~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~----~~~~v~i~d 185 (300)
T TIGR03866 113 VGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLV---DQRPRFAEFTADGKELWVSSE----IGGTVSVID 185 (300)
T ss_pred CCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEc---CCCccEEEECCCCCEEEEEcC----CCCEEEEEE
Confidence 233467899999999999888775 466789998877766554 345688999999998866542 589999999
Q ss_pred eC-CcEEEEeecC--------CCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 453 IN-AQLITSLASE--------LRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 453 i~-g~~i~~~~~~--------~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
++ ++.+..+... .....++|+ +++ +.+ ++...++.+.+||+.+++.+..+. +...+.+++|+|
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s--~dg---~~~~~~~~~~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~~~ 258 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLT--KDG---KTAFVALGPANRVAVVDAKTYEVLDYLL--VGQRVWQLAFTP 258 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEEC--CCC---CEEEEEcCCCCeEEEEECCCCcEEEEEE--eCCCcceEEECC
Confidence 97 6655554321 123568888 888 554 444567789999999888877664 345789999999
Q ss_pred CCCEEEEE-cCCCcEEEEEcCCCCCcCeee
Q psy10778 523 DSQHLYAS-NTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 523 dg~~l~sg-s~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+|++|+++ ..+|.|++||+.+++.+..++
T Consensus 259 ~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~ 288 (300)
T TIGR03866 259 DEKYLLTTNGVSNDVSVIDVAALKVIKSIK 288 (300)
T ss_pred CCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 99999886 468999999999987765553
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.3e-17 Score=167.08 Aligned_cols=229 Identities=14% Similarity=0.118 Sum_probs=172.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.|+.+++||..+++....+. .+ ..+.+++|+|+++.+ ++++.++.|++||..++ +....+..
T Consensus 3 ~~~s~~~d~~v~~~d~~t~~~~~~~~-~~-~~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~---------~~~~~~~~ 71 (300)
T TIGR03866 3 AYVSNEKDNTISVIDTATLEVTRTFP-VG-QRPRGITLSKDGKLLYVCASDSDTIQVIDLATG---------EVIGTLPS 71 (300)
T ss_pred EEEEecCCCEEEEEECCCCceEEEEE-CC-CCCCceEECCCCCEEEEEECCCCeEEEEECCCC---------cEEEeccC
Confidence 67788999999999999887766665 33 447789999999876 56778899999998765 23333444
Q ss_pred CCccEEEEEEccCCCEEEE-EcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC-CeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVS-SSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG-SILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~s-gs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d-~~I~iw 451 (556)
+.. +..++++|+++.+++ ++.|+.+++||+.+++.+..+.. ...+..++++|++..++++. .+ ..+..|
T Consensus 72 ~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~-----~~~~~~~~~ 142 (300)
T TIGR03866 72 GPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPV---GVEPEGMAVSPDGKIVVNTS-----ETTNMAHFI 142 (300)
T ss_pred CCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeC---CCCcceEEECCCCCEEEEEe-----cCCCeEEEE
Confidence 433 567899999987654 45689999999999888888775 45578899999999999887 44 457788
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEE-EEeCCCeEEEEeCCCCeEEEEecCC----C--CCCeEEEEEecC
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVIV-TGHSDGTIQLWSGYKLAHLLTLNTN----V--ALPVIAVTYSCD 523 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~-tg~~dg~I~iwd~~~~~~~~~~~~~----h--~~~V~~l~~s~d 523 (556)
|.+ ++.+........+.+++|+ +++ ..|+ ++..++.|++||+.+++.+..+... + ......++|+|+
T Consensus 143 d~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d 217 (300)
T TIGR03866 143 DTKTYEIVDNVLVDQRPRFAEFT--ADG---KELWVSSEIGGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKD 217 (300)
T ss_pred eCCCCeEEEEEEcCCCccEEEEC--CCC---CEEEEEcCCCCEEEEEEcCcceeeeeeeecccccccccCCccceEECCC
Confidence 987 5555555555567889999 888 6664 5556899999999999887766421 1 112457889999
Q ss_pred CCEEEE-EcCCCcEEEEEcCCCCCcC
Q psy10778 524 SQHLYA-SNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 524 g~~l~s-gs~Dg~V~vwdl~~~~~~~ 548 (556)
++.+++ .+.++.+.+||+.+++...
T Consensus 218 g~~~~~~~~~~~~i~v~d~~~~~~~~ 243 (300)
T TIGR03866 218 GKTAFVALGPANRVAVVDAKTYEVLD 243 (300)
T ss_pred CCEEEEEcCCCCeEEEEECCCCcEEE
Confidence 998655 4556789999998766543
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=9e-20 Score=189.73 Aligned_cols=197 Identities=19% Similarity=0.262 Sum_probs=159.8
Q ss_pred eEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeC
Q psy10778 327 IATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 327 V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl 404 (556)
+..+.|.. +.++|||++..|.|.+||+... ...+.+..+..|...++++.|++. -.+|+|||.||+|++||+
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~Dl 163 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKS------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDL 163 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCcc------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEee
Confidence 44566663 4679999999999999999863 111455678999999999999984 468999999999999999
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEEeCC--cEEEEe-ecCCCeEEEEEeeCCCCCc
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHTINA--QLITSL-ASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwdi~g--~~i~~~-~~~~~i~~i~~s~~pdg~~ 480 (556)
+..+...++.+ . ...|+.|+|+|. +..++++. +.|.+.+||++. +....+ .|.++|.|+.|+ |++
T Consensus 164 R~~~S~~t~~~-n-SESiRDV~fsp~~~~~F~s~~-----dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwh--Pnr-- 232 (839)
T KOG0269|consen 164 RSKKSKSTFRS-N-SESIRDVKFSPGYGNKFASIH-----DSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWH--PNR-- 232 (839)
T ss_pred ecccccccccc-c-chhhhceeeccCCCceEEEec-----CCceEEEeeccCchhHHHHhhcccCceEEEeec--CCC--
Confidence 99888888887 6 789999999996 45677776 899999999983 333333 689999999999 788
Q ss_pred ceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecCCCE-EEEEc--CCCcEEEEEcCC
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCDSQH-LYASN--TEGLVIIWESSS 543 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~dg~~-l~sgs--~Dg~V~vwdl~~ 543 (556)
.+||||+.|++|+|||+.+.+ ...++. ...+|.+++|-|+.++ |++++ .|-.|+|||++-
T Consensus 233 -~~lATGGRDK~vkiWd~t~~~~~~~~tIn--Tiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrR 297 (839)
T KOG0269|consen 233 -EWLATGGRDKMVKIWDMTDSRAKPKHTIN--TIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRR 297 (839)
T ss_pred -ceeeecCCCccEEEEeccCCCccceeEEe--ecceeeeeeeccCccchhhhhhccccceEEEEeecc
Confidence 899999999999999997554 445554 4689999999998754 55554 477999999975
|
|
| >KOG1036|consensus | Back alignment and domain information |
|---|
Probab=99.82 E-value=1.4e-17 Score=157.31 Aligned_cols=228 Identities=12% Similarity=0.111 Sum_probs=174.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
-+.+|+.||.|+.+|+.+++....- .|..+|+|+..++-...+++||+|++|++||.... .....+. .
T Consensus 67 ~~~~G~~dg~vr~~Dln~~~~~~ig--th~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~---------~~~~~~d-~ 134 (323)
T KOG1036|consen 67 TIVTGGLDGQVRRYDLNTGNEDQIG--THDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNK---------VVVGTFD-Q 134 (323)
T ss_pred eEEEeccCceEEEEEecCCcceeec--cCCCceEEEEeeccCCeEEEcccCccEEEEecccc---------ccccccc-c
Confidence 5778999999999999987655443 59999999999988889999999999999998853 1122222 2
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...|.|+... ++.|+.|+.|..+.+||+++.....+... .- .-.++++++-|++.=.++++ -+|.|.+=.+
T Consensus 135 ~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~l-kyqtR~v~~~pn~eGy~~sS-----ieGRVavE~~ 206 (323)
T KOG1036|consen 135 GKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPFQRRESSL-KYQTRCVALVPNGEGYVVSS-----IEGRVAVEYF 206 (323)
T ss_pred CceEEEEecc--CCEEEEeecCceEEEEEcccccchhhhccccc-eeEEEEEEEecCCCceEEEe-----ecceEEEEcc
Confidence 3378888776 67999999999999999998654332211 01 45789999999887778777 7899888666
Q ss_pred CCc-----EEEEeec----------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEE
Q psy10778 454 NAQ-----LITSLAS----------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAV 518 (556)
Q Consensus 454 ~g~-----~i~~~~~----------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 518 (556)
+.. ....+++ --+|++|+|+ |-. ..++||+.||.|.+||+.+.+.+..+. .....|.++
T Consensus 207 d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fh--p~~---~tfaTgGsDG~V~~Wd~~~rKrl~q~~-~~~~SI~sl 280 (323)
T KOG1036|consen 207 DDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFH--PIH---GTFATGGSDGIVNIWDLFNRKRLKQLA-KYETSISSL 280 (323)
T ss_pred CCchHHhhhceeEEeeecccCCceEEEEeceeEec--ccc---ceEEecCCCceEEEccCcchhhhhhcc-CCCCceEEE
Confidence 521 1122221 1378999999 554 689999999999999999999999987 567889999
Q ss_pred EEecCCCEEEEEcC-----CCc-------EEEEEcCCCCCcC
Q psy10778 519 TYSCDSQHLYASNT-----EGL-------VIIWESSSHNRTP 548 (556)
Q Consensus 519 ~~s~dg~~l~sgs~-----Dg~-------V~vwdl~~~~~~~ 548 (556)
+|+.+|..||++++ ... |.|.++.+.+..|
T Consensus 281 sfs~dG~~LAia~sy~ye~~~~~~~~~~~i~I~~l~d~e~~p 322 (323)
T KOG1036|consen 281 SFSMDGSLLAIASSYQYERADTPTHERNAIFIRDLTDYETKP 322 (323)
T ss_pred EeccCCCeEEEEechhhhcCCCCCCCCCceEEEeccccccCC
Confidence 99999999998874 223 7777776654443
|
|
| >KOG0639|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2.4e-19 Score=178.05 Aligned_cols=223 Identities=13% Similarity=0.127 Sum_probs=192.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
-|..|+.-.++.|||+.........+. ...-...+++.+||.+..+++..||.|.|||+... ..++.+.|
T Consensus 479 tLivGGeastlsiWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq---------~~VrqfqG 549 (705)
T KOG0639|consen 479 TLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ---------TLVRQFQG 549 (705)
T ss_pred eEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc---------eeeecccC
Confidence 566788899999999975432222111 12235667889999999999999999999999876 67799999
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|.+.+.||.++++|..|.||+-|.+|+.||+++++.+....- .+.|.++..+|++.++++|- +++.+.+...
T Consensus 550 htDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF---~SQIfSLg~cP~~dWlavGM-----ens~vevlh~ 621 (705)
T KOG0639|consen 550 HTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDF---SSQIFSLGYCPTGDWLAVGM-----ENSNVEVLHT 621 (705)
T ss_pred CCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhh---hhhheecccCCCccceeeec-----ccCcEEEEec
Confidence 999999999999999999999999999999999888777665 68899999999999999998 8889999888
Q ss_pred CCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 454 NAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 454 ~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
++.....+ .|++-|.++.|+ +.| +++++.+.|..+..|.+.-|..+.... ..++|.+...|.|.+++++|+.
T Consensus 622 skp~kyqlhlheScVLSlKFa--~cG---kwfvStGkDnlLnawrtPyGasiFqsk--E~SsVlsCDIS~ddkyIVTGSG 694 (705)
T KOG0639|consen 622 SKPEKYQLHLHESCVLSLKFA--YCG---KWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISFDDKYIVTGSG 694 (705)
T ss_pred CCccceeecccccEEEEEEec--ccC---ceeeecCchhhhhhccCccccceeecc--ccCcceeeeeccCceEEEecCC
Confidence 86655555 578899999999 889 899999999999999999898888776 4689999999999999999999
Q ss_pred CCcEEEEEc
Q psy10778 533 EGLVIIWES 541 (556)
Q Consensus 533 Dg~V~vwdl 541 (556)
|....||.+
T Consensus 695 dkkATVYeV 703 (705)
T KOG0639|consen 695 DKKATVYEV 703 (705)
T ss_pred CcceEEEEE
Confidence 999988876
|
|
| >KOG0647|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3e-18 Score=161.11 Aligned_cols=201 Identities=15% Similarity=0.173 Sum_probs=167.9
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
...+.|.+++||| ...++++||.||+||+|++.... . ...+....|.++|.+++|+.+|..+++|+.|+.++
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g---~----~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k 97 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSG---Q----LVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAK 97 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCC---c----ccchhhhccCCCeEEEEEccCCceEEeeccCCceE
Confidence 5678999999999 45667799999999999998631 1 11255678999999999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC--eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNG--EIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPE 477 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~--~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pd 477 (556)
+||+.++ .+.++.. | .++|..+.|-+... .|++|+ .|.+|+.||.+ ..++.++...+++.++..-
T Consensus 98 ~wDL~S~-Q~~~v~~-H-d~pvkt~~wv~~~~~~cl~TGS-----WDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~---- 165 (347)
T KOG0647|consen 98 LWDLASG-QVSQVAA-H-DAPVKTCHWVPGMNYQCLVTGS-----WDKTLKFWDTRSSNPVATLQLPERVYAADVL---- 165 (347)
T ss_pred EEEccCC-Ceeeeee-c-ccceeEEEEecCCCcceeEecc-----cccceeecccCCCCeeeeeeccceeeehhcc----
Confidence 9999998 4666667 8 99999999987665 889999 99999999998 7889999999999998765
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAH-LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
. .+++++..+..|.+|++..+.. .+.+.....-.+++++.-+|....+.|+-+|++.|-.+..+
T Consensus 166 ~---pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~ 230 (347)
T KOG0647|consen 166 Y---PMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDP 230 (347)
T ss_pred C---ceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCC
Confidence 2 5889999999999999976543 33333233456899999998888899999999999999875
|
|
| >KOG0268|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.6e-19 Score=173.24 Aligned_cols=201 Identities=14% Similarity=0.229 Sum_probs=165.1
Q ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
+|.++|.|++=+|.. ..+++|+.||.|++||+... .+..++.+|.+.|.+|++.. ..+++++.|.+|+
T Consensus 64 gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR---------~~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK 132 (433)
T KOG0268|consen 64 GHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQR---------ECIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVK 132 (433)
T ss_pred ccccccchhhcCcchhhhhhccccCceEEEEehhhh---------hhhheeecccCceeeEEecc--cceEEecCCccee
Confidence 899999999999976 67999999999999999876 67789999999999999986 5788888999888
Q ss_pred EEeCC--------------------------------------CCeEEEEeCCCCCCCCeeEEEEeCCCCeE-EEEeecC
Q psy10778 401 LWDIN--------------------------------------TIGYIREIPCVDPNTPVSHVTMSETNGEI-ASVLQTT 441 (556)
Q Consensus 401 iwdl~--------------------------------------~~~~v~~l~~~h~~~~V~~l~~sp~~~~i-~s~s~~~ 441 (556)
.|.+. ...+++++.- . ...|.++.++|....| ++++
T Consensus 133 ~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smsw-G-~Dti~svkfNpvETsILas~~--- 207 (433)
T KOG0268|consen 133 QWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSW-G-ADSISSVKFNPVETSILASCA--- 207 (433)
T ss_pred eeeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeec-C-CCceeEEecCCCcchheeeec---
Confidence 88632 1112222222 1 3457788888876544 4554
Q ss_pred cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEE
Q psy10778 442 KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVT 519 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~ 519 (556)
.|+.|.+||++ +.++..+.....-+.|+|+ |++ ..+++|++|..++.+|++..+ ++.... +|.+.|.+++
T Consensus 208 --sDrsIvLyD~R~~~Pl~KVi~~mRTN~Iswn--Pea---fnF~~a~ED~nlY~~DmR~l~~p~~v~~-dhvsAV~dVd 279 (433)
T KOG0268|consen 208 --SDRSIVLYDLRQASPLKKVILTMRTNTICWN--PEA---FNFVAANEDHNLYTYDMRNLSRPLNVHK-DHVSAVMDVD 279 (433)
T ss_pred --cCCceEEEecccCCccceeeeeccccceecC--ccc---cceeeccccccceehhhhhhcccchhhc-ccceeEEEec
Confidence 89999999998 7888877777888999999 787 789999999999999998766 444554 8999999999
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 520 YSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|||.|+-+++|+-|.+|+||.+..+..
T Consensus 280 fsptG~EfvsgsyDksIRIf~~~~~~S 306 (433)
T KOG0268|consen 280 FSPTGQEFVSGSYDKSIRIFPVNHGHS 306 (433)
T ss_pred cCCCcchhccccccceEEEeecCCCcc
Confidence 999999999999999999999987543
|
|
| >KOG0973|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=2e-18 Score=186.40 Aligned_cols=209 Identities=16% Similarity=0.229 Sum_probs=171.4
Q ss_pred CCCceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccc--c-ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC
Q psy10778 323 LGATIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKI--E-FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~--~-~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg 397 (556)
+...|-+++.+|+|..++||+ .||.++||+.+.--..... . ..+.+.+...|.+.|+|+.|++||++||+||+|+
T Consensus 12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~ 91 (942)
T KOG0973|consen 12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR 91 (942)
T ss_pred CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence 445788999999999999999 9999999997643211111 1 1356788899999999999999999999999999
Q ss_pred cEEEEeCCC------------------CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEE
Q psy10778 398 TCLLWDINT------------------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLI 458 (556)
Q Consensus 398 ~I~iwdl~~------------------~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i 458 (556)
.|.||.... .+.+..+.+ | .+.|..++|+|++.++++++ -|++|.+|+.. .+.+
T Consensus 92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~-H-~~DV~Dv~Wsp~~~~lvS~s-----~DnsViiwn~~tF~~~ 164 (942)
T KOG0973|consen 92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRG-H-DSDVLDVNWSPDDSLLVSVS-----LDNSVIIWNAKTFELL 164 (942)
T ss_pred eEEEeeecccCCcccccccccccccceeeEEEEEec-C-CCccceeccCCCccEEEEec-----ccceEEEEccccceee
Confidence 999998762 135678888 9 99999999999999999999 89999999997 6666
Q ss_pred EEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------------------------------------
Q psy10778 459 TSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK------------------------------------- 500 (556)
Q Consensus 459 ~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~------------------------------------- 500 (556)
..+ .|.+.|..+.|. |-| +++++-+.|++|++|++.+
T Consensus 165 ~vl~~H~s~VKGvs~D--P~G---ky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA 239 (942)
T KOG0973|consen 165 KVLRGHQSLVKGVSWD--PIG---KYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNA 239 (942)
T ss_pred eeeecccccccceEEC--Ccc---CeeeeecCCceEEEEEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhh
Confidence 666 588999999999 899 9999999999999998611
Q ss_pred ---------------CeEEEEecCCCCCCeEEEEEecC-----CC------------EEEEEcCCCcEEEEEcCCC
Q psy10778 501 ---------------LAHLLTLNTNVALPVIAVTYSCD-----SQ------------HLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 501 ---------------~~~~~~~~~~h~~~V~~l~~s~d-----g~------------~l~sgs~Dg~V~vwdl~~~ 544 (556)
.+.-..+. ||.++++++.|+|. .. .+|+|+.|++|.||.....
T Consensus 240 ~n~~~~~~~IieR~tWk~~~~Lv-GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~ 314 (942)
T KOG0973|consen 240 VNGGKSTIAIIERGTWKVDKDLV-GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALP 314 (942)
T ss_pred ccCCcceeEEEecCCceeeeeee-cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCC
Confidence 11222333 78999999999981 11 6889999999999998543
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.81 E-value=3.1e-18 Score=161.72 Aligned_cols=196 Identities=15% Similarity=0.215 Sum_probs=159.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 327 IATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
..|+.|++.|.+||+|..||.|.|||+.+. ...+.+.+|..+|++++||++|+.|+|+|.|..|++||+..
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~---------~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~ 96 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTF---------RIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLK 96 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEcccc---------chhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccC
Confidence 789999999999999999999999999986 45578899999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee--c----CCCeEEEEEeeCCCCCc
Q psy10778 407 IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA--S----ELRITSVTFSNAPEGVS 480 (556)
Q Consensus 407 ~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~--~----~~~i~~i~~s~~pdg~~ 480 (556)
|.+++.+.- .++|....|+|.....+.++. .+..-.+.++.......+. . .....+..|. +.|
T Consensus 97 gs~l~rirf---~spv~~~q~hp~k~n~~va~~----~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fd--r~g-- 165 (405)
T KOG1273|consen 97 GSPLKRIRF---DSPVWGAQWHPRKRNKCVATI----MEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFD--RRG-- 165 (405)
T ss_pred CCceeEEEc---cCccceeeeccccCCeEEEEE----ecCCcEEEEecCCceeeccCCCcccccccccccccc--CCC--
Confidence 999999987 799999999997655444442 2333444444321111111 1 1122333466 778
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+++++|...|.+.++|..+.+++..+.......|..+.++..|+.++.-+.|+.|+.|+++.
T Consensus 166 -~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 166 -KYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred -CEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 89999999999999999999999888743347899999999999999999999999999874
|
|
| >KOG1539|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=3.8e-18 Score=179.01 Aligned_cols=225 Identities=17% Similarity=0.255 Sum_probs=194.8
Q ss_pred eEEeccCCCeEEEEeCCCCCC-cceEcCC----CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPA-TPVIRPP----LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-~~~~~~~----h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
++++--.+..++.|+..+... ...+... ....+++++.++-|++.+.|+..|+|-+|+++.+ ....
T Consensus 414 v~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSG---------i~r~ 484 (910)
T KOG1539|consen 414 VITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSG---------IHRK 484 (910)
T ss_pred eeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccC---------eeec
Confidence 777777888999999886543 2222211 2368999999999999999999999999999987 3334
Q ss_pred Ee---eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 370 IL---LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 370 ~l---~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
.+ ..|..+|++++...-++.++|++.+|.++.||......+..+.. ...+.++..+.....+++++ .+-
T Consensus 485 sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~~~l~l---~~~~~~iv~hr~s~l~a~~~-----ddf 556 (910)
T KOG1539|consen 485 SFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLKKSLRL---GSSITGIVYHRVSDLLAIAL-----DDF 556 (910)
T ss_pred ccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcceeeeecc---CCCcceeeeeehhhhhhhhc-----Cce
Confidence 44 58999999999999999999999999999999999888888887 78899999999999999998 889
Q ss_pred eEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 447 ILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
.|+++|+. .+.++.+. |...|++++|| ||| ++|++++.|++|++||+.++.++..+. -+.+++++.|||+|
T Consensus 557 ~I~vvD~~t~kvvR~f~gh~nritd~~FS--~Dg---rWlisasmD~tIr~wDlpt~~lID~~~--vd~~~~sls~SPng 629 (910)
T KOG1539|consen 557 SIRVVDVVTRKVVREFWGHGNRITDMTFS--PDG---RWLISASMDSTIRTWDLPTGTLIDGLL--VDSPCTSLSFSPNG 629 (910)
T ss_pred eEEEEEchhhhhhHHhhccccceeeeEeC--CCC---cEEEEeecCCcEEEEeccCcceeeeEe--cCCcceeeEECCCC
Confidence 99999997 56666664 88999999999 999 999999999999999999999999886 47899999999999
Q ss_pred CEEEEEcCC-CcEEEEEcCC
Q psy10778 525 QHLYASNTE-GLVIIWESSS 543 (556)
Q Consensus 525 ~~l~sgs~D-g~V~vwdl~~ 543 (556)
.+|++...| .-|++|.-++
T Consensus 630 D~LAT~Hvd~~gIylWsNks 649 (910)
T KOG1539|consen 630 DFLATVHVDQNGIYLWSNKS 649 (910)
T ss_pred CEEEEEEecCceEEEEEchh
Confidence 999999998 6799998655
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.5e-17 Score=157.22 Aligned_cols=232 Identities=14% Similarity=0.166 Sum_probs=168.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCc---ceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCC---
Q psy10778 295 MICWNECDNLIRLKMSKELPAT---PVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKP--- 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~---~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~--- 367 (556)
+|++.+.|++||+|+++.-... .....-..+.-+.++|.||.+-+++.. ...++++|.+......+-.....+
T Consensus 100 ~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~ 179 (420)
T KOG2096|consen 100 KLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDN 179 (420)
T ss_pred eeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEEeeecccCCCCcccccccc
Confidence 8899999999999998752111 111111223568899999987666554 456799998876532211111111
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
...-..|.-.|..+-....+.+|+|++.|..|.+|+++ |+.+.++.. . ...-...++||+|+.|++++ -...
T Consensus 180 ~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idt-n-q~~n~~aavSP~GRFia~~g-----FTpD 251 (420)
T KOG2096|consen 180 LEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDT-N-QSSNYDAAVSPDGRFIAVSG-----FTPD 251 (420)
T ss_pred cccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-Cceeeeecc-c-cccccceeeCCCCcEEEEec-----CCCC
Confidence 12234566777778888888899999999999999999 899998887 5 66778889999999999998 7888
Q ss_pred EEEEEeC----Cc---E---EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC-------------------
Q psy10778 448 LRLHTIN----AQ---L---ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG------------------- 498 (556)
Q Consensus 448 I~iwdi~----g~---~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~------------------- 498 (556)
|++|.+- |. . .....|.+.|..++|+ ++. ..+++.+.||++++||.
T Consensus 252 VkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFs--n~S---~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~p 326 (420)
T KOG2096|consen 252 VKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFS--NSS---TRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAP 326 (420)
T ss_pred ceEEEEEeccCcchhhhhhhheeccchhheeeeeeC--CCc---ceeEEEecCCcEEEeeccceEecCCCchHhhcCCcc
Confidence 9999872 32 1 1222478899999999 777 78999999999999997
Q ss_pred ---------------------------------CCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 499 ---------------------------------YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 499 ---------------------------------~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
++++....+...|...|++++|+++|+++++++ |..+++..
T Consensus 327 l~aag~~p~RL~lsP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 327 LHAAGSEPVRLELSPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred hhhcCCCceEEEeCCCCcEEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 111112222224678899999999999999887 66777765
|
|
| >KOG1408|consensus | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-18 Score=175.53 Aligned_cols=247 Identities=14% Similarity=0.114 Sum_probs=188.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce--EcCCCCCceEEEEEcCC-----------CCEEEEEeCCCcEEEEEeeeccCccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV--IRPPLGATIATATTAPD-----------CHTLWLGLTSGNILVYEYELNASTNK 361 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~--~~~~h~~~V~~i~~s~d-----------g~~l~tgs~Dg~I~vwd~~~~~~~~~ 361 (556)
-|++-+.|.++++||+..-..... ....|...|..+..-|- ..-++|++.|++|++|++........
T Consensus 338 klscVYndhSlYvWDvrD~~kvgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~v 417 (1080)
T KOG1408|consen 338 KLSCVYNDHSLYVWDVRDVNKVGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQV 417 (1080)
T ss_pred eEEEEEcCceEEEEeccccccccceeeeeeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccce
Confidence 677788999999999975432211 11258888887765441 13588999999999999986321110
Q ss_pred ----cccc------------------------CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe
Q psy10778 362 ----IEFC------------------------KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI 413 (556)
Q Consensus 362 ----~~~~------------------------~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l 413 (556)
.... +......+..-.+.+++++|+|+.|++|..-|+++|||+...++...+
T Consensus 418 yrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~ 497 (1080)
T KOG1408|consen 418 YRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFM 497 (1080)
T ss_pred eecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhhe
Confidence 0000 111223344567999999999999999999999999999999999999
Q ss_pred CCCCCCCCeeEEEEeCC---CCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEee-------------
Q psy10778 414 PCVDPNTPVSHVTMSET---NGEIASVLQTTKTGGSILRLHTIN--AQLITSL-ASELRITSVTFSN------------- 474 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~---~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~------------- 474 (556)
+. | .+.|.|+.++.. .+.+|+++ +|..|++||+. -.+++++ .|.+.|+++.|.-
T Consensus 498 eA-H-esEilcLeyS~p~~~~kLLASas-----rdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGAD 570 (1080)
T KOG1408|consen 498 EA-H-ESEILCLEYSFPVLTNKLLASAS-----RDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGAD 570 (1080)
T ss_pred ec-c-cceeEEEeecCchhhhHhhhhcc-----CCceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCc
Confidence 99 9 999999999853 46788888 89999999984 3344444 2344555554421
Q ss_pred ----------------------------------CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEE
Q psy10778 475 ----------------------------------APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAV 518 (556)
Q Consensus 475 ----------------------------------~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l 518 (556)
.|.. +++++++.|..|+|||+.+++..+.|.. +|++....+
T Consensus 571 ksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~---k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv 647 (1080)
T KOG1408|consen 571 KSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTS---KLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKV 647 (1080)
T ss_pred hhhheehhccccCceeccccccccccceEEEeeeCCCc---ceEEEEecccceEEEeccccceeeeecccccCCCceEEE
Confidence 0444 7899999999999999999999999986 567888899
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 519 TYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 519 ~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
...|.|-+|++.+.|.++.++|..+++++....
T Consensus 648 ~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 648 ILDPSGIYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred EECCCccEEEEeecCCceEEEEeccchhhhhhc
Confidence 999999999999999999999999988876543
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=1.4e-17 Score=164.56 Aligned_cols=228 Identities=17% Similarity=0.219 Sum_probs=180.2
Q ss_pred ceEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+++.+++-||++++|.+... +.++.+. -...+|.+++|.|+|. .+++++....++.||+.+.. . ..+..
T Consensus 226 plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak----~---~k~~~ 297 (514)
T KOG2055|consen 226 PLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAK----V---TKLKP 297 (514)
T ss_pred ceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeecCCCceEEEecccceEEEEeeccccc----c---ccccC
Confidence 38888999999999988643 3333332 2357899999999999 89999999999999998752 1 23344
Q ss_pred eeCCC-ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 LLGHS-ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+.++. ..+....+++++++|+..+..|.|.+....+++.+.+++. .+.|..++|+.+++.|++++ .+|.|.
T Consensus 298 ~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~Ki---eG~v~~~~fsSdsk~l~~~~-----~~GeV~ 369 (514)
T KOG2055|consen 298 PYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKI---EGVVSDFTFSSDSKELLASG-----GTGEVY 369 (514)
T ss_pred CCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeee---ccEEeeEEEecCCcEEEEEc-----CCceEE
Confidence 45554 3466788899999999999999999999999999999988 79999999999999999888 899999
Q ss_pred EEEeC-CcEEEEeecCCCe--EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC--------------------------
Q psy10778 450 LHTIN-AQLITSLASELRI--TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------------------------- 500 (556)
Q Consensus 450 iwdi~-g~~i~~~~~~~~i--~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------------------------- 500 (556)
+||++ ..++..+..++.| +++|.+ ++| .+||+|+..|.|.|||..+
T Consensus 370 v~nl~~~~~~~rf~D~G~v~gts~~~S--~ng---~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn 444 (514)
T KOG2055|consen 370 VWNLRQNSCLHRFVDDGSVHGTSLCIS--LNG---SYLATGSDSGIVNIYDGNSCFASTNPKPIKTVDNLTTAITSLQFN 444 (514)
T ss_pred EEecCCcceEEEEeecCccceeeeeec--CCC---ceEEeccCcceEEEeccchhhccCCCCchhhhhhhheeeeeeeeC
Confidence 99998 5666777666655 455555 888 8999999999999999511
Q ss_pred ----------------CeEEE--------EecC--CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 501 ----------------LAHLL--------TLNT--NVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 501 ----------------~~~~~--------~~~~--~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.++++ .+.. ..-+.|+|++|||.+.+|+.|.++|+|.+|.+.
T Consensus 445 ~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 445 HDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred cchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCCceeeEeec
Confidence 01111 0100 113568999999999999999999999999875
|
|
| >KOG1274|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=2.5e-17 Score=174.72 Aligned_cols=220 Identities=15% Similarity=0.168 Sum_probs=178.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.++.|+.+++|.+|...++..-..+. ...-++++++++.+|+++|.||.|-.|++-+.... .....+.+|
T Consensus 68 ~f~~~s~~~tv~~y~fps~~~~~iL~-Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~---------s~~~~lrgh 137 (933)
T KOG1274|consen 68 HFLTGSEQNTVLRYKFPSGEEDTILA-RFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS---------SQEKVLRGH 137 (933)
T ss_pred ceEEeeccceEEEeeCCCCCccceee-eeeccceEEEEecCCcEEEeecCceeEEEEecccc---------chheeeccc
Confidence 78999999999999988765543332 34568999999999999999999999999998876 556889999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCC------CCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD------PNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h------~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
+++|.++.++|.+.+||+.+.||.|++||+.++....++.+.. ....+..++|+|+++.+++.+ .++.|
T Consensus 138 ~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~-----~d~~V 212 (933)
T KOG1274|consen 138 DAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPP-----VDNTV 212 (933)
T ss_pred CCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeec-----cCCeE
Confidence 9999999999999999999999999999999988776665410 024567899999999998888 89999
Q ss_pred EEEEeCC-cEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 449 RLHTINA-QLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 449 ~iwdi~g-~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
++|+.++ .....+. +...+.+++|+ |.| .+||+++.||.|.|||..+-.. + .....|++++|.|++
T Consensus 213 kvy~r~~we~~f~Lr~~~~ss~~~~~~ws--PnG---~YiAAs~~~g~I~vWnv~t~~~-~----~~~~~Vc~~aw~p~~ 282 (933)
T KOG1274|consen 213 KVYSRKGWELQFKLRDKLSSSKFSDLQWS--PNG---KYIAASTLDGQILVWNVDTHER-H----EFKRAVCCEAWKPNA 282 (933)
T ss_pred EEEccCCceeheeecccccccceEEEEEc--CCC---cEEeeeccCCcEEEEecccchh-c----cccceeEEEecCCCC
Confidence 9999984 4444442 34559999999 889 8999999999999999977221 1 235789999999998
Q ss_pred CEEEEEcCCCcEEEE
Q psy10778 525 QHLYASNTEGLVIIW 539 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vw 539 (556)
..+-.-...|..-+|
T Consensus 283 n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 283 NAITLITALGTLGVS 297 (933)
T ss_pred CeeEEEeeccccccC
Confidence 776655555554444
|
|
| >KOG2096|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.3e-18 Score=159.38 Aligned_cols=205 Identities=13% Similarity=0.149 Sum_probs=156.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCE-EEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSV-AVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~I~ 400 (556)
+|.+.|++++|+.||+.|||++.|++|++|+++.-... +.++++.-. .-+--+.+.|+||-+- +++.-...+++
T Consensus 84 gH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~----eHr~~R~nv-e~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 84 GHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENK----EHRCIRQNV-EYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred ccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhh----hhhHhhccc-cCCCceEEEECCCcceEEEEEccCCEEE
Confidence 89999999999999999999999999999998753111 112222111 1124577899998874 45555666899
Q ss_pred EEeCCCC---eEEE--------EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-CCCeE
Q psy10778 401 LWDINTI---GYIR--------EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRIT 468 (556)
Q Consensus 401 iwdl~~~---~~v~--------~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-~~~i~ 468 (556)
+|.+... .... .+...| ...+..+-+...+.+|++++ .|..|.+|++.|+.+.++.. ....+
T Consensus 159 vyk~~K~~dG~~~~~~v~~D~~~f~~kh-~v~~i~iGiA~~~k~imsas-----~dt~i~lw~lkGq~L~~idtnq~~n~ 232 (420)
T KOG2096|consen 159 VYKLVKKTDGSGSHHFVHIDNLEFERKH-QVDIINIGIAGNAKYIMSAS-----LDTKICLWDLKGQLLQSIDTNQSSNY 232 (420)
T ss_pred EEEeeecccCCCCcccccccccccchhc-ccceEEEeecCCceEEEEec-----CCCcEEEEecCCceeeeecccccccc
Confidence 9976532 1111 111114 56677777788889999999 89999999999999999864 45667
Q ss_pred EEEEeeCCCCCcceEEEEEeCCCeEEEEeCC---CC-----eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY---KL-----AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~---~~-----~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
..+.| |+| +++++++-.-.|++|..- .| +.+..+. +|.+.|..++|+++.+.+++.+.||+++|||
T Consensus 233 ~aavS--P~G---RFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk-GH~saV~~~aFsn~S~r~vtvSkDG~wriwd 306 (420)
T KOG2096|consen 233 DAAVS--PDG---RFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK-GHQSAVLAAAFSNSSTRAVTVSKDGKWRIWD 306 (420)
T ss_pred ceeeC--CCC---cEEEEecCCCCceEEEEEeccCcchhhhhhhheec-cchhheeeeeeCCCcceeEEEecCCcEEEee
Confidence 78889 999 999999988999999862 22 2334555 8999999999999999999999999999999
Q ss_pred cCC
Q psy10778 541 SSS 543 (556)
Q Consensus 541 l~~ 543 (556)
..-
T Consensus 307 tdV 309 (420)
T KOG2096|consen 307 TDV 309 (420)
T ss_pred ccc
Confidence 864
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=4.1e-17 Score=168.02 Aligned_cols=228 Identities=15% Similarity=0.185 Sum_probs=190.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcc-eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATP-VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~-~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.||.|-.||.|.+|++..+-... .+..+.+..|-+++|++ +..|++.+.+|.|.-||+.+. ++...+..
T Consensus 39 ~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~l---------k~~~~~d~ 108 (691)
T KOG2048|consen 39 QLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTL---------KQKYNIDS 108 (691)
T ss_pred ceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccC---------ceeEEecC
Confidence 68889999999999998765443 34434567899999995 567888888999999999887 66677888
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
..+.|++++.+|.+..++.|++||.+...+...++.. +.+.. . .+.|.+++|++++..|+.|+ .||.|++|
T Consensus 109 ~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~r-q-~sRvLslsw~~~~~~i~~Gs-----~Dg~Iriw 181 (691)
T KOG2048|consen 109 NGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMR-Q-KSRVLSLSWNPTGTKIAGGS-----IDGVIRIW 181 (691)
T ss_pred CCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeeccc-c-cceEEEEEecCCccEEEecc-----cCceEEEE
Confidence 8899999999999999999999998888888776543 44555 4 68999999999999999999 89999999
Q ss_pred EeC-CcEEEEe--e---c----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 452 TIN-AQLITSL--A---S----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 452 di~-g~~i~~~--~---~----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
|.. +..+... + . ..-|.++.+- .++ .|++|.+.|+|.+||...+.++..+. .|.+.|.+++.+
T Consensus 182 d~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L--rd~----tI~sgDS~G~V~FWd~~~gTLiqS~~-~h~adVl~Lav~ 254 (691)
T KOG2048|consen 182 DVKSGQTLHIITMQLDRLSKREPTIVWSVLFL--RDS----TIASGDSAGTVTFWDSIFGTLIQSHS-CHDADVLALAVA 254 (691)
T ss_pred EcCCCceEEEeeecccccccCCceEEEEEEEe--ecC----cEEEecCCceEEEEcccCcchhhhhh-hhhcceeEEEEc
Confidence 997 5544421 1 1 2246777777 564 89999999999999999999999998 799999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+++..+.+++.|+.|.-+...+.+.
T Consensus 255 ~~~d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 255 DNEDRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CCCCeEEEccCCCceEEEEecCCcc
Confidence 9999999999999999998877543
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5e-18 Score=165.41 Aligned_cols=242 Identities=17% Similarity=0.160 Sum_probs=174.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcc---e-----EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccC----c---
Q psy10778 295 MICWNECDNLIRLKMSKELPATP---V-----IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAS----T--- 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~---~-----~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~----~--- 359 (556)
.+++|+.|..|++|.+....... . ....|...|+++.|+|+|..||+|+.+|.|.+|....... .
T Consensus 28 ~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~ 107 (434)
T KOG1009|consen 28 KLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEAD 107 (434)
T ss_pred ceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhh
Confidence 78999999999999876432211 1 1126999999999999999999999999999998762110 0
Q ss_pred ccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 360 NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 360 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
.........+.+.+|...|..++|++++..+++|+-|.++++||+..|+.+..+.. | ...+..++|.|-++++++-+
T Consensus 108 ~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~d-h-~~yvqgvawDpl~qyv~s~s- 184 (434)
T KOG1009|consen 108 LNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDD-H-EHYVQGVAWDPLNQYVASKS- 184 (434)
T ss_pred hCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeeccc-c-ccccceeecchhhhhhhhhc-
Confidence 00111233467889999999999999999999999999999999999999999999 9 99999999999999998887
Q ss_pred cCcCCCCeEEEEEeC-CcE---EE-----------------Eeec----CCCeEEEEEeeCCCCC---------------
Q psy10778 440 TTKTGGSILRLHTIN-AQL---IT-----------------SLAS----ELRITSVTFSNAPEGV--------------- 479 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~-g~~---i~-----------------~~~~----~~~i~~i~~s~~pdg~--------------- 479 (556)
.|...+.++++ .+. +. .+-| ......++|+ |+|.
T Consensus 185 ----~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfT--PdG~llvtPag~~~~g~~~ 258 (434)
T KOG1009|consen 185 ----SDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFT--PDGSLLVTPAGLFKVGGGV 258 (434)
T ss_pred ----cCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccC--CCCcEEEcccceeeeCCce
Confidence 44444444432 000 00 0000 0111222333 2320
Q ss_pred ---------------------------------------------------cc-eEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 480 ---------------------------------------------------SQ-NVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 480 ---------------------------------------------------~~-~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
.. -+++.++ ...|++||..+..++...
T Consensus 259 ~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v 337 (434)
T KOG1009|consen 259 FRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVV 337 (434)
T ss_pred eeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEE
Confidence 00 1223333 346778887777777777
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
..-|-.+|+.++|++||..|+..+.||-..+..++..+.
T Consensus 338 ~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 338 DNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred eeeeeeeecceeecCCCcEEEEeccCCceEEEEEcchhc
Confidence 767889999999999999999999999888877766443
|
|
| >KOG0270|consensus | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.6e-18 Score=166.74 Aligned_cols=204 Identities=17% Similarity=0.187 Sum_probs=164.9
Q ss_pred EEEEEcC-------CCCEEEEEeCCCcEEEEEeeeccCcc----------ccc--ccCCCeEeeCCCccEEEEEEccCC-
Q psy10778 328 ATATTAP-------DCHTLWLGLTSGNILVYEYELNASTN----------KIE--FCKPPTILLGHSACVTDLYLCAGF- 387 (556)
Q Consensus 328 ~~i~~s~-------dg~~l~tgs~Dg~I~vwd~~~~~~~~----------~~~--~~~~~~~l~~h~~~V~~l~~s~~~- 387 (556)
.|++|.. .|+++|.|+.|..|.|||++.....- +.. ..+.-....+|++.|..++|+...
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 5666643 36899999999999999987542110 000 001112234799999999998865
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeC--CcEEEEeecC
Q psy10778 388 SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTIN--AQLITSLASE 464 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~~~ 464 (556)
+.|+|||.|.+|++||+.++++.+++.. | ...|.+++|+|.. ..+++|+ .|++|.+.|.+ +..-...+..
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~s~~~-~-~k~Vq~l~wh~~~p~~LLsGs-----~D~~V~l~D~R~~~~s~~~wk~~ 329 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKSSITH-H-GKKVQTLEWHPYEPSVLLSGS-----YDGTVALKDCRDPSNSGKEWKFD 329 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcceehhh-c-CCceeEEEecCCCceEEEecc-----ccceEEeeeccCccccCceEEec
Confidence 4899999999999999999999999998 8 9999999999964 5677777 89999999998 3444455678
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcC
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESS 542 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~ 542 (556)
+.|-.++|. +... ..+++++.||+|+-+|+|+. +++.++. .|..+|.+++++..- .++++++.|+.|.+|++.
T Consensus 330 g~VEkv~w~--~~se--~~f~~~tddG~v~~~D~R~~~~~vwt~~-AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~ 404 (463)
T KOG0270|consen 330 GEVEKVAWD--PHSE--NSFFVSTDDGTVYYFDIRNPGKPVWTLK-AHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFD 404 (463)
T ss_pred cceEEEEec--CCCc--eeEEEecCCceEEeeecCCCCCceeEEE-eccCCcceEEecCCCCcceeeccccceEEEEeec
Confidence 899999999 4432 68899999999999999875 8999998 899999999998754 678899999999999997
Q ss_pred C
Q psy10778 543 S 543 (556)
Q Consensus 543 ~ 543 (556)
.
T Consensus 405 ~ 405 (463)
T KOG0270|consen 405 V 405 (463)
T ss_pred C
Confidence 6
|
|
| >KOG4283|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.6e-17 Score=155.62 Aligned_cols=187 Identities=12% Similarity=0.102 Sum_probs=145.5
Q ss_pred ceEEeccCCCeEEEEeCCCCC----------Ccce----EcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccC
Q psy10778 294 GMICWNECDNLIRLKMSKELP----------ATPV----IRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNAS 358 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~----------~~~~----~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~ 358 (556)
.|+.+|+.||+|.+||++... .+.. -..+|.-.|..+.|.| |...+.+++.|.+++|||..+.+
T Consensus 57 rymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ- 135 (397)
T KOG4283|consen 57 RYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQ- 135 (397)
T ss_pred eEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccceEEEeecccce-
Confidence 399999999999999997532 1111 1225777999999998 55678888999999999998751
Q ss_pred cccccccCCCeEeeCCCccEEEEEEccCC---CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 359 TNKIEFCKPPTILLGHSACVTDLYLCAGF---SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
. ..-..-.+.|..-+++|-. -++++|..|-.|++.|+.+|.+..++.+ | ...|.++.|+|...+++
T Consensus 136 --------~-a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsG-H-r~~vlaV~Wsp~~e~vL 204 (397)
T KOG4283|consen 136 --------E-AVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSG-H-RDGVLAVEWSPSSEWVL 204 (397)
T ss_pred --------e-eEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeecc-c-cCceEEEEeccCceeEE
Confidence 1 1222345667777777732 3788899999999999999999999999 9 99999999999988765
Q ss_pred EEeecCcCCCCeEEEEEeC--CcEEEEe---------------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 436 SVLQTTKTGGSILRLHTIN--AQLITSL---------------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~--g~~i~~~---------------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
+.++ .||.|++||++ ..+...+ .|.+.+.+++|+ .+| .++++.+.|..+++|+.
T Consensus 205 atgs----aDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~t--Sd~---~~l~~~gtd~r~r~wn~ 275 (397)
T KOG4283|consen 205 ATGS----ADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWT--SDA---RYLASCGTDDRIRVWNM 275 (397)
T ss_pred EecC----CCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeec--ccc---hhhhhccCccceEEeec
Confidence 4443 89999999996 2222222 245789999999 889 89999999999999988
Q ss_pred CCC
Q psy10778 499 YKL 501 (556)
Q Consensus 499 ~~~ 501 (556)
.+|
T Consensus 276 ~~G 278 (397)
T KOG4283|consen 276 ESG 278 (397)
T ss_pred ccC
Confidence 544
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-16 Score=159.06 Aligned_cols=231 Identities=13% Similarity=0.153 Sum_probs=185.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI------------ 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~------------ 362 (556)
-+.+|-++|.|.+|+..+.+...... .|.+.|-+++...+|.+|- |+.|..|..||-.........
T Consensus 259 dviTgDS~G~i~Iw~~~~~~~~k~~~-aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~ 336 (626)
T KOG2106|consen 259 DVITGDSGGNILIWSKGTNRISKQVH-AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVA 336 (626)
T ss_pred CEEeecCCceEEEEeCCCceEEeEee-ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEe
Confidence 78899999999999998877777776 8999999999999986555 999999999994332111000
Q ss_pred -------------------cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCee
Q psy10778 363 -------------------EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVS 423 (556)
Q Consensus 363 -------------------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~ 423 (556)
.+........+|.+....++.+|+...+++++.|+.+++|+ ..+.+.+... ..++.
T Consensus 337 e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~---~d~~~ 411 (626)
T KOG2106|consen 337 EGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII---EDPAE 411 (626)
T ss_pred cCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe---cCcee
Confidence 00022244567889999999999999999999999999999 4455555444 57899
Q ss_pred EEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-C
Q psy10778 424 HVTMSETNGEIASVLQTTKTGGSILRLHTINA-QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-L 501 (556)
Q Consensus 424 ~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~ 501 (556)
++.|+|.| .+|.|. ..|...+.|... .++......+++++++|+ |+| .+||+|+.|+.|++|.+.. +
T Consensus 412 ~~~fhpsg-~va~Gt-----~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ys--p~G---~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 412 CADFHPSG-VVAVGT-----ATGRWFVLDTETQDLVTIHTDNEQLSVVRYS--PDG---AFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred EeeccCcc-eEEEee-----ccceEEEEecccceeEEEEecCCceEEEEEc--CCC---CEEEEecCCCeEEEEEECCCC
Confidence 99999998 899998 889999999974 455544568999999999 999 8999999999999998854 4
Q ss_pred eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 502 AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.........+.++|+.+.||+|++++.+-+-|-.|..|....
T Consensus 481 ~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~ 522 (626)
T KOG2106|consen 481 RKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWKPSE 522 (626)
T ss_pred cEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEcccc
Confidence 444444434458999999999999999999999999994433
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.7e-17 Score=157.64 Aligned_cols=228 Identities=15% Similarity=0.159 Sum_probs=175.7
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeE-
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI- 370 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~- 370 (556)
.+++|.|+.-|.||+.|..+++....+. +|...|+.+.+.|+. +++++||.|..|++|++++. .++..
T Consensus 105 ~p~la~~G~~GvIrVid~~~~~~~~~~~-ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~---------~Cv~Vf 174 (385)
T KOG1034|consen 105 NPFLAAGGYLGVIRVIDVVSGQCSKNYR-GHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD---------VCVAVF 174 (385)
T ss_pred CeeEEeecceeEEEEEecchhhhcccee-ccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC---------eEEEEe
Confidence 4599999999999999999998888776 899999999999974 68999999999999999976 44454
Q ss_pred --eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE----------------------------EeCCCCCCC
Q psy10778 371 --LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR----------------------------EIPCVDPNT 420 (556)
Q Consensus 371 --l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~----------------------------~l~~~h~~~ 420 (556)
+.||.+.|.++.|+++|.+|+|++.|.++++|++...+... +-.. | ..
T Consensus 175 GG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~di-H-rn 252 (385)
T KOG1034|consen 175 GGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDI-H-RN 252 (385)
T ss_pred cccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccccccccc-c-cc
Confidence 46899999999999999999999999999999998421110 0011 3 34
Q ss_pred CeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe-C-Cc-------------EEEEeec-CCCeEEEEEeeCCCCCcceEE
Q psy10778 421 PVSHVTMSETNGEIASVLQTTKTGGSILRLHTI-N-AQ-------------LITSLAS-ELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 421 ~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi-~-g~-------------~i~~~~~-~~~i~~i~~s~~pdg~~~~~l 484 (556)
.|.|+.|- |.++++-+ .++.|..|-. . ++ .+.++.. ...|.-+.|+-++-+ +.|
T Consensus 253 yVDCvrw~--gd~ilSks-----cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~---~~l 322 (385)
T KOG1034|consen 253 YVDCVRWF--GDFILSKS-----CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQ---KML 322 (385)
T ss_pred hHHHHHHH--hhheeecc-----cCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHH---HHH
Confidence 45555554 56777777 7889999976 2 22 1222222 235666666644666 899
Q ss_pred EEEeCCCeEEEEeCCCCeEE--EEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 485 VTGHSDGTIQLWSGYKLAHL--LTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~~~~~--~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
|.|...|.|.+||+....+. .++.. .....|+..+||.||.+|+..++||.|.-||.-
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 99999999999999876552 22221 235789999999999999999999999999864
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=1.2e-17 Score=165.87 Aligned_cols=240 Identities=18% Similarity=0.187 Sum_probs=187.3
Q ss_pred ccccCCcce--EEeccCCCeEEEEeCCCC-CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc
Q psy10778 287 NVIGAGAGM--ICWNECDNLIRLKMSKEL-PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE 363 (556)
Q Consensus 287 ~~~~~~~~~--l~~gs~Dg~I~lw~~~~~-~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~ 363 (556)
++.|+.+.. ++.-+.|..+++|..... ..++.......+.-.|++......++++|+..++|+|||++..
T Consensus 39 s~~w~~~n~lvvas~~gdk~~~~~~K~g~~~~Vp~~~k~~gd~~~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~k------- 111 (673)
T KOG4378|consen 39 SFNWQRRNFLVVASMAGDKVMRIKEKDGKTPEVPRVRKLTGDNAFCVACASQSLYEISGGQSGCVKIWDLRAK------- 111 (673)
T ss_pred eeeccccceEEEeecCCceeEEEecccCCCCccceeeccccchHHHHhhhhcceeeeccCcCceeeehhhHHH-------
Confidence 344544443 444567888999965432 2233333333345566666666789999999999999999854
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
...+.+.+|.+.|+++.++-...+|++++..|.|+|..+.++.....+.. .....|+.+.+++..+.++....
T Consensus 112 --l~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~-~sgqsvRll~ys~skr~lL~~as---- 184 (673)
T KOG4378|consen 112 --LIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTI-DSGQSVRLLRYSPSKRFLLSIAS---- 184 (673)
T ss_pred --HHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceec-CCCCeEEEeecccccceeeEeec----
Confidence 45578899999999999999899999999999999999999877766665 21355779999998776654432
Q ss_pred CCCeEEEEEeCCc-EEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 444 GGSILRLHTINAQ-LITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 444 ~d~~I~iwdi~g~-~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
.+|.|.+||++|. ++... .|..+...|||+|..+ .+|++.+.|.+|.+||.+..+....+. ...+.+.++|
T Consensus 185 d~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne----~l~vsVG~Dkki~~yD~~s~~s~~~l~--y~~Plstvaf 258 (673)
T KOG4378|consen 185 DKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNE----ALLVSVGYDKKINIYDIRSQASTDRLT--YSHPLSTVAF 258 (673)
T ss_pred cCCeEEEEeccCCCcccchhhhccCCcCcceecCCcc----ceEEEecccceEEEeecccccccceee--ecCCcceeee
Confidence 8999999999964 44443 4788999999995333 689999999999999999888888886 4678999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+++|.+|++|+..|.|+.||++..+.
T Consensus 259 ~~~G~~L~aG~s~G~~i~YD~R~~k~ 284 (673)
T KOG4378|consen 259 SECGTYLCAGNSKGELIAYDMRSTKA 284 (673)
T ss_pred cCCceEEEeecCCceEEEEecccCCC
Confidence 99999999999999999999988543
|
|
| >KOG2445|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.1e-17 Score=153.20 Aligned_cols=210 Identities=12% Similarity=0.160 Sum_probs=160.9
Q ss_pred eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--CCCEEEEEcC
Q psy10778 318 VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSE 395 (556)
Q Consensus 318 ~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~ 395 (556)
.+..+|.+-|+|+.|.+.|+.+|+|+.|++|+|||.+.... ...+....+.|.+.|..+.|.+ -|+.++++|.
T Consensus 7 pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~-----~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~ 81 (361)
T KOG2445|consen 7 PIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSG-----TWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSY 81 (361)
T ss_pred ccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCC-----ceEEeeeEEecCCcEEEEEecCccccceEEEEec
Confidence 34458999999999999999999999999999999754321 1244567889999999999976 3789999999
Q ss_pred CCcEEEEeCCC---------CeEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC--C-----cE
Q psy10778 396 DGTCLLWDINT---------IGYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN--A-----QL 457 (556)
Q Consensus 396 Dg~I~iwdl~~---------~~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~--g-----~~ 457 (556)
|+++.||.-.. -....++.. . .+.|+.+.|.|. |-.+|+++ .||.||||+.- . .+
T Consensus 82 Drtv~iWEE~~~~~~~~~~~Wv~~ttl~D-s-rssV~DV~FaP~hlGLklA~~~-----aDG~lRIYEA~dp~nLs~W~L 154 (361)
T KOG2445|consen 82 DRTVSIWEEQEKSEEAHGRRWVRRTTLVD-S-RSSVTDVKFAPKHLGLKLAAAS-----ADGILRIYEAPDPMNLSQWTL 154 (361)
T ss_pred CCceeeeeecccccccccceeEEEEEeec-C-CcceeEEEecchhcceEEEEec-----cCcEEEEEecCCccccccchh
Confidence 99999997521 112334554 4 689999999985 56778887 89999999862 1 12
Q ss_pred EEEee--------cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCC----eEEEEecCCCCCCeEEEEE
Q psy10778 458 ITSLA--------SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKL----AHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 458 i~~~~--------~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~ 520 (556)
..++. +.....|+.|+ +......+|++|+.+ +.++||..... ..+.++. +|..+|++++|
T Consensus 155 q~Ei~~~~~pp~~~~~~~~CvsWn--~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~-d~~dpI~di~w 231 (361)
T KOG2445|consen 155 QHEIQNVIDPPGKNKQPCFCVSWN--PSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELP-DHTDPIRDISW 231 (361)
T ss_pred hhhhhhccCCcccccCcceEEeec--cccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcC-CCCCcceeeee
Confidence 22222 45678899999 443334788888866 57888876432 3455666 89999999999
Q ss_pred ecCC----CEEEEEcCCCcEEEEEcCC
Q psy10778 521 SCDS----QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 521 s~dg----~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|+- ..|++++.|| |+||.++.
T Consensus 232 APn~Gr~y~~lAvA~kDg-v~I~~v~~ 257 (361)
T KOG2445|consen 232 APNIGRSYHLLAVATKDG-VRIFKVKV 257 (361)
T ss_pred ccccCCceeeEEEeecCc-EEEEEEee
Confidence 9963 6899999999 99999984
|
|
| >KOG1273|consensus | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.2e-17 Score=153.48 Aligned_cols=242 Identities=12% Similarity=0.170 Sum_probs=181.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+||.|..||.|.+||..+......+. +|..+|++++|+++|+.|+|+|.|..|.+||+..+.-.....-..++....-|
T Consensus 37 ~lAvGc~nG~vvI~D~~T~~iar~ls-aH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~h 115 (405)
T KOG1273|consen 37 YLAVGCANGRVVIYDFDTFRIARMLS-AHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWH 115 (405)
T ss_pred eeeeeccCCcEEEEEccccchhhhhh-ccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeec
Confidence 99999999999999999877666664 89999999999999999999999999999999876411110000000000000
Q ss_pred ---------------------C----------------ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCC
Q psy10778 375 ---------------------S----------------ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD 417 (556)
Q Consensus 375 ---------------------~----------------~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h 417 (556)
. ..-.+..|.+.|+++++|...|.+.++|..+.+++..++. .
T Consensus 116 p~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~ri-t 194 (405)
T KOG1273|consen 116 PRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRI-T 194 (405)
T ss_pred cccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeee-c
Confidence 0 0011223666788999999999999999999998887765 3
Q ss_pred CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-----C---cEEEEee-----cCCCeEEEEEeeCCCCCcceEE
Q psy10778 418 PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-----A---QLITSLA-----SELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 418 ~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-----g---~~i~~~~-----~~~~i~~i~~s~~pdg~~~~~l 484 (556)
....|..+.++..|..++.-+ .|+.|+.|++. | ++-...+ ....-.+++|+ .+| .++
T Consensus 195 s~~~IK~I~~s~~g~~liiNt-----sDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs--~dg---eYv 264 (405)
T KOG1273|consen 195 SVQAIKQIIVSRKGRFLIINT-----SDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFS--GDG---EYV 264 (405)
T ss_pred hheeeeEEEEeccCcEEEEec-----CCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeec--CCc---cEE
Confidence 026899999999999999988 89999999874 1 1110111 13456789999 788 677
Q ss_pred EEEe-CCCeEEEEeCCCCeEEEEecCCCC-CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 485 VTGH-SDGTIQLWSGYKLAHLLTLNTNVA-LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 485 ~tg~-~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
+.|+ ....++||....|.+++.+. |.. .....+.|+|-...+++- ..|.|++|.....+.-..|
T Consensus 265 ~a~s~~aHaLYIWE~~~GsLVKILh-G~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~~~enwsaf 330 (405)
T KOG1273|consen 265 CAGSARAHALYIWEKSIGSLVKILH-GTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVVQVENWSAF 330 (405)
T ss_pred EeccccceeEEEEecCCcceeeeec-CCchhheeecccccceeeeeec-cCCceEEEEeecccchhhc
Confidence 6665 45679999999999999998 444 678899999988777776 7899999998775544433
|
|
| >KOG0302|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=5e-17 Score=156.95 Aligned_cols=226 Identities=17% Similarity=0.174 Sum_probs=167.8
Q ss_pred eEEeccCCCeEEEEeCCCC--------------CCcceEc-CCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSKEL--------------PATPVIR-PPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--------------~~~~~~~-~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~ 358 (556)
+.++=+..|.|.||++... +..+++. .+|...=.+++|||- ...|++|..-+.|++|...++..
T Consensus 167 ~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W 246 (440)
T KOG0302|consen 167 LCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSW 246 (440)
T ss_pred eeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeeccCce
Confidence 5566678899999987421 1112222 267777789999983 23588888889999999887532
Q ss_pred cccccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCCeE
Q psy10778 359 TNKIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNGEI 434 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~~i 434 (556)
.- -...+.+|+..|-.++|||. ...++|||.||+|+|||++.+ ..+.+ +. | .+.|+.|.|+.....|
T Consensus 247 ~v------d~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~-kA-h-~sDVNVISWnr~~~lL 317 (440)
T KOG0302|consen 247 KV------DQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST-KA-H-NSDVNVISWNRREPLL 317 (440)
T ss_pred ee------cCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe-ec-c-CCceeeEEccCCccee
Confidence 11 12456789999999999995 458999999999999999987 23333 66 8 8999999999998899
Q ss_pred EEEeecCcCCCCeEEEEEeC----CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-------
Q psy10778 435 ASVLQTTKTGGSILRLHTIN----AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------- 502 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~----g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------- 502 (556)
|+|+ .+|+++|||++ ++++.+++ |..+|+++.|+|..+ ..|++++.|..|.+||+....
T Consensus 318 asG~-----DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~----s~iaasg~D~QitiWDlsvE~D~ee~~~ 388 (440)
T KOG0302|consen 318 ASGG-----DDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHED----SVIAASGEDNQITIWDLSVEADEEEIDQ 388 (440)
T ss_pred eecC-----CCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccC----ceEEeccCCCcEEEEEeeccCChhhhcc
Confidence 9998 89999999997 67888885 789999999996434 589999999999999983211
Q ss_pred ----EEE------EecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEE
Q psy10778 503 ----HLL------TLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIW 539 (556)
Q Consensus 503 ----~~~------~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vw 539 (556)
-+. .|...-...+..+.|++.- .+|++.+.|| +.||
T Consensus 389 ~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVf 435 (440)
T KOG0302|consen 389 EAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVF 435 (440)
T ss_pred ccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEE
Confidence 011 1110124668889999864 5677777777 3444
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.76 E-value=2.6e-17 Score=168.31 Aligned_cols=239 Identities=14% Similarity=0.124 Sum_probs=172.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce-EcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCccccc---------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV-IRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIE--------- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~-~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~--------- 363 (556)
.|+.++.|.++++||+++.++... +..+|.+.|.+++|.+. ...|++|+.||.|.|||+..........
T Consensus 114 ~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~ 193 (720)
T KOG0321|consen 114 LLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRH 193 (720)
T ss_pred eEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccc
Confidence 788899999999999998876655 33499999999999985 4578999999999999998653111000
Q ss_pred -----c----cCCCeEeeCCCccEEE---EEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEEe------CCC-C--CCCC
Q psy10778 364 -----F----CKPPTILLGHSACVTD---LYLCAGFSVAVSSSE-DGTCLLWDINTIGYIREI------PCV-D--PNTP 421 (556)
Q Consensus 364 -----~----~~~~~~l~~h~~~V~~---l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l------~~~-h--~~~~ 421 (556)
. .+.+.....|...|.+ +.+..|...||+++. |+.|+|||++........ ..+ | ....
T Consensus 194 n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G 273 (720)
T KOG0321|consen 194 NTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVG 273 (720)
T ss_pred cCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceee
Confidence 0 0112233345555555 555667788888887 999999999975432211 110 1 0235
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC---cEEEEeecC---CCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTINA---QLITSLASE---LRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g---~~i~~~~~~---~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
+.++..+..|.++.+.| .|+.|++|++.+ .++..+.+. ..-..-..+ |++ .++++|+.|...++
T Consensus 274 ~~nL~lDssGt~L~AsC-----tD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lS--pd~---~~l~SgSsd~~ayi 343 (720)
T KOG0321|consen 274 QVNLILDSSGTYLFASC-----TDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELS--PDD---CSLLSGSSDEQAYI 343 (720)
T ss_pred eEEEEecCCCCeEEEEe-----cCCcEEEEeccccCcCchhhccCcccceeeeeeecC--CCC---ceEeccCCCcceee
Confidence 77888888889998888 899999999963 233333221 111122345 888 89999999999999
Q ss_pred EeCCCCeEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCC
Q psy10778 496 WSGYKLAHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 496 wd~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~ 543 (556)
|.+.+.+.--.+..+|...|++++|.|.. .-++++++|-++++|++.+
T Consensus 344 w~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~ 392 (720)
T KOG0321|consen 344 WVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSN 392 (720)
T ss_pred eeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEeccC
Confidence 99987765544444899999999998843 4577789999999999966
|
|
| >KOG4378|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=4.3e-17 Score=162.01 Aligned_cols=208 Identities=13% Similarity=0.134 Sum_probs=170.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
|++.|+..+.|+|||++...+.... .+|.+.|+++.++....+||+++..|.|.|..+.++ .....+...
T Consensus 93 y~~sgG~~~~Vkiwdl~~kl~hr~l-kdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~---------~~tt~f~~~ 162 (673)
T KOG4378|consen 93 YEISGGQSGCVKIWDLRAKLIHRFL-KDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTK---------QKTTTFTID 162 (673)
T ss_pred eeeccCcCceeeehhhHHHHHhhhc-cCCcceeEEEEecCCcceeEEeccCCcEEEEecccC---------ccccceecC
Confidence 8999999999999999954444444 489999999999999999999999999999999876 222333322
Q ss_pred -CccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEE
Q psy10778 375 -SACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 -~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iw 451 (556)
...|.-+.+++..+ +|.+++.+|.|.+||+.....+..+...| ..+...|+|+|... .|++.+ .|..|.+|
T Consensus 163 sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~H-sAP~~gicfspsne~l~vsVG-----~Dkki~~y 236 (673)
T KOG4378|consen 163 SGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAH-SAPCRGICFSPSNEALLVSVG-----YDKKINIY 236 (673)
T ss_pred CCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhc-cCCcCcceecCCccceEEEec-----ccceEEEe
Confidence 34566899999766 67789999999999999777666554338 89999999999754 566677 89999999
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCC
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg 524 (556)
|+. .+....+.-..+...++|+ ++| .+|+.|+..|.|..||++..+ ++..+. .|...|++++|-+.-
T Consensus 237 D~~s~~s~~~l~y~~Plstvaf~--~~G---~~L~aG~s~G~~i~YD~R~~k~Pv~v~s-ah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 237 DIRSQASTDRLTYSHPLSTVAFS--ECG---TYLCAGNSKGELIAYDMRSTKAPVAVRS-AHDASVTRVAFQPSP 305 (673)
T ss_pred ecccccccceeeecCCcceeeec--CCc---eEEEeecCCceEEEEecccCCCCceEee-ecccceeEEEeeecc
Confidence 998 4455566667899999999 999 899999999999999998765 566666 899999999998764
|
|
| >KOG2055|consensus | Back alignment and domain information |
|---|
Probab=99.75 E-value=9.8e-17 Score=158.58 Aligned_cols=202 Identities=14% Similarity=0.166 Sum_probs=172.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLW 402 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iw 402 (556)
.++|+++.|+|....+.+|+.||++++|.++... ...++.+.--..+|.+.+|.|+|. .+++++....++.|
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~-------N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKV-------NPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCcc-------ChhheeeeeccCccceeeecCCCceEEEecccceEEEEe
Confidence 4689999999999999999999999999998641 135577777788999999999999 89999999999999
Q ss_pred eCCCCeEEE--EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCC
Q psy10778 403 DINTIGYIR--EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGV 479 (556)
Q Consensus 403 dl~~~~~v~--~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~ 479 (556)
|+.+.+... ...+ ++...+....+++++++|+..+ ..|.|.+.... ++.+.+++.++.|..++|+ .++
T Consensus 286 Dle~ak~~k~~~~~g-~e~~~~e~FeVShd~~fia~~G-----~~G~I~lLhakT~eli~s~KieG~v~~~~fs--Sds- 356 (514)
T KOG2055|consen 286 DLETAKVTKLKPPYG-VEEKSMERFEVSHDSNFIAIAG-----NNGHIHLLHAKTKELITSFKIEGVVSDFTFS--SDS- 356 (514)
T ss_pred eccccccccccCCCC-cccchhheeEecCCCCeEEEcc-----cCceEEeehhhhhhhhheeeeccEEeeEEEe--cCC-
Confidence 999876433 2333 3235678899999999999999 89999998886 8899999999999999999 888
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+.|++.+.+|.|.+||+++..+++.+.....-.=++++.|+++.+||+|+..|.|.|||.++
T Consensus 357 --k~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s 418 (514)
T KOG2055|consen 357 --KELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNS 418 (514)
T ss_pred --cEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccch
Confidence 78888888999999999999999999742223346788889999999999999999999766
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=9.4e-18 Score=182.07 Aligned_cols=235 Identities=15% Similarity=0.184 Sum_probs=186.1
Q ss_pred ceEEeccCCCeEEEEeCCC---CC---CcceEcCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 294 GMICWNECDNLIRLKMSKE---LP---ATPVIRPPLGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~---~~---~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
++++.|.+||.|.+|+... +. .+... ..|.+.|..+.|++... .||+|+.||.|.|||+.....
T Consensus 81 GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~-~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~t-------- 151 (1049)
T KOG0307|consen 81 GLIAGGLEDGNIVLYDPASIIANASEEVLATK-SKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPET-------- 151 (1049)
T ss_pred ceeeccccCCceEEecchhhccCcchHHHhhh-cccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCC--------
Confidence 4899999999999999764 21 11222 26999999999999755 999999999999999986411
Q ss_pred CCeE-eeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-CCCeeEEEEeCCCC-eEEEEeecCc
Q psy10778 367 PPTI-LLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDP-NTPVSHVTMSETNG-EIASVLQTTK 442 (556)
Q Consensus 367 ~~~~-l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~-~~~V~~l~~sp~~~-~i~s~s~~~~ 442 (556)
+... -..-.+.|.+++|+..- ++|++++.+|.+.|||++..+.+-.+.. +. ...+..++|+|+.. .|++++.++
T Consensus 152 P~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~-~~~~~~~S~l~WhP~~aTql~~As~dd- 229 (1049)
T KOG0307|consen 152 PFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD-TPGRMHCSVLAWHPDHATQLLVASGDD- 229 (1049)
T ss_pred CCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-CCCccceeeeeeCCCCceeeeeecCCC-
Confidence 1111 22356789999998754 5889999999999999998887777765 41 23488999999864 555555332
Q ss_pred CCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 443 TGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
..-.|.+||++ ...++.+ .|...|.++.|++ .+. ++|++++.|+.|.+|+..+++.+..+. .....+..+.
T Consensus 230 -~~PviqlWDlR~assP~k~~~~H~~GilslsWc~--~D~--~lllSsgkD~~ii~wN~~tgEvl~~~p-~~~nW~fdv~ 303 (1049)
T KOG0307|consen 230 -SAPVIQLWDLRFASSPLKILEGHQRGILSLSWCP--QDP--RLLLSSGKDNRIICWNPNTGEVLGELP-AQGNWCFDVQ 303 (1049)
T ss_pred -CCceeEeecccccCCchhhhcccccceeeeccCC--CCc--hhhhcccCCCCeeEecCCCceEeeecC-CCCcceeeee
Confidence 55789999998 5667777 5789999999994 332 799999999999999999999999998 4678999999
Q ss_pred EecCCC-EEEEEcCCCcEEEEEcCCCC
Q psy10778 520 YSCDSQ-HLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 520 ~s~dg~-~l~sgs~Dg~V~vwdl~~~~ 545 (556)
|.|..- .+++++-||.|-|+.+.+..
T Consensus 304 w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 304 WCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred ecCCCcchhhhheeccceeeeeeecCC
Confidence 999764 78889999999999997743
|
|
| >KOG2048|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.9e-16 Score=160.18 Aligned_cols=205 Identities=19% Similarity=0.275 Sum_probs=167.1
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC-ccEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS-ACVTDLYLCAGFSVAVSSSEDGTCLLW 402 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iw 402 (556)
...|+|+|++.+.+.||.+-.||.|.+|++..+ .-+...+.++. ..|-+++|+ ++..|.|.+.+|+|.-|
T Consensus 25 Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~--------w~~~~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~Ew 95 (691)
T KOG2048|consen 25 PSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNN--------WFLEPVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEW 95 (691)
T ss_pred ccceEEEEEeccCCceeeeccCCcEEEEccCCC--------ceeeEEEecCCCCceeeEEEc-cCCeEEeecCCceEEEE
Confidence 357999999999999999999999999999864 12335566655 569999999 55678888999999999
Q ss_pred eCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe---ecCCCeEEEEEeeCCCC
Q psy10778 403 DINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL---ASELRITSVTFSNAPEG 478 (556)
Q Consensus 403 dl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~---~~~~~i~~i~~s~~pdg 478 (556)
|+.+++....+.. . .+.|.+++.+|.+..++.+| +||.+..+++. +++.... ...+++.+++|+ +++
T Consensus 96 Dl~~lk~~~~~d~-~-gg~IWsiai~p~~~~l~Igc-----ddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~--~~~ 166 (691)
T KOG2048|consen 96 DLHTLKQKYNIDS-N-GGAIWSIAINPENTILAIGC-----DDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWN--PTG 166 (691)
T ss_pred ecccCceeEEecC-C-CcceeEEEeCCccceEEeec-----CCceEEEEecCCceEEEEeecccccceEEEEEec--CCc
Confidence 9999999999988 6 79999999999999999999 89977777776 4433322 235899999999 888
Q ss_pred CcceEEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 479 VSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 479 ~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
..|++|+.||.|++||..++..+..... +...-|+++.+-.++ .|++|++-|.|.+||...+..+..+
T Consensus 167 ---~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd~-tI~sgDS~G~V~FWd~~~gTLiqS~ 241 (691)
T KOG2048|consen 167 ---TKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRDS-TIASGDSAGTVTFWDSIFGTLIQSH 241 (691)
T ss_pred ---cEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEeecC-cEEEecCCceEEEEcccCcchhhhh
Confidence 7799999999999999999887773221 123447888888665 6889999999999999887765544
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.74 E-value=8.1e-17 Score=153.90 Aligned_cols=231 Identities=14% Similarity=0.175 Sum_probs=174.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++.+...|+|++||..+++.+..+. ++...++.++|.. .+..+.+|+.||+|++||++.... ..+....
T Consensus 42 ~vav~lSngsv~lyd~~tg~~l~~fk-~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e-------~a~~~~~ 113 (376)
T KOG1188|consen 42 AVAVSLSNGSVRLYDKGTGQLLEEFK-GPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAE-------SARISWT 113 (376)
T ss_pred eEEEEecCCeEEEEeccchhhhheec-CCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchh-------hhheecc
Confidence 78889999999999999988888876 7888888888876 467899999999999999997632 2223444
Q ss_pred CCC-ccEEEEEEccCCCEEEEEcC----CCcEEEEeCCCCeE-EEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCC
Q psy10778 373 GHS-ACVTDLYLCAGFSVAVSSSE----DGTCLLWDINTIGY-IREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGG 445 (556)
Q Consensus 373 ~h~-~~V~~l~~s~~~~~l~sgs~----Dg~I~iwdl~~~~~-v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d 445 (556)
+|. .+..|++....+++++.|++ +-.+.+||++..+. ++.+...| ...|+++.|+|.. +.+++|+ .|
T Consensus 114 ~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH-~DDVT~lrFHP~~pnlLlSGS-----vD 187 (376)
T KOG1188|consen 114 QQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESH-NDDVTQLRFHPSDPNLLLSGS-----VD 187 (376)
T ss_pred CCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhc-cCcceeEEecCCCCCeEEeec-----cc
Confidence 555 56778888777888888864 67899999998765 66654438 8999999999965 5677777 89
Q ss_pred CeEEEEEeCCc-----EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC--------------------
Q psy10778 446 SILRLHTINAQ-----LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------------------- 500 (556)
Q Consensus 446 ~~I~iwdi~g~-----~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------------------- 500 (556)
|.|.+||+++. ++..+.+.+.|.++.|. ..+. +.|.+-+..++..+|++..
T Consensus 188 GLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~--~~~y--krI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~ 263 (376)
T KOG1188|consen 188 GLVNLFDTKKDNEEDALLHVINHGSSIHLIGWL--SKKY--KRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKE 263 (376)
T ss_pred ceEEeeecCCCcchhhHHHhhcccceeeeeeee--cCCc--ceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhh
Confidence 99999999742 45556677778888887 4432 4566666666777776511
Q ss_pred -----------------------------------------CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q psy10778 501 -----------------------------------------LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 501 -----------------------------------------~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
++.+..+..+|..-|+++.|...+..+++|++||.+.+|
T Consensus 264 ~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~W 343 (376)
T KOG1188|consen 264 DNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAW 343 (376)
T ss_pred hhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEE
Confidence 112223332456667788888888899999999999999
Q ss_pred EcCC
Q psy10778 540 ESSS 543 (556)
Q Consensus 540 dl~~ 543 (556)
..+.
T Consensus 344 k~~d 347 (376)
T KOG1188|consen 344 KVED 347 (376)
T ss_pred ecCC
Confidence 9544
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.73 E-value=3.6e-16 Score=151.83 Aligned_cols=208 Identities=18% Similarity=0.267 Sum_probs=167.6
Q ss_pred CCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCc
Q psy10778 321 PPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGT 398 (556)
Q Consensus 321 ~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~ 398 (556)
.+|.++|..++|+| +.+.||+||+|.+|.||++..+....... +++..|.||...|--++|+|.- +.|+|++.|.+
T Consensus 78 ~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lt--epvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~ 155 (472)
T KOG0303|consen 78 CGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLT--EPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNT 155 (472)
T ss_pred cCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcc--cceEEEeecceeEEEEeecccchhhHhhccCCce
Confidence 38999999999999 45789999999999999998764333333 7789999999999999999954 58999999999
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecC-CCeEEEEEeeC
Q psy10778 399 CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASE-LRITSVTFSNA 475 (556)
Q Consensus 399 I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~-~~i~~i~~s~~ 475 (556)
|.+|++.+|+.+.++. | ...|.++.|+.+|..+++++ .|..|++||.+ |+++..- .|. .....+.|-
T Consensus 156 v~iWnv~tgeali~l~--h-pd~i~S~sfn~dGs~l~Ttc-----kDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl-- 225 (472)
T KOG0303|consen 156 VSIWNVGTGEALITLD--H-PDMVYSMSFNRDGSLLCTTC-----KDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFL-- 225 (472)
T ss_pred EEEEeccCCceeeecC--C-CCeEEEEEeccCCceeeeec-----ccceeEEEcCCCCcEeeecccccCCCcceeEEe--
Confidence 9999999999998887 5 89999999999999999999 99999999998 7777766 343 234455566
Q ss_pred CCCCcceEEEEEe---CCCeEEEEeCCCCeE---EEEecCCCCCCeEEEEEecCCCEEEE-EcCCCcEEEEEcCCCC
Q psy10778 476 PEGVSQNVIVTGH---SDGTIQLWSGYKLAH---LLTLNTNVALPVIAVTYSCDSQHLYA-SNTEGLVIIWESSSHN 545 (556)
Q Consensus 476 pdg~~~~~l~tg~---~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l~~s~dg~~l~s-gs~Dg~V~vwdl~~~~ 545 (556)
.+| .++-||. ++..+-+||....+. +.++. ..+.|.---|.+|...++. |-.||.|+-|.+.+..
T Consensus 226 ~~g---~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elD--tSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~ 297 (472)
T KOG0303|consen 226 ASG---KIFTTGFSRMSERQIALWDPNNLEEPIALQELD--TSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEP 297 (472)
T ss_pred ccC---ceeeeccccccccceeccCcccccCcceeEEec--cCCceEEeeecCCCCEEEEEecCCcceEEEEecCCC
Confidence 677 6555554 567899999765542 34443 3566777778888887775 4568999999998754
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.2e-16 Score=157.90 Aligned_cols=203 Identities=19% Similarity=0.174 Sum_probs=162.1
Q ss_pred CCCCceEEEEEcCCC--CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCc
Q psy10778 322 PLGATIATATTAPDC--HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGT 398 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg--~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~ 398 (556)
.+...|++++|+|.. +.+|+|...|+|-+||+.+.... ..-+..+..|..+|.++.|+|.. ..+++.|.||+
T Consensus 184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d-----~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKD-----KDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCc-----cCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 478899999999964 57899999999999999633111 13456778999999999999965 58999999999
Q ss_pred EEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEe
Q psy10778 399 CLLWDINTIG--YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSL-ASELRITSVTFS 473 (556)
Q Consensus 399 I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s 473 (556)
|+.-|++.+. .+..+.. . ...+..+.++.+...++.+. .-|...+||.+ +.....+ .|...|++++++
T Consensus 259 iR~~D~~~~i~e~v~s~~~-d-~~~fs~~d~~~e~~~vl~~~-----~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~N 331 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVLSLDT-D-NIWFSSLDFSAESRSVLFGD-----NVGNFNVIDLRTDGSEYENLRLHKKKITSVALN 331 (498)
T ss_pred eeeeeecchhhHHHhhcCc-c-ceeeeeccccCCCccEEEee-----cccceEEEEeecCCccchhhhhhhcccceeecC
Confidence 9999998763 3344433 3 56778889998888888887 55699999997 4434333 366799999999
Q ss_pred eCCCCCcceEEEEEeCCCeEEEEeCCCCeE-----EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAH-----LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
|... .+|+|++.|++.+|||++.... +.++ .|...|.++.|||.+..|++.+.|..|+|||..
T Consensus 332 P~~p----~~laT~s~D~T~kIWD~R~l~~K~sp~lst~--~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 332 PVCP----WFLATASLDQTAKIWDLRQLRGKASPFLSTL--PHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred CCCc----hheeecccCcceeeeehhhhcCCCCcceecc--cccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 5444 5899999999999999986543 3333 589999999999998889999999999999984
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.6e-17 Score=163.11 Aligned_cols=239 Identities=15% Similarity=0.174 Sum_probs=173.4
Q ss_pred ceEEeccCCCeEEEEeCCC------CCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccc-cccc
Q psy10778 294 GMICWNECDNLIRLKMSKE------LPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNK-IEFC 365 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~------~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~-~~~~ 365 (556)
+.++.++.||.|.+|+++. ....+.+.+ +|.++|.|+++.+++..+++|+-||+|+.|++..+..... ....
T Consensus 307 p~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~ 386 (577)
T KOG0642|consen 307 PVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPS 386 (577)
T ss_pred CeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcc
Confidence 3788999999999999932 122233222 8999999999999999999999999999998773321110 0011
Q ss_pred CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
.....+.||.+.|+.+++|+....|+++|.||+++.|+...... .++..+...+-..++.+-.....+..+ +
T Consensus 387 vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~-------s 458 (577)
T KOG0642|consen 387 VLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA-------S 458 (577)
T ss_pred hhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh-------h
Confidence 33467899999999999999999999999999999999876554 444331102333444443322122222 2
Q ss_pred CeEEEEEe---C-CcEEEEeec--------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q psy10778 446 SILRLHTI---N-AQLITSLAS--------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513 (556)
Q Consensus 446 ~~I~iwdi---~-g~~i~~~~~--------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~ 513 (556)
.....+++ . +..+..+.. ...+.-+.+. |.+ .+.+++..|+.|+++|..+++++.... .|..
T Consensus 459 ~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~--~~~---~~~~~~hed~~Ir~~dn~~~~~l~s~~-a~~~ 532 (577)
T KOG0642|consen 459 FRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSH--PTA---DITFTAHEDRSIRFFDNKTGKILHSMV-AHKD 532 (577)
T ss_pred cccccccchhhhhhhheeeccccCCCcccccCccceEEec--CCC---CeeEecccCCceecccccccccchhee-eccc
Confidence 23333333 2 222222221 2456777777 777 799999999999999999999999998 7999
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
.++++++.|+|-+|++++.||++++|.+....+
T Consensus 533 svtslai~~ng~~l~s~s~d~sv~l~kld~k~~ 565 (577)
T KOG0642|consen 533 SVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTC 565 (577)
T ss_pred eecceeecCCCceEEeecCCceeehhhccchhe
Confidence 999999999999999999999999999976444
|
|
| >KOG2106|consensus | Back alignment and domain information |
|---|
Probab=99.72 E-value=2.1e-15 Score=150.50 Aligned_cols=218 Identities=16% Similarity=0.190 Sum_probs=175.3
Q ss_pred cCCCeEEEEeCCCCCCcce---EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 300 ECDNLIRLKMSKELPATPV---IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~---~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
...|.+..|+.+++.+... +......-|.|++|.++|+ ++||.++|.|.||+..+. +..+....|.+
T Consensus 219 ~Gk~H~~Fw~~~~~~l~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~---------~~~k~~~aH~g 288 (626)
T KOG2106|consen 219 CGKGHLYFWTLRGGSLVKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSKGTN---------RISKQVHAHDG 288 (626)
T ss_pred eCCceEEEEEccCCceEEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeCCCc---------eEEeEeeecCC
Confidence 4468999999987755433 3323347899999999875 779999999999998654 33355559999
Q ss_pred cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE------------EEE-----------------------------eCC
Q psy10778 377 CVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY------------IRE-----------------------------IPC 415 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~------------v~~-----------------------------l~~ 415 (556)
.|.+++...+|.+ +||++|+.|..||-. -+. +|+ ..+
T Consensus 289 gv~~L~~lr~Gtl-lSGgKDRki~~Wd~~-y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~g 366 (626)
T KOG2106|consen 289 GVFSLCMLRDGTL-LSGGKDRKIILWDDN-YRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQG 366 (626)
T ss_pred ceEEEEEecCccE-eecCccceEEecccc-ccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEe
Confidence 9999999999875 559999999999832 111 111 112
Q ss_pred CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 416 ~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
| ......++.+|+...+++++ .|+.+++|+ ..++..+.....++.|+.|+ |.| .++.|+..|...+
T Consensus 367 -h-~delwgla~hps~~q~~T~g-----qdk~v~lW~-~~k~~wt~~~~d~~~~~~fh--psg----~va~Gt~~G~w~V 432 (626)
T KOG2106|consen 367 -H-GDELWGLATHPSKNQLLTCG-----QDKHVRLWN-DHKLEWTKIIEDPAECADFH--PSG----VVAVGTATGRWFV 432 (626)
T ss_pred -c-ccceeeEEcCCChhheeecc-----CcceEEEcc-CCceeEEEEecCceeEeecc--Ccc----eEEEeeccceEEE
Confidence 4 45667888899999999998 899999999 77788888888999999999 886 8999999999999
Q ss_pred EeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 496 WSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 496 wd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
.|..+...+..-. . ..+++++.|+|+|.+||.|+.|+.|++|-+....
T Consensus 433 ~d~e~~~lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g 480 (626)
T KOG2106|consen 433 LDTETQDLVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANG 480 (626)
T ss_pred EecccceeEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCC
Confidence 9998866655554 3 7899999999999999999999999999997743
|
|
| >KOG0321|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.8e-16 Score=159.81 Aligned_cols=233 Identities=17% Similarity=0.206 Sum_probs=169.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCc-----ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPAT-----PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~-----~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+|+.+-+||.|.++|.+..... ...-..|...|..+.|.|....|++++.|.++++||+... +++.
T Consensus 66 iLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s---------~l~G 136 (720)
T KOG0321|consen 66 ILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS---------RLVG 136 (720)
T ss_pred eEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc---------eeec
Confidence 8999999999999998754322 1122379999999999997778999999999999999976 3333
Q ss_pred --EeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCe---------------------------EEEEeCCCCCC
Q psy10778 370 --ILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIG---------------------------YIREIPCVDPN 419 (556)
Q Consensus 370 --~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~---------------------------~v~~l~~~h~~ 419 (556)
.+.||...|.+++|.+... .+++|+.||.+.|||++-.. .++.... + .
T Consensus 137 ~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA-~-s 214 (720)
T KOG0321|consen 137 GRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA-A-S 214 (720)
T ss_pred ceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc-c-c
Confidence 4889999999999999665 88999999999999986421 0111222 3 3
Q ss_pred CCeeE---EEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-------EEEEee---c---CCCeEEEEEeeCCCCCcceE
Q psy10778 420 TPVSH---VTMSETNGEIASVLQTTKTGGSILRLHTINAQ-------LITSLA---S---ELRITSVTFSNAPEGVSQNV 483 (556)
Q Consensus 420 ~~V~~---l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-------~i~~~~---~---~~~i~~i~~s~~pdg~~~~~ 483 (556)
..|.+ +.+..|...||+++. .|+.|++||++.. .....+ + .-.+.+++.. ..| .+
T Consensus 215 ~ti~ssvTvv~fkDe~tlaSaga----~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lD--ssG---t~ 285 (720)
T KOG0321|consen 215 NTIFSSVTVVLFKDESTLASAGA----ADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILD--SSG---TY 285 (720)
T ss_pred CceeeeeEEEEEeccceeeeccC----CCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEec--CCC---Ce
Confidence 44555 556667889998883 5999999999622 222211 1 2356667666 677 67
Q ss_pred EEEEeCCCeEEEEeCCCCe--EEEEecCCCCCC--eEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 484 IVTGHSDGTIQLWSGYKLA--HLLTLNTNVALP--VIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 484 l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~--V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
|.+.+.|+.|++|++.+.. ++..+. ++... -..-..+||+.++++|+.|+..++|.+.+.+.-+
T Consensus 286 L~AsCtD~sIy~ynm~s~s~sP~~~~s-g~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~ 353 (720)
T KOG0321|consen 286 LFASCTDNSIYFYNMRSLSISPVAEFS-GKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPP 353 (720)
T ss_pred EEEEecCCcEEEEeccccCcCchhhcc-CcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCCh
Confidence 7777779999999997643 344443 22111 1122468999999999999999999998855433
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-16 Score=147.54 Aligned_cols=226 Identities=13% Similarity=0.125 Sum_probs=177.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-CCCC---ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-PLGA---TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~---~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+++..+.|.-|++||.-+++....+.. .|.+ ...+++|+|||.+|++|.. ..|+++|+...... ........+.
T Consensus 125 l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGyk-rcirvFdt~RpGr~-c~vy~t~~~~ 202 (406)
T KOG2919|consen 125 LFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGYK-RCIRVFDTSRPGRD-CPVYTTVTKG 202 (406)
T ss_pred eeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeeccc-ceEEEeeccCCCCC-Ccchhhhhcc
Confidence 888999999999999999988777653 3443 4468999999999998774 79999998433111 1110011122
Q ss_pred eeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 LLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
-.+..+-+.|++++|.. +.++.|+...++-|+.-..+.++..+-+ | .+.|+.+.|.++|+.+.+|+. .+..|.
T Consensus 203 k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llgg-h-~gGvThL~~~edGn~lfsGaR----k~dkIl 276 (406)
T KOG2919|consen 203 KFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGG-H-GGGVTHLQWCEDGNKLFSGAR----KDDKIL 276 (406)
T ss_pred cccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecc-c-CCCeeeEEeccCcCeeccccc----CCCeEE
Confidence 33557889999999955 4899999999999998888889999988 9 999999999999999999985 788999
Q ss_pred EEEeC--CcEEEEee-cC-CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCCeEEEEEecCC
Q psy10778 450 LHTIN--AQLITSLA-SE-LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 450 iwdi~--g~~i~~~~-~~-~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
.||++ +.++..+. |. ..-..|-|.-.|.+ ++|++|+.||.|++||+.. +..+..+. .+...+..++++|--
T Consensus 277 ~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~---~~LasG~tdG~V~vwdlk~~gn~~sv~~-~~sd~vNgvslnP~m 352 (406)
T KOG2919|consen 277 CWDIRYSRDPVYALERHVGDTNQRILFDLDPKG---EILASGDTDGSVRVWDLKDLGNEVSVTG-NYSDTVNGVSLNPIM 352 (406)
T ss_pred EEeehhccchhhhhhhhccCccceEEEecCCCC---ceeeccCCCccEEEEecCCCCCcccccc-cccccccceecCccc
Confidence 99998 55665553 32 24556777777889 9999999999999999987 66566666 678899999999987
Q ss_pred CEEEEEcC
Q psy10778 525 QHLYASNT 532 (556)
Q Consensus 525 ~~l~sgs~ 532 (556)
.++++++.
T Consensus 353 pilatssG 360 (406)
T KOG2919|consen 353 PILATSSG 360 (406)
T ss_pred ceeeeccC
Confidence 77776654
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=2e-16 Score=155.34 Aligned_cols=198 Identities=21% Similarity=0.216 Sum_probs=159.9
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10778 328 ATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~ 407 (556)
.+++++.+|..+++|+.||++|||+.... ..+.....|...|.++.|+|||+.|++.+.| ..+||+++++
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~---------~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g 217 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM---------LTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG 217 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc---------hhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC
Confidence 68999999999999999999999998765 4556678899999999999999999999999 9999999999
Q ss_pred eEEEEeCCCCCCCCeeEEEEeCCC---CeEEEEeecCcCCCCeEEEEEeC---C----cEEEEeecCCCeEEEEEeeCCC
Q psy10778 408 GYIREIPCVDPNTPVSHVTMSETN---GEIASVLQTTKTGGSILRLHTIN---A----QLITSLASELRITSVTFSNAPE 477 (556)
Q Consensus 408 ~~v~~l~~~h~~~~V~~l~~sp~~---~~i~s~s~~~~~~d~~I~iwdi~---g----~~i~~~~~~~~i~~i~~s~~pd 477 (556)
..+........+.....+.|+.++ .+.+.+... ..+.|+.|++. + +..+.......|.+++.+ .+
T Consensus 218 ~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~---~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS--~d 292 (398)
T KOG0771|consen 218 AALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQF---PGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVS--DD 292 (398)
T ss_pred chhhhcCCcccchhhhhceecccCCCceEEEEEecC---CCCceeEEEeeeeccccccchhhhhhccCcceeEEEc--CC
Confidence 777665530103445667777665 333333221 55677777763 2 122222345689999999 99
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
| ++++.|+.||.|-|++..+.+.++-+...|...|+.+.|+||.+.+++.+.|....|..+.-
T Consensus 293 G---kf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 293 G---KFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred C---cEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 9 99999999999999999999999988888999999999999999999999999988888755
|
|
| >KOG4328|consensus | Back alignment and domain information |
|---|
Probab=99.71 E-value=1.1e-15 Score=151.03 Aligned_cols=232 Identities=13% Similarity=0.176 Sum_probs=180.6
Q ss_pred eEEeccCCCeEEEEeCCCC---CCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKEL---PATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~---~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+++.|..-|.|-+||+.+. .....+-..|..+|.++.|+|. ...+++.|.||+|++-|++.... +.+..
T Consensus 202 lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~-------e~v~s 274 (498)
T KOG4328|consen 202 LVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNIS-------EEVLS 274 (498)
T ss_pred EEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhh-------HHHhh
Confidence 8999999999999999422 1222233379999999999985 46788999999999999987511 22233
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE-EEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY-IREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSIL 448 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~-v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I 448 (556)
+..-...+..+.++.+...++.|..=|...+||++++.. ...+.. | ...|..|+++|... ++|+++ .|+++
T Consensus 275 ~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~l-h-~kKI~sv~~NP~~p~~laT~s-----~D~T~ 347 (498)
T KOG4328|consen 275 LDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRL-H-KKKITSVALNPVCPWFLATAS-----LDQTA 347 (498)
T ss_pred cCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhh-h-hcccceeecCCCCchheeecc-----cCcce
Confidence 333455677888998888888888888999999998754 556666 8 78999999999765 566777 89999
Q ss_pred EEEEeC---Cc---EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC----CCCeEEEEecCCCC--C--C
Q psy10778 449 RLHTIN---AQ---LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG----YKLAHLLTLNTNVA--L--P 514 (556)
Q Consensus 449 ~iwdi~---g~---~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~----~~~~~~~~~~~~h~--~--~ 514 (556)
+|||++ ++ .+..+.|...|.++.|| |.+ --|+|.+.|..|+|||. ....+..++...+. . .
T Consensus 348 kIWD~R~l~~K~sp~lst~~HrrsV~sAyFS--Ps~---gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT 422 (498)
T KOG4328|consen 348 KIWDLRQLRGKASPFLSTLPHRRSVNSAYFS--PSG---GTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLT 422 (498)
T ss_pred eeeehhhhcCCCCcceecccccceeeeeEEc--CCC---CceEeeccCCceEEeecccccccCCccceeeccCccccccc
Confidence 999996 33 37777899999999999 776 45999999999999998 34445566653111 1 2
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
.....|.|+..++++|..-..|-|+|-..++
T Consensus 423 ~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 423 PFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred chhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 3456899999999999999999999988766
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.69 E-value=6.1e-16 Score=143.16 Aligned_cols=233 Identities=16% Similarity=0.177 Sum_probs=175.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccC----------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAS---------------- 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~---------------- 358 (556)
+|-.|..-|.|.+|.+.+.+....++..|...|+.+.-.|+ ..+.+-+.|+.+.+|++.....
T Consensus 27 rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~s~~i~i~Si~~nslgFCrf 105 (323)
T KOG0322|consen 27 RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAYSAFISIHSIVVNSLGFCRF 105 (323)
T ss_pred hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccCcceEEEeeeeccccccccc
Confidence 67788999999999999998888887678889999998887 6788999999999999875210
Q ss_pred ----ccccccc------------------CCCeE------eeCCCccEEEEEEcc-CCC--EEEEEcCCCcEEEEeCCCC
Q psy10778 359 ----TNKIEFC------------------KPPTI------LLGHSACVTDLYLCA-GFS--VAVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 359 ----~~~~~~~------------------~~~~~------l~~h~~~V~~l~~s~-~~~--~l~sgs~Dg~I~iwdl~~~ 407 (556)
.++..+. ....+ -.+..+.+.|..+.. +++ ++++|-++|.+.+||+.++
T Consensus 106 Sl~~~~k~~eqll~yp~rgsde~h~~D~g~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~ 185 (323)
T KOG0322|consen 106 SLVKKPKNSEQLLEYPSRGSDETHKQDGGDTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTG 185 (323)
T ss_pred eeccCCCcchhheecCCcccchhhhhccCccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCC
Confidence 0000000 00000 011234566666543 232 6778899999999999987
Q ss_pred eE----------EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---CcEE--EEee-cCCCeEEEE
Q psy10778 408 GY----------IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN---AQLI--TSLA-SELRITSVT 471 (556)
Q Consensus 408 ~~----------v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g~~i--~~~~-~~~~i~~i~ 471 (556)
.. +..... | ..+|.++.+.+.-..=++++ .+..+..|+++ |.+- .+.. .+-.+..+.
T Consensus 186 ~~~~~~~~~~kv~~~~as-h-~qpvlsldyas~~~rGisgg-----a~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvr 258 (323)
T KOG0322|consen 186 DKIIQLPQSSKVESPNAS-H-KQPVLSLDYASSCDRGISGG-----ADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVR 258 (323)
T ss_pred ceeeccccccccccchhh-c-cCcceeeeechhhcCCcCCC-----ccccceeeeeccccCcccccceEEecCCCccceE
Confidence 33 333445 7 78899999987655555666 67788999986 2221 1111 245677788
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
.- ||+ +++||++.||.||+|.-++++++..+. -|...|.+++|+|+...+++++.|++|.+|++
T Consensus 259 IR--pD~---KIlATAGWD~RiRVyswrtl~pLAVLk-yHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 259 IR--PDG---KILATAGWDHRIRVYSWRTLNPLAVLK-YHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred Ec--cCC---cEEeecccCCcEEEEEeccCCchhhhh-hhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 88 899 999999999999999999999999998 79999999999999999999999999999987
|
|
| >KOG0307|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.3e-16 Score=173.42 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=163.3
Q ss_pred CCCceEEEEEcCCCCE----EEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCCC
Q psy10778 323 LGATIATATTAPDCHT----LWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDG 397 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~----l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg 397 (556)
-...-..++|.+.|.. ||.|.+||.|.+|+...-.. +. ....+.+...|.+.|..+.|++... +|++|+.||
T Consensus 63 s~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~-~~--~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 63 SSNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIA-NA--SEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ccccceeeeecccCCCccceeeccccCCceEEecchhhcc-Cc--chHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 4456789999987765 88899999999999875211 11 1145677889999999999999765 999999999
Q ss_pred cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe-EEEEeecCcCCCCeEEEEEeCC-cEEEEee-c--CCCeEEEEE
Q psy10778 398 TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE-IASVLQTTKTGGSILRLHTINA-QLITSLA-S--ELRITSVTF 472 (556)
Q Consensus 398 ~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~-i~s~s~~~~~~d~~I~iwdi~g-~~i~~~~-~--~~~i~~i~~ 472 (556)
.|.|||++..+.-.+.........|.+++|+..-.+ +++++ .+|.+.|||++. +.+-.+. + ...+..++|
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s-----~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~W 214 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGS-----PSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAW 214 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccC-----CCCCceeccccCCCcccccccCCCccceeeeee
Confidence 999999997543333311011578999999987555 45555 788999999984 4444443 2 245889999
Q ss_pred eeCCCCCcceEEEEEeCC---CeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 473 SNAPEGVSQNVIVTGHSD---GTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~d---g~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+ |+.. ..|++++.| -.|.+||++.. ..++.+. +|...|.++.|++.+ ++|++++.|++|.+|+.++++.+
T Consensus 215 h--P~~a--Tql~~As~dd~~PviqlWDlR~assP~k~~~-~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl 289 (1049)
T KOG0307|consen 215 H--PDHA--TQLLVASGDDSAPVIQLWDLRFASSPLKILE-GHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVL 289 (1049)
T ss_pred C--CCCc--eeeeeecCCCCCceeEeecccccCCchhhhc-ccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEe
Confidence 9 6653 455555544 36999998864 4677776 899999999999976 89999999999999999998776
Q ss_pred Ceee
Q psy10778 548 PKFL 551 (556)
Q Consensus 548 ~~~~ 551 (556)
..+.
T Consensus 290 ~~~p 293 (1049)
T KOG0307|consen 290 GELP 293 (1049)
T ss_pred eecC
Confidence 5554
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=2.9e-15 Score=154.75 Aligned_cols=247 Identities=17% Similarity=0.179 Sum_probs=183.0
Q ss_pred eEEeccCCCeEEEEeCCCCC---------------------C---cc------eEcCCCCCceEEEEEcCCCCEEEEEeC
Q psy10778 295 MICWNECDNLIRLKMSKELP---------------------A---TP------VIRPPLGATIATATTAPDCHTLWLGLT 344 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~---------------------~---~~------~~~~~h~~~V~~i~~s~dg~~l~tgs~ 344 (556)
+||++|.|..||||.+.-+. . .. .+..+|.+.|.++.|.|.+..|.+++.
T Consensus 208 ~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSASa 287 (764)
T KOG1063|consen 208 LLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSASA 287 (764)
T ss_pred EEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheeccc
Confidence 89999999999999764221 0 00 122389999999999999999999999
Q ss_pred CCcEEEEEeeecc-----------Ccc--------------------------------cccccCCCeEeeCCCccEEEE
Q psy10778 345 SGNILVYEYELNA-----------STN--------------------------------KIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 345 Dg~I~vwd~~~~~-----------~~~--------------------------------~~~~~~~~~~l~~h~~~V~~l 381 (556)
|.++.+|...... ..+ ......+...+.||.+.|+++
T Consensus 288 DksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv 367 (764)
T KOG1063|consen 288 DKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDV 367 (764)
T ss_pred CcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccceeeccccccccccceee
Confidence 9999999865431 000 000112334567999999999
Q ss_pred EEccCCCEEEEEcCCCcEEEEeCC--------------------C---------------CeEEEE--------------
Q psy10778 382 YLCAGFSVAVSSSEDGTCLLWDIN--------------------T---------------IGYIRE-------------- 412 (556)
Q Consensus 382 ~~s~~~~~l~sgs~Dg~I~iwdl~--------------------~---------------~~~v~~-------------- 412 (556)
+|+|.|.+|+|.|.|-+-+++--- . .+.+|.
T Consensus 368 ~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i 447 (764)
T KOG1063|consen 368 DWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAI 447 (764)
T ss_pred eecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHH
Confidence 999999999999999776664211 0 000111
Q ss_pred -------------------------------------------------------------------------eCCCCCC
Q psy10778 413 -------------------------------------------------------------------------IPCVDPN 419 (556)
Q Consensus 413 -------------------------------------------------------------------------l~~~h~~ 419 (556)
+-+ | .
T Consensus 448 ~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYG-H-G 525 (764)
T KOG1063|consen 448 CGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYG-H-G 525 (764)
T ss_pred hCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhcc-C-c
Confidence 111 5 5
Q ss_pred CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEe
Q psy10778 420 TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd 497 (556)
..|.+++.+|+++.+|+++....-+...|++|+.. -..+..+ .|.-.|+.++|| ||| ++|++.+.|.++.+|.
T Consensus 526 yEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FS--pdg---~~LLsvsRDRt~sl~~ 600 (764)
T KOG1063|consen 526 YEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFS--PDG---RYLLSVSRDRTVSLYE 600 (764)
T ss_pred eeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEEC--CCC---cEEEEeecCceEEeee
Confidence 66899999999999999986544355679999986 2333334 577899999999 999 9999999999999998
Q ss_pred CCCCe-EE---EEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC--CCcCe
Q psy10778 498 GYKLA-HL---LTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH--NRTPK 549 (556)
Q Consensus 498 ~~~~~-~~---~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~--~~~~~ 549 (556)
..... .. .... .|..-|.+..|+|++.+++|+|.|.+|.||...+. +.++.
T Consensus 601 ~~~~~~~e~~fa~~k-~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 601 VQEDIKDEFRFACLK-AHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred eecccchhhhhcccc-ccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 74322 11 1233 78888999999999999999999999999999886 54444
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.1e-15 Score=150.37 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=177.8
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccC----ccccccc---CC------
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAS----TNKIEFC---KP------ 367 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~----~~~~~~~---~~------ 367 (556)
.+..+.+||...|...+.+. +|.+.|.|++|+.||+.+|+|+.|..|.+|.-...+. .+..+.+ .+
T Consensus 31 Ag~rlliyD~ndG~llqtLK-gHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~La 109 (1081)
T KOG1538|consen 31 AGSRLLVYDTSDGTLLQPLK-GHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLA 109 (1081)
T ss_pred cCCEEEEEeCCCcccccccc-cccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhh
Confidence 45789999999999888887 9999999999999999999999999999998653210 0000000 00
Q ss_pred -------------CeEeeCC--CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCC
Q psy10778 368 -------------PTILLGH--SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETN 431 (556)
Q Consensus 368 -------------~~~l~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~ 431 (556)
.+....| ...|.+++|..||++++.|-.+|+|.+-+-. ++....+..| .+.++|.+++|+|..
T Consensus 110 sCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~-gEek~~I~Rpgg~Nspiwsi~~~p~s 188 (1081)
T KOG1538|consen 110 SCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKN-GEEKVKIERPGGSNSPIWSICWNPSS 188 (1081)
T ss_pred hcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCC-CCcceEEeCCCCCCCCceEEEecCCC
Confidence 0001112 3467888999999999999999999998755 3333333221 126899999999964
Q ss_pred -----CeEEEEeecCcCCCCeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE
Q psy10778 432 -----GEIASVLQTTKTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL 505 (556)
Q Consensus 432 -----~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~ 505 (556)
..+++.. .+.++..|.+.|+.+..- ..+-...|+.+. ++| .+++.|+.|+.+++|. +.|-.+.
T Consensus 189 g~G~~di~aV~D-----W~qTLSFy~LsG~~Igk~r~L~FdP~CisYf--~NG---Ey~LiGGsdk~L~~fT-R~GvrLG 257 (1081)
T KOG1538|consen 189 GEGRNDILAVAD-----WGQTLSFYQLSGKQIGKDRALNFDPCCISYF--TNG---EYILLGGSDKQLSLFT-RDGVRLG 257 (1081)
T ss_pred CCCccceEEEEe-----ccceeEEEEecceeecccccCCCCchhheec--cCC---cEEEEccCCCceEEEe-ecCeEEe
Confidence 3566666 888999999999988743 445667888888 899 8999999999999997 5777788
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 506 TLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 506 ~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
++. ..+..|+.++..|+++.++.|+.||+|..|++-.
T Consensus 258 Tvg-~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~f 294 (1081)
T KOG1538|consen 258 TVG-EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIF 294 (1081)
T ss_pred ecc-ccceeEEEEEEccCCceEEEEEccCeeehhhhHH
Confidence 886 5678999999999999999999999999998744
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.67 E-value=2.7e-15 Score=140.60 Aligned_cols=230 Identities=14% Similarity=0.138 Sum_probs=166.0
Q ss_pred CeEEEEeC--CCCCCcceEcCCCCCceEEEEEcCCC-----CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC
Q psy10778 303 NLIRLKMS--KELPATPVIRPPLGATIATATTAPDC-----HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS 375 (556)
Q Consensus 303 g~I~lw~~--~~~~~~~~~~~~h~~~V~~i~~s~dg-----~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~ 375 (556)
+.|.+-.+ ++++.+..-.+.|.-+++.+.|.|+. +.|||.+ ..+|+|.+......-.....-....-..+.
T Consensus 73 Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~ 150 (364)
T KOG0290|consen 73 NKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFC 150 (364)
T ss_pred CeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccC
Confidence 44554433 34444444445788999999999985 3566654 589999987531111111000011123466
Q ss_pred ccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeE---EEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEE
Q psy10778 376 ACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGY---IREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRL 450 (556)
Q Consensus 376 ~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~---v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~i 450 (556)
+++++..|+. +-++|.++|-|.++.|||+.++.. ...+-. | ..+|..++|...+. .+|+++ .||.+|+
T Consensus 151 aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIA-H-DKEV~DIaf~~~s~~~FASvg-----aDGSvRm 223 (364)
T KOG0290|consen 151 APLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIA-H-DKEVYDIAFLKGSRDVFASVG-----ADGSVRM 223 (364)
T ss_pred CcccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEe-c-CcceeEEEeccCccceEEEec-----CCCcEEE
Confidence 7899999987 567899999999999999998632 345666 8 89999999998654 567777 8999999
Q ss_pred EEeCCcEEEEe----ec-CCCeEEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCCC-CeEEEEecCCCCCCeEEEEEecC
Q psy10778 451 HTINAQLITSL----AS-ELRITSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGYK-LAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 451 wdi~g~~i~~~----~~-~~~i~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
||++.....++ .. ..+...++|++ ... +++||-.. ...|.+.|++. ..++.++. +|.+.|.+++|.|.
T Consensus 224 FDLR~leHSTIIYE~p~~~~pLlRLswnk--qDp--nymATf~~dS~~V~iLDiR~P~tpva~L~-~H~a~VNgIaWaPh 298 (364)
T KOG0290|consen 224 FDLRSLEHSTIIYEDPSPSTPLLRLSWNK--QDP--NYMATFAMDSNKVVILDIRVPCTPVARLR-NHQASVNGIAWAPH 298 (364)
T ss_pred EEecccccceEEecCCCCCCcceeeccCc--CCc--hHHhhhhcCCceEEEEEecCCCcceehhh-cCcccccceEecCC
Confidence 99984333222 22 56788899984 332 78887554 45799999986 45788888 89999999999996
Q ss_pred C-CEEEEEcCCCcEEEEEcCCCCC
Q psy10778 524 S-QHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 524 g-~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
. .+|++++.|..+.+||+....+
T Consensus 299 S~~hictaGDD~qaliWDl~q~~~ 322 (364)
T KOG0290|consen 299 SSSHICTAGDDCQALIWDLQQMPR 322 (364)
T ss_pred CCceeeecCCcceEEEEecccccc
Confidence 5 7899999999999999988444
|
|
| >KOG1063|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=6.7e-15 Score=152.06 Aligned_cols=164 Identities=18% Similarity=0.267 Sum_probs=136.5
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCC-----cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDG-----TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
++.+.||...|++++.+|+++++||+++.. .|++|+..+-..+..+.. | +-.|+.++||||+++|++++
T Consensus 518 v~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~-H-sLTVT~l~FSpdg~~LLsvs---- 591 (764)
T KOG1063|consen 518 VHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEG-H-SLTVTRLAFSPDGRYLLSVS---- 591 (764)
T ss_pred hHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecc-c-ceEEEEEEECCCCcEEEEee----
Confidence 356789999999999999999999998653 589999998888888999 9 99999999999999999999
Q ss_pred CCCCeEEEEEeCCcEE------EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecC-CCCC
Q psy10778 443 TGGSILRLHTINAQLI------TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNT-NVAL 513 (556)
Q Consensus 443 ~~d~~I~iwdi~g~~i------~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~-~h~~ 513 (556)
+|+++.+|....... ....|..-|.++.|+ |++ .+++|++.|.+|++|..... +.+..+.. .+..
T Consensus 592 -RDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~--pde---~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~ 665 (764)
T KOG1063|consen 592 -RDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWS--PDE---KYFATASRDKKVKVWEEPDLRDKYISRFACLKFSL 665 (764)
T ss_pred -cCceEEeeeeecccchhhhhccccccceEEEEcccC--ccc---ceeEEecCCceEEEEeccCchhhhhhhhchhccCC
Confidence 999999998842111 122467788999999 888 78999999999999998777 44444222 5789
Q ss_pred CeEEEEEecC-----CCEEEEEcCCCcEEEEEcCC
Q psy10778 514 PVIAVTYSCD-----SQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 514 ~V~~l~~s~d-----g~~l~sgs~Dg~V~vwdl~~ 543 (556)
+|+.+++.|- +..+++|-+.|.|.+|..+.
T Consensus 666 aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~ 700 (764)
T KOG1063|consen 666 AVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKR 700 (764)
T ss_pred ceeeEEeeccccccccceEEEEecccEEEEEeccc
Confidence 9999999872 23788899999999999774
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.66 E-value=8.9e-15 Score=137.01 Aligned_cols=226 Identities=15% Similarity=0.128 Sum_probs=166.7
Q ss_pred eEEEEeCCCCC---------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 304 LIRLKMSKELP---------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 304 ~I~lw~~~~~~---------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+.||.+.... .+..+...+-+.|.|+.|.|++..+++-. |..|.+|++...+..... -+...-.+|
T Consensus 94 ~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vae---v~ss~s~e~ 169 (370)
T KOG1007|consen 94 GAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAE---VLSSESAEM 169 (370)
T ss_pred eEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchhee---ecccccccc
Confidence 35678775321 22223334567899999999999998876 789999999876321110 011122346
Q ss_pred CccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
....++-+|+| ++..+++. .|+++..||+++.+....+...| ...|+.+.|+|+..++++.+. .||.|++||
T Consensus 170 ~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAH-gq~vrdlDfNpnkq~~lvt~g----DdgyvriWD 243 (370)
T KOG1007|consen 170 RHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAH-GQRVRDLDFNPNKQHILVTCG----DDGYVRIWD 243 (370)
T ss_pred cceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcchhhhh-cceeeeccCCCCceEEEEEcC----CCccEEEEe
Confidence 77888999998 66666664 58999999999988877776547 788999999999776554442 899999999
Q ss_pred eC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-----------------------------
Q psy10778 453 IN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----------------------------- 500 (556)
Q Consensus 453 i~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----------------------------- 500 (556)
.+ ..++.++ .|...+.++.|++..+ .+|++|++|..|.+|...+
T Consensus 244 ~R~tk~pv~el~~HsHWvW~VRfn~~hd----qLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~ 319 (370)
T KOG1007|consen 244 TRKTKFPVQELPGHSHWVWAVRFNPEHD----QLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQ 319 (370)
T ss_pred ccCCCccccccCCCceEEEEEEecCccc----eEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhccccc
Confidence 98 5567766 4778999999995444 6999999999999996521
Q ss_pred CeEEEEecCCCCCCeEEEEEecC-CCEEEEEcCCCcEEEEEcCCC
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCD-SQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~d-g~~l~sgs~Dg~V~vwdl~~~ 544 (556)
...+.++. .|+..|.+++||.- --.+++-+-||++.|=.++..
T Consensus 320 dg~l~tyd-ehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~ 363 (370)
T KOG1007|consen 320 DGQLETYD-EHEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF 363 (370)
T ss_pred cccccccc-ccccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence 11234555 68999999999874 467788899999999777653
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.4e-13 Score=142.26 Aligned_cols=227 Identities=24% Similarity=0.391 Sum_probs=178.5
Q ss_pred EEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 296 ICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+..+..|+.+++|+... ......+. .|...|.++++++++..+++++. |+.+++|+.... ..+..+.+
T Consensus 127 ~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 196 (466)
T COG2319 127 LASSSLDGTVKLWDLSTPGKLIRTLE-GHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTG---------KPLSTLAG 196 (466)
T ss_pred eccCCCCccEEEEEecCCCeEEEEEe-cCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCC---------ceEEeecc
Confidence 33455599999999987 44444443 79999999999999999999885 999999999864 55677888
Q ss_pred CCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
|...|.+++|+|++. .+++++.|+.+++||...+..+. .+.. | .... ...|++++..+++++ .++.+++|
T Consensus 197 ~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~-~-~~~~-~~~~~~~~~~~~~~~-----~d~~~~~~ 268 (466)
T COG2319 197 HTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSG-H-SDSV-VSSFSPDGSLLASGS-----SDGTIRLW 268 (466)
T ss_pred CCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCC-C-Ccce-eEeECCCCCEEEEec-----CCCcEEEe
Confidence 999999999999998 56666999999999999888877 5777 7 5554 338999998888777 89999999
Q ss_pred EeC-CcE-EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCCeEEEEEecCCCEE
Q psy10778 452 TIN-AQL-ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 452 di~-g~~-i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l 527 (556)
++. ... +... .+...+.++.|. |++ ..+++++.|+.+++|+........... ..|...+..+.+.+++..+
T Consensus 269 ~~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (466)
T COG2319 269 DLRSSSSLLRTLSGHSSSVLSVAFS--PDG---KLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLL 343 (466)
T ss_pred eecCCCcEEEEEecCCccEEEEEEC--CCC---CEEEEeeCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEE
Confidence 997 222 3333 567899999999 666 677778888999999988777655553 2566789999994332455
Q ss_pred EEE-cCCCcEEEEEcCCCC
Q psy10778 528 YAS-NTEGLVIIWESSSHN 545 (556)
Q Consensus 528 ~sg-s~Dg~V~vwdl~~~~ 545 (556)
+.+ ..|+.+.+|++....
T Consensus 344 ~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 344 VSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred EEeecCCCcEEeeecCCCc
Confidence 555 688999999998865
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=1.2e-13 Score=142.75 Aligned_cols=230 Identities=26% Similarity=0.403 Sum_probs=182.0
Q ss_pred eEEeccCCCeEEEEeCCCCC-CcceEcCCCCCceEEEEE-cCCCC-EEEEEeC-CCcEEEEEeee-ccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELP-ATPVIRPPLGATIATATT-APDCH-TLWLGLT-SGNILVYEYEL-NASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-~~~~~~~~h~~~V~~i~~-s~dg~-~l~tgs~-Dg~I~vwd~~~-~~~~~~~~~~~~~~ 369 (556)
.++.++.|+.+.+|+..... ....+...+...+..+.+ .+++. .++..+. |+.+.+|+... . ....
T Consensus 79 ~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---------~~~~ 149 (466)
T COG2319 79 LLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPG---------KLIR 149 (466)
T ss_pred EEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEEecCCC---------eEEE
Confidence 56667789999999998775 444444223346777777 77777 4555444 99999999986 3 4457
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCe
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSE-DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSI 447 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~ 447 (556)
.+..|...|.+++|++++..+++++. |+.+++|++..+..+..+.. | ...+.+++++|++. .+++++ .++.
T Consensus 150 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~-----~d~~ 222 (466)
T COG2319 150 TLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAG-H-TDPVSSLAFSPDGGLLIASGS-----SDGT 222 (466)
T ss_pred EEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeecc-C-CCceEEEEEcCCcceEEEEec-----CCCc
Confidence 78999999999999999998888886 99999999999888999998 8 89999999999988 444435 8999
Q ss_pred EEEEEeC-CcEEE-Eee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCCeEEEEEecC
Q psy10778 448 LRLHTIN-AQLIT-SLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH-LLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 448 I~iwdi~-g~~i~-~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~d 523 (556)
+++||.. +..+. .+. +.... ...|+ +++ ..+++++.|+.+++|+...... +..+. +|...+.++.|+|+
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~-~~~~~--~~~---~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~ 295 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSV-VSSFS--PDG---SLLASGSSDGTIRLWDLRSSSSLLRTLS-GHSSSVLSVAFSPD 295 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcce-eEeEC--CCC---CEEEEecCCCcEEEeeecCCCcEEEEEe-cCCccEEEEEECCC
Confidence 9999887 66666 343 33333 22788 777 6888999999999999986664 55553 68899999999998
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 524 SQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+..+++++.|+.+.+|+..+....
T Consensus 296 ~~~~~~~~~d~~~~~~~~~~~~~~ 319 (466)
T COG2319 296 GKLLASGSSDGTVRLWDLETGKLL 319 (466)
T ss_pred CCEEEEeeCCCcEEEEEcCCCceE
Confidence 888888999999999988775543
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.65 E-value=4.1e-15 Score=151.26 Aligned_cols=230 Identities=13% Similarity=0.149 Sum_probs=176.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEEeeeccC------------c-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH--TLWLGLTSGNILVYEYELNAS------------T- 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~--~l~tgs~Dg~I~vwd~~~~~~------------~- 359 (556)
+|++|+.||+||+|.+.++.++..+. -.+.|.|++|+|.+. .||++-.. .+.|-+...+.. .
T Consensus 414 wlasGsdDGtvriWEi~TgRcvr~~~--~d~~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G~~~e~~~t~ell~~~~ 490 (733)
T KOG0650|consen 414 WLASGSDDGTVRIWEIATGRCVRTVQ--FDSEIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFGDRLEVGPTKELLASAP 490 (733)
T ss_pred eeeecCCCCcEEEEEeecceEEEEEe--ecceeEEEEecCCCCceeEEEEecC-ceEEeCccccchhhhcchhhhhhcCC
Confidence 89999999999999999999888876 456899999999765 45554433 344444332210 0
Q ss_pred --ccc----ccc---------CCCeEeeCCCccEEEEEEccCCCEEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCC
Q psy10778 360 --NKI----EFC---------KPPTILLGHSACVTDLYLCAGFSVAVSSSED---GTCLLWDINTIGYIREIPCVDPNTP 421 (556)
Q Consensus 360 --~~~----~~~---------~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iwdl~~~~~v~~l~~~h~~~~ 421 (556)
... ..+ .-++..-.|...|..+.|+..|.+|++...+ ..|.|+++.......-+.. . .+.
T Consensus 491 ~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~k-s-kG~ 568 (733)
T KOG0650|consen 491 NESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRK-S-KGL 568 (733)
T ss_pred CccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhh-c-CCc
Confidence 000 000 1234556688999999999999999987654 5789999987665555544 3 578
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~ 499 (556)
|.++.|+|...++++++ ...|++||+. +.++..+ .....|.+++.+ |.| .-|++|+.|+.+..+|+.
T Consensus 569 vq~v~FHPs~p~lfVaT------q~~vRiYdL~kqelvKkL~tg~kwiS~msih--p~G---Dnli~gs~d~k~~WfDld 637 (733)
T KOG0650|consen 569 VQRVKFHPSKPYLFVAT------QRSVRIYDLSKQELVKKLLTGSKWISSMSIH--PNG---DNLILGSYDKKMCWFDLD 637 (733)
T ss_pred eeEEEecCCCceEEEEe------ccceEEEehhHHHHHHHHhcCCeeeeeeeec--CCC---CeEEEecCCCeeEEEEcc
Confidence 99999999999998885 6799999996 4444444 345788999999 888 789999999999999986
Q ss_pred C-CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 500 K-LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 500 ~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
- .++.+++. .|...+++++|++.-.++++|+.||.+.|+.-
T Consensus 638 lsskPyk~lr-~H~~avr~Va~H~ryPLfas~sdDgtv~Vfhg 679 (733)
T KOG0650|consen 638 LSSKPYKTLR-LHEKAVRSVAFHKRYPLFASGSDDGTVIVFHG 679 (733)
T ss_pred cCcchhHHhh-hhhhhhhhhhhccccceeeeecCCCcEEEEee
Confidence 4 45677777 78999999999999999999999999999863
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.63 E-value=6e-15 Score=148.19 Aligned_cols=207 Identities=15% Similarity=0.113 Sum_probs=166.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.++..++||.+.+.+.. ++....+. +|.+.|.|-.|+|||.-|+++++||.|++|.-... ...++...
T Consensus 77 ~~~i~s~DGkf~il~k~-~rVE~sv~-AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGM----------LRStl~Q~ 144 (737)
T KOG1524|consen 77 TLLICSNDGRFVILNKS-ARVERSIS-AHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGM----------LRSTVVQN 144 (737)
T ss_pred eEEEEcCCceEEEeccc-chhhhhhh-hhhhhhhhcccCCCCceeeeecCCceEEEEeccch----------HHHHHhhc
Confidence 66777899999998754 44555554 89999999999999999999999999999996643 23455667
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
..+|.|++|.|+.+.++-+. .+.+.|=.+.....+-.++. | ++-|.++.|++....|++|+ +|-..++||..
T Consensus 145 ~~~v~c~~W~p~S~~vl~c~-g~h~~IKpL~~n~k~i~WkA-H-DGiiL~~~W~~~s~lI~sgG-----ED~kfKvWD~~ 216 (737)
T KOG1524|consen 145 EESIRCARWAPNSNSIVFCQ-GGHISIKPLAANSKIIRWRA-H-DGLVLSLSWSTQSNIIASGG-----EDFRFKIWDAQ 216 (737)
T ss_pred CceeEEEEECCCCCceEEec-CCeEEEeecccccceeEEec-c-CcEEEEeecCccccceeecC-----CceeEEeeccc
Confidence 78999999999987666543 45677777776666778888 9 99999999999999999999 99999999999
Q ss_pred CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
|..+..- .|+-+|++++|. |+. .++.|+. .++| +.....+.|..++||+||..++.|+..
T Consensus 217 G~~Lf~S~~~ey~ITSva~n--pd~----~~~v~S~-nt~R------------~~~p~~GSifnlsWS~DGTQ~a~gt~~ 277 (737)
T KOG1524|consen 217 GANLFTSAAEEYAITSVAFN--PEK----DYLLWSY-NTAR------------FSSPRVGSIFNLSWSADGTQATCGTST 277 (737)
T ss_pred CcccccCChhccceeeeeec--ccc----ceeeeee-eeee------------ecCCCccceEEEEEcCCCceeeccccC
Confidence 8876655 578899999999 773 5666653 2333 332346889999999999999999999
Q ss_pred CcEEEEE
Q psy10778 534 GLVIIWE 540 (556)
Q Consensus 534 g~V~vwd 540 (556)
|.+.+=.
T Consensus 278 G~v~~A~ 284 (737)
T KOG1524|consen 278 GQLIVAY 284 (737)
T ss_pred ceEEEee
Confidence 9876533
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.7e-15 Score=150.22 Aligned_cols=230 Identities=19% Similarity=0.223 Sum_probs=170.5
Q ss_pred ccCCCeEEEEeCCCC-CC----cceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 299 NECDNLIRLKMSKEL-PA----TPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~-~~----~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+.-|.|-|+++... ++ +..+ .....|+.+.|.| |...||+|+.||.|++|.+..+.. ....+++...+.
T Consensus 599 ~g~gG~iai~el~~PGrLPDgv~p~l--~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl--~e~~~tPe~~lt 674 (1012)
T KOG1445|consen 599 AGSGGVIAIYELNEPGRLPDGVMPGL--FNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGL--PENEMTPEKILT 674 (1012)
T ss_pred cCCCceEEEEEcCCCCCCCccccccc--ccCceeeecccCCCChHHeeecccCceEEEEEeccCCC--CcccCCcceeee
Confidence 456789999998642 21 2222 2456899999998 678999999999999999987632 233347778999
Q ss_pred CCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
+|...|+.+.|+| ....|++++.|-+|++||+.+++....+.+ | ...|..++|||+|+.+++.| .||+|++|
T Consensus 675 ~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~g-H-tdqIf~~AWSpdGr~~AtVc-----KDg~~rVy 747 (1012)
T KOG1445|consen 675 IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVG-H-TDQIFGIAWSPDGRRIATVC-----KDGTLRVY 747 (1012)
T ss_pred cccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheecc-C-cCceeEEEECCCCcceeeee-----cCceEEEe
Confidence 9999999999999 456899999999999999999999899999 9 99999999999999999999 99999999
Q ss_pred EeCC--cEEEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCC----CeEEEEeCCCC--eEEEEecCCCCCCeEEEEEe
Q psy10778 452 TINA--QLITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSD----GTIQLWSGYKL--AHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 452 di~g--~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~d----g~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s 521 (556)
..+. +.+..-+. ..+-..|.|. .+| +++++.+.| ..|.+||..+. ..+.+........+.--.+.
T Consensus 748 ~Prs~e~pv~Eg~gpvgtRgARi~wa--cdg---r~viv~Gfdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD 822 (1012)
T KOG1445|consen 748 EPRSREQPVYEGKGPVGTRGARILWA--CDG---RIVIVVGFDKSSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYD 822 (1012)
T ss_pred CCCCCCCccccCCCCccCcceeEEEE--ecC---cEEEEecccccchhhhhhhhhhhccCCcceeeeecccCcccccccc
Confidence 9973 34443322 2344567777 788 677766544 46888887543 33333321111111122344
Q ss_pred cCC-CEEEEEcCCCcEEEEEcCCC
Q psy10778 522 CDS-QHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 522 ~dg-~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+|. .++++|-.|..|.+|.+-..
T Consensus 823 ~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 823 YDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred CCCceEEEecCCCceEEEEEecCC
Confidence 554 46778888999999998653
|
|
| >KOG1007|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.6e-14 Score=135.38 Aligned_cols=230 Identities=15% Similarity=0.158 Sum_probs=169.2
Q ss_pred CCCeEEEEeCCC--CCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCC-------CcEEEEEeeeccCcccccccCCCeE
Q psy10778 301 CDNLIRLKMSKE--LPATPVIRPPLGATIATATTAPD-CHTLWLGLTS-------GNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 301 ~Dg~I~lw~~~~--~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~D-------g~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.|+.|.+.+.+. +.+.......|.+.|..++-+|- .+.|+|+..+ ..+.||.+...-..+.....+++..
T Consensus 38 ~dNqVhll~~d~e~s~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~ 117 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVAS 117 (370)
T ss_pred CcceeEEEEecCccchhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhc
Confidence 456777765543 33333333367899999999985 4566666432 2468999876533333333455566
Q ss_pred ee-CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE-EEEeCCC----CCCCCeeEEEEeC--CCCeEEEEeecCc
Q psy10778 371 LL-GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY-IREIPCV----DPNTPVSHVTMSE--TNGEIASVLQTTK 442 (556)
Q Consensus 371 l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~-v~~l~~~----h~~~~V~~l~~sp--~~~~i~s~s~~~~ 442 (556)
+. .+-+.|.|+.|.|++..+++-. |..|.+|++..+.. +..+..+ + ....++-+|+| ++..+++.
T Consensus 118 Ldteavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~-~~~ftsg~WspHHdgnqv~tt----- 190 (370)
T KOG1007|consen 118 LDTEAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEM-RHSFTSGAWSPHHDGNQVATT----- 190 (370)
T ss_pred CCHHHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccc-cceecccccCCCCccceEEEe-----
Confidence 65 5667999999999999998876 88999999988755 3333320 2 34567788988 57777777
Q ss_pred CCCCeEEEEEeC-CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEecCCCCCCeEEE
Q psy10778 443 TGGSILRLHTIN-AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLNTNVALPVIAV 518 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l 518 (556)
.++++..||++ .+....+ .|...+..+.|+ |+-. .+|++++.||.|++||.+.-+ ++.++. +|...|.++
T Consensus 191 -~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfN--pnkq--~~lvt~gDdgyvriWD~R~tk~pv~el~-~HsHWvW~V 264 (370)
T KOG1007|consen 191 -SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFN--PNKQ--HILVTCGDDGYVRIWDTRKTKFPVQELP-GHSHWVWAV 264 (370)
T ss_pred -CCCcEEEEEccchhhhcchhhhhcceeeeccCC--CCce--EEEEEcCCCccEEEEeccCCCccccccC-CCceEEEEE
Confidence 58999999998 3333333 467789999999 5543 789999999999999998654 678887 899999999
Q ss_pred EEecCC-CEEEEEcCCCcEEEEEcCC
Q psy10778 519 TYSCDS-QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 519 ~~s~dg-~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|+|.. +++++|+.|..|.+|....
T Consensus 265 Rfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 265 RFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred EecCccceEEEecCCCceeEEEeccc
Confidence 999954 7888999999999998765
|
|
| >KOG0303|consensus | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.7e-14 Score=138.96 Aligned_cols=165 Identities=16% Similarity=0.229 Sum_probs=138.6
Q ss_pred CeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCC-------eEEEEeCCCCCCCCeeEEEEeCCC-CeEEEEe
Q psy10778 368 PTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTI-------GYIREIPCVDPNTPVSHVTMSETN-GEIASVL 438 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~-------~~v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s 438 (556)
.-...||+++|..++|+|- ...|||||+|.+|.||++-.+ +++..+.+ | ...|-.++|+|.. +.|++++
T Consensus 74 ~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~g-H-~rrVg~V~wHPtA~NVLlsag 151 (472)
T KOG0303|consen 74 YPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYG-H-QRRVGLVQWHPTAPNVLLSAG 151 (472)
T ss_pred CCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEee-c-ceeEEEEeecccchhhHhhcc
Confidence 3467899999999999994 458999999999999998654 45677888 9 9999999999975 4566666
Q ss_pred ecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CCeE
Q psy10778 439 QTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA-LPVI 516 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~-~~V~ 516 (556)
.|++|.+|++. |+.+.++.|...|.+++|+ .+| .+|++.+.|.+|||||.++++.+..-. +|. ..-.
T Consensus 152 -----~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn--~dG---s~l~TtckDKkvRv~dpr~~~~v~e~~-~heG~k~~ 220 (472)
T KOG0303|consen 152 -----SDNTVSIWNVGTGEALITLDHPDMVYSMSFN--RDG---SLLCTTCKDKKVRVIDPRRGTVVSEGV-AHEGAKPA 220 (472)
T ss_pred -----CCceEEEEeccCCceeeecCCCCeEEEEEec--cCC---ceeeeecccceeEEEcCCCCcEeeecc-cccCCCcc
Confidence 89999999997 8888888999999999999 899 899999999999999999999998885 554 3455
Q ss_pred EEEEecCCCEEEEEc---CCCcEEEEEcCCCC
Q psy10778 517 AVTYSCDSQHLYASN---TEGLVIIWESSSHN 545 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs---~Dg~V~vwdl~~~~ 545 (556)
.+.|-.+|.++.+|- ++..+.+||..+-+
T Consensus 221 Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 221 RAIFLASGKIFTTGFSRMSERQIALWDPNNLE 252 (472)
T ss_pred eeEEeccCceeeeccccccccceeccCccccc
Confidence 667888888555553 46789999987733
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-14 Score=136.91 Aligned_cols=203 Identities=15% Similarity=0.166 Sum_probs=165.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
..+|+|.+|++|+..+|++.....|.||...... ..++..++..|...|++|+|+|..+.|++++.|...++|.
T Consensus 10 ~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~------~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~ 83 (361)
T KOG1523|consen 10 LEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD------LWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWT 83 (361)
T ss_pred cCceeeeeecCCCceEEeccCCceEEEEEecCCC------CceeceehhhhCcceeEEeecCCCCceeEccCCCCccccc
Confidence 4689999999999999999999999999987651 1256789999999999999999999999999999999999
Q ss_pred CC-CCeE--EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE----EEe--ecCCCeEEEEEee
Q psy10778 404 IN-TIGY--IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI----TSL--ASELRITSVTFSN 474 (556)
Q Consensus 404 l~-~~~~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i----~~~--~~~~~i~~i~~s~ 474 (556)
.. .++. ...+.. + +..++++.|+|.++.+|+++ ....|.+|-..++.- +++ ...+.|+++.|+
T Consensus 84 ~~~~~~WkptlvLlR-i-NrAAt~V~WsP~enkFAVgS-----gar~isVcy~E~ENdWWVsKhikkPirStv~sldWh- 155 (361)
T KOG1523|consen 84 QPSGGTWKPTLVLLR-I-NRAATCVKWSPKENKFAVGS-----GARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWH- 155 (361)
T ss_pred cCCCCeeccceeEEE-e-ccceeeEeecCcCceEEecc-----CccEEEEEEEecccceehhhhhCCccccceeeeecc-
Confidence 84 3433 223333 4 78899999999999999999 788999998875422 112 356889999999
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCC------------------CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGY------------------KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~------------------~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
|++ -+|++|+.|++.|++... -|++..++. ...+.|..+.|+|+|..|+-.+.|+.+
T Consensus 156 -pnn---VLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~-~~ggwvh~v~fs~sG~~lawv~Hds~v 230 (361)
T KOG1523|consen 156 -PNN---VLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEAS-SSGGWVHGVLFSPSGNRLAWVGHDSTV 230 (361)
T ss_pred -CCc---ceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhc-cCCCceeeeEeCCCCCEeeEecCCCce
Confidence 777 789999999999999752 123344443 346889999999999999999999999
Q ss_pred EEEEcCCCC
Q psy10778 537 IIWESSSHN 545 (556)
Q Consensus 537 ~vwdl~~~~ 545 (556)
.+-|.....
T Consensus 231 ~~~da~~p~ 239 (361)
T KOG1523|consen 231 SFVDAAGPS 239 (361)
T ss_pred EEeecCCCc
Confidence 999987643
|
|
| >KOG1188|consensus | Back alignment and domain information |
|---|
Probab=99.61 E-value=3e-14 Score=136.47 Aligned_cols=195 Identities=18% Similarity=0.272 Sum_probs=152.4
Q ss_pred CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEE--EE
Q psy10778 337 HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYI--RE 412 (556)
Q Consensus 337 ~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v--~~ 412 (556)
..+|++-..|.|++||..++ ..+..+.++...+..+.|.. ....+.+++.||+|++||++..... ..
T Consensus 41 ~~vav~lSngsv~lyd~~tg---------~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~ 111 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTG---------QLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARIS 111 (376)
T ss_pred eeEEEEecCCeEEEEeccch---------hhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhhee
Confidence 57888888999999999887 56788999999999999987 4568999999999999999986544 34
Q ss_pred eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEe
Q psy10778 413 IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGH 488 (556)
Q Consensus 413 l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~ 488 (556)
+.. ++..+..+++.+-.++.|++|.. ....+-.|.+||++ .++++.+ .|...|++++|. |... ++|++|+
T Consensus 112 ~~~-~~~~~f~~ld~nck~~ii~~GtE-~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFH--P~~p--nlLlSGS 185 (376)
T KOG1188|consen 112 WTQ-QSGTPFICLDLNCKKNIIACGTE-LTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFH--PSDP--NLLLSGS 185 (376)
T ss_pred ccC-CCCCcceEeeccCcCCeEEeccc-cccCceEEEEEEeccccchhhhhhhhccCcceeEEec--CCCC--CeEEeec
Confidence 444 41356777777767777777642 22256789999998 3446665 488999999999 4443 7999999
Q ss_pred CCCeEEEEeCCCCe----EEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 489 SDGTIQLWSGYKLA----HLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 489 ~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
.||.|.++|+..-. ++..+ .|...|.++.|..++ +.|.+-+..+...+|+++.+....
T Consensus 186 vDGLvnlfD~~~d~EeDaL~~vi--N~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~ 248 (376)
T KOG1188|consen 186 VDGLVNLFDTKKDNEEDALLHVI--NHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEET 248 (376)
T ss_pred ccceEEeeecCCCcchhhHHHhh--cccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhh
Confidence 99999999986543 33344 367889999999887 568888999999999999866443
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=7.2e-13 Score=135.58 Aligned_cols=231 Identities=13% Similarity=0.124 Sum_probs=156.2
Q ss_pred eEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+.+....|+.|++|++.+ +++...-...+.+....++++|++++|++++ .++.|.+|++... +.. ..+....
T Consensus 4 ~y~~~~~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~---g~l---~~~~~~~ 77 (330)
T PRK11028 4 VYIASPESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD---GAL---TFAAESP 77 (330)
T ss_pred EEEEcCCCCCEEEEEECCCCceeeeeEEecCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC---Cce---EEeeeec
Confidence 344456789999999964 3322222223446678899999999987764 5789999998632 111 1111111
Q ss_pred CCCccEEEEEEccCCCEEEEEc-CCCcEEEEeCCC-C---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSS-EDGTCLLWDINT-I---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~-~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
..+....++++|+++.+++++ .++.|.+|++.+ + +.+..+.. ......++++|+++++++++. .++.
T Consensus 78 -~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~---~~~~~~~~~~p~g~~l~v~~~----~~~~ 149 (330)
T PRK11028 78 -LPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEG---LEGCHSANIDPDNRTLWVPCL----KEDR 149 (330)
T ss_pred -CCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccC---CCcccEeEeCCCCCEEEEeeC----CCCE
Confidence 223467899999999888776 489999999974 2 23333333 345677899999999977763 6799
Q ss_pred EEEEEeC--CcEEE------EeecCCCeEEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCCC--C--eEEEEecC--C--
Q psy10778 448 LRLHTIN--AQLIT------SLASELRITSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGYK--L--AHLLTLNT--N-- 510 (556)
Q Consensus 448 I~iwdi~--g~~i~------~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~~--~--~~~~~~~~--~-- 510 (556)
|.+||++ +.+.. ..........++|+ |+| +++++++. ++.|.+|++.. + +.+..+.. .
T Consensus 150 v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~--pdg---~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~ 224 (330)
T PRK11028 150 IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFH--PNQ---QYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADF 224 (330)
T ss_pred EEEEEECCCCcccccCCCceecCCCCCCceEEEC--CCC---CEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcC
Confidence 9999996 33221 12234567789999 899 78877765 89999999863 2 33444431 0
Q ss_pred -CCCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCCC
Q psy10778 511 -VALPVIAVTYSCDSQHLYASNT-EGLVIIWESSSH 544 (556)
Q Consensus 511 -h~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~~ 544 (556)
+......+.++|++++++++.. ++.|.+|++...
T Consensus 225 ~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~ 260 (330)
T PRK11028 225 SDTRWAADIHITPDGRHLYACDRTASLISVFSVSED 260 (330)
T ss_pred CCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCC
Confidence 1122346889999999999865 689999999654
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.59 E-value=9.5e-14 Score=147.06 Aligned_cols=211 Identities=12% Similarity=0.046 Sum_probs=147.9
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+..|.+||...... ..+. .|...+.+.+|+|||+.|+.++.+ ..|++||+.++.. +.+..+.+| .
T Consensus 183 ~~~i~i~d~dg~~~-~~lt-~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~-------~~l~~~~g~---~ 250 (429)
T PRK01742 183 PYEVRVADYDGFNQ-FIVN-RSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR-------KVVASFRGH---N 250 (429)
T ss_pred eEEEEEECCCCCCc-eEec-cCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce-------EEEecCCCc---c
Confidence 57899999876543 3333 577789999999999999988654 3699999876410 111223333 3
Q ss_pred EEEEEccCCCEEEEE-cCCCcEEEE--eCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-
Q psy10778 379 TDLYLCAGFSVAVSS-SEDGTCLLW--DINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN- 454 (556)
Q Consensus 379 ~~l~~s~~~~~l~sg-s~Dg~I~iw--dl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~- 454 (556)
..++|+|+|+.|+.+ +.+|.+.|| |+.+++ .+.+.. + ...+...+|+|||+.|+.++. .++...+|+++
T Consensus 251 ~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~-~~~~~~~~wSpDG~~i~f~s~----~~g~~~I~~~~~ 323 (429)
T PRK01742 251 GAPAFSPDGSRLAFASSKDGVLNIYVMGANGGT-PSQLTS-G-AGNNTEPSWSPDGQSILFTSD----RSGSPQVYRMSA 323 (429)
T ss_pred CceeECCCCCEEEEEEecCCcEEEEEEECCCCC-eEeecc-C-CCCcCCEEECCCCCEEEEEEC----CCCCceEEEEEC
Confidence 468999999988775 468876655 666555 455555 5 667889999999998887763 56777788764
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 -AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
+.....+.+.. .+.+|+ |+| +.|+.++.++ +.+||+.+++...... .. ...++.|+|||+.|+.++.+
T Consensus 324 ~~~~~~~l~~~~--~~~~~S--pDG---~~ia~~~~~~-i~~~Dl~~g~~~~lt~-~~--~~~~~~~sPdG~~i~~~s~~ 392 (429)
T PRK01742 324 SGGGASLVGGRG--YSAQIS--ADG---KTLVMINGDN-VVKQDLTSGSTEVLSS-TF--LDESPSISPNGIMIIYSSTQ 392 (429)
T ss_pred CCCCeEEecCCC--CCccCC--CCC---CEEEEEcCCC-EEEEECCCCCeEEecC-CC--CCCCceECCCCCEEEEEEcC
Confidence 43333333332 457888 899 7888777665 5569998887543322 22 23567899999999999999
Q ss_pred CcEEEEEcC
Q psy10778 534 GLVIIWESS 542 (556)
Q Consensus 534 g~V~vwdl~ 542 (556)
|.+.+|.+-
T Consensus 393 g~~~~l~~~ 401 (429)
T PRK01742 393 GLGKVLQLV 401 (429)
T ss_pred CCceEEEEE
Confidence 988888763
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.7e-13 Score=145.30 Aligned_cols=237 Identities=14% Similarity=0.120 Sum_probs=172.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCc-----ceEcCCCCCceEEEEEcCCCC--EEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPAT-----PVIRPPLGATIATATTAPDCH--TLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~-----~~~~~~h~~~V~~i~~s~dg~--~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.|..+|.|-+||+..+... ......|..+|+.+.|..+.. -+++++.||.|+.|+++.-...........
T Consensus 257 ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~ 336 (555)
T KOG1587|consen 257 LLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLES 336 (555)
T ss_pred eEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhccccc
Confidence 8999999999999999866542 233346999999999987544 499999999999998775421111100000
Q ss_pred Ce---EeeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEe---CCCCe-----EEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 368 PT---ILLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWD---INTIG-----YIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 368 ~~---~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwd---l~~~~-----~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
.. .-..-...+++++|.+.. ..++.|+++|.|.--+ ..... ....... | .++|.++.++|-+..++
T Consensus 337 ~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~-h-~g~v~~v~~nPF~~k~f 414 (555)
T KOG1587|consen 337 KKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFIT-H-IGPVYAVSRNPFYPKNF 414 (555)
T ss_pred ccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccc-c-CcceEeeecCCCcccee
Confidence 00 001223468899998844 5799999999988733 32222 1224445 7 79999999999988777
Q ss_pred EEeecCcCCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecCC
Q psy10778 436 SVLQTTKTGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNTN 510 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~~ 510 (556)
..+ .|.++++|... ..++..+ .+...+++++|||... .+++++..||.|.+||+... .++.+.. -
T Consensus 415 ls~-----gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrp----avF~~~d~~G~l~iWDLl~~~~~Pv~s~~-~ 484 (555)
T KOG1587|consen 415 LSV-----GDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRP----AVFATVDGDGNLDIWDLLQDDEEPVLSQK-V 484 (555)
T ss_pred eee-----ccceeEeccccCCCCcchhhhhccceeeeeEEcCcCc----eEEEEEcCCCceehhhhhccccCCccccc-c
Confidence 777 79999999875 3444444 3456699999995433 58999999999999999643 4455554 2
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+....+.+.|+++|+.|++|+..|.+++|++..
T Consensus 485 ~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 485 CSPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred cccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 356778889999999999999999999999975
|
|
| >KOG1538|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=147.46 Aligned_cols=192 Identities=18% Similarity=0.229 Sum_probs=159.8
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
.|..++|-|||..|+.+.. ..+.+||...+ ..+.++++|++.|.|++|+.+|+.++||+.|..|++|+-.
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG---------~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~k 83 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDG---------TLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSK 83 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCc---------ccccccccccceEEEEEEccCCceeccCCCceeEEEeccc
Confidence 7899999999999888774 57899999887 6779999999999999999999999999999999999865
Q ss_pred CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEE
Q psy10778 406 TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIV 485 (556)
Q Consensus 406 ~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~ 485 (556)
- +-+..+. | ...|.|+.|+|-...+++++ -+..-+|+...+.+...+...++.+++|. .|| .+++
T Consensus 84 l-EG~LkYS--H-~D~IQCMsFNP~~h~LasCs------LsdFglWS~~qK~V~K~kss~R~~~CsWt--nDG---qyla 148 (1081)
T KOG1538|consen 84 L-EGILKYS--H-NDAIQCMSFNPITHQLASCS------LSDFGLWSPEQKSVSKHKSSSRIICCSWT--NDG---QYLA 148 (1081)
T ss_pred c-cceeeec--c-CCeeeEeecCchHHHhhhcc------hhhccccChhhhhHHhhhhheeEEEeeec--CCC---cEEE
Confidence 3 2333343 6 88999999999999999886 45677898887666666677899999999 899 8999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCC-----CEEEEEcCCCcEEEEEcCC
Q psy10778 486 TGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDS-----QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 486 tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg-----~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|..+|+|.+-+. +++....+.. +..++|.+++|+|.. ..+++.+...++..+.+..
T Consensus 149 lG~~nGTIsiRNk-~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG 212 (1081)
T KOG1538|consen 149 LGMFNGTISIRNK-NGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSG 212 (1081)
T ss_pred EeccCceEEeecC-CCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEecc
Confidence 9999999999875 4444333432 567899999999964 5788888888888888865
|
|
| >KOG0290|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-13 Score=129.42 Aligned_cols=219 Identities=15% Similarity=0.219 Sum_probs=160.0
Q ss_pred eEEeccCCCeEEEEeCCC--CCCcce------EcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCccccccc
Q psy10778 295 MICWNECDNLIRLKMSKE--LPATPV------IRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~--~~~~~~------~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
+||+ .+..+|+|.+.. .+.... ....+..++++..|+. +.+++.+.+-|.+..|||++++.. +
T Consensus 115 lLAT--s~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~-~----- 186 (364)
T KOG0290|consen 115 LLAT--SSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVS-G----- 186 (364)
T ss_pred hhhc--ccCeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeeccc-c-----
Confidence 5554 567899998863 221111 1124667999999985 678999999999999999998611 0
Q ss_pred CCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEe-CCCCCCCCeeEEEEeCC-CCeEEEEeecCc
Q psy10778 366 KPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREI-PCVDPNTPVSHVTMSET-NGEIASVLQTTK 442 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l-~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~ 442 (556)
.....|-+|..+|..|+|...+ +.++|.+.||+++++|++..+.-..+ +.+.+..+...++|++. .+++|+...
T Consensus 187 ~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~--- 263 (364)
T KOG0290|consen 187 TVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAM--- 263 (364)
T ss_pred ceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhc---
Confidence 2346788999999999999865 48999999999999999987554433 22111457888999875 466776653
Q ss_pred CCCCeEEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe------EEEEecCCCCC
Q psy10778 443 TGGSILRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------HLLTLNTNVAL 513 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------~~~~~~~~h~~ 513 (556)
....|.+.|++ +.++..+ .|.+.|+.++|. |... ..|.+++.|..+-+||+.+.- ++..+. ..+
T Consensus 264 -dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWa--PhS~--~hictaGDD~qaliWDl~q~~~~~~~dPilay~--a~~ 336 (364)
T KOG0290|consen 264 -DSNKVVILDIRVPCTPVARLRNHQASVNGIAWA--PHSS--SHICTAGDDCQALIWDLQQMPRENGEDPILAYT--AGG 336 (364)
T ss_pred -CCceEEEEEecCCCcceehhhcCcccccceEec--CCCC--ceeeecCCcceEEEEecccccccCCCCchhhhh--ccc
Confidence 45789999998 6677776 588999999999 4433 799999999999999986432 222232 367
Q ss_pred CeEEEEEecC-CCEEEEEc
Q psy10778 514 PVIAVTYSCD-SQHLYASN 531 (556)
Q Consensus 514 ~V~~l~~s~d-g~~l~sgs 531 (556)
.|..+.|++. ...++.+.
T Consensus 337 EVNqi~Ws~~~~Dwiai~~ 355 (364)
T KOG0290|consen 337 EVNQIQWSSSQPDWIAICF 355 (364)
T ss_pred eeeeeeecccCCCEEEEEe
Confidence 8999999964 45565554
|
|
| >KOG1009|consensus | Back alignment and domain information |
|---|
Probab=99.59 E-value=2.1e-14 Score=140.37 Aligned_cols=196 Identities=13% Similarity=0.116 Sum_probs=152.5
Q ss_pred CCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10778 324 GATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLW 402 (556)
Q Consensus 324 ~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iw 402 (556)
..+|..+.|.++.. .++||+.|..|++|.+..+...+.....+....|..|...|+++.|+|+|.+++||+.+|.+.+|
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lW 92 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLW 92 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEEE
Confidence 45788888888766 99999999999999998875444323345667889999999999999999999999999999999
Q ss_pred eCC--------C--------CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecC
Q psy10778 403 DIN--------T--------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASE 464 (556)
Q Consensus 403 dl~--------~--------~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~ 464 (556)
-.. + ....+.+.+ | ...|..++|+|++..+++++ .|+.+++||++ |+++..+ .|.
T Consensus 93 k~~~~~~~~~d~e~~~~ke~w~v~k~lr~-h-~~diydL~Ws~d~~~l~s~s-----~dns~~l~Dv~~G~l~~~~~dh~ 165 (434)
T KOG1009|consen 93 KQGDVRIFDADTEADLNKEKWVVKKVLRG-H-RDDIYDLAWSPDSNFLVSGS-----VDNSVRLWDVHAGQLLAILDDHE 165 (434)
T ss_pred EecCcCCccccchhhhCccceEEEEEecc-c-ccchhhhhccCCCceeeeee-----ccceEEEEEeccceeEeeccccc
Confidence 765 2 123345667 8 89999999999999999999 99999999998 8887777 578
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec-----C----C---------C----CCCeEEEEEec
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-----T----N---------V----ALPVIAVTYSC 522 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~-----~----~---------h----~~~V~~l~~s~ 522 (556)
..+..++|. |.+ .++++-+.|...+.+++...+.+.... . . | ..-.+.++|+|
T Consensus 166 ~yvqgvawD--pl~---qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTP 240 (434)
T KOG1009|consen 166 HYVQGVAWD--PLN---QYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTP 240 (434)
T ss_pred cccceeecc--hhh---hhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCC
Confidence 899999999 777 788888888766666653322222111 0 0 1 11235678999
Q ss_pred CCCEEEEEc
Q psy10778 523 DSQHLYASN 531 (556)
Q Consensus 523 dg~~l~sgs 531 (556)
||.+|++.+
T Consensus 241 dG~llvtPa 249 (434)
T KOG1009|consen 241 DGSLLVTPA 249 (434)
T ss_pred CCcEEEccc
Confidence 999998764
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-12 Score=120.31 Aligned_cols=227 Identities=14% Similarity=0.103 Sum_probs=168.2
Q ss_pred eEEeccCCCeEEEEeCCC---------CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc-cc--c
Q psy10778 295 MICWNECDNLIRLKMSKE---------LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAST-NK--I 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~---------~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~-~~--~ 362 (556)
|++.|..+|.|.+..+++ ++..-.-..+|.++|..++|. .+.|++|+ ||.|+=|........ .. .
T Consensus 24 ~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~E~~es~~~K~l 100 (325)
T KOG0649|consen 24 YLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWNEEEESLATKRL 100 (325)
T ss_pred EEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeehhhhhhccchhh
Confidence 899999999999987752 122222224899999999997 35777777 599999987654210 00 0
Q ss_pred cccC-CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 363 EFCK-PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 363 ~~~~-~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
.+.+ +.++-...--.|+++...|..+-++.++.|+.++-||+++|+..+++++ | ...|.+++--.....|++|+
T Consensus 101 we~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rG-H-tDYvH~vv~R~~~~qilsG~--- 175 (325)
T KOG0649|consen 101 WEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRG-H-TDYVHSVVGRNANGQILSGA--- 175 (325)
T ss_pred hhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcC-C-cceeeeeeecccCcceeecC---
Confidence 0000 1111111224688999998777677777999999999999999999999 9 99999999877778899999
Q ss_pred cCCCCeEEEEEeC-CcEEEEee---c--------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 442 KTGGSILRLHTIN-AQLITSLA---S--------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~---~--------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
+||++++||.+ ++.+..+. + ...|-+++-+ . .+|++|+ ...+.+|.+++.++...+.
T Consensus 176 --EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--e-----dWlvCGg-Gp~lslwhLrsse~t~vfp- 244 (325)
T KOG0649|consen 176 --EDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--E-----DWLVCGG-GPKLSLWHLRSSESTCVFP- 244 (325)
T ss_pred --CCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--C-----ceEEecC-CCceeEEeccCCCceEEEe-
Confidence 99999999998 77666653 2 2456677665 3 4677776 4679999999999988887
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
-..++..+.|..| .++++++.+.|.-|.+..
T Consensus 245 -ipa~v~~v~F~~d--~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 245 -IPARVHLVDFVDD--CVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred -cccceeEeeeecc--eEEEeccccceeeeeecc
Confidence 4578888899754 577788888888888755
|
|
| >KOG2919|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=3.5e-13 Score=128.30 Aligned_cols=227 Identities=13% Similarity=0.080 Sum_probs=163.1
Q ss_pred eEEeccCCCeEEEEeCCCC------------CCcceEcCCCCCceEEEEEc-------CCCCEEEEEeCCCcEEEEEeee
Q psy10778 295 MICWNECDNLIRLKMSKEL------------PATPVIRPPLGATIATATTA-------PDCHTLWLGLTSGNILVYEYEL 355 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~------------~~~~~~~~~h~~~V~~i~~s-------~dg~~l~tgs~Dg~I~vwd~~~ 355 (556)
.+.+-+.|+.+++|++... +....++......|...+|- |+..++++.+.+.-|++||.-+
T Consensus 63 ciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaft 142 (406)
T KOG2919|consen 63 CILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFT 142 (406)
T ss_pred eEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCccceeeeccccCceeeeeccc
Confidence 5556688999999987411 11222332344567777775 6778999999999999999988
Q ss_pred ccCcccccccCCCeEe--eCCCccE---EEEEEccCCCEEEEEcCCCcEEEEeC-CCCeE--EEEeCC----CCCCCCee
Q psy10778 356 NASTNKIEFCKPPTIL--LGHSACV---TDLYLCAGFSVAVSSSEDGTCLLWDI-NTIGY--IREIPC----VDPNTPVS 423 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~l--~~h~~~V---~~l~~s~~~~~l~sgs~Dg~I~iwdl-~~~~~--v~~l~~----~h~~~~V~ 423 (556)
+ +....+ ..|.+.+ .+++|+|||..|++|- ..+|+++|+ +.|+. ++.... .. .+-+.
T Consensus 143 G---------~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaGy-krcirvFdt~RpGr~c~vy~t~~~~k~gq-~giis 211 (406)
T KOG2919|consen 143 G---------KLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAGY-KRCIRVFDTSRPGRDCPVYTTVTKGKFGQ-KGIIS 211 (406)
T ss_pred c---------ccccchhhhhhHHhhhhheeEEecCCCCeEeecc-cceEEEeeccCCCCCCcchhhhhcccccc-cceee
Confidence 7 223333 3344443 5899999999998865 678999999 44432 221111 02 46688
Q ss_pred EEEEeCCCC-eEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCC
Q psy10778 424 HVTMSETNG-EIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY 499 (556)
Q Consensus 424 ~l~~sp~~~-~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~ 499 (556)
+++++|... .+++++ ....+-||.-. +.++..+ .|.+.|+.++|. ++| +.|.+|. .+-.|-.||++
T Consensus 212 c~a~sP~~~~~~a~gs-----Y~q~~giy~~~~~~pl~llggh~gGvThL~~~--edG---n~lfsGaRk~dkIl~WDiR 281 (406)
T KOG2919|consen 212 CFAFSPMDSKTLAVGS-----YGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWC--EDG---NKLFSGARKDDKILCWDIR 281 (406)
T ss_pred eeeccCCCCcceeeec-----ccceeeeEecCCCCceeeecccCCCeeeEEec--cCc---CeecccccCCCeEEEEeeh
Confidence 999999755 778887 77788888775 5555555 678999999999 899 8888887 47789999998
Q ss_pred C-CeEEEEecCCCCC-CeE--EEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 500 K-LAHLLTLNTNVAL-PVI--AVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 500 ~-~~~~~~~~~~h~~-~V~--~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
. ..++..+. .|.. .=. -....|++++|++|+.||.|++||+++
T Consensus 282 ~~~~pv~~L~-rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~ 328 (406)
T KOG2919|consen 282 YSRDPVYALE-RHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKD 328 (406)
T ss_pred hccchhhhhh-hhccCccceEEEecCCCCceeeccCCCccEEEEecCC
Confidence 5 45666666 4433 223 345568899999999999999999998
|
|
| >KOG1034|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=1.9e-13 Score=130.40 Aligned_cols=199 Identities=19% Similarity=0.218 Sum_probs=154.2
Q ss_pred CCCceEEEEEcCC----CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCC
Q psy10778 323 LGATIATATTAPD----CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDG 397 (556)
Q Consensus 323 h~~~V~~i~~s~d----g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg 397 (556)
|...-..++|+-+ ..++|+|+.-|.|+|.|+..+ +....+.+|...|+.|.++|+. ++++++|+|.
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~---------~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~ 158 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSG---------QCSKNYRGHGGSINEIKFHPDRPQLVLSASKDH 158 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchh---------hhccceeccCccchhhhcCCCCCcEEEEecCCc
Confidence 6667777888754 357899999999999999887 6778899999999999999976 5899999999
Q ss_pred cEEEEeCCCCeEEEEe---CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEE-----E--e------
Q psy10778 398 TCLLWDINTIGYIREI---PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLIT-----S--L------ 461 (556)
Q Consensus 398 ~I~iwdl~~~~~v~~l---~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~-----~--~------ 461 (556)
+|++|++++..++..+ .+ | ...|.++.|+.+|.+|++++ .|.+|++|+++.+.+. . +
T Consensus 159 svRlwnI~~~~Cv~VfGG~eg-H-rdeVLSvD~~~~gd~i~ScG-----mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~ 231 (385)
T KOG1034|consen 159 SVRLWNIQTDVCVAVFGGVEG-H-RDEVLSVDFSLDGDRIASCG-----MDHSLKLWRLNVKEFKNKLELSITYSPNKTT 231 (385)
T ss_pred eEEEEeccCCeEEEEeccccc-c-cCcEEEEEEcCCCCeeeccC-----CcceEEEEecChhHHhhhhhhhcccCCCCcc
Confidence 9999999999988876 45 8 88999999999999999999 9999999999722110 0 0
Q ss_pred -----------------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-Ce-------------EEEEecCC
Q psy10778 462 -----------------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LA-------------HLLTLNTN 510 (556)
Q Consensus 462 -----------------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~-------------~~~~~~~~ 510 (556)
-|...|-|+.|- | +++++-+.++.|..|.... .+ .+.++. -
T Consensus 232 ~pfpt~~~~fp~fst~diHrnyVDCvrw~----g---d~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~-~ 303 (385)
T KOG1034|consen 232 RPFPTPKTHFPDFSTTDIHRNYVDCVRWF----G---DFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFD-Y 303 (385)
T ss_pred CcCCccccccccccccccccchHHHHHHH----h---hheeecccCceEEEEecchhhhhhhccCCCccceeeeeEec-c
Confidence 123445555555 4 6888888899999997621 11 222332 2
Q ss_pred CCCCeEEEE--EecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 511 VALPVIAVT--YSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 511 h~~~V~~l~--~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
....|+-+. |.+-++.|+.|...|.|.+||++..+
T Consensus 304 ~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~e 340 (385)
T KOG1034|consen 304 PMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNE 340 (385)
T ss_pred CccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCC
Confidence 234455554 45667899999999999999998843
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.56 E-value=5e-15 Score=155.46 Aligned_cols=204 Identities=14% Similarity=0.154 Sum_probs=161.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|...|.|+.|...|.++++|+.|..++||...+. .+...+.||.+.|+.++.+.+..+++++|.|..|++
T Consensus 188 gH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~---------~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrv 258 (1113)
T KOG0644|consen 188 GHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETA---------RCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRV 258 (1113)
T ss_pred hhhhheeeeeeccccceEeecCccceeeeeeccch---------hhhccCCCCccccchhccchhhhhhhhcccCceEEE
Confidence 79999999999999999999999999999998876 778899999999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe------ecCCCeE-------
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL------ASELRIT------- 468 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~------~~~~~i~------- 468 (556)
|-+..+.++..+.+ | .+.|++++|+|-. +.+ .||++++||.+-..+... ....-+.
T Consensus 259 Wrl~~~~pvsvLrg-h-tgavtaiafsP~~----sss-----~dgt~~~wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~ 327 (1113)
T KOG0644|consen 259 WRLPDGAPVSVLRG-H-TGAVTAIAFSPRA----SSS-----DDGTCRIWDARLEPRIYVPRPLKFTEKDLVDSILFENN 327 (1113)
T ss_pred EecCCCchHHHHhc-c-ccceeeeccCccc----cCC-----CCCceEeccccccccccCCCCCCcccccceeeeecccc
Confidence 99999999999999 9 9999999999974 334 799999999862111110 0001111
Q ss_pred -------------------EEEEeeCCCC--------CcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 469 -------------------SVTFSNAPEG--------VSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 469 -------------------~i~~s~~pdg--------~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
+++|. ..+ ....+.+++-.+-.+++|++.+|.+++.+. +|...+..+.++
T Consensus 328 ~~~f~Tgs~d~ea~n~e~~~l~~~--~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~-ghsd~~yvLd~H 404 (1113)
T KOG0644|consen 328 GDRFLTGSRDGEARNHEFEQLAWR--SNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLM-GHSDEVYVLDVH 404 (1113)
T ss_pred ccccccccCCcccccchhhHhhhh--ccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhc-ccccceeeeeec
Confidence 11111 111 000233344455678899999999999888 899999999999
Q ss_pred cCC-CEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 522 CDS-QHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 522 ~dg-~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
|-. +...+++.||...|||+-.+..+.
T Consensus 405 pfn~ri~msag~dgst~iwdi~eg~pik 432 (1113)
T KOG0644|consen 405 PFNPRIAMSAGYDGSTIIWDIWEGIPIK 432 (1113)
T ss_pred CCCcHhhhhccCCCceEeeecccCCcce
Confidence 955 556689999999999997765543
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.55 E-value=8.3e-14 Score=140.47 Aligned_cols=205 Identities=15% Similarity=0.149 Sum_probs=156.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE-eeCCCccEEEEEEccC--CCEEEEEcCCCc
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI-LLGHSACVTDLYLCAG--FSVAVSSSEDGT 398 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~-l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~ 398 (556)
+|.+.|+|++|+.+|.+|++|+.|-.+.|||.-.. +++.. -.||.+.|.++.|-|. .++++||+.|..
T Consensus 48 GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---------KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~ 118 (758)
T KOG1310|consen 48 GHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---------KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKL 118 (758)
T ss_pred cccceecceeecCCCCEEeecCCcceEEeecchhc---------ceeeeeecccccceeEEeeeccCCCeEEEeccCcce
Confidence 89999999999999999999999999999998754 44444 3699999999999984 458999999999
Q ss_pred EEEEeCCCC----------eEEEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeCCcEE--EEee---
Q psy10778 399 CLLWDINTI----------GYIREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTINAQLI--TSLA--- 462 (556)
Q Consensus 399 I~iwdl~~~----------~~v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~g~~i--~~~~--- 462 (556)
|+++|+.+. +..+.+.+ | ...|..++..|++ ..+.+++ +||+++-+|++.... ....
T Consensus 119 i~lfdl~~~~~~~~d~~~~~~~~~~~c-h-t~rVKria~~p~~Phtfwsas-----EDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 119 IKLFDLDSSKEGGMDHGMEETTRCWSC-H-TDRVKRIATAPNGPHTFWSAS-----EDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred EEEEecccccccccccCccchhhhhhh-h-hhhhhheecCCCCCceEEEec-----CCcceeeecccCCccCCccccccH
Confidence 999999852 23445566 7 7889999999998 6677777 999999999973211 1100
Q ss_pred -----c--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC--------C----------eEEEEecCCCC-----
Q psy10778 463 -----S--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK--------L----------AHLLTLNTNVA----- 512 (556)
Q Consensus 463 -----~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~--------~----------~~~~~~~~~h~----- 512 (556)
+ --...|+..+ |... .+|++|+.|--.++||.+. + .++.-+..+|.
T Consensus 192 ~l~ny~~~lielk~ltis--p~rp--~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~g 267 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTIS--PSRP--YYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQG 267 (758)
T ss_pred HHHHhchhhheeeeeeec--CCCC--ceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCccc
Confidence 0 1356788888 4433 7999999999999999421 1 12444433332
Q ss_pred ------CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 513 ------LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 513 ------~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
..++-++|+|+|.-|++.-....|+++|+..++.
T Consensus 268 n~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~ 307 (758)
T KOG1310|consen 268 NLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKS 307 (758)
T ss_pred ccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCC
Confidence 1256788999998887776677899999988554
|
|
| >KOG0644|consensus | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.5e-14 Score=151.99 Aligned_cols=233 Identities=16% Similarity=0.228 Sum_probs=171.1
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
..++.+|+.|..++||..+++.+..... +|.+.|+.++.+.+..++++++.|..|++|.+..+ .++..+.
T Consensus 202 g~~Iitgsdd~lvKiwS~et~~~lAs~r-Ghs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~---------~pvsvLr 271 (1113)
T KOG0644|consen 202 GRYIITGSDDRLVKIWSMETARCLASCR-GHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDG---------APVSVLR 271 (1113)
T ss_pred cceEeecCccceeeeeeccchhhhccCC-CCccccchhccchhhhhhhhcccCceEEEEecCCC---------chHHHHh
Confidence 3489999999999999999988888776 99999999999999889999999999999999987 7889999
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC---CCCCCeeEEEEeCCCCeEEEEeecC--------
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV---DPNTPVSHVTMSETNGEIASVLQTT-------- 441 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~---h~~~~V~~l~~sp~~~~i~s~s~~~-------- 441 (556)
||++.|++|+|+|-- +.+.||++++||.+ ...+.....+ .....+.++.+...+..+++++.+.
T Consensus 272 ghtgavtaiafsP~~----sss~dgt~~~wd~r-~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~ 346 (1113)
T KOG0644|consen 272 GHTGAVTAIAFSPRA----SSSDDGTCRIWDAR-LEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFE 346 (1113)
T ss_pred ccccceeeeccCccc----cCCCCCceEecccc-ccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhh
Confidence 999999999999853 77899999999987 1111110000 0012223333333333333333111
Q ss_pred ------------------------cCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 442 ------------------------KTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 442 ------------------------~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
.-.+..+++|++- |.+.+.. .|...+..+.++ |-.. ++..+++.||...|
T Consensus 347 ~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~H--pfn~--ri~msag~dgst~i 422 (1113)
T KOG0644|consen 347 QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVH--PFNP--RIAMSAGYDGSTII 422 (1113)
T ss_pred HhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeec--CCCc--HhhhhccCCCceEe
Confidence 0023455666664 5555444 356778888888 4332 56778899999999
Q ss_pred EeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 496 WSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 496 wd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
||++.|.+++....+| ..+..-+||+||..++....-|.+.|.....++
T Consensus 423 wdi~eg~pik~y~~gh-~kl~d~kFSqdgts~~lsd~hgql~i~g~gqs~ 471 (1113)
T KOG0644|consen 423 WDIWEGIPIKHYFIGH-GKLVDGKFSQDGTSIALSDDHGQLYILGTGQSK 471 (1113)
T ss_pred eecccCCcceeeeccc-ceeeccccCCCCceEecCCCCCceEEeccCCCc
Confidence 9999999888777565 566677999999999988888999998875543
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.54 E-value=5.5e-12 Score=129.05 Aligned_cols=229 Identities=10% Similarity=0.053 Sum_probs=153.0
Q ss_pred eEEeccCCCeEEEEeCC-CCCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSK-ELPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~-~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+.+.+..++.|.+|+.. ++.....-.....+....++++|+++++++++ .++.|.+|+++...... +.+..+.
T Consensus 49 lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~-----~~~~~~~ 123 (330)
T PRK11028 49 LYVGVRPEFRVLSYRIADDGALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPV-----APIQIIE 123 (330)
T ss_pred EEEEECCCCcEEEEEECCCCceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCC-----Cceeecc
Confidence 33444568889999886 33332222112334567899999999988876 47899999986431111 1122222
Q ss_pred CCCccEEEEEEccCCCEEE-EEcCCCcEEEEeCCCCeEEE-------EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 373 GHSACVTDLYLCAGFSVAV-SSSEDGTCLLWDINTIGYIR-------EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~-sgs~Dg~I~iwdl~~~~~v~-------~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
+.....+++++|++++++ +...++.|.+||+.+...+. .... ......++|+|++++++++.. .
T Consensus 124 -~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~---g~~p~~~~~~pdg~~lyv~~~----~ 195 (330)
T PRK11028 124 -GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVE---GAGPRHMVFHPNQQYAYCVNE----L 195 (330)
T ss_pred -CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCC---CCCCceEEECCCCCEEEEEec----C
Confidence 223466788999998775 55567999999998633221 2222 355788999999999988873 4
Q ss_pred CCeEEEEEeC---CcE--EEEeec-------CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCe----EEEEe
Q psy10778 445 GSILRLHTIN---AQL--ITSLAS-------ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLA----HLLTL 507 (556)
Q Consensus 445 d~~I~iwdi~---g~~--i~~~~~-------~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~----~~~~~ 507 (556)
++.|.+|+++ ++. +..+.. ......+.++ |++ ++++++. .++.|.+|++.... .+..+
T Consensus 196 ~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~--pdg---~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~ 270 (330)
T PRK11028 196 NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHIT--PDG---RHLYACDRTASLISVFSVSEDGSVLSFEGHQ 270 (330)
T ss_pred CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEEC--CCC---CEEEEecCCCCeEEEEEEeCCCCeEEEeEEE
Confidence 8999999996 222 333221 1223468888 888 7888875 47899999985432 33333
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCC
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNT-EGLVIIWESSS 543 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~ 543 (556)
.. ......+.++|||++|+++.. ++.|.+|+++.
T Consensus 271 ~~--~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 271 PT--ETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred ec--cccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 31 235568999999999998775 89999998854
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.4e-13 Score=143.11 Aligned_cols=228 Identities=14% Similarity=0.134 Sum_probs=162.6
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEc---------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIR---------PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~---------~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~ 363 (556)
++.+|+.||.||||+--.. +....+. .+..+.=.-++|......|+++|.-..|+|||....
T Consensus 1125 LlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E------- 1197 (1387)
T KOG1517|consen 1125 LLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKE------- 1197 (1387)
T ss_pred heeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccc-------
Confidence 8899999999999975322 1111111 011111134567776667777776889999998764
Q ss_pred ccCCCeE-eeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCe---EEEEeCCCCCCCC--eeEEEEeCCCC-eEE
Q psy10778 364 FCKPPTI-LLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIG---YIREIPCVDPNTP--VSHVTMSETNG-EIA 435 (556)
Q Consensus 364 ~~~~~~~-l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~---~v~~l~~~h~~~~--V~~l~~sp~~~-~i~ 435 (556)
..... -.+....|+++.-+. .|+++++|-.||.|++||.+... .+...+. | ... |..+.+.+.|- .|+
T Consensus 1198 --~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~-h-~~~~~Iv~~slq~~G~~elv 1273 (1387)
T KOG1517|consen 1198 --QVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYRE-H-NDVEPIVHLSLQRQGLGELV 1273 (1387)
T ss_pred --eeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecc-c-CCcccceeEEeecCCCccee
Confidence 11222 234455677776654 46899999999999999988542 4666666 7 666 99999988664 499
Q ss_pred EEeecCcCCCCeEEEEEeCCcEEEEe----ec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 436 SVLQTTKTGGSILRLHTINAQLITSL----AS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~g~~i~~~----~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
+++ .+|.|++||+++.....+ .+ .+..+++..+ +.. .++|+|+. +.|+||++ .|+.+..+.
T Consensus 1274 Sgs-----~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH--~ha---piiAsGs~-q~ikIy~~-~G~~l~~~k 1341 (1387)
T KOG1517|consen 1274 SGS-----QDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVH--EHA---PIIASGSA-QLIKIYSL-SGEQLNIIK 1341 (1387)
T ss_pred eec-----cCCeEEEEecccCcccccceeeeccccCccceeeeec--cCC---CeeeecCc-ceEEEEec-Chhhhcccc
Confidence 999 899999999986322211 12 3469999999 777 79999998 99999998 444443332
Q ss_pred C------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 509 T------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 509 ~------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
. ...+.+.|++|+|..-++++|+.|..|.||...+..
T Consensus 1342 ~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1342 YNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred cCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCcC
Confidence 1 224678999999999999999999999999987754
|
|
| >KOG0649|consensus | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.5e-12 Score=119.47 Aligned_cols=209 Identities=16% Similarity=0.181 Sum_probs=151.5
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccc-ccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 327 IATATTAPDCHTLWLGLTSGNILVYEYELNASTNK-IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~-~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
|.+-+++|.+++|++|..+|+|-+..+..-..... .....++-..++|.++|..++|. ...|++|+ ||.|+-|..+
T Consensus 13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG~V~gw~W~ 89 (325)
T KOG0649|consen 13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DGLVYGWEWN 89 (325)
T ss_pred HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeee--hhheeecc-CceEEEeeeh
Confidence 45567899999999999999999999875422111 11113444568999999999998 34677765 5999999876
Q ss_pred CCeE------EEEeCCC-C----CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEE
Q psy10778 406 TIGY------IREIPCV-D----PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTF 472 (556)
Q Consensus 406 ~~~~------v~~l~~~-h----~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~ 472 (556)
.... +.....| | +-..|+++.+.|..+-++.++ .|+.++-||+. |+...+++ |.+.+.++.-
T Consensus 90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-----GD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~ 164 (325)
T KOG0649|consen 90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-----GDGVIYQVDLEDGRIQREYRGHTDYVHSVVG 164 (325)
T ss_pred hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEec-----CCeEEEEEEecCCEEEEEEcCCcceeeeeee
Confidence 4321 1111110 1 024688999999888888887 79999999998 88888885 7789999987
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CC--------CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NV--------ALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h--------~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
-. .. ..+++|++||++|+||.++++.+..+.. .| ...|.+++.+ ...|++|+ ...+.+|.++.
T Consensus 165 R~-~~----~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigala~~--edWlvCGg-Gp~lslwhLrs 236 (325)
T KOG0649|consen 165 RN-AN----GQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGALAVN--EDWLVCGG-GPKLSLWHLRS 236 (325)
T ss_pred cc-cC----cceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEEecc--CceEEecC-CCceeEEeccC
Confidence 41 33 4799999999999999999999988864 22 2335555554 55666554 66899999999
Q ss_pred CCCcCeee
Q psy10778 544 HNRTPKFL 551 (556)
Q Consensus 544 ~~~~~~~~ 551 (556)
.+.+..|.
T Consensus 237 se~t~vfp 244 (325)
T KOG0649|consen 237 SESTCVFP 244 (325)
T ss_pred CCceEEEe
Confidence 87766553
|
|
| >KOG0650|consensus | Back alignment and domain information |
|---|
Probab=99.51 E-value=3.5e-13 Score=137.38 Aligned_cols=217 Identities=12% Similarity=0.176 Sum_probs=171.7
Q ss_pred cCCCeEEEEeCCCCCCc---ceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 300 ECDNLIRLKMSKELPAT---PVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~---~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
..|+.+..|........ ..+...|...|+.+.|+..|.||++...+ ..|.|+++... ....-+..
T Consensus 494 ~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~---------~sQ~PF~k 564 (733)
T KOG0650|consen 494 EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKR---------KSQSPFRK 564 (733)
T ss_pred CCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecccc---------cccCchhh
Confidence 45678888976532211 12334799999999999999999998654 46888888765 22234555
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
..+.|.++.|+|...+++.++. ..|+|||+...+.+..+.. . ...|..++++|.|..|++++ .++.+..+|+
T Consensus 565 skG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~kqelvKkL~t-g-~kwiS~msihp~GDnli~gs-----~d~k~~WfDl 636 (733)
T KOG0650|consen 565 SKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLSKQELVKKLLT-G-SKWISSMSIHPNGDNLILGS-----YDKKMCWFDL 636 (733)
T ss_pred cCCceeEEEecCCCceEEEEec-cceEEEehhHHHHHHHHhc-C-CeeeeeeeecCCCCeEEEec-----CCCeeEEEEc
Confidence 5677999999999988888764 6799999998887777665 4 67899999999999999999 8999999999
Q ss_pred C--CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC------C---CeEEEEecCCCCCC----eEE
Q psy10778 454 N--AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY------K---LAHLLTLNTNVALP----VIA 517 (556)
Q Consensus 454 ~--g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~------~---~~~~~~~~~~h~~~----V~~ 517 (556)
. .++.+++. |...+++++|+ +.- .++++|+.||++.|+.-. . .-+++.+. +|... |..
T Consensus 637 dlsskPyk~lr~H~~avr~Va~H--~ry---PLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~-gH~~~~~~gVLd 710 (733)
T KOG0650|consen 637 DLSSKPYKTLRLHEKAVRSVAFH--KRY---PLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLR-GHEKTNDLGVLD 710 (733)
T ss_pred ccCcchhHHhhhhhhhhhhhhhc--ccc---ceeeeecCCCcEEEEeeeeehhhhcCCceEeeeecc-CceeecccceEe
Confidence 7 56666664 67899999999 666 899999999999988431 1 23556666 67544 899
Q ss_pred EEEecCCCEEEEEcCCCcEEEE
Q psy10778 518 VTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
+.|+|..-.|++++.||.|++|
T Consensus 711 ~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 711 TIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred ecccCCCceEEecCCCceEEee
Confidence 9999999999999999999998
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=4e-12 Score=122.79 Aligned_cols=233 Identities=14% Similarity=0.126 Sum_probs=158.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccc-----cCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEF-----CKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~-----~~~~ 368 (556)
.++.+..|.+||+|+... +....++......|+|++|-|. +..|++|+. +-|++|...........+. ...+
T Consensus 112 ~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qv 189 (445)
T KOG2139|consen 112 AFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQV 189 (445)
T ss_pred hhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhh
Confidence 466788999999999877 4445555455678999999996 456777776 6689998764321111110 0112
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSE-DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
..-.|| .+|+++.|.+||..+++++- |..|.|||..++..+..... . .+.++-+.||||+.+++++. -|+.
T Consensus 190 l~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~-g-lgg~slLkwSPdgd~lfaAt-----~dav 261 (445)
T KOG2139|consen 190 LQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPK-G-LGGFSLLKWSPDGDVLFAAT-----CDAV 261 (445)
T ss_pred eeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCccccccc-C-CCceeeEEEcCCCCEEEEec-----ccce
Confidence 233455 68999999999999999874 68899999999887766633 3 67899999999999999998 8999
Q ss_pred EEEEEeCCcE--EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC----CC--------e---EEEEecC-
Q psy10778 448 LRLHTINAQL--ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY----KL--------A---HLLTLNT- 509 (556)
Q Consensus 448 I~iwdi~g~~--i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~----~~--------~---~~~~~~~- 509 (556)
.++|+.+..- ..-....+.|...+|+ |+|. .+|.+.+.. -++|.+. .. + ++..+..
T Consensus 262 frlw~e~q~wt~erw~lgsgrvqtacWs--pcGs--fLLf~~sgs--p~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ 335 (445)
T KOG2139|consen 262 FRLWQENQSWTKERWILGSGRVQTACWS--PCGS--FLLFACSGS--PRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEV 335 (445)
T ss_pred eeeehhcccceecceeccCCceeeeeec--CCCC--EEEEEEcCC--ceEEEEeecCCCccccCcccceeeeeeccchhh
Confidence 9999775221 1222345699999999 8993 344444433 3444331 00 0 1111110
Q ss_pred ----C---CCCCeEEEEEecCCCEEEEEcCCCc--------EEEEEcCC
Q psy10778 510 ----N---VALPVIAVTYSCDSQHLYASNTEGL--------VIIWESSS 543 (556)
Q Consensus 510 ----~---h~~~V~~l~~s~dg~~l~sgs~Dg~--------V~vwdl~~ 543 (556)
+ ..+++.+++|.|.|.+|++.-..+. |..||...
T Consensus 336 ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~~i~~fdtr~ 384 (445)
T KOG2139|consen 336 TICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKLHISRFDTRK 384 (445)
T ss_pred hhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhhhhhhhcccc
Confidence 1 1467899999999999998765443 55666544
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.3e-12 Score=126.86 Aligned_cols=164 Identities=16% Similarity=0.109 Sum_probs=133.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
+|.+.|+++.|+.++++||+|+.|..+++|.++.... ....+++.... .|.+.|.|++|....+.+.+|..+++|+
T Consensus 54 ~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~---~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI 130 (609)
T KOG4227|consen 54 EHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMV---RKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVI 130 (609)
T ss_pred hhccccceeeeccCCeEEeecCCcceeeeechHHHHh---hcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeE
Confidence 7999999999999999999999999999999874311 11114455443 3558999999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCC-CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-----CcEEEEeecCCCeEEEEEee
Q psy10778 401 LWDINTIGYIREIPCVD-PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-----AQLITSLASELRITSVTFSN 474 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h-~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-----g~~i~~~~~~~~i~~i~~s~ 474 (556)
..|+.+.+.+..... . ..+.|..+..+|..+.+++.+ .++.|.+||++ +.++..........++-|.
T Consensus 131 ~HDiEt~qsi~V~~~-~~~~~~VY~m~~~P~DN~~~~~t-----~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~- 203 (609)
T KOG4227|consen 131 KHDIETKQSIYVANE-NNNRGDVYHMDQHPTDNTLIVVT-----RAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFH- 203 (609)
T ss_pred eeecccceeeeeecc-cCcccceeecccCCCCceEEEEe-----cCceEEEEeccCCCCCCceeeecCCCccceeeeec-
Confidence 999999888777654 1 035899999999999999988 89999999996 3344444556788899999
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
|... .+|++.+..|.+-+||.
T Consensus 204 -P~~P--~Li~~~~~~~G~~~~D~ 224 (609)
T KOG4227|consen 204 -PETP--ALILVNSETGGPNVFDR 224 (609)
T ss_pred -CCCc--eeEEeccccCCCCceee
Confidence 5543 78999999999999997
|
|
| >KOG1517|consensus | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.1e-12 Score=139.18 Aligned_cols=236 Identities=14% Similarity=0.118 Sum_probs=166.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC--CCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeecc-CcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP--LGATIATATTAP--DCHTLWLGLTSGNILVYEYELNA-STNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~--h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~-~~~~~~~~~~~~ 369 (556)
.++.+...-.|++||.+.++...-+..+ ....|+.+.+-. |..++.+|+.||.|+||+-.... .+.+.. .--.
T Consensus 1078 ~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLV--Taw~ 1155 (1387)
T KOG1517|consen 1078 QIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELV--TAWS 1155 (1387)
T ss_pred eeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccccCCceeE--Eeec
Confidence 6777777789999999988776666543 345788888865 45689999999999999854331 111111 1111
Q ss_pred EeeC----CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCC
Q psy10778 370 ILLG----HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTG 444 (556)
Q Consensus 370 ~l~~----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~ 444 (556)
.+.+ ..+.-.-+.|......|+++++-..|+|||......+..+.. .....|+++.-+.. |+.|++|. .
T Consensus 1156 ~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~-~s~t~vTaLS~~~~~gn~i~AGf-----a 1229 (1387)
T KOG1517|consen 1156 SLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPY-GSSTLVTALSADLVHGNIIAAGF-----A 1229 (1387)
T ss_pred cccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEecccceeEeeccc-CCCccceeecccccCCceEEEee-----c
Confidence 1121 122224467777666777777789999999998888887765 21566777766544 57888888 8
Q ss_pred CCeEEEEEeCC----cEEEEe-ecCCC--eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE--EecCCC---C
Q psy10778 445 GSILRLHTINA----QLITSL-ASELR--ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL--TLNTNV---A 512 (556)
Q Consensus 445 d~~I~iwdi~g----~~i~~~-~~~~~--i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~--~~~~~h---~ 512 (556)
||.|++||.+. ..+... .|... |..+.+. +.|. ..|++|+.+|.|++||++...... ++. .| .
T Consensus 1230 DGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq--~~G~--~elvSgs~~G~I~~~DlR~~~~e~~~~iv-~~~~yG 1304 (1387)
T KOG1517|consen 1230 DGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQ--RQGL--GELVSGSQDGDIQLLDLRMSSKETFLTIV-AHWEYG 1304 (1387)
T ss_pred CCceEEeecccCCccccceeecccCCcccceeEEee--cCCC--cceeeeccCCeEEEEecccCcccccceee-eccccC
Confidence 99999999972 233333 45544 8999998 5553 469999999999999998742221 222 22 2
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+..+++..+++...+++|+. +.|.||++...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~ 1335 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSGE 1335 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecChh
Confidence 35999999999999999998 99999999763
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.8e-12 Score=139.25 Aligned_cols=245 Identities=12% Similarity=0.089 Sum_probs=165.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCC-----cceEcCC-CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 294 GMICWNECDNLIRLKMSKELPA-----TPVIRPP-LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~-----~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.++++||.||+|++|+...-.. ....... ....+.++...+.++.+|+|+.||.|++.+++.... .......
T Consensus 1062 s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~--~~~~~~~ 1139 (1431)
T KOG1240|consen 1062 SLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNV--SKRVATQ 1139 (1431)
T ss_pred ceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEcccccc--ccceeee
Confidence 4999999999999999863211 1111111 467899999999999999999999999999886311 1111112
Q ss_pred CeEeeCCC--ccEEEEEEcc-CCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 368 PTILLGHS--ACVTDLYLCA-GFS-VAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h~--~~V~~l~~s~-~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.+....+. ..|.+-++.. ++. .++.+..-+.|..||++......+++.. . .+.|++++.+|.+.++++|.
T Consensus 1140 ~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~-hG~vTSi~idp~~~WlviGt---- 1214 (1431)
T KOG1240|consen 1140 VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLR-HGLVTSIVIDPWCNWLVIGT---- 1214 (1431)
T ss_pred eecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCcc-ccceeEEEecCCceEEEEec----
Confidence 22222222 2233334433 333 7888888999999999987655554431 2 47899999999999999999
Q ss_pred CCCCeEEEEEeC-CcEEEEeec--CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEEecCCCC------
Q psy10778 443 TGGSILRLHTIN-AQLITSLAS--ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTNVA------ 512 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~h~------ 512 (556)
..|.+.+||++ +.++....+ ..++..++.++.+...+ -.+.+|+ ..+.|.+|++.+|..-..+..+..
T Consensus 1215 -s~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S-~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~ 1292 (1431)
T KOG1240|consen 1215 -SRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQES-VSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSY 1292 (1431)
T ss_pred -CCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCc-eEEEecccCCCceeeeecccCcceEEEEcCCCCcchhh
Confidence 88999999999 777877754 46777777774333111 3344444 678999999988866555542200
Q ss_pred ------------CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 513 ------------LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 513 ------------~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
-+....++..-+..+++|+.|+.|+.||....+..
T Consensus 1293 ~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1293 ALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred hcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCcccc
Confidence 01112233334568999999999999999875443
|
|
| >KOG1587|consensus | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.7e-12 Score=136.22 Aligned_cols=233 Identities=16% Similarity=0.162 Sum_probs=164.6
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
++.+.+|+++.. ..+.+.......|+|+.|+|. ..++|.|..+|.|.+||+..+.... ....-.....|..+|+.
T Consensus 221 ~~~~~vW~~~~p-~~Pe~~~~~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~---~s~ls~~~~sh~~~v~~ 296 (555)
T KOG1587|consen 221 DGVLLVWSLKNP-NTPELVLESPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTP---PSGLSALEVSHSEPVTA 296 (555)
T ss_pred CceEEEEecCCC-CCceEEEecCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCC---CcccccccccCCcCeEE
Confidence 458999999876 444444456789999999984 6778888999999999998763321 00122345679999999
Q ss_pred EEEccCCC--EEEEEcCCCcEEEEeCCCCeE-EE-----EeC--C--CCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCe
Q psy10778 381 LYLCAGFS--VAVSSSEDGTCLLWDINTIGY-IR-----EIP--C--VDPNTPVSHVTMSETN-GEIASVLQTTKTGGSI 447 (556)
Q Consensus 381 l~~s~~~~--~l~sgs~Dg~I~iwdl~~~~~-v~-----~l~--~--~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~ 447 (556)
+.|-.+-. -++++|.||.|..|+++.... .. ... + ......+++++|.+.. ..+++|+ +.|.
T Consensus 297 vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT-----e~G~ 371 (555)
T KOG1587|consen 297 VVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT-----EEGK 371 (555)
T ss_pred EEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc-----CCcE
Confidence 99976543 499999999999998874322 10 001 0 0003568899998754 5667777 8888
Q ss_pred EEEEEeCC---cE------E-EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCCeE
Q psy10778 448 LRLHTINA---QL------I-TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVALPVI 516 (556)
Q Consensus 448 I~iwdi~g---~~------i-~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~ 516 (556)
|.--+-.| .. + ....|.+.|.++.++ |-+. ..+++++ |.+++||... ...++..+. .+...|+
T Consensus 372 v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~n--PF~~--k~fls~g-DW~vriWs~~~~~~Pl~~~~-~~~~~v~ 445 (555)
T KOG1587|consen 372 VYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRN--PFYP--KNFLSVG-DWTVRIWSEDVIASPLLSLD-SSPDYVT 445 (555)
T ss_pred EEEEeccCCcccccccccccccccccCcceEeeecC--CCcc--ceeeeec-cceeEeccccCCCCcchhhh-hccceee
Confidence 87744322 11 1 222467899999999 5552 3444444 9999999987 666777776 5667799
Q ss_pred EEEEecCC-CEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 517 AVTYSCDS-QHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 517 ~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
+++|||-. ..++++..||.|.+||+......|.
T Consensus 446 ~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 446 DVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred eeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 99999965 6788888999999999987555544
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=2.2e-11 Score=129.35 Aligned_cols=218 Identities=10% Similarity=0.061 Sum_probs=152.1
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT---SGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~---Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..|.++|..+....... .|...+.+.+|+|||+.|+..+. +..|.+|++.++ + ...+..+.+.+.
T Consensus 182 ~~l~~~d~dg~~~~~lt--~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g---------~-~~~l~~~~g~~~ 249 (435)
T PRK05137 182 KRLAIMDQDGANVRYLT--DGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETG---------Q-RELVGNFPGMTF 249 (435)
T ss_pred eEEEEECCCCCCcEEEe--cCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCC---------c-EEEeecCCCccc
Confidence 47888888655443333 57778999999999999988763 467999998765 1 234556667788
Q ss_pred EEEEccCCCEEE-EEcCCCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc
Q psy10778 380 DLYLCAGFSVAV-SSSEDGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456 (556)
Q Consensus 380 ~l~~s~~~~~l~-sgs~Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~ 456 (556)
+.+|+|+|+.|+ +.+.+|. |.+||+.+++. +.+.. + .......+|+|||+.|+..+... ....|+++|+++.
T Consensus 250 ~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~-~~Lt~-~-~~~~~~~~~spDG~~i~f~s~~~--g~~~Iy~~d~~g~ 324 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTT-TRLTD-S-PAIDTSPSYSPDGSQIVFESDRS--GSPQLYVMNADGS 324 (435)
T ss_pred CcEECCCCCEEEEEEecCCCceEEEEECCCCce-EEccC-C-CCccCceeEcCCCCEEEEEECCC--CCCeEEEEECCCC
Confidence 899999998764 5666665 77779887654 45555 4 56677899999999999876321 2347888898865
Q ss_pred EEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 457 LITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSD---GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 457 ~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
....+. ....+....|+ |+| +.|+..+.+ ..|.+||+..+. .+.+.. ...+....|+|||+.|+..+.
T Consensus 325 ~~~~lt~~~~~~~~~~~S--pdG---~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~--~~~~~~p~~spDG~~i~~~~~ 396 (435)
T PRK05137 325 NPRRISFGGGRYSTPVWS--PRG---DLIAFTKQGGGQFSIGVMKPDGSG-ERILTS--GFLVEGPTWAPNGRVIMFFRQ 396 (435)
T ss_pred CeEEeecCCCcccCeEEC--CCC---CEEEEEEcCCCceEEEEEECCCCc-eEeccC--CCCCCCCeECCCCCEEEEEEc
Confidence 444443 34566778899 899 677765533 368888875443 444442 235678899999998876554
Q ss_pred C------CcEEEEEcCCCC
Q psy10778 533 E------GLVIIWESSSHN 545 (556)
Q Consensus 533 D------g~V~vwdl~~~~ 545 (556)
+ ..+.++++..+.
T Consensus 397 ~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 397 TPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred cCCCCCcceEEEEECCCCc
Confidence 3 257888886643
|
|
| >KOG1524|consensus | Back alignment and domain information |
|---|
Probab=99.47 E-value=7e-13 Score=133.51 Aligned_cols=169 Identities=15% Similarity=0.259 Sum_probs=136.6
Q ss_pred CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q psy10778 337 HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV 416 (556)
Q Consensus 337 ~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~ 416 (556)
..++.++.||.+.+.+-.. +..+...+|.+.+.|-.|+|||.-|+++++||.|++|.-. |-...++..
T Consensus 76 d~~~i~s~DGkf~il~k~~----------rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs-GMLRStl~Q- 143 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSA----------RVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS-GMLRSTVVQ- 143 (737)
T ss_pred ceEEEEcCCceEEEecccc----------hhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc-chHHHHHhh-
Confidence 5788889999999877543 2335678999999999999999999999999999999843 433334443
Q ss_pred CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe--CCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEE
Q psy10778 417 DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI--NAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQ 494 (556)
Q Consensus 417 h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi--~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~ 494 (556)
. ..+|.|++|.|+...++.+ ..+.+.+=.+ +.++++-..|.+-|.++.|+ +.. +++++|++|-..+
T Consensus 144 ~-~~~v~c~~W~p~S~~vl~c------~g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~--~~s---~lI~sgGED~kfK 211 (737)
T KOG1524|consen 144 N-EESIRCARWAPNSNSIVFC------QGGHISIKPLAANSKIIRWRAHDGLVLSLSWS--TQS---NIIASGGEDFRFK 211 (737)
T ss_pred c-CceeEEEEECCCCCceEEe------cCCeEEEeecccccceeEEeccCcEEEEeecC--ccc---cceeecCCceeEE
Confidence 4 6789999999999888877 4567766655 46777777899999999999 666 7999999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 495 LWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 495 iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+||. .|..+..-. .|+-+|++++|.|+ +.++.++.
T Consensus 212 vWD~-~G~~Lf~S~-~~ey~ITSva~npd-~~~~v~S~ 246 (737)
T KOG1524|consen 212 IWDA-QGANLFTSA-AEEYAITSVAFNPE-KDYLLWSY 246 (737)
T ss_pred eecc-cCcccccCC-hhccceeeeeeccc-cceeeeee
Confidence 9996 566666665 68999999999999 55665653
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3e-11 Score=127.78 Aligned_cols=214 Identities=10% Similarity=0.013 Sum_probs=144.1
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT---SGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~---Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..|.++|.+........ .+...+.+.+|+|||+.|+..+. +..+.+|++.++. ...+....+.+.
T Consensus 179 ~~l~~~d~dg~~~~~lt--~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~----------~~~l~~~~~~~~ 246 (429)
T PRK03629 179 YELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA----------VRQVASFPRHNG 246 (429)
T ss_pred eeEEEEcCCCCCCEEee--cCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC----------eEEccCCCCCcC
Confidence 36888888765444433 35678999999999999987642 3568888886541 122222333445
Q ss_pred EEEEccCCCEEEEE-cCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC--eEEEEEeC
Q psy10778 380 DLYLCAGFSVAVSS-SEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS--ILRLHTIN 454 (556)
Q Consensus 380 ~l~~s~~~~~l~sg-s~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~--~I~iwdi~ 454 (556)
..+|+|||+.|+.. +.+| .|.+||+.+++..+.... ...+...+|+|+|+.|+.++. .++ .|+++|+.
T Consensus 247 ~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~---~~~~~~~~wSPDG~~I~f~s~----~~g~~~Iy~~d~~ 319 (429)
T PRK03629 247 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAYTSD----QAGRPQVYKVNIN 319 (429)
T ss_pred CeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCC---CCCcCceEECCCCCEEEEEeC----CCCCceEEEEECC
Confidence 68999999977754 5555 488899998765544433 567789999999999988873 233 45555666
Q ss_pred CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 455 AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSD---GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 455 g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+.....+. ......+.+|+ |+| +.|+..+.+ ..|.+||+.+++. ..+... .......|+|||+.|+.+
T Consensus 320 ~g~~~~lt~~~~~~~~~~~S--pDG---~~Ia~~~~~~g~~~I~~~dl~~g~~-~~Lt~~--~~~~~p~~SpDG~~i~~~ 391 (429)
T PRK03629 320 GGAPQRITWEGSQNQDADVS--SDG---KFMVMVSSNGGQQHIAKQDLATGGV-QVLTDT--FLDETPSIAPNGTMVIYS 391 (429)
T ss_pred CCCeEEeecCCCCccCEEEC--CCC---CEEEEEEccCCCceEEEEECCCCCe-EEeCCC--CCCCCceECCCCCEEEEE
Confidence 43333332 33455678899 899 677665433 3588899877764 344322 223467899999999988
Q ss_pred cCCCc---EEEEEcCC
Q psy10778 531 NTEGL---VIIWESSS 543 (556)
Q Consensus 531 s~Dg~---V~vwdl~~ 543 (556)
+.++. +.++++..
T Consensus 392 s~~~~~~~l~~~~~~G 407 (429)
T PRK03629 392 SSQGMGSVLNLVSTDG 407 (429)
T ss_pred EcCCCceEEEEEECCC
Confidence 87764 67777754
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.46 E-value=1.4e-11 Score=130.77 Aligned_cols=215 Identities=12% Similarity=0.081 Sum_probs=146.5
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..|.+||........+. .+...+.+.+|+|||+.|+.++.+ ..|.+|++..+ + ...+..+.+...
T Consensus 184 ~~l~i~D~~g~~~~~lt--~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g---------~-~~~l~~~~g~~~ 251 (433)
T PRK04922 184 YALQVADSDGYNPQTIL--RSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATG---------Q-RELVASFRGING 251 (433)
T ss_pred EEEEEECCCCCCceEee--cCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCC---------C-EEEeccCCCCcc
Confidence 46888998655443333 466789999999999999987643 46889998764 1 123344445556
Q ss_pred EEEEccCCCEEE-EEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC--eEEEEEeC
Q psy10778 380 DLYLCAGFSVAV-SSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS--ILRLHTIN 454 (556)
Q Consensus 380 ~l~~s~~~~~l~-sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~--~I~iwdi~ 454 (556)
+.+|+|+|+.++ +.+.+| .|.+||+.+++. +.+.. + .......+|+|+|+.|+.++. .++ .|++++++
T Consensus 252 ~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~-~~lt~-~-~~~~~~~~~spDG~~l~f~sd----~~g~~~iy~~dl~ 324 (433)
T PRK04922 252 APSFSPDGRRLALTLSRDGNPEIYVMDLGSRQL-TRLTN-H-FGIDTEPTWAPDGKSIYFTSD----RGGRPQIYRVAAS 324 (433)
T ss_pred CceECCCCCEEEEEEeCCCCceEEEEECCCCCe-EECcc-C-CCCccceEECCCCCEEEEEEC----CCCCceEEEEECC
Confidence 789999998665 555565 599999988764 44555 4 455678899999999988873 233 46777776
Q ss_pred CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 455 AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDG---TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 455 g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+.....+ .........+|+ |+| +.|+..+.++ .|.+||+.+++.. .+. +........|+|||+.++..
T Consensus 325 ~g~~~~lt~~g~~~~~~~~S--pDG---~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt--~~~~~~~p~~spdG~~i~~~ 396 (433)
T PRK04922 325 GGSAERLTFQGNYNARASVS--PDG---KKIAMVHGSGGQYRIAVMDLSTGSVR-TLT--PGSLDESPSFAPNGSMVLYA 396 (433)
T ss_pred CCCeEEeecCCCCccCEEEC--CCC---CEEEEEECCCCceeEEEEECCCCCeE-ECC--CCCCCCCceECCCCCEEEEE
Confidence 4333333 233445578999 899 7777655332 6999999777654 444 22345567999999988776
Q ss_pred cCC---CcEEEEEcCCC
Q psy10778 531 NTE---GLVIIWESSSH 544 (556)
Q Consensus 531 s~D---g~V~vwdl~~~ 544 (556)
+.+ +.|.++++..+
T Consensus 397 s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 397 TREGGRGVLAAVSTDGR 413 (433)
T ss_pred EecCCceEEEEEECCCC
Confidence 653 45778888553
|
|
| >KOG1240|consensus | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-12 Score=138.32 Aligned_cols=217 Identities=13% Similarity=0.144 Sum_probs=158.6
Q ss_pred CCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
.|...|..++.++.. .++++||.||+|++|+.......+ ...+...++.--..++.++..++.++.+|.|+.||.|+
T Consensus 1046 Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~--~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~ 1123 (1431)
T KOG1240|consen 1046 EHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEG--GSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVR 1123 (1431)
T ss_pred hccccccceeecCCCCceEEEecCCceEEEeeehhhhcCc--ceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEE
Confidence 688888888888655 999999999999999987542221 11133344444678899999999999999999999999
Q ss_pred EEeCCCC-------eEEEEeCCCCCCCCeeEE-EEeCC-CC-eEEEEeecCcCCCCeEEEEEeCC-cEEEEee---cCCC
Q psy10778 401 LWDINTI-------GYIREIPCVDPNTPVSHV-TMSET-NG-EIASVLQTTKTGGSILRLHTINA-QLITSLA---SELR 466 (556)
Q Consensus 401 iwdl~~~-------~~v~~l~~~h~~~~V~~l-~~sp~-~~-~i~s~s~~~~~~d~~I~iwdi~g-~~i~~~~---~~~~ 466 (556)
+.++... ...+.... +..+.+.++ ++... .. .++.+. ..+.|..||++. .-+.+++ ..+.
T Consensus 1124 ~~~id~~~~~~~~~~~~ri~n~-~~~g~vv~m~a~~~~~~S~~lvy~T-----~~~~iv~~D~r~~~~~w~lk~~~~hG~ 1197 (1431)
T KOG1240|consen 1124 VLRIDHYNVSKRVATQVRIPNL-KKDGVVVSMHAFTAIVQSHVLVYAT-----DLSRIVSWDTRMRHDAWRLKNQLRHGL 1197 (1431)
T ss_pred EEEccccccccceeeeeecccc-cCCCceEEeecccccccceeEEEEE-----eccceEEecchhhhhHHhhhcCccccc
Confidence 9998762 22233332 213333333 33332 23 556665 678999999973 2233332 4688
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC---CEEEEE-c-CCCcEEEEEc
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS---QHLYAS-N-TEGLVIIWES 541 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg---~~l~sg-s-~Dg~V~vwdl 541 (556)
|++++.+ |.+ ++++.|+..|.+.+||++-+.++......+..+|+.+..+|-. ...+++ + ..+.|.+|++
T Consensus 1198 vTSi~id--p~~---~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~ 1272 (1431)
T KOG1240|consen 1198 VTSIVID--PWC---NWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNM 1272 (1431)
T ss_pred eeEEEec--CCc---eEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeec
Confidence 9999999 888 8999999999999999999999999887677899999888743 344444 4 5788999999
Q ss_pred CCCCCcCeee
Q psy10778 542 SSHNRTPKFL 551 (556)
Q Consensus 542 ~~~~~~~~~~ 551 (556)
.++.+...+-
T Consensus 1273 ~~g~~~~vl~ 1282 (1431)
T KOG1240|consen 1273 ETGLRQTVLW 1282 (1431)
T ss_pred ccCcceEEEE
Confidence 9987765554
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=2.3e-11 Score=118.11 Aligned_cols=225 Identities=15% Similarity=0.208 Sum_probs=159.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC--CcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS--GNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D--g~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|+.|+.||. +++..+..... .-.......|.-+-|+. .++|..+.+ ..+++++.+.. ..++.+
T Consensus 19 ~lsvGs~~Gy-k~~~~~~~~k~-~~~~~~~~~IvEmLFSS--SLvaiV~~~qpr~Lkv~~~Kk~---------~~ICe~- 84 (391)
T KOG2110|consen 19 LLSVGSKDGY-KIFSCSPFEKC-FSKDTEGVSIVEMLFSS--SLVAIVSIKQPRKLKVVHFKKK---------TTICEI- 84 (391)
T ss_pred EEEccCCCce-eEEecCchHHh-hcccCCCeEEEEeeccc--ceeEEEecCCCceEEEEEcccC---------ceEEEE-
Confidence 7778888875 45554432110 00001223444555554 466665544 34777777654 112222
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV--DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
....+|.++.++. +.|+..-++. |.|||+++.+.+.++... + ...+.+++.++.+.+++.-+.. ..|.|.+
T Consensus 85 ~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n-~~gl~AlS~n~~n~ylAyp~s~---t~GdV~l 157 (391)
T KOG2110|consen 85 FFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPN-PKGLCALSPNNANCYLAYPGST---TSGDVVL 157 (391)
T ss_pred ecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCC-ccceEeeccCCCCceEEecCCC---CCceEEE
Confidence 2456788888864 4666665554 999999999999887651 3 3456666666667788865432 5789999
Q ss_pred EEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCe-EEEEeCCCCeEEEEecCCC-CCCeEEEEEecCCCE
Q psy10778 451 HTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGT-IQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQH 526 (556)
Q Consensus 451 wdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~ 526 (556)
||+. -+.+..+ .|.+.+.+++|+ ++| .+|||+++.|+ |||+.+.+|+.+.+++.|- ...|.+++|++++++
T Consensus 158 ~d~~nl~~v~~I~aH~~~lAalafs--~~G---~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~ 232 (391)
T KOG2110|consen 158 FDTINLQPVNTINAHKGPLAALAFS--PDG---TLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQF 232 (391)
T ss_pred EEcccceeeeEEEecCCceeEEEEC--CCC---CEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCe
Confidence 9986 5666665 589999999999 999 99999999987 7899999999999998633 466899999999999
Q ss_pred EEEEcCCCcEEEEEcCCCC
Q psy10778 527 LYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 527 l~sgs~Dg~V~vwdl~~~~ 545 (556)
|++.+..++|+|+.+++..
T Consensus 233 L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 233 LAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEecCCCeEEEEEecccc
Confidence 9999999999999998743
|
|
| >KOG1445|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=6.4e-13 Score=135.98 Aligned_cols=191 Identities=11% Similarity=0.072 Sum_probs=139.4
Q ss_pred eEEeccCCCeEEEEeCCCCCC-------cceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELPA-------TPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-------~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
-||.++.||.|++|.+..+.. ...+. .|...|+.+.|+|- .+.|++++.|.+|++||+... +
T Consensus 642 rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt-~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~---------~ 711 (1012)
T KOG1445|consen 642 RLAVATDDGQINLWRLTANGLPENEMTPEKILT-IHGEKITSLRFHPLAADVLAVASYDSTIELWDLANA---------K 711 (1012)
T ss_pred HeeecccCceEEEEEeccCCCCcccCCcceeee-cccceEEEEEecchhhhHhhhhhccceeeeeehhhh---------h
Confidence 589999999999999864422 22333 79999999999984 568999999999999999987 5
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
....+.+|.+.|.+++|||+|+.+++.++||++++|..++++ .++.-+++- ...--.|.|.-+|+++++.+-+.. ..
T Consensus 712 ~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpv-gtRgARi~wacdgr~viv~Gfdk~-Se 789 (1012)
T KOG1445|consen 712 LYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPV-GTRGARILWACDGRIVIVVGFDKS-SE 789 (1012)
T ss_pred hhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCc-cCcceeEEEEecCcEEEEeccccc-ch
Confidence 567899999999999999999999999999999999988764 344433312 334456778888888877763221 44
Q ss_pred CeEEEEEeC---CcEEEEeecCC--CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC
Q psy10778 446 SILRLHTIN---AQLITSLASEL--RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL 501 (556)
Q Consensus 446 ~~I~iwdi~---g~~i~~~~~~~--~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~ 501 (556)
.+|.+||.. +..+.+..... .+.--.+. +|. .-++++|-.|..|.+|.+-..
T Consensus 790 RQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD--~Ds--~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 790 RQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYD--YDS--NVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred hhhhhhhhhhccCCcceeeeecccCcccccccc--CCC--ceEEEecCCCceEEEEEecCC
Confidence 678888874 45554442221 11111222 333 157888999999999987443
|
|
| >KOG2110|consensus | Back alignment and domain information |
|---|
Probab=99.45 E-value=1e-10 Score=113.59 Aligned_cols=224 Identities=13% Similarity=0.199 Sum_probs=163.2
Q ss_pred eEEeccCC--CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-
Q psy10778 295 MICWNECD--NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL- 371 (556)
Q Consensus 295 ~l~~gs~D--g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l- 371 (556)
++|..+.+ ..+++.+.+.+..+..+. ....|.++.++. ++|+++-.+ .|+|||+... +.+.++
T Consensus 58 LvaiV~~~qpr~Lkv~~~Kk~~~ICe~~--fpt~IL~VrmNr--~RLvV~Lee-~IyIydI~~M---------klLhTI~ 123 (391)
T KOG2110|consen 58 LVAIVSIKQPRKLKVVHFKKKTTICEIF--FPTSILAVRMNR--KRLVVCLEE-SIYIYDIKDM---------KLLHTIE 123 (391)
T ss_pred eeEEEecCCCceEEEEEcccCceEEEEe--cCCceEEEEEcc--ceEEEEEcc-cEEEEecccc---------eeehhhh
Confidence 44444433 358888888766665554 346789998875 456666654 4999999976 444444
Q ss_pred --eCCCccEEEEEEccCCCEEEEE--cCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 372 --LGHSACVTDLYLCAGFSVAVSS--SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 372 --~~h~~~V~~l~~s~~~~~l~sg--s~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
..+...+.+++.+.++.+++-- ...|.|.+||+.+.+.+..+.. | .+++.+++|+++|..||+++. .+..
T Consensus 124 t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~a-H-~~~lAalafs~~G~llATASe----KGTV 197 (391)
T KOG2110|consen 124 TTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINA-H-KGPLAALAFSPDGTLLATASE----KGTV 197 (391)
T ss_pred ccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEe-c-CCceeEEEECCCCCEEEEecc----CceE
Confidence 3466678788888777787753 3469999999999999999999 9 999999999999999999994 4456
Q ss_pred EEEEEeC-CcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe---------------------
Q psy10778 448 LRLHTIN-AQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--------------------- 502 (556)
Q Consensus 448 I~iwdi~-g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--------------------- 502 (556)
||++.+. |+.+.++.. ...|.+++|+ +++ .+|++.+..++|+++.+....
T Consensus 198 IRVf~v~~G~kl~eFRRG~~~~~IySL~Fs--~ds---~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~ 272 (391)
T KOG2110|consen 198 IRVFSVPEGQKLYEFRRGTYPVSIYSLSFS--PDS---QFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAA 272 (391)
T ss_pred EEEEEcCCccEeeeeeCCceeeEEEEEEEC--CCC---CeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhh
Confidence 8999996 898888853 4578999999 888 899999999999999772110
Q ss_pred ----------------EEEEecCCCCC--CeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 503 ----------------HLLTLNTNVAL--PVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 503 ----------------~~~~~~~~h~~--~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
..........+ .+..+.-.+...++..++.||.++.|.++-
T Consensus 273 ~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~ 331 (391)
T KOG2110|consen 273 TSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP 331 (391)
T ss_pred hhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence 00011100011 223333234678899999999999999865
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-11 Score=115.22 Aligned_cols=152 Identities=18% Similarity=0.259 Sum_probs=113.4
Q ss_pred EEEEEccCCCEEEEEcC----------CCcEEEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 379 TDLYLCAGFSVAVSSSE----------DGTCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~----------Dg~I~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
..+.|+++|+.|+.-.. -|...+|.++. ...+..+.... .++|.+++|+|+|..+++.... .+..
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~-~~~I~~~~WsP~g~~favi~g~---~~~~ 84 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKK-EGPIHDVAWSPNGNEFAVIYGS---MPAK 84 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccC-CCceEEEEECcCCCEEEEEEcc---CCcc
Confidence 35788998886554222 13355555532 23344443312 4679999999999998766421 4569
Q ss_pred EEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 448 I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
|.+||++++.+..+. ...++.+.|+ |+| ++|++|+. .|.|.+||+.+.+.+.... | ..++.++|+|||
T Consensus 85 v~lyd~~~~~i~~~~-~~~~n~i~ws--P~G---~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~-~~~t~~~WsPdG 155 (194)
T PF08662_consen 85 VTLYDVKGKKIFSFG-TQPRNTISWS--PDG---RFLVLAGFGNLNGDLEFWDVRKKKKISTFE--H-SDATDVEWSPDG 155 (194)
T ss_pred cEEEcCcccEeEeec-CCCceEEEEC--CCC---CEEEEEEccCCCcEEEEEECCCCEEeeccc--c-CcEEEEEEcCCC
Confidence 999999988888875 4677899999 999 88888764 4779999999999888886 3 357899999999
Q ss_pred CEEEEEcC------CCcEEEEEcCC
Q psy10778 525 QHLYASNT------EGLVIIWESSS 543 (556)
Q Consensus 525 ~~l~sgs~------Dg~V~vwdl~~ 543 (556)
+++++++. |..++||+...
T Consensus 156 r~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 156 RYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred CEEEEEEeccceeccccEEEEEecC
Confidence 99998874 78899999865
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.8e-11 Score=126.33 Aligned_cols=213 Identities=11% Similarity=0.086 Sum_probs=140.3
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
...|.++|........ +. .+...+.+.+|+|||+.|+.++.+ ..|.+||+.++ + ...+....+.+
T Consensus 175 ~~~L~~~D~dG~~~~~-l~-~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g---------~-~~~l~~~~g~~ 242 (427)
T PRK02889 175 RYQLQISDADGQNAQS-AL-SSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATG---------R-RRVVANFKGSN 242 (427)
T ss_pred ccEEEEECCCCCCceE-ec-cCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCC---------C-EEEeecCCCCc
Confidence 3467777775433332 32 567789999999999999887643 35899998765 1 12334444566
Q ss_pred EEEEEccCCCEEE-EEcCCCcEEEEe--CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe--
Q psy10778 379 TDLYLCAGFSVAV-SSSEDGTCLLWD--INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI-- 453 (556)
Q Consensus 379 ~~l~~s~~~~~l~-sgs~Dg~I~iwd--l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi-- 453 (556)
.+.+|+|+|+.|+ +.+.+|...||. +..+. .+.+.. + ........|+|||+.|+..+. .++...+|.+
T Consensus 243 ~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~-~~~lt~-~-~~~~~~~~wSpDG~~l~f~s~----~~g~~~Iy~~~~ 315 (427)
T PRK02889 243 SAPAWSPDGRTLAVALSRDGNSQIYTVNADGSG-LRRLTQ-S-SGIDTEPFFSPDGRSIYFTSD----RGGAPQIYRMPA 315 (427)
T ss_pred cceEECCCCCEEEEEEccCCCceEEEEECCCCC-cEECCC-C-CCCCcCeEEcCCCCEEEEEec----CCCCcEEEEEEC
Confidence 7899999998776 567888877665 44443 556655 4 555677899999999987763 3445555544
Q ss_pred CCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 454 NAQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDG---TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 454 ~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
.+.....+. ........+|+ |+| +.|+..+.++ .|.+||+.+++.. .+... .......|+|||+.|+.
T Consensus 316 ~~g~~~~lt~~g~~~~~~~~S--pDG---~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~--~~~~~p~~spdg~~l~~ 387 (427)
T PRK02889 316 SGGAAQRVTFTGSYNTSPRIS--PDG---KLLAYISRVGGAFKLYVQDLATGQVT-ALTDT--TRDESPSFAPNGRYILY 387 (427)
T ss_pred CCCceEEEecCCCCcCceEEC--CCC---CEEEEEEccCCcEEEEEEECCCCCeE-EccCC--CCccCceECCCCCEEEE
Confidence 443333322 23344567899 899 7877666544 6999999877644 34312 33467899999998887
Q ss_pred EcCCC---cEEEEEc
Q psy10778 530 SNTEG---LVIIWES 541 (556)
Q Consensus 530 gs~Dg---~V~vwdl 541 (556)
++.++ .+.+.++
T Consensus 388 ~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 388 ATQQGGRSVLAAVSS 402 (427)
T ss_pred EEecCCCEEEEEEEC
Confidence 76543 3455555
|
|
| >KOG0642|consensus | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.2e-12 Score=133.12 Aligned_cols=215 Identities=12% Similarity=0.079 Sum_probs=159.1
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.|.+.|+++++.+....|++|+.||++++|++.. .........+++.++.+|.++|.|+++.+++..+.+|+.||+|+.
T Consensus 292 s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk-~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~ 370 (577)
T KOG0642|consen 292 SHDDCIRALAFHPSEPVLITASEDGTLKLWNLQK-AKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRC 370 (577)
T ss_pred cchhhhhhhhcCCCCCeEEEeccccchhhhhhcc-cCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeee
Confidence 6889999999999999999999999999999943 222333344788999999999999999999999999999999999
Q ss_pred EeCCCC----------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe---ecCCCeE
Q psy10778 402 WDINTI----------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL---ASELRIT 468 (556)
Q Consensus 402 wdl~~~----------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~---~~~~~i~ 468 (556)
|++... .....+.+ | ...|..+++|+....|++++ .||++++|+..+....++ ...+...
T Consensus 371 w~~p~n~dp~ds~dp~vl~~~l~G-h-tdavw~l~~s~~~~~Llscs-----~DgTvr~w~~~~~~~~~f~~~~e~g~Pl 443 (577)
T KOG0642|consen 371 WNLPPNQDPDDSYDPSVLSGTLLG-H-TDAVWLLALSSTKDRLLSCS-----SDGTVRLWEPTEESPCTFGEPKEHGYPL 443 (577)
T ss_pred eccCCCCCcccccCcchhccceec-c-ccceeeeeecccccceeeec-----CCceEEeeccCCcCccccCCccccCCcc
Confidence 965421 12345677 8 89999999999999999998 899999999874333333 2334556
Q ss_pred EEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
++.+-. ... .+.++...-+.-.+.++.....+..+.. .....+..+.++|.+.+.+++.+|+.|+++|..
T Consensus 444 svd~~s--s~~--a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 444 SVDRTS--SRP--AHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred eEeecc--chh--HhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccc
Confidence 666651 110 1222333333334444444444444432 112457788999999999999999999999999
Q ss_pred CCCCcC
Q psy10778 543 SHNRTP 548 (556)
Q Consensus 543 ~~~~~~ 548 (556)
+++.+.
T Consensus 520 ~~~~l~ 525 (577)
T KOG0642|consen 520 TGKILH 525 (577)
T ss_pred ccccch
Confidence 876543
|
|
| >KOG4227|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=116.94 Aligned_cols=228 Identities=13% Similarity=0.069 Sum_probs=162.1
Q ss_pred ceEEeccCCCeEEEEeCC------CCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 294 GMICWNECDNLIRLKMSK------ELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~------~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.+|++|+.|..+++|+.+ +.+.+.+....|.+.|-|++|....+.+++|..+++|...|+.+. +.
T Consensus 69 ~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~---------qs 139 (609)
T KOG4227|consen 69 RFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETK---------QS 139 (609)
T ss_pred eEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccc---------ee
Confidence 389999999999999975 334555555567799999999999999999999999999999875 22
Q ss_pred CeEe--eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 368 PTIL--LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+... ....+.|..+..+|..+.+++.+.+|.|.+||.+... .+ ..+.. . ......+.|+|....++....
T Consensus 140 i~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN-~-~~~F~t~~F~P~~P~Li~~~~--- 214 (609)
T KOG4227|consen 140 IYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPAN-S-GKNFYTAEFHPETPALILVNS--- 214 (609)
T ss_pred eeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecC-C-CccceeeeecCCCceeEEecc---
Confidence 2222 2234589999999999999999999999999998654 11 11122 2 456677888887654443332
Q ss_pred CCCCeEEEEEeCCc------------------------------EE---------------------EEeecC-------
Q psy10778 443 TGGSILRLHTINAQ------------------------------LI---------------------TSLASE------- 464 (556)
Q Consensus 443 ~~d~~I~iwdi~g~------------------------------~i---------------------~~~~~~------- 464 (556)
..+-+.+||++.+ .+ ....|.
T Consensus 215 -~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D~N~~GY~N~ 293 (609)
T KOG4227|consen 215 -ETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCFVLKSDHNPNGYCNI 293 (609)
T ss_pred -ccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccceeEeccCCCCcceee
Confidence 4455566665311 00 000111
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----------C-------------eEEEEecCCCCCCeEEEEEe
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----------L-------------AHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----------~-------------~~~~~~~~~h~~~V~~l~~s 521 (556)
..+.+++|. .+ .-+++|+.+-.|++|.+.. | +.+..+. +|.+-+..+.|+
T Consensus 294 ~T~KS~~F~--~D----~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLr-GHRSv~NQVRF~ 366 (609)
T KOG4227|consen 294 KTIKSMTFI--DD----YTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLR-GHRSVPNQVRFS 366 (609)
T ss_pred eeeeeeeee--cc----eeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEe-cccccccceeec
Confidence 134556665 33 5699999999999998731 1 1223344 888999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCC
Q psy10778 522 CDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|....|++.+....+++|.-..
T Consensus 367 ~H~~~l~SSGVE~~~KlWS~~r 388 (609)
T KOG4227|consen 367 QHNNLLVSSGVENSFKLWSDHR 388 (609)
T ss_pred CCcceEeccchhhheecccccc
Confidence 9999999999999999997543
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.40 E-value=4.1e-11 Score=117.14 Aligned_cols=206 Identities=17% Similarity=0.169 Sum_probs=158.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCC--CcEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSED--GTCL 400 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~D--g~I~ 400 (556)
..+|..++.. | ..|++|-.+|.+.+|....+.... .++..+..+ ..+..+.-++... ++++|+.. ..+.
T Consensus 105 ~~~I~gl~~~-d-g~Litc~~sG~l~~~~~k~~d~hs-----s~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lk 176 (412)
T KOG3881|consen 105 TKSIKGLKLA-D-GTLITCVSSGNLQVRHDKSGDLHS-----SKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELK 176 (412)
T ss_pred cccccchhhc-C-CEEEEEecCCcEEEEeccCCcccc-----ccceeeecC-CceeeeccCCCCCceEecCchhccccee
Confidence 4456555543 3 478888889999999988552111 233344444 4566666666554 56669988 8999
Q ss_pred EEeCCCCeEEEEeCCCC-------CCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC--CcEEEEee-cCCCeE
Q psy10778 401 LWDINTIGYIREIPCVD-------PNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN--AQLITSLA-SELRIT 468 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h-------~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~-~~~~i~ 468 (556)
|||+.+.+.+.+-+.+. ..-.++.+.|-+. ...+|+++ .-+.+++||.+ .+++..+. .+.++.
T Consensus 177 iwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T-----~~hqvR~YDt~~qRRPV~~fd~~E~~is 251 (412)
T KOG3881|consen 177 IWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATIT-----RYHQVRLYDTRHQRRPVAQFDFLENPIS 251 (412)
T ss_pred eeecccceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEe-----cceeEEEecCcccCcceeEeccccCcce
Confidence 99999886665443311 0235678888887 78999998 89999999997 46777775 467899
Q ss_pred EEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT-LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
++... |.| +.+++|...|.+..+|.+.++.+.. +. +..+.|+++..+|.++++++++-|..|+|+|+++.+.+
T Consensus 252 ~~~l~--p~g---n~Iy~gn~~g~l~~FD~r~~kl~g~~~k-g~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll 325 (412)
T KOG3881|consen 252 STGLT--PSG---NFIYTGNTKGQLAKFDLRGGKLLGCGLK-GITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLL 325 (412)
T ss_pred eeeec--CCC---cEEEEecccchhheecccCceeeccccC-CccCCcceEEEcCCCceEEeeccceeEEEeecccchhh
Confidence 99998 899 9999999999999999999998877 55 78899999999999999999999999999999995554
Q ss_pred C
Q psy10778 548 P 548 (556)
Q Consensus 548 ~ 548 (556)
.
T Consensus 326 ~ 326 (412)
T KOG3881|consen 326 H 326 (412)
T ss_pred h
Confidence 3
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.39 E-value=1e-10 Score=124.79 Aligned_cols=232 Identities=15% Similarity=0.173 Sum_probs=155.3
Q ss_pred cceEEeccCCCeEEEEeCCC---CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 293 AGMICWNECDNLIRLKMSKE---LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~---~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
..++|.|-.||.|.+|.--. .......-.=|.+.|++++|+++|.+|.+|+..|.+.+|.+.++ + .+
T Consensus 217 ~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~---------~-kq 286 (792)
T KOG1963|consen 217 ERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETG---------K-KQ 286 (792)
T ss_pred cceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCC---------C-cc
Confidence 34899999999999996543 22233333357889999999999999999999999999999986 2 35
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC--C-------CCCCeeEEEEeCCCCeEEEEeec
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV--D-------PNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~--h-------~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
-|..-.++|..+.++||+.+.+...+|..|.+-...+.....++.++ . +.+-.+.++++|..+.++..+
T Consensus 287 fLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~-- 364 (792)
T KOG1963|consen 287 FLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNG-- 364 (792)
T ss_pred cccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecC--
Confidence 56667789999999999999999999999999887655443333320 0 012234455555444444333
Q ss_pred CcCCCCe---------------------------------------------------------------EEEEEeCCc-
Q psy10778 441 TKTGGSI---------------------------------------------------------------LRLHTINAQ- 456 (556)
Q Consensus 441 ~~~~d~~---------------------------------------------------------------I~iwdi~g~- 456 (556)
..+. +++|..++.
T Consensus 365 ---~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~ 441 (792)
T KOG1963|consen 365 ---HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNS 441 (792)
T ss_pred ---CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcCCc
Confidence 3333 344443311
Q ss_pred ----EEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC------Ce---EEEEecCCCCCCeEEEEEe
Q psy10778 457 ----LITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK------LA---HLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 457 ----~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~------~~---~~~~~~~~h~~~V~~l~~s 521 (556)
+...+ .|+..+...++.+.+.. ...++++.||.+++|-+.. .. ....+..-|..++++++|+
T Consensus 442 kt~~L~T~I~~PH~~~~vat~~~~~~rs---~~~vta~~dg~~KiW~~~~~~n~~k~~s~W~c~~i~sy~k~~i~a~~fs 518 (792)
T KOG1963|consen 442 KTFILNTKINNPHGNAFVATIFLNPTRS---VRCVTASVDGDFKIWVFTDDSNIYKKSSNWTCKAIGSYHKTPITALCFS 518 (792)
T ss_pred ceeEEEEEEecCCCceeEEEEEecCccc---ceeEEeccCCeEEEEEEecccccCcCccceEEeeeeccccCcccchhhc
Confidence 11111 24444445555532222 3788999999999998722 11 1112221367899999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCC
Q psy10778 522 CDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.||..|+ .+.|+.|.+||..+
T Consensus 519 ~dGslla-~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 519 QDGSLLA-VSFDDTITIWDYDT 539 (792)
T ss_pred CCCcEEE-EecCCEEEEecCCC
Confidence 9996655 56688999999988
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.3e-11 Score=113.05 Aligned_cols=131 Identities=11% Similarity=0.109 Sum_probs=101.5
Q ss_pred cceEcCCCCCceEEEEEcCCCCEEEEE--eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEE
Q psy10778 316 TPVIRPPLGATIATATTAPDCHTLWLG--LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393 (556)
Q Consensus 316 ~~~~~~~h~~~V~~i~~s~dg~~l~tg--s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg 393 (556)
...+.....++|.+++|+|+|+.+|+. ..++.|.+||++. +.+..+ +...+..+.|+|+|+++++|
T Consensus 51 ~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd~~~----------~~i~~~--~~~~~n~i~wsP~G~~l~~~ 118 (194)
T PF08662_consen 51 VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYDVKG----------KKIFSF--GTQPRNTISWSPDGRFLVLA 118 (194)
T ss_pred cceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEcCcc----------cEeEee--cCCCceEEEECCCCCEEEEE
Confidence 344444456679999999999987654 4667999999963 233333 45678899999999999988
Q ss_pred cC---CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeec-CcCCCCeEEEEEeCCcEEEEee
Q psy10778 394 SE---DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQT-TKTGGSILRLHTINAQLITSLA 462 (556)
Q Consensus 394 s~---Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~-~~~~d~~I~iwdi~g~~i~~~~ 462 (556)
+. .|.+.+||+++.+.+.+... ..++.++|+|+|++++++... ....|+.++||+..|+++....
T Consensus 119 g~~n~~G~l~~wd~~~~~~i~~~~~----~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 119 GFGNLNGDLEFWDVRKKKKISTFEH----SDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EccCCCcEEEEEECCCCEEeecccc----CcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 64 46799999998888877764 347899999999999998742 1225788999999999887653
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.38 E-value=3.5e-11 Score=127.52 Aligned_cols=194 Identities=13% Similarity=0.096 Sum_probs=135.6
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
+..|++|++.+++...... ..+...+++|+|||+.|+.++ .+|.+.||.++... .....+..+...+..
T Consensus 227 ~~~i~i~dl~tg~~~~l~~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~--------~~~~~lt~~~~~~~~ 296 (429)
T PRK01742 227 KSQLVVHDLRSGARKVVAS--FRGHNGAPAFSPDGSRLAFASSKDGVLNIYVMGANG--------GTPSQLTSGAGNNTE 296 (429)
T ss_pred CcEEEEEeCCCCceEEEec--CCCccCceeECCCCCEEEEEEecCCcEEEEEEECCC--------CCeEeeccCCCCcCC
Confidence 3579999998775443322 222344789999999988765 68888777665321 123456677778889
Q ss_pred EEEccCCCEEEEE-cCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcE
Q psy10778 381 LYLCAGFSVAVSS-SEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQL 457 (556)
Q Consensus 381 l~~s~~~~~l~sg-s~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~ 457 (556)
..|+|+|+.|+.+ ..+|...||++... .....+ . + .. ...+|+|+|+.|+.++ .+ .+.+||+. |+.
T Consensus 297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l-~-~-~~--~~~~~SpDG~~ia~~~-----~~-~i~~~Dl~~g~~ 365 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLV-G-G-RG--YSAQISADGKTLVMIN-----GD-NVVKQDLTSGST 365 (429)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCeEEe-c-C-CC--CCccCCCCCCEEEEEc-----CC-CEEEEECCCCCe
Confidence 9999999976654 46788888876532 223333 3 3 33 4578999999999887 44 46668987 443
Q ss_pred EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC--CCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG--YKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 458 i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~--~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
. .+.......++.|+ |+| ++|+.++.+|.+.+|++ .+++..+.+. .|.+.+...+|+|-
T Consensus 366 ~-~lt~~~~~~~~~~s--PdG---~~i~~~s~~g~~~~l~~~~~~G~~~~~l~-~~~g~~~~p~wsp~ 426 (429)
T PRK01742 366 E-VLSSTFLDESPSIS--PNG---IMIIYSSTQGLGKVLQLVSADGRFKARLP-GSDGQVKFPAWSPY 426 (429)
T ss_pred E-EecCCCCCCCceEC--CCC---CEEEEEEcCCCceEEEEEECCCCceEEcc-CCCCCCCCcccCCC
Confidence 3 22222234567899 999 89999988998888875 3678888887 67788899999984
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=7e-12 Score=126.67 Aligned_cols=216 Identities=15% Similarity=0.188 Sum_probs=149.2
Q ss_pred EEeccCCCeEEEEeCCCCCCcceEcC---CCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 296 ICWNECDNLIRLKMSKELPATPVIRP---PLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~~~~~~~~~---~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
+..|...|.+.+.+....+....+.. .....|+|+.|-|.+ ..++++-.+|.+++||.....
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~-------------- 253 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVC-------------- 253 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccc--------------
Confidence 55677888888887765332222211 235789999999854 456666789999999874320
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
+-+.+ +-...+++..+.....-+ ..+..++..+.. - .+.|..++|+|||+++|+.+ .||.++||
T Consensus 254 -~~t~p--~~~~~k~~~~f~i~t~ks------k~~rNPv~~w~~-~-~g~in~f~FS~DG~~LA~VS-----qDGfLRvF 317 (636)
T KOG2394|consen 254 -GATAP--SYQALKDGDQFAILTSKS------KKTRNPVARWHI-G-EGSINEFAFSPDGKYLATVS-----QDGFLRIF 317 (636)
T ss_pred -cCCCC--cccccCCCCeeEEeeeec------cccCCccceeEe-c-cccccceeEcCCCceEEEEe-----cCceEEEe
Confidence 00000 011122333333221110 011133333332 2 56899999999999999999 99999999
Q ss_pred EeCCc-EEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec-------
Q psy10778 452 TINAQ-LITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC------- 522 (556)
Q Consensus 452 di~g~-~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~------- 522 (556)
|...+ ++..++. =+...|++|| ||| ++|++|++|..|.||.+...+.+..=. +|.+.|..++|.|
T Consensus 318 ~fdt~eLlg~mkSYFGGLLCvcWS--PDG---KyIvtGGEDDLVtVwSf~erRVVARGq-GHkSWVs~VaFDpytt~~ee 391 (636)
T KOG2394|consen 318 DFDTQELLGVMKSYFGGLLCVCWS--PDG---KYIVTGGEDDLVTVWSFEERRVVARGQ-GHKSWVSVVAFDPYTTSTEE 391 (636)
T ss_pred eccHHHHHHHHHhhccceEEEEEc--CCc---cEEEecCCcceEEEEEeccceEEEecc-ccccceeeEeeccccccccc
Confidence 99844 4433332 4789999999 999 999999999999999999999998887 8999999999983
Q ss_pred ------------------------C----C-------------CEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 523 ------------------------D----S-------------QHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 523 ------------------------d----g-------------~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+ + -.+.+.+.|-.+++||+......
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~ 457 (636)
T KOG2394|consen 392 WNNFSGMDSTFSDVAHDFEIRANGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLV 457 (636)
T ss_pred ccccccccccccchhcccccccCCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhcc
Confidence 0 0 14678888999999999874443
|
|
| >KOG2394|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=5.7e-12 Score=127.31 Aligned_cols=171 Identities=11% Similarity=0.096 Sum_probs=120.5
Q ss_pred CCCcceeEeeccCCeEeeecce-eeeeeeccCcccccccccccccCC--cceEEeccCCCeEEEEeCCCC-----CC---
Q psy10778 247 RNPVSKLVPLRTNDVFGLAKFT-TLLHSYHKDKNTNLISSLNVIGAG--AGMICWNECDNLIRLKMSKEL-----PA--- 315 (556)
Q Consensus 247 ~~~i~~l~~l~~~~v~~~~~~~-~~~~~~~~~k~~~~~~~~~~~~~~--~~~l~~gs~Dg~I~lw~~~~~-----~~--- 315 (556)
...+..++.+.+|+++.+.+-. .+..-|..+..+..-+.+.+.|.. ..++..+..+|.+++++.+-. ..
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 3455667778888877654432 111111111111111222222211 226667788888888865311 00
Q ss_pred --------------------cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC
Q psy10778 316 --------------------TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS 375 (556)
Q Consensus 316 --------------------~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~ 375 (556)
+..+. --.+.|...+|+|||++||+.+.||.+||++..+. +.+..++..-
T Consensus 263 ~k~~~~f~i~t~ksk~~rNPv~~w~-~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~---------eLlg~mkSYF 332 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKKTRNPVARWH-IGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQ---------ELLGVMKSYF 332 (636)
T ss_pred cCCCCeeEEeeeeccccCCccceeE-eccccccceeEcCCCceEEEEecCceEEEeeccHH---------HHHHHHHhhc
Confidence 00111 11457889999999999999999999999999986 5667777788
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp 429 (556)
+...|++|||||++|++|++|-.|.||.+..++.+..=.+ | .++|+.|+|+|
T Consensus 333 GGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGqG-H-kSWVs~VaFDp 384 (636)
T KOG2394|consen 333 GGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQG-H-KSWVSVVAFDP 384 (636)
T ss_pred cceEEEEEcCCccEEEecCCcceEEEEEeccceEEEeccc-c-ccceeeEeecc
Confidence 8999999999999999999999999999999999999899 9 99999999984
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-11 Score=115.92 Aligned_cols=233 Identities=14% Similarity=0.145 Sum_probs=165.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++|+.+.- .+.+.|.++-+..+.+. .-+.|.-+.|..|..+++++ ..|+.|.+|++... +-...+..
T Consensus 22 yiAs~~~y-rlviRd~~tlq~~qlf~--cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp---------ew~ckIde 89 (447)
T KOG4497|consen 22 YIASLSRY-RLVIRDSETLQLHQLFL--CLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP---------EWYCKIDE 89 (447)
T ss_pred eeeeeeee-EEEEeccchhhHHHHHH--HHHHhhheeeeccceeeeeeeeccceEEEEEeecc---------eeEEEecc
Confidence 77766544 77788888776666554 25678889999988776665 68889999999865 44466777
Q ss_pred CCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-----------
Q psy10778 374 HSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT----------- 441 (556)
Q Consensus 374 h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~----------- 441 (556)
..+++..++|||+|+ +|.+..-|-.|.+|.+.+.+.. .++. +...+..++|+|+|++.+.++..+
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~-~~~~--pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~ 166 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGY-LLPH--PKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCK 166 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEeccceeE-Eecc--cccCceeEEECCCCceeeeeecccHHHHHHHHhhH
Confidence 888999999999996 5666677999999999975543 3332 256779999999999998887654
Q ss_pred --------------------cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 442 --------------------KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 442 --------------------~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
...++.+.+||.- .-.+......-.+..++|+ |.+ ++|++|+.|+.+|+.+--+
T Consensus 167 ~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~ws--P~~---qflavGsyD~~lrvlnh~t 241 (447)
T KOG4497|consen 167 AWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWS--PCN---QFLAVGSYDQMLRVLNHFT 241 (447)
T ss_pred HHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEec--ccc---ceEEeeccchhhhhhceee
Confidence 1144556666653 2222334455688999999 878 8999999999998854310
Q ss_pred Ce------------------------------------------------------------EEEEecC-----CCCCCe
Q psy10778 501 LA------------------------------------------------------------HLLTLNT-----NVALPV 515 (556)
Q Consensus 501 ~~------------------------------------------------------------~~~~~~~-----~h~~~V 515 (556)
.+ .+..+.. .....+
T Consensus 242 Wk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~ 321 (447)
T KOG4497|consen 242 WKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGA 321 (447)
T ss_pred eeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCccccc
Confidence 00 1111110 113456
Q ss_pred EEEEEecCCCEEEEEcCC--CcEEEEEcCCCCCc
Q psy10778 516 IAVTYSCDSQHLYASNTE--GLVIIWESSSHNRT 547 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~D--g~V~vwdl~~~~~~ 547 (556)
.-++|++|..++++-.+. ..+.+||+++.+..
T Consensus 322 g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~ 355 (447)
T KOG4497|consen 322 GKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH 355 (447)
T ss_pred ceeeecCCceEEeeecCCCCceEEEEechhhhhh
Confidence 778999999999886643 67999999885543
|
|
| >KOG0322|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.4e-12 Score=116.34 Aligned_cols=148 Identities=8% Similarity=0.051 Sum_probs=121.7
Q ss_pred cceEEeccCCCeEEEEeCCCCC----------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 293 AGMICWNECDNLIRLKMSKELP----------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~----------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
..+++.|.++|.+.+||+.++. ....+ ..|..+|.++.+.+.-..=++|+.+..+..|++..... ..
T Consensus 165 ~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~-ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~g--sl 241 (323)
T KOG0322|consen 165 TFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPN-ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTG--SL 241 (323)
T ss_pred eEEEEEeccCCeEEEEEccCCceeeccccccccccch-hhccCcceeeeechhhcCCcCCCccccceeeeeccccC--cc
Confidence 3488999999999999998762 22222 26899999999988766677888888999999876411 11
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.....+.--.-.|..+.+-||+++++|++.||.|+||+.++++.+..++- | .+.|++++|+|+.+.+|+++
T Consensus 242 ---q~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLky-H-sagvn~vAfspd~~lmAaas---- 312 (323)
T KOG0322|consen 242 ---QIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKY-H-SAGVNAVAFSPDCELMAAAS---- 312 (323)
T ss_pred ---cccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhh-h-hcceeEEEeCCCCchhhhcc----
Confidence 22233333445688899999999999999999999999999999999999 9 99999999999999999999
Q ss_pred CCCCeEEEEEe
Q psy10778 443 TGGSILRLHTI 453 (556)
Q Consensus 443 ~~d~~I~iwdi 453 (556)
.|++|.+|++
T Consensus 313 -kD~rISLWkL 322 (323)
T KOG0322|consen 313 -KDARISLWKL 322 (323)
T ss_pred -CCceEEeeec
Confidence 9999999986
|
|
| >KOG1963|consensus | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.8e-10 Score=122.96 Aligned_cols=139 Identities=19% Similarity=0.223 Sum_probs=108.1
Q ss_pred CCeEEEEeCCCCC---CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 302 DNLIRLKMSKELP---ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 302 Dg~I~lw~~~~~~---~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+..+.+|....+. ........|.-.++|.+++|+++++|+|..||.|.+|.--..... ......+.-|.++|
T Consensus 180 ~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~-----~~t~t~lHWH~~~V 254 (792)
T KOG1963|consen 180 MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDD-----SETCTLLHWHHDEV 254 (792)
T ss_pred eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccc-----cccceEEEeccccc
Confidence 3455667665532 111122257777999999999999999999999999975441111 12346788999999
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 379 TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.+++|+++|.+|.||+..|.+.+|.+.+++ .+-++. - .++|..+.++||+...+... .|+.|.+...
T Consensus 255 ~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfLPR-L-gs~I~~i~vS~ds~~~sl~~-----~DNqI~li~~ 321 (792)
T KOG1963|consen 255 NSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFLPR-L-GSPILHIVVSPDSDLYSLVL-----EDNQIHLIKA 321 (792)
T ss_pred ceeEEecCCceEeecccceEEEEEeecCCC-cccccc-c-CCeeEEEEEcCCCCeEEEEe-----cCceEEEEec
Confidence 999999999999999999999999999987 333343 3 78999999999999999988 8888888765
|
|
| >KOG1523|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=6.4e-11 Score=113.01 Aligned_cols=212 Identities=15% Similarity=0.119 Sum_probs=161.7
Q ss_pred eEEeccCCCeEEEEeCCCCC-C--cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELP-A--TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-~--~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.+|.+.....|.||...... . ...+. .|...|++++|+|..+.|++|+.|..-+||....+. ..++...+
T Consensus 24 ~iAv~~~~~evhiy~~~~~~~w~~~htls-~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~------~WkptlvL 96 (361)
T KOG1523|consen 24 QIAVSPNNHEVHIYSMLGADLWEPAHTLS-EHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG------TWKPTLVL 96 (361)
T ss_pred eEEeccCCceEEEEEecCCCCceeceehh-hhCcceeEEeecCCCCceeEccCCCCccccccCCCC------eeccceeE
Confidence 56677777788888776554 2 22332 799999999999999999999999999999984321 22556778
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE---EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI---REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
..+....+++.|+|..+.+++||....|.||-.+..+-- +.++.++ .+.|.++.|+|++-.+++|+ .|+..
T Consensus 97 lRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPi-rStv~sldWhpnnVLlaaGs-----~D~k~ 170 (361)
T KOG1523|consen 97 LRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPI-RSTVTSLDWHPNNVLLAAGS-----TDGKC 170 (361)
T ss_pred EEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCcc-ccceeeeeccCCcceecccc-----cCcce
Confidence 889999999999999999999999999999987754322 2233335 78899999999999999998 89999
Q ss_pred EEEEeC-------------------CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEe
Q psy10778 449 RLHTIN-------------------AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTL 507 (556)
Q Consensus 449 ~iwdi~-------------------g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~ 507 (556)
+++..- |+++.+. ...+.+..+.|+ |+| +.|+-.+.|+.+.+-|..... .+...
T Consensus 171 rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs--~sG---~~lawv~Hds~v~~~da~~p~~~v~~~ 245 (361)
T KOG1523|consen 171 RVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFS--PSG---NRLAWVGHDSTVSFVDAAGPSERVQSV 245 (361)
T ss_pred eEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeC--CCC---CEeeEecCCCceEEeecCCCchhccch
Confidence 998751 2233344 346789999999 899 899999999999999975543 34444
Q ss_pred cCCCCCCeEEEEEecCCC
Q psy10778 508 NTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~ 525 (556)
... .-+..++.|-.+..
T Consensus 246 ~~~-~lP~ls~~~ise~~ 262 (361)
T KOG1523|consen 246 ATA-QLPLLSVSWISENS 262 (361)
T ss_pred hhc-cCCceeeEeecCCc
Confidence 322 36677777765443
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.33 E-value=1.4e-12 Score=129.59 Aligned_cols=216 Identities=17% Similarity=0.138 Sum_probs=177.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.++.|+.-|.|..+|..++++...+. -...|..+.|-.+.+++|++-. .-+.|||-.. ..+..+..|
T Consensus 143 hlllgGrKGHlAa~Dw~t~~L~~Ei~--v~Etv~Dv~~LHneq~~AVAQK-~y~yvYD~~G----------tElHClk~~ 209 (545)
T KOG1272|consen 143 HLLLGGRKGHLAAFDWVTKKLHFEIN--VMETVRDVTFLHNEQFFAVAQK-KYVYVYDNNG----------TELHCLKRH 209 (545)
T ss_pred EEEecCCccceeeeecccceeeeeee--hhhhhhhhhhhcchHHHHhhhh-ceEEEecCCC----------cEEeehhhc
Confidence 78889999999999998887665553 3567889999988888888765 6888988654 223444444
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
..|..+.|-|.-=+|++++..|.++--|+.+|+.+..+.. . .+.+..++-+|-+..|-+|. ..|+|.+|..+
T Consensus 210 -~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t-~-~G~~~vm~qNP~NaVih~Gh-----snGtVSlWSP~ 281 (545)
T KOG1272|consen 210 -IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRT-G-AGRTDVMKQNPYNAVIHLGH-----SNGTVSLWSPN 281 (545)
T ss_pred -CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHc-c-CCccchhhcCCccceEEEcC-----CCceEEecCCC
Confidence 5788899999888999999999999999999999998877 5 78899999999999999998 89999999998
Q ss_pred -C-cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -A-QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g-~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
. .++..+.|.++|.++++. +.| ++++|.+.|..++|||++....+.++.. .-+...+++|..| +++++.
T Consensus 282 skePLvKiLcH~g~V~siAv~--~~G---~YMaTtG~Dr~~kIWDlR~~~ql~t~~t--p~~a~~ls~Sqkg--lLA~~~ 352 (545)
T KOG1272|consen 282 SKEPLVKILCHRGPVSSIAVD--RGG---RYMATTGLDRKVKIWDLRNFYQLHTYRT--PHPASNLSLSQKG--LLALSY 352 (545)
T ss_pred CcchHHHHHhcCCCcceEEEC--CCC---cEEeecccccceeEeeeccccccceeec--CCCcccccccccc--ceeeec
Confidence 3 345555789999999999 899 9999999999999999999888887763 4567788888665 455566
Q ss_pred CCcEEEEE
Q psy10778 533 EGLVIIWE 540 (556)
Q Consensus 533 Dg~V~vwd 540 (556)
...|.||.
T Consensus 353 G~~v~iw~ 360 (545)
T KOG1272|consen 353 GDHVQIWK 360 (545)
T ss_pred CCeeeeeh
Confidence 66899996
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.2e-10 Score=120.01 Aligned_cols=199 Identities=13% Similarity=0.112 Sum_probs=133.8
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCC--cEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSG--NILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
+.+..|.+|++.+++...... ..+.+...+|+|||+.|+.. +.+| .|.+||+.++ ....+..+..
T Consensus 220 ~g~~~i~i~dl~~G~~~~l~~--~~~~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg----------~~~~lt~~~~ 287 (429)
T PRK03629 220 SGRSALVIQTLANGAVRQVAS--FPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASG----------QIRQVTDGRS 287 (429)
T ss_pred CCCcEEEEEECCCCCeEEccC--CCCCcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCC----------CEEEccCCCC
Confidence 345679999998776444332 23345578999999988865 4455 4777787654 1234444556
Q ss_pred cEEEEEEccCCCEEEEEcCC-CcEEE--EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 377 CVTDLYLCAGFSVAVSSSED-GTCLL--WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~D-g~I~i--wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.+....|+|+|+.|+..+.+ |...+ +|+.+++. +.+.. . .......+|+|+|+.|+..+... ....|.+||+
T Consensus 288 ~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~-~-~~~~~~~~~SpDG~~Ia~~~~~~--g~~~I~~~dl 362 (429)
T PRK03629 288 NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITW-E-GSQNQDADVSSDGKFMVMVSSNG--GQQHIAKQDL 362 (429)
T ss_pred CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeec-C-CCCccCEEECCCCCEEEEEEccC--CCceEEEEEC
Confidence 67889999999988766653 44444 47766544 34433 3 44567789999999998876321 2346888998
Q ss_pred CCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCe---EEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 454 NAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGT---IQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 454 ~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~---I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
.+.....+..........|+ ||| +.|+.++.++. +.++++ +++....+. +|.+.+...+|+|
T Consensus 363 ~~g~~~~Lt~~~~~~~p~~S--pDG---~~i~~~s~~~~~~~l~~~~~-~G~~~~~l~-~~~~~~~~p~Wsp 427 (429)
T PRK03629 363 ATGGVQVLTDTFLDETPSIA--PNG---TMVIYSSSQGMGSVLNLVST-DGRFKARLP-ATDGQVKFPAWSP 427 (429)
T ss_pred CCCCeEEeCCCCCCCCceEC--CCC---CEEEEEEcCCCceEEEEEEC-CCCCeEECc-cCCCCcCCcccCC
Confidence 74434444333334567899 999 78888776654 677776 566677776 5778888899987
|
|
| >KOG0771|consensus | Back alignment and domain information |
|---|
Probab=99.31 E-value=2.9e-11 Score=119.31 Aligned_cols=180 Identities=15% Similarity=0.079 Sum_probs=131.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe--e
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL--L 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l--~ 372 (556)
.+++|+.||.+|+|+..+...+... ..|...|.++.|+|||+.|++-+.| ..+||+..++ .++... .
T Consensus 158 ~latgg~dg~lRv~~~Ps~~t~l~e-~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g---------~~~a~~t~~ 226 (398)
T KOG0771|consen 158 KLATGGTDGTLRVWEWPSMLTILEE-IAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTG---------AALARKTPF 226 (398)
T ss_pred EeeeccccceEEEEecCcchhhhhh-HhhcCccccceeCCCCcEEEEecCC-ceEEEEeccC---------chhhhcCCc
Confidence 8999999999999996654433333 2688999999999999999999999 9999999987 222222 2
Q ss_pred CCCccEEEEEEccCC-----CEEEEEcCCCcEEEEeCCCCe-----EEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 373 GHSACVTDLYLCAGF-----SVAVSSSEDGTCLLWDINTIG-----YIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~-----~~l~sgs~Dg~I~iwdl~~~~-----~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
+-......+.|+.+. .++++...-+.|+.||+.... ..+ .+.. ...|++++++++|++++.|+
T Consensus 227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~---~~siSsl~VS~dGkf~AlGT--- 300 (398)
T KOG0771|consen 227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKR---FKSISSLAVSDDGKFLALGT--- 300 (398)
T ss_pred ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhc---cCcceeEEEcCCCcEEEEec---
Confidence 233345566777666 233334445666666654321 122 2333 46799999999999999999
Q ss_pred cCCCCeEEEEEeC-CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 442 KTGGSILRLHTIN-AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
.+|.|.+++.. -+.+... .|...|+.+.|+ |+. +++++-+.+.+..+..+
T Consensus 301 --~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~--Pds---r~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 301 --MDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFS--PDS---RYLASVSSDNEAAVTKL 353 (398)
T ss_pred --cCCcEEEEEeceeeeeEeehhhheeeeeeEEEc--CCc---CcccccccCCceeEEEE
Confidence 89999999997 4444444 377899999999 887 78888888887777655
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.31 E-value=6.4e-10 Score=117.60 Aligned_cols=217 Identities=13% Similarity=0.098 Sum_probs=145.4
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
...|.++|.......... .+...+...+|+|||++|+.++.+ ..|++|++.++ + ...+..+...+
T Consensus 169 ~~~l~~~d~~g~~~~~l~--~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g---------~-~~~~~~~~~~~ 236 (417)
T TIGR02800 169 RYELQVADYDGANPQTIT--RSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATG---------Q-REKVASFPGMN 236 (417)
T ss_pred cceEEEEcCCCCCCEEee--cCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCC---------C-EEEeecCCCCc
Confidence 346778887654443333 456678899999999999987644 47899998764 1 13344455667
Q ss_pred EEEEEccCCCEEE-EEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC
Q psy10778 379 TDLYLCAGFSVAV-SSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA 455 (556)
Q Consensus 379 ~~l~~s~~~~~l~-sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g 455 (556)
.+++|+|+++.|+ +.+.++ .|.+||+.+++. ..+.. + .......+|+|+++.|+.++... ....|+++|+++
T Consensus 237 ~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~-~~l~~-~-~~~~~~~~~s~dg~~l~~~s~~~--g~~~iy~~d~~~ 311 (417)
T TIGR02800 237 GAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQL-TRLTN-G-PGIDTEPSWSPDGKSIAFTSDRG--GSPQIYMMDADG 311 (417)
T ss_pred cceEECCCCCEEEEEECCCCCccEEEEECCCCCE-EECCC-C-CCCCCCEEECCCCCEEEEEECCC--CCceEEEEECCC
Confidence 7899999998665 455554 588899987654 44444 4 45556789999999998776321 223688888874
Q ss_pred cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCC---eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 456 QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDG---TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 456 ~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg---~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
.....+ ..........|+ |+| ++++.++.++ .|.+||+.++.. ..+. . ........|+|||+.|+..+
T Consensus 312 ~~~~~l~~~~~~~~~~~~s--pdg---~~i~~~~~~~~~~~i~~~d~~~~~~-~~l~-~-~~~~~~p~~spdg~~l~~~~ 383 (417)
T TIGR02800 312 GEVRRLTFRGGYNASPSWS--PDG---DLIAFVHREGGGFNIAVMDLDGGGE-RVLT-D-TGLDESPSFAPNGRMILYAT 383 (417)
T ss_pred CCEEEeecCCCCccCeEEC--CCC---CEEEEEEccCCceEEEEEeCCCCCe-EEcc-C-CCCCCCceECCCCCEEEEEE
Confidence 333333 345567788999 888 7888777665 788999877543 3333 1 12345568999999888777
Q ss_pred CCC---cEEEEEcCC
Q psy10778 532 TEG---LVIIWESSS 543 (556)
Q Consensus 532 ~Dg---~V~vwdl~~ 543 (556)
.++ .+.+.+...
T Consensus 384 ~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 384 TRGGRGVLGLVSTDG 398 (417)
T ss_pred eCCCcEEEEEEECCC
Confidence 654 355555433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=2.2e-10 Score=116.87 Aligned_cols=197 Identities=11% Similarity=0.204 Sum_probs=154.6
Q ss_pred CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC
Q psy10778 337 HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV 416 (556)
Q Consensus 337 ~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~ 416 (556)
.-|++++....|+-++++.+ ..+..+....+.++++..++...+|++|+.+|.|-.||.+....+.++...
T Consensus 146 cDly~~gsg~evYRlNLEqG---------rfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~ 216 (703)
T KOG2321|consen 146 CDLYLVGSGSEVYRLNLEQG---------RFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAA 216 (703)
T ss_pred ccEEEeecCcceEEEEcccc---------ccccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecc
Confidence 33455555566777777766 556667777789999999999999999999999999999987666555430
Q ss_pred -----CC----CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec--CCCeEEEEEeeCCCCCcceEE
Q psy10778 417 -----DP----NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS--ELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 417 -----h~----~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l 484 (556)
|+ ...|+++.|+.+|-.+++|. ..|.+.+||++ .+++....| .-+|..+.|.+..++ +.+
T Consensus 217 ~~v~s~pg~~~~~svTal~F~d~gL~~aVGt-----s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q---~~v 288 (703)
T KOG2321|consen 217 SSVNSHPGGDAAPSVTALKFRDDGLHVAVGT-----STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQ---NKV 288 (703)
T ss_pred cccCCCccccccCcceEEEecCCceeEEeec-----cCCcEEEEEcccCCceeecccCCccceeeecccccCCC---ceE
Confidence 20 12499999999999999999 89999999998 566655555 468999999843223 556
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeecc
Q psy10778 485 VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
++.. ...++|||-.+|+....+. ....+..+++-|++..+.++-+++.+..|=++.-...|...++
T Consensus 289 ~S~D-k~~~kiWd~~~Gk~~asiE--pt~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~LGPaPrWCSf 354 (703)
T KOG2321|consen 289 VSMD-KRILKIWDECTGKPMASIE--PTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSLGPAPRWCSF 354 (703)
T ss_pred Eecc-hHHhhhcccccCCceeecc--ccCCcCceeeecCCceEEEecCCCcceeEEccccCCCchhhhH
Confidence 6554 5789999999999999997 4567999999999999999999999999988887666665543
|
|
| >KOG1272|consensus | Back alignment and domain information |
|---|
Probab=99.30 E-value=4.9e-12 Score=125.72 Aligned_cols=199 Identities=16% Similarity=0.211 Sum_probs=164.8
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 327 IATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
-..+.++.+|+.|+.|+.-|.|-.+|..++ .....+. -...|.++.|-.+.+++|++ ....+.|||-.
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~---------~L~~Ei~-v~Etv~Dv~~LHneq~~AVA-QK~y~yvYD~~- 199 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTK---------KLHFEIN-VMETVRDVTFLHNEQFFAVA-QKKYVYVYDNN- 199 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccc---------eeeeeee-hhhhhhhhhhhcchHHHHhh-hhceEEEecCC-
Confidence 457889999999999999999999999876 2222222 33567888888877777765 56789999954
Q ss_pred CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEE
Q psy10778 407 IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 407 ~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l 484 (556)
|..+..++. ...|..+.|-|..-.+++++ ..|.++--|+. |+++..+. ..+.+..++-+ |-. .++
T Consensus 200 GtElHClk~---~~~v~rLeFLPyHfLL~~~~-----~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qN--P~N---aVi 266 (545)
T KOG1272|consen 200 GTELHCLKR---HIRVARLEFLPYHFLLVAAS-----EAGFLKYQDVSTGKLVASIRTGAGRTDVMKQN--PYN---AVI 266 (545)
T ss_pred CcEEeehhh---cCchhhhcccchhheeeecc-----cCCceEEEeechhhhhHHHHccCCccchhhcC--Ccc---ceE
Confidence 888888887 48899999999877788887 88999999998 99988885 45677778777 655 689
Q ss_pred EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 485 VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
-+|..+|+|.+|.....+++..+. .|.++|.++++.++|++++|.+.|..++|||+++...+.++.
T Consensus 267 h~GhsnGtVSlWSP~skePLvKiL-cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~ 332 (545)
T KOG1272|consen 267 HLGHSNGTVSLWSPNSKEPLVKIL-CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYR 332 (545)
T ss_pred EEcCCCceEEecCCCCcchHHHHH-hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceee
Confidence 999999999999998888887776 799999999999999999999999999999999866554443
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=2e-09 Score=102.87 Aligned_cols=175 Identities=14% Similarity=0.186 Sum_probs=127.4
Q ss_pred CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC-CCeEEEEeCCCCCCCCeeE
Q psy10778 346 GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN-TIGYIREIPCVDPNTPVSH 424 (556)
Q Consensus 346 g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~-~~~~v~~l~~~h~~~~V~~ 424 (556)
..|.|||=... +++..+ ....+|.++.+.++ .|+.. ..+.|.||... +.+.++.+.. . ..+=-.
T Consensus 75 NkviIWDD~k~---------~~i~el-~f~~~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et-~-~NPkGl 139 (346)
T KOG2111|consen 75 NKVIIWDDLKE---------RCIIEL-SFNSEIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIET-R-SNPKGL 139 (346)
T ss_pred ceEEEEecccC---------cEEEEE-EeccceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeec-c-cCCCce
Confidence 47999992221 233333 36688999999865 45544 36789999887 4455555544 2 111113
Q ss_pred EEEeCC--CCeEEEEeecCcCCCCeEEEEEeCCc----EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCe-EEEEe
Q psy10778 425 VTMSET--NGEIASVLQTTKTGGSILRLHTINAQ----LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGT-IQLWS 497 (556)
Q Consensus 425 l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~g~----~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-I~iwd 497 (556)
++.+|. ...||.-+. .-|.|.+-|+... +.....|.+.|.|++.+ .+| .++||++..|+ |||||
T Consensus 140 C~~~~~~~k~~LafPg~----k~GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln--~~G---t~vATaStkGTLIRIFd 210 (346)
T KOG2111|consen 140 CSLCPTSNKSLLAFPGF----KTGQVQIVDLASTKPNAPSIINAHDSDIACVALN--LQG---TLVATASTKGTLIRIFD 210 (346)
T ss_pred EeecCCCCceEEEcCCC----ccceEEEEEhhhcCcCCceEEEcccCceeEEEEc--CCc---cEEEEeccCcEEEEEEE
Confidence 334443 334443332 5699999999622 24445799999999999 899 89999999997 79999
Q ss_pred CCCCeEEEEecCCC-CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 498 GYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 498 ~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
..+|+.+.++..|. ...|.+|+|||++.+|+++|..|+|+|+.++..
T Consensus 211 t~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 211 TEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred cCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 99999999998633 477999999999999999999999999999773
|
|
| >KOG2139|consensus | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-10 Score=109.67 Aligned_cols=194 Identities=15% Similarity=0.166 Sum_probs=139.8
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCC-CEEEEEcCCCcEEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGF-SVAVSSSEDGTCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~i 401 (556)
...+..++|++.-..+|++..|-+|++|+-... ....++ .....|+|++|-|-+ +.++.|+..| |.+
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst----------~pt~Lks~sQrnvtclawRPlsaselavgCr~g-Ici 166 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSST----------CPTKLKSVSQRNVTCLAWRPLSASELAVGCRAG-ICI 166 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCC----------CCceecchhhcceeEEEeccCCcceeeeeecce-eEE
Confidence 345788999997777899999999999996642 223333 234579999999965 4677777655 889
Q ss_pred EeCCCC----eE----------EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCC
Q psy10778 402 WDINTI----GY----------IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASEL 465 (556)
Q Consensus 402 wdl~~~----~~----------v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~ 465 (556)
|..... .. +...++ ..+|++++|++||..+++++. .+..|.+||.+ |..+... ...+
T Consensus 167 W~~s~tln~~r~~~~~s~~~~qvl~~pg---h~pVtsmqwn~dgt~l~tAS~----gsssi~iWdpdtg~~~pL~~~glg 239 (445)
T KOG2139|consen 167 WSDSRTLNANRNIRMMSTHHLQVLQDPG---HNPVTSMQWNEDGTILVTASF----GSSSIMIWDPDTGQKIPLIPKGLG 239 (445)
T ss_pred EEcCcccccccccccccccchhheeCCC---CceeeEEEEcCCCCEEeeccc----CcceEEEEcCCCCCcccccccCCC
Confidence 976531 11 112223 478999999999999999985 67899999998 4444333 4567
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+.-+.|| ||| .+|.+++-|+..++|+.. +....+-.. + .+.|...+|+|+|++|+-... |.-++|.+.-
T Consensus 240 g~slLkwS--Pdg---d~lfaAt~davfrlw~e~q~wt~erw~l-g-sgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 240 GFSLLKWS--PDG---DVLFAATCDAVFRLWQENQSWTKERWIL-G-SGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred ceeeEEEc--CCC---CEEEEecccceeeeehhcccceecceec-c-CCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 88999999 999 899999999999999543 333333333 3 469999999999987765442 3344555543
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=2.4e-09 Score=113.77 Aligned_cols=215 Identities=10% Similarity=0.044 Sum_probs=138.9
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
.|.++|.+.+...... .+...+...+|+|||+.|+..+.+ ..|.+|++.++. ...+....+.+..
T Consensus 180 ~l~~~d~~g~~~~~l~--~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~----------~~~l~~~~g~~~~ 247 (430)
T PRK00178 180 TLQRSDYDGARAVTLL--QSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR----------REQITNFEGLNGA 247 (430)
T ss_pred EEEEECCCCCCceEEe--cCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC----------EEEccCCCCCcCC
Confidence 4777777765443333 466788999999999999876643 357888886541 1223333344557
Q ss_pred EEEccCCCEEE-EEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE
Q psy10778 381 LYLCAGFSVAV-SSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL 457 (556)
Q Consensus 381 l~~s~~~~~l~-sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~ 457 (556)
.+|+|+|+.|+ +.+.+| .|.+||+.+++.. .+.. + ........|+|+++.|+..+... ....|+++++.+..
T Consensus 248 ~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~-~lt~-~-~~~~~~~~~spDg~~i~f~s~~~--g~~~iy~~d~~~g~ 322 (430)
T PRK00178 248 PAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLS-RVTN-H-PAIDTEPFWGKDGRTLYFTSDRG--GKPQIYKVNVNGGR 322 (430)
T ss_pred eEECCCCCEEEEEEccCCCceEEEEECCCCCeE-Eccc-C-CCCcCCeEECCCCCEEEEEECCC--CCceEEEEECCCCC
Confidence 89999998776 555555 5888899887644 4544 4 55667789999999988776321 23467777876332
Q ss_pred EEEee-cCCCeEEEEEeeCCCCCcceEEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 458 ITSLA-SELRITSVTFSNAPEGVSQNVIVTGHS-DG--TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 458 i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
...+. .........|+ |+| +.|+..+. ++ .|.+||+.+++. ..+... .......|+|||+.++..+.+
T Consensus 323 ~~~lt~~~~~~~~~~~S--pdg---~~i~~~~~~~~~~~l~~~dl~tg~~-~~lt~~--~~~~~p~~spdg~~i~~~~~~ 394 (430)
T PRK00178 323 AERVTFVGNYNARPRLS--ADG---KTLVMVHRQDGNFHVAAQDLQRGSV-RILTDT--SLDESPSVAPNGTMLIYATRQ 394 (430)
T ss_pred EEEeecCCCCccceEEC--CCC---CEEEEEEccCCceEEEEEECCCCCE-EEccCC--CCCCCceECCCCCEEEEEEec
Confidence 33332 22334457899 888 67766553 33 588899887764 334322 222356899999988876643
Q ss_pred ---CcEEEEEcCC
Q psy10778 534 ---GLVIIWESSS 543 (556)
Q Consensus 534 ---g~V~vwdl~~ 543 (556)
+.|.++++..
T Consensus 395 ~g~~~l~~~~~~g 407 (430)
T PRK00178 395 QGRGVLMLVSING 407 (430)
T ss_pred CCceEEEEEECCC
Confidence 3466777754
|
|
| >KOG2321|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=3.3e-10 Score=115.59 Aligned_cols=219 Identities=13% Similarity=0.194 Sum_probs=155.9
Q ss_pred CCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcc-------------------cccccCCCeEeeCCCc-----
Q psy10778 322 PLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTN-------------------KIEFCKPPTILLGHSA----- 376 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~-------------------~~~~~~~~~~l~~h~~----- 376 (556)
++...-+.|..+|||+|+ |||..--.|++||+.....+- +......-+.+.-|..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 577788899999999985 667788899999986432100 0000011111221211
Q ss_pred ------cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 377 ------CVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 377 ------~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
.-.+++++...--|..++....|+-.++..|+.+..+.. . .+.++++.+++..+.|++|+ .+|.|..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~-~-~~~lN~v~in~~hgLla~Gt-----~~g~VEf 201 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFET-D-SGELNVVSINEEHGLLACGT-----EDGVVEF 201 (703)
T ss_pred eeecCcCCccccccCCCccEEEeecCcceEEEEcccccccccccc-c-cccceeeeecCccceEEecc-----cCceEEE
Confidence 112333333222344555556788899999999999887 5 68999999999999999998 8999999
Q ss_pred EEeC-CcEEEEeec-------C-----CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEE
Q psy10778 451 HTIN-AQLITSLAS-------E-----LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIA 517 (556)
Q Consensus 451 wdi~-g~~i~~~~~-------~-----~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 517 (556)
||.+ ...+..+.. . ..|+++.|+ .+| -.+++|+++|.|.|||+++.+++..-..+...+|..
T Consensus 202 wDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~--d~g---L~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~ 276 (703)
T KOG2321|consen 202 WDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFR--DDG---LHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKK 276 (703)
T ss_pred ecchhhhhheeeecccccCCCccccccCcceEEEec--CCc---eeEEeeccCCcEEEEEcccCCceeecccCCccceee
Confidence 9997 333444422 1 249999999 778 789999999999999999999887776566789999
Q ss_pred EEEecC--CCEEEEEcCCCcEEEEEcCCCCCcCeeecc
Q psy10778 518 VTYSCD--SQHLYASNTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 518 l~~s~d--g~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
+.|.+. +..+++ .....++|||-.+++....+.+.
T Consensus 277 l~~~~~~~q~~v~S-~Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 277 LDWQDTDQQNKVVS-MDKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred ecccccCCCceEEe-cchHHhhhcccccCCceeecccc
Confidence 999775 344554 44568899999998876665543
|
|
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.24 E-value=1.8e-10 Score=124.97 Aligned_cols=182 Identities=18% Similarity=0.178 Sum_probs=147.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC---ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA---TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~---~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.++.+..++.+.+|+...+.....+...... ...-+..+++.-++++|+.-+.|.+|+.... .....+
T Consensus 101 ~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~d---------n~p~~l 171 (967)
T KOG0974|consen 101 KIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHED---------NKPIRL 171 (967)
T ss_pred eEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEecccc---------CCccee
Confidence 5666778899999998876555444322111 1222334567779999999999999998733 222368
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
.||.+.|..+.++.+|+++++.|+|.++++|++.+++... +.-+ | ...|..+.+.|. .|++++ .|.+.++
T Consensus 172 ~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fg-H-saRvw~~~~~~n--~i~t~g-----edctcrv 242 (967)
T KOG0974|consen 172 KGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFG-H-SARVWACCFLPN--RIITVG-----EDCTCRV 242 (967)
T ss_pred cccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccc-c-cceeEEEEeccc--eeEEec-----cceEEEE
Confidence 9999999999999999999999999999999999988776 6667 8 899999999998 899998 9999999
Q ss_pred EEeCCcEEEEee-c-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC
Q psy10778 451 HTINAQLITSLA-S-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 451 wdi~g~~i~~~~-~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~ 499 (556)
|+.++..+..+. | ...+..++.. ++. ..++|++.||.+++||+.
T Consensus 243 W~~~~~~l~~y~~h~g~~iw~~~~~--~~~---~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 243 WGVNGTQLEVYDEHSGKGIWKIAVP--IGV---IIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred EecccceehhhhhhhhcceeEEEEc--CCc---eEEEeeccCcchhhhhhh
Confidence 999988887764 3 4688899988 665 789999999999999973
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.8e-10 Score=106.61 Aligned_cols=186 Identities=11% Similarity=0.134 Sum_probs=139.5
Q ss_pred EEeccCCCeEEEEeC-CCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 296 ICWNECDNLIRLKMS-KELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~-~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+...+.|.++|+|-. +.++.-+.+...-..+++++.+.++.+.|++|-..|++.-+.+...-. .+...+....|
T Consensus 39 v~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfn-----km~~~r~~~~h 113 (404)
T KOG1409|consen 39 VISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFN-----KMTFLKDYLAH 113 (404)
T ss_pred eEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEhhhhhh-----hcchhhhhhhh
Confidence 445689999999954 455555555544567899999999999999999999999887754311 11445667789
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCC-----------------------------------------CCeEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDIN-----------------------------------------TIGYIREI 413 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~-----------------------------------------~~~~v~~l 413 (556)
...|..+.|+....++++.+.|..+.-.-.+ ....+.++
T Consensus 114 ~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i~~~ 193 (404)
T KOG1409|consen 114 QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLITTF 193 (404)
T ss_pred hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceEEEE
Confidence 9999999998888888887777543221111 11234566
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC---cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA---QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD 490 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g---~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d 490 (556)
.+ | ...+.+++|.+..+.+.++. .|..+.+||+-| .......|...|..++.. +.- +.+.+++.|
T Consensus 194 ~~-h-~~~~~~l~Wd~~~~~LfSg~-----~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~--~~t---~~l~S~~ed 261 (404)
T KOG1409|consen 194 NG-H-TGEVTCLKWDPGQRLLFSGA-----SDHSVIMWDIGGRKGTAYELQGHNDKVQALSYA--QHT---RQLISCGED 261 (404)
T ss_pred cC-c-ccceEEEEEcCCCcEEEecc-----ccCceEEEeccCCcceeeeeccchhhhhhhhhh--hhh---eeeeeccCC
Confidence 67 8 89999999999999999998 899999999963 344444577888888777 555 789999999
Q ss_pred CeEEEEeC
Q psy10778 491 GTIQLWSG 498 (556)
Q Consensus 491 g~I~iwd~ 498 (556)
|.|.+|++
T Consensus 262 g~i~~w~m 269 (404)
T KOG1409|consen 262 GGIVVWNM 269 (404)
T ss_pred CeEEEEec
Confidence 99999998
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=9.3e-09 Score=106.10 Aligned_cols=233 Identities=13% Similarity=0.131 Sum_probs=149.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.-..+|.|.+.|..+.+.+..+..+. ..-..+.+++||+++++++.||.|.++|+.+. +.+..+...
T Consensus 8 ~~V~~~~~~~v~viD~~t~~~~~~i~~~~-~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~---------~~v~~i~~G 77 (369)
T PF02239_consen 8 FYVVERGSGSVAVIDGATNKVVARIPTGG-APHAGLKFSPDGRYLYVANRDGTVSVIDLATG---------KVVATIKVG 77 (369)
T ss_dssp EEEEEGGGTEEEEEETTT-SEEEEEE-ST-TEEEEEE-TT-SSEEEEEETTSEEEEEETTSS---------SEEEEEE-S
T ss_pred EEEEecCCCEEEEEECCCCeEEEEEcCCC-CceeEEEecCCCCEEEEEcCCCeEEEEECCcc---------cEEEEEecC
Confidence 44566788999999999988888876433 22344678999999999999999999999876 455666554
Q ss_pred CccEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCC------CCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 375 SACVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGYIREIPCVD------PNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h------~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
. ...+++++++|++++++. .++.+.++|.++.+.++.+.. . ....+..+..++....++..-. +.+.
T Consensus 78 ~-~~~~i~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~-~~~~~~~~~~Rv~aIv~s~~~~~fVv~lk----d~~~ 151 (369)
T PF02239_consen 78 G-NPRGIAVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPT-GGMPVDGPESRVAAIVASPGRPEFVVNLK----DTGE 151 (369)
T ss_dssp S-EEEEEEE--TTTEEEEEEEETTEEEEEETTT--EEEEEE---EE-TTTS---EEEEEE-SSSSEEEEEET----TTTE
T ss_pred C-CcceEEEcCCCCEEEEEecCCCceeEeccccccceeeccc-ccccccccCCCceeEEecCCCCEEEEEEc----cCCe
Confidence 4 457899999999888765 689999999999999988764 2 0245778888888875555542 4588
Q ss_pred EEEEEeC-Cc--EEEEeecCCCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCCeEEEEecC--------------
Q psy10778 448 LRLHTIN-AQ--LITSLASELRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKLAHLLTLNT-------------- 509 (556)
Q Consensus 448 I~iwdi~-g~--~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~~~~~~~~~-------------- 509 (556)
|.+.|.. .+ ....+..........|+ |++ +++++ ...+..|-++|..+++.+..+..
T Consensus 152 I~vVdy~d~~~~~~~~i~~g~~~~D~~~d--pdg---ry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~ph 226 (369)
T PF02239_consen 152 IWVVDYSDPKNLKVTTIKVGRFPHDGGFD--PDG---RYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPH 226 (369)
T ss_dssp EEEEETTTSSCEEEEEEE--TTEEEEEE---TTS---SEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEE
T ss_pred EEEEEeccccccceeeecccccccccccC--ccc---ceeeecccccceeEEEeeccceEEEEeeccccccccccccccC
Confidence 8888865 22 33455567788888999 888 66555 44566777777755544433211
Q ss_pred ----------------------------------------CCCCCeEEEEEecCCCEEEEE----cCCCcEEEEEcCCCC
Q psy10778 510 ----------------------------------------NVALPVIAVTYSCDSQHLYAS----NTEGLVIIWESSSHN 545 (556)
Q Consensus 510 ----------------------------------------~h~~~V~~l~~s~dg~~l~sg----s~Dg~V~vwdl~~~~ 545 (556)
....+ .-+..+|+++++.+. ...+.|.++|.++.+
T Consensus 227 p~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~ 305 (369)
T PF02239_consen 227 PGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLK 305 (369)
T ss_dssp TTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTE
T ss_pred CCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcc
Confidence 11122 346778999999988 455899999998865
Q ss_pred CcCe
Q psy10778 546 RTPK 549 (556)
Q Consensus 546 ~~~~ 549 (556)
...+
T Consensus 306 ~~~~ 309 (369)
T PF02239_consen 306 VVKT 309 (369)
T ss_dssp EEE-
T ss_pred eeEE
Confidence 4433
|
... |
| >KOG0974|consensus | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.2e-09 Score=118.65 Aligned_cols=143 Identities=16% Similarity=0.099 Sum_probs=121.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.-+.|.+|+.... ..+....+|.+.|-++.++.||+++++.|.|.++|+|++++.. ....+..+|
T Consensus 147 ~i~~gsv~~~iivW~~~~d-n~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~--------~~~~~~fgH 217 (967)
T KOG0974|consen 147 YIASGSVFGEIIVWKPHED-NKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSRE--------VLGCTGFGH 217 (967)
T ss_pred EEEeccccccEEEEecccc-CCcceecccCCceEEEEEccCCcEEEEEecCcceeeeeccccc--------ccCcccccc
Confidence 8999999999999998733 2333445999999999999999999999999999999999872 122477899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
+.+|..+++.|. .++|+++|.++++|+.+ ++.+..+.. |....+..++..++...+++++ .|+.+++|++.
T Consensus 218 saRvw~~~~~~n--~i~t~gedctcrvW~~~-~~~l~~y~~-h~g~~iw~~~~~~~~~~~vT~g-----~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 218 SARVWACCFLPN--RIITVGEDCTCRVWGVN-GTQLEVYDE-HSGKGIWKIAVPIGVIIKVTGG-----NDSTLKLWDLN 288 (967)
T ss_pred cceeEEEEeccc--eeEEeccceEEEEEecc-cceehhhhh-hhhcceeEEEEcCCceEEEeec-----cCcchhhhhhh
Confidence 999999999998 89999999999999876 555667777 7457899999999988888888 89999999985
Q ss_pred C
Q psy10778 455 A 455 (556)
Q Consensus 455 g 455 (556)
+
T Consensus 289 ~ 289 (967)
T KOG0974|consen 289 G 289 (967)
T ss_pred c
Confidence 3
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.20 E-value=7.2e-09 Score=110.28 Aligned_cols=215 Identities=11% Similarity=0.047 Sum_probs=133.2
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CC--cEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SG--NILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
.|.++|.......... .+...+.+.+|+|||+.|+..+. ++ .|.+||+.++. ...+....+....
T Consensus 199 ~l~i~d~dG~~~~~l~--~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~----------~~~lt~~~g~~~~ 266 (448)
T PRK04792 199 QLMIADYDGYNEQMLL--RSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV----------REKVTSFPGINGA 266 (448)
T ss_pred EEEEEeCCCCCceEee--cCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC----------eEEecCCCCCcCC
Confidence 5666776654433222 45678889999999999887653 33 47777776541 1222222333456
Q ss_pred EEEccCCCEEE-EEcCCCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE
Q psy10778 381 LYLCAGFSVAV-SSSEDGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL 457 (556)
Q Consensus 381 l~~s~~~~~l~-sgs~Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~ 457 (556)
.+|+|+|+.|+ +.+.+|. |.++|+.+++. +.+.. + .......+|+||++.|+..+... ....|+++|+.+..
T Consensus 267 ~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~-~~lt~-~-~~~~~~p~wSpDG~~I~f~s~~~--g~~~Iy~~dl~~g~ 341 (448)
T PRK04792 267 PRFSPDGKKLALVLSKDGQPEIYVVDIATKAL-TRITR-H-RAIDTEPSWHPDGKSLIFTSERG--GKPQIYRVNLASGK 341 (448)
T ss_pred eeECCCCCEEEEEEeCCCCeEEEEEECCCCCe-EECcc-C-CCCccceEECCCCCEEEEEECCC--CCceEEEEECCCCC
Confidence 89999999765 4566775 77778887654 44544 4 55667899999999998776321 23457777776333
Q ss_pred EEEee-cCCCeEEEEEeeCCCCCcceEEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC-
Q psy10778 458 ITSLA-SELRITSVTFSNAPEGVSQNVIVTGHS-DG--TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT- 532 (556)
Q Consensus 458 i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~- 532 (556)
...+. ........+|+ |+| +.|+..+. ++ .|.++|+.+++. ..+... .......|+|||+.|+..+.
T Consensus 342 ~~~Lt~~g~~~~~~~~S--pDG---~~l~~~~~~~g~~~I~~~dl~~g~~-~~lt~~--~~d~~ps~spdG~~I~~~~~~ 413 (448)
T PRK04792 342 VSRLTFEGEQNLGGSIT--PDG---RSMIMVNRTNGKFNIARQDLETGAM-QVLTST--RLDESPSVAPNGTMVIYSTTY 413 (448)
T ss_pred EEEEecCCCCCcCeeEC--CCC---CEEEEEEecCCceEEEEEECCCCCe-EEccCC--CCCCCceECCCCCEEEEEEec
Confidence 33332 22334457899 888 66665443 44 455678777654 333311 12234589999998776554
Q ss_pred CCc--EEEEEcCC
Q psy10778 533 EGL--VIIWESSS 543 (556)
Q Consensus 533 Dg~--V~vwdl~~ 543 (556)
+|. +.+++...
T Consensus 414 ~g~~~l~~~~~~G 426 (448)
T PRK04792 414 QGKQVLAAVSIDG 426 (448)
T ss_pred CCceEEEEEECCC
Confidence 343 66777644
|
|
| >KOG2111|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1.4e-08 Score=97.15 Aligned_cols=213 Identities=14% Similarity=0.200 Sum_probs=147.1
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC--CCccEEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG--HSACVTD 380 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~--h~~~V~~ 380 (556)
+.|-|||-...+.+..+ .-..+|.++.+.++ .|++.- .+.|.||....+. +.++.+.. ....+.+
T Consensus 75 NkviIWDD~k~~~i~el--~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~--------k~l~~~et~~NPkGlC~ 141 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIEL--SFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNP--------KLLHVIETRSNPKGLCS 141 (346)
T ss_pred ceEEEEecccCcEEEEE--EeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCCh--------hheeeeecccCCCceEe
Confidence 67999995554444433 56789999999875 566555 4799999987541 22232221 1223444
Q ss_pred EEEccCCCEEEE-EcCCCcEEEEeCCCCeE--EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc
Q psy10778 381 LYLCAGFSVAVS-SSEDGTCLLWDINTIGY--IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ 456 (556)
Q Consensus 381 l~~s~~~~~l~s-gs~Dg~I~iwdl~~~~~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~ 456 (556)
++-..+..+||. |-.-|.|.|-|+...+. -..+.. | .+.|.|++++.+|..+|+++. .+.-|||||.. |.
T Consensus 142 ~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~A-H-~s~Iacv~Ln~~Gt~vATaSt----kGTLIRIFdt~~g~ 215 (346)
T KOG2111|consen 142 LCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINA-H-DSDIACVALNLQGTLVATAST----KGTLIRIFDTEDGT 215 (346)
T ss_pred ecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEc-c-cCceeEEEEcCCccEEEEecc----CcEEEEEEEcCCCc
Confidence 333333344554 45679999999987655 367788 9 999999999999999999993 44458999997 89
Q ss_pred EEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE------------------------EecC
Q psy10778 457 LITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL------------------------TLNT 509 (556)
Q Consensus 457 ~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~------------------------~~~~ 509 (556)
++.++.. ...|.|++|| |+. .+|++++..|+|+|+.++....-. .+.
T Consensus 216 ~l~E~RRG~d~A~iy~iaFS--p~~---s~LavsSdKgTlHiF~l~~~~~~~~~~SSl~~~~~~lpky~~S~wS~~~f~- 289 (346)
T KOG2111|consen 216 LLQELRRGVDRADIYCIAFS--PNS---SWLAVSSDKGTLHIFSLRDTENTEDESSSLSFKRLVLPKYFSSEWSFAKFQ- 289 (346)
T ss_pred EeeeeecCCchheEEEEEeC--CCc---cEEEEEcCCCeEEEEEeecCCCCccccccccccccccchhcccceeEEEEE-
Confidence 9988853 5689999999 888 899999999999999875422111 111
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
-..++..-++|-.+...++..+.||.-+-+.
T Consensus 290 l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~ 320 (346)
T KOG2111|consen 290 LPQGTQCIIAFGSETNTVIAICADGSYYKFK 320 (346)
T ss_pred ccCCCcEEEEecCCCCeEEEEEeCCcEEEEE
Confidence 1134555667776655666677778765433
|
|
| >KOG3881|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=1e-09 Score=107.51 Aligned_cols=212 Identities=13% Similarity=0.102 Sum_probs=153.8
Q ss_pred eEEeccCCCeEEEEeCCCCC--CcceEcCCCCCceEEEEEcCCCC-EEEEEeCC--CcEEEEEeeeccCcccccccCCC-
Q psy10778 295 MICWNECDNLIRLKMSKELP--ATPVIRPPLGATIATATTAPDCH-TLWLGLTS--GNILVYEYELNASTNKIEFCKPP- 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~--~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~D--g~I~vwd~~~~~~~~~~~~~~~~- 368 (556)
.|..+-.+|.+.+|..+.+. ....+...-..++..+.-++... .+++|+.. ..+.+||+....+. ...+.+
T Consensus 117 ~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi---w~aKNvp 193 (412)
T KOG3881|consen 117 TLITCVSSGNLQVRHDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI---WSAKNVP 193 (412)
T ss_pred EEEEEecCCcEEEEeccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceee---eeccCCC
Confidence 56667889999999988443 11112222335566676666544 55668988 88999999865110 000000
Q ss_pred eEeeC--CCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 369 TILLG--HSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 369 ~~l~~--h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
...-+ -.-.++++.|-+. ...+++++.-+.+++||.+.+ +++..+.- . ..+++++...|.++.|+++.
T Consensus 194 nD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~-~-E~~is~~~l~p~gn~Iy~gn----- 266 (412)
T KOG3881|consen 194 NDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDF-L-ENPISSTGLTPSGNFIYTGN----- 266 (412)
T ss_pred CccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEecc-c-cCcceeeeecCCCcEEEEec-----
Confidence 00001 1123568888877 679999999999999999875 46777776 5 78999999999999999998
Q ss_pred CCCeEEEEEeC-CcEEEE-e-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 444 GGSILRLHTIN-AQLITS-L-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~-~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
..+.+..||++ +++... + ...+.++++..+ |.+ .++++++-|..|||+|+.+.+++...- -...++++.+
T Consensus 267 ~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~h--p~~---~~las~GLDRyvRIhD~ktrkll~kvY--vKs~lt~il~ 339 (412)
T KOG3881|consen 267 TKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCH--PTH---PVLASCGLDRYVRIHDIKTRKLLHKVY--VKSRLTFILL 339 (412)
T ss_pred ccchhheecccCceeeccccCCccCCcceEEEc--CCC---ceEEeeccceeEEEeecccchhhhhhh--hhccccEEEe
Confidence 88999999999 555555 3 357899999999 787 899999999999999999988776665 3567788877
Q ss_pred ecC
Q psy10778 521 SCD 523 (556)
Q Consensus 521 s~d 523 (556)
.++
T Consensus 340 ~~~ 342 (412)
T KOG3881|consen 340 RDD 342 (412)
T ss_pred cCC
Confidence 654
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.19 E-value=4.7e-09 Score=111.17 Aligned_cols=200 Identities=15% Similarity=0.118 Sum_probs=129.5
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
...|.+|++.+++..... ...+.+.+.+|+|||+.|+ +.+.+|...||.++... .....+..+......
T Consensus 219 ~~~I~~~dl~~g~~~~l~--~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~--------~~~~~lt~~~~~~~~ 288 (427)
T PRK02889 219 KPVVYVHDLATGRRRVVA--NFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADG--------SGLRRLTQSSGIDTE 288 (427)
T ss_pred CcEEEEEECCCCCEEEee--cCCCCccceEECCCCCEEEEEEccCCCceEEEEECCC--------CCcEECCCCCCCCcC
Confidence 346999999887654433 2335567899999999887 46778888888876431 123445556556677
Q ss_pred EEEccCCCEEEEEcC-CCcEEEEeC--CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE
Q psy10778 381 LYLCAGFSVAVSSSE-DGTCLLWDI--NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL 457 (556)
Q Consensus 381 l~~s~~~~~l~sgs~-Dg~I~iwdl--~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~ 457 (556)
..|+|||+.|+..+. +|...+|.+ .+++. +.+.. . .......+|+|+|+.|+..+..+ ....|.+||+.+..
T Consensus 289 ~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~-~-g~~~~~~~~SpDG~~Ia~~s~~~--g~~~I~v~d~~~g~ 363 (427)
T PRK02889 289 PFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTF-T-GSYNTSPRISPDGKLLAYISRVG--GAFKLYVQDLATGQ 363 (427)
T ss_pred eEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEec-C-CCCcCceEECCCCCEEEEEEccC--CcEEEEEEECCCCC
Confidence 899999998776553 566667654 44443 33322 2 33445688999999999876311 12379999997433
Q ss_pred EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC-C--eEEEEeCCCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSD-G--TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 458 i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d-g--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
...+..........|+ |+| +.|+.++.+ | .+.+.++ +++....+. .+.+.+...+|+|-
T Consensus 364 ~~~lt~~~~~~~p~~s--pdg---~~l~~~~~~~g~~~l~~~~~-~g~~~~~l~-~~~g~~~~p~wsp~ 425 (427)
T PRK02889 364 VTALTDTTRDESPSFA--PNG---RYILYATQQGGRSVLAAVSS-DGRIKQRLS-VQGGDVREPSWGPF 425 (427)
T ss_pred eEEccCCCCccCceEC--CCC---CEEEEEEecCCCEEEEEEEC-CCCceEEee-cCCCCCCCCccCCC
Confidence 3344333445678999 898 666665533 3 3555566 566666665 45566777888863
|
|
| >KOG4497|consensus | Back alignment and domain information |
|---|
Probab=99.19 E-value=5e-10 Score=107.21 Aligned_cols=193 Identities=11% Similarity=0.092 Sum_probs=138.7
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCE-EEEEcCCCcEEEEeCCCC
Q psy10778 329 TATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSV-AVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 329 ~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~I~iwdl~~~ 407 (556)
-++|+|+|+++|+++.- .+.|-|..+- + +..+..--+.|..+.|..|.-. |.....|+.|.+|++...
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tl---------q-~~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvwsl~Qp 81 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETL---------Q-LHQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWSLVQP 81 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchh---------h-HHHHHHHHHHhhheeeeccceeeeeeeeccceEEEEEeecc
Confidence 36799999999999865 6666665543 1 1222223467788899987764 556688999999999999
Q ss_pred eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-CCCeEEEEEeeCCCCCcceEEEE
Q psy10778 408 GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNAPEGVSQNVIVT 486 (556)
Q Consensus 408 ~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~t 486 (556)
+.-..+.. . ..++..+.|||+|+.|+..+. -+-.|.+|.++.+....+++ ...+..++|. ++| ++.+.
T Consensus 82 ew~ckIde-g-~agls~~~WSPdgrhiL~tse----F~lriTVWSL~t~~~~~~~~pK~~~kg~~f~--~dg---~f~ai 150 (447)
T KOG4497|consen 82 EWYCKIDE-G-QAGLSSISWSPDGRHILLTSE----FDLRITVWSLNTQKGYLLPHPKTNVKGYAFH--PDG---QFCAI 150 (447)
T ss_pred eeEEEecc-C-CCcceeeeECCCcceEeeeec----ceeEEEEEEeccceeEEecccccCceeEEEC--CCC---ceeee
Confidence 88888887 5 789999999999988887774 78899999998655555544 3455777888 777 55554
Q ss_pred EeC------------------------------------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 487 GHS------------------------------------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 487 g~~------------------------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
.+. +..+.+||.--.-.+..+. -.-.+..++|+|.+++|+.|
T Consensus 151 ~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe--~~lG~k~v~wsP~~qflavG 228 (447)
T KOG4497|consen 151 LSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYE--RGLGLKFVEWSPCNQFLAVG 228 (447)
T ss_pred eecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeee--eccceeEEEeccccceEEee
Confidence 432 2335555543222333333 23678899999999999999
Q ss_pred cCCCcEEEEEcCCCC
Q psy10778 531 NTEGLVIIWESSSHN 545 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~ 545 (556)
+.|+.++|.+--+.+
T Consensus 229 syD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 229 SYDQMLRVLNHFTWK 243 (447)
T ss_pred ccchhhhhhceeeee
Confidence 999999987654433
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=4.7e-09 Score=111.55 Aligned_cols=176 Identities=13% Similarity=0.024 Sum_probs=122.8
Q ss_pred cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCCee
Q psy10778 347 NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE---DGTCLLWDINTIGYIREIPCVDPNTPVS 423 (556)
Q Consensus 347 ~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iwdl~~~~~v~~l~~~h~~~~V~ 423 (556)
.|.++|.+.. ..+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+.. + .+.+.
T Consensus 183 ~l~~~d~dg~----------~~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~-~-~g~~~ 249 (435)
T PRK05137 183 RLAIMDQDGA----------NVRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGN-F-PGMTF 249 (435)
T ss_pred EEEEECCCCC----------CcEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-Eeec-C-CCccc
Confidence 6777776542 33567788889999999999998887653 468999999987654 3444 4 56778
Q ss_pred EEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEe-CCC--eEEEEeCC
Q psy10778 424 HVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGH-SDG--TIQLWSGY 499 (556)
Q Consensus 424 ~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg--~I~iwd~~ 499 (556)
..+|+|||+.|+...... ....|++||+.+.....+. +.......+|+ |+| +.|+..+ .+| .|+++|+.
T Consensus 250 ~~~~SPDG~~la~~~~~~--g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~s--pDG---~~i~f~s~~~g~~~Iy~~d~~ 322 (435)
T PRK05137 250 APRFSPDGRKVVMSLSQG--GNTDIYTMDLRSGTTTRLTDSPAIDTSPSYS--PDG---SQIVFESDRSGSPQLYVMNAD 322 (435)
T ss_pred CcEECCCCCEEEEEEecC--CCceEEEEECCCCceEEccCCCCccCceeEc--CCC---CEEEEEECCCCCCeEEEEECC
Confidence 899999999887654311 2345788888754444443 44456778999 898 6676655 333 68888876
Q ss_pred CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC---CcEEEEEcCCC
Q psy10778 500 KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE---GLVIIWESSSH 544 (556)
Q Consensus 500 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D---g~V~vwdl~~~ 544 (556)
.++. ..+. .+...+....|+|||+.|+..+.+ ..|.+|++.++
T Consensus 323 g~~~-~~lt-~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 323 GSNP-RRIS-FGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred CCCe-EEee-cCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 5544 4443 234556778999999999876543 36888887553
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-09 Score=113.74 Aligned_cols=198 Identities=15% Similarity=0.078 Sum_probs=129.8
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCC--cEEEEEeeeccCcccccccCCCeEeeCCCcc
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSG--NILVYEYELNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
.+..|++|++.+++..... ...+...+.+|+|||+.|+ +.+.+| .|++|++.++ ....+..+...
T Consensus 226 ~~~~l~~~dl~~g~~~~l~--~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g----------~~~~lt~~~~~ 293 (433)
T PRK04922 226 GRSAIYVQDLATGQRELVA--SFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSR----------QLTRLTNHFGI 293 (433)
T ss_pred CCcEEEEEECCCCCEEEec--cCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCC----------CeEECccCCCC
Confidence 3457999999877654332 2344556789999999876 445555 4888887654 12345555555
Q ss_pred EEEEEEccCCCEEEEEc-CCCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 378 VTDLYLCAGFSVAVSSS-EDGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs-~Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
....+|+|+|+.|+.++ .+|. |.++|+.+++..+ +.. + ......++|+|+|+.|+..+... ....|.+||+.
T Consensus 294 ~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~-lt~-~-g~~~~~~~~SpDG~~Ia~~~~~~--~~~~I~v~d~~ 368 (433)
T PRK04922 294 DTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAER-LTF-Q-GNYNARASVSPDGKKIAMVHGSG--GQYRIAVMDLS 368 (433)
T ss_pred ccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEE-eec-C-CCCccCEEECCCCCEEEEEECCC--CceeEEEEECC
Confidence 67889999999887665 4555 6667777665433 333 2 34455789999999998876311 23369999997
Q ss_pred CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 455 AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
+.....+..........|+ |+| +.++..+. .+.|.++++ ++.....+. .+.+.+...+|+|
T Consensus 369 ~g~~~~Lt~~~~~~~p~~s--pdG---~~i~~~s~~~g~~~L~~~~~-~g~~~~~l~-~~~g~~~~p~wsp 432 (433)
T PRK04922 369 TGSVRTLTPGSLDESPSFA--PNG---SMVLYATREGGRGVLAAVST-DGRVRQRLV-SADGEVREPAWSP 432 (433)
T ss_pred CCCeEECCCCCCCCCceEC--CCC---CEEEEEEecCCceEEEEEEC-CCCceEEcc-cCCCCCCCCccCC
Confidence 4333444444445667899 899 66665554 346778887 455566665 3456677778876
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.6e-08 Score=106.80 Aligned_cols=221 Identities=13% Similarity=0.022 Sum_probs=136.0
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE---EEEeCCCc--EEEEEeeeccCcccccccCCCeEeeCCCcc
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL---WLGLTSGN--ILVYEYELNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l---~tgs~Dg~--I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
..|.+.|...+...... .....+..-+|+|||+.+ ++...+|. |.+.++..+ + ...+....+.
T Consensus 165 ~~l~~~d~dG~~~~~lt--~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g---------~-~~~lt~~~g~ 232 (428)
T PRK01029 165 GELWSVDYDGQNLRPLT--QEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENP---------A-GKKILALQGN 232 (428)
T ss_pred ceEEEEcCCCCCceEcc--cCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCC---------C-ceEeecCCCC
Confidence 46777777665544433 234456778999999753 34445554 555555543 1 1233334455
Q ss_pred EEEEEEccCCCEEEEEcC-CC----cEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC--e
Q psy10778 378 VTDLYLCAGFSVAVSSSE-DG----TCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS--I 447 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs~-Dg----~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~--~ 447 (556)
....+|+|||+.|+..+. +| .+..|++..+ +..+.... . .......+|+|||+.|+..+. .++ .
T Consensus 233 ~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~-~-~~~~~~p~wSPDG~~Laf~s~----~~g~~~ 306 (428)
T PRK01029 233 QLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNE-A-FGTQGNPSFSPDGTRLVFVSN----KDGRPR 306 (428)
T ss_pred ccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecC-C-CCCcCCeEECCCCCEEEEEEC----CCCCce
Confidence 567899999987776542 33 3444777653 33333333 2 234567899999999988763 344 4
Q ss_pred EEEEEeC--CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeC-C--CeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 448 LRLHTIN--AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHS-D--GTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 448 I~iwdi~--g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~-d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
|.+++++ +.....+. ....+...+|+ |+| +.|+..+. + ..|.+||+.+++... +. .....+....|+
T Consensus 307 ly~~~~~~~g~~~~~lt~~~~~~~~p~wS--PDG---~~Laf~~~~~g~~~I~v~dl~~g~~~~-Lt-~~~~~~~~p~wS 379 (428)
T PRK01029 307 IYIMQIDPEGQSPRLLTKKYRNSSCPAWS--PDG---KKIAFCSVIKGVRQICVYDLATGRDYQ-LT-TSPENKESPSWA 379 (428)
T ss_pred EEEEECcccccceEEeccCCCCccceeEC--CCC---CEEEEEEcCCCCcEEEEEECCCCCeEE-cc-CCCCCccceEEC
Confidence 5555554 23233332 34566788999 899 66665543 2 469999998776543 33 223456789999
Q ss_pred cCCCEEEEEcC---CCcEEEEEcCCCCCcC
Q psy10778 522 CDSQHLYASNT---EGLVIIWESSSHNRTP 548 (556)
Q Consensus 522 ~dg~~l~sgs~---Dg~V~vwdl~~~~~~~ 548 (556)
|||+.|+..+. .+.|++|++.+++...
T Consensus 380 pDG~~L~f~~~~~g~~~L~~vdl~~g~~~~ 409 (428)
T PRK01029 380 IDSLHLVYSAGNSNESELYLISLITKKTRK 409 (428)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCEEE
Confidence 99998775433 3568889988765443
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-10 Score=130.92 Aligned_cols=198 Identities=14% Similarity=0.191 Sum_probs=159.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
.+-..|.++.-+|...+.+||+.||.|++|....+ ..+.... +..+.|+.+.|+.+|+.+..+..||.+.
T Consensus 2206 ~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~---------~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~ 2276 (2439)
T KOG1064|consen 2206 HPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG---------QQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLS 2276 (2439)
T ss_pred cccCceeeecCCCCCceEEecCCCceEEEEeccCC---------CeEEEeeccCcchhhhhhhcccCCceeeeccCCcee
Confidence 45677889988998899999999999999998765 2223222 2338899999999999999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---CcEEEEeecCCCeEEEEEeeCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN---AQLITSLASELRITSVTFSNAPE 477 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g~~i~~~~~~~~i~~i~~s~~pd 477 (556)
+|... .+.....++ | +.....+.|-. ..+++++.+. .++.+.+||.. +..+...-|.+.++++++. |.
T Consensus 2277 l~q~~-pk~~~s~qc-h-nk~~~Df~Fi~--s~~~tag~s~--d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~--P~ 2347 (2439)
T KOG1064|consen 2277 LWQAS-PKPYTSWQC-H-NKALSDFRFIG--SLLATAGRSS--DNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYA--PK 2347 (2439)
T ss_pred ecccC-Ccceecccc-C-Cccccceeeee--hhhhccccCC--CCCcccchhcccCcccceeeeecCCCceEEEEc--Cc
Confidence 99988 566777888 8 78888888864 5666665433 67899999985 3333335688999999999 77
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
. .+|++|+.+|.|++||++..++.+.+. . ++ ...++++|+..|.++||++..-..+.++.
T Consensus 2348 ~---qllisggr~G~v~l~D~rqrql~h~~~-~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2348 H---QLLISGGRKGEVCLFDIRQRQLRHTFQ-A---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred c---eEEEecCCcCcEEEeehHHHHHHHHhh-h---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 7 899999999999999999998888877 2 44 56789999999999999998866665554
|
|
| >KOG1310|consensus | Back alignment and domain information |
|---|
Probab=99.16 E-value=9.3e-11 Score=118.78 Aligned_cols=165 Identities=18% Similarity=0.250 Sum_probs=127.5
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCC
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTG 444 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~ 444 (556)
..+.+.||.+.|.|+.|+.+|.+|+|||.|-.+.|||.-..+.+..+...| ...|.++.|-|. ...+++|+ .
T Consensus 42 lE~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgH-taNIFsvKFvP~tnnriv~sgA-----g 115 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGH-TANIFSVKFVPYTNNRIVLSGA-----G 115 (758)
T ss_pred hhhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeeccc-ccceeEEeeeccCCCeEEEecc-----C
Confidence 346789999999999999999999999999999999999888888776548 899999999985 34666776 8
Q ss_pred CCeEEEEEeCCc--------E---EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE-------EE
Q psy10778 445 GSILRLHTINAQ--------L---ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH-------LL 505 (556)
Q Consensus 445 d~~I~iwdi~g~--------~---i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~-------~~ 505 (556)
|..|+++|++.. . .... -|...|..++-. |++. +.+.++++||+++-+|++.... ..
T Consensus 116 Dk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~--p~~P--htfwsasEDGtirQyDiREph~c~p~~~~~~ 191 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATA--PNGP--HTFWSASEDGTIRQYDIREPHVCNPDEDCPS 191 (758)
T ss_pred cceEEEEecccccccccccCccchhhhhhhhhhhhhheecC--CCCC--ceEEEecCCcceeeecccCCccCCccccccH
Confidence 999999999621 1 1111 245677778877 7775 7899999999999999976321 11
Q ss_pred EecC--CCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEc
Q psy10778 506 TLNT--NVALPVIAVTYSCDS-QHLYASNTEGLVIIWES 541 (556)
Q Consensus 506 ~~~~--~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl 541 (556)
.+.. ..--...+++.+|.. .+|++|+.|--.++||.
T Consensus 192 ~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~ 230 (758)
T KOG1310|consen 192 ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDR 230 (758)
T ss_pred HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhh
Confidence 1110 112346788999865 67889999999999995
|
|
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.15 E-value=9.7e-09 Score=105.73 Aligned_cols=188 Identities=15% Similarity=0.199 Sum_probs=145.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-C-CCCceEEEEEc--------------------CCCCEEEEEeCCCcEEEEE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-P-LGATIATATTA--------------------PDCHTLWLGLTSGNILVYE 352 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~-h~~~V~~i~~s--------------------~dg~~l~tgs~Dg~I~vwd 352 (556)
|+|....||.+|+|+...++....+.. . -.+..++..|. .+...++-|...|.|.+|+
T Consensus 7 ~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~~ys 86 (541)
T KOG4547|consen 7 YFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVLLYS 86 (541)
T ss_pred eEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEEEEE
Confidence 889999999999999998776554432 1 23445555552 2334778888889999999
Q ss_pred eeeccCcccccccCCCeEe--eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC
Q psy10778 353 YELNASTNKIEFCKPPTIL--LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430 (556)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~ 430 (556)
...+ +....+ .+|.+.|.++.++.+-..|.|++.|+.+..|+...++.++.+.. . ...+.+++++||
T Consensus 87 ~~~g---------~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~-~-~~~~~sl~is~D 155 (541)
T KOG4547|consen 87 VAGG---------EITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKE-Q-KPLVSSLCISPD 155 (541)
T ss_pred ecCC---------eEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeecc-C-CCccceEEEcCC
Confidence 8876 223333 47999999999999999999999999999999999999999988 6 788999999999
Q ss_pred CCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCC-cceEEEEEeCCCeEEEEeCCC
Q psy10778 431 NGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGV-SQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 431 ~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~-~~~~l~tg~~dg~I~iwd~~~ 500 (556)
++.+++++ ++|++||++ ++.+.++. |.+.|.++.|-..-+|. +..+|.+...+..+.+|-+..
T Consensus 156 ~~~l~~as-------~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 156 GKILLTAS-------RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred CCEEEecc-------ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 99999876 799999998 77888885 67899999998432332 114555555566677886543
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.14 E-value=9.4e-09 Score=106.09 Aligned_cols=191 Identities=14% Similarity=0.110 Sum_probs=134.5
Q ss_pred CEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy10778 337 HTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC 415 (556)
Q Consensus 337 ~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~ 415 (556)
+++ ++-..+|.|.+.|..+. +.+..+......-..+.+++||+++++++.||.|.++|+.+++.+.+++.
T Consensus 6 ~l~~V~~~~~~~v~viD~~t~---------~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~ 76 (369)
T PF02239_consen 6 NLFYVVERGSGSVAVIDGATN---------KVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKV 76 (369)
T ss_dssp GEEEEEEGGGTEEEEEETTT----------SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-
T ss_pred cEEEEEecCCCEEEEEECCCC---------eEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEec
Confidence 444 45567899999998765 55667765544445678999999999999999999999999999999987
Q ss_pred CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec--------CCCeEEEEEeeCCCCCcceEEEE
Q psy10778 416 VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS--------ELRITSVTFSNAPEGVSQNVIVT 486 (556)
Q Consensus 416 ~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~--------~~~i~~i~~s~~pdg~~~~~l~t 486 (556)
......+++++||+++++++. ..+.+.++|.. .++++.+.. .+++.++..+ +... .++++
T Consensus 77 ---G~~~~~i~~s~DG~~~~v~n~----~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s--~~~~--~fVv~ 145 (369)
T PF02239_consen 77 ---GGNPRGIAVSPDGKYVYVANY----EPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVAS--PGRP--EFVVN 145 (369)
T ss_dssp ---SSEEEEEEE--TTTEEEEEEE----ETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE---SSSS--EEEEE
T ss_pred ---CCCcceEEEcCCCCEEEEEec----CCCceeEeccccccceeecccccccccccCCCceeEEec--CCCC--EEEEE
Confidence 677899999999999998876 68999999987 677777642 2467777777 5551 35555
Q ss_pred EeCCCeEEEEeCCCCeEE--EEecCCCCCCeEEEEEecCCCEEEEE-cCCCcEEEEEcCCCCCcCe
Q psy10778 487 GHSDGTIQLWSGYKLAHL--LTLNTNVALPVIAVTYSCDSQHLYAS-NTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 487 g~~dg~I~iwd~~~~~~~--~~~~~~h~~~V~~l~~s~dg~~l~sg-s~Dg~V~vwdl~~~~~~~~ 549 (556)
--+.+.|.+.|....+.+ ..+. .........|+|++++++++ ..+..|.++|.++++.+..
T Consensus 146 lkd~~~I~vVdy~d~~~~~~~~i~--~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~ 209 (369)
T PF02239_consen 146 LKDTGEIWVVDYSDPKNLKVTTIK--VGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVAL 209 (369)
T ss_dssp ETTTTEEEEEETTTSSCEEEEEEE----TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred EccCCeEEEEEeccccccceeeec--ccccccccccCcccceeeecccccceeEEEeeccceEEEE
Confidence 556689988897765533 3443 34677899999999987664 5667899999888655443
|
... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=99.08 E-value=1.8e-07 Score=94.69 Aligned_cols=225 Identities=9% Similarity=0.008 Sum_probs=153.2
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC----------CCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT----------SGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~----------Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.++|.+.|..+.+.+..+..+..... + ++|||+.|+++.. +..|.+||..+. +.+..+
T Consensus 26 ~~~v~ViD~~~~~v~g~i~~G~~P~~--~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~---------~~~~~i 93 (352)
T TIGR02658 26 TTQVYTIDGEAGRVLGMTDGGFLPNP--V-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTH---------LPIADI 93 (352)
T ss_pred CceEEEEECCCCEEEEEEEccCCCce--e-ECCCCCEEEEEeccccccccCCCCCEEEEEECccC---------cEEeEE
Confidence 38999999999988888876654433 4 8999999888755 789999999887 333444
Q ss_pred eCC-------CccEEEEEEccCCCEEEEEc-C-CCcEEEEeCCCCeEEEEeCCCCC----------------CCC-----
Q psy10778 372 LGH-------SACVTDLYLCAGFSVAVSSS-E-DGTCLLWDINTIGYIREIPCVDP----------------NTP----- 421 (556)
Q Consensus 372 ~~h-------~~~V~~l~~s~~~~~l~sgs-~-Dg~I~iwdl~~~~~v~~l~~~h~----------------~~~----- 421 (556)
..- ...-..++++|+|++++... . +..|.+.|+.+++.+.++..+.. ++.
T Consensus 94 ~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~ 173 (352)
T TIGR02658 94 ELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVG 173 (352)
T ss_pred ccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEE
Confidence 321 12234688999999888765 3 78999999999887776554100 000
Q ss_pred --------eeEEE--------------EeC-CCCeEEEEeecCcCCCCeEEEEEeCCc------EEEEee--------cC
Q psy10778 422 --------VSHVT--------------MSE-TNGEIASVLQTTKTGGSILRLHTINAQ------LITSLA--------SE 464 (556)
Q Consensus 422 --------V~~l~--------------~sp-~~~~i~s~s~~~~~~d~~I~iwdi~g~------~i~~~~--------~~ 464 (556)
..... +.+ +++.+.+. ..|.|.+.|+.+. .+..+. ..
T Consensus 174 ~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs------~eG~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP 247 (352)
T TIGR02658 174 YGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPT------YTGKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRP 247 (352)
T ss_pred ecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEe------cCCeEEEEecCCCcceecceeeeccccccccccCC
Confidence 00000 122 44444443 3488888886432 222211 12
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEe----------CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-EEEEEc-C
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGH----------SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-HLYASN-T 532 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs-~ 532 (556)
+.+.-++++ +++ +.+.+.. ..+.|.++|..+++.+..+.. ...+..++++||++ +|++.. .
T Consensus 248 ~g~q~ia~~--~dg---~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~v--G~~~~~iavS~Dgkp~lyvtn~~ 320 (352)
T TIGR02658 248 GGWQQVAYH--RAR---DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIEL--GHEIDSINVSQDAKPLLYALSTG 320 (352)
T ss_pred CcceeEEEc--CCC---CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeC--CCceeeEEECCCCCeEEEEeCCC
Confidence 333448888 787 5555532 225799999999999999984 46899999999999 888776 5
Q ss_pred CCcEEEEEcCCCCCcCeee
Q psy10778 533 EGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~~ 551 (556)
++.|.+.|..+++.+.++.
T Consensus 321 s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 321 DKTLYIFDAETGKELSSVN 339 (352)
T ss_pred CCcEEEEECcCCeEEeeec
Confidence 7889999999987776663
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=99.07 E-value=2.2e-08 Score=105.87 Aligned_cols=165 Identities=13% Similarity=0.048 Sum_probs=116.0
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSED---GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
+.+..+...+...+|+|+|+.|+.++.+ ..|.+||+.+++...... + ...+..++|+|+++.|+...... ..
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~--~-~~~~~~~~~spDg~~l~~~~~~~--~~ 257 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVAS--F-PGMNGAPAFSPDGSKLAVSLSKD--GN 257 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeec--C-CCCccceEECCCCCEEEEEECCC--CC
Confidence 5566677789999999999988876643 479999999876544333 3 45677899999999887654211 23
Q ss_pred CeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeC-CC--eEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 446 SILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHS-DG--TIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 446 ~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
..|++||+.+.....+ .+.......+|+ ++| +.|+..+. +| .|+++|+.+++.. .+. .+...+....|+
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s--~dg---~~l~~~s~~~g~~~iy~~d~~~~~~~-~l~-~~~~~~~~~~~s 330 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWS--PDG---KSIAFTSDRGGSPQIYMMDADGGEVR-RLT-FRGGYNASPSWS 330 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEEC--CCC---CEEEEEECCCCCceEEEEECCCCCEE-Eee-cCCCCccCeEEC
Confidence 4688899875444444 333444577899 888 66665543 33 5888888766643 333 234567788999
Q ss_pred cCCCEEEEEcCCC---cEEEEEcCCCC
Q psy10778 522 CDSQHLYASNTEG---LVIIWESSSHN 545 (556)
Q Consensus 522 ~dg~~l~sgs~Dg---~V~vwdl~~~~ 545 (556)
|+|++++.++.++ .|.+||+.++.
T Consensus 331 pdg~~i~~~~~~~~~~~i~~~d~~~~~ 357 (417)
T TIGR02800 331 PDGDLIAFVHREGGGFNIAVMDLDGGG 357 (417)
T ss_pred CCCCEEEEEEccCCceEEEEEeCCCCC
Confidence 9999999888776 78999987743
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >KOG4547|consensus | Back alignment and domain information |
|---|
Probab=99.04 E-value=2.4e-08 Score=102.84 Aligned_cols=190 Identities=16% Similarity=0.200 Sum_probs=146.5
Q ss_pred CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEc--------------------cCCCEEEEE
Q psy10778 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLC--------------------AGFSVAVSS 393 (556)
Q Consensus 334 ~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--------------------~~~~~l~sg 393 (556)
|...++|....||.+++|+...+..... ..+...+ .+..++..|. .+...++-|
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e---~~p~~~~---s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlg 76 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQE---FAPIASL---SGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLG 76 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeee---eccchhc---cCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEee
Confidence 4467899999999999999887622111 1122222 2223333332 123477888
Q ss_pred cCCCcEEEEeCCCCeEEEEeC-CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEE
Q psy10778 394 SEDGTCLLWDINTIGYIREIP-CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSV 470 (556)
Q Consensus 394 s~Dg~I~iwdl~~~~~v~~l~-~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i 470 (556)
...|.|.++++..|+.-+.+. +.| .+.|.++.++.+-+.|.+++ .|..+..|+.. ++.++... ....+.++
T Consensus 77 t~~g~v~~ys~~~g~it~~~st~~h-~~~v~~~~~~~~~~ciyS~~-----ad~~v~~~~~~~~~~~~~~~~~~~~~~sl 150 (541)
T KOG4547|consen 77 TPQGSVLLYSVAGGEITAKLSTDKH-YGNVNEILDAQRLGCIYSVG-----ADLKVVYILEKEKVIIRIWKEQKPLVSSL 150 (541)
T ss_pred cCCccEEEEEecCCeEEEEEecCCC-CCcceeeecccccCceEecC-----CceeEEEEecccceeeeeeccCCCccceE
Confidence 999999999999998888776 237 78999999999999999998 89999999997 66666665 45788999
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecC-----CCEEEE-EcCCCcEEEEEcCC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD-----SQHLYA-SNTEGLVIIWESSS 543 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d-----g~~l~s-gs~Dg~V~vwdl~~ 543 (556)
+.+ ||| ..+++++ +.|++||+.+++.+..+. +|.++|+++.|..+ |.++++ ...+.-+.+|-+..
T Consensus 151 ~is--~D~---~~l~~as--~~ik~~~~~~kevv~~ft-gh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 151 CIS--PDG---KILLTAS--RQIKVLDIETKEVVITFT-GHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEc--CCC---CEEEecc--ceEEEEEccCceEEEEec-CCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999 888 8999887 689999999999999999 99999999999987 666655 44556678888766
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.2e-09 Score=107.82 Aligned_cols=235 Identities=14% Similarity=0.101 Sum_probs=169.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+++|+.|..|.+||-..+.....+..+|...|-...|.|. .+.+++++.||.+++=.+...+ .. +-...+.
T Consensus 156 ~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~i~~t~---~~---e~t~rl~ 229 (559)
T KOG1334|consen 156 VLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSEILETG---YV---ENTKRLA 229 (559)
T ss_pred eeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeeeecccc---ce---ecceecc
Confidence 89999999999999999888888888899988888888774 4679999999999997775431 11 2235566
Q ss_pred CCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEE----------------e----------------------
Q psy10778 373 GHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIRE----------------I---------------------- 413 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~----------------l---------------------- 413 (556)
.|.++|.-++.-|+.. .+.|++.|+.+.-.|++++..... +
T Consensus 230 ~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvY 309 (559)
T KOG1334|consen 230 PHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVY 309 (559)
T ss_pred cccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCccccccCChhhhhhhh
Confidence 7888888888877654 577777777777777654311000 0
Q ss_pred -----------------CCCC----CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---C----------cEEE
Q psy10778 414 -----------------PCVD----PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN---A----------QLIT 459 (556)
Q Consensus 414 -----------------~~~h----~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g----------~~i~ 459 (556)
...| ....|++++++.++.-+++.- .|-.|+++.-+ | ..+.
T Consensus 310 D~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSY-----nDe~IYLF~~~~~~G~~p~~~s~~~~~~k 384 (559)
T KOG1334|consen 310 DQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASY-----NDEDIYLFNKSMGDGSEPDPSSPREQYVK 384 (559)
T ss_pred cccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeee-----cccceEEeccccccCCCCCCCcchhhccc
Confidence 0000 023478888886666555554 56778888543 3 1222
Q ss_pred E-ee-c--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCc
Q psy10778 460 S-LA-S--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGL 535 (556)
Q Consensus 460 ~-~~-~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 535 (556)
. ++ | ...|.++-|-- |.. .++++|+.=|.|.||+-.+++.+..+. +...-|.|+.=+|.-..||+++-|..
T Consensus 385 ~vYKGHrN~~TVKgVNFfG-Prs---EyVvSGSDCGhIFiW~K~t~eii~~Me-gDr~VVNCLEpHP~~PvLAsSGid~D 459 (559)
T KOG1334|consen 385 RVYKGHRNSRTVKGVNFFG-PRS---EYVVSGSDCGHIFIWDKKTGEIIRFME-GDRHVVNCLEPHPHLPVLASSGIDHD 459 (559)
T ss_pred hhhcccccccccceeeecc-Ccc---ceEEecCccceEEEEecchhHHHHHhh-cccceEeccCCCCCCchhhccCCccc
Confidence 2 22 2 34577887762 444 899999999999999999999999888 44458999999999999999999999
Q ss_pred EEEEEcCCCC
Q psy10778 536 VIIWESSSHN 545 (556)
Q Consensus 536 V~vwdl~~~~ 545 (556)
|+||...+.+
T Consensus 460 VKIWTP~~~e 469 (559)
T KOG1334|consen 460 VKIWTPLTAE 469 (559)
T ss_pred eeeecCCccc
Confidence 9999985533
|
|
| >KOG1064|consensus | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.1e-09 Score=124.06 Aligned_cols=180 Identities=16% Similarity=0.223 Sum_probs=145.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+..+|+.||++++|.-..+..+...+..-...|+.+.|+.+|+.+..+..||.+.+|.... ++....+.|
T Consensus 2222 ~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~p----------k~~~s~qch 2291 (2439)
T KOG1064|consen 2222 YYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASP----------KPYTSWQCH 2291 (2439)
T ss_pred eEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCC----------cceeccccC
Confidence 7778999999999988877766666655558999999999999999999999999999873 456777889
Q ss_pred CccEEEEEEccCCCEEEEEc---CCCcEEEEeCCCC--e-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 375 SACVTDLYLCAGFSVAVSSS---EDGTCLLWDINTI--G-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs---~Dg~I~iwdl~~~--~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
....++..|-. ..+++++ .++.+.+||..-. . ++. .+ | .+.++++++.|....+++|+ ++|.|
T Consensus 2292 nk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~--~~-H-~~gaT~l~~~P~~qllisgg-----r~G~v 2360 (2439)
T KOG1064|consen 2292 NKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH--TC-H-DGGATVLAYAPKHQLLISGG-----RKGEV 2360 (2439)
T ss_pred Cccccceeeee--hhhhccccCCCCCcccchhcccCcccceee--ee-c-CCCceEEEEcCcceEEEecC-----CcCcE
Confidence 98888888875 5666654 5789999996532 2 233 66 8 89999999999999999999 99999
Q ss_pred EEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 449 RLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
++||++ .+++++++. +. .. .++++|+..|.++||++..-..+.++..
T Consensus 2361 ~l~D~rqrql~h~~~~--------~~---~~---~~f~~~ss~g~ikIw~~s~~~ll~~~p~ 2408 (2439)
T KOG1064|consen 2361 CLFDIRQRQLRHTFQA--------LD---TR---EYFVTGSSEGNIKIWRLSEFGLLHTFPS 2408 (2439)
T ss_pred EEeehHHHHHHHHhhh--------hh---hh---heeeccCcccceEEEEccccchhhcCch
Confidence 999998 455554433 22 12 6899999999999999988888887764
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=99.01 E-value=3.4e-07 Score=106.46 Aligned_cols=231 Identities=9% Similarity=-0.019 Sum_probs=150.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-C------------CCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-P------------LGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~------------h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~ 360 (556)
+.++.+..+.|++++..+. ....+.. + .......++++++++.|+++. ..+.|+++|..++.
T Consensus 582 lyVaDs~n~rI~v~d~~G~-~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~--- 657 (1057)
T PLN02919 582 LFISDSNHNRIVVTDLDGN-FIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALREIDFVNET--- 657 (1057)
T ss_pred EEEEECCCCeEEEEeCCCC-EEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEEEEecCCCE---
Confidence 5556667778888887543 2222211 1 122357889998888766654 45678888875431
Q ss_pred cccccCCCeEeeC----------C-------CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC------
Q psy10778 361 KIEFCKPPTILLG----------H-------SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCV------ 416 (556)
Q Consensus 361 ~~~~~~~~~~l~~----------h-------~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~------ 416 (556)
+.++.+ . -..-.+++++| ++.+.++.+.++.|++||..++... .+.+.
T Consensus 658 -------V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~-~~~G~G~~~~~ 729 (1057)
T PLN02919 658 -------VRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR-VFSGDGYERNL 729 (1057)
T ss_pred -------EEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE-EEecCCccccC
Confidence 111111 0 11235789999 5667788888999999999876432 22110
Q ss_pred --C-----CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee--------------c--------CCC
Q psy10778 417 --D-----PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA--------------S--------ELR 466 (556)
Q Consensus 417 --h-----~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~--------------~--------~~~ 466 (556)
+ .-.....|+++|+++.|+++.. .++.|++||++ +....... . -..
T Consensus 730 ~g~~~~~~~~~~P~GIavspdG~~LYVADs----~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 730 NGSSGTSTSFAQPSGISLSPDLKELYIADS----ESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred CCCccccccccCccEEEEeCCCCEEEEEEC----CCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0 0123567999999986665543 67899999986 33211100 0 013
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC------------CCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN------------VALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
..+++++ ++| +++++...++.|++||..++........+ .-.....++++++|+.+++.+.++
T Consensus 806 P~Gvavd--~dG---~LYVADs~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn 880 (1057)
T PLN02919 806 PLGVLCA--KDG---QIYVADSYNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNS 880 (1057)
T ss_pred CceeeEe--CCC---cEEEEECCCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCC
Confidence 4688888 888 78888889999999998776654333211 123578999999999999999999
Q ss_pred cEEEEEcCCCCC
Q psy10778 535 LVIIWESSSHNR 546 (556)
Q Consensus 535 ~V~vwdl~~~~~ 546 (556)
+|++||+.+++.
T Consensus 881 ~Irvid~~~~~~ 892 (1057)
T PLN02919 881 LIRYLDLNKGEA 892 (1057)
T ss_pred EEEEEECCCCcc
Confidence 999999988654
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.99 E-value=1.8e-07 Score=95.98 Aligned_cols=220 Identities=15% Similarity=0.174 Sum_probs=152.2
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC--EEEE-----EeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH--TLWL-----GLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~--~l~t-----gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
..+.+.+|+..+-+... ..-|...|+.++++|.+. .+|+ +|.-+.|+||.+......... ..+++
T Consensus 144 v~nev~f~~~~~f~~~~--~kl~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~----a~ksF-- 215 (566)
T KOG2315|consen 144 VSNEVQFYDLGSFKTIQ--HKLSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPV----ANKSF-- 215 (566)
T ss_pred hcceEEEEecCCcccee--eeeeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchh----hhccc--
Confidence 35678888887633221 123678899999998733 3443 244567999998733111110 01111
Q ss_pred CCccEEEEEEccCCC-EEEEEc--CC---------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 374 HSACVTDLYLCAGFS-VAVSSS--ED---------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 374 h~~~V~~l~~s~~~~-~l~sgs--~D---------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
....=..+.|++-|. +|+.++ -| .++++.++........+.. .++|.++.|++++..++++..-
T Consensus 216 Fkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k---~GPVhdv~W~~s~~EF~VvyGf- 291 (566)
T KOG2315|consen 216 FKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK---EGPVHDVTWSPSGREFAVVYGF- 291 (566)
T ss_pred cccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC---CCCceEEEECCCCCEEEEEEec-
Confidence 122234577887766 333222 23 4688888885556666776 7999999999999888766421
Q ss_pred cCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCCeEEE
Q psy10778 442 KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLLTLNTNVALPVIAV 518 (556)
Q Consensus 442 ~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 518 (556)
.-..+.+||+++.++..+. +++=+++-|+ |.| ++|+.++- .|.+-+||+.+.+++..+. . ..-+-.
T Consensus 292 --MPAkvtifnlr~~~v~df~-egpRN~~~fn--p~g---~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~-a--~~tt~~ 360 (566)
T KOG2315|consen 292 --MPAKVTIFNLRGKPVFDFP-EGPRNTAFFN--PHG---NIILLAGFGNLPGDMEVWDVPNRKLIAKFK-A--ANTTVF 360 (566)
T ss_pred --ccceEEEEcCCCCEeEeCC-CCCccceEEC--CCC---CEEEEeecCCCCCceEEEeccchhhccccc-c--CCceEE
Confidence 4568999999999988873 4556788999 889 88877663 4899999999999988887 2 345667
Q ss_pred EEecCCCEEEEEcC------CCcEEEEEcCC
Q psy10778 519 TYSCDSQHLYASNT------EGLVIIWESSS 543 (556)
Q Consensus 519 ~~s~dg~~l~sgs~------Dg~V~vwdl~~ 543 (556)
.|+|||++++|++. |+.++||+...
T Consensus 361 eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 361 EWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred EEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 99999999998875 67899999865
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.97 E-value=1.3e-07 Score=99.93 Aligned_cols=204 Identities=14% Similarity=0.030 Sum_probs=125.6
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CC--cE--EEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SG--NI--LVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg--~I--~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
...|.+.++.+++...+.. ..+.....+|+|||+.|+..+. +| .+ ..|++..+. .+ .......++..
T Consensus 210 ~~~I~~~~l~~g~~~~lt~--~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~-~g-----~~~~lt~~~~~ 281 (428)
T PRK01029 210 VPKIFLGSLENPAGKKILA--LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGA-IG-----KPRRLLNEAFG 281 (428)
T ss_pred CceEEEEECCCCCceEeec--CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCC-CC-----cceEeecCCCC
Confidence 3467778888776554443 3344557899999998887653 33 23 335554320 00 11222223334
Q ss_pred cEEEEEEccCCCEEEEEc-CCCcEEEE--eCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 377 CVTDLYLCAGFSVAVSSS-EDGTCLLW--DINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs-~Dg~I~iw--dl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.....+|+|||+.|+..+ .+|...+| ++.. +...+.+.. + ...+...+|+|||+.|+..+... ....|.+||
T Consensus 282 ~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~-~-~~~~~~p~wSPDG~~Laf~~~~~--g~~~I~v~d 357 (428)
T PRK01029 282 TQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTK-K-YRNSSCPAWSPDGKKIAFCSVIK--GVRQICVYD 357 (428)
T ss_pred CcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEecc-C-CCCccceeECCCCCEEEEEEcCC--CCcEEEEEE
Confidence 456789999999777655 56765555 4432 233455554 4 45678899999999999876321 235799999
Q ss_pred eCCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEE-EeC--CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 453 INAQLITSLA-SELRITSVTFSNAPEGVSQNVIVT-GHS--DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 453 i~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~t-g~~--dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
+.+.....+. ....+....|+ |+| +.|+. +.. ...|+++|+..++...... ..+.+...+|+|-.
T Consensus 358 l~~g~~~~Lt~~~~~~~~p~wS--pDG---~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~--~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 358 LATGRDYQLTTSPENKESPSWA--IDS---LHLVYSAGNSNESELYLISLITKKTRKIVI--GSGEKRFPSWGAFP 426 (428)
T ss_pred CCCCCeEEccCCCCCccceEEC--CCC---CEEEEEECCCCCceEEEEECCCCCEEEeec--CCCcccCceecCCC
Confidence 9744334443 33466789999 888 66654 332 3568888987766544433 34556778888743
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.97 E-value=2.1e-06 Score=88.34 Aligned_cols=228 Identities=13% Similarity=0.144 Sum_probs=147.6
Q ss_pred CCCeEEEEeCCCC--CCcceEcCC-CCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEe-----
Q psy10778 301 CDNLIRLKMSKEL--PATPVIRPP-LGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTIL----- 371 (556)
Q Consensus 301 ~Dg~I~lw~~~~~--~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l----- 371 (556)
.+|.|..|.+... .+...-... .......+++++++++|+++. .+|.|.++++.......... .....
T Consensus 60 ~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~---~~~~~~g~g~ 136 (345)
T PF10282_consen 60 DSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVV---QTVRHEGSGP 136 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEE---EEEESEEEES
T ss_pred CCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceee---eecccCCCCC
Confidence 5678888877653 322222111 234556899999999999986 58999999998642111110 00000
Q ss_pred ---eCCCccEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCe--E--EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 372 ---LGHSACVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIG--Y--IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 372 ---~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~--~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
..-.....++.++|+++++++.. ....|.+|++.... . ...+..+. ....+.++|+|+++++.+...
T Consensus 137 ~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~-G~GPRh~~f~pdg~~~Yv~~e---- 211 (345)
T PF10282_consen 137 NPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPP-GSGPRHLAFSPDGKYAYVVNE---- 211 (345)
T ss_dssp STTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECST-TSSEEEEEE-TTSSEEEEEET----
T ss_pred cccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeecccccc-CCCCcEEEEcCCcCEEEEecC----
Confidence 01234578899999999777654 34579999987654 3 22333313 678999999999999988774
Q ss_pred CCCeEEEEEeC---Cc--EEEEeec-------CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCC--CC--eEEEE
Q psy10778 444 GGSILRLHTIN---AQ--LITSLAS-------ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY--KL--AHLLT 506 (556)
Q Consensus 444 ~d~~I~iwdi~---g~--~i~~~~~-------~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~--~~--~~~~~ 506 (556)
.++.|.+++++ |. .+..... ......|+++ |+| ++|.++. ..+.|.+|++. ++ +.+..
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~is--pdg---~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~ 286 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAIS--PDG---RFLYVSNRGSNSISVFDLDPATGTLTLVQT 286 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE---TTS---SEEEEEECTTTEEEEEEECTTTTTEEEEEE
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEe--cCC---CEEEEEeccCCEEEEEEEecCCCceEEEEE
Confidence 78899999986 32 2222221 1267889999 999 6666655 66789999983 23 34445
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcC
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~ 542 (556)
+.. .....+.++++|+|++|+++. .++.|.+|++.
T Consensus 287 ~~~-~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 287 VPT-GGKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EEE-SSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EeC-CCCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 542 235589999999999999876 56789999885
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.2e-08 Score=93.01 Aligned_cols=231 Identities=10% Similarity=0.037 Sum_probs=158.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC--CC---CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP--PL---GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~--~h---~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.++-+..+|.|.++..........+.. .- .....++.|++.+..++++..+|.+.+-+.... ..+.++
T Consensus 87 ~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~-------~le~vq 159 (339)
T KOG0280|consen 87 NLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEALSLDISTSGTKIFVSDSRGSISGVYETEM-------VLEKVQ 159 (339)
T ss_pred eeeeccccceEEEEeeccceeeeeecccchhhhhheeeeEEEeeccCceEEEEcCCCcEEEEeccee-------eeeecc
Confidence 455567788888887653322211110 00 012457788899999999999999985443332 124456
Q ss_pred EeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCC-CCeEEEE-eCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCC
Q psy10778 370 ILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDIN-TIGYIRE-IPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGG 445 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~-~~~~v~~-l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d 445 (556)
.++.|.-+.+...|+.. -+++.+|++||.+..||++ .++.+.. .+. | ...|.+|.-+|. +.+|++|+ .|
T Consensus 160 ~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kv-H-~~GV~SI~ss~~~~~~I~TGs-----YD 232 (339)
T KOG0280|consen 160 TWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKV-H-TSGVVSIYSSPPKPTYIATGS-----YD 232 (339)
T ss_pred cccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeeccee-e-ecceEEEecCCCCCceEEEec-----cc
Confidence 88999999999999864 3589999999999999999 4455544 444 7 788999988864 67889998 89
Q ss_pred CeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-----EEEEecCCCCCCeEEE
Q psy10778 446 SILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-----HLLTLNTNVALPVIAV 518 (556)
Q Consensus 446 ~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-----~~~~~~~~h~~~V~~l 518 (556)
-.|++||.+ ++++..-+..+.|..+.++|...+ .+|+++..+| .+|-+..... ...... .|.+-+..-
T Consensus 233 e~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~---~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~-~hdSl~YG~ 307 (339)
T KOG0280|consen 233 ECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFH---RLLAACMHNG-AKILDSSDKVLEFQIVLPSDK-IHDSLCYGG 307 (339)
T ss_pred cceeeeehhcccCccccCccccceEEEEecchhhh---HHHHHHHhcC-ceEEEecccccchheeeeccc-cccceeecc
Confidence 999999998 888888778899999999943333 4455555444 4666654332 222232 667777777
Q ss_pred EEecCCCEEEEEc-CCCcEE-EEEcCCC
Q psy10778 519 TYSCDSQHLYASN-TEGLVI-IWESSSH 544 (556)
Q Consensus 519 ~~s~dg~~l~sgs-~Dg~V~-vwdl~~~ 544 (556)
.|......|++++ -|+.++ +|-.-++
T Consensus 308 DWd~~~~~lATCsFYDk~~~~~Wl~~t~ 335 (339)
T KOG0280|consen 308 DWDSKDSFLATCSFYDKKIRQLWLHITG 335 (339)
T ss_pred ccccccceeeeeeccccceeeeeeeccC
Confidence 7755556788765 466644 7765543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.95 E-value=1.3e-06 Score=89.95 Aligned_cols=227 Identities=14% Similarity=0.140 Sum_probs=147.2
Q ss_pred CeEEEEeC--CCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC----CCcEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 303 NLIRLKMS--KELPATPVIRPPLGATIATATTAPDCHTLWLGLT----SGNILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 303 g~I~lw~~--~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~----Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
+.|+++.+ +++++...-..........++++|++++|+++.+ +|.|..|++.... +.. +.+........
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~--g~L---~~~~~~~~~g~ 87 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT--GTL---TLLNSVPSGGS 87 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT--TEE---EEEEEEEESSS
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc--cee---EEeeeeccCCC
Confidence 67777776 4443332222223345667889999999999976 5689999887531 111 22233333444
Q ss_pred cEEEEEEccCCCEEEEEc-CCCcEEEEeCCC-CeEEEE---eC----CC----CCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 377 CVTDLYLCAGFSVAVSSS-EDGTCLLWDINT-IGYIRE---IP----CV----DPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~-~~~v~~---l~----~~----h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
....++++++++.|+++. .+|++.++++.. +..... +. ++ .......++.++|+++++++...
T Consensus 88 ~p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dl---- 163 (345)
T PF10282_consen 88 SPCHIAVDPDGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDL---- 163 (345)
T ss_dssp CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEET----
T ss_pred CcEEEEEecCCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEec----
Confidence 566799999999888776 589999999987 433221 21 00 00355789999999999888763
Q ss_pred CCCeEEEEEeC-C--cEEE--Ee--ecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCC--CCe--EEEEecC--
Q psy10778 444 GGSILRLHTIN-A--QLIT--SL--ASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGY--KLA--HLLTLNT-- 509 (556)
Q Consensus 444 ~d~~I~iwdi~-g--~~i~--~~--~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~--~~~--~~~~~~~-- 509 (556)
....|.+|+++ . ++.. .+ ......+.++|+ |++ +++ ++.-.++.|.++++. +++ .+..+..
T Consensus 164 G~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~--pdg---~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~ 238 (345)
T PF10282_consen 164 GADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFS--PDG---KYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP 238 (345)
T ss_dssp TTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE---TTS---SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE
T ss_pred CCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEc--CCc---CEEEEecCCCCcEEEEeecccCCceeEEEEeeecc
Confidence 45689999996 2 2322 22 346788999999 888 555 455567889999887 332 3333332
Q ss_pred -CC--CCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCC
Q psy10778 510 -NV--ALPVIAVTYSCDSQHLYASNT-EGLVIIWESSS 543 (556)
Q Consensus 510 -~h--~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~ 543 (556)
+. ......|+++|||++|+++.. .+.|.+|++..
T Consensus 239 ~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~ 276 (345)
T PF10282_consen 239 EGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDP 276 (345)
T ss_dssp TTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECT
T ss_pred ccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEec
Confidence 11 236889999999999887664 56899999944
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=5.3e-07 Score=84.64 Aligned_cols=232 Identities=9% Similarity=0.013 Sum_probs=160.9
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.+|+.|+..|.+.+|...+.+....+...|...|+-+.-.. ....+..++.|.++++.+++.+. ....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s-----------~~~~ 153 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDS-----------NKFA 153 (344)
T ss_pred cEEEeccccceeeeecccCcccceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCc-----------ccce
Confidence 38999999999999999866544333334544444332111 23356778889999999988652 1122
Q ss_pred CCCcc--EEEEEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 373 GHSAC--VTDLYLCAGFSVAVSSSEDGTCLLWDINTI-GYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 373 ~h~~~--V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.|... +.+++++++++++++.+....|-.|.+... +++.. ...+. ...-.+..|+.....+|++. .||++
T Consensus 154 ~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t-~D~gF~~S~s~~~~~FAv~~-----Qdg~~ 227 (344)
T KOG4532|consen 154 VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT-SDHGFYNSFSENDLQFAVVF-----QDGTC 227 (344)
T ss_pred eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEeccc-CCCceeeeeccCcceEEEEe-----cCCcE
Confidence 23333 788999999999999999999999988753 33322 22212 45567889999999999999 89999
Q ss_pred EEEEeC--CcEEEEe-----ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CC-CCC
Q psy10778 449 RLHTIN--AQLITSL-----ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NV-ALP 514 (556)
Q Consensus 449 ~iwdi~--g~~i~~~-----~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h-~~~ 514 (556)
.|||++ +.+.... .|.+.++.+.|+ +-|. ..+|...-.-+.+.+.|+++++-...+.. .| ...
T Consensus 228 ~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fs--l~g~-lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ 304 (344)
T KOG4532|consen 228 AIYDVRNMATPMAEISSTRPHHNGAFRVCRFS--LYGL-LDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQH 304 (344)
T ss_pred EEEEecccccchhhhcccCCCCCCceEEEEec--CCCc-ceEEEEecCcceEEEEEcccCceeeEEecCccccccccccc
Confidence 999997 4444433 367899999999 5441 25666666678899999999876554432 22 234
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|....|+.++..+.+.+++ .+.-|++.++.+
T Consensus 305 ifgt~f~~~n~s~~v~~e~-~~ae~ni~srsR 335 (344)
T KOG4532|consen 305 IFGTNFNNENESNDVKNEL-QGAEYNILSRSR 335 (344)
T ss_pred cccccccCCCcccccccch-hhheeeccccce
Confidence 8888898888777776655 466677766443
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.6e-08 Score=95.23 Aligned_cols=206 Identities=18% Similarity=0.209 Sum_probs=142.5
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC------------ccEEEEEEccCCC--
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS------------ACVTDLYLCAGFS-- 388 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~------------~~V~~l~~s~~~~-- 388 (556)
..+-|.++.|...|.+||||..+|.|.++.-..... + +......++.|. ..|..+.|.+++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~-~---ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a 99 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYK-G---EYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLA 99 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccc-c---ceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCcc
Confidence 456789999999999999999999999987554311 1 112233444554 3588899998765
Q ss_pred EEEEEcCCCcEEEEeCCCCe-----------------------------------EEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 389 VAVSSSEDGTCLLWDINTIG-----------------------------------YIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~-----------------------------------~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
.++..+.|.+|++|.+.... +.+.+...| .-.|.++.++.|...
T Consensus 100 ~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH-tyhiNSIS~NsD~Et 178 (433)
T KOG1354|consen 100 EFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH-TYHINSISVNSDKET 178 (433)
T ss_pred EEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc-eeEeeeeeecCccce
Confidence 56667889999999875321 011222225 567899999999999
Q ss_pred EEEEeecCcCCCCeEEEEEeC--CcE--EEEe-ec-----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 434 IASVLQTTKTGGSILRLHTIN--AQL--ITSL-AS-----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~--g~~--i~~~-~~-----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
++++ .|-.|.+|++. .+. +.-+ .+ ..-|++..|+ |... ++++-.++.|+|++-|++...+
T Consensus 179 ~lSA------DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFh--p~~c--n~f~YSSSKGtIrLcDmR~~aL 248 (433)
T KOG1354|consen 179 FLSA------DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFH--PHHC--NVFVYSSSKGTIRLCDMRQSAL 248 (433)
T ss_pred Eeec------cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccC--HhHc--cEEEEecCCCcEEEeechhhhh
Confidence 9987 58899999985 222 2222 22 3568899999 4332 7888889999999999985332
Q ss_pred EE----Eec---C--------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 504 LL----TLN---T--------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 504 ~~----~~~---~--------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.. .+. . .--..|..+.|+++|+++++-+- -+|++||+.-.
T Consensus 249 Cd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme 303 (433)
T KOG1354|consen 249 CDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNME 303 (433)
T ss_pred hcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEecccc
Confidence 11 111 0 11356889999999999986542 58999999553
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.3e-07 Score=97.42 Aligned_cols=165 Identities=12% Similarity=0.013 Sum_probs=110.6
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCC---CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSED---GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~D---g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
+.+..+...+...+|+|+|+.|+..+.+ ..|.+||+.+++..+ +.. . .+.+...+|+|+|+.|+...... .+
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~-~-~g~~~~~~~SpDG~~la~~~~~~--g~ 266 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITN-F-EGLNGAPAWSPDGSKLAFVLSKD--GN 266 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccC-C-CCCcCCeEECCCCCEEEEEEccC--CC
Confidence 5566777889999999999988776543 368899999876544 333 2 44566799999999988654311 23
Q ss_pred CeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 446 SILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGH-SDG--TIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 446 ~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
..|+++|+.+.....+ .+........|+ |+| +.|+..+ .+| .|+++++.+++...... .........|+
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~s--pDg---~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~--~~~~~~~~~~S 339 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWG--KDG---RTLYFTSDRGGKPQIYKVNVNGGRAERVTF--VGNYNARPRLS 339 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEEC--CCC---CEEEEEECCCCCceEEEEECCCCCEEEeec--CCCCccceEEC
Confidence 4788889985444444 334456678899 888 5555444 333 57777887776433222 12233467899
Q ss_pred cCCCEEEEEcCC-C--cEEEEEcCCCC
Q psy10778 522 CDSQHLYASNTE-G--LVIIWESSSHN 545 (556)
Q Consensus 522 ~dg~~l~sgs~D-g--~V~vwdl~~~~ 545 (556)
|||+.|+..+.+ | .|.+||+.+++
T Consensus 340 pdg~~i~~~~~~~~~~~l~~~dl~tg~ 366 (430)
T PRK00178 340 ADGKTLVMVHRQDGNFHVAAQDLQRGS 366 (430)
T ss_pred CCCCEEEEEEccCCceEEEEEECCCCC
Confidence 999998876643 3 58889988754
|
|
| >KOG0280|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=1.1e-07 Score=90.32 Aligned_cols=225 Identities=15% Similarity=0.073 Sum_probs=150.8
Q ss_pred CCeEEEEeCCCCCCcc--eEcCCCCCceEEEEEcC---CCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC
Q psy10778 302 DNLIRLKMSKELPATP--VIRPPLGATIATATTAP---DCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS 375 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~--~~~~~h~~~V~~i~~s~---dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~ 375 (556)
.|.+.+++++..+..+ .++....+.+..+.|+- +|. .++-+..+|.|.++........... +++....-..
T Consensus 45 ~Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L---~~ls~~ki~~ 121 (339)
T KOG0280|consen 45 SGKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHL---RGLSSKKISV 121 (339)
T ss_pred ccceEEEeecccccCccceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeee---cccchhhhhh
Confidence 4678888887665544 22223345566676752 445 5677788899999987654211111 1111111111
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE--EEEeCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY--IREIPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~--v~~l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwd 452 (556)
....++.|++.+..++++..+|.+.+-+...... ++.++. | .-++...+|+... +.+.+|+ .|+.+..||
T Consensus 122 ~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~-H-e~E~Wta~f~~~~pnlvytGg-----DD~~l~~~D 194 (339)
T KOG0280|consen 122 VEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKV-H-EFEAWTAKFSDKEPNLVYTGG-----DDGSLSCWD 194 (339)
T ss_pred eeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccc-c-ceeeeeeecccCCCceEEecC-----CCceEEEEE
Confidence 2345788999999999999999999766555433 447888 8 8888888888654 4566777 899999999
Q ss_pred eC--CcEEEE--eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCCeEEEEEecCC--C
Q psy10778 453 IN--AQLITS--LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVALPVIAVTYSCDS--Q 525 (556)
Q Consensus 453 i~--g~~i~~--~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~s~dg--~ 525 (556)
++ ++.+.+ ..|...|.+|.-++ |.+ .+|+||+.|-.|++||.+ -++++..-. ..+.|+.+.++|.- +
T Consensus 195 ~R~p~~~i~~n~kvH~~GV~SI~ss~-~~~---~~I~TGsYDe~i~~~DtRnm~kPl~~~~--v~GGVWRi~~~p~~~~~ 268 (339)
T KOG0280|consen 195 IRIPKTFIWHNSKVHTSGVVSIYSSP-PKP---TYIATGSYDECIRVLDTRNMGKPLFKAK--VGGGVWRIKHHPEIFHR 268 (339)
T ss_pred ecCCcceeeecceeeecceEEEecCC-CCC---ceEEEeccccceeeeehhcccCccccCc--cccceEEEEecchhhhH
Confidence 98 444433 34788999998884 555 799999999999999998 466665554 35889999999853 3
Q ss_pred EEEEEcCCCcEEEEEcCC
Q psy10778 526 HLYASNTEGLVIIWESSS 543 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl~~ 543 (556)
.|+++-.+| .+|-+..+
T Consensus 269 lL~~CMh~G-~ki~~~~~ 285 (339)
T KOG0280|consen 269 LLAACMHNG-AKILDSSD 285 (339)
T ss_pred HHHHHHhcC-ceEEEecc
Confidence 333333333 44444443
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.87 E-value=2.2e-08 Score=104.64 Aligned_cols=205 Identities=11% Similarity=0.158 Sum_probs=138.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc------ccCCCeEeeCCCccEEEEEEccCCCEEEEEcC
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE------FCKPPTILLGHSACVTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~ 395 (556)
.......|++|+....++|+|+.||.++|..+.+.....+.. +...-+++.||...|.-+.|+...+.|-|+..
T Consensus 12 PnnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt 91 (1189)
T KOG2041|consen 12 PNNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDT 91 (1189)
T ss_pred CCCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCC
Confidence 345568899999999999999999999999987654332221 12344678999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec------------
Q psy10778 396 DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS------------ 463 (556)
Q Consensus 396 Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~------------ 463 (556)
+|.|.+|-+-.|.....+......+.|.+++|+.+|..|+..- .||.|.+=.++|..+.-...
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvY-----eDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~ 166 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVY-----EDGAVIVGSVDGNRIWGKELKGQLLAHVLWSE 166 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEE-----ccCCEEEEeeccceecchhcchheccceeecc
Confidence 9999999998776543322101157899999999999998887 77777665554332211100
Q ss_pred ------------------------------------------CCCeEEEEEeeCCCC---CcceEEEEEeCCCeEEEEeC
Q psy10778 464 ------------------------------------------ELRITSVTFSNAPEG---VSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 464 ------------------------------------------~~~i~~i~~s~~pdg---~~~~~l~tg~~dg~I~iwd~ 498 (556)
...|..+.|...|.+ .....|+++-.+|.+.+..-
T Consensus 167 D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~ 246 (1189)
T KOG2041|consen 167 DLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRS 246 (1189)
T ss_pred cHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhh
Confidence 011233344321111 01156777777777766654
Q ss_pred CCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 499 YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 499 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
.+......+. ..-.+..+.|+++|..|++++.+
T Consensus 247 eND~~Pvv~d--tgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 247 ENDPEPVVVD--TGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred cCCCCCeEEe--cccEeecceecCCCcEEEEccCc
Confidence 3333333333 13568889999999999988865
|
|
| >KOG4532|consensus | Back alignment and domain information |
|---|
Probab=98.86 E-value=2.9e-07 Score=86.32 Aligned_cols=196 Identities=14% Similarity=0.030 Sum_probs=132.0
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEe
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREI 413 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l 413 (556)
...+||.|+..|...+|...+.. ........|...|+-+.=..+ ...+..++.|.++++.++.-+..-..+
T Consensus 83 kc~~la~gG~~g~fd~~~~~tn~--------~h~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~~~ 154 (344)
T KOG4532|consen 83 KCVTLADGGASGQFDLFACNTND--------GHLYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKFAV 154 (344)
T ss_pred cccEEEeccccceeeeecccCcc--------cceeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCccccee
Confidence 45689999999999999988652 122333334433332211111 124556678888888887644322222
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEe
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGH 488 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~ 488 (556)
.. . .-.+.+++++++++++++.+ ....|-.|.+. ++.+... ...+.-.+..|+ ... ..+|++.
T Consensus 155 h~-~-~~~~ns~~~snd~~~~~~Vg-----ds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s--~~~---~~FAv~~ 222 (344)
T KOG4532|consen 155 HN-Q-NLTQNSLHYSNDPSWGSSVG-----DSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFS--END---LQFAVVF 222 (344)
T ss_pred ec-c-ccceeeeEEcCCCceEEEec-----CCCcceEEEeCCccceeeeeEecccCCCceeeeec--cCc---ceEEEEe
Confidence 21 1 23478999999999999998 78899999986 4433322 234566778888 555 6899999
Q ss_pred CCCeEEEEeCCCCeEEEE-e---cCCCCCCeEEEEEecCC--CEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 489 SDGTIQLWSGYKLAHLLT-L---NTNVALPVIAVTYSCDS--QHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~-~---~~~h~~~V~~l~~s~dg--~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
.||.+.|||++....... . ...|.+.++.+.|++-| .+|...-.=+.+.+-|+++......+
T Consensus 223 Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I 290 (344)
T KOG4532|consen 223 QDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVI 290 (344)
T ss_pred cCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEE
Confidence 999999999987553322 2 12688999999999866 34555555688999999997665544
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.85 E-value=3.7e-07 Score=97.19 Aligned_cols=196 Identities=15% Similarity=0.055 Sum_probs=119.7
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEE-EeCCCc--EEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWL-GLTSGN--ILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~t-gs~Dg~--I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..|.++++.+++...... ..+.....+|+|||+.|+. .+.+|. |.++|+.++ ....+..+.....
T Consensus 242 ~~L~~~dl~tg~~~~lt~--~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg----------~~~~lt~~~~~~~ 309 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTS--FPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDIATK----------ALTRITRHRAIDT 309 (448)
T ss_pred cEEEEEECCCCCeEEecC--CCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEECCCC----------CeEECccCCCCcc
Confidence 368888988776443322 2233457899999998875 566776 555555443 1234455555667
Q ss_pred EEEEccCCCEEEEEcC-CC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc
Q psy10778 380 DLYLCAGFSVAVSSSE-DG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~-Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~ 456 (556)
..+|+|+++.|+..+. +| .|.++|+.+++..+.... .......+|+|+|+.|+..+... ....|.++|+.+.
T Consensus 310 ~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~---g~~~~~~~~SpDG~~l~~~~~~~--g~~~I~~~dl~~g 384 (448)
T PRK04792 310 EPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFE---GEQNLGGSITPDGRSMIMVNRTN--GKFNIARQDLETG 384 (448)
T ss_pred ceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecC---CCCCcCeeECCCCCEEEEEEecC--CceEEEEEECCCC
Confidence 8899999997765543 44 466668877765433222 23345578999999998876311 1224566777643
Q ss_pred EEEEeecCCCeEEEEEeeCCCCCcceEEEEEe-CCC--eEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGH-SDG--TIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 457 ~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
....+..........|+ |+| +.|+..+ .+| .+++++. +++....+. .+.+.+...+|+|
T Consensus 385 ~~~~lt~~~~d~~ps~s--pdG---~~I~~~~~~~g~~~l~~~~~-~G~~~~~l~-~~~g~~~~p~Wsp 446 (448)
T PRK04792 385 AMQVLTSTRLDESPSVA--PNG---TMVIYSTTYQGKQVLAAVSI-DGRFKARLP-AGQGEVKSPAWSP 446 (448)
T ss_pred CeEEccCCCCCCCceEC--CCC---CEEEEEEecCCceEEEEEEC-CCCceEECc-CCCCCcCCCccCC
Confidence 33333322222345788 888 5555444 444 3677776 666666675 3456677788886
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.84 E-value=5.2e-09 Score=106.23 Aligned_cols=206 Identities=11% Similarity=0.141 Sum_probs=147.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|...|++++...+.+-+++++.|.+|++|.++........ ..+..+...|+.+|.++.|-.+.+.++++ ||-|.+
T Consensus 733 GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~t--saCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~giHl 808 (1034)
T KOG4190|consen 733 GHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGT--SACQFTYQAHKKPIHDIGFLADLRSIASC--DGGIHL 808 (1034)
T ss_pred CcHHHhHHHHhcccccceeeccCCceEEEEEeccccCcccc--ceeeeEhhhccCcccceeeeeccceeeec--cCccee
Confidence 79999999988778889999999999999999864221111 13556788999999999999888877764 789999
Q ss_pred EeCCCCeEEEEeCC-CCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec------CCCeEEEE
Q psy10778 402 WDINTIGYIREIPC-VDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS------ELRITSVT 471 (556)
Q Consensus 402 wdl~~~~~v~~l~~-~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~------~~~i~~i~ 471 (556)
||.-.++.+..+.. +. .+.+..+..-++ ...+++++. ...+|+++|.+ ++....++. ...+.+++
T Consensus 809 WDPFigr~Laq~~dapk-~~a~~~ikcl~nv~~~iliAgcs----aeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 809 WDPFIGRLLAQMEDAPK-EGAGGNIKCLENVDRHILIAGCS----AESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred ecccccchhHhhhcCcc-cCCCceeEecccCcchheeeecc----chhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 99888777654322 11 244444444443 344455543 67899999998 665555532 35678899
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEE-EEcCC
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII-WESSS 543 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v-wdl~~ 543 (556)
.. +.| +.+++|-++|.|.+.|.++|+.+..+. ..+.....++ .|..+.|+....|.++.| |..-+
T Consensus 884 Va--~~G---N~lAa~LSnGci~~LDaR~G~vINswr-pmecdllqla-apsdq~L~~saldHslaVnWhald 949 (1034)
T KOG4190|consen 884 VA--DKG---NKLAAALSNGCIAILDARNGKVINSWR-PMECDLLQLA-APSDQALAQSALDHSLAVNWHALD 949 (1034)
T ss_pred ec--cCc---chhhHHhcCCcEEEEecCCCceeccCC-cccchhhhhc-CchhHHHHhhcccceeEeeehhcC
Confidence 88 888 999999999999999999999888776 3333333333 344556666666777777 76444
|
|
| >KOG1354|consensus | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.1e-07 Score=88.93 Aligned_cols=235 Identities=12% Similarity=0.169 Sum_probs=157.4
Q ss_pred eEEeccCCCeEEEEeCCCCCC-----cceEcCCC------------CCceEEEEEcCCCC--EEEEEeCCCcEEEEEeee
Q psy10778 295 MICWNECDNLIRLKMSKELPA-----TPVIRPPL------------GATIATATTAPDCH--TLWLGLTSGNILVYEYEL 355 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-----~~~~~~~h------------~~~V~~i~~s~dg~--~l~tgs~Dg~I~vwd~~~ 355 (556)
+|++|..+|.|.++..+.... ...++ .| ...|..+.|.++++ .+...+.|.+|++|.+..
T Consensus 39 ~LatGdkgGRVv~f~r~~~~~~ey~~~t~fq-shepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNdktiKlWKi~e 117 (433)
T KOG1354|consen 39 RLATGDKGGRVVLFEREKLYKGEYNFQTEFQ-SHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRE 117 (433)
T ss_pred eEeecCCCCeEEEeecccccccceeeeeeee-ccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCCcceeeeeeec
Confidence 899999999999886543211 11111 22 34788999998754 566778899999999875
Q ss_pred ccCccc--------------------------ccccCCCeEe-eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10778 356 NASTNK--------------------------IEFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG 408 (556)
Q Consensus 356 ~~~~~~--------------------------~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~ 408 (556)
...+.. .....+.+.+ .+|+--|.+|+++.|+..++|+ .|=.|.+|++.--.
T Consensus 118 r~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d 196 (433)
T KOG1354|consen 118 RGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-DDLRINLWNLEIID 196 (433)
T ss_pred cccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-cceeeeeccccccC
Confidence 432210 0000122222 3688889999999999988886 47789999886422
Q ss_pred ---EEEEeCCCCC----CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE-----ee-------------c
Q psy10778 409 ---YIREIPCVDP----NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS-----LA-------------S 463 (556)
Q Consensus 409 ---~v~~l~~~h~----~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~-----~~-------------~ 463 (556)
-+..++. +. ..-|++..|+|....++.-++ ..|+|++.|++...+.. +. -
T Consensus 197 ~sFnIVDIKP-~nmEeLteVITsaEFhp~~cn~f~YSS----SKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffsei 271 (433)
T KOG1354|consen 197 QSFNIVDIKP-ANMEELTEVITSAEFHPHHCNVFVYSS----SKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEI 271 (433)
T ss_pred CceeEEEccc-cCHHHHHHHHhhhccCHhHccEEEEec----CCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHH
Confidence 2333443 30 135788889997654444432 78999999997322111 10 0
Q ss_pred CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC-CCCeEEEEecCCC------------CCCe---EEEEEecCCCEE
Q psy10778 464 ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG-YKLAHLLTLNTNV------------ALPV---IAVTYSCDSQHL 527 (556)
Q Consensus 464 ~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~-~~~~~~~~~~~~h------------~~~V---~~l~~s~dg~~l 527 (556)
-+.|..+.|+ ++| +++++-+. -+|++||+ ...+++.++. -| ...| ..++|+.++.++
T Consensus 272 IsSISDvKFs--~sG---ryilsRDy-ltvk~wD~nme~~pv~t~~-vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v 344 (433)
T KOG1354|consen 272 ISSISDVKFS--HSG---RYILSRDY-LTVKLWDLNMEAKPVETYP-VHEYLRSKLCSLYENDAIFDKFECSWSGNDSYV 344 (433)
T ss_pred hhhhhceEEc--cCC---cEEEEecc-ceeEEEeccccCCcceEEe-ehHhHHHHHHHHhhccchhheeEEEEcCCcceE
Confidence 2467889999 899 89888764 58999999 4566666665 23 1222 457899999999
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
+||+-....+++++..
T Consensus 345 ~TGsy~n~frvf~~~~ 360 (433)
T KOG1354|consen 345 MTGSYNNVFRVFNLAR 360 (433)
T ss_pred ecccccceEEEecCCC
Confidence 9999999999999655
|
|
| >KOG2041|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.2e-07 Score=97.30 Aligned_cols=210 Identities=14% Similarity=0.117 Sum_probs=140.3
Q ss_pred eEEeccCCCeEEEEeCCCCC---------------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc
Q psy10778 295 MICWNECDNLIRLKMSKELP---------------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAST 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~---------------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~ 359 (556)
|+++|+.||.+++..+.+.. ..+.+ .+|...|.-+.|+.+.+.|-|...+|.|.||-+-.++.-
T Consensus 28 yIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtL-eGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykgsW~ 106 (1189)
T KOG2041|consen 28 YIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTL-EGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKGSWC 106 (1189)
T ss_pred eEEeccccceeEEEEccccCCcccccccccccccchhhhh-ccCcceEEEEEeccccccccccCCCceEEEEeeecccHH
Confidence 99999999999998775321 11223 289999999999999999999999999999998866321
Q ss_pred ccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 360 NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI-REIPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 360 ~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
.... -...++.|.+++|..+|+.+...-+||.|++=.+...+.. ..+++ .....+.|++|.+.++.+-
T Consensus 107 EEMi-------NnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg----~~l~hv~ws~D~~~~Lf~~ 175 (1189)
T KOG2041|consen 107 EEMI-------NNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKG----QLLAHVLWSEDLEQALFKK 175 (1189)
T ss_pred HHHh-------hCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcch----heccceeecccHHHHHhhh
Confidence 1111 1234677899999999999999999999998877632211 12322 2244566777666555544
Q ss_pred ecCcCCCCeEEEEEeCCc----------------------EE--------------------------------------
Q psy10778 439 QTTKTGGSILRLHTINAQ----------------------LI-------------------------------------- 458 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~g~----------------------~i-------------------------------------- 458 (556)
..|.+.+||..|. .+
T Consensus 176 -----ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~ 250 (1189)
T KOG2041|consen 176 -----ANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDP 250 (1189)
T ss_pred -----cCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCC
Confidence 4455555543211 00
Q ss_pred --EEeecCCCeEEEEEeeCCCCCcceEEEEEeCC---------CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 459 --TSLASELRITSVTFSNAPEGVSQNVIVTGHSD---------GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 459 --~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d---------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
..+...-.+..+.|+ ++| .+|++++.+ +.|.+|.. -|+.+.++. .....|++++|-..|-.+
T Consensus 251 ~Pvv~dtgm~~vgakWn--h~G---~vLAvcG~~~da~~~~d~n~v~Fysp-~G~i~gtlk-vpg~~It~lsWEg~gLri 323 (1189)
T KOG2041|consen 251 EPVVVDTGMKIVGAKWN--HNG---AVLAVCGNDSDADEPTDSNKVHFYSP-YGHIVGTLK-VPGSCITGLSWEGTGLRI 323 (1189)
T ss_pred CCeEEecccEeecceec--CCC---cEEEEccCcccccCccccceEEEecc-chhheEEEe-cCCceeeeeEEcCCceEE
Confidence 001112345677888 888 788887743 35667664 577777777 456788998887666444
Q ss_pred E
Q psy10778 528 Y 528 (556)
Q Consensus 528 ~ 528 (556)
+
T Consensus 324 A 324 (1189)
T KOG2041|consen 324 A 324 (1189)
T ss_pred E
Confidence 3
|
|
| >KOG1409|consensus | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.5e-07 Score=91.18 Aligned_cols=207 Identities=14% Similarity=0.219 Sum_probs=151.0
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|.+.|++...-|...-+++.+.|.+++||--....+.. ......-..+++++.+.++...|+.|-..|++.-
T Consensus 22 G~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w-------psI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvte 94 (404)
T KOG1409|consen 22 GSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW-------PSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTE 94 (404)
T ss_pred CchhhhhhheeccCCCCeEEccccceeeeEEeccccccC-------chhhhhCCCCceEeeeeccceEEEEEEecceEEE
Confidence 788888888888888899999999999999765431111 1112234567899999999999999999999998
Q ss_pred EeCC----CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC----------------------------------cC
Q psy10778 402 WDIN----TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT----------------------------------KT 443 (556)
Q Consensus 402 wdl~----~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~----------------------------------~~ 443 (556)
+.+. ....++.... | ...+..+-++.....+++.+.+. +.
T Consensus 95 fs~sedfnkm~~~r~~~~-h-~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd 172 (404)
T KOG1409|consen 95 FALSEDFNKMTFLKDYLA-H-QARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGD 172 (404)
T ss_pred EEhhhhhhhcchhhhhhh-h-hcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecc
Confidence 8654 3455666666 7 78888888887777777666433 00
Q ss_pred CCCeEEEEEeC---CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE-EEecCCCCCCeEEE
Q psy10778 444 GGSILRLHTIN---AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL-LTLNTNVALPVIAV 518 (556)
Q Consensus 444 ~d~~I~iwdi~---g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~-~~~~~~h~~~V~~l 518 (556)
..|.|.+-.+. -.++.++ .|...+.+++|. +.. .+|.+|.+|..+.+||+.-.+-. ..+. +|...|..+
T Consensus 173 ~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd--~~~---~~LfSg~~d~~vi~wdigg~~g~~~el~-gh~~kV~~l 246 (404)
T KOG1409|consen 173 HSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWD--PGQ---RLLFSGASDHSVIMWDIGGRKGTAYELQ-GHNDKVQAL 246 (404)
T ss_pred cccceEEEEEeecCCceEEEEcCcccceEEEEEc--CCC---cEEEeccccCceEEEeccCCcceeeeec-cchhhhhhh
Confidence 11222221111 1233333 356889999999 655 79999999999999999654433 3333 788999999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 519 TYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 519 ~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
...+.-+.+.++++||.|.+|+++.
T Consensus 247 ~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 247 SYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred hhhhhheeeeeccCCCeEEEEeccc
Confidence 8888889999999999999999977
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.79 E-value=3.8e-05 Score=75.56 Aligned_cols=198 Identities=13% Similarity=0.155 Sum_probs=139.3
Q ss_pred eEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCcc----------EEEEEEccCCCEEEEEcC
Q psy10778 327 IATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSAC----------VTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~----------V~~l~~s~~~~~l~sgs~ 395 (556)
-+.++++++|++++++. ..|.|.++.+.... .. ........|.+. +.+..+.|+++++++.+-
T Consensus 91 p~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG---~l---~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DL 164 (346)
T COG2706 91 PCYVSVDEDGRFVFVANYHSGSVSVYPLQADG---SL---QPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDL 164 (346)
T ss_pred CeEEEECCCCCEEEEEEccCceEEEEEcccCC---cc---ccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeec
Confidence 37899999999999986 45889999987642 11 122223334444 888999999998888753
Q ss_pred -CCcEEEEeCCCCeEEE----EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC--cEEEEee------
Q psy10778 396 -DGTCLLWDINTIGYIR----EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA--QLITSLA------ 462 (556)
Q Consensus 396 -Dg~I~iwdl~~~~~v~----~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g--~~i~~~~------ 462 (556)
--.|.+|++..|+... .++. ....+.|+|+|++++..+.+. -+++|-+|..+. ..+..+.
T Consensus 165 G~Dri~~y~~~dg~L~~~~~~~v~~---G~GPRHi~FHpn~k~aY~v~E----L~stV~v~~y~~~~g~~~~lQ~i~tlP 237 (346)
T COG2706 165 GTDRIFLYDLDDGKLTPADPAEVKP---GAGPRHIVFHPNGKYAYLVNE----LNSTVDVLEYNPAVGKFEELQTIDTLP 237 (346)
T ss_pred CCceEEEEEcccCccccccccccCC---CCCcceEEEcCCCcEEEEEec----cCCEEEEEEEcCCCceEEEeeeeccCc
Confidence 2358999999876532 2333 678899999999999888875 789999999873 2222221
Q ss_pred ----cCCCeEEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCCC--CeE--EEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 463 ----SELRITSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGYK--LAH--LLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 463 ----~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~~--~~~--~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
...+...|..+ ++| ++|.++.. ...|.++.+.. +++ +.... .+....+...+++.|++|+++..+
T Consensus 238 ~dF~g~~~~aaIhis--~dG---rFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~-teg~~PR~F~i~~~g~~Liaa~q~ 311 (346)
T COG2706 238 EDFTGTNWAAAIHIS--PDG---RFLYASNRGHDSIAVFSVDPDGGKLELVGITP-TEGQFPRDFNINPSGRFLIAANQK 311 (346)
T ss_pred cccCCCCceeEEEEC--CCC---CEEEEecCCCCeEEEEEEcCCCCEEEEEEEec-cCCcCCccceeCCCCCEEEEEccC
Confidence 24566777888 999 88888763 34677776642 332 22222 344557899999999999998876
Q ss_pred -CcEEEEEcCC
Q psy10778 534 -GLVIIWESSS 543 (556)
Q Consensus 534 -g~V~vwdl~~ 543 (556)
..|.++....
T Consensus 312 sd~i~vf~~d~ 322 (346)
T COG2706 312 SDNITVFERDK 322 (346)
T ss_pred CCcEEEEEEcC
Confidence 4688888866
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.78 E-value=2.3e-06 Score=86.22 Aligned_cols=232 Identities=11% Similarity=0.083 Sum_probs=150.3
Q ss_pred eEEeccCCC-eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDN-LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg-~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
-++.|..|| .+-+++.++++..... ..-+.|-++..+++|+.++++.....+.+.|++++ .....-+.
T Consensus 373 ~~vigt~dgD~l~iyd~~~~e~kr~e--~~lg~I~av~vs~dGK~~vvaNdr~el~vididng---------nv~~idkS 441 (668)
T COG4946 373 GDVIGTNDGDKLGIYDKDGGEVKRIE--KDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNG---------NVRLIDKS 441 (668)
T ss_pred ceEEeccCCceEEEEecCCceEEEee--CCccceEEEEEcCCCcEEEEEcCceEEEEEEecCC---------CeeEeccc
Confidence 467788898 8999999987655443 56788999999999999999998888988898876 22223344
Q ss_pred CCccEEEEEEccCCCEEEEEcCCC----cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC--cCCCCe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDG----TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT--KTGGSI 447 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg----~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~--~~~d~~ 447 (556)
..+-|+.+.|+|+++++|-+--+| .|+++|+..++....... .+.=.+-+|.|+++++...+... .+.|..
T Consensus 442 ~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~---ta~DfsPaFD~d~ryLYfLs~RsLdPs~Drv 518 (668)
T COG4946 442 EYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP---TAYDFSPAFDPDGRYLYFLSARSLDPSNDRV 518 (668)
T ss_pred ccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCC---cccccCcccCCCCcEEEEEeccccCCCCCee
Confidence 567799999999999999876665 699999998776665544 45566788999999888776433 113333
Q ss_pred EEEEEeC--Cc-EEEEee-c--------------CC---CeEEEE--Eee--CCCCCcceEEEEEeCCCeEEEEeCCC--
Q psy10778 448 LRLHTIN--AQ-LITSLA-S--------------EL---RITSVT--FSN--APEGVSQNVIVTGHSDGTIQLWSGYK-- 500 (556)
Q Consensus 448 I~iwdi~--g~-~i~~~~-~--------------~~---~i~~i~--~s~--~pdg~~~~~l~tg~~dg~I~iwd~~~-- 500 (556)
+.-+... .+ .+..+. . +. .+..+. ..| ..++ ....+++-.+|.|.++...-
T Consensus 519 ~fnf~f~~vskPylv~L~~g~~sP~~q~p~~~~~ea~e~dle~ie~r~eP~pVee~--dY~sI~~lk~~killfs~pi~G 596 (668)
T COG4946 519 IFNFSFQRVSKPYLVVLGRGYYSPFNQPPDEANSEAGEVDLEGIEDRVEPFPVEEG--DYRSIAGLKNGKILLFSYPIHG 596 (668)
T ss_pred EEEEEEeeeccceEEEecCCCCChhhcCchhcCccccceehhhhcccccccccCcc--ceeEeeecCCCeEEEEEeeccc
Confidence 3222221 11 111111 0 00 000000 001 0112 13455666677666665410
Q ss_pred -------Ce------EEEEecC----CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 501 -------LA------HLLTLNT----NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 501 -------~~------~~~~~~~----~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
++ ....+.. .-...++++..|+|++.++. -.||++++++++.
T Consensus 597 efs~yy~gq~~kG~l~~ydletkk~~e~k~nvss~rlS~D~s~ilv-k~d~kl~~f~vek 655 (668)
T COG4946 597 EFSQYYWGQPEKGRLEKYDLETKKVEEYKDNVSSFRLSSDGSKILV-KLDGKLRLFDVEK 655 (668)
T ss_pred hhhhhhcCCCccceEEEEecchhhHHHHhcccceEEEcCCCCEEEE-EeCCeEEEEeccc
Confidence 11 1111111 12467899999999999888 8899999999987
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=3.5e-06 Score=88.64 Aligned_cols=216 Identities=13% Similarity=0.005 Sum_probs=131.3
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCE-EEEEeCC---CcEEEEEeeeccCcccccccCCCeEeeCCCcc
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHT-LWLGLTS---GNILVYEYELNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~-l~tgs~D---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
...|.+-|..... ...+... +.+..-.|+|||+. ++..+.+ ..|.++|+.++ ....+....+.
T Consensus 168 ~~~l~~~d~dg~~-~~~~~~~--~~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg----------~~~~lt~~~g~ 234 (419)
T PRK04043 168 KSNIVLADYTLTY-QKVIVKG--GLNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG----------KKEKIASSQGM 234 (419)
T ss_pred cceEEEECCCCCc-eeEEccC--CCeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC----------cEEEEecCCCc
Confidence 3456666665443 2323322 36778999999985 6654433 45777777654 12334445566
Q ss_pred EEEEEEccCCCEEE-EEcCC--CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 378 VTDLYLCAGFSVAV-SSSED--GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 378 V~~l~~s~~~~~l~-sgs~D--g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.....|+|||+.++ +.+.+ ..|.++|+..++. +.+.. + ........|+|||+.|+..+... ....|.++|++
T Consensus 235 ~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~-~~LT~-~-~~~d~~p~~SPDG~~I~F~Sdr~--g~~~Iy~~dl~ 309 (419)
T PRK04043 235 LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTL-TQITN-Y-PGIDVNGNFVEDDKRIVFVSDRL--GYPNIFMKKLN 309 (419)
T ss_pred EEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcE-EEccc-C-CCccCccEECCCCCEEEEEECCC--CCceEEEEECC
Confidence 67788999998654 44444 4677778887764 44544 3 33345668999999998887422 23468888887
Q ss_pred CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC---------CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 455 AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD---------GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d---------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
+.....+...+. ....|+ |+| +.|+..... ..|.+.|+.++.. +.+... .......|+|||+
T Consensus 310 ~g~~~rlt~~g~-~~~~~S--PDG---~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~-~~LT~~--~~~~~p~~SPDG~ 380 (419)
T PRK04043 310 SGSVEQVVFHGK-NNSSVS--TYK---NYIVYSSRETNNEFGKNTFNLYLISTNSDYI-RRLTAN--GVNQFPRFSSDGG 380 (419)
T ss_pred CCCeEeCccCCC-cCceEC--CCC---CEEEEEEcCCCcccCCCCcEEEEEECCCCCe-EECCCC--CCcCCeEECCCCC
Confidence 443333322221 124899 899 666554432 3688888877754 445422 2333578999999
Q ss_pred EEEEEcCC-C--cEEEEEcCCC
Q psy10778 526 HLYASNTE-G--LVIIWESSSH 544 (556)
Q Consensus 526 ~l~sgs~D-g--~V~vwdl~~~ 544 (556)
.|+..+.+ | .+.+.++...
T Consensus 381 ~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 381 SIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred EEEEEEccCCcEEEEEEecCCC
Confidence 87765543 3 3666666553
|
|
| >KOG4190|consensus | Back alignment and domain information |
|---|
Probab=98.76 E-value=1.8e-08 Score=102.37 Aligned_cols=172 Identities=15% Similarity=0.198 Sum_probs=131.7
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC-------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeec
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
++.+.||...|..++.-.+.+-++++++|.+|++|.++.. .+..++.. | ..+|..+.|-.+.+.++++
T Consensus 728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~a-H-kk~i~~igfL~~lr~i~Sc--- 802 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQA-H-KKPIHDIGFLADLRSIASC--- 802 (1034)
T ss_pred eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhh-c-cCcccceeeeeccceeeec---
Confidence 3567899999998887777778999999999999998742 25567778 8 8999999999998888875
Q ss_pred CcCCCCeEEEEEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEE-eCCCeEEEEeCCCCeEEEEecC----CC
Q psy10778 441 TKTGGSILRLHTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTG-HSDGTIQLWSGYKLAHLLTLNT----NV 511 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg-~~dg~I~iwd~~~~~~~~~~~~----~h 511 (556)
|+-|++||.- |+++.... .++.+..+..-+.-+. .+++.| +...+|+++|.+.++....+.. +.
T Consensus 803 ----D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~---~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~P 875 (1034)
T KOG4190|consen 803 ----DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDR---HILIAGCSAESTVKLFDARSCEWTCELKVCNAPGP 875 (1034)
T ss_pred ----cCcceeecccccchhHhhhcCcccCCCceeEecccCcc---hheeeeccchhhheeeecccccceeeEEeccCCCC
Confidence 6899999984 77666442 2233333333321233 455555 6789999999998887666543 33
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 512 ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 512 ~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
...+++++..+.|..++++-++|+|.+.|.++++.+....
T Consensus 876 na~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswr 915 (1034)
T KOG4190|consen 876 NALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWR 915 (1034)
T ss_pred chheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCC
Confidence 4678999999999999999999999999999988665443
|
|
| >KOG1334|consensus | Back alignment and domain information |
|---|
Probab=98.75 E-value=7.1e-08 Score=97.12 Aligned_cols=201 Identities=15% Similarity=0.217 Sum_probs=150.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC--CCEEEEEcCCCcE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG--FSVAVSSSEDGTC 399 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I 399 (556)
.|.+.|..+.|...|..|++|+.|..|.+||+.... ....-..||...|....|-|. .+.+++++.||.+
T Consensus 140 ~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~--------~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqv 211 (559)
T KOG1334|consen 140 KHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGS--------PKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQV 211 (559)
T ss_pred CCCCccceeeecccCceeeccCccceEEeehhhccC--------cccccccccccchhhhhccCCCCCcCceeccccCce
Confidence 799999999999999999999999999999998762 222445689999988888874 3579999999999
Q ss_pred EEEeCCCCeEE---EEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEEEeC-Cc---EEEEee-cCC---Ce
Q psy10778 400 LLWDINTIGYI---REIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLHTIN-AQ---LITSLA-SEL---RI 467 (556)
Q Consensus 400 ~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iwdi~-g~---~i~~~~-~~~---~i 467 (556)
++=.+....++ ..+.. | .++|..++.-|+.. .+.+++ .|+.+.-+|++ +. .+.... ... ..
T Consensus 212 r~s~i~~t~~~e~t~rl~~-h-~g~vhklav~p~sp~~f~S~g-----eD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L 284 (559)
T KOG1334|consen 212 RVSEILETGYVENTKRLAP-H-EGPVHKLAVEPDSPKPFLSCG-----EDAVVFHIDLRQDVPAEKFVCREADEKERVGL 284 (559)
T ss_pred eeeeeccccceecceeccc-c-cCccceeeecCCCCCcccccc-----cccceeeeeeccCCccceeeeeccCCccceee
Confidence 99876543332 34445 7 89999999999865 455666 89999999997 32 222222 222 56
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE------EEEecC-----CCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH------LLTLNT-----NVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~------~~~~~~-----~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
.+++.. |... +.+++|+.|-.+++||.+.... +..+.. .....|++++++.++.-|+++-.|-.|
T Consensus 285 ~~Ia~~--P~nt--~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~I 360 (559)
T KOG1334|consen 285 YTIAVD--PRNT--NEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDI 360 (559)
T ss_pred eeEecC--CCCc--cccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccce
Confidence 778877 4432 6899999999999999865332 233322 224669999999888888888889899
Q ss_pred EEEEc
Q psy10778 537 IIWES 541 (556)
Q Consensus 537 ~vwdl 541 (556)
+++.-
T Consensus 361 YLF~~ 365 (559)
T KOG1334|consen 361 YLFNK 365 (559)
T ss_pred EEecc
Confidence 99943
|
|
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.74 E-value=1.9e-07 Score=92.30 Aligned_cols=161 Identities=8% Similarity=0.051 Sum_probs=115.6
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEeCCCCe----EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-
Q psy10778 380 DLYLCAGFSVAVSSSEDGTCLLWDINTIG----YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN- 454 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~----~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~- 454 (556)
.+..++++++++.+..+..+.+++..... .+..... ...-+++.+..+......+-..+ ....+.+|...
T Consensus 67 ~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v---~~~~~ai~~~~~~~sv~v~dkag--D~~~~di~s~~~ 141 (390)
T KOG3914|consen 67 LVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCV---PKRPTAISFIREDTSVLVADKAG--DVYSFDILSADS 141 (390)
T ss_pred ccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeec---ccCcceeeeeeccceEEEEeecC--Cceeeeeecccc
Confidence 34456677777777777776666655432 2222222 23344555555545554444110 33445555554
Q ss_pred CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 455 AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
+...-.+.|-+.++.++++ ||+ ++|+++..|..|++-.....-.+..+..||..-|..++.-++. .|++|+.|+
T Consensus 142 ~~~~~~lGhvSml~dVavS--~D~---~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~~-~LlS~sGD~ 215 (390)
T KOG3914|consen 142 GRCEPILGHVSMLLDVAVS--PDD---QFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDNY-LLLSGSGDK 215 (390)
T ss_pred cCcchhhhhhhhhheeeec--CCC---CEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccCc-eeeecCCCC
Confidence 6666677788999999999 888 8999999999999998887778888887999999999998754 589999999
Q ss_pred cEEEEEcCCCCCcCeee
Q psy10778 535 LVIIWESSSHNRTPKFL 551 (556)
Q Consensus 535 ~V~vwdl~~~~~~~~~~ 551 (556)
+|++||+.+++.+.++.
T Consensus 216 tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 216 TLRLWDITSGKLLDTCD 232 (390)
T ss_pred cEEEEecccCCcccccc
Confidence 99999999998876654
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.6e-05 Score=82.94 Aligned_cols=226 Identities=8% Similarity=0.013 Sum_probs=139.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..++.||.+..+|..+++........ +.+.+.... .+..++.++.+|.+..||..++. .+......
T Consensus 107 ~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~---------~~W~~~~~ 174 (377)
T TIGR03300 107 LVFVGTEKGEVIALDAEDGKELWRAKLS--SEVLSPPLV-ANGLVVVRTNDGRLTALDAATGE---------RLWTYSRV 174 (377)
T ss_pred EEEEEcCCCEEEEEECCCCcEeeeeccC--ceeecCCEE-ECCEEEEECCCCeEEEEEcCCCc---------eeeEEccC
Confidence 6667788999999999888766554322 222221111 24577778889999999988762 11222111
Q ss_pred CccE-----EEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC--CCe-------eEEEEeCCCCeEEEEeec
Q psy10778 375 SACV-----TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN--TPV-------SHVTMSETNGEIASVLQT 440 (556)
Q Consensus 375 ~~~V-----~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~--~~V-------~~l~~sp~~~~i~s~s~~ 440 (556)
...+ .+.... +..++.++.+|.+..+|+.+|+.+.+.....+. ..+ ....+ .++.+++++
T Consensus 175 ~~~~~~~~~~sp~~~--~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~--~~~~vy~~~-- 248 (377)
T TIGR03300 175 TPALTLRGSASPVIA--DGGVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVV--DGGQVYAVS-- 248 (377)
T ss_pred CCceeecCCCCCEEE--CCEEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEE--ECCEEEEEE--
Confidence 1110 011111 246788888999999999999876543320000 000 11112 245677776
Q ss_pred CcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 441 TKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
.++.++.+|.+ |+.+....... ....... + ..+++++.+|.+..+|..+++.+............+..
T Consensus 249 ---~~g~l~a~d~~tG~~~W~~~~~~-~~~p~~~----~---~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~ 317 (377)
T TIGR03300 249 ---YQGRVAALDLRSGRVLWKRDASS-YQGPAVD----D---NRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPA 317 (377)
T ss_pred ---cCCEEEEEECCCCcEEEeeccCC-ccCceEe----C---CEEEEECCCCeEEEEECCCCcEEEccccccCCccccCE
Confidence 78999999996 87776654322 1222222 3 46778889999999999999888766311111222222
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 520 YSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
. .+..|++++.+|.|+++|..+++.+.+++
T Consensus 318 i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~~ 347 (377)
T TIGR03300 318 V--VGGYLVVGDFEGYLHWLSREDGSFVARLK 347 (377)
T ss_pred E--ECCEEEEEeCCCEEEEEECCCCCEEEEEE
Confidence 2 36688999999999999999887765554
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG3914|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=3.2e-07 Score=90.73 Aligned_cols=161 Identities=14% Similarity=0.122 Sum_probs=111.0
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEE---EEcCCCcEEEEeC
Q psy10778 328 ATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV---SSSEDGTCLLWDI 404 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~---sgs~Dg~I~iwdl 404 (556)
..+..+++++++|++..+....++++..... ..++....... ..-+++.+..+..... .+++...+.+|..
T Consensus 66 ~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-----~~kl~~~~~v~-~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 66 ALVLTSDSGRLVAVATSSKQRAVFDYRENPK-----GAKLLDVSCVP-KRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cccccCCCceEEEEEeCCCceEEEEEecCCC-----cceeeeEeecc-cCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3455677888999988888888888876532 11223333222 2223444444444333 3445566667766
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-cEEEEe--ecCCCeEEEEEeeCCCCCcc
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-QLITSL--ASELRITSVTFSNAPEGVSQ 481 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~~i~~~--~~~~~i~~i~~s~~pdg~~~ 481 (556)
..+.. +.+-+ | -+-+..++++||+++|+++. +|..|++-...+ -.+..+ .|...|..++.. ++
T Consensus 140 ~~~~~-~~~lG-h-vSml~dVavS~D~~~IitaD-----RDEkIRvs~ypa~f~IesfclGH~eFVS~isl~--~~---- 205 (390)
T KOG3914|consen 140 DSGRC-EPILG-H-VSMLLDVAVSPDDQFIITAD-----RDEKIRVSRYPATFVIESFCLGHKEFVSTISLT--DN---- 205 (390)
T ss_pred cccCc-chhhh-h-hhhhheeeecCCCCEEEEec-----CCceEEEEecCcccchhhhccccHhheeeeeec--cC----
Confidence 65443 34445 7 88999999999999999998 899999876653 333333 578899999998 55
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 482 NVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 482 ~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
..|++|+.|++|++||+.+|+.+.++.
T Consensus 206 ~~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 206 YLLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ceeeecCCCCcEEEEecccCCcccccc
Confidence 579999999999999999999887664
|
|
| >KOG2315|consensus | Back alignment and domain information |
|---|
Probab=98.63 E-value=2.7e-06 Score=87.44 Aligned_cols=158 Identities=6% Similarity=0.074 Sum_probs=118.1
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE--eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG--LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg--s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..++++.+.++.. ..+...-.++|.++.|+++|+.++++ -.=-.+.|+|++.. -.+.-..++=+
T Consensus 250 Eq~Lyll~t~g~s--~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~------------~v~df~egpRN 315 (566)
T KOG2315|consen 250 EQTLYLLATQGES--VSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK------------PVFDFPEGPRN 315 (566)
T ss_pred cceEEEEEecCce--EEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC------------EeEeCCCCCcc
Confidence 3567777776322 23333467899999999999877664 45568899998753 33444566778
Q ss_pred EEEEccCCCEEEEEcC---CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeec-CcCCCCeEEEEEeCC
Q psy10778 380 DLYLCAGFSVAVSSSE---DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQT-TKTGGSILRLHTINA 455 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~---Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~-~~~~d~~I~iwdi~g 455 (556)
++.|+|.|++|+.++- -|.+-|||+.+.+.+..+.. ..-+-+.|+|||.+|+++... .-..|+.++||+..|
T Consensus 316 ~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a----~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG 391 (566)
T KOG2315|consen 316 TAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKA----ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG 391 (566)
T ss_pred ceEECCCCCEEEEeecCCCCCceEEEeccchhhcccccc----CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC
Confidence 8999999998887764 58999999999888888876 345678999999999998743 112478899999999
Q ss_pred cEEEEeecCCCeEEEEEeeCCC
Q psy10778 456 QLITSLASELRITSVTFSNAPE 477 (556)
Q Consensus 456 ~~i~~~~~~~~i~~i~~s~~pd 477 (556)
.++......+....++|-|..+
T Consensus 392 ~~l~~~~f~sEL~qv~W~P~~~ 413 (566)
T KOG2315|consen 392 SLLHEKMFKSELLQVEWRPFND 413 (566)
T ss_pred ceeehhhhhHhHhheeeeecCC
Confidence 9887765555677888884333
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.62 E-value=2.4e-05 Score=74.83 Aligned_cols=199 Identities=14% Similarity=0.101 Sum_probs=122.4
Q ss_pred EEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee---CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 330 ATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL---GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 330 i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
++.+.+|+.||.-- |..|.|-..+.. .. ..+.... ...-.=.-++||||+.+||.+...|+|+++|+..
T Consensus 3 ~~~~~~Gk~lAi~q-d~~iEiRsa~Dd--f~-----si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g 74 (282)
T PF15492_consen 3 LALSSDGKLLAILQ-DQCIEIRSAKDD--FS-----SIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMG 74 (282)
T ss_pred eeecCCCcEEEEEe-ccEEEEEeccCC--ch-----heeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEeccc
Confidence 45667888877755 556665544332 11 1112222 2223356799999999999999999999999984
Q ss_pred CeEEEEeCCCC-----CCCCeeEEEEeCCC------CeEEEEeecCcCCCCeEEEEEeC------CcEEEEee----cCC
Q psy10778 407 IGYIREIPCVD-----PNTPVSHVTMSETN------GEIASVLQTTKTGGSILRLHTIN------AQLITSLA----SEL 465 (556)
Q Consensus 407 ~~~v~~l~~~h-----~~~~V~~l~~sp~~------~~i~s~s~~~~~~d~~I~iwdi~------g~~i~~~~----~~~ 465 (556)
..+..+...+ ....|..+.|.+.. ..+++.. ..|.++-|-+. .+...++. ...
T Consensus 75 -~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-----Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~ 148 (282)
T PF15492_consen 75 -SELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-----YRGQLRSYLVSVGTNQGYQENHSFSFSSHYPH 148 (282)
T ss_pred -ceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEe-----ccceeeeEEEEcccCCcceeeEEEEecccCCC
Confidence 5555554311 02456666665432 1333343 56677666542 22333332 256
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeC-CC----------eEEEEeCCCCe---------------------EEEEe-----c
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHS-DG----------TIQLWSGYKLA---------------------HLLTL-----N 508 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~-dg----------~I~iwd~~~~~---------------------~~~~~-----~ 508 (556)
.|.++.++ |.- ++|++|+. .. -+.-|.+-++. ..+.+ .
T Consensus 149 Gi~~~vy~--p~h---~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs 223 (282)
T PF15492_consen 149 GINSAVYH--PKH---RLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRIPSFKFFS 223 (282)
T ss_pred ceeEEEEc--CCC---CEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeeccceeeee
Confidence 89999999 665 67776652 11 35666552211 00101 0
Q ss_pred --CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 509 --TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 509 --~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
......|..|..||||+.|++...+|.|.+|++++-...
T Consensus 224 ~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~ 264 (282)
T PF15492_consen 224 RQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQ 264 (282)
T ss_pred ccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhh
Confidence 023577999999999999999999999999999985443
|
|
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.2e-07 Score=88.62 Aligned_cols=210 Identities=16% Similarity=0.221 Sum_probs=123.2
Q ss_pred eEEEEEcCCCCEEEEEeCCCcEEEEEeeeccC---cccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 327 IATATTAPDCHTLWLGLTSGNILVYEYELNAS---TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~---~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
|+.+.++.+ -.|+++..++.+.....-.... ........+...+..|..+-.+-+.+-.+..++.+..||.+.+.+
T Consensus 39 ~~~~~~v~~-~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s 117 (319)
T KOG4714|consen 39 LSKVSLSAE-YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFS 117 (319)
T ss_pred EEEeechhh-heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEe
Confidence 555555543 4566666665554443221100 000001133455555555544444455567899999999999998
Q ss_pred CCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCc
Q psy10778 404 INTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 404 l~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~ 480 (556)
.+... ..+.+...| ..--+.++...+..+.++.-..-..-+..+.|+++ +.++...+....|.+++-+|.+.
T Consensus 118 ~~~~~~~~~~i~~~~--~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~~~~~v~~l~~hp~qq--- 192 (319)
T KOG4714|consen 118 TDKDLALMSRIPSIH--SGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKKALDAVTALCSHPAQQ--- 192 (319)
T ss_pred chHHHhhhhhccccc--ccccccceeecccEEecCCcceEeeccceeeecccccccccccccccccchhhhCCcccc---
Confidence 77521 111222101 11122223333444443320000022345556665 33333333445699999885333
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec-CCCEEEEEcCCCcEEEEEcCC
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC-DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+++++|+.||.+.+||.+.......+-..|+.+|..+-|+| ++..|.++++||.+.-||-.+
T Consensus 193 -~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 193 -HLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred -cEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 68999999999999999988655444348999999999999 568999999999999999875
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.6e-05 Score=78.18 Aligned_cols=183 Identities=13% Similarity=0.119 Sum_probs=131.0
Q ss_pred CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC---CCcEEEEeCCC--CeE--EEEeCCCC
Q psy10778 345 SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE---DGTCLLWDINT--IGY--IREIPCVD 417 (556)
Q Consensus 345 Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iwdl~~--~~~--v~~l~~~h 417 (556)
+.-|++|++++...... ...+..+.+..+-|+|+++.+.|.++-+ +|.|.-+.+.. |+. +..... .
T Consensus 15 s~gI~v~~ld~~~g~l~------~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELS------LLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-P 87 (346)
T ss_pred CCceEEEEEeCcccccc------hhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-C
Confidence 57799999986522111 1234456778899999999998888765 46777776653 443 222222 2
Q ss_pred CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--Cc---EEEEeecCCC----------eEEEEEeeCCCCCcce
Q psy10778 418 PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQ---LITSLASELR----------ITSVTFSNAPEGVSQN 482 (556)
Q Consensus 418 ~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~---~i~~~~~~~~----------i~~i~~s~~pdg~~~~ 482 (556)
..+...+++++++++++++.. ..+.|.++-++ |. .+....|.+. +.+..+. |++ +
T Consensus 88 -g~~p~yvsvd~~g~~vf~AnY----~~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~t--P~~---~ 157 (346)
T COG2706 88 -GSPPCYVSVDEDGRFVFVANY----HSGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFT--PDG---R 157 (346)
T ss_pred -CCCCeEEEECCCCCEEEEEEc----cCceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeC--CCC---C
Confidence 345588999999999999986 67899999885 43 3344455444 8888898 898 7
Q ss_pred EEEEEe-CCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCCC
Q psy10778 483 VIVTGH-SDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASNT-EGLVIIWESSSH 544 (556)
Q Consensus 483 ~l~tg~-~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~~ 544 (556)
+|++.+ .-.+|.+|++..+++...-.. ......+.|+|+|++++.+..++ +++|.+|.....
T Consensus 158 ~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~ 223 (346)
T COG2706 158 YLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPA 223 (346)
T ss_pred EEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCC
Confidence 777765 445799999987775433221 33567899999999999887775 899999999883
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.61 E-value=1.1e-05 Score=92.59 Aligned_cols=232 Identities=13% Similarity=0.095 Sum_probs=152.6
Q ss_pred eEEeccCCCeEEEE----eCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeecc---------Cc--
Q psy10778 295 MICWNECDNLIRLK----MSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA---------ST-- 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw----~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~---------~~-- 359 (556)
-++.+..+|.|.+. +..+... ..+. .-..+|.|++||||+..|+.++.+|++.+-...-.. ..
T Consensus 89 ~l~~~~~~Gdi~~~~~~~~~~~~~~-E~VG-~vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~ 166 (928)
T PF04762_consen 89 SLCIALASGDIILVREDPDPDEDEI-EIVG-SVDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGE 166 (928)
T ss_pred cEEEEECCceEEEEEccCCCCCcee-EEEE-EEcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCC
Confidence 46677888999888 4443322 1111 345789999999999999999999988775432100 00
Q ss_pred -------------------ccc-----cccCC----CeEeeCCCccEEEEEEccCCCEEEEEcC------CCcEEEEeCC
Q psy10778 360 -------------------NKI-----EFCKP----PTILLGHSACVTDLYLCAGFSVAVSSSE------DGTCLLWDIN 405 (556)
Q Consensus 360 -------------------~~~-----~~~~~----~~~l~~h~~~V~~l~~s~~~~~l~sgs~------Dg~I~iwdl~ 405 (556)
++. ..... ...+. +.+.-..|+|-.||.++|+.+- -..++||+-+
T Consensus 167 ~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re 245 (928)
T PF04762_consen 167 SKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE 245 (928)
T ss_pred CceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCC
Confidence 000 00000 01222 4556678999999999988763 2579999855
Q ss_pred CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-----CCCeEEEEEeeCCCCCc
Q psy10778 406 TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-----ELRITSVTFSNAPEGVS 480 (556)
Q Consensus 406 ~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-----~~~i~~i~~s~~pdg~~ 480 (556)
|....+-+. - .+--.+++|.|.|..||+..... ....|.+|.-||-....+.. ...|..++|+ +++
T Consensus 246 -G~L~stSE~-v-~gLe~~l~WrPsG~lIA~~q~~~--~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~l~Wn--~ds-- 316 (928)
T PF04762_consen 246 -GELQSTSEP-V-DGLEGALSWRPSGNLIASSQRLP--DRHDVVFFERNGLRHGEFTLRFDPEEEKVIELAWN--SDS-- 316 (928)
T ss_pred -ceEEecccc-C-CCccCCccCCCCCCEEEEEEEcC--CCcEEEEEecCCcEeeeEecCCCCCCceeeEEEEC--CCC--
Confidence 665554443 3 44556799999999999886321 45678888888876666642 4689999999 888
Q ss_pred ceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEE
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWE 540 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwd 540 (556)
.+|++-..|. |.+|-..+.. +.+.+.......+..+.|+|.. ..|...+.+|.+..++
T Consensus 317 -~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~ 377 (928)
T PF04762_consen 317 -EILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYD 377 (928)
T ss_pred -CEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEE
Confidence 8999877655 9999886544 2222321233455669999954 5577777767775544
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=98.61 E-value=7.3e-07 Score=95.14 Aligned_cols=182 Identities=17% Similarity=0.185 Sum_probs=138.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
.+.++|++++ ++.|+.|+-+|.|++++.... + .+...|+.. ..+|.+++|||.||+|.|-.
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~~~----------~-~~~~~~s~~------~~~Gey~asCS~DGkv~I~s 99 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQGN----------P-KTNFDHSSS------ILEGEYVASCSDDGKVVIGS 99 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecCCc----------c-ccccccccc------ccCCceEEEecCCCcEEEee
Confidence 5677888875 479999999999999998754 2 344445444 66899999999999999999
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCC-----CCeEEEEeecCcCCCCeEEEEEeC--CcEEEE--eecCCCeEEEEEee
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSET-----NGEIASVLQTTKTGGSILRLHTIN--AQLITS--LASELRITSVTFSN 474 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~-----~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~--~~~~~~i~~i~~s~ 474 (556)
+-+.+...++.- ..++.+++++|+ .+.+++|+ ..| +.++.-+ |..... ....++|.+++|.
T Consensus 100 l~~~~~~~~~df---~rpiksial~Pd~~~~~sk~fv~GG-----~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~- 169 (846)
T KOG2066|consen 100 LFTDDEITQYDF---KRPIKSIALHPDFSRQQSKQFVSGG-----MAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR- 169 (846)
T ss_pred ccCCccceeEec---CCcceeEEeccchhhhhhhheeecC-----cce-EEEehhhhhcCccceeeecCccceEEEEec-
Confidence 998888887776 689999999998 57888888 667 8777765 433332 2457899999998
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-----ALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
| +++|-++.+| |++||+.+++.+..+...+ +.-...+.|.++.++++ +..-+|+|..++.
T Consensus 170 ---g---~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI--GW~d~v~i~~I~~ 234 (846)
T KOG2066|consen 170 ---G---NLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI--GWGDSVKICSIKK 234 (846)
T ss_pred ---C---cEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE--ecCCeEEEEEEec
Confidence 5 7888888766 7999999999888877533 12235678887765444 3444788888873
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.60 E-value=6.2e-07 Score=85.73 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=140.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc------------cEEEEEEccCCC--
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA------------CVTDLYLCAGFS-- 388 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~------------~V~~l~~s~~~~-- 388 (556)
..+.|+++.|...|.+|++|...|.|.+|.-... .+... +....+++|.. .|..|.|..++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s--~~cey--kf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~ 100 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKS--YGCEY--KFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRN 100 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccc--cccch--hhhhhhcccccchhhhhhccHHHHhhheeeecCCCcc
Confidence 4567999999999999999999999999876543 11111 33344566643 478888987654
Q ss_pred EEEEEcCCCcEEEEeCCCCe-------------------------------------EE-----EEeCCCCCCCCeeEEE
Q psy10778 389 VAVSSSEDGTCLLWDINTIG-------------------------------------YI-----REIPCVDPNTPVSHVT 426 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~-------------------------------------~v-----~~l~~~h~~~~V~~l~ 426 (556)
.++..+.|.+|++|.+.... .+ |.....| ...+.++.
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH-~yhiNSiS 179 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAH-PYHINSIS 179 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccc-eeEeeeee
Confidence 46666789999999875320 00 1111114 55678899
Q ss_pred EeCCCCeEEEEeecCcCCCCeEEEEEeC---Cc--EEEEeec-----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 427 MSETNGEIASVLQTTKTGGSILRLHTIN---AQ--LITSLAS-----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 427 ~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g~--~i~~~~~-----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
++.|...++++ .+-.|.+|++. +. .+....+ ..-|++..|+ |... +++.-.++.|.|++-
T Consensus 180 ~NsD~et~lSa------DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFh--p~~c--n~fmYSsSkG~Ikl~ 249 (460)
T COG5170 180 FNSDKETLLSA------DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFH--PEMC--NVFMYSSSKGEIKLN 249 (460)
T ss_pred ecCchheeeec------cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccC--HhHc--ceEEEecCCCcEEeh
Confidence 99988888877 57889999985 21 2222222 3468889999 4432 677778889999999
Q ss_pred eCCCCeEE------EE--ecC-------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 497 SGYKLAHL------LT--LNT-------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 497 d~~~~~~~------~~--~~~-------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|+++..+. .. +.. +-...|..+.|+++|+++++-+ =-+|.+||+...+.
T Consensus 250 DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~ 313 (460)
T COG5170 250 DLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKN 313 (460)
T ss_pred hhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccC
Confidence 99743211 11 110 1246688999999999998654 35899999987443
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.58 E-value=7.2e-05 Score=73.06 Aligned_cols=209 Identities=12% Similarity=0.062 Sum_probs=134.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEc-CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTA-PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s-~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~- 372 (556)
++.+.-..+.|..|+..++.... +... . ...+++. +++ .|+.+... .+.++|..++. . +.+....
T Consensus 14 l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~-~~G~~~~~~~g-~l~v~~~~-~~~~~d~~~g~----~---~~~~~~~~ 80 (246)
T PF08450_consen 14 LYWVDIPGGRIYRVDPDTGEVEV-IDLP--G-PNGMAFDRPDG-RLYVADSG-GIAVVDPDTGK----V---TVLADLPD 80 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEE-EESS--S-EEEEEEECTTS-EEEEEETT-CEEEEETTTTE----E---EEEEEEET
T ss_pred EEEEEcCCCEEEEEECCCCeEEE-EecC--C-CceEEEEccCC-EEEEEEcC-ceEEEecCCCc----E---EEEeeccC
Confidence 44455567888888887654332 2211 2 6677777 564 55555554 44555765431 1 1122222
Q ss_pred -C-CCccEEEEEEccCCCEEEEEcCC--------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 373 -G-HSACVTDLYLCAGFSVAVSSSED--------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 373 -~-h~~~V~~l~~s~~~~~l~sgs~D--------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
. .....+.+++.++|++.++.... |.+..++.. ++....... -...+.|+|+|+++.++.+..
T Consensus 81 ~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~---~~~pNGi~~s~dg~~lyv~ds--- 153 (246)
T PF08450_consen 81 GGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADG---LGFPNGIAFSPDGKTLYVADS--- 153 (246)
T ss_dssp TCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEE---ESSEEEEEEETTSSEEEEEET---
T ss_pred CCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecC---cccccceEECCcchheeeccc---
Confidence 1 34568899999999977776543 568888877 554444443 456789999999998876543
Q ss_pred CCCCeEEEEEeC--Cc-E-----EEEeecC-CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q psy10778 443 TGGSILRLHTIN--AQ-L-----ITSLASE-LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~-~-----i~~~~~~-~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~ 513 (556)
..+.|..++++ +. + +...... +..-.+++. .+| ++.++....+.|.+++.. |+.+..+... ..
T Consensus 154 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G---~l~va~~~~~~I~~~~p~-G~~~~~i~~p-~~ 225 (246)
T PF08450_consen 154 -FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDG---NLWVADWGGGRIVVFDPD-GKLLREIELP-VP 225 (246)
T ss_dssp -TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS----EEEEEETTTEEEEEETT-SCEEEEEE-S-SS
T ss_pred -ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCC---CEEEEEcCCCEEEEECCC-ccEEEEEcCC-CC
Confidence 67889999985 33 1 1111122 247889999 899 888888889999999976 9998888743 46
Q ss_pred CeEEEEEe-cCCCEEEEEc
Q psy10778 514 PVIAVTYS-CDSQHLYASN 531 (556)
Q Consensus 514 ~V~~l~~s-~dg~~l~sgs 531 (556)
.+++++|. ++.+.|+..+
T Consensus 226 ~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 226 RPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp SEEEEEEESTTSSEEEEEE
T ss_pred CEEEEEEECCCCCEEEEEe
Confidence 89999995 5666665543
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.58 E-value=1e-05 Score=78.25 Aligned_cols=217 Identities=12% Similarity=0.064 Sum_probs=132.8
Q ss_pred CCeEEEEeCCCCCCcceEcCCC-CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPL-GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h-~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
+|+|..+|..+++.+-...... .....+. ..+++..+++++.++.+..||..++ +.+..... ...+..
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~l~~~d~~tG---------~~~W~~~~-~~~~~~ 70 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVAT-AVPDGGRVYVASGDGNLYALDAKTG---------KVLWRFDL-PGPISG 70 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEET-EEEETTEEEEEETTSEEEEEETTTS---------EEEEEEEC-SSCGGS
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccce-EEEeCCEEEEEcCCCEEEEEECCCC---------CEEEEeec-cccccc
Confidence 6888999998887776665422 2222222 2235678888889999999998766 22222221 111111
Q ss_pred EEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe-CCCC-CC-CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc
Q psy10778 381 LYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI-PCVD-PN-TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ 456 (556)
Q Consensus 381 l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l-~~~h-~~-~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~ 456 (556)
.. ...+..++.++.++.+..+|..+|+.+.+. .. . +. ...........++.++++. .++.|..+|+. |+
T Consensus 71 ~~-~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~~g~l~~~d~~tG~ 143 (238)
T PF13360_consen 71 AP-VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLT-SSPPAGVRSSSSPAVDGDRLYVGT-----SSGKLVALDPKTGK 143 (238)
T ss_dssp GE-EEETTEEEEEETTSEEEEEETTTSCEEEEEEE--SSCTCSTB--SEEEEETTEEEEEE-----TCSEEEEEETTTTE
T ss_pred ee-eecccccccccceeeeEecccCCcceeeeeccc-cccccccccccCceEecCEEEEEe-----ccCcEEEEecCCCc
Confidence 11 223456676778889999999999988874 32 1 01 1122223333377787777 78999999986 88
Q ss_pred EEEEeecCC-C----------eEEEEEeeCCCCCcceEEEEEeCCCe-EEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 457 LITSLASEL-R----------ITSVTFSNAPEGVSQNVIVTGHSDGT-IQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 457 ~i~~~~~~~-~----------i~~i~~s~~pdg~~~~~l~tg~~dg~-I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
.+....... . +.+-... .++ .+..++.+|. +.+ |+.+++.+.... ...+.. ....++
T Consensus 144 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~v~~~~~~g~~~~~-d~~tg~~~w~~~---~~~~~~-~~~~~~ 212 (238)
T PF13360_consen 144 LLWKYPVGEPRGSSPISSFSDINGSPVI--SDG----RVYVSSGDGRVVAV-DLATGEKLWSKP---ISGIYS-LPSVDG 212 (238)
T ss_dssp EEEEEESSTT-SS--EEEETTEEEEEEC--CTT----EEEEECCTSSEEEE-ETTTTEEEEEEC---SS-ECE-CEECCC
T ss_pred EEEEeecCCCCCCcceeeecccccceEE--ECC----EEEEEcCCCeEEEE-ECCCCCEEEEec---CCCccC-CceeeC
Confidence 887775422 1 1122222 233 5555666664 556 999999765333 222333 145667
Q ss_pred CEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 525 QHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
..|+.++.+|.|..||+++++.+
T Consensus 213 ~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 213 GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp TEEEEEETTTEEEEEETTTTEEE
T ss_pred CEEEEEeCCCEEEEEECCCCCEE
Confidence 78888889999999999998754
|
... |
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.56 E-value=3.2e-07 Score=91.64 Aligned_cols=213 Identities=11% Similarity=0.057 Sum_probs=154.2
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC-CCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE-DGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~ 400 (556)
-|.+.|+.+.... .+++.+++.||.++.|.-..- ...+.+..+..|.+.|.+++.+.++.++.|.+. |..++
T Consensus 7 mhrd~i~hv~~tk-a~fiiqASlDGh~KFWkKs~i------sGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 7 MHRDVITHVFPTK-AKFIIQASLDGHKKFWKKSRI------SGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVK 79 (558)
T ss_pred cccceeeeEeeeh-hheEEeeecchhhhhcCCCCc------cceeehhhhHHHHHHHHhhhccccceeEeeccCccccee
Confidence 5888888886654 479999999999999985431 112456677889999999999999999999887 99999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC----eEEEEeecCcCCCCeEEEEEeCCc--EEEEe--ecCCCeEEEEE
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNG----EIASVLQTTKTGGSILRLHTINAQ--LITSL--ASELRITSVTF 472 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~----~i~s~s~~~~~~d~~I~iwdi~g~--~i~~~--~~~~~i~~i~~ 472 (556)
++|+.+-..+..++. ......+.|....+ .|++... .++.+.++|-.+. ..... .|..+|.++.+
T Consensus 80 vfDvEn~DminmiKL---~~lPg~a~wv~skGd~~s~IAVs~~----~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y 152 (558)
T KOG0882|consen 80 VFDVENFDMINMIKL---VDLPGFAEWVTSKGDKISLIAVSLF----KSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRY 152 (558)
T ss_pred EEEeeccchhhhccc---ccCCCceEEecCCCCeeeeEEeecc----cCCCcEEECCcCCcCccceecccccCceEEEEe
Confidence 999987655544443 12222233332222 3444432 6889999998633 22222 47889999999
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEeCCC------CeEEEEecC--------CCCCCeEEEEEecCCCEEEEEcCCCcEEE
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWSGYK------LAHLLTLNT--------NVALPVIAVTYSCDSQHLYASNTEGLVII 538 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd~~~------~~~~~~~~~--------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v 538 (556)
. +.+ ..+++....|.|.-|.... .+....+.. ......+++.|+|+|..+.+-+.|..|++
T Consensus 153 ~--qa~---Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~ 227 (558)
T KOG0882|consen 153 N--QAG---DSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRG 227 (558)
T ss_pred e--ccc---cceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEE
Confidence 9 777 7889999999999998752 111111110 23567889999999999999999999999
Q ss_pred EEcCCCCCcCeeecc
Q psy10778 539 WESSSHNRTPKFLNL 553 (556)
Q Consensus 539 wdl~~~~~~~~~~~~ 553 (556)
+.+++++.+..+...
T Consensus 228 F~~KtGklvqeiDE~ 242 (558)
T KOG0882|consen 228 FVFKTGKLVQEIDEV 242 (558)
T ss_pred EEeccchhhhhhhcc
Confidence 999998877666543
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.53 E-value=1.8e-05 Score=92.28 Aligned_cols=198 Identities=11% Similarity=-0.016 Sum_probs=122.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCC---------------CCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPL---------------GATIATATTAP-DCHTLWLGLTSGNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h---------------~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~ 358 (556)
+.++....+.|+.++..++........+. ...-..++++| ++..+++.+.++.|++|+...+..
T Consensus 638 LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v 717 (1057)
T PLN02919 638 LYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVT 717 (1057)
T ss_pred EEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeE
Confidence 33444455677878776543222111000 11235789999 566667777889999999765411
Q ss_pred cccccccCCCeEeeC------CCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCC------------CCC-
Q psy10778 359 TNKIEFCKPPTILLG------HSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPC------------VDP- 418 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~------h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~------------~h~- 418 (556)
.. ...........+ .-.....|+++|+++ +.++-+.++.|++||+.++.......+ ..+
T Consensus 718 ~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG 796 (1057)
T PLN02919 718 RV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDG 796 (1057)
T ss_pred EE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCC
Confidence 00 000000000001 113456799999988 566667789999999987653211100 000
Q ss_pred ------CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeecC---------------CCeEEEEEeeCCC
Q psy10778 419 ------NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASE---------------LRITSVTFSNAPE 477 (556)
Q Consensus 419 ------~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~---------------~~i~~i~~s~~pd 477 (556)
-.....++++++|..+++-. .++.|++||.++..+..+... .....++++ ++
T Consensus 797 ~g~~~~l~~P~Gvavd~dG~LYVADs-----~N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd--~d 869 (1057)
T PLN02919 797 VGSEVLLQHPLGVLCAKDGQIYVADS-----YNHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALG--EN 869 (1057)
T ss_pred chhhhhccCCceeeEeCCCcEEEEEC-----CCCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEe--CC
Confidence 01246899999998777766 789999999985554443211 246789999 88
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
| +++++.+.++.|++||+.+++.
T Consensus 870 G---~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 G---RLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred C---CEEEEECCCCEEEEEECCCCcc
Confidence 9 8889999999999999988764
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.6e-05 Score=84.66 Aligned_cols=231 Identities=14% Similarity=0.095 Sum_probs=161.2
Q ss_pred ccCCcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCC------------CEEEEEeCCCcEEEEEeeec
Q psy10778 289 IGAGAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDC------------HTLWLGLTSGNILVYEYELN 356 (556)
Q Consensus 289 ~~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg------------~~l~tgs~Dg~I~vwd~~~~ 356 (556)
.|+..+++|.|+. ..|.+.|..+-+.++.+. .|...|+.+.|.|-. -.||++...|.|.+||....
T Consensus 22 Dw~~~GLiAygsh-slV~VVDs~s~q~iqsie-~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~ 99 (1062)
T KOG1912|consen 22 DWSPSGLIAYGSH-SLVSVVDSRSLQLIQSIE-LHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLA 99 (1062)
T ss_pred ccCccceEEEecC-ceEEEEehhhhhhhhccc-cCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhh
Confidence 3444459999864 677888888888888876 688999999998731 25778888899999999876
Q ss_pred cCcccccccCCCeEeeCCCccEEEEEEccC---C-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-C
Q psy10778 357 ASTNKIEFCKPPTILLGHSACVTDLYLCAG---F-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-N 431 (556)
Q Consensus 357 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~ 431 (556)
..+..+..|.+++..++|-+. . ..|+.-....++.+|+..+|+.+..... . .....|+.+.|- .
T Consensus 100 ---------s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~y-s-~~iLs~f~~DPfd~ 168 (1062)
T KOG1912|consen 100 ---------SVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDY-S-HEILSCFRVDPFDS 168 (1062)
T ss_pred ---------hhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeecccc-C-CcceeeeeeCCCCc
Confidence 445667888999999999763 3 4677777788999999999998887766 3 456667888883 4
Q ss_pred CeEEEEeecCcCCCCeEEEEEeC--------CcEEEEee-cCC-------------------------CeEEEEEeeCCC
Q psy10778 432 GEIASVLQTTKTGGSILRLHTIN--------AQLITSLA-SEL-------------------------RITSVTFSNAPE 477 (556)
Q Consensus 432 ~~i~s~s~~~~~~d~~I~iwdi~--------g~~i~~~~-~~~-------------------------~i~~i~~s~~pd 477 (556)
+++...+ ..|.+.+-+.- |+..+... |.+ .....+|+ |.
T Consensus 169 rh~~~l~-----s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~--p~ 241 (1062)
T KOG1912|consen 169 RHFCVLG-----SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFS--PH 241 (1062)
T ss_pred ceEEEEc-----cCceEEEEeccCCCCCCCCceeEEEecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcC--hh
Confidence 5555444 46666665541 23322211 100 01123556 66
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC--CEEEEEcCCCcEEEEEcCC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS--QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg--~~l~sgs~Dg~V~vwdl~~ 543 (556)
. +-++...-...+.++|+.-..++..+.. ..+.+.-+.+-|++ ..|+++-.||++.+|-.+.
T Consensus 242 ~---rn~lfi~~prellv~dle~~~~l~vvpi-er~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 242 W---RNILFITFPRELLVFDLEYECCLAVVPI-ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred h---hceEEEEeccceEEEcchhhceeEEEEe-ccCCcceeEeccCCCcceEEEEecCCeEEEEEeec
Confidence 6 3333344456799999988887777763 34555566777765 5799999999999998766
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.52 E-value=4.5e-07 Score=95.48 Aligned_cols=220 Identities=10% Similarity=0.083 Sum_probs=155.4
Q ss_pred EEEEeCC--CCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 305 IRLKMSK--ELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 305 I~lw~~~--~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
-.+|++. +...+..+..+|...|+.+.|.+. ...+++++.|..+..||+.... .++.....-...-+.+
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~--------~p~ys~~~w~s~asqV 164 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPH--------RPFYSTSSWRSAASQV 164 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCC--------cceeeeecccccCcee
Confidence 3456553 344555566689999999999986 4589999999999999998651 4455555566677889
Q ss_pred EEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEEeC---Cc
Q psy10778 382 YLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHTIN---AQ 456 (556)
Q Consensus 382 ~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwdi~---g~ 456 (556)
+|+.....+.+.+....|.+||++.| ..+..+++ | -..|..++|+.- ...+.+.+ .|++|+.||.. .+
T Consensus 165 kwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~-~-vs~vn~~~fnr~~~s~~~s~~-----~d~tvkfw~y~kSt~e 237 (1081)
T KOG0309|consen 165 KWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKG-H-VSSVNSIDFNRFKYSEIMSSS-----NDGTVKFWDYSKSTTE 237 (1081)
T ss_pred eecccCcchhhhccCCceEEEeccCCCcceEEecc-c-ceeeehHHHhhhhhhhhcccC-----CCCceeeecccccccc
Confidence 99976655666677888999999976 45677888 8 788888888753 34566666 89999999986 33
Q ss_pred EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEe---------CCC-CeEEEEecCCCCCCeEEEEEecCC--
Q psy10778 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS---------GYK-LAHLLTLNTNVALPVIAVTYSCDS-- 524 (556)
Q Consensus 457 ~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd---------~~~-~~~~~~~~~~h~~~V~~l~~s~dg-- 524 (556)
.-..+....+|..-++.|.-+| .++.---.+..+.+++ ..+ .+.++++. ||...|....|-..+
T Consensus 238 ~~~~vtt~~piw~~r~~Pfg~g---~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~-GH~D~V~eFlWR~r~e~ 313 (1081)
T KOG0309|consen 238 SKRTVTTNFPIWRGRYLPFGEG---YCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFV-GHDDVVLEFLWRKRKEC 313 (1081)
T ss_pred cceeccccCcceeccccccCce---eEeccccCCeeeeeccccchhhhhccccCCcceeeec-CcchHHHHHhhhhcccc
Confidence 4444555677777777744444 3333222223444443 322 35788888 898888777765432
Q ss_pred --------CEEEEEcCCCcEEEEEcCC
Q psy10778 525 --------QHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 525 --------~~l~sgs~Dg~V~vwdl~~ 543 (556)
-.|++=+.|..+++|-+.+
T Consensus 314 ~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 314 DGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred cCCCCccceeEEEeecCCceEeeeccH
Confidence 2699999999999999876
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.52 E-value=2.7e-05 Score=81.26 Aligned_cols=223 Identities=13% Similarity=0.084 Sum_probs=136.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..++.+|.|..+|..+++.+-...... ......+ .++..+++++.+|.+..+|..++. .+.....
T Consensus 67 ~v~v~~~~g~v~a~d~~tG~~~W~~~~~~-~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~---------~~W~~~~- 133 (377)
T TIGR03300 67 KVYAADADGTVVALDAETGKRLWRVDLDE-RLSGGVG--ADGGLVFVGTEKGEVIALDAEDGK---------ELWRAKL- 133 (377)
T ss_pred EEEEECCCCeEEEEEccCCcEeeeecCCC-CcccceE--EcCCEEEEEcCCCEEEEEECCCCc---------Eeeeecc-
Confidence 56667788999999988887665544321 1111222 246788889999999999987662 1111111
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCe-----eEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV-----SHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V-----~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
.+.+.+.... .+..++.++.+|.+..||.++|+.+.+... . .... ....+. ++.++.+. .++.+.
T Consensus 134 ~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~-~-~~~~~~~~~~sp~~~--~~~v~~~~-----~~g~v~ 203 (377)
T TIGR03300 134 SSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERLWTYSR-V-TPALTLRGSASPVIA--DGGVLVGF-----AGGKLV 203 (377)
T ss_pred CceeecCCEE-ECCEEEEECCCCeEEEEEcCCCceeeEEcc-C-CCceeecCCCCCEEE--CCEEEEEC-----CCCEEE
Confidence 1122211111 245677788899999999999998877665 2 1111 111222 24666666 678999
Q ss_pred EEEeC-CcEEEEeecCC-----C---eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 450 LHTIN-AQLITSLASEL-----R---ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 450 iwdi~-g~~i~~~~~~~-----~---i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
.+|.+ |+.+....... . ...+.-++.-.+ ..+++++.+|.++.+|..+++.+..... .......
T Consensus 204 ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~---~~vy~~~~~g~l~a~d~~tG~~~W~~~~---~~~~~p~- 276 (377)
T TIGR03300 204 ALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDG---GQVYAVSYQGRVAALDLRSGRVLWKRDA---SSYQGPA- 276 (377)
T ss_pred EEEccCCCEeeeeccccCCCCCchhhhhccCCccEEEC---CEEEEEEcCCEEEEEECCCCcEEEeecc---CCccCce-
Confidence 99985 77665442110 0 001111110122 4677788899999999999998877652 1122222
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
.++..+++++.||.+..+|..+++.+.
T Consensus 277 -~~~~~vyv~~~~G~l~~~d~~tG~~~W 303 (377)
T TIGR03300 277 -VDDNRLYVTDADGVVVALDRRSGSELW 303 (377)
T ss_pred -EeCCEEEEECCCCeEEEEECCCCcEEE
Confidence 246678888999999999998876543
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.8e-05 Score=89.24 Aligned_cols=207 Identities=14% Similarity=0.171 Sum_probs=144.8
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLW 402 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iw 402 (556)
..+.|.++.+.++...++.+..+|.|.+...+..... ..+...-.-...|.+++||||..+++..+.+|++.+-
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~------~~~E~VG~vd~GI~a~~WSPD~Ella~vT~~~~l~~m 147 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE------DEIEIVGSVDSGILAASWSPDEELLALVTGEGNLLLM 147 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC------ceeEEEEEEcCcEEEEEECCCcCEEEEEeCCCEEEEE
Confidence 4578999999999999999999999999844322111 1223334456789999999999999999999988876
Q ss_pred eCCCCeE----------------E--------EEeC------------CC-----------CCCCCeeEEEEeCCCCeEE
Q psy10778 403 DINTIGY----------------I--------REIP------------CV-----------DPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 403 dl~~~~~----------------v--------~~l~------------~~-----------h~~~~V~~l~~sp~~~~i~ 435 (556)
+-. ... + ..+. .+ . ...-..|+|-.||.++|
T Consensus 148 t~~-fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~-dd~~~~ISWRGDG~yFA 225 (928)
T PF04762_consen 148 TRD-FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSW-DDGRVRISWRGDGEYFA 225 (928)
T ss_pred ecc-ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCcccc-CCCceEEEECCCCcEEE
Confidence 421 111 1 0010 00 0 12345788999999999
Q ss_pred EEeecCcCC-CCeEEEEEeCCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEEEecC-
Q psy10778 436 SVLQTTKTG-GSILRLHTINAQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLLTLNT- 509 (556)
Q Consensus 436 s~s~~~~~~-d~~I~iwdi~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~- 509 (556)
+.+-..... .+.+++|+-+|.+..+.+ ..+--.+++|. |.| ++||+... ...|.+|.. +|-.-..|..
T Consensus 226 Vss~~~~~~~~R~iRVy~ReG~L~stSE~v~gLe~~l~Wr--PsG---~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~ 299 (928)
T PF04762_consen 226 VSSVEPETGSRRVIRVYSREGELQSTSEPVDGLEGALSWR--PSG---NLIASSQRLPDRHDVVFFER-NGLRHGEFTLR 299 (928)
T ss_pred EEEEEcCCCceeEEEEECCCceEEeccccCCCccCCccCC--CCC---CEEEEEEEcCCCcEEEEEec-CCcEeeeEecC
Confidence 887533212 478999999988766653 23444678999 999 88888764 456777874 4444444432
Q ss_pred --CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 510 --NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 510 --~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.....|..+.|++|+..|+....|. |.+|...+.
T Consensus 300 ~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NY 335 (928)
T PF04762_consen 300 FDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNY 335 (928)
T ss_pred CCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCC
Confidence 2457899999999999999987665 999998873
|
|
| >KOG0882|consensus | Back alignment and domain information |
|---|
Probab=98.45 E-value=2.9e-06 Score=85.05 Aligned_cols=233 Identities=12% Similarity=0.056 Sum_probs=159.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc--CCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR--PPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~--~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
++..++-||.++.|....-..+..+. ..|...|.+++.+-+|..+.|++. |..++++|+..-.. ..+ ..+
T Consensus 22 fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~Dm----inm---iKL 94 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDM----INM---IKL 94 (558)
T ss_pred eEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccch----hhh---ccc
Confidence 78889999999999765422232222 157888999999999999999877 99999999986411 100 111
Q ss_pred eCCCccEEEEEEccCC----CEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 372 LGHSACVTDLYLCAGF----SVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
..-.+.+.. +...| .+.++.-++|.+.++|-.... ........| ..+|.++.+++.+..+++.. ..|
T Consensus 95 ~~lPg~a~w--v~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH-~sPV~~i~y~qa~Ds~vSiD-----~~g 166 (558)
T KOG0882|consen 95 VDLPGFAEW--VTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLH-FSPVKKIRYNQAGDSAVSID-----ISG 166 (558)
T ss_pred ccCCCceEE--ecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccc-cCceEEEEeeccccceeecc-----ccc
Confidence 112222221 12223 234455578999999976443 333333337 89999999999999998887 789
Q ss_pred eEEEEEeCC-------cEEEEe----------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 447 ILRLHTINA-------QLITSL----------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 447 ~I~iwdi~g-------~~i~~~----------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
.|.-|...+ ++...+ +......++.|+ |+| ..+.+-+.|.+|++++..+++.++.+..
T Consensus 167 mVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efs--p~g---~qistl~~DrkVR~F~~KtGklvqeiDE 241 (558)
T KOG0882|consen 167 MVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFS--PDG---AQISTLNPDRKVRGFVFKTGKLVQEIDE 241 (558)
T ss_pred eeEeecCCCcccCccccccccccccchhhcccccccCccceEEc--ccc---CcccccCcccEEEEEEeccchhhhhhhc
Confidence 999998864 111222 235677899999 899 8899989999999999988876654431
Q ss_pred -------------------------------CC-CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 510 -------------------------------NV-ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 510 -------------------------------~h-~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
.| ...-+.+.|...|++|+-|+-=| |+|.++.+.....
T Consensus 242 ~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~flly~t~~g-ikvin~~tn~v~r 311 (558)
T KOG0882|consen 242 VLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFLLYGTILG-IKVINLDTNTVVR 311 (558)
T ss_pred cchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEEEeeccee-EEEEEeecCeEEE
Confidence 01 12235677888889988887655 7888888765543
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.4e-06 Score=84.46 Aligned_cols=164 Identities=16% Similarity=0.161 Sum_probs=122.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+-+..+.+..+-+-+++++..... ...+.|.++.|...+.+++.|..+|.|.++|++...+.. . .+ ..---|
T Consensus 226 yhfs~G~sqqv~L~nvetg~~qsf---~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~-~---~~-a~rlyh 297 (425)
T KOG2695|consen 226 YHFSVGLSQQVLLTNVETGHQQSF---QSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN-G---WC-AQRLYH 297 (425)
T ss_pred eeecccccceeEEEEeeccccccc---ccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC-C---cc-eEEEEc
Confidence 444556677788888887643322 256778899999888999999999999999998762111 1 22 233459
Q ss_pred CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeE---EEEeCCCCCCC--CeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 375 SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGY---IREIPCVDPNT--PVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 375 ~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~---v~~l~~~h~~~--~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.+.|+++..-. +++.|.+.+-+|+|++||++--+. ++++++ | -. .-.-+.+.+..+.|++++ .|...
T Consensus 298 ~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeG-H-vN~~a~l~~~v~~eeg~I~s~G-----dDcyt 370 (425)
T KOG2695|consen 298 DSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEG-H-VNLSAYLPAHVKEEEGSIFSVG-----DDCYT 370 (425)
T ss_pred CcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeec-c-cccccccccccccccceEEEcc-----CeeEE
Confidence 99999998877 778999999999999999987666 888888 7 32 222344567788899888 89999
Q ss_pred EEEEeC-CcEEEEeecC-----CCeEEEEEe
Q psy10778 449 RLHTIN-AQLITSLASE-----LRITSVTFS 473 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~-----~~i~~i~~s 473 (556)
++|.++ |.++.+++.. ..+.++++.
T Consensus 371 RiWsl~~ghLl~tipf~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 371 RIWSLDSGHLLCTIPFPYSASEVDIPSVAFD 401 (425)
T ss_pred EEEecccCceeeccCCCCccccccccceehh
Confidence 999998 8998888643 245556655
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.40 E-value=6.2e-05 Score=76.13 Aligned_cols=204 Identities=13% Similarity=0.019 Sum_probs=143.0
Q ss_pred cCCCeEEEEeCCCCCCcceEcCC-C-------CCceEE---EE-Ec-CCCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPP-L-------GATIAT---AT-TA-PDCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~-h-------~~~V~~---i~-~s-~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
+.-|.|.++|.++..+...- .+ . ...+.- +. |+ .+|.+++..|. |..-|.+...+
T Consensus 284 q~~GdIylydP~td~lekld-I~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~~~---------- 351 (668)
T COG4946 284 QNAGDIYLYDPETDSLEKLD-IGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPWDG---------- 351 (668)
T ss_pred ecCCcEEEeCCCcCcceeee-cCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCCCC----------
Confidence 35678999998776543321 11 0 001111 11 22 26889988886 66666554433
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCC-cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDG-TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
...-.+|.+.|.-..+..++.-++.|..|| .+-|+|..+++..+.... -+.|.+++.+++|+.++++. ..
T Consensus 352 -~~iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~---lg~I~av~vs~dGK~~vvaN-----dr 422 (668)
T COG4946 352 -YSIQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKD---LGNIEAVKVSPDGKKVVVAN-----DR 422 (668)
T ss_pred -eeEEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCC---ccceEEEEEcCCCcEEEEEc-----Cc
Confidence 123347888899999988888899999999 899999998776665555 68899999999999999887 67
Q ss_pred CeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCC----eEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 446 SILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDG----TIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
..+.++|++ |.....- ...+-|+..+|+ |++ +++|-+--+| .|+++|+..++....-.. .+-=.+-+
T Consensus 423 ~el~vididngnv~~idkS~~~lItdf~~~--~ns---r~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~--ta~DfsPa 495 (668)
T COG4946 423 FELWVIDIDNGNVRLIDKSEYGLITDFDWH--PNS---RWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTP--TAYDFSPA 495 (668)
T ss_pred eEEEEEEecCCCeeEecccccceeEEEEEc--CCc---eeEEEecCcceeeeeEEEEecCCCeEEEecCC--cccccCcc
Confidence 788888887 4433222 345789999999 888 8999776655 689999988776655432 23334558
Q ss_pred EecCCCEEEEEc
Q psy10778 520 YSCDSQHLYASN 531 (556)
Q Consensus 520 ~s~dg~~l~sgs 531 (556)
|.||+++|+--+
T Consensus 496 FD~d~ryLYfLs 507 (668)
T COG4946 496 FDPDGRYLYFLS 507 (668)
T ss_pred cCCCCcEEEEEe
Confidence 999999887654
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.35 E-value=6.4e-05 Score=79.17 Aligned_cols=183 Identities=13% Similarity=0.063 Sum_probs=109.5
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCC--cEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSG--NILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+..|.++|+.+++...+.. ..+...+.+|+|||+.++.. +.++ .|.++++..+ ....+..+....
T Consensus 212 ~~~Iyv~dl~tg~~~~lt~--~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g----------~~~~LT~~~~~d 279 (419)
T PRK04043 212 KPTLYKYNLYTGKKEKIAS--SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK----------TLTQITNYPGID 279 (419)
T ss_pred CCEEEEEECCCCcEEEEec--CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC----------cEEEcccCCCcc
Confidence 4678889998876655543 44556678899999877654 4444 4555565443 123344343334
Q ss_pred EEEEEccCCCEEEEEcC-CC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC---C-CeEEEE
Q psy10778 379 TDLYLCAGFSVAVSSSE-DG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG---G-SILRLH 451 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~-Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~---d-~~I~iw 451 (556)
....|+|||+.|+..+. .| .|.+.|+.+++..+.... ... ...|+|+|+.|+..+...... . ..|.+.
T Consensus 280 ~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~---g~~--~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~ 354 (419)
T PRK04043 280 VNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH---GKN--NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLI 354 (419)
T ss_pred CccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC---CCc--CceECCCCCEEEEEEcCCCcccCCCCcEEEEE
Confidence 45689999987666553 33 577788887765443332 122 248999999998887421100 1 468888
Q ss_pred EeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC-CC--eEEEEeCCCCeEEEEe
Q psy10778 452 TINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS-DG--TIQLWSGYKLAHLLTL 507 (556)
Q Consensus 452 di~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg--~I~iwd~~~~~~~~~~ 507 (556)
|+.+.....+..........|+ |+| +.|+..+. .+ .+.+.++ ++.....+
T Consensus 355 d~~~g~~~~LT~~~~~~~p~~S--PDG---~~I~f~~~~~~~~~L~~~~l-~g~~~~~l 407 (419)
T PRK04043 355 STNSDYIRRLTANGVNQFPRFS--SDG---GSIMFIKYLGNQSALGIIRL-NYNKSFLF 407 (419)
T ss_pred ECCCCCeEECCCCCCcCCeEEC--CCC---CEEEEEEccCCcEEEEEEec-CCCeeEEe
Confidence 8875444444433344468899 899 55554442 23 3556666 33333333
|
|
| >KOG2695|consensus | Back alignment and domain information |
|---|
Probab=98.34 E-value=1.6e-06 Score=84.12 Aligned_cols=147 Identities=10% Similarity=0.086 Sum_probs=114.4
Q ss_pred EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC------CcEEEEeecC
Q psy10778 391 VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN------AQLITSLASE 464 (556)
Q Consensus 391 ~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~------g~~i~~~~~~ 464 (556)
++.+.+-.+-+-|+.+|. .+.+.. .+.|.++.|...+..+..|+ +.|.|..+|++ +.....+-|.
T Consensus 228 fs~G~sqqv~L~nvetg~-~qsf~s---ksDVfAlQf~~s~nLv~~Gc-----RngeI~~iDLR~rnqG~~~~a~rlyh~ 298 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGH-QQSFQS---KSDVFALQFAGSDNLVFNGC-----RNGEIFVIDLRCRNQGNGWCAQRLYHD 298 (425)
T ss_pred ecccccceeEEEEeeccc-cccccc---chhHHHHHhcccCCeeEecc-----cCCcEEEEEeeecccCCCcceEEEEcC
Confidence 455666778888888763 333434 67899999999889999999 99999999995 3567777899
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCCeEE--EEEecCCCEEEEEcCCCcEEEE
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH---LLTLNTNVALPVIA--VTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~--l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
+.|+++..-.. ++ .+|++.+.+|+|++||.+..++ +.++. +|-..-.- +.+.+....+++++.|.-.+||
T Consensus 299 Ssvtslq~Lq~-s~---q~LmaS~M~gkikLyD~R~~K~~~~V~qYe-GHvN~~a~l~~~v~~eeg~I~s~GdDcytRiW 373 (425)
T KOG2695|consen 299 SSVTSLQILQF-SQ---QKLMASDMTGKIKLYDLRATKCKKSVMQYE-GHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIW 373 (425)
T ss_pred cchhhhhhhcc-cc---ceEeeccCcCceeEeeehhhhcccceeeee-cccccccccccccccccceEEEccCeeEEEEE
Confidence 99999987721 44 6899999999999999987776 88887 67443332 3455667889999999999999
Q ss_pred EcCCCCCcCeee
Q psy10778 540 ESSSHNRTPKFL 551 (556)
Q Consensus 540 dl~~~~~~~~~~ 551 (556)
.++.+..+.+++
T Consensus 374 sl~~ghLl~tip 385 (425)
T KOG2695|consen 374 SLDSGHLLCTIP 385 (425)
T ss_pred ecccCceeeccC
Confidence 999877665544
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.00045 Score=67.43 Aligned_cols=198 Identities=11% Similarity=0.090 Sum_probs=124.3
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEc-cCCCEEEEEcCCCcEEEEeCCC
Q psy10778 329 TATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLC-AGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 329 ~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s-~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
+.+|.+ ++.++++-...+.|..|+..++. ...+.... ...+++. +++. ++.+...+ +.++|..+
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~----------~~~~~~~~--~~G~~~~~~~g~-l~v~~~~~-~~~~d~~~ 69 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGE----------VEVIDLPG--PNGMAFDRPDGR-LYVADSGG-IAVVDPDT 69 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTE----------EEEEESSS--EEEEEEECTTSE-EEEEETTC-EEEEETTT
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCe----------EEEEecCC--CceEEEEccCCE-EEEEEcCc-eEEEecCC
Confidence 567887 66666776678889888876541 11122222 6677777 5654 44445544 45559988
Q ss_pred CeEEE--EeC-CCCCCCCeeEEEEeCCCCeEEEEeecCcC-CC--CeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCc
Q psy10778 407 IGYIR--EIP-CVDPNTPVSHVTMSETNGEIASVLQTTKT-GG--SILRLHTINAQLITSLASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 407 ~~~v~--~l~-~~h~~~~V~~l~~sp~~~~i~s~s~~~~~-~d--~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~ 480 (556)
++... ... ..+.....+.++++++|+..++....... .. +.|..++..++.......-...+.|+|+ +++
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~~~~~~~~~~~~~pNGi~~s--~dg-- 145 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPDGKVTVVADGLGFPNGIAFS--PDG-- 145 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETTSEEEEEEEEESSEEEEEEE--TTS--
T ss_pred CcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCCCeEEEEecCcccccceEEC--Ccc--
Confidence 75433 332 10114568899999999876665522110 11 5677777776655554555678999999 888
Q ss_pred ceEE-EEEeCCCeEEEEeCCC-Ce------EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 481 QNVI-VTGHSDGTIQLWSGYK-LA------HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 481 ~~~l-~tg~~dg~I~iwd~~~-~~------~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+.| ++-+..+.|..+++.. +. ....+. ...+..-.+++..+|++.++.-..+.|.+++.+ ++.+
T Consensus 146 -~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~ 217 (246)
T PF08450_consen 146 -KTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFP-GGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLL 217 (246)
T ss_dssp -SEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-S-SSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEE
T ss_pred -hheeecccccceeEEEeccccccceeeeeeEEEcC-CCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEE
Confidence 555 5667788899998742 21 122222 222348899999999988888889999999987 4443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.9e-06 Score=57.85 Aligned_cols=39 Identities=15% Similarity=0.382 Sum_probs=36.4
Q ss_pred CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
++++.++. +|...|++++|+|++.+|++++.|+.|++||
T Consensus 1 g~~~~~~~-~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFR-GHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEE-SSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEc-CCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 46788888 8999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00034 Score=71.15 Aligned_cols=205 Identities=14% Similarity=0.089 Sum_probs=132.6
Q ss_pred EeccCCCeEEEEeCCCCCCcceEcCCCC------CceEEEEEcCCCCEEEEEe-C-CCcEEEEEeeeccCcccccccCCC
Q psy10778 297 CWNECDNLIRLKMSKELPATPVIRPPLG------ATIATATTAPDCHTLWLGL-T-SGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 297 ~~gs~Dg~I~lw~~~~~~~~~~~~~~h~------~~V~~i~~s~dg~~l~tgs-~-Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
+.|-.+..|.+||..+.+....+..+.. ..-..++++|||++|++.. . +..|.+.|+..+..........+.
T Consensus 71 ~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~ 150 (352)
T TIGR02658 71 ARGKRTDYVEVIDPQTHLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCY 150 (352)
T ss_pred ccCCCCCEEEEEECccCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCc
Confidence 3444899999999999988877764322 1233788999999999876 3 688999998765321110000000
Q ss_pred eEe-----------------e----------CCCccEEEE---------EEcc-CCCEEEEEcCCCcEEEEeCCCC----
Q psy10778 369 TIL-----------------L----------GHSACVTDL---------YLCA-GFSVAVSSSEDGTCLLWDINTI---- 407 (556)
Q Consensus 369 ~~l-----------------~----------~h~~~V~~l---------~~s~-~~~~l~sgs~Dg~I~iwdl~~~---- 407 (556)
..+ . .+...+... .+.+ +++++....+ |+|.+-|+...
T Consensus 151 ~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 151 HIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred EEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence 000 0 000011000 2233 6777666665 99999996432
Q ss_pred -eEEEEeCC------CCCCCCeeEEEEeCCCCeEEEEeecC-----cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEee
Q psy10778 408 -GYIREIPC------VDPNTPVSHVTMSETNGEIASVLQTT-----KTGGSILRLHTIN-AQLITSLASELRITSVTFSN 474 (556)
Q Consensus 408 -~~v~~l~~------~h~~~~V~~l~~sp~~~~i~s~s~~~-----~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~ 474 (556)
+.+..+.. -. .+.+.-++++++++.+.+....+ ....+.|.++|.. ++.+..+.....+..++++
T Consensus 230 ~~~~~~~~~~~~~~~wr-P~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS- 307 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWR-PGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVS- 307 (352)
T ss_pred cceeeeccccccccccC-CCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEEC-
Confidence 22332221 01 23344599999999988843111 0133689999997 7888888888899999999
Q ss_pred CCCCCcce-EEEEEe-CCCeEEEEeCCCCeEEEEec
Q psy10778 475 APEGVSQN-VIVTGH-SDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 475 ~pdg~~~~-~l~tg~-~dg~I~iwd~~~~~~~~~~~ 508 (556)
+|+ + +|++.. .++.|.+.|..+++.++++.
T Consensus 308 -~Dg---kp~lyvtn~~s~~VsViD~~t~k~i~~i~ 339 (352)
T TIGR02658 308 -QDA---KPLLYALSTGDKTLYIFDAETGKELSSVN 339 (352)
T ss_pred -CCC---CeEEEEeCCCCCcEEEEECcCCeEEeeec
Confidence 888 6 777666 67889999999999999984
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >KOG4714|consensus | Back alignment and domain information |
|---|
Probab=98.32 E-value=5.1e-06 Score=77.88 Aligned_cols=148 Identities=10% Similarity=0.101 Sum_probs=94.1
Q ss_pred eEEeccCCCeEEEEeCCCCC-CcceEcCCCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELP-ATPVIRPPLGATIATATTAPDCHTLWLGLT-----SGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-----Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
-+++|+.||.+.+.+.+... ....+...|.+.. +.++...++.+.++.. -+..+.|+++... ..+
T Consensus 103 ~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~a-s~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~--------t~~ 173 (319)
T KOG4714|consen 103 RVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSA-SRKICRHGNSILSGGCGNWNAQDNFYANTLDPIK--------TLI 173 (319)
T ss_pred ceEecCCCceEEEEechHHHhhhhhccccccccc-ccceeecccEEecCCcceEeeccceeeecccccc--------ccc
Confidence 58899999999999876521 1111221222221 1222334455544332 1334555554320 000
Q ss_pred eEeeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCC
Q psy10778 369 TILLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGG 445 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d 445 (556)
.. ..-...|++++-+|.. .+++.|+.||.+-+||.+...... .+.. | +.++..+.|+|. +..+++++ +|
T Consensus 174 ~~-~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~a-h-k~~i~eV~FHpk~p~~Lft~s-----ed 245 (319)
T KOG4714|consen 174 PS-KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKA-H-KAEIWEVHFHPKNPEHLFTCS-----ED 245 (319)
T ss_pred cc-ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHH-h-hhhhhheeccCCCchheeEec-----CC
Confidence 11 1112338899988854 578889999999999999875443 4566 8 899999999985 67888888 99
Q ss_pred CeEEEEEeCCcEEE
Q psy10778 446 SILRLHTINAQLIT 459 (556)
Q Consensus 446 ~~I~iwdi~g~~i~ 459 (556)
|.+..||.++..+.
T Consensus 246 Gslw~wdas~~~l~ 259 (319)
T KOG4714|consen 246 GSLWHWDASTTFLS 259 (319)
T ss_pred CcEEEEcCCCceEE
Confidence 99999999875554
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00018 Score=73.53 Aligned_cols=217 Identities=12% Similarity=0.070 Sum_probs=139.3
Q ss_pred CeEEEEeCCCCCCcc-eEcCCCCCceEEEEEcCCC--CEEEE-----EeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 303 NLIRLKMSKELPATP-VIRPPLGATIATATTAPDC--HTLWL-----GLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 303 g~I~lw~~~~~~~~~-~~~~~h~~~V~~i~~s~dg--~~l~t-----gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++++++ ++.... -+..-...+|+..+|+|.+ ..||. ++.++++++|.+..+ ..+.+-.-.
T Consensus 152 ~sl~i~e~-t~n~~~~p~~~lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~---------s~l~tk~lf 221 (561)
T COG5354 152 SSLYIHEI-TDNIEEHPFKNLRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKN---------SVLVTKNLF 221 (561)
T ss_pred CeEEEEec-CCccccCchhhccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCC---------CeeeeeeeE
Confidence 56777775 222111 1111123568888999863 34443 357788999998754 111211111
Q ss_pred CccEEEEEEccCCCEEEEE------c-----CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 375 SACVTDLYLCAGFSVAVSS------S-----EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sg------s-----~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
...=..+.|.+.|+.+..- + ....+.++++... .++.... - .++|...+|.|.++.+++.+.-
T Consensus 222 k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~-~i~V~~~-~-~~pVhdf~W~p~S~~F~vi~g~--- 295 (561)
T COG5354 222 KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITER-SIPVEKD-L-KDPVHDFTWEPLSSRFAVISGY--- 295 (561)
T ss_pred eecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccc-ccceecc-c-cccceeeeecccCCceeEEecc---
Confidence 2223457888888755431 1 1356788888743 3333312 3 6899999999999988877621
Q ss_pred CCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEE-EecCCCCCCeEEEE
Q psy10778 444 GGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLL-TLNTNVALPVIAVT 519 (556)
Q Consensus 444 ~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~-~~~~~h~~~V~~l~ 519 (556)
....+.++|++|.+...+ .+..=+.+.|+ |.+ +++++++- .|.+-+||......+. .+. + ...+-+.
T Consensus 296 ~pa~~s~~~lr~Nl~~~~-Pe~~rNT~~fs--p~~---r~il~agF~nl~gni~i~~~~~rf~~~~~~~-~--~n~s~~~ 366 (561)
T COG5354 296 MPASVSVFDLRGNLRFYF-PEQKRNTIFFS--PHE---RYILFAGFDNLQGNIEIFDPAGRFKVAGAFN-G--LNTSYCD 366 (561)
T ss_pred cccceeecccccceEEec-CCccccccccc--Ccc---cEEEEecCCccccceEEeccCCceEEEEEee-c--CCceEee
Confidence 567899999999854443 44455678899 777 78887654 4789999986655444 565 2 3445668
Q ss_pred EecCCCEEEEEc------CCCcEEEEEcCCC
Q psy10778 520 YSCDSQHLYASN------TEGLVIIWESSSH 544 (556)
Q Consensus 520 ~s~dg~~l~sgs------~Dg~V~vwdl~~~ 544 (556)
|+||++++.+.. .|..+.|||+...
T Consensus 367 wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 367 WSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred ccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 999999988765 3778999999763
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.31 E-value=0.00034 Score=68.94 Aligned_cols=212 Identities=16% Similarity=0.183 Sum_probs=133.5
Q ss_pred EEEeCCCCCCcceEcCCCC-CceEEEEEcCCCCEEEEEe-----CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 306 RLKMSKELPATPVIRPPLG-ATIATATTAPDCHTLWLGL-----TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 306 ~lw~~~~~~~~~~~~~~h~-~~V~~i~~s~dg~~l~tgs-----~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
.++|..+++....+..... .--=.-+|++||++|++.= ..|.|-|||...+ .+.+..+..|.-.-.
T Consensus 31 ~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~--------~~ri~E~~s~GIGPH 102 (305)
T PF07433_consen 31 LVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG--------YRRIGEFPSHGIGPH 102 (305)
T ss_pred EEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC--------cEEEeEecCCCcChh
Confidence 4466666555544432100 0111356999999999863 4589999998832 134456667766667
Q ss_pred EEEEccCCCEEEEEc------------------CCCcEEEEeCCCCeEEEEeCCC---CCCCCeeEEEEeCCCCeEEEEe
Q psy10778 380 DLYLCAGFSVAVSSS------------------EDGTCLLWDINTIGYIREIPCV---DPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs------------------~Dg~I~iwdl~~~~~v~~l~~~---h~~~~V~~l~~sp~~~~i~s~s 438 (556)
.+.+.|||+.|+.+- .+-++..-|..+|+.+.+...+ | ...|+.++++++|..++..-
T Consensus 103 el~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~-~lSiRHLa~~~~G~V~~a~Q 181 (305)
T PF07433_consen 103 ELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLH-QLSIRHLAVDGDGTVAFAMQ 181 (305)
T ss_pred hEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCcccc-ccceeeEEecCCCcEEEEEe
Confidence 788999997776643 1235667778888877663320 4 56899999999976655543
Q ss_pred ecCcCCC--CeEEEEEeCCcEEEEee--------cCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 439 QTTKTGG--SILRLHTINAQLITSLA--------SELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 439 ~~~~~~d--~~I~iwdi~g~~i~~~~--------~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
..+...+ --|-+++- ++.+..+. ....+-+|+++ .++ ..+ +|+-..|.+.+||..+++.+...
T Consensus 182 ~qg~~~~~~PLva~~~~-g~~~~~~~~p~~~~~~l~~Y~gSIa~~--~~g---~~ia~tsPrGg~~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 182 YQGDPGDAPPLVALHRR-GGALRLLPAPEEQWRRLNGYIGSIAAD--RDG---RLIAVTSPRGGRVAVWDAATGRLLGSV 255 (305)
T ss_pred cCCCCCccCCeEEEEcC-CCcceeccCChHHHHhhCCceEEEEEe--CCC---CEEEEECCCCCEEEEEECCCCCEeecc
Confidence 2221111 12333333 33233332 25789999999 777 555 55557889999999999998887
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCCcEE
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEGLVI 537 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~ 537 (556)
. -..+..++-.+++ ++++.+ .|.+.
T Consensus 256 ~---l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 256 P---LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred c---cCceeeeeecCCc-eEEeCC-CccEE
Confidence 6 2456777777766 555544 44443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.29 E-value=1.5e-06 Score=58.43 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=35.1
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
++.++.+|.+.|++++|+|++..+++|+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4578999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG1787|consensus | Back alignment and domain information |
|---|
Probab=98.26 E-value=1.9e-07 Score=105.47 Aligned_cols=182 Identities=13% Similarity=-0.092 Sum_probs=148.7
Q ss_pred CCCCCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccC
Q psy10778 4 AVGGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLA 83 (556)
Q Consensus 4 ~~~~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~ 83 (556)
.-+|..++.+||+ ||+..+-+.+|+-|.+||+.+-..+++++||+.+++|..+..+|+.. .+-+..+++|.+.-.+-|
T Consensus 934 ~s~D~tI~~~~~s-~~~~~g~~~~~~s~~~e~~~lt~~~~~~~~~~~~~~~s~v~~~~~~~-~~~i~~~~gl~l~~~~~~ 1011 (1126)
T KOG1787|consen 934 SSEDGTIPLLYWS-HISSIGDIVVSGSAPEEFTTLTGQEASGKFSLVDAELSLVISGAKGG-LCLIHLVGGLLLRLLEHP 1011 (1126)
T ss_pred cCCCcceeeeeec-cccccccccccccccCccchheecccceeeeecchhhhhhhhhcccc-cceeeeecchhhhcccCc
Confidence 4578889999999 99999999999999999999999999999999999999999999964 355778999999999999
Q ss_pred cceecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCcc
Q psy10778 84 DILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPAT 163 (556)
Q Consensus 84 ~~~~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~ 163 (556)
++..+.....++...+......+..|.|...+-. .+|.+.|.-..++||+|++| +..+.+.+-...
T Consensus 1012 ~~~~~~~~~s~s~t~~~l~l~~~~~~v~~t~~~~-------~~~~~~I~v~~~~~~~l~~~-------~~~~~~~~~~i~ 1077 (1126)
T KOG1787|consen 1012 INLSILGLISLSETINCLELYEPGRFVNYTKNGK-------DDEQRHIEVGSEDEILLTGG-------WQMANLEKLYIY 1077 (1126)
T ss_pred cceechhhhhhcccccchhhccccccceeccccc-------cccccceEeecccchhhcch-------hhhccccceEEE
Confidence 9999999999999999999999999999444333 89999999999999999999 667777777766
Q ss_pred ccc-cccCCCCCHHHHHHHH--HHHHhcCCcccccccCCCCC
Q psy10778 164 YYG-FDIAAIPDPLERTAWE--TMIRTYGQTPRQLFKSAHPM 202 (556)
Q Consensus 164 y~~-~~~~~~~d~~~~~~~~--~~~~~~g~~p~~lf~~~h~~ 202 (556)
|.. ..+..+.....+..+. .++.-.+.++. -|+.-|++
T Consensus 1078 ~~~~~~i~~~s~~~sq~~~~~~~~~~~~~~~~~-~fn~~~~~ 1118 (1126)
T KOG1787|consen 1078 FGNGAGIPAISLTFSQRLLFSGDRSDSISAFES-DFNRWHYE 1118 (1126)
T ss_pred ecCCCCccccccccchhhhhcCccccchhccch-hhcccccc
Confidence 663 6666777766665542 22333344433 25555554
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00049 Score=72.21 Aligned_cols=220 Identities=10% Similarity=0.052 Sum_probs=129.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC----ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA----TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~----~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.+..+..+|.+..+|.++++.+-........ ...+-.. .+..++.++.+|.+..++..++...-+. ....
T Consensus 162 ~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v--~~~~v~~~~~~g~v~a~d~~~G~~~W~~----~~~~ 235 (394)
T PRK11138 162 LVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT--AFGGAIVGGDNGRVSAVLMEQGQLIWQQ----RISQ 235 (394)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE--ECCEEEEEcCCCEEEEEEccCChhhhee----cccc
Confidence 5566778999999999998876555422110 0001111 1245777788898888887765211000 0000
Q ss_pred ee-CCC-ccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 371 LL-GHS-ACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 371 l~-~h~-~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
-. .+. .....+..+| .+..++.++.+|.+...|..+|+.+.+... .. ...+.. .++.++.++ .++
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~---~~-~~~~~~--~~~~vy~~~-----~~g 304 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY---GS-VNDFAV--DGGRIYLVD-----QND 304 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC---CC-ccCcEE--ECCEEEEEc-----CCC
Confidence 00 000 0001111112 245677777899999999999987765543 22 122222 356777777 789
Q ss_pred eEEEEEeC-CcEEEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEE-EEEec
Q psy10778 447 ILRLHTIN-AQLITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIA-VTYSC 522 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~s~ 522 (556)
.+..+|.. |+.+-.... .....+.... + ..|++++.+|.|...|..+|+.+..... ....+.+ ..+.
T Consensus 305 ~l~ald~~tG~~~W~~~~~~~~~~~sp~v~---~----g~l~v~~~~G~l~~ld~~tG~~~~~~~~-~~~~~~s~P~~~- 375 (394)
T PRK11138 305 RVYALDTRGGVELWSQSDLLHRLLTAPVLY---N----GYLVVGDSEGYLHWINREDGRFVAQQKV-DSSGFLSEPVVA- 375 (394)
T ss_pred eEEEEECCCCcEEEcccccCCCcccCCEEE---C----CEEEEEeCCCEEEEEECCCCCEEEEEEc-CCCcceeCCEEE-
Confidence 99999986 776654321 1122222232 3 4788899999999999999999888763 2222322 2222
Q ss_pred CCCEEEEEcCCCcEEEEEc
Q psy10778 523 DSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl 541 (556)
+..|+.++.||.|+.+++
T Consensus 376 -~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 376 -DDKLLIQARDGTVYAITR 393 (394)
T ss_pred -CCEEEEEeCCceEEEEeC
Confidence 457888999999998875
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.25 E-value=2.2e-05 Score=85.00 Aligned_cols=187 Identities=14% Similarity=0.167 Sum_probs=132.7
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP 414 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~ 414 (556)
++..++-|+-...+..+|+.+. +..+...-..+.|+-++ .+++.+..|...|+|.+-|.++.+.+.++.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~---------~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~ 214 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTE---------KETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFD 214 (1118)
T ss_pred CCcceeecchhhheeeeecccc---------eeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeee
Confidence 3456777777777888888765 22233333333455444 457899999999999999999999999999
Q ss_pred CCCCCCCeeEEEEeCCCCeEEEEeecCc----CCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC
Q psy10778 415 CVDPNTPVSHVTMSETNGEIASVLQTTK----TGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS 489 (556)
Q Consensus 415 ~~h~~~~V~~l~~sp~~~~i~s~s~~~~----~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~ 489 (556)
. | .+.|..+... |+.+++++.+.. ..|..|++||++ -+.+.-+.......-+.|. |.-. ..+++.+.
T Consensus 215 a-H-s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~--Psl~--t~~~V~S~ 286 (1118)
T KOG1275|consen 215 A-H-SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFH--PSLT--TRLAVTSQ 286 (1118)
T ss_pred c-c-ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhc--cccc--ceEEEEec
Confidence 9 9 8988877664 788888875431 146778999998 4444444333333445666 3322 57888888
Q ss_pred CCeEEEEeCCCC-eE---EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 490 DGTIQLWSGYKL-AH---LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 490 dg~I~iwd~~~~-~~---~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
.|...+-|..+. .+ +..+. .....+.++++|++|..++.|..+|.|.+|.-
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~v~-p~~s~i~~fDiSsn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKMVN-PNGSGISAFDISSNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceeeccccccCCCccceeEEc-cCCCcceeEEecCCCceEEEecccCcEeeecC
Confidence 899999984322 11 22222 23456999999999999999999999999983
|
|
| >KOG1275|consensus | Back alignment and domain information |
|---|
Probab=98.24 E-value=1.3e-05 Score=86.86 Aligned_cols=177 Identities=11% Similarity=0.171 Sum_probs=132.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
-+.+|+-...+..+|+.+.+.......+ .+.|+-++ .+++.+.+|...|+|.+-|..+. +.++++..|
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~-a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~---------~~iht~~aH 216 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVS-ASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSF---------ETIHTFDAH 216 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeecc-CCceEEEE--ecCcEEEeecccceEEeecCCcC---------ceeeeeecc
Confidence 6778888888888998887766655432 23466555 46789999999999999998876 778999999
Q ss_pred CccEEEEEEccCCCEEEEEcC---------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSE---------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTG 444 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~---------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~ 444 (556)
++.|.++... |++|++++. |.-|+|||++..+.+.-+.- + ....-+.|.|. ...+++++ .
T Consensus 217 s~siSDfDv~--GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~-~--~~P~flrf~Psl~t~~~V~S-----~ 286 (1118)
T KOG1275|consen 217 SGSISDFDVQ--GNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQF-P--YGPQFLRFHPSLTTRLAVTS-----Q 286 (1118)
T ss_pred ccceeeeecc--CCeEEEeecccccccccccchhhhhhhhhhhccCCccc-c--cCchhhhhcccccceEEEEe-----c
Confidence 9999887665 889999874 56689999998776666555 3 33356777775 34566666 6
Q ss_pred CCeEEEEEeC--CcE-EE--Ee-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 445 GSILRLHTIN--AQL-IT--SL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 445 d~~I~iwdi~--g~~-i~--~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
.|...+.|.. +.+ .. .+ ...+.+.++++| +.| +.++.|..+|.|.+|.-
T Consensus 287 sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiS--sn~---~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 287 SGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDIS--SNG---DALAFGDHEGHVNLWAD 341 (1118)
T ss_pred ccceeeccccccCCCccceeEEccCCCcceeEEec--CCC---ceEEEecccCcEeeecC
Confidence 8889988843 222 22 22 345669999999 888 89999999999999973
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.00023 Score=79.77 Aligned_cols=195 Identities=14% Similarity=0.106 Sum_probs=125.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccC-----------ccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAS-----------TNKIE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~-----------~~~~~ 363 (556)
-++.+..+|.|.+-|.++......- .-..+|.+++|+||++.++..+.++++.+-...-..- .++..
T Consensus 82 ~i~v~~~~G~iilvd~et~~~eivg--~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v 159 (1265)
T KOG1920|consen 82 SICVITALGDIILVDPETLELEIVG--NVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFV 159 (1265)
T ss_pred eEEEEecCCcEEEEcccccceeeee--eccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccc
Confidence 3556678888888888765433221 2457899999999999999999888887654321100 00000
Q ss_pred cc---CCCeEeeC---------------------CCccEEEEEEccCCCEEEEE-----cCCCcEEEEeCCCCeEEEEeC
Q psy10778 364 FC---KPPTILLG---------------------HSACVTDLYLCAGFSVAVSS-----SEDGTCLLWDINTIGYIREIP 414 (556)
Q Consensus 364 ~~---~~~~~l~~---------------------h~~~V~~l~~s~~~~~l~sg-----s~Dg~I~iwdl~~~~~v~~l~ 414 (556)
.. +.-..+.| -.+.=+.|+|-.||+++++. ...+.++|||-+ |..-.+-.
T Consensus 160 ~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drE-g~Lns~se 238 (1265)
T KOG1920|consen 160 NVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDRE-GALNSTSE 238 (1265)
T ss_pred eecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEeccc-chhhcccC
Confidence 00 11112221 11223468999999988873 333799999977 43322222
Q ss_pred CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee----c-CCCeEEEEEeeCCCCCcceEEEE---
Q psy10778 415 CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA----S-ELRITSVTFSNAPEGVSQNVIVT--- 486 (556)
Q Consensus 415 ~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~----~-~~~i~~i~~s~~pdg~~~~~l~t--- 486 (556)
. . .+.-.+++|-|.|..|++..... .++.|.+|.-||-...++. . ...+..++|+ .++ .+|++
T Consensus 239 ~-~-~~l~~~LsWkPsgs~iA~iq~~~--sd~~IvffErNGL~hg~f~l~~p~de~~ve~L~Wn--s~s---diLAv~~~ 309 (1265)
T KOG1920|consen 239 P-V-EGLQHSLSWKPSGSLIAAIQCKT--SDSDIVFFERNGLRHGEFVLPFPLDEKEVEELAWN--SNS---DILAVVTS 309 (1265)
T ss_pred c-c-cccccceeecCCCCeEeeeeecC--CCCcEEEEecCCccccccccCCcccccchheeeec--CCC---Cceeeeec
Confidence 2 2 34556899999999998876543 5668999999876655442 2 2349999999 677 67877
Q ss_pred EeCCCeEEEEeCCCC
Q psy10778 487 GHSDGTIQLWSGYKL 501 (556)
Q Consensus 487 g~~dg~I~iwd~~~~ 501 (556)
......|++|-+.+-
T Consensus 310 ~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 310 NLENSLVQLWTTGNY 324 (1265)
T ss_pred ccccceEEEEEecCe
Confidence 445556999987543
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0014 Score=68.89 Aligned_cols=232 Identities=11% Similarity=0.056 Sum_probs=133.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..++.+|.+..+|.++++..-..... +.+.+--.. .+..+++++.+|.+.-+|..++...-+.....+...+.+.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~--~~~~ssP~v-~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~ 198 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA--GEALSRPVV-SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGE 198 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC--CceecCCEE-ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCC
Confidence 4556778999999999999877665432 222211111 2356777888899999998876211000000000001111
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC--CC---eeEEEEeC--CCCeEEEEeecCcCCCCe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN--TP---VSHVTMSE--TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~--~~---V~~l~~sp--~~~~i~s~s~~~~~~d~~ 447 (556)
..++. .+..++.++.+|.+...|..+|+.+.......+. .. ...+..+| .++.++.++ .++.
T Consensus 199 ~sP~v------~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~-----~~g~ 267 (394)
T PRK11138 199 SAPAT------AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALA-----YNGN 267 (394)
T ss_pred CCCEE------ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEE-----cCCe
Confidence 12221 1235667788999999999998876554320000 00 01111122 245666666 7889
Q ss_pred EEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE
Q psy10778 448 LRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526 (556)
Q Consensus 448 I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 526 (556)
+..+|.. |+.+....... ...+... + ..+++++.+|.+..+|..+++.+............+.... +..
T Consensus 268 l~ald~~tG~~~W~~~~~~-~~~~~~~----~---~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~g~ 337 (394)
T PRK11138 268 LVALDLRSGQIVWKREYGS-VNDFAVD----G---GRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--NGY 337 (394)
T ss_pred EEEEECCCCCEEEeecCCC-ccCcEEE----C---CEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--CCE
Confidence 9999986 77766543322 1122222 3 4677788899999999999987765532111112222222 457
Q ss_pred EEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 527 LYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 527 l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|+.++.||.|++.|..+++.+...
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEEE
Confidence 788999999999999887765443
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=98.16 E-value=8.9e-07 Score=94.94 Aligned_cols=193 Identities=16% Similarity=0.142 Sum_probs=137.8
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-C-cE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-G-TC 399 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g-~I 399 (556)
.|...-+|++|+.+.+.|++|+..|.|+++++.++ .......+|.++|+-+.-+.+|..+++.+.- . ..
T Consensus 1099 d~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG---------~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Pls 1169 (1516)
T KOG1832|consen 1099 DETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSG---------SMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLS 1169 (1516)
T ss_pred ccccceeeEEeecCCceEEeeeccceEEEEEccCc---------cccccccccccccccccccCCcceeeeeccccCchH
Confidence 57788999999999999999999999999999988 3446678999999999999999876665433 2 56
Q ss_pred EEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-e----cCCCeEEEEE
Q psy10778 400 LLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-A----SELRITSVTF 472 (556)
Q Consensus 400 ~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~----~~~~i~~i~~ 472 (556)
.+|++.+ +....++.. -.++.|+.....-+.|+ ......+||+. +..+.++ . ....-++..|
T Consensus 1170 aLW~~~s~~~~~Hsf~e------d~~vkFsn~~q~r~~gt-----~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1170 ALWDASSTGGPRHSFDE------DKAVKFSNSLQFRALGT-----EADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred HHhccccccCccccccc------cceeehhhhHHHHHhcc-----cccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 7899875 334444443 45788887765556666 56789999997 5444442 1 2223377889
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+ |+. .+++ .|| .+||++..+.++.|. ..... ..-.|+|+|..++.-+ -|||+++-+.+..+.
T Consensus 1239 s--P~D---~LIl---ndG--vLWDvR~~~aIh~FD-~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP 1300 (1516)
T KOG1832|consen 1239 S--PCD---TLIL---NDG--VLWDVRIPEAIHRFD-QFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVP 1300 (1516)
T ss_pred C--CCc---ceEe---eCc--eeeeeccHHHHhhhh-hheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCc
Confidence 9 765 4444 244 489999888777776 22211 2336999999888776 489999866554443
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0014 Score=64.53 Aligned_cols=205 Identities=14% Similarity=0.177 Sum_probs=131.6
Q ss_pred EEEEEcC-CCCEEEEEeCCCc-EEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc-----CCCcEE
Q psy10778 328 ATATTAP-DCHTLWLGLTSGN-ILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS-----EDGTCL 400 (556)
Q Consensus 328 ~~i~~s~-dg~~l~tgs~Dg~-I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-----~Dg~I~ 400 (556)
..++.+| .+..++.+-.-|+ ..+||..++... .......-+.+.|| -.||+||++|++.- ..|.|-
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~-~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLL-QRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCcee-eEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence 4566777 4566667766665 567887766221 11122334566777 57999999998853 358999
Q ss_pred EEeCC-CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-------------cCCCCeEEEEEeC-CcEEEEee---
Q psy10778 401 LWDIN-TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT-------------KTGGSILRLHTIN-AQLITSLA--- 462 (556)
Q Consensus 401 iwdl~-~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~-------------~~~d~~I~iwdi~-g~~i~~~~--- 462 (556)
|||.. +.+.+..+.. + .-....+.+.||++.|+++-.-- ...+..+...|.. |+++....
T Consensus 81 Vyd~~~~~~ri~E~~s-~-GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~ 158 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPS-H-GIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPP 158 (305)
T ss_pred EEECcCCcEEEeEecC-C-CcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCc
Confidence 99999 5567778877 6 66677889999998888764211 1133455556554 77776643
Q ss_pred --cCCCeEEEEEeeCCCCCcceEEEEEeCCCe-------EEEEeCCCCeEEEEecC------CCCCCeEEEEEecCCCEE
Q psy10778 463 --SELRITSVTFSNAPEGVSQNVIVTGHSDGT-------IQLWSGYKLAHLLTLNT------NVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 463 --~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-------I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~dg~~l 527 (556)
+.-.|..+++. .+| .+++..-..|. |-+++. ++.+..+.. ....-+-+|++++++..+
T Consensus 159 ~~~~lSiRHLa~~--~~G---~V~~a~Q~qg~~~~~~PLva~~~~--g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~i 231 (305)
T PF07433_consen 159 DLHQLSIRHLAVD--GDG---TVAFAMQYQGDPGDAPPLVALHRR--GGALRLLPAPEEQWRRLNGYIGSIAADRDGRLI 231 (305)
T ss_pred cccccceeeEEec--CCC---cEEEEEecCCCCCccCCeEEEEcC--CCcceeccCChHHHHhhCCceEEEEEeCCCCEE
Confidence 34578889988 777 34443333322 334432 222222221 224668899999999877
Q ss_pred E-EEcCCCcEEEEEcCCCCCcC
Q psy10778 528 Y-ASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 528 ~-sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+ |+-..|.+.+||..++..+.
T Consensus 232 a~tsPrGg~~~~~d~~tg~~~~ 253 (305)
T PF07433_consen 232 AVTSPRGGRVAVWDAATGRLLG 253 (305)
T ss_pred EEECCCCCEEEEEECCCCCEee
Confidence 5 45567899999999876543
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.0012 Score=63.69 Aligned_cols=184 Identities=13% Similarity=0.069 Sum_probs=110.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-eC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-LG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~~ 373 (556)
.+..++.++.|..+|..+++.+........ +.... ..++..+++++.++.++.+|..++ +.+... ..
T Consensus 38 ~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~~-~~~~~~v~v~~~~~~l~~~d~~tG---------~~~W~~~~~ 105 (238)
T PF13360_consen 38 RVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGAP-VVDGGRVYVGTSDGSLYALDAKTG---------KVLWSIYLT 105 (238)
T ss_dssp EEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSGE-EEETTEEEEEETTSEEEEEETTTS---------CEEEEEEE-
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEeecccc--cccee-eecccccccccceeeeEecccCCc---------ceeeeeccc
Confidence 555567999999999999887766654221 11111 123467777778888888887766 222221 11
Q ss_pred CC---ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC----------eeEEEEeCCCCeEEEEeec
Q psy10778 374 HS---ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP----------VSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 374 h~---~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~----------V~~l~~sp~~~~i~s~s~~ 440 (556)
.. ...........+..++.+..++.+..+|+++|+.+..... . ... +..-....++ .+..+.
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~-- 180 (238)
T PF13360_consen 106 SSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPV-G-EPRGSSPISSFSDINGSPVISDG-RVYVSS-- 180 (238)
T ss_dssp SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEES-S-TT-SS--EEEETTEEEEEECCTT-EEEEEC--
T ss_pred cccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeec-C-CCCCCcceeeecccccceEEECC-EEEEEc--
Confidence 10 1112222222377888888899999999999999877655 3 211 1122222233 666665
Q ss_pred CcCCCCe-EEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 441 TKTGGSI-LRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 441 ~~~~d~~-I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
.++. +.+ |+. |+.+.... ...+..+ .. .++ ..|++++.++.|..||+.+++.+.+
T Consensus 181 ---~~g~~~~~-d~~tg~~~w~~~-~~~~~~~-~~--~~~---~~l~~~~~~~~l~~~d~~tG~~~W~ 237 (238)
T PF13360_consen 181 ---GDGRVVAV-DLATGEKLWSKP-ISGIYSL-PS--VDG---GTLYVTSSDGRLYALDLKTGKVVWQ 237 (238)
T ss_dssp ---CTSSEEEE-ETTTTEEEEEEC-SS-ECEC-EE--CCC---TEEEEEETTTEEEEEETTTTEEEEE
T ss_pred ---CCCeEEEE-ECCCCCEEEEec-CCCccCC-ce--eeC---CEEEEEeCCCEEEEEECCCCCEEeE
Confidence 5664 555 887 66554333 3333331 12 445 5777777999999999999997654
|
... |
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=0.00049 Score=74.67 Aligned_cols=203 Identities=8% Similarity=0.091 Sum_probs=129.2
Q ss_pred CCcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCc-eEEEEEcCCCCEEEEEeCCCc-----EEEEEeeeccCcccccc
Q psy10778 291 AGAGMICWNECDNLIRLKMSKELPATPVIRPPLGAT-IATATTAPDCHTLWLGLTSGN-----ILVYEYELNASTNKIEF 364 (556)
Q Consensus 291 ~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~-V~~i~~s~dg~~l~tgs~Dg~-----I~vwd~~~~~~~~~~~~ 364 (556)
+.++.++.|+.||.|.+.+..- +...-++ ++..+ |..+-...+..+|++.+.|+. ++||+++....+..+
T Consensus 33 s~~~~vvigt~~G~V~~Ln~s~-~~~~~fq-a~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP-- 108 (933)
T KOG2114|consen 33 SSTGSVVIGTADGRVVILNSSF-QLIRGFQ-AYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSP-- 108 (933)
T ss_pred CCCceEEEeeccccEEEecccc-eeeehhe-ecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCc--
Confidence 3445899999999998886542 1212222 34444 444444444468888877754 899999865322111
Q ss_pred cCCC--eEeeC-----CCccEEEEEEccCCCEEEEEcCCCcEEEEe--CCCCe---EEEEeCCCCCCCCeeEEEEeCCCC
Q psy10778 365 CKPP--TILLG-----HSACVTDLYLCAGFSVAVSSSEDGTCLLWD--INTIG---YIREIPCVDPNTPVSHVTMSETNG 432 (556)
Q Consensus 365 ~~~~--~~l~~-----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd--l~~~~---~v~~l~~~h~~~~V~~l~~sp~~~ 432 (556)
.++ ..+.. ...++.+++++.+-+.+|.|-.+|.|..+. +.+.+ ......+ ..+|+.+++..++.
T Consensus 109 -~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~---~~pITgL~~~~d~~ 184 (933)
T KOG2114|consen 109 -QCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRG---KEPITGLALRSDGK 184 (933)
T ss_pred -ceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccC---CCCceeeEEecCCc
Confidence 222 12222 356789999999999999999999999883 32211 1122333 68999999999888
Q ss_pred eEEEEeecCcCCCCeEEEEEeCCcE--EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 433 EIASVLQTTKTGGSILRLHTINAQL--ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 433 ~i~s~s~~~~~~d~~I~iwdi~g~~--i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
..+.+. ....|.+|.+.|+. .... .++..+.|.+++ +.. .-+++++. ..+.+|+....++-.++..
T Consensus 185 s~lFv~-----Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~--~~t---~qfIca~~-e~l~fY~sd~~~~cfaf~~ 253 (933)
T KOG2114|consen 185 SVLFVA-----TTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFS--DGT---YQFICAGS-EFLYFYDSDGRGPCFAFEV 253 (933)
T ss_pred eeEEEE-----ecceeEEEEecCCCcceeeeccCCccceeeecC--CCC---ccEEEecC-ceEEEEcCCCcceeeeecC
Confidence 733233 35689999998655 3333 356688888888 333 32444443 4689999877777777764
Q ss_pred CCC
Q psy10778 510 NVA 512 (556)
Q Consensus 510 ~h~ 512 (556)
+|.
T Consensus 254 g~k 256 (933)
T KOG2114|consen 254 GEK 256 (933)
T ss_pred CCe
Confidence 443
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=98.09 E-value=4.7e-05 Score=81.75 Aligned_cols=93 Identities=14% Similarity=0.127 Sum_probs=70.9
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
..|+|.|+--. |+...-+. ..-.+++++|+|..-.|+.|-.-|.+.+|...+. +.-.....|..+|..
T Consensus 39 r~GSVtIfadt-GEPqr~Vt--~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~---------e~htv~~th~a~i~~ 106 (1416)
T KOG3617|consen 39 RGGSVTIFADT-GEPQRDVT--YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTT---------ETHTVVETHPAPIQG 106 (1416)
T ss_pred CCceEEEEecC-CCCCcccc--cceehhhhccChHHHHHhhccccceeEEEecCCc---------eeeeeccCCCCCcee
Confidence 35788887543 33222221 1223677999999888999999999999998764 223445679999999
Q ss_pred EEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 381 LYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 381 l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
+.||++|..++|+..-|.+.+|...
T Consensus 107 l~wS~~G~~l~t~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 107 LDWSHDGTVLMTLDNPGSVHLWRYD 131 (1416)
T ss_pred EEecCCCCeEEEcCCCceeEEEEee
Confidence 9999999999999999999999765
|
|
| >KOG0309|consensus | Back alignment and domain information |
|---|
Probab=98.08 E-value=2.6e-05 Score=82.62 Aligned_cols=181 Identities=17% Similarity=0.241 Sum_probs=126.1
Q ss_pred ceEEEEEcCCC--CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEE
Q psy10778 326 TIATATTAPDC--HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLW 402 (556)
Q Consensus 326 ~V~~i~~s~dg--~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iw 402 (556)
.|-.+.|++.. .+-++......-.+|++...... ..--.+.||...|+.+-|.+... .+++++.|-.+..|
T Consensus 69 ~vad~qws~h~a~~~wiVsts~qkaiiwnlA~ss~~------aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w 142 (1081)
T KOG0309|consen 69 QVADVQWSPHPAKPYWIVSTSNQKAIIWNLAKSSSN------AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW 142 (1081)
T ss_pred hhcceecccCCCCceeEEecCcchhhhhhhhcCCcc------ceEEEEecCccceeccccCCCCCcceeeccccccceee
Confidence 45566777643 33344444455668988654211 22246789999999999998764 88999999999999
Q ss_pred eCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEee-cCCCeEEEEEeeCCCC
Q psy10778 403 DINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLA-SELRITSVTFSNAPEG 478 (556)
Q Consensus 403 dl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~-~~~~i~~i~~s~~pdg 478 (556)
|+++.. ++..... - ......++|+-....+.+.+ .++.|.+||.+ +.++..++ +-..++.+.|.....
T Consensus 143 d~rSp~~p~ys~~~-w-~s~asqVkwnyk~p~vlass-----hg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~- 214 (1081)
T KOG0309|consen 143 DMRSPHRPFYSTSS-W-RSAASQVKWNYKDPNVLASS-----HGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKY- 214 (1081)
T ss_pred eccCCCcceeeeec-c-cccCceeeecccCcchhhhc-----cCCceEEEeccCCCcceEEecccceeeehHHHhhhhh-
Confidence 999753 4444444 3 46678899997766666666 78899999998 55666664 556778888874334
Q ss_pred CcceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecCCC
Q psy10778 479 VSQNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 479 ~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
..+.+.+.||+|++||..... .-+++. ...+|..-.+.|-|.
T Consensus 215 ---s~~~s~~~d~tvkfw~y~kSt~e~~~~vt--t~~piw~~r~~Pfg~ 258 (1081)
T KOG0309|consen 215 ---SEIMSSSNDGTVKFWDYSKSTTESKRTVT--TNFPIWRGRYLPFGE 258 (1081)
T ss_pred ---hhhcccCCCCceeeecccccccccceecc--ccCcceeccccccCc
Confidence 368889999999999985433 333333 356777777777553
|
|
| >KOG2114|consensus | Back alignment and domain information |
|---|
Probab=98.07 E-value=0.00024 Score=77.00 Aligned_cols=196 Identities=15% Similarity=0.229 Sum_probs=128.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCcc-EEEEEEccCCCEEEEEcCCC-----cE
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSAC-VTDLYLCAGFSVAVSSSEDG-----TC 399 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~sgs~Dg-----~I 399 (556)
.|+| |++.+..+|.|+.+|.|.+.+-.. +.++.++++... |..+....+...|++.++|+ .+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----------~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~ll 94 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF----------QLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLL 94 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc----------eeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEE
Confidence 4555 567888999999999998877442 233556677766 55444444446788877665 48
Q ss_pred EEEeCCCC------eEE---EEeC--CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-----C-cEEEEee
Q psy10778 400 LLWDINTI------GYI---REIP--CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-----A-QLITSLA 462 (556)
Q Consensus 400 ~iwdl~~~------~~v---~~l~--~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-----g-~~i~~~~ 462 (556)
+|||++.. .++ +.+. .+-...++.+++++.+-..||+|- .+|.|..+.-+ | +......
T Consensus 95 kiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf-----~nG~V~~~~GDi~RDrgsr~~~~~~ 169 (933)
T KOG2114|consen 95 KIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGF-----TNGLVICYKGDILRDRGSRQDYSHR 169 (933)
T ss_pred EEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEe-----cCcEEEEEcCcchhccccceeeecc
Confidence 99998743 233 2222 111157899999999999999998 89999888432 2 2222334
Q ss_pred cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE-EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 463 SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH-LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 463 ~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
..++|+.+++. .++. ..+.+++ ...|.+|.+....+ ...+. .|..++.|..+++....+++++ +..|.+|+.
T Consensus 170 ~~~pITgL~~~--~d~~--s~lFv~T-t~~V~~y~l~gr~p~~~~ld-~~G~~lnCss~~~~t~qfIca~-~e~l~fY~s 242 (933)
T KOG2114|consen 170 GKEPITGLALR--SDGK--SVLFVAT-TEQVMLYSLSGRTPSLKVLD-NNGISLNCSSFSDGTYQFICAG-SEFLYFYDS 242 (933)
T ss_pred CCCCceeeEEe--cCCc--eeEEEEe-cceeEEEEecCCCcceeeec-cCCccceeeecCCCCccEEEec-CceEEEEcC
Confidence 57899999999 6663 2233333 35788998863332 44455 6788899999987655344443 345777877
Q ss_pred CCCC
Q psy10778 542 SSHN 545 (556)
Q Consensus 542 ~~~~ 545 (556)
+..+
T Consensus 243 d~~~ 246 (933)
T KOG2114|consen 243 DGRG 246 (933)
T ss_pred CCcc
Confidence 6543
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.06 E-value=0.00061 Score=69.84 Aligned_cols=228 Identities=9% Similarity=-0.008 Sum_probs=149.3
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCC-ceE-EEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGA-TIA-TATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~-~V~-~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
++.+.+||..++.++..+...... ... -+.|+.+..++|=-. ...++|+++..+ .. ..+.+.++ ...|.
T Consensus 107 ~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D~y~ARvv-~~sl~i~e~t~n-~~-----~~p~~~lr--~~gi~ 177 (561)
T COG5354 107 KNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDDKYVARVV-GSSLYIHEITDN-IE-----EHPFKNLR--PVGIL 177 (561)
T ss_pred cCceeEEeccCceeEeeccccCCcccccceeeeeecchhhhhhc-cCeEEEEecCCc-cc-----cCchhhcc--cccee
Confidence 457999999999877766532221 123 567888777665443 357899997322 11 12223333 45688
Q ss_pred EEEEccCCC--EEEE-----EcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC----cC--CCC
Q psy10778 380 DLYLCAGFS--VAVS-----SSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT----KT--GGS 446 (556)
Q Consensus 380 ~l~~s~~~~--~l~s-----gs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~----~~--~d~ 446 (556)
...|+|.++ .|+. +..++++++|.+..+..+.+-.. . ...=..+.|.+.|.++++-.... .+ ...
T Consensus 178 dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~l-f-k~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 178 DFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNL-F-KVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred eEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeee-E-eecccEEEEecCCceEEEEEEEeeecccceeccc
Confidence 889999753 3443 56789999999987776665443 2 33345688999888876553211 00 236
Q ss_pred eEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 447 ILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 447 ~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
.++++++.++-+... ...++|...+|.|..++ --++.|-..-.+.++|++.. ....+. ...=..+.|+|.++
T Consensus 256 nLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~---F~vi~g~~pa~~s~~~lr~N-l~~~~P---e~~rNT~~fsp~~r 328 (561)
T COG5354 256 NLYLLRITERSIPVEKDLKDPVHDFTWEPLSSR---FAVISGYMPASVSVFDLRGN-LRFYFP---EQKRNTIFFSPHER 328 (561)
T ss_pred eEEEEeecccccceeccccccceeeeecccCCc---eeEEecccccceeecccccc-eEEecC---CcccccccccCccc
Confidence 788999885544443 55789999999943333 34455668889999998654 444443 45556778999999
Q ss_pred EEEEEcCC---CcEEEEEcCCCCCc
Q psy10778 526 HLYASNTE---GLVIIWESSSHNRT 547 (556)
Q Consensus 526 ~l~sgs~D---g~V~vwdl~~~~~~ 547 (556)
+++.++-| |.+-+||..+..+.
T Consensus 329 ~il~agF~nl~gni~i~~~~~rf~~ 353 (561)
T COG5354 329 YILFAGFDNLQGNIEIFDPAGRFKV 353 (561)
T ss_pred EEEEecCCccccceEEeccCCceEE
Confidence 99987765 78999998775443
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.00018 Score=69.15 Aligned_cols=231 Identities=13% Similarity=0.167 Sum_probs=146.7
Q ss_pred eEEeccCCCeEEEEeCCCCC-Ccc----eEcCCC------------CCceEEEEEcCCCC--EEEEEeCCCcEEEEEeee
Q psy10778 295 MICWNECDNLIRLKMSKELP-ATP----VIRPPL------------GATIATATTAPDCH--TLWLGLTSGNILVYEYEL 355 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-~~~----~~~~~h------------~~~V~~i~~s~dg~--~l~tgs~Dg~I~vwd~~~ 355 (556)
|+++|...|.|.++..+... +.. .++ +| ...|..+.|..++. .+...+.|.+|++|.+..
T Consensus 40 YlatGDkgGRVvlfer~~s~~ceykf~teFQ-she~EFDYLkSleieEKin~I~w~~~t~r~hFLlstNdktiKlWKiye 118 (460)
T COG5170 40 YLATGDKGGRVVLFEREKSYGCEYKFFTEFQ-SHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLLSTNDKTIKLWKIYE 118 (460)
T ss_pred eEeecCCCceEEEeecccccccchhhhhhhc-ccccchhhhhhccHHHHhhheeeecCCCcceEEEecCCceeeeeeeec
Confidence 89999888999998765322 100 111 22 24678888886543 466667799999999864
Q ss_pred ccC----------------ccc------c-----------cccCCCeEe-eCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 356 NAS----------------TNK------I-----------EFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 356 ~~~----------------~~~------~-----------~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
... .+. . +...+.+.. ..|.--|.++++..|...++++ .|=.|.+
T Consensus 119 knlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~et~lSa-DdLrINL 197 (460)
T COG5170 119 KNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDKETLLSA-DDLRINL 197 (460)
T ss_pred ccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCchheeeec-cceeeee
Confidence 410 000 0 000122222 4677788999999998888875 5778999
Q ss_pred EeCCCCe---EEEEeCCCCCC-----CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEE-----Ee-------
Q psy10778 402 WDINTIG---YIREIPCVDPN-----TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLIT-----SL------- 461 (556)
Q Consensus 402 wdl~~~~---~v~~l~~~h~~-----~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~-----~~------- 461 (556)
|++.-.. .+..++. | . .-|++..|+|....++-.+. ..|.|++-|++...+. .+
T Consensus 198 Wnl~i~D~sFnIVDiKP-~-nmeeLteVItSaeFhp~~cn~fmYSs----SkG~Ikl~DlRq~alcdn~~klfe~~~D~v 271 (460)
T COG5170 198 WNLEIIDGSFNIVDIKP-H-NMEELTEVITSAEFHPEMCNVFMYSS----SKGEIKLNDLRQSALCDNSKKLFELTIDGV 271 (460)
T ss_pred ccccccCCceEEEeccC-c-cHHHHHHHHhhcccCHhHcceEEEec----CCCcEEehhhhhhhhccCchhhhhhccCcc
Confidence 9876421 2334444 4 2 34778889987654443332 6899999999722111 11
Q ss_pred ec------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC-eEEEEecCCC------------CCCe---EEEE
Q psy10778 462 AS------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL-AHLLTLNTNV------------ALPV---IAVT 519 (556)
Q Consensus 462 ~~------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~~~~~~~h------------~~~V---~~l~ 519 (556)
.+ -+.|..+.|+ +.| +++++-+. -+|++||++.. .++.++.. | ...| -.+.
T Consensus 272 ~~~ff~eivsSISD~kFs--~ng---ryIlsRdy-ltvkiwDvnm~k~pikTi~~-h~~l~~~l~d~YEnDaifdkFeis 344 (460)
T COG5170 272 DVDFFEEIVSSISDFKFS--DNG---RYILSRDY-LTVKIWDVNMAKNPIKTIPM-HCDLMDELNDVYENDAIFDKFEIS 344 (460)
T ss_pred cchhHHHHhhhhcceEEc--CCC---cEEEEecc-ceEEEEecccccCCceeech-HHHHHHHHHhhhhccceeeeEEEE
Confidence 01 2567889999 888 78877664 68999999754 46666642 2 1223 3467
Q ss_pred EecCCCEEEEEcCCCcEEEEE
Q psy10778 520 YSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwd 540 (556)
||.|.+.+++|+-....-++-
T Consensus 345 fSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 345 FSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred ecCCcccccccccccceeeec
Confidence 888888888888776666655
|
|
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00079 Score=69.63 Aligned_cols=221 Identities=9% Similarity=0.000 Sum_probs=143.4
Q ss_pred CeEEEEeCCCCCCcceEcC--CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 303 NLIRLKMSKELPATPVIRP--PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~--~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
..+.|||+.+|.....+.. +....-.-+.||.|++++|.-.. ..|.||+...- .++..-.-....|..
T Consensus 282 ~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf---------~lld~Kslki~gIr~ 351 (698)
T KOG2314|consen 282 QQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSF---------MLLDKKSLKISGIRD 351 (698)
T ss_pred ceEEEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCce---------eeecccccCCccccC
Confidence 5799999999987776654 11112234689999999988776 57888886543 111111123456888
Q ss_pred EEEccCCCEEEEEcC-----CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-----cCCCCeEEE
Q psy10778 381 LYLCAGFSVAVSSSE-----DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT-----KTGGSILRL 450 (556)
Q Consensus 381 l~~s~~~~~l~sgs~-----Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~-----~~~d~~I~i 450 (556)
..|||.+.+||-=+. -..+.+-.+.+++.+++-.. + .-.=..+.|-.+|.+|+.--..- .+.-..+-|
T Consensus 352 FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nl-f-nVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eI 429 (698)
T KOG2314|consen 352 FSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNL-F-NVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEI 429 (698)
T ss_pred cccCCCcceEEEEcccccCCcceEEEEecCccceeeeccc-e-eeeccEEEeccCCcEEEEEEEeeccccccceEeeEEE
Confidence 899999888876432 24567777777777777665 4 33334566777777776543210 001123455
Q ss_pred EEeCC--cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe---CCCeEEEEeCCC----CeEEEEecCCCCCCeEEEEEe
Q psy10778 451 HTINA--QLITSLASELRITSVTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYK----LAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 451 wdi~g--~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~----~~~~~~~~~~h~~~V~~l~~s 521 (556)
+.++. -++........|...+|- |.| +.+++-+ ...++.+|.+.+ .+++..+. ....+.+.|+
T Consensus 430 frireKdIpve~velke~vi~FaWE--P~g---dkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~d---k~~~N~vfws 501 (698)
T KOG2314|consen 430 FRIREKDIPVEVVELKESVIAFAWE--PHG---DKFAVISGNTVKNTVSFYAVETNIKKPSLVKELD---KKFANTVFWS 501 (698)
T ss_pred EEeeccCCCceeeecchheeeeeec--cCC---CeEEEEEccccccceeEEEeecCCCchhhhhhhc---ccccceEEEc
Confidence 55553 245555677899999999 788 4444433 345788887762 23445554 3567889999
Q ss_pred cCCCEEEEEc---CCCcEEEEEcCC
Q psy10778 522 CDSQHLYASN---TEGLVIIWESSS 543 (556)
Q Consensus 522 ~dg~~l~sgs---~Dg~V~vwdl~~ 543 (556)
|.|++++.+. ..|.+..+|+..
T Consensus 502 PkG~fvvva~l~s~~g~l~F~D~~~ 526 (698)
T KOG2314|consen 502 PKGRFVVVAALVSRRGDLEFYDTDY 526 (698)
T ss_pred CCCcEEEEEEecccccceEEEecch
Confidence 9999988754 578999999874
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.00042 Score=74.37 Aligned_cols=93 Identities=14% Similarity=0.101 Sum_probs=72.0
Q ss_pred CCcEEEEeCCC-----CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-c------------E
Q psy10778 396 DGTCLLWDINT-----IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-Q------------L 457 (556)
Q Consensus 396 Dg~I~iwdl~~-----~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~------------~ 457 (556)
++.|.+.|..+ .+.+..+.. ......++++|||+++++++. .+++|.++|+.. + +
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPV---GKsPHGV~vSPDGkylyVank----lS~tVSVIDv~k~k~~~~~~~~~~~~v 367 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPV---PKNPHGVNTSPDGKYFIANGK----LSPTVTVIDVRKLDDLFDGKIKPRDAV 367 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEEC---CCCccceEECCCCCEEEEeCC----CCCcEEEEEChhhhhhhhccCCccceE
Confidence 35688888887 456677766 567889999999999998875 689999999962 2 3
Q ss_pred EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 458 i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
+.+..........+|. ++| +...+-.-|..|..|++..
T Consensus 368 vaevevGlGPLHTaFD--g~G---~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 368 VAEPELGLGPLHTAFD--GRG---NAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred EEeeccCCCcceEEEC--CCC---CEEEeEeecceeEEEehHH
Confidence 4444555566678888 888 7888888899999999865
|
|
| >KOG1832|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=3.7e-06 Score=90.38 Aligned_cols=171 Identities=14% Similarity=0.168 Sum_probs=131.1
Q ss_pred CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
+..+++..|....+|++|+.+.+.|+.|+..|.|+++++.+|.......+ | .++|+.+.-+.+|..+++.+.. ..
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~nc-H-~SavT~vePs~dgs~~Ltsss~---S~ 1166 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNC-H-QSAVTLVEPSVDGSTQLTSSSS---SS 1166 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccc-c-ccccccccccCCcceeeeeccc---cC
Confidence 45677888999999999999999999999999999999999999999999 9 9999999999999988877631 22
Q ss_pred CeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCCeEEEEE
Q psy10778 446 SILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NVALPVIAVTY 520 (556)
Q Consensus 446 ~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~l~~ 520 (556)
.-..+|+.. +...+++. .-.++.|+ ... ..-+.|+......+||+.++..+.++-. +..-.-..+.|
T Consensus 1167 PlsaLW~~~s~~~~~Hsf~---ed~~vkFs--n~~---q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~F 1238 (1516)
T KOG1832|consen 1167 PLSALWDASSTGGPRHSFD---EDKAVKFS--NSL---QFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHF 1238 (1516)
T ss_pred chHHHhccccccCcccccc---ccceeehh--hhH---HHHHhcccccceEEEecccCcHHHHhcCcchhhhhhcccccc
Confidence 356789886 55555543 34567787 332 3445566667789999999987776332 22233367899
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCCCcCeeeccc
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSHNRTPKFLNLT 554 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~~~ 554 (556)
+|+..+++- || .+||++..+.+.+|..++
T Consensus 1239 sP~D~LIln---dG--vLWDvR~~~aIh~FD~ft 1267 (1516)
T KOG1832|consen 1239 SPCDTLILN---DG--VLWDVRIPEAIHRFDQFT 1267 (1516)
T ss_pred CCCcceEee---Cc--eeeeeccHHHHhhhhhhe
Confidence 999887763 55 579999988888877654
|
|
| >KOG1920|consensus | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00061 Score=76.56 Aligned_cols=204 Identities=13% Similarity=0.126 Sum_probs=137.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
++.|.++.|..++..++.+..+|.|.+-|..+. .......-...|.+++|+||..+++..+.++++.+-+
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~----------~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT 137 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETL----------ELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMT 137 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccc----------ceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEe
Confidence 368999999999999999999999999877654 2233334567899999999999999988888877654
Q ss_pred C----CCCeEE-------------------EEeCCC-----------C--------CCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 404 I----NTIGYI-------------------REIPCV-----------D--------PNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 404 l----~~~~~v-------------------~~l~~~-----------h--------~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
- -..+.+ ..+.+. + -.+.=+.|.|--||.++|+..-..
T Consensus 138 ~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~ 217 (1265)
T KOG1920|consen 138 KDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVES 217 (1265)
T ss_pred ccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEec
Confidence 2 110000 111110 0 011123588999999998854333
Q ss_pred cCCCCeEEEEEeCCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEE---eCCCeEEEEeCCCCeEEEEecC---CCCCC
Q psy10778 442 KTGGSILRLHTINAQLITSLA-SELRITSVTFSNAPEGVSQNVIVTG---HSDGTIQLWSGYKLAHLLTLNT---NVALP 514 (556)
Q Consensus 442 ~~~d~~I~iwdi~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg---~~dg~I~iwd~~~~~~~~~~~~---~h~~~ 514 (556)
......|++||.+|.+-..-. ....=.+++|- |.| .++++- .+|+.|.++.. +|-.-..+.. ....+
T Consensus 218 ~~~~RkirV~drEg~Lns~se~~~~l~~~LsWk--Psg---s~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ 291 (1265)
T KOG1920|consen 218 ETGTRKIRVYDREGALNSTSEPVEGLQHSLSWK--PSG---SLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKE 291 (1265)
T ss_pred cCCceeEEEecccchhhcccCcccccccceeec--CCC---CeEeeeeecCCCCcEEEEec-CCccccccccCCcccccc
Confidence 223389999999865443332 23445678998 888 677764 35667989885 3332222211 22445
Q ss_pred eEEEEEecCCCEEEE---EcCCCcEEEEEcCC
Q psy10778 515 VIAVTYSCDSQHLYA---SNTEGLVIIWESSS 543 (556)
Q Consensus 515 V~~l~~s~dg~~l~s---gs~Dg~V~vwdl~~ 543 (556)
|..++|+.++..|++ ......|.+|-+.+
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecC
Confidence 999999999999987 55555699999887
|
|
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0031 Score=59.66 Aligned_cols=109 Identities=11% Similarity=0.013 Sum_probs=76.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++..|+..+.+.-.|.+++.+......+ ..|-+-+.- -|++++.|...|.+++.+..++. ....+..-
T Consensus 25 ~v~igSHs~~~~avd~~sG~~~We~ilg--~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs---------~~w~f~~~ 92 (354)
T KOG4649|consen 25 LVVIGSHSGIVIAVDPQSGNLIWEAILG--VRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGS---------QIWNFVIL 92 (354)
T ss_pred EEEEecCCceEEEecCCCCcEEeehhhC--ceeeeeeEE-ECCEEEEEEccCcEEEEEecchh---------heeeeeeh
Confidence 7888999999999999888765443322 333333332 46789999999999999998872 22222221
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC 415 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~ 415 (556)
..--......+++.++..|+.|++.+..|.++...+.+.+.
T Consensus 93 ~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskc 133 (354)
T KOG4649|consen 93 ETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKC 133 (354)
T ss_pred hhhccceEEcCCCceEEEecCCCcEEEecccccceEEeccc
Confidence 11112234567889999999999999999999888887776
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.0002 Score=75.06 Aligned_cols=73 Identities=11% Similarity=-0.007 Sum_probs=62.8
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
...+.|.|++++|+.+.++.|+.||+|++||..++..... .. .-.++.++|+|+|..+++|+ ..|.+.+||
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka---~~~P~~iaWHp~gai~~V~s-----~qGelQ~FD 327 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KA---EFIPTLIAWHPDGAIFVVGS-----EQGELQCFD 327 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-ee---cccceEEEEcCCCcEEEEEc-----CCceEEEEE
Confidence 5678899999999999999999999999999987633322 33 56688999999999999998 889999999
Q ss_pred eC
Q psy10778 453 IN 454 (556)
Q Consensus 453 i~ 454 (556)
+.
T Consensus 328 ~A 329 (545)
T PF11768_consen 328 MA 329 (545)
T ss_pred ee
Confidence 85
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.93 E-value=3e-06 Score=88.39 Aligned_cols=188 Identities=9% Similarity=0.110 Sum_probs=128.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCCc-ceEcCCCCCceEEEEEcC-CCCEEEEEe----CCCcEEEEEeeeccCcccccccCC
Q psy10778 294 GMICWNECDNLIRLKMSKELPAT-PVIRPPLGATIATATTAP-DCHTLWLGL----TSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~-~~~~~~h~~~V~~i~~s~-dg~~l~tgs----~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.+++.|..+|.|.+-......-. ..+..+|....++++|++ |.+.||+|- .|..+.|||+.+.-..++.
T Consensus 71 cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke----- 145 (783)
T KOG1008|consen 71 CILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKE----- 145 (783)
T ss_pred hhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCcc-----
Confidence 48999999999999877644322 344457888999999997 456777773 4567999999875211111
Q ss_pred CeEee-CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCC
Q psy10778 368 PTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGG 445 (556)
Q Consensus 368 ~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d 445 (556)
...+. +-.....+++|-.+.+++.+|.....+.++|++... .+.-.- . ...+..+.++| .++++++- .+
T Consensus 146 ~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~-~~~~sv-n-Tk~vqG~tVdp~~~nY~cs~------~d 216 (783)
T KOG1008|consen 146 SPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSL-DSVSSV-N-TKYVQGITVDPFSPNYFCSN------SD 216 (783)
T ss_pred ccccccccccCccccccccCcchhhcccccchhhhhhhhhhh-hhhhhh-h-hhhcccceecCCCCCceecc------cc
Confidence 11122 234455688898888899999999999999998432 111111 1 34677888998 66777665 58
Q ss_pred CeEEEEEe-C--CcEEEEeec-----CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCC
Q psy10778 446 SILRLHTI-N--AQLITSLAS-----ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY 499 (556)
Q Consensus 446 ~~I~iwdi-~--g~~i~~~~~-----~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~ 499 (556)
+.|.+||. + ..++..+.+ ..++..++|+|...| .+++.. ..++|+++|+.
T Consensus 217 g~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtg----lla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 217 GDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTG----LLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcc----hhhhhccCcceEEEeccc
Confidence 99999994 2 333333322 245999999976666 555544 55789999984
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=97.92 E-value=0.0043 Score=64.56 Aligned_cols=216 Identities=16% Similarity=0.132 Sum_probs=122.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc-c----ccc-----------------------------cCCCeEe
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTN-K----IEF-----------------------------CKPPTIL 371 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~-~----~~~-----------------------------~~~~~~l 371 (556)
.|+++.++++...|++|..+|.|.||....++..+ + ..+ ..+...+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 48899999999999999999999999987664332 0 000 0122334
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC------CCCCCCeeEEEEeC-----CC---CeEEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC------VDPNTPVSHVTMSE-----TN---GEIASV 437 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~------~h~~~~V~~l~~sp-----~~---~~i~s~ 437 (556)
....++|++++.| +=..++.|.++|.+.|.|++....+..-.. ......++++.|+- |+ -.+++|
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~vG 161 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLVG 161 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEEE
Confidence 4557899999997 455899999999999999986665544111 01135678888762 22 356666
Q ss_pred eecCcCCCCeEEEEEeC----CcEE----EEe-ecCCCeEEEEEeeCCCC----------------CcceEEEEEeCCCe
Q psy10778 438 LQTTKTGGSILRLHTIN----AQLI----TSL-ASELRITSVTFSNAPEG----------------VSQNVIVTGHSDGT 492 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~----g~~i----~~~-~~~~~i~~i~~s~~pdg----------------~~~~~l~tg~~dg~ 492 (556)
. ..|.+.+|.+- |... ... .+.+.+..+..-....| ...+-+++...+..
T Consensus 162 T-----n~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~ 236 (395)
T PF08596_consen 162 T-----NSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD 236 (395)
T ss_dssp E-----TTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred e-----CCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence 6 77999999773 3222 222 34566666653211111 11233445555788
Q ss_pred EEEEeCCCCeEEEEecCCCCCCeEEEEEe-----cCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 493 IQLWSGYKLAHLLTLNTNVALPVIAVTYS-----CDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 493 I~iwd~~~~~~~~~~~~~h~~~V~~l~~s-----~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
++++...+.+...... ........+.+. ..+..|++-..+|.|+++.++.-+.+.
T Consensus 237 irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~ 296 (395)
T PF08596_consen 237 IRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIK 296 (395)
T ss_dssp EEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEE
T ss_pred eEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhh
Confidence 9999998887766654 222334444552 356788888999999999999855443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.00052 Score=68.43 Aligned_cols=231 Identities=13% Similarity=0.146 Sum_probs=134.4
Q ss_pred CcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 292 ~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
..+++..++.++.|+|.|+++......+. .+ ..+.+|+|.-| ..+|+.|-..|.|.|||++.... +...
T Consensus 205 ~~GLl~~asl~nkiki~dlet~~~vssy~-a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~--------~~~e 274 (463)
T KOG1645|consen 205 NEGLLGLASLGNKIKIMDLETSCVVSSYI-AY-NQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEG--------PLME 274 (463)
T ss_pred ccceeeeeccCceEEEEecccceeeehee-cc-CCceeeeeccCCcceeEEeccCceEEEEEccCCCc--------hHhh
Confidence 34589999999999999999877666665 44 78999999976 45788888999999999986521 1111
Q ss_pred eeC--CCccEEEEE------EccCCCEEEEEcCCCcEEEEeCCC----CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 371 LLG--HSACVTDLY------LCAGFSVAVSSSEDGTCLLWDINT----IGYIREIPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 371 l~~--h~~~V~~l~------~s~~~~~l~sgs~Dg~I~iwdl~~----~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
+.+ ...+|..++ ..+.+.+++..+.+ +..|.+.- ...+..+.. .+...+++.++..++++...
T Consensus 275 ~~a~~t~~pv~~i~~~~~n~~f~~gglLv~~lt~--l~f~ei~~s~~~~p~vlele~---pG~cismqy~~~snh~l~ty 349 (463)
T KOG1645|consen 275 LVANVTINPVHKIAPVQPNKIFTSGGLLVFALTV--LQFYEIVFSAECLPCVLELEP---PGICISMQYHGVSNHLLLTY 349 (463)
T ss_pred hhhhhccCcceeecccCccccccccceEEeeehh--hhhhhhhccccCCCcccccCC---CcceeeeeecCccceEEEEe
Confidence 111 122333332 33345555555443 44554431 222333433 56677777777667666554
Q ss_pred ecCc--CCCCeEEE--EEeCCcEEEEeec---CCC-----eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 439 QTTK--TGGSILRL--HTINAQLITSLAS---ELR-----ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 439 ~~~~--~~d~~I~i--wdi~g~~i~~~~~---~~~-----i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
.... .....+-. -+.+|..+..... .+. -+...+.+ ++. .-++.+|++...+.+||.++++.+.+
T Consensus 350 Rs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~~ai~~~-~~n--n~iv~~gd~tn~lil~D~~s~evvQ~ 426 (463)
T KOG1645|consen 350 RSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTTQAIRAV-EDN--NYIVVVGDSTNELILQDPHSFEVVQT 426 (463)
T ss_pred cCCCCCccceeeeeeeccccCceeeeecccccCCcccccccccceecc-ccc--cEEEEecCCcceeEEeccchhheeee
Confidence 2210 01111211 1122444433211 110 01111221 333 03455677778999999999999999
Q ss_pred ecCCCCCCeEEEEEec-CCCEEEEEcCCCcEEEEEcC
Q psy10778 507 LNTNVALPVIAVTYSC-DSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~ 542 (556)
+. ...+|.+++... ++.-++..-.|..++|+..+
T Consensus 427 l~--~~epv~Dicp~~~n~~syLa~LTd~~v~Iyk~e 461 (463)
T KOG1645|consen 427 LA--LSEPVLDICPNDTNGSSYLALLTDDRVHIYKNE 461 (463)
T ss_pred cc--cCcceeecceeecCCcchhhheecceEEEEecC
Confidence 97 358888887654 34333334446688888654
|
|
| >KOG1912|consensus | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00047 Score=73.83 Aligned_cols=232 Identities=9% Similarity=0.000 Sum_probs=144.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC---C-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD---C-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d---g-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++|.+-..|.|.+||...+..+..+. .|.++|..++|-+. . ..|++-....++.+|+..++ +....
T Consensus 81 liAsaD~~GrIil~d~~~~s~~~~l~-~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG---------~k~Wk 150 (1062)
T KOG1912|consen 81 LIASADISGRIILVDFVLASVINWLS-HSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTG---------EKFWK 150 (1062)
T ss_pred eEEeccccCcEEEEEehhhhhhhhhc-CCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCC---------ceeec
Confidence 78888899999999998876666665 68889999999763 3 45666677789999999887 22333
Q ss_pred eeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCC-------CeEEEEeCCCCCCC-----------------C----
Q psy10778 371 LLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINT-------IGYIREIPCVDPNT-----------------P---- 421 (556)
Q Consensus 371 l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~-------~~~v~~l~~~h~~~-----------------~---- 421 (556)
.........|+.+.| |.+.+...+..|.+.+-+.-. ++..+.-.. | .. +
T Consensus 151 ~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd-~-Sdl~~lere~at~ns~ts~~~sa~ 228 (1062)
T KOG1912|consen 151 YDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD-H-SDLAHLERETATGNSTTSTPASAY 228 (1062)
T ss_pred cccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC-c-cchhhhhhhhhccccccCCCcchh
Confidence 333345567788888 444555545556665554321 222222211 2 11 0
Q ss_pred ----eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 422 ----VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 422 ----V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
.-.++|+|.-+.++... ....+.++|+. ...+..... .+.+.-+.+-|++.. ..|.++..||.+.+
T Consensus 229 fity~a~faf~p~~rn~lfi~-----~prellv~dle~~~~l~vvpier~~akfv~vlP~~~r---d~LfclH~nG~lti 300 (1062)
T KOG1912|consen 229 FITYCAQFAFSPHWRNILFIT-----FPRELLVFDLEYECCLAVVPIERGGAKFVDVLPDPRR---DALFCLHSNGRLTI 300 (1062)
T ss_pred HHHHHHhhhcChhhhceEEEE-----eccceEEEcchhhceeEEEEeccCCcceeEeccCCCc---ceEEEEecCCeEEE
Confidence 11356677666555555 57789999998 566666643 345566777755555 78999999999999
Q ss_pred EeCCCC----------------eEEEEecCCCCCCeEEEEEecC-CCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 496 WSGYKL----------------AHLLTLNTNVALPVIAVTYSCD-SQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 496 wd~~~~----------------~~~~~~~~~h~~~V~~l~~s~d-g~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|-.+.. .++..+..-.+..+......|. ...++.--.+|.+.+|++++++.
T Consensus 301 rvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri 368 (1062)
T KOG1912|consen 301 RVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRI 368 (1062)
T ss_pred EEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCc
Confidence 976542 2222221101122223333343 34455556688999999987543
|
|
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00017 Score=76.66 Aligned_cols=129 Identities=11% Similarity=0.107 Sum_probs=91.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.|+.-|.+++++...+.....-..+-.+.+..+..+++..++|.|+..|.|.|+.+... ..+...... ..-..|
T Consensus 47 ~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~-~p~~~~~~t--~~d~~~ 123 (726)
T KOG3621|consen 47 YLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKE-LPRDLDYVT--PCDKSH 123 (726)
T ss_pred eEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhcc-CCCcceeec--cccccC
Confidence 89999999999999998776554443334455666778888888999999999999988763 111111000 111237
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe----EEEEeCCCCCCCCeeEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG----YIREIPCVDPNTPVSHVTMS 428 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~----~v~~l~~~h~~~~V~~l~~s 428 (556)
...|+|++|++++..+.+|...|.|..-.+.+.. ..+.+.. . .+.|-.+...
T Consensus 124 ~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~-~-ds~IVQlD~~ 179 (726)
T KOG3621|consen 124 KCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILS-E-DSEIVQLDYL 179 (726)
T ss_pred CceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeec-c-CcceEEeecc
Confidence 8899999999999999999999999998887621 1222222 2 5667666655
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.84 E-value=0.00015 Score=75.98 Aligned_cols=78 Identities=22% Similarity=0.272 Sum_probs=65.5
Q ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCc
Q psy10778 319 IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGT 398 (556)
Q Consensus 319 ~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 398 (556)
........|.|++++|+.+.++.|+.||.|.+||...+ +..+....-..+.++|+|+|.++++|+..|.
T Consensus 254 tsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~-----------~t~~~ka~~~P~~iaWHp~gai~~V~s~qGe 322 (545)
T PF11768_consen 254 TSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRG-----------VTLLAKAEFIPTLIAWHPDGAIFVVGSEQGE 322 (545)
T ss_pred EEEecCCcceEEecCcccceEEEEecCCeEEEEEcCCC-----------eeeeeeecccceEEEEcCCCcEEEEEcCCce
Confidence 34467789999999999999999999999999998754 2333344556789999999999999999999
Q ss_pred EEEEeCCCC
Q psy10778 399 CLLWDINTI 407 (556)
Q Consensus 399 I~iwdl~~~ 407 (556)
+.+||+.-.
T Consensus 323 lQ~FD~ALs 331 (545)
T PF11768_consen 323 LQCFDMALS 331 (545)
T ss_pred EEEEEeecC
Confidence 999998754
|
|
| >KOG2066|consensus | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00011 Score=78.87 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=112.1
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.++|++++ ++.++-|+.+|.+++.+.. +.. ++... | ... ..+|.++++|+ .||+|.+..+-
T Consensus 39 ~D~is~~av~--~~~~~~GtH~g~v~~~~~~-~~~-~~~~~-~-s~~------~~~Gey~asCS-----~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVH--DKFFALGTHRGAVYLTTCQ-GNP-KTNFD-H-SSS------ILEGEYVASCS-----DDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhh--cceeeeccccceEEEEecC-Ccc-ccccc-c-ccc------ccCCceEEEec-----CCCcEEEeecc
Confidence 3456677776 5689999999999999976 444 44444 4 332 66799999999 89999998885
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCC--CCcceEEEEEeCCCeEEEEeCCC-CeEEE-EecCCCCCCeEEEEEecCCCEEEE
Q psy10778 455 -AQLITSLASELRITSVTFSNAPE--GVSQNVIVTGHSDGTIQLWSGYK-LAHLL-TLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pd--g~~~~~l~tg~~dg~I~iwd~~~-~~~~~-~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++......-..++.+++++ |+ ....+.+++|+..| +.++...- +.... .+. ...++|.++.|. |.++|-
T Consensus 102 ~~~~~~~~df~rpiksial~--Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~-~~eG~I~~i~W~--g~lIAW 175 (846)
T KOG2066|consen 102 TDDEITQYDFKRPIKSIALH--PDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLS-EGEGPIHSIKWR--GNLIAW 175 (846)
T ss_pred CCccceeEecCCcceeEEec--cchhhhhhhheeecCcce-EEEehhhhhcCccceeee-cCccceEEEEec--CcEEEE
Confidence 7777777888999999999 65 22337899999888 77776421 22111 222 457999999997 778887
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
++.+| |+|||+.++..+..+
T Consensus 176 and~G-v~vyd~~~~~~l~~i 195 (846)
T KOG2066|consen 176 ANDDG-VKVYDTPTRQRLTNI 195 (846)
T ss_pred ecCCC-cEEEeccccceeecc
Confidence 77666 899999987665443
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.75 E-value=0.005 Score=62.67 Aligned_cols=216 Identities=13% Similarity=0.122 Sum_probs=124.1
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEc---C----CCCEEEEEeC----------CCcEEEEEeeeccCccccccc
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTA---P----DCHTLWLGLT----------SGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s---~----dg~~l~tgs~----------Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
..|++.|..+.+.+..+.......+++++.. . ...++++|+. .|.|.++++..........
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l-- 79 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKL-- 79 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EE--
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceEE--
Confidence 3577777776666655555555556655543 2 2467887753 2889999998631101111
Q ss_pred CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
+.+.. ....++|++++-- .+. ++.+. .+.|.+|++...+ ....-.. +....+.++... +++|+++. .
T Consensus 80 ~~i~~-~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~-~~~~~i~sl~~~--~~~I~vgD-----~ 147 (321)
T PF03178_consen 80 KLIHS-TEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFY-DSPFYITSLSVF--KNYILVGD-----A 147 (321)
T ss_dssp EEEEE-EEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE--BSSSEEEEEEE--TTEEEEEE-----S
T ss_pred EEEEE-EeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhhee-cceEEEEEEecc--ccEEEEEE-----c
Confidence 11222 3457889998877 344 44433 4789999998777 4443222 103455565555 56888887 5
Q ss_pred CCeEEEEEe--CCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------C--e--EEEEec
Q psy10778 445 GSILRLHTI--NAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------L--A--HLLTLN 508 (556)
Q Consensus 445 d~~I~iwdi--~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------~--~--~~~~~~ 508 (556)
...+.++.. .+..+..+. ....++++.+- .++ +.+++++.+|.+.++.... + + ....+.
T Consensus 148 ~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l--~d~---~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~ 222 (321)
T PF03178_consen 148 MKSVSLLRYDEENNKLILVARDYQPRWVTAAEFL--VDE---DTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFH 222 (321)
T ss_dssp SSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE---SS---SEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE
T ss_pred ccCEEEEEEEccCCEEEEEEecCCCccEEEEEEe--cCC---cEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEE
Confidence 666776644 344333332 34568888887 666 5899999999999987642 2 2 233443
Q ss_pred CCCCCCeEEE---EEec--CCC------EEEEEcCCCcEEEE
Q psy10778 509 TNVALPVIAV---TYSC--DSQ------HLYASNTEGLVIIW 539 (556)
Q Consensus 509 ~~h~~~V~~l---~~s~--dg~------~l~sgs~Dg~V~vw 539 (556)
....|+++ .+.| .+. .++.++.+|.|.+.
T Consensus 223 --lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 223 --LGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp ---SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred --CCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 35678887 5455 222 47778889988743
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.014 Score=56.24 Aligned_cols=195 Identities=15% Similarity=0.131 Sum_probs=105.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC------CCCceEEEEEcCC------CCEEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP------LGATIATATTAPD------CHTLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~------h~~~V~~i~~s~d------g~~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
+||.+...|+|+++|+....+. .+... -...|..+.|.+- ...|++-..+|.++=|-+..+...+-.
T Consensus 57 lLa~a~S~G~i~vfdl~g~~lf-~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~ 135 (282)
T PF15492_consen 57 LLAYAESTGTIRVFDLMGSELF-VIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQ 135 (282)
T ss_pred EEEEEcCCCeEEEEecccceeE-EcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcce
Confidence 8999999999999999754322 22111 2346666666542 124666677788888877543111111
Q ss_pred cccCCCeEe-eCCCccEEEEEEccCCCEEEEEcCCCc-EEEEeCCC-C-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 363 EFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSEDGT-CLLWDINT-I-GYIREIPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 363 ~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~-I~iwdl~~-~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
. ...-.+ ..+...|.++.++|..++|+.|+.... -..+.... | ..-|.+.. .+-.....+.+........
T Consensus 136 e--~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~----~Pyyk~v~~~~~~~~~~~~ 209 (282)
T PF15492_consen 136 E--NHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSD----SPYYKQVTSSEDDITASSK 209 (282)
T ss_pred e--eEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCC----CCcEEEccccCcccccccc
Confidence 0 111122 235779999999999888777664321 00000000 0 01111211 1111111111111111111
Q ss_pred ecCcCCCCeEEEEEeCCcEEEE-eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 439 QTTKTGGSILRLHTINAQLITS-LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~g~~i~~-~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
..+..++.+ .+.... ......|..|..| |+| .+||+.+.+|.|.+|++.+.++.+...
T Consensus 210 -----~~~~~~~~~--~~~fs~~~~~~d~i~kmSlS--Pdg---~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 210 -----RRGLLRIPS--FKFFSRQGQEQDGIFKMSLS--PDG---SLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred -----ccceeeccc--eeeeeccccCCCceEEEEEC--CCC---CEEEEEEcCCeEEEEecCcchhhcccc
Confidence 122222221 111111 1246789999999 999 899999999999999999888777665
|
|
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.73 E-value=0.0019 Score=71.92 Aligned_cols=140 Identities=16% Similarity=0.232 Sum_probs=97.0
Q ss_pred CEEEE-EcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-----CCCeEEEEeecCcCCCCeEEEEEeC--Cc-EE
Q psy10778 388 SVAVS-SSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-----TNGEIASVLQTTKTGGSILRLHTIN--AQ-LI 458 (556)
Q Consensus 388 ~~l~s-gs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-----~~~~i~s~s~~~~~~d~~I~iwdi~--g~-~i 458 (556)
++|+. ......++-.|+.+|+.+..+.. +...+|..++-.. +....++|- .++.+..||.+ |. ++
T Consensus 494 ~mil~~~~~~~~ly~mDLe~GKVV~eW~~-~~~~~v~~~~p~~K~aqlt~e~tflGl-----s~n~lfriDpR~~~~k~v 567 (794)
T PF08553_consen 494 NMILLDPNNPNKLYKMDLERGKVVEEWKV-HDDIPVVDIAPDSKFAQLTNEQTFLGL-----SDNSLFRIDPRLSGNKLV 567 (794)
T ss_pred ceEeecCCCCCceEEEecCCCcEEEEeec-CCCcceeEecccccccccCCCceEEEE-----CCCceEEeccCCCCCcee
Confidence 34443 34567899999999999999988 6233455544321 122334444 67899999997 43 33
Q ss_pred EE----eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 459 TS----LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 459 ~~----~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
.. +.......|++-+ .+| +||+|+.+|.||+||. .++.-++.-.+...+|.+|..+.||++|++.+ +.
T Consensus 568 ~~~~k~Y~~~~~Fs~~aTt--~~G----~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~t 639 (794)
T PF08553_consen 568 DSQSKQYSSKNNFSCFATT--EDG----YIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDVTADGKWILATC-KT 639 (794)
T ss_pred eccccccccCCCceEEEec--CCc----eEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cc
Confidence 22 2245567788777 777 8999999999999994 44433333336679999999999999988766 55
Q ss_pred cEEEEEc
Q psy10778 535 LVIIWES 541 (556)
Q Consensus 535 ~V~vwdl 541 (556)
.|.+++.
T Consensus 640 yLlLi~t 646 (794)
T PF08553_consen 640 YLLLIDT 646 (794)
T ss_pred eEEEEEE
Confidence 7777775
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >KOG2314|consensus | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.005 Score=63.92 Aligned_cols=202 Identities=6% Similarity=0.021 Sum_probs=123.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeC-----------CCcEEEEEeeeccCcccccccCCCeEeeC---CCccEEEEEEccCC
Q psy10778 322 PLGATIATATTAPDCHTLWLGLT-----------SGNILVYEYELNASTNKIEFCKPPTILLG---HSACVTDLYLCAGF 387 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~-----------Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~---h~~~V~~l~~s~~~ 387 (556)
.|. .|.-+.|||..++|+|-+. ...++|||+.++ ...+.+.. ....-.-..||.|+
T Consensus 248 ~Hp-~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG---------~lkrsF~~~~~~~~~WP~frWS~Dd 317 (698)
T KOG2314|consen 248 YHP-GVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATG---------LLKRSFPVIKSPYLKWPIFRWSHDD 317 (698)
T ss_pred cCC-CceeeecCCccceEEEecCCccccCcccCCCceEEEEEcccc---------chhcceeccCCCccccceEEeccCC
Confidence 464 4889999999999999652 157999999988 33333333 11222356899999
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCC
Q psy10778 388 SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SEL 465 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~ 465 (556)
+++|--.. .+|.|++..+..++..-.. . -..|....|+|.+..||.=.-.....-..+.+..+- ++.+++.. ++-
T Consensus 318 Ky~Arm~~-~sisIyEtpsf~lld~Ksl-k-i~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~nlfnV 394 (698)
T KOG2314|consen 318 KYFARMTG-NSISIYETPSFMLLDKKSL-K-ISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTKNLFNV 394 (698)
T ss_pred ceeEEecc-ceEEEEecCceeeeccccc-C-CccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeeccceee
Confidence 99887665 5699998877544322111 2 367899999999888876542111122345566653 44444432 122
Q ss_pred CeEEEEEeeCCCCCcceEEEEEe----------CCCeEEEEeCCCCe-EEEEecCCCCCCeEEEEEecCCCEEEEEcC--
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGH----------SDGTIQLWSGYKLA-HLLTLNTNVALPVIAVTYSCDSQHLYASNT-- 532 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~----------~dg~I~iwd~~~~~-~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-- 532 (556)
.-..+-|. ..| .+|+.-- .-..+.|+.++... ++..+. ....|...+|-|.|..+++-+.
T Consensus 395 sDckLhWQ--k~g---dyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~ve--lke~vi~FaWEP~gdkF~vi~g~~ 467 (698)
T KOG2314|consen 395 SDCKLHWQ--KSG---DYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVE--LKESVIAFAWEPHGDKFAVISGNT 467 (698)
T ss_pred eccEEEec--cCC---cEEEEEEEeeccccccceEeeEEEEEeeccCCCceeee--cchheeeeeeccCCCeEEEEEccc
Confidence 22334454 455 4555321 11235556555443 233333 4678999999999987765543
Q ss_pred -CCcEEEEEcCC
Q psy10778 533 -EGLVIIWESSS 543 (556)
Q Consensus 533 -Dg~V~vwdl~~ 543 (556)
..++.+|.+++
T Consensus 468 ~k~tvsfY~~e~ 479 (698)
T KOG2314|consen 468 VKNTVSFYAVET 479 (698)
T ss_pred cccceeEEEeec
Confidence 35788998884
|
|
| >KOG1645|consensus | Back alignment and domain information |
|---|
Probab=97.70 E-value=0.0019 Score=64.56 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=128.0
Q ss_pred EEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEE
Q psy10778 305 IRLKMSKELPATPVIRPPLGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYL 383 (556)
Q Consensus 305 I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 383 (556)
++..+..+-+....+ ..|...|..++|+|..+ ++..++.+.+|+|.|+++. ..+.....| ..+++++|
T Consensus 175 v~~l~~~~fkssq~l-p~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~---------~~vssy~a~-~~~wSC~w 243 (463)
T KOG1645|consen 175 VQKLESHDFKSSQIL-PGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETS---------CVVSSYIAY-NQIWSCCW 243 (463)
T ss_pred eEEeccCCcchhhcc-cccchhhhhhccCccccceeeeeccCceEEEEecccc---------eeeeheecc-CCceeeee
Confidence 555554444444433 37888999999999876 6888999999999999986 444556666 88999999
Q ss_pred ccCC-CEEEEEcCCCcEEEEeCCCCeE-EEEeCC-CCCCCCeeEEE------EeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 384 CAGF-SVAVSSSEDGTCLLWDINTIGY-IREIPC-VDPNTPVSHVT------MSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 384 s~~~-~~l~sgs~Dg~I~iwdl~~~~~-v~~l~~-~h~~~~V~~l~------~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
+-+. ..|..|...|.|.|+|++..+- +..+.. .. ..+|..++ ..+.++.++... -.+..|.+.
T Consensus 244 Dlde~h~IYaGl~nG~VlvyD~R~~~~~~~e~~a~~t-~~pv~~i~~~~~n~~f~~gglLv~~l-------t~l~f~ei~ 315 (463)
T KOG1645|consen 244 DLDERHVIYAGLQNGMVLVYDMRQPEGPLMELVANVT-INPVHKIAPVQPNKIFTSGGLLVFAL-------TVLQFYEIV 315 (463)
T ss_pred ccCCcceeEEeccCceEEEEEccCCCchHhhhhhhhc-cCcceeecccCccccccccceEEeee-------hhhhhhhhh
Confidence 9865 4788899999999999986432 111111 00 12333333 333455555443 235566664
Q ss_pred ---Cc--EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCe---EE----EEeCCCCeEEEEecCCC-CCCe-----E
Q psy10778 455 ---AQ--LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGT---IQ----LWSGYKLAHLLTLNTNV-ALPV-----I 516 (556)
Q Consensus 455 ---g~--~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~---I~----iwd~~~~~~~~~~~~~h-~~~V-----~ 516 (556)
+. ++..+...+.+.++++. +.. ..+|++.-.+-. ++ --|..+|..+.....++ .+.- +
T Consensus 316 ~s~~~~p~vlele~pG~cismqy~--~~s--nh~l~tyRs~pn~p~~r~il~~~d~~dG~pVc~~r~~~~Gs~~~kl~t~ 391 (463)
T KOG1645|consen 316 FSAECLPCVLELEPPGICISMQYH--GVS--NHLLLTYRSNPNFPQSRFILGRIDFRDGFPVCGKRRTYFGSKQTKLSTT 391 (463)
T ss_pred ccccCCCcccccCCCcceeeeeec--Ccc--ceEEEEecCCCCCccceeeeeeeccccCceeeeecccccCCcccccccc
Confidence 22 22333345556666665 322 145555443211 11 11223444444333222 1110 1
Q ss_pred -EEEEecCCCEEE-EEcCCCcEEEEEcCCCCCcCeee
Q psy10778 517 -AVTYSCDSQHLY-ASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 517 -~l~~s~dg~~l~-sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+.=.++..+++ +|++.+.+.+||..+.+.+.++.
T Consensus 392 ~ai~~~~~nn~iv~~gd~tn~lil~D~~s~evvQ~l~ 428 (463)
T KOG1645|consen 392 QAIRAVEDNNYIVVVGDSTNELILQDPHSFEVVQTLA 428 (463)
T ss_pred cceeccccccEEEEecCCcceeEEeccchhheeeecc
Confidence 111123444444 56667899999999977765543
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.0019 Score=67.88 Aligned_cols=186 Identities=17% Similarity=0.111 Sum_probs=112.2
Q ss_pred CCceEEEEEcCCCCEEEEEe---CC-CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEE-EEcCCCc
Q psy10778 324 GATIATATTAPDCHTLWLGL---TS-GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGT 398 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs---~D-g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~ 398 (556)
...+..-+|++++..++..+ .. ..+.++++..+.. ..+... .+.-..-+|+|||+.|+ +...||.
T Consensus 192 ~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~-------~~i~~~---~g~~~~P~fspDG~~l~f~~~rdg~ 261 (425)
T COG0823 192 GSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKR-------PVILNF---NGNNGAPAFSPDGSKLAFSSSRDGS 261 (425)
T ss_pred CcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcc-------ceeecc---CCccCCccCCCCCCEEEEEECCCCC
Confidence 44566778999988766542 22 3588888877621 111222 33334578999998655 5566776
Q ss_pred EE--EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-CCCeEEEEEeeC
Q psy10778 399 CL--LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTFSNA 475 (556)
Q Consensus 399 I~--iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-~~~i~~i~~s~~ 475 (556)
.. +.|+..++ ...+.. . .+.-..-.|+|||+.|+..++.. ....|.+++.+|.....+.. ...-..-.|+
T Consensus 262 ~~iy~~dl~~~~-~~~Lt~-~-~gi~~~Ps~spdG~~ivf~Sdr~--G~p~I~~~~~~g~~~~riT~~~~~~~~p~~S-- 334 (425)
T COG0823 262 PDIYLMDLDGKN-LPRLTN-G-FGINTSPSWSPDGSKIVFTSDRG--GRPQIYLYDLEGSQVTRLTFSGGGNSNPVWS-- 334 (425)
T ss_pred ccEEEEcCCCCc-ceeccc-C-CccccCccCCCCCCEEEEEeCCC--CCcceEEECCCCCceeEeeccCCCCcCccCC--
Confidence 55 45777665 333544 2 34445778999999999987532 22356677777665555532 2222267788
Q ss_pred CCCCcceEEEEEeC-CCe--EEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 476 PEGVSQNVIVTGHS-DGT--IQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 476 pdg~~~~~l~tg~~-dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
|+| ++|+..+. +|. |.+.|+.++...+.+. .......-.|.++++.++..+
T Consensus 335 pdG---~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt--~~~~~e~ps~~~ng~~i~~~s 388 (425)
T COG0823 335 PDG---DKIVFESSSGGQWDIDKNDLASGGKIRILT--STYLNESPSWAPNGRMIMFSS 388 (425)
T ss_pred CCC---CEEEEEeccCCceeeEEeccCCCCcEEEcc--ccccCCCCCcCCCCceEEEec
Confidence 899 66665553 454 6667776665455554 233344556777776655443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.0045 Score=61.89 Aligned_cols=234 Identities=14% Similarity=0.134 Sum_probs=130.2
Q ss_pred EEeccCCCeEEEEeCCCCCCcceEcCCCC--C----ceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccccccCC
Q psy10778 296 ICWNECDNLIRLKMSKELPATPVIRPPLG--A----TIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~--~----~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+..|-.+-.|.+||.++......+..... . ....++++.||+++++.. -...|.|-|+... +.
T Consensus 60 ~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~---------kv 130 (342)
T PF06433_consen 60 GTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVVPYKNMFALSADGKFLYVQNFTPATSVTVVDLAAK---------KV 130 (342)
T ss_dssp TTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS--GGGEEE-TTSSEEEEEEESSSEEEEEEETTTT---------EE
T ss_pred cccccceeEEEEEecCcCcccceEecCCcchheecccccceEEccCCcEEEEEccCCCCeEEEEECCCC---------ce
Confidence 33566677899999998755554433221 1 112345667777666653 2245666666543 11
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC-CCeEEEEe---CCCCCCCC-eeEEEEeCCCCeEEEEeecCc
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN-TIGYIREI---PCVDPNTP-VSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~-~~~~v~~l---~~~h~~~~-V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+..+. ...+..+--+ ..+-+.+.+.||++.-..+. .|+..++. ..+. ..+ ...-++...+..++-.+
T Consensus 131 v~ei~--~PGC~~iyP~-~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~-~dp~f~~~~~~~~~~~~~F~S---- 202 (342)
T PF06433_consen 131 VGEID--TPGCWLIYPS-GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPD-DDPLFEHPAYSRDGGRLYFVS---- 202 (342)
T ss_dssp EEEEE--GTSEEEEEEE-ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTT-TS-B-S--EEETTTTEEEEEB----
T ss_pred eeeec--CCCEEEEEec-CCCceEEEecCCceEEEEECCCCCEeEeeccccCCC-CcccccccceECCCCeEEEEe----
Confidence 12221 1111122112 22457788889998888877 45444322 1101 222 23445566666666666
Q ss_pred CCCCeEEEEEeCCcEEE---Eeec-----------CCCeEEEEEeeCCCCCcceEEEEEe--CCC-------eEEEEeCC
Q psy10778 443 TGGSILRLHTINAQLIT---SLAS-----------ELRITSVTFSNAPEGVSQNVIVTGH--SDG-------TIQLWSGY 499 (556)
Q Consensus 443 ~~d~~I~iwdi~g~~i~---~~~~-----------~~~i~~i~~s~~pdg~~~~~l~tg~--~dg-------~I~iwd~~ 499 (556)
..|.|+-.|+.+.... .... .+.-.-+++++ +.+ ++.+.-. .+| .|-++|+.
T Consensus 203 -y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~-~~~---rlyvLMh~g~~gsHKdpgteVWv~D~~ 277 (342)
T PF06433_consen 203 -YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHA-ASG---RLYVLMHQGGEGSHKDPGTEVWVYDLK 277 (342)
T ss_dssp -TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEET-TTT---EEEEEEEE--TT-TTS-EEEEEEEETT
T ss_pred -cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeecc-ccC---eEEEEecCCCCCCccCCceEEEEEECC
Confidence 7899999999754322 2211 12334567762 233 3333322 111 47888999
Q ss_pred CCeEEEEecCCCCCCeEEEEEecCCC-EEEEE-cCCCcEEEEEcCCCCCcCeeecc
Q psy10778 500 KLAHLLTLNTNVALPVIAVTYSCDSQ-HLYAS-NTEGLVIIWESSSHNRTPKFLNL 553 (556)
Q Consensus 500 ~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sg-s~Dg~V~vwdl~~~~~~~~~~~~ 553 (556)
+++.+.++.. ..++.+|..+.+.+ +|++. ..++.+.+||..+++.+.+++.+
T Consensus 278 t~krv~Ri~l--~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 278 THKRVARIPL--EHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp TTEEEEEEEE--EEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred CCeEEEEEeC--CCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 9999999984 45688999999875 66554 45799999999999888877654
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=97.63 E-value=0.0076 Score=63.66 Aligned_cols=201 Identities=16% Similarity=0.108 Sum_probs=110.6
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..||...++.....+ .. ..+.-...+|.+. ..+|+-..+++|.|+.--.. +....+.-. ..+.
T Consensus 50 ~g~geY~iyt~~~~r--~k----~~G~g~~~vw~~~-n~yAv~~~~~~I~I~kn~~~---------~~~k~i~~~-~~~~ 112 (443)
T PF04053_consen 50 CGDGEYEIYTALAWR--NK----AFGSGLSFVWSSR-NRYAVLESSSTIKIYKNFKN---------EVVKSIKLP-FSVE 112 (443)
T ss_dssp EETTEEEEEETTTTE--EE----EEEE-SEEEE-TS-SEEEEE-TTS-EEEEETTEE----------TT-----S-S-EE
T ss_pred EcCCEEEEEEccCCc--cc----ccCceeEEEEecC-ccEEEEECCCeEEEEEcCcc---------ccceEEcCC-cccc
Confidence 567777777733221 11 1234456789885 45777777889999743222 111122211 1233
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc---
Q psy10778 380 DLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ--- 456 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~--- 456 (556)
.|.- |.+|...+.+ .|.+||+.+++.++.+.. .+|..+.|++++.+++..+ +..+.+++.+.+
T Consensus 113 ~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v----~~vk~V~Ws~~g~~val~t------~~~i~il~~~~~~~~ 178 (443)
T PF04053_consen 113 KIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDV----SAVKYVIWSDDGELVALVT------KDSIYILKYNLEAVA 178 (443)
T ss_dssp EEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-----E-EEEEE-TTSSEEEEE-------S-SEEEEEE-HHHHH
T ss_pred eEEc---CcEEEEECCC-CEEEEEhhHcceeeEEec----CCCcEEEEECCCCEEEEEe------CCeEEEEEecchhcc
Confidence 3322 7777666544 899999999999999986 3499999999999999886 567888877644
Q ss_pred ---------EEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE
Q psy10778 457 ---------LITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526 (556)
Q Consensus 457 ---------~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 526 (556)
.+..... ...|.+.+|. .+ -++.|.. . .++.+--.....++.+ ..++.=+...++...
T Consensus 179 ~~~~~g~e~~f~~~~E~~~~IkSg~W~--~d----~fiYtT~-~-~lkYl~~Ge~~~i~~l----d~~~yllgy~~~~~~ 246 (443)
T PF04053_consen 179 AIPEEGVEDAFELIHEISERIKSGCWV--ED----CFIYTTS-N-HLKYLVNGETGIIAHL----DKPLYLLGYLPKENR 246 (443)
T ss_dssp HBTTTB-GGGEEEEEEE-S--SEEEEE--TT----EEEEE-T-T-EEEEEETTEEEEEEE-----SS--EEEEEETTTTE
T ss_pred cccccCchhceEEEEEecceeEEEEEE--cC----EEEEEcC-C-eEEEEEcCCcceEEEc----CCceEEEEEEccCCE
Confidence 4444433 7899999998 33 2444443 3 6766332222233444 367888888888889
Q ss_pred EEEEcCCCcEEEEEcCC
Q psy10778 527 LYASNTEGLVIIWESSS 543 (556)
Q Consensus 527 l~sgs~Dg~V~vwdl~~ 543 (556)
++....|+.|..+.+.-
T Consensus 247 ly~~Dr~~~v~~~~ld~ 263 (443)
T PF04053_consen 247 LYLIDRDGNVISYELDL 263 (443)
T ss_dssp EEEE-TT--EEEEE--H
T ss_pred EEEEECCCCEEEEEECH
Confidence 99999999999988754
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.027 Score=58.70 Aligned_cols=199 Identities=13% Similarity=0.131 Sum_probs=138.5
Q ss_pred eEEEEEcCCCCE-EEEEeCCCcEEEEEeeeccCcccccccCCCeEe-eCCCccEEEEEEccCCCEEEEEcC---CCcEEE
Q psy10778 327 IATATTAPDCHT-LWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSE---DGTCLL 401 (556)
Q Consensus 327 V~~i~~s~dg~~-l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~i 401 (556)
-..++.++.+.. .++...++.|.+.|.... +..... .+. .-..++++++++.+..+.. ++++.+
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~---------~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsv 144 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATN---------TVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSV 144 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCccc---------ceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEE
Confidence 346777888774 455555689999996544 122222 122 5567999999976665544 789999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE------eecCCCeEEEEEeeC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS------LASELRITSVTFSNA 475 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~------~~~~~~i~~i~~s~~ 475 (556)
.|-.+++.+.+... - ..+ ..++++|+|..+..+.. .++.|.+.|.++..+.. .........+.++
T Consensus 145 id~~t~~~~~~~~v-G-~~P-~~~a~~p~g~~vyv~~~----~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~-- 215 (381)
T COG3391 145 IDAATNKVTATIPV-G-NTP-TGVAVDPDGNKVYVTNS----DDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVD-- 215 (381)
T ss_pred EeCCCCeEEEEEec-C-CCc-ceEEECCCCCeEEEEec----CCCeEEEEeCCCcceeccccccccccCCCCceEEEC--
Confidence 99999988888655 2 344 89999999997776653 68999999988655553 2334455778888
Q ss_pred CCCCcceEEEEE-eCC--CeEEEEeCCCCeEEEE-ecCCCCCCeEEEEEecCCCEEEEEcCC-CcEEEEEcCCCCCcCe
Q psy10778 476 PEGVSQNVIVTG-HSD--GTIQLWSGYKLAHLLT-LNTNVALPVIAVTYSCDSQHLYASNTE-GLVIIWESSSHNRTPK 549 (556)
Q Consensus 476 pdg~~~~~l~tg-~~d--g~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~sgs~D-g~V~vwdl~~~~~~~~ 549 (556)
++| ..+.+. ..+ +.+...|..++..... ...+.. ....+..+|+|+.+++.... +.+.+-|..+......
T Consensus 216 ~~g---~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 216 PDG---NRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred CCC---CEEEEEeccCCCceEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeee
Confidence 888 544433 333 6999999988887766 331222 56788999999999988544 8899998887554443
|
|
| >KOG1008|consensus | Back alignment and domain information |
|---|
Probab=97.50 E-value=3.5e-05 Score=80.64 Aligned_cols=200 Identities=13% Similarity=0.139 Sum_probs=128.8
Q ss_pred CceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEEEc----CCC
Q psy10778 325 ATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVSSS----EDG 397 (556)
Q Consensus 325 ~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs----~Dg 397 (556)
..+.|++++-+ ...+++|..+|.|-+-........ ......+|....++++|++ |...||.|- .|.
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds 129 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDS 129 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------cceecccccccccccccccccHHHHHhhhhhhcccC
Confidence 45667776643 457899999999998877654211 1245678889999999998 445677663 367
Q ss_pred cEEEEeCCCCe--EEE--EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-CCCeEEEEE
Q psy10778 398 TCLLWDINTIG--YIR--EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-ELRITSVTF 472 (556)
Q Consensus 398 ~I~iwdl~~~~--~v~--~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-~~~i~~i~~ 472 (556)
.+.|||+.++- +.. .+...- .....+++|..+.+.+.+|. ....++++|++......... ...+..+..
T Consensus 130 ~~~Iwdi~s~ltvPke~~~fs~~~-l~gqns~cwlrd~klvlaGm-----~sr~~~ifdlRqs~~~~~svnTk~vqG~tV 203 (783)
T KOG1008|consen 130 SLKIWDINSLLTVPKESPLFSSST-LDGQNSVCWLRDTKLVLAGM-----TSRSVHIFDLRQSLDSVSSVNTKYVQGITV 203 (783)
T ss_pred CccceecccccCCCcccccccccc-ccCccccccccCcchhhccc-----ccchhhhhhhhhhhhhhhhhhhhhccccee
Confidence 89999998761 111 111101 23456888888888888887 67799999998443332221 235566667
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEe-CCCC-eEEEEecCCCC----CCeEEEEEecCC-CEEEEEcC-CCcEEEEEcCC
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWS-GYKL-AHLLTLNTNVA----LPVIAVTYSCDS-QHLYASNT-EGLVIIWESSS 543 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd-~~~~-~~~~~~~~~h~----~~V~~l~~s~dg-~~l~sgs~-Dg~V~vwdl~~ 543 (556)
.|. .+ +++++-. ||.|.+|| .+.. +++..+. ..+ ..+..++|.|.. ..+++.+. .+.|+.+++..
T Consensus 204 dp~-~~---nY~cs~~-dg~iAiwD~~rnienpl~~i~-~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 204 DPF-SP---NYFCSNS-DGDIAIWDTYRNIENPLQIIL-RNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred cCC-CC---Cceeccc-cCceeeccchhhhccHHHHHh-hCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 732 33 4666555 99999999 3332 2333333 122 348999999954 34444444 47889998755
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.48 E-value=0.069 Score=56.21 Aligned_cols=202 Identities=13% Similarity=0.081 Sum_probs=105.2
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEE
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYL 383 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~ 383 (556)
.|++|+.... .+..+...+ +.|.++.|+.+ ..|++-..||++++||+.... .......+....-....+....+
T Consensus 62 ~I~iys~sG~-ll~~i~w~~-~~iv~~~wt~~-e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~~~~~ 135 (410)
T PF04841_consen 62 SIQIYSSSGK-LLSSIPWDS-GRIVGMGWTDD-EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIFAIWF 135 (410)
T ss_pred EEEEECCCCC-EeEEEEECC-CCEEEEEECCC-CeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccccccccc
Confidence 5888887644 344444444 78999999886 566677789999999986431 00000111111112222333333
Q ss_pred ccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCC-------CCCCeeE-EEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 384 CAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVD-------PNTPVSH-VTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 384 s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h-------~~~~V~~-l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|-.+. ..++.+.+-.-.... ..+.+.... ....... ..++.+....+... .++.+.+.+-+
T Consensus 136 ~~~GivvL--t~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~-----~g~~i~~i~~~ 208 (410)
T PF04841_consen 136 YKNGIVVL--TGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLA-----NGETIYIIDEN 208 (410)
T ss_pred CCCCEEEE--CCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEe-----cCCEEEEEEcc
Confidence 33442223 234444443222211 111111100 0000000 12333333333333 34444433332
Q ss_pred CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 455 AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
.- ..+...+++..|+.| |+| +++|.-..+|.+.+.+..-.+.+..+..........+.|.-+..
T Consensus 209 ~~--~~i~~~~~i~~iavS--png---~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~da 272 (410)
T PF04841_consen 209 SF--KQIDSDGPIIKIAVS--PNG---KFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGNDA 272 (410)
T ss_pred cc--ccccCCCCeEEEEEC--CCC---CEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCCc
Confidence 10 112234689999999 999 89999999999999887666666666644345667788876543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=97.47 E-value=0.012 Score=49.03 Aligned_cols=105 Identities=19% Similarity=0.251 Sum_probs=77.4
Q ss_pred EEEEEEcc---CC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 378 VTDLYLCA---GF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 378 V~~l~~s~---~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|++++++. +| +.|+.||+|..|++|+-. +.+..+.. ...|++++-... ..++.+. .+|+|-+|+-
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e---~~~v~~L~~~~~-~~F~Y~l-----~NGTVGvY~~ 70 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITE---TDKVTSLCSLGG-GRFAYAL-----ANGTVGVYDR 70 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEec---ccceEEEEEcCC-CEEEEEe-----cCCEEEEEeC
Confidence 56666654 33 489999999999999754 67777776 678888887776 6677777 8999999977
Q ss_pred CCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 454 NAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 454 ~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
..+ +...+....++++++.. .++.+..-|++|-++|.|-+
T Consensus 71 ~~R-lWRiKSK~~~~~~~~~D-~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 71 SQR-LWRIKSKNQVTSMAFYD-INGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cce-eeeeccCCCeEEEEEEc-CCCCCceEEEEEecCCeEEe
Confidence 433 34445566688887763 34444578999999998854
|
|
| >KOG3617|consensus | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.00034 Score=75.40 Aligned_cols=115 Identities=15% Similarity=0.206 Sum_probs=93.4
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL 501 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~ 501 (556)
-+-..|+|....+++++-+.. ..|.|.||--.|++-....-+-.++++||+ |+. -+|+.|-.-|.+.+|...+.
T Consensus 18 sti~SWHPsePlfAVA~fS~e-r~GSVtIfadtGEPqr~Vt~P~hatSLCWH--pe~---~vLa~gwe~g~~~v~~~~~~ 91 (1416)
T KOG3617|consen 18 STISSWHPSEPLFAVASFSPE-RGGSVTIFADTGEPQRDVTYPVHATSLCWH--PEE---FVLAQGWEMGVSDVQKTNTT 91 (1416)
T ss_pred ccccccCCCCceeEEEEecCC-CCceEEEEecCCCCCcccccceehhhhccC--hHH---HHHhhccccceeEEEecCCc
Confidence 345678888888887764332 678999998778876666666678889999 776 68899999999999997655
Q ss_pred eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 502 AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+. .++...|..+|..+.||++|..++++..-|.|.+|...-
T Consensus 92 e~-htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 92 ET-HTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred ee-eeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeee
Confidence 54 444447999999999999999999999999999999874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.087 Score=51.16 Aligned_cols=194 Identities=10% Similarity=0.072 Sum_probs=111.3
Q ss_pred CCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-CCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 324 GATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLG-HSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
...+..++|.|+.+.| ++....+.|..++.+ + +.++.+.- -.+..-+|++..++.++++.-.++.+.+
T Consensus 21 ~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G---------~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~ 90 (248)
T PF06977_consen 21 LDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-G---------KVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYI 90 (248)
T ss_dssp -S-EEEEEEETTTTEEEEEETTTTEEEEEETT------------EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEE
T ss_pred cCCccccEEcCCCCeEEEEECCCCEEEEEcCC-C---------CEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEE
Confidence 3459999999986654 555566666555543 2 22233322 1356778888888877777767899999
Q ss_pred EeCCCC------eEEEEeC--C--CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC----cEEEEe---e--
Q psy10778 402 WDINTI------GYIREIP--C--VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA----QLITSL---A-- 462 (556)
Q Consensus 402 wdl~~~------~~v~~l~--~--~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g----~~i~~~---~-- 462 (556)
.++... .....+. . .+ +..+-.++|++.++.++++. +.....+|.+++ ..+... .
T Consensus 91 ~~~~~~~~~~~~~~~~~~~l~~~~~~-N~G~EGla~D~~~~~L~v~k-----E~~P~~l~~~~~~~~~~~~~~~~~~~~~ 164 (248)
T PF06977_consen 91 FTIDDDTTSLDRADVQKISLGFPNKG-NKGFEGLAYDPKTNRLFVAK-----ERKPKRLYEVNGFPGGFDLFVSDDQDLD 164 (248)
T ss_dssp EEE----TT--EEEEEEEE---S----SS--EEEEEETTTTEEEEEE-----ESSSEEEEEEESTT-SS--EEEE-HHHH
T ss_pred EEEeccccccchhhceEEecccccCC-CcceEEEEEcCCCCEEEEEe-----CCCChhhEEEccccCccceeeccccccc
Confidence 988332 1122222 1 02 46689999999988888876 555666776653 111111 1
Q ss_pred ----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC--------CCCeEEEEEecCCCEEEEE
Q psy10778 463 ----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--------ALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 463 ----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h--------~~~V~~l~~s~dg~~l~sg 530 (556)
.-..+.++++.+ ..+ ++++....+..|..+| .+|+.+..+.... -...-.|+|.++|++.+ .
T Consensus 165 ~~~~~~~d~S~l~~~p-~t~---~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYI-v 238 (248)
T PF06977_consen 165 DDKLFVRDLSGLSYDP-RTG---HLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYI-V 238 (248)
T ss_dssp -HT--SS---EEEEET-TTT---EEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEE-E
T ss_pred cccceeccccceEEcC-CCC---eEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEE-E
Confidence 134678889984 345 7888999999999999 6888777665311 13478999999986554 5
Q ss_pred cCCCcEEEE
Q psy10778 531 NTEGLVIIW 539 (556)
Q Consensus 531 s~Dg~V~vw 539 (556)
++-+..+++
T Consensus 239 sEpNlfy~f 247 (248)
T PF06977_consen 239 SEPNLFYRF 247 (248)
T ss_dssp ETTTEEEEE
T ss_pred cCCceEEEe
Confidence 566665554
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.044 Score=59.23 Aligned_cols=153 Identities=13% Similarity=0.090 Sum_probs=108.9
Q ss_pred EEccCCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc------------------
Q psy10778 382 YLCAGFSVAVSSS-EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK------------------ 442 (556)
Q Consensus 382 ~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~------------------ 442 (556)
-++++|+.+...+ ..+.+.+.|..+.+...++.- ......++++++|+++++.+.+..
T Consensus 199 PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~V---dgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vv 275 (635)
T PRK02888 199 PLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMV---DGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVV 275 (635)
T ss_pred ccCCCCCEeecccceeEEEEEEECccceEEEEEEe---CCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEE
Confidence 3456776554333 357788889998888887776 456678899999999988863220
Q ss_pred ------------C-----CCCeEEEEEeCC------cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC
Q psy10778 443 ------------T-----GGSILRLHTINA------QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 443 ------------~-----~d~~I~iwdi~g------~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~ 499 (556)
+ .++.|.+.|... +.+..+........+.++ |||. .+++++..+.+|.|.|+.
T Consensus 276 fni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vS--PDGk--ylyVanklS~tVSVIDv~ 351 (635)
T PRK02888 276 FNIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTS--PDGK--YFIANGKLSPTVTVIDVR 351 (635)
T ss_pred EchHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEEC--CCCC--EEEEeCCCCCcEEEEECh
Confidence 0 124577777653 355556677788899999 9993 344555578999999997
Q ss_pred CCe------------EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 500 KLA------------HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 500 ~~~------------~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+.+ .+.++.. .......+|+++|....+.--|..|..|++.+
T Consensus 352 k~k~~~~~~~~~~~~vvaevev--GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 352 KLDDLFDGKIKPRDAVVAEPEL--GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred hhhhhhhccCCccceEEEeecc--CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 755 3455542 34455778999998888888999999999876
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.068 Score=57.74 Aligned_cols=242 Identities=10% Similarity=0.105 Sum_probs=132.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC----ceE-EEEEcCCCCEEEEEe---------CCCcEEEEEeeeccCcc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA----TIA-TATTAPDCHTLWLGL---------TSGNILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~----~V~-~i~~s~dg~~l~tgs---------~Dg~I~vwd~~~~~~~~ 360 (556)
.+..++.||.|+-+|.++++.+-........ .+. ...+. +..++.++ .+|.+..+|..++...-
T Consensus 112 ~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W 189 (488)
T cd00216 112 KVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLW 189 (488)
T ss_pred eEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceee
Confidence 6667788999999999998876655432110 011 11111 24455554 35677777776652110
Q ss_pred ccccc-CCCeEe---------eCCCc-cE-EEEEEccCCCEEEEEcCCC------------------cEEEEeCCCCeEE
Q psy10778 361 KIEFC-KPPTIL---------LGHSA-CV-TDLYLCAGFSVAVSSSEDG------------------TCLLWDINTIGYI 410 (556)
Q Consensus 361 ~~~~~-~~~~~l---------~~h~~-~V-~~l~~s~~~~~l~sgs~Dg------------------~I~iwdl~~~~~v 410 (556)
+.... .....+ ..+.+ .| ...++.+.+.+++.++.++ .+.-.|+.+|+.+
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~ 269 (488)
T cd00216 190 RFYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVK 269 (488)
T ss_pred EeeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEE
Confidence 00000 000000 00111 11 1234455566777777665 7999999999988
Q ss_pred EEeCCCCCCC----CeeEEEEe----CCCC---eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCC
Q psy10778 411 REIPCVDPNT----PVSHVTMS----ETNG---EIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEG 478 (556)
Q Consensus 411 ~~l~~~h~~~----~V~~l~~s----p~~~---~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg 478 (556)
-.....+... ......+. -++. .+++++ .+|.+...|.+ |+.+-..... ...++.+ + +
T Consensus 270 W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~-----~~G~l~ald~~tG~~~W~~~~~--~~~~~~~--~-~ 339 (488)
T cd00216 270 WFYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAP-----KNGFFYVLDRTTGKLISARPEV--EQPMAYD--P-G 339 (488)
T ss_pred EEeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEEC-----CCceEEEEECCCCcEeeEeEee--ccccccC--C-c
Confidence 7764301010 00111111 1232 455666 78999999986 8887765432 1112233 2 2
Q ss_pred CcceEEEE-----------------EeCCCeEEEEeCCCCeEEEEecCC-CC------CCeEEEEEecCCCEEEEEcCCC
Q psy10778 479 VSQNVIVT-----------------GHSDGTIQLWSGYKLAHLLTLNTN-VA------LPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 479 ~~~~~l~t-----------------g~~dg~I~iwd~~~~~~~~~~~~~-h~------~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
.+++. ...+|.|.-.|+.+++.+.+...+ +. .+...-...-.+..|++++.||
T Consensus 340 ---~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG 416 (488)
T cd00216 340 ---LVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADG 416 (488)
T ss_pred ---eEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEecCCeEEEECCCC
Confidence 22221 124678888999999988877632 00 1111111122467888999999
Q ss_pred cEEEEEcCCCCCcCeee
Q psy10778 535 LVIIWESSSHNRTPKFL 551 (556)
Q Consensus 535 ~V~vwdl~~~~~~~~~~ 551 (556)
.|+.+|.++++.+-+++
T Consensus 417 ~l~ald~~tG~~lW~~~ 433 (488)
T cd00216 417 YFRAFDATTGKELWKFR 433 (488)
T ss_pred eEEEEECCCCceeeEEE
Confidence 99999999988766543
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.00093 Score=70.35 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=77.6
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE-EEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT-DLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~-~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
..|.-+.|+|.-..+|++..+|.|.+.++.. ..+.++.-|...++ +++|.|||+.|+.|-+||+|++.|
T Consensus 21 ~~i~~~ewnP~~dLiA~~t~~gelli~R~n~----------qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~D 90 (665)
T KOG4640|consen 21 INIKRIEWNPKMDLIATRTEKGELLIHRLNW----------QRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHD 90 (665)
T ss_pred cceEEEEEcCccchhheeccCCcEEEEEecc----------ceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEE
Confidence 3577899999999999999999999988873 34566666777777 999999999999999999999999
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeC
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp 429 (556)
+.++..+....... ..+|.++.|++
T Consensus 91 ve~~~~l~~~~~s~-e~~is~~~w~~ 115 (665)
T KOG4640|consen 91 VEKGGRLVSFLFSV-ETDISKGIWDR 115 (665)
T ss_pred ccCCCceecccccc-ccchheeeccc
Confidence 99998887732212 67888888874
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.076 Score=51.56 Aligned_cols=188 Identities=9% Similarity=0.009 Sum_probs=105.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe--Eee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT--ILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~--~l~ 372 (556)
+++.....+.|.-.+.+ ++.+..+...-.+..-.+++..++.++++--.++.+.++++............+... .-.
T Consensus 36 LfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~ 114 (248)
T PF06977_consen 36 LFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPN 114 (248)
T ss_dssp EEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S-
T ss_pred EEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEeccccc
Confidence 66666677777777764 566666655545667889998887766665568999999885432111111000001 111
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC---CeEEEE-----e---CCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT---IGYIRE-----I---PCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~---~~~v~~-----l---~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
.+...+-.++|++.++.++.+-+.....++.+.. ...+.. + .. . ...+.+++++|..+.+...+.
T Consensus 115 ~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~d~S~l~~~p~t~~lliLS~-- 190 (248)
T PF06977_consen 115 KGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL-F-VRDLSGLSYDPRTGHLLILSD-- 190 (248)
T ss_dssp --SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT----SS---EEEEETTTTEEEEEET--
T ss_pred CCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc-e-eccccceEEcCCCCeEEEEEC--
Confidence 3455689999999888888877777777776653 111111 1 11 2 356889999999888877775
Q ss_pred cCCCCeEEEEEeCCcEEEEeecC----------CCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 442 KTGGSILRLHTINAQLITSLASE----------LRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 442 ~~~d~~I~iwdi~g~~i~~~~~~----------~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
.+..|..+|..|+++..+... .+.-.|++. ++| ++.+++ +-+..++
T Consensus 191 --es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d--~~G---~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 191 --ESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGIAFD--PDG---NLYIVS-EPNLFYR 246 (248)
T ss_dssp --TTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEEEE---TT-----EEEEE-TTTEEEE
T ss_pred --CCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEEEEC--CCC---CEEEEc-CCceEEE
Confidence 788999999889988877533 257889999 787 444443 4444444
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0064 Score=67.76 Aligned_cols=145 Identities=11% Similarity=0.055 Sum_probs=100.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC-----CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP-----DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~-----dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+|......+.|+-.|++.|+++..+......+|..++-.. +....+.|-.+..+..||.+..+ .+... .. .
T Consensus 496 il~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~--~k~v~-~~-~ 571 (794)
T PF08553_consen 496 ILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSG--NKLVD-SQ-S 571 (794)
T ss_pred EeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCC--Cceee-cc-c
Confidence 3444456688999999999999998865555577665432 13456778888999999988642 11110 01 1
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.........+|++-+.+| .||.||.+|.|++||-. |+.-. .+++ - ..+|..|.++.||++|++.| +..|
T Consensus 572 k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~-l-G~pI~~iDvt~DGkwilaTc------~tyL 641 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPG-L-GDPIIGIDVTADGKWILATC------KTYL 641 (794)
T ss_pred cccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCC-C-CCCeeEEEecCCCcEEEEee------cceE
Confidence 112344567788777666 69999999999999943 43322 3444 4 68999999999999999887 6678
Q ss_pred EEEEe
Q psy10778 449 RLHTI 453 (556)
Q Consensus 449 ~iwdi 453 (556)
.+++.
T Consensus 642 lLi~t 646 (794)
T PF08553_consen 642 LLIDT 646 (794)
T ss_pred EEEEE
Confidence 88875
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.12 Score=53.88 Aligned_cols=208 Identities=13% Similarity=0.080 Sum_probs=138.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT---SGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~---Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
..+....++.|.+.|..+.+.......+. ....++++++++.+.++.. ++++.+.|..++ +.....
T Consensus 88 vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~---------~~~~~~ 156 (381)
T COG3391 88 VYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATN---------KVTATI 156 (381)
T ss_pred EEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCC---------eEEEEE
Confidence 56666668999999977776666665454 5568899999988887765 577777776655 233333
Q ss_pred eCCCccEEEEEEccCCCEEEEE-cCCCcEEEEeCCCCeEEE-----EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSS-SEDGTCLLWDINTIGYIR-----EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sg-s~Dg~I~iwdl~~~~~v~-----~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
..-..+ ..++++|+|..++.. ..++.+.+.|.......+ .... ......+++++++..+.+..... .+
T Consensus 157 ~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~---~~~P~~i~v~~~g~~~yV~~~~~--~~ 230 (381)
T COG3391 157 PVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGV---GTGPAGIAVDPDGNRVYVANDGS--GS 230 (381)
T ss_pred ecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceecccccccccc---CCCCceEEECCCCCEEEEEeccC--CC
Confidence 333344 889999999955544 578999999987655553 1222 34457889999999777765210 12
Q ss_pred CeEEEEEeC-CcEEEE-eecCC-CeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEEecCC--CCCCeEEEE
Q psy10778 446 SILRLHTIN-AQLITS-LASEL-RITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTN--VALPVIAVT 519 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~-~~~~~-~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~--h~~~V~~l~ 519 (556)
+.+...|.. +..... ..... ....+..+ |+| ..+.+.. ..+.+.+-|..+......+..+ -...+..++
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~--p~g---~~~yv~~~~~~~V~vid~~~~~v~~~~~~~~~~~~~~~~~~ 305 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVD--PAG---KAAYVANSQGGTVSVIDGATDRVVKTGPTGNEALGEPVSIA 305 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeEC--CCC---CEEEEEecCCCeEEEEeCCCCceeeeecccccccccceecc
Confidence 588888887 444433 22222 56677888 888 6666664 4588999998888877766531 123356666
Q ss_pred EecCC
Q psy10778 520 YSCDS 524 (556)
Q Consensus 520 ~s~dg 524 (556)
+.+..
T Consensus 306 ~~~~~ 310 (381)
T COG3391 306 ISPLY 310 (381)
T ss_pred ceeec
Confidence 66543
|
|
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.088 Score=56.89 Aligned_cols=201 Identities=8% Similarity=0.030 Sum_probs=112.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCC-----CceE--EEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLG-----ATIA--TATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~-----~~V~--~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.+..++.++.|.-.|..+++.+-....... ..+. .++.. ++..++.++.+|.|.-+|..++. .
T Consensus 63 ~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~---------~ 132 (488)
T cd00216 63 DMYFTTSHSALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGK---------Q 132 (488)
T ss_pred EEEEeCCCCcEEEEECCCChhhceeCCCCCccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCC---------E
Confidence 445566788999899888876655543221 0110 11111 22678888889999999988762 1
Q ss_pred CeEeeCCCc-----cEE-EEEEccCCCEEEEEc---------CCCcEEEEeCCCCeEEEEeCCCCCCC------------
Q psy10778 368 PTILLGHSA-----CVT-DLYLCAGFSVAVSSS---------EDGTCLLWDINTIGYIREIPCVDPNT------------ 420 (556)
Q Consensus 368 ~~~l~~h~~-----~V~-~l~~s~~~~~l~sgs---------~Dg~I~iwdl~~~~~v~~l~~~h~~~------------ 420 (556)
+-....... .+. ...+. +.+++.++ .+|.+...|..+|+.+-.... ....
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~--~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~-~~~~~~~~~~~~~~~~ 209 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIV--KKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYT-TEPDPNAFPTWGPDRQ 209 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEE--CCEEEEeccccccccCCCCcEEEEEECCCCceeeEeec-cCCCcCCCCCCCCCcc
Confidence 111111110 011 11111 23455544 368899999999988776543 1000
Q ss_pred -------Ce-eEEEEeCCCCeEEEEeecC-------------cCCCCeEEEEEeC-CcEEEEeecCC-Ce------EEEE
Q psy10778 421 -------PV-SHVTMSETNGEIASVLQTT-------------KTGGSILRLHTIN-AQLITSLASEL-RI------TSVT 471 (556)
Q Consensus 421 -------~V-~~l~~sp~~~~i~s~s~~~-------------~~~d~~I~iwdi~-g~~i~~~~~~~-~i------~~i~ 471 (556)
.+ ...++++.++.++.++.++ ...++.|.-+|.+ |+.+-...... .. ....
T Consensus 210 ~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~ 289 (488)
T cd00216 210 MWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPS 289 (488)
T ss_pred eecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCe
Confidence 01 1345555667777776211 0012368888886 88877764221 11 1111
Q ss_pred Eee--CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 472 FSN--APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 472 ~s~--~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
+.. .-+|....++++++.+|.+...|..+|+.+....
T Consensus 290 ~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 290 LADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred EEeccccCCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 110 0123222478889999999999999999988765
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG3621|consensus | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.0025 Score=68.06 Aligned_cols=115 Identities=16% Similarity=0.167 Sum_probs=87.1
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 419 NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 419 ~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
...|.--+++..+++++.|+ ..|.+++|+-.+.....++. .+.+..++.+ ++. .++|.|+..|.|.+
T Consensus 33 ~~~v~lTc~dst~~~l~~Gs-----S~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs--~~e---~lvAagt~~g~V~v 102 (726)
T KOG3621|consen 33 PARVKLTCVDATEEYLAMGS-----SAGSVYLYNRHTGEMRKLKNEGATGITCVRSVS--SVE---YLVAAGTASGRVSV 102 (726)
T ss_pred cceEEEEEeecCCceEEEec-----ccceEEEEecCchhhhcccccCccceEEEEEec--chh---HhhhhhcCCceEEe
Confidence 34555566677789999998 78999999998655554432 3445555666 555 68889999999999
Q ss_pred EeCCCCe-----EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 496 WSGYKLA-----HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 496 wd~~~~~-----~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+.+..+. .+......|...|++++|++|+..+++|...|.|..-.+..
T Consensus 103 ~ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 103 FQLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred ehhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 9876533 22222225688999999999999999999999999988877
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.16 E-value=0.3 Score=48.25 Aligned_cols=226 Identities=13% Similarity=0.073 Sum_probs=127.9
Q ss_pred eEEeccCCCeEEEEeCC-CCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccC-C----C
Q psy10778 295 MICWNECDNLIRLKMSK-ELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCK-P----P 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~-~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~-~----~ 368 (556)
.|+.|.++| +.+++.. ....... .+...|..+...++-+.|++-+ |+.++++++..-.......... . .
T Consensus 9 ~L~vGt~~G-l~~~~~~~~~~~~~i---~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~ 83 (275)
T PF00780_consen 9 RLLVGTEDG-LYVYDLSDPSKPTRI---LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSL 83 (275)
T ss_pred EEEEEECCC-EEEEEecCCccceeE---eecceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccc
Confidence 677888888 8888883 2222222 2344599999999877776665 5999999987642211000000 0 0
Q ss_pred eEeeCCCccEEEEE--EccCCC-EEEEEcCCCcEEEEeCCCC-----eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeec
Q psy10778 369 TILLGHSACVTDLY--LCAGFS-VAVSSSEDGTCLLWDINTI-----GYIREIPCVDPNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 369 ~~l~~h~~~V~~l~--~s~~~~-~l~sgs~Dg~I~iwdl~~~-----~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
.........+...+ -...+. .++.+. ..+|.+|..... +..+.+.. ...+..++|. ++.|+.+.
T Consensus 84 ~~~~~~~~~v~~f~~~~~~~~~~~L~va~-kk~i~i~~~~~~~~~f~~~~ke~~l---p~~~~~i~~~--~~~i~v~~-- 155 (275)
T PF00780_consen 84 PTKLPETKGVSFFAVNGGHEGSRRLCVAV-KKKILIYEWNDPRNSFSKLLKEISL---PDPPSSIAFL--GNKICVGT-- 155 (275)
T ss_pred cccccccCCeeEEeeccccccceEEEEEE-CCEEEEEEEECCcccccceeEEEEc---CCCcEEEEEe--CCEEEEEe--
Confidence 00111223344444 112333 444444 448888876542 46677776 6789999998 56777774
Q ss_pred CcCCCCeEEEEEeC-CcEEEEeec-------------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE-
Q psy10778 441 TKTGGSILRLHTIN-AQLITSLAS-------------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL- 505 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~~~-------------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~- 505 (556)
.+...+.|++ +........ ..++..+.. +++ .+|++.. ..-.+.|. .|+..+
T Consensus 156 ----~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---e~Ll~~~--~~g~fv~~-~G~~~r~ 222 (275)
T PF00780_consen 156 ----SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL---SDN---EFLLCYD--NIGVFVNK-NGEPSRK 222 (275)
T ss_pred ----CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe---CCc---eEEEEec--ceEEEEcC-CCCcCcc
Confidence 4567888887 433222211 112333333 344 5666543 22233343 454443
Q ss_pred -EecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 506 -TLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 506 -~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+. =...+.++++. ..+|++.+.+ .|-||++.+++.+..+.
T Consensus 223 ~~i~--W~~~p~~~~~~--~pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 223 STIQ--WSSAPQSVAYS--SPYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred cEEE--cCCchhEEEEE--CCEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 232 13456677775 4577777765 59999999998776654
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.011 Score=62.16 Aligned_cols=166 Identities=14% Similarity=0.071 Sum_probs=103.9
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEE---cCC-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSS---SED-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sg---s~D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
..+..-...+..-+|+|++..++-. ... ..+.++|+.+++..+.+.. .+.-...+|+|||+.++.+.... .
T Consensus 186 ~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~---~g~~~~P~fspDG~~l~f~~~rd--g 260 (425)
T COG0823 186 QKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNF---NGNNGAPAFSPDGSKLAFSSSRD--G 260 (425)
T ss_pred eEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeecc---CCccCCccCCCCCCEEEEEECCC--C
Confidence 3344445567778899998865543 223 4699999999887776665 45566788999999998887522 3
Q ss_pred CCeEEEEEeCCcEEEEeecC-CCeEEEEEeeCCCCCcceEEEEEeCCCe--EEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 445 GSILRLHTINAQLITSLASE-LRITSVTFSNAPEGVSQNVIVTGHSDGT--IQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 445 d~~I~iwdi~g~~i~~~~~~-~~i~~i~~s~~pdg~~~~~l~tg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
.-.|+++|+.++.+..+.+. +.-+.-.|+ |+|. .++.+.+..|. |.+++...... ..+.. ....-..-.|+
T Consensus 261 ~~~iy~~dl~~~~~~~Lt~~~gi~~~Ps~s--pdG~--~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~-~~~~~~~p~~S 334 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLTNGFGINTSPSWS--PDGS--KIVFTSDRGGRPQIYLYDLEGSQV-TRLTF-SGGGNSNPVWS 334 (425)
T ss_pred CccEEEEcCCCCcceecccCCccccCccCC--CCCC--EEEEEeCCCCCcceEEECCCCCce-eEeec-cCCCCcCccCC
Confidence 34566777776655555433 333356777 8993 34445555565 55556544433 44432 12222277899
Q ss_pred cCCCEEEEEcC-CCc--EEEEEcCCCC
Q psy10778 522 CDSQHLYASNT-EGL--VIIWESSSHN 545 (556)
Q Consensus 522 ~dg~~l~sgs~-Dg~--V~vwdl~~~~ 545 (556)
|||++++..+. +|. |.+.++.++.
T Consensus 335 pdG~~i~~~~~~~g~~~i~~~~~~~~~ 361 (425)
T COG0823 335 PDGDKIVFESSSGGQWDIDKNDLASGG 361 (425)
T ss_pred CCCCEEEEEeccCCceeeEEeccCCCC
Confidence 99999887664 344 6666665544
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.15 E-value=0.038 Score=56.17 Aligned_cols=139 Identities=18% Similarity=0.281 Sum_probs=91.1
Q ss_pred CCEEEEEcC----------CCcEEEEeCCCC-------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 387 FSVAVSSSE----------DGTCLLWDINTI-------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 387 ~~~l~sgs~----------Dg~I~iwdl~~~-------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
..+++.|+. .|.|.++++... +.+..... .++|++++-- ++.++++. ++.|.
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~---~g~V~ai~~~--~~~lv~~~------g~~l~ 110 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEV---KGPVTAICSF--NGRLVVAV------GNKLY 110 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEE---SS-EEEEEEE--TTEEEEEE------TTEEE
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEee---cCcceEhhhh--CCEEEEee------cCEEE
Confidence 356776642 288999999884 22333333 6789888877 44566664 68999
Q ss_pred EEEeC-Cc-EEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecC-CCCCCeEEEEEecC
Q psy10778 450 LHTIN-AQ-LITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNT-NVALPVIAVTYSCD 523 (556)
Q Consensus 450 iwdi~-g~-~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~-~h~~~V~~l~~s~d 523 (556)
+|++. .+ +.... .....+.++... + +++++|+....+.++... ..+.+..+.. .....++++.+-++
T Consensus 111 v~~l~~~~~l~~~~~~~~~~~i~sl~~~----~---~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d 183 (321)
T PF03178_consen 111 VYDLDNSKTLLKKAFYDSPFYITSLSVF----K---NYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVD 183 (321)
T ss_dssp EEEEETTSSEEEEEEE-BSSSEEEEEEE----T---TEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-S
T ss_pred EEEccCcccchhhheecceEEEEEEecc----c---cEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecC
Confidence 99997 44 44333 344567777665 4 689999988888877443 2332333332 23566899999877
Q ss_pred CCEEEEEcCCCcEEEEEcCC
Q psy10778 524 SQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..+++++.+|.+.++....
T Consensus 184 ~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 184 EDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp SSEEEEEETTSEEEEEEE-S
T ss_pred CcEEEEEcCCCeEEEEEECC
Confidence 77999999999999999874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.11 Score=51.46 Aligned_cols=145 Identities=20% Similarity=0.260 Sum_probs=94.5
Q ss_pred CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE--
Q psy10778 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR-- 411 (556)
Q Consensus 334 ~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~-- 411 (556)
..++.|+.|+.+| +.+++..... ...... +...|..+...++-+.++.-+ |+.+.++++.......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~--------~~~~i~--~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~ 72 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPS--------KPTRIL--KLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTS 72 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCc--------cceeEe--ecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccc
Confidence 4578999999988 8888883220 111222 233399999999888777765 4999999988654333
Q ss_pred -------------EeCCCCCCCCeeEEE---EeCCCCeEEEEeecCcCCCCeEEEEEeCC------cEEEEeecCCCeEE
Q psy10778 412 -------------EIPCVDPNTPVSHVT---MSETNGEIASVLQTTKTGGSILRLHTINA------QLITSLASELRITS 469 (556)
Q Consensus 412 -------------~l~~~h~~~~V~~l~---~sp~~~~i~s~s~~~~~~d~~I~iwdi~g------~~i~~~~~~~~i~~ 469 (556)
.+.. ...+...+ -......++++ ....|.+|.... +..+++...+.+.+
T Consensus 73 ~~~~~~~~~~~~~~~~~---~~~v~~f~~~~~~~~~~~L~va------~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~ 143 (275)
T PF00780_consen 73 APLAFPKSRSLPTKLPE---TKGVSFFAVNGGHEGSRRLCVA------VKKKILIYEWNDPRNSFSKLLKEISLPDPPSS 143 (275)
T ss_pred ccccccccccccccccc---cCCeeEEeeccccccceEEEEE------ECCEEEEEEEECCcccccceeEEEEcCCCcEE
Confidence 2222 34455555 12223344444 456888888752 46677778899999
Q ss_pred EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 470 i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
++|. . +.++.|..+ ...+.|+.++.....+
T Consensus 144 i~~~--~-----~~i~v~~~~-~f~~idl~~~~~~~l~ 173 (275)
T PF00780_consen 144 IAFL--G-----NKICVGTSK-GFYLIDLNTGSPSELL 173 (275)
T ss_pred EEEe--C-----CEEEEEeCC-ceEEEecCCCCceEEe
Confidence 9999 3 467777754 4778898876654433
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.011 Score=61.27 Aligned_cols=137 Identities=12% Similarity=0.169 Sum_probs=97.3
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC--------eEEEEeecCcCCCCeEEEEEeC--Cc-E
Q psy10778 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG--------EIASVLQTTKTGGSILRLHTIN--AQ-L 457 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~--------~i~s~s~~~~~~d~~I~iwdi~--g~-~ 457 (556)
++.++.....++-.|+.+|+.+..++. + ..|.-+.+.|+.+ .|+ |- .+..|.-||.+ |. .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~-~--~di~mv~~t~d~K~~Ql~~e~Tlv-GL-----s~n~vfriDpRv~~~~k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF-E--DDINMVDITPDFKFAQLTSEQTLV-GL-----SDNSVFRIDPRVQGKNK 418 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec-c--CCcceeeccCCcchhcccccccEE-ee-----cCCceEEecccccCcce
Confidence 344566667788899999999999988 5 4488888887643 233 22 57888999986 44 2
Q ss_pred EEEee-----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 458 ITSLA-----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 458 i~~~~-----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+.... ......|.+-. .+| ++++|+.+|.||+||. .+..-++.-++...+|..+..+.||++|++.+
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT--~sG----~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATT--ESG----YIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATC- 490 (644)
T ss_pred eeeeeccccccccccceeeec--CCc----eEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEec-
Confidence 22211 23445555555 666 8999999999999997 55554444347789999999999999988655
Q ss_pred CCcEEEEEcC
Q psy10778 533 EGLVIIWESS 542 (556)
Q Consensus 533 Dg~V~vwdl~ 542 (556)
+..+.+-++.
T Consensus 491 ~tyLlLi~t~ 500 (644)
T KOG2395|consen 491 KTYLLLIDTL 500 (644)
T ss_pred ccEEEEEEEe
Confidence 5566666653
|
|
| >KOG4640|consensus | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.004 Score=65.71 Aligned_cols=94 Identities=20% Similarity=0.280 Sum_probs=79.7
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee-cCCCeE-EEEEeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 419 NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA-SELRIT-SVTFSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 419 ~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~-~~~~i~-~i~~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
...+..+.|+|.-..||.+. .+|.|.+..++-+.+.++. ++..++ +++|. ||| ++|++|-.||+|++.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t-----~~gelli~R~n~qRlwtip~p~~~v~~sL~W~--~DG---kllaVg~kdG~I~L~ 89 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRT-----EKGELLIHRLNWQRLWTIPIPGENVTASLCWR--PDG---KLLAVGFKDGTIRLH 89 (665)
T ss_pred ccceEEEEEcCccchhheec-----cCCcEEEEEeccceeEeccCCCCccceeeeec--CCC---CEEEEEecCCeEEEE
Confidence 35688899999999999998 8999999999977778876 666666 99999 999 999999999999999
Q ss_pred eCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 497 SGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 497 d~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
|+.++..+..........|.++.|++
T Consensus 90 Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 90 DVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred EccCCCceeccccccccchheeeccc
Confidence 99999888774323467888888873
|
|
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.12 Score=56.97 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=107.5
Q ss_pred CceEEEEEcCCCCEEEEEe------CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--
Q psy10778 325 ATIATATTAPDCHTLWLGL------TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-- 396 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-- 396 (556)
..+...+.+|+|+.++... .|..-.+|-...+. .......+. ..+.-.|+|+|+.+++.+..
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg--------~~~~lt~g~--~~t~PsWspDG~~lw~v~dg~~ 419 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG--------VAVQVLEGH--SLTRPSWSLDADAVWVVVDGNT 419 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC--------cceeeecCC--CCCCceECCCCCceEEEecCcc
Confidence 4678899999999887765 35555666554331 111222332 37888999998877766432
Q ss_pred ----------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe---C-CcEEEE--
Q psy10778 397 ----------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI---N-AQLITS-- 460 (556)
Q Consensus 397 ----------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi---~-g~~i~~-- 460 (556)
+.+.+.++..++..+ . . ...|..+.|||||..|+... ++.|.+--+ . |. ...
T Consensus 420 ~~~v~~~~~~gql~~~~vd~ge~~~--~--~-~g~Issl~wSpDG~RiA~i~------~g~v~Va~Vvr~~~G~-~~l~~ 487 (591)
T PRK13616 420 VVRVIRDPATGQLARTPVDASAVAS--R--V-PGPISELQLSRDGVRAAMII------GGKVYLAVVEQTEDGQ-YALTN 487 (591)
T ss_pred eEEEeccCCCceEEEEeccCchhhh--c--c-CCCcCeEEECCCCCEEEEEE------CCEEEEEEEEeCCCCc-eeecc
Confidence 233333444333222 2 2 45799999999999999886 467776333 2 43 111
Q ss_pred ---ee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 461 ---LA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 461 ---~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
+. ....+.++.|. .++ . |+++..++.-.+|.+. .|.....+.. ....++.+++=+++ .++..+.+
T Consensus 488 ~~~l~~~l~~~~~~l~W~--~~~---~-L~V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~ 559 (591)
T PRK13616 488 PREVGPGLGDTAVSLDWR--TGD---S-LVVGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDAR 559 (591)
T ss_pred cEEeecccCCccccceEe--cCC---E-EEEEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCC
Confidence 11 23346889999 777 5 4566655555566543 2332222221 23567777777753 56666777
Q ss_pred CcEE
Q psy10778 534 GLVI 537 (556)
Q Consensus 534 g~V~ 537 (556)
|.+.
T Consensus 560 g~~~ 563 (591)
T PRK13616 560 AVLQ 563 (591)
T ss_pred ceEE
Confidence 7443
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.0026 Score=40.59 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=33.0
Q ss_pred eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 502 AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
+....+. .|...|.++.|++++..+++++.||.+++|+
T Consensus 3 ~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLK-GHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEE-ecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 4555665 6788999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=96.91 E-value=0.099 Score=43.56 Aligned_cols=101 Identities=12% Similarity=0.194 Sum_probs=73.3
Q ss_pred eeEEEEeC---CC-CeEEEEeecCcCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEe
Q psy10778 422 VSHVTMSE---TN-GEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWS 497 (556)
Q Consensus 422 V~~l~~sp---~~-~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd 497 (556)
|++|++.. +| ..|++|+ .|..|++|+-. +.+.++...+.+++++-. .. ..++.+..+|+|-+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs-----~D~~IRvf~~~-e~~~Ei~e~~~v~~L~~~--~~----~~F~Y~l~NGTVGvY~ 69 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGS-----DDFEIRVFKGD-EIVAEITETDKVTSLCSL--GG----GRFAYALANGTVGVYD 69 (111)
T ss_pred eeEEEEEecCCCCcceEEEec-----CCcEEEEEeCC-cEEEEEecccceEEEEEc--CC----CEEEEEecCCEEEEEe
Confidence 56666654 22 5788888 89999999765 677788888899999887 44 4799999999999998
Q ss_pred CCCCeEEEEecCCCCCCeEEEEEec-C--C-CEEEEEcCCCcEEE
Q psy10778 498 GYKLAHLLTLNTNVALPVIAVTYSC-D--S-QHLYASNTEGLVII 538 (556)
Q Consensus 498 ~~~~~~~~~~~~~h~~~V~~l~~s~-d--g-~~l~sgs~Dg~V~v 538 (556)
. .+.+..+. ....++++++.. + | ..|++|-++|.|-+
T Consensus 70 ~--~~RlWRiK--SK~~~~~~~~~D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 70 R--SQRLWRIK--SKNQVTSMAFYDINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred C--cceeeeec--cCCCeEEEEEEcCCCCCceEEEEEecCCeEEe
Confidence 5 34444554 344577776554 2 2 47889999998743
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0019 Score=41.30 Aligned_cols=36 Identities=36% Similarity=0.496 Sum_probs=32.6
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...+..|...|.++.|++.+..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 456778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.024 Score=59.88 Aligned_cols=147 Identities=13% Similarity=0.083 Sum_probs=84.1
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
+.+.........+.++|+|+.++. +.||.-.|+.....+.... +.....+|.+ .+.+|+.. ..++|
T Consensus 26 k~lg~~~~~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~-------G~g~~~vw~~-~n~yAv~~-----~~~~I 91 (443)
T PF04053_consen 26 KELGSCEIYPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF-------GSGLSFVWSS-RNRYAVLE-----SSSTI 91 (443)
T ss_dssp EEEEE-SS--SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE-------EE-SEEEE-T-SSEEEEE------TTS-E
T ss_pred ccCCCCCcCCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc-------CceeEEEEec-CccEEEEE-----CCCeE
Confidence 334444555778999999998887 5578888887544333222 2345688888 45677765 67889
Q ss_pred EEE-EeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 449 RLH-TINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 449 ~iw-di~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
.++ +.+.+....+..+..+..+-. | .+|...+.+ .|.+||..+++.++++. . .+|..+.|+++|.++
T Consensus 92 ~I~kn~~~~~~k~i~~~~~~~~If~-----G---~LL~~~~~~-~i~~yDw~~~~~i~~i~--v-~~vk~V~Ws~~g~~v 159 (443)
T PF04053_consen 92 KIYKNFKNEVVKSIKLPFSVEKIFG-----G---NLLGVKSSD-FICFYDWETGKLIRRID--V-SAVKYVIWSDDGELV 159 (443)
T ss_dssp EEEETTEE-TT-----SS-EEEEE------S---SSEEEEETT-EEEEE-TTT--EEEEES--S--E-EEEEE-TTSSEE
T ss_pred EEEEcCccccceEEcCCcccceEEc-----C---cEEEEECCC-CEEEEEhhHcceeeEEe--c-CCCcEEEEECCCCEE
Confidence 986 343222223333333444422 5 667776654 89999999999999997 2 348999999999999
Q ss_pred EEEcCCCcEEEEEcC
Q psy10778 528 YASNTEGLVIIWESS 542 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~ 542 (556)
+..+.+ .+.|++.+
T Consensus 160 al~t~~-~i~il~~~ 173 (443)
T PF04053_consen 160 ALVTKD-SIYILKYN 173 (443)
T ss_dssp EEE-S--SEEEEEE-
T ss_pred EEEeCC-eEEEEEec
Confidence 988865 66666543
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >KOG4649|consensus | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.16 Score=48.49 Aligned_cols=141 Identities=13% Similarity=0.110 Sum_probs=94.8
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCC
Q psy10778 388 SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELR 466 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~ 466 (556)
.+++.||..+.++--|..+|+.+..-.. ...+.+-++- -|..++.|+ ..|.+++.+.+ |..+..+...+.
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~il---g~RiE~sa~v-vgdfVV~GC-----y~g~lYfl~~~tGs~~w~f~~~~~ 94 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAIL---GVRIECSAIV-VGDFVVLGC-----YSGGLYFLCVKTGSQIWNFVILET 94 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhh---CceeeeeeEE-ECCEEEEEE-----ccCcEEEEEecchhheeeeeehhh
Confidence 4778899999999999999987765443 3444443333 367899999 89999999998 777776654444
Q ss_pred eEEEE-EeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 467 ITSVT-FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 467 i~~i~-~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|.+-+ .. +++ .++..|+.|+..+..|.++..++....-+ .+.-.+-+..+-...|+.+...|.|.--+.+.
T Consensus 95 vk~~a~~d--~~~---glIycgshd~~~yalD~~~~~cVykskcg-G~~f~sP~i~~g~~sly~a~t~G~vlavt~~~ 166 (354)
T KOG4649|consen 95 VKVRAQCD--FDG---GLIYCGSHDGNFYALDPKTYGCVYKSKCG-GGTFVSPVIAPGDGSLYAAITAGAVLAVTKNP 166 (354)
T ss_pred hccceEEc--CCC---ceEEEecCCCcEEEecccccceEEecccC-CceeccceecCCCceEEEEeccceEEEEccCC
Confidence 43322 23 566 79999999999999999999988886632 22223334455233445555555555444433
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=96.66 E-value=0.43 Score=49.39 Aligned_cols=204 Identities=14% Similarity=0.094 Sum_probs=99.0
Q ss_pred CCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeC---CC----ccEEEEEEccCCCEEEEE--cC----CCcEE
Q psy10778 335 DCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLG---HS----ACVTDLYLCAGFSVAVSS--SE----DGTCL 400 (556)
Q Consensus 335 dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~---h~----~~V~~l~~s~~~~~l~sg--s~----Dg~I~ 400 (556)
+.++|+..+ .++.|.|.|+.+.....+.. +++.. +. +.-..+..-|+|++++|+ +. -|-+.
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~-----KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ 160 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLH-----KVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFV 160 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEE-----EEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEE
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceE-----eeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEE
Confidence 456777776 77899999998764433322 33322 11 222334455788888884 22 35688
Q ss_pred EEeCCCCeEEEEeCCCCC--CCCeeEEEEeCCCCeEEEEeecC---------------cCCCCeEEEEEeC-CcEEEEee
Q psy10778 401 LWDINTIGYIREIPCVDP--NTPVSHVTMSETNGEIASVLQTT---------------KTGGSILRLHTIN-AQLITSLA 462 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~--~~~V~~l~~sp~~~~i~s~s~~~---------------~~~d~~I~iwdi~-g~~i~~~~ 462 (556)
+.|-++.+....++. .. ..--..+.+.|..+.+++..-.. ...+.++.+||.. .+.++++.
T Consensus 161 llD~~tf~v~g~We~-~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~id 239 (461)
T PF05694_consen 161 LLDGETFEVKGRWEK-DRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTID 239 (461)
T ss_dssp EE-TTT--EEEE--S-B-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEE
T ss_pred EEcCccccccceecc-CCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEe
Confidence 888888777777665 20 12345677888888888765322 1156899999998 77888886
Q ss_pred cC---CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC-CCC----eEEEEecCC----C------------CCCeEEE
Q psy10778 463 SE---LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG-YKL----AHLLTLNTN----V------------ALPVIAV 518 (556)
Q Consensus 463 ~~---~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~-~~~----~~~~~~~~~----h------------~~~V~~l 518 (556)
.. .....+.|...|+.. .-++.+.-.+.|..|-. ..+ +.+.++... - ..-|+.|
T Consensus 240 Lg~~g~~pLEvRflH~P~~~--~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI 317 (461)
T PF05694_consen 240 LGEEGQMPLEVRFLHDPDAN--YGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDI 317 (461)
T ss_dssp S-TTEEEEEEEEE-SSTT----EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------E
T ss_pred cCCCCCceEEEEecCCCCcc--ceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeE
Confidence 54 346678888666551 22333333444444432 333 233333310 0 2457999
Q ss_pred EEecCCCEEEEEc-CCCcEEEEEcCCCCC
Q psy10778 519 TYSCDSQHLYASN-TEGLVIIWESSSHNR 546 (556)
Q Consensus 519 ~~s~dg~~l~sgs-~Dg~V~vwdl~~~~~ 546 (556)
..|.|.++|+.++ ..|.|+.||+.+...
T Consensus 318 ~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 318 LISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp EE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred EEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 9999999998766 589999999988543
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=96.65 E-value=0.87 Score=49.63 Aligned_cols=59 Identities=12% Similarity=0.251 Sum_probs=40.9
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.|.-+|+.+++.+...... .+...-.+.-.+.+++.++.+|.++.+|.++++.+-.++
T Consensus 441 g~l~AiD~~tGk~~W~~~~~--~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~ 499 (527)
T TIGR03075 441 GSLIAWDPITGKIVWEHKED--FPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFK 499 (527)
T ss_pred eeEEEEeCCCCceeeEecCC--CCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEe
Confidence 56888898899888877632 221111122345677788889999999999998776553
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.0036 Score=58.33 Aligned_cols=141 Identities=11% Similarity=0.038 Sum_probs=90.9
Q ss_pred EEEEEcCCCcEEEEeCCCCeEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEeec-C
Q psy10778 389 VAVSSSEDGTCLLWDINTIGYI-REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLAS-E 464 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~~-~ 464 (556)
.+..-+.||.|.-++++..+.. +.-.- + ... .....-+..+++|+ .+|.|++|..+ |........ .
T Consensus 32 ~l~~~sa~~~v~~~~~~k~k~s~rse~~-~-~e~---~~v~~~~~~~~vG~-----~dg~v~~~n~n~~g~~~d~~~s~~ 101 (238)
T KOG2444|consen 32 LLRATSADGLVRERKVRKHKESCRSERF-I-DEG---QRVVTASAKLMVGT-----SDGAVYVFNWNLEGAHSDRVCSGE 101 (238)
T ss_pred hhccccCCcccccchhhhhhhhhhhhhh-h-hcc---eeecccCceEEeec-----ccceEEEecCCccchHHHhhhccc
Confidence 4445577888888877653321 11111 1 111 22222346677787 89999999987 333222222 2
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC-CCeEEEEEecCCCEEEEE--cCCCcEEEEEc
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA-LPVIAVTYSCDSQHLYAS--NTEGLVIIWES 541 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~sg--s~Dg~V~vwdl 541 (556)
..+-++.-. ..++ .+..++..+|.|+.|+..-.+.+.... .|. .++.....+..++.++.+ |.|..++.|++
T Consensus 102 e~i~~~Ip~-~~~~---~~~c~~~~dg~ir~~n~~p~k~~g~~g-~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~v 176 (238)
T KOG2444|consen 102 ESIDLGIPN-GRDS---SLGCVGAQDGRIRACNIKPNKVLGYVG-QHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNV 176 (238)
T ss_pred ccceecccc-cccc---ceeEEeccCCceeeeccccCceeeeec-cccCCCcceeEEecCCceEEeeccccchhhhhcch
Confidence 333333211 1333 688999999999999998888777776 566 677777777778888888 88899999998
Q ss_pred CCC
Q psy10778 542 SSH 544 (556)
Q Consensus 542 ~~~ 544 (556)
..-
T Consensus 177 e~~ 179 (238)
T KOG2444|consen 177 EKI 179 (238)
T ss_pred hhh
Confidence 763
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.21 Score=52.62 Aligned_cols=168 Identities=13% Similarity=0.074 Sum_probs=85.2
Q ss_pred cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC-C-----CCCC
Q psy10778 347 NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC-V-----DPNT 420 (556)
Q Consensus 347 ~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~-~-----h~~~ 420 (556)
.|+||+.... ++..+.--.+.|.++.|+.+. .|+....||.++++|+. |+....+.. . . ..
T Consensus 62 ~I~iys~sG~----------ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~-G~~~fsl~~~i~~~~v~-e~ 128 (410)
T PF04841_consen 62 SIQIYSSSGK----------LLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF-GEFQFSLGEEIEEEKVL-EC 128 (410)
T ss_pred EEEEECCCCC----------EeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC-CceeechhhhccccCcc-cc
Confidence 3777765542 223333233889999998865 45566789999999987 444111110 0 1 11
Q ss_pred CeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE-E-EEee-cCC---------CeEE-EEEeeCCCCCcceEEEEE
Q psy10778 421 PVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL-I-TSLA-SEL---------RITS-VTFSNAPEGVSQNVIVTG 487 (556)
Q Consensus 421 ~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~-i-~~~~-~~~---------~i~~-i~~s~~pdg~~~~~l~tg 487 (556)
.+....+..+ +.++.. .++.+.+.+-..+. . .... ... .... ..++ .+. ...+..
T Consensus 129 ~i~~~~~~~~-GivvLt------~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~--~~~---~~~i~~ 196 (410)
T PF04841_consen 129 RIFAIWFYKN-GIVVLT------GNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLS--SDR---VVEILL 196 (410)
T ss_pred cccccccCCC-CEEEEC------CCCeEEEEeCccccchhhccccCCCcccccccccccccceEee--cCc---ceEEEE
Confidence 1222222223 333332 34454444322221 1 1110 000 0111 1122 222 233344
Q ss_pred eCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 488 HSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 488 ~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
..++.+.+.+....+. +. ..+++..|++||+|+++|.-..+|.+.+.+..-.
T Consensus 197 ~~g~~i~~i~~~~~~~---i~--~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~ 248 (410)
T PF04841_consen 197 ANGETIYIIDENSFKQ---ID--SDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFS 248 (410)
T ss_pred ecCCEEEEEEcccccc---cc--CCCCeEEEEECCCCCEEEEEECCCCEEEEECccc
Confidence 4445555443222211 22 2468999999999999999999999988875433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=96.51 E-value=0.07 Score=58.61 Aligned_cols=157 Identities=10% Similarity=0.078 Sum_probs=92.1
Q ss_pred CCCccEEEEEEccCCCEEEEEc------CCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC---
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSS------EDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT--- 441 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs------~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~--- 441 (556)
+....+...+++|+|+.++... .|+ .+.+++.. +.. +.+.. ....+.-.|+|+|+.|++.....
T Consensus 347 g~~~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~g-g~~-~~lt~---g~~~t~PsWspDG~~lw~v~dg~~~~ 421 (591)
T PRK13616 347 GQMGNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLG-GVA-VQVLE---GHSLTRPSWSLDADAVWVVVDGNTVV 421 (591)
T ss_pred ccccCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCC-Ccc-eeeec---CCCCCCceECCCCCceEEEecCcceE
Confidence 3334678899999999776554 244 44455542 333 44433 23488899999999888875210
Q ss_pred ----cCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE---EeCCCCe-EE---EEecCC
Q psy10778 442 ----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL---WSGYKLA-HL---LTLNTN 510 (556)
Q Consensus 442 ----~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i---wd~~~~~-~~---~~~~~~ 510 (556)
....+.+.+.++++..... .....|..+.|| ||| ..++... +|.|++ -....|. .+ ..+..+
T Consensus 422 ~v~~~~~~gql~~~~vd~ge~~~-~~~g~Issl~wS--pDG---~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~ 494 (591)
T PRK13616 422 RVIRDPATGQLARTPVDASAVAS-RVPGPISELQLS--RDG---VRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPG 494 (591)
T ss_pred EEeccCCCceEEEEeccCchhhh-ccCCCcCeEEEC--CCC---CEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecc
Confidence 0022344444554322222 335679999999 999 5555544 477777 4433443 11 112213
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
....+.++.|..++.++ ++..++...+|.+.
T Consensus 495 l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 495 LGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred cCCccccceEecCCEEE-EEecCCCCceEEEe
Confidence 33456889999999855 55555655566653
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.49 E-value=1.1 Score=45.04 Aligned_cols=210 Identities=10% Similarity=-0.023 Sum_probs=116.7
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC-CccE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH-SACV 378 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h-~~~V 378 (556)
-..+.|.-|+..+++..... +.+.+.++.....+..|+++. .-+.+++.+.+... .. ......+. ...-
T Consensus 44 I~~~~i~r~~~~~g~~~~~~---~p~~~~~~~~~d~~g~Lv~~~--~g~~~~~~~~~~~~--t~---~~~~~~~~~~~r~ 113 (307)
T COG3386 44 ILGGRIHRLDPETGKKRVFP---SPGGFSSGALIDAGGRLIACE--HGVRLLDPDTGGKI--TL---LAEPEDGLPLNRP 113 (307)
T ss_pred CCCCeEEEecCCcCceEEEE---CCCCcccceeecCCCeEEEEc--cccEEEeccCCcee--EE---eccccCCCCcCCC
Confidence 34456666666544332222 233345555444555555544 23455665433110 00 00011111 1345
Q ss_pred EEEEEccCCCEEEEEcC-----------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 379 TDLYLCAGFSVAVSSSE-----------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~-----------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
+.+.+.|+|.+-++... -|.++..|. .+..++.+.. + -..-+.|+||||++.+..+-. ..+.
T Consensus 114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~-~-~~~~NGla~SpDg~tly~aDT----~~~~ 186 (307)
T COG3386 114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD-D-LTIPNGLAFSPDGKTLYVADT----PANR 186 (307)
T ss_pred CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC-c-EEecCceEECCCCCEEEEEeC----CCCe
Confidence 67788888886555333 143444454 4556666555 4 455678999999988887753 4577
Q ss_pred EEEEEeC---CcE---E--EEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCC-eEEEEeCCCCeEEEEecCCCCCCeEE
Q psy10778 448 LRLHTIN---AQL---I--TSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDG-TIQLWSGYKLAHLLTLNTNVALPVIA 517 (556)
Q Consensus 448 I~iwdi~---g~~---i--~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg-~I~iwd~~~~~~~~~~~~~h~~~V~~ 517 (556)
|.-|++. +.. . ... ...+..-.++.. .+| ++-+++..+| .|.+|+.. ++++..+.. ....+++
T Consensus 187 i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vD--adG---~lw~~a~~~g~~v~~~~pd-G~l~~~i~l-P~~~~t~ 259 (307)
T COG3386 187 IHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVD--ADG---NLWVAAVWGGGRVVRFNPD-GKLLGEIKL-PVKRPTN 259 (307)
T ss_pred EEEEecCcccCccCCcceEEEccCCCCCCCceEEe--CCC---CEEEecccCCceEEEECCC-CcEEEEEEC-CCCCCcc
Confidence 8888764 211 1 111 123555667776 777 5664554444 89999986 999988873 3477888
Q ss_pred EEEec-CCCEEE-EEcCC
Q psy10778 518 VTYSC-DSQHLY-ASNTE 533 (556)
Q Consensus 518 l~~s~-dg~~l~-sgs~D 533 (556)
++|-- +.+.|+ ++...
T Consensus 260 ~~FgG~~~~~L~iTs~~~ 277 (307)
T COG3386 260 PAFGGPDLNTLYITSARS 277 (307)
T ss_pred ceEeCCCcCEEEEEecCC
Confidence 88864 344444 44433
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=96.45 E-value=0.24 Score=47.93 Aligned_cols=219 Identities=13% Similarity=0.088 Sum_probs=124.9
Q ss_pred EEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCC-----CcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 306 RLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTS-----GNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 306 ~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
.++|..+.+...++... ...---.=.|++||.+|+..-.| |.|-|||...+ ...+..+..|.-.-.
T Consensus 94 ~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~--------fqrvgE~~t~GiGpH 165 (366)
T COG3490 94 MVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG--------FQRVGEFSTHGIGPH 165 (366)
T ss_pred EEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc--------cceecccccCCcCcc
Confidence 45666655444443321 00111123589999999876433 78999998754 133456777777778
Q ss_pred EEEEccCCCEEEEEcC------------------CCcEEEEeCCCCeEEEEeCCC---CCCCCeeEEEEeCCCCeEEEEe
Q psy10778 380 DLYLCAGFSVAVSSSE------------------DGTCLLWDINTIGYIREIPCV---DPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~------------------Dg~I~iwdl~~~~~v~~l~~~---h~~~~V~~l~~sp~~~~i~s~s 438 (556)
.+.|.+||+.++.+.. .-++.+.|..+|+.+.+...+ + .-.|+.++..+||...+.+-
T Consensus 166 ev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~-~lSiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 166 EVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLR-QLSIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred eeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhh-hcceeeeeeCCCCcEEEEEE
Confidence 8999999998887542 123555565566665543321 2 45688888888876555443
Q ss_pred ecCcCCCCeEEE-EEeCCcEEEEeec--------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 439 QTTKTGGSILRL-HTINAQLITSLAS--------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 439 ~~~~~~d~~I~i-wdi~g~~i~~~~~--------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
..+...|.--.+ .-..|+.+..+.. ...|-+++.+. .++ -+.+|.-..+...+||..+|..+..-..
T Consensus 245 y~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~-~~g---lV~lTSP~GN~~vi~da~tG~vv~~a~l 320 (366)
T COG3490 245 YRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANR-RDG---LVALTSPRGNRAVIWDAATGAVVSEAAL 320 (366)
T ss_pred eeCCCccCCcceeeccCCCcCcccCCCHHHHHHHHhhhhheeecc-cCC---eEEEecCCCCeEEEEEcCCCcEEecccc
Confidence 222111111111 1112444444322 24567777762 344 3455555667788999999998766542
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.....++-. ..-+++.+.+|.+..+.-.
T Consensus 321 ---~daaGva~~--~~gf~vssg~G~~~~~s~~ 348 (366)
T COG3490 321 ---PDAAGVAAA--KGGFAVSSGQGRIIFYSRA 348 (366)
T ss_pred ---cccccceec--cCceEEecCCceEEecccc
Confidence 122233333 3335566678888877543
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.011 Score=66.12 Aligned_cols=104 Identities=20% Similarity=0.337 Sum_probs=78.3
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE---EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTINAQLI---TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL 501 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i---~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~ 501 (556)
++..-.+..|+.|+ ..|.+...|.+|.+- +-....++|++++|+ .+| ..++.|-.+|.|.+||+..+
T Consensus 93 ~s~a~~~~~ivi~T-----s~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn--~dg---~~l~~G~~~G~V~v~D~~~~ 162 (1206)
T KOG2079|consen 93 ISSAIVVVPIVIGT-----SHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN--QDG---SLLLAGLGDGHVTVWDMHRA 162 (1206)
T ss_pred eeeeeeeeeEEEEc-----CchhhhhhhhhcccchhhcCCccCCcceeeEec--CCC---ceeccccCCCcEEEEEccCC
Confidence 33333456788887 788899888876533 222457899999999 899 89999999999999999999
Q ss_pred eEEEEecCCCCCCeEEE---EEecCCCEEEEEcCCCcEEEEEc
Q psy10778 502 AHLLTLNTNVALPVIAV---TYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l---~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
+.++.+. .|..+.+++ .+..++..++++...|. +|.+
T Consensus 163 k~l~~i~-e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 163 KILKVIT-EHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cceeeee-ecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 9888887 455555554 44556678888888887 5654
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.19 Score=52.49 Aligned_cols=201 Identities=12% Similarity=0.164 Sum_probs=106.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE---eeCCCccEEEEEEcc-----CC---CEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI---LLGHSACVTDLYLCA-----GF---SVA 390 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~---l~~h~~~V~~l~~s~-----~~---~~l 390 (556)
...+.|++++.+. =-++|.|..+|.+.|.|++.. ..+....+.. -......|+++.|+- |+ -.+
T Consensus 84 ~~~g~vtal~~S~-iGFvaigy~~G~l~viD~RGP----avI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L 158 (395)
T PF08596_consen 84 AKQGPVTALKNSD-IGFVAIGYESGSLVVIDLRGP----AVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICL 158 (395)
T ss_dssp --S-SEEEEEE-B-TSEEEEEETTSEEEEEETTTT----EEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEE
T ss_pred ccCCcEeEEecCC-CcEEEEEecCCcEEEEECCCC----eEEeeccccccccccccccCeeEEEEEEEecCCCcccceEE
Confidence 3478999999974 459999999999999999643 1110001111 112344688888862 22 378
Q ss_pred EEEcCCCcEEEEeCC--C-CeE----EEEeCCCCCCCCeeEEE-EeCCC---------------------CeEEEEeecC
Q psy10778 391 VSSSEDGTCLLWDIN--T-IGY----IREIPCVDPNTPVSHVT-MSETN---------------------GEIASVLQTT 441 (556)
Q Consensus 391 ~sgs~Dg~I~iwdl~--~-~~~----v~~l~~~h~~~~V~~l~-~sp~~---------------------~~i~s~s~~~ 441 (556)
+.|...|.+.+|.+. . +.. ...... + .++|..+. ++.+. .+++++
T Consensus 159 ~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~-~-~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvv---- 232 (395)
T PF08596_consen 159 LVGTNSGNVLTFKILPSSNGRFSVQFAGATTN-H-DSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVV---- 232 (395)
T ss_dssp EEEETTSEEEEEEEEE-GGG-EEEEEEEEE---S-S----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE----
T ss_pred EEEeCCCCEEEEEEecCCCCceEEEEeecccc-C-CCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEE----
Confidence 889999999999774 1 222 222223 3 56666555 33221 234444
Q ss_pred cCCCCeEEEEEeC-CcEEEEeecCC--CeEEEEEeeC---CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC---CC
Q psy10778 442 KTGGSILRLHTIN-AQLITSLASEL--RITSVTFSNA---PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN---VA 512 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~~~~--~i~~i~~s~~---pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~---h~ 512 (556)
....++++..- ++...... .. ....+++-+. ..+ ..|++-..+|.++++.+...+.+..+... ..
T Consensus 233 --Se~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~---~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~ 306 (395)
T PF08596_consen 233 --SESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG---YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDS 306 (395)
T ss_dssp ---SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE---EEEEEEETTSEEEEEETTT--EEEEEE-SS---H
T ss_pred --cccceEEEeCCCCcccceee-ccccccceEEEEeecccCCc---eEEEEEECCCcEEEEECCCchHhhcccCCCcccc
Confidence 46788998875 44333222 32 2333444211 234 68888899999999999999988887631 11
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 513 LPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
..+....++++|..++-.+.. .+.++.
T Consensus 307 ~~~~~ssis~~Gdi~~~~gps-E~~l~s 333 (395)
T PF08596_consen 307 RRLSSSSISRNGDIFYWTGPS-EIQLFS 333 (395)
T ss_dssp HHHTT-EE-TTS-EEEE-SSS-EEEEEE
T ss_pred ccccccEECCCCCEEEEeCcc-cEEEEE
Confidence 234456778889877665533 344443
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=96.16 E-value=0.41 Score=49.36 Aligned_cols=230 Identities=13% Similarity=0.103 Sum_probs=119.5
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC------
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS------ 375 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~------ 375 (556)
.+.+.++|+++++...+.. ....+....|+|+|+.+|... ++.|.+++...+.... ......-..+.|-.
T Consensus 22 ~~~y~i~d~~~~~~~~l~~--~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~-lT~dg~~~i~nG~~dwvyeE 97 (353)
T PF00930_consen 22 KGDYYIYDIETGEITPLTP--PPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQ-LTTDGEPGIYNGVPDWVYEE 97 (353)
T ss_dssp EEEEEEEETTTTEEEESS---EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEE-SES--TTTEEESB--HHHHH
T ss_pred ceeEEEEecCCCceEECcC--CccccccceeecCCCeeEEEe-cCceEEEECCCCCeEE-eccccceeEEcCccceeccc
Confidence 3578889998865444332 146788899999999999887 5788888765431000 00000001111111
Q ss_pred ---ccEEEEEEccCCCEEEEEcCC-C-----------------------------------cEEEEeCCCCeEEE-EeC-
Q psy10778 376 ---ACVTDLYLCAGFSVAVSSSED-G-----------------------------------TCLLWDINTIGYIR-EIP- 414 (556)
Q Consensus 376 ---~~V~~l~~s~~~~~l~sgs~D-g-----------------------------------~I~iwdl~~~~~v~-~l~- 414 (556)
+.-..+.||||++.|+....| . .+.|+|+.+++... ...
T Consensus 98 Ev~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~ 177 (353)
T PF00930_consen 98 EVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPN 177 (353)
T ss_dssp HTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---H
T ss_pred cccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeecc
Confidence 123568899999988764322 1 14445665554321 111
Q ss_pred ---CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc--EEEEeecCCCe---EEEEEeeCCCCCcceEEE
Q psy10778 415 ---CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ--LITSLASELRI---TSVTFSNAPEGVSQNVIV 485 (556)
Q Consensus 415 ---~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~--~i~~~~~~~~i---~~i~~s~~pdg~~~~~l~ 485 (556)
. . ..-+..+.|.+++..++..-.++......+.++|.. |. .+........+ ....+.. +++. .+|.
T Consensus 178 ~~~~-~-~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~-~~~~--~~l~ 252 (353)
T PF00930_consen 178 SLNP-Q-DYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLG-PDGN--EFLW 252 (353)
T ss_dssp HHHT-S-SEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-T-TTSS--EEEE
T ss_pred ccCC-C-ccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeeccccccc-CCCC--EEEE
Confidence 1 2 355788899999885554443332233455666764 32 33333333333 2333321 3332 5666
Q ss_pred EEeCCCe--EEEEeCCCCeEEEEecCCCCCCeEE-EEEecCCCEEE-EEcCCC----cEEEEEcC
Q psy10778 486 TGHSDGT--IQLWSGYKLAHLLTLNTNVALPVIA-VTYSCDSQHLY-ASNTEG----LVIIWESS 542 (556)
Q Consensus 486 tg~~dg~--I~iwd~~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~-sgs~Dg----~V~vwdl~ 542 (556)
....+|- |.+++...+. .+.+. ...-.|+. +.++++++.|+ ++..++ .|+.-++.
T Consensus 253 ~s~~~G~~hly~~~~~~~~-~~~lT-~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~ 315 (353)
T PF00930_consen 253 ISERDGYRHLYLYDLDGGK-PRQLT-SGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLD 315 (353)
T ss_dssp EEETTSSEEEEEEETTSSE-EEESS--SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETT
T ss_pred EEEcCCCcEEEEEcccccc-eeccc-cCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeC
Confidence 6667775 4445554444 55665 33566755 67888876555 555432 45555555
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=96.06 E-value=1.1 Score=45.01 Aligned_cols=133 Identities=8% Similarity=0.050 Sum_probs=86.7
Q ss_pred ceEEEEEcCCCCEEEEEeC-----C----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc-C
Q psy10778 326 TIATATTAPDCHTLWLGLT-----S----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS-E 395 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~-----D----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-~ 395 (556)
.-+.+...|+|.+-++... . ..=.+|.+.... ..++.+..+-..-+.|+||||++.+..+. .
T Consensus 112 r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g--------~~~~l~~~~~~~~NGla~SpDg~tly~aDT~ 183 (307)
T COG3386 112 RPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDG--------GVVRLLDDDLTIPNGLAFSPDGKTLYVADTP 183 (307)
T ss_pred CCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCC--------CEEEeecCcEEecCceEECCCCCEEEEEeCC
Confidence 4456777888876665433 0 112455555210 22344455555667899999998766654 4
Q ss_pred CCcEEEEeCCC--C----eE-EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC-CeEEEEEeCCcEEEEeecC-CC
Q psy10778 396 DGTCLLWDINT--I----GY-IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG-SILRLHTINAQLITSLASE-LR 466 (556)
Q Consensus 396 Dg~I~iwdl~~--~----~~-v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d-~~I~iwdi~g~~i~~~~~~-~~ 466 (556)
.+.|.-+++.. + +. ...... . .+..-.++...+|.+.+++. .+ +.|..|+.+|+++..+... ..
T Consensus 184 ~~~i~r~~~d~~~g~~~~~~~~~~~~~-~-~G~PDG~~vDadG~lw~~a~-----~~g~~v~~~~pdG~l~~~i~lP~~~ 256 (307)
T COG3386 184 ANRIHRYDLDPATGPIGGRRGFVDFDE-E-PGLPDGMAVDADGNLWVAAV-----WGGGRVVRFNPDGKLLGEIKLPVKR 256 (307)
T ss_pred CCeEEEEecCcccCccCCcceEEEccC-C-CCCCCceEEeCCCCEEEecc-----cCCceEEEECCCCcEEEEEECCCCC
Confidence 57888887752 1 11 112222 2 46667788888888775444 33 4999999999999999877 88
Q ss_pred eEEEEEe
Q psy10778 467 ITSVTFS 473 (556)
Q Consensus 467 i~~i~~s 473 (556)
+++++|-
T Consensus 257 ~t~~~Fg 263 (307)
T COG3386 257 PTNPAFG 263 (307)
T ss_pred CccceEe
Confidence 9999998
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.64 Score=51.09 Aligned_cols=229 Identities=11% Similarity=0.035 Sum_probs=117.5
Q ss_pred eEEeccCC------CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC-C-----cEEEEEeeeccCcccc
Q psy10778 295 MICWNECD------NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS-G-----NILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~D------g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D-g-----~I~vwd~~~~~~~~~~ 362 (556)
+++.|+.+ ..+..+|..++.............-.+++.. ++...++||.| | ++..||...+..
T Consensus 287 l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W---- 361 (571)
T KOG4441|consen 287 LVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQW---- 361 (571)
T ss_pred EEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCce----
Confidence 66677766 4677888887755444333333333344443 45888999988 3 456666665421
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCc-----EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEE
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGT-----CLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIAS 436 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~-----I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s 436 (556)
..+..+........... -+|.+.|.|+.||. +-.||..+.+.-..-.. .......+... +|...++
T Consensus 362 ---~~~a~M~~~R~~~~v~~--l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m---~~~r~~~gv~~~~g~iYi~ 433 (571)
T KOG4441|consen 362 ---TPVAPMNTKRSDFGVAV--LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM---LTRRSGHGVAVLGGKLYII 433 (571)
T ss_pred ---eccCCccCccccceeEE--ECCEEEEEeccccccccccEEEecCCCCcccccCCC---CcceeeeEEEEECCEEEEE
Confidence 12222222222222222 25778888998864 77778776543221111 11222222222 3455555
Q ss_pred EeecCcC-CCCeEEEEEeCCcE---EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCe-----EEEEeCCCCeEEEEe
Q psy10778 437 VLQTTKT-GGSILRLHTINAQL---ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGT-----IQLWSGYKLAHLLTL 507 (556)
Q Consensus 437 ~s~~~~~-~d~~I~iwdi~g~~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-----I~iwd~~~~~~~~~~ 507 (556)
|+.+... .-..+..||..... +..+.....-..++.. ++ .+.+.|+.|+. |..||..+.+....-
T Consensus 434 GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~---~~---~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~ 507 (571)
T KOG4441|consen 434 GGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVL---NG---KIYVVGGFDGTSALSSVERYDPETNQWTMVA 507 (571)
T ss_pred cCcCCCccccceEEEEcCCCCceeecCCcccccccceEEEE---CC---EEEEECCccCCCccceEEEEcCCCCceeEcc
Confidence 5533211 22567788876322 2222222222334444 35 78888887763 677887665533221
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCC-----cEEEEEcCC
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEG-----LVIIWESSS 543 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg-----~V~vwdl~~ 543 (556)
.......-..++ .-+++..++|+.|| +|-.||..+
T Consensus 508 ~m~~~rs~~g~~-~~~~~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 508 PMTSPRSAVGVV-VLGGKLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred cCccccccccEE-EECCEEEEEecccCccccceeEEcCCCC
Confidence 111111111222 22467777888876 567777665
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.92 E-value=2.8 Score=44.15 Aligned_cols=194 Identities=10% Similarity=0.005 Sum_probs=106.3
Q ss_pred eEEEEEcCCCCEEEEE-eCCC----cEEEEEeeeccCcccccccCCCe-EeeCCCccEEEEEEccCCCEEEEEcCCC---
Q psy10778 327 IATATTAPDCHTLWLG-LTSG----NILVYEYELNASTNKIEFCKPPT-ILLGHSACVTDLYLCAGFSVAVSSSEDG--- 397 (556)
Q Consensus 327 V~~i~~s~dg~~l~tg-s~Dg----~I~vwd~~~~~~~~~~~~~~~~~-~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--- 397 (556)
+...+++|+|+++|.+ +..| +++++|+.++ +.+. .+.. ..-..+.|.++++.++....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---------~~l~d~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---------KFLPDGIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---------EEEEEEEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---------cCcCCcccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 4467899999998876 3333 5889998876 1111 1111 1112399999988766554332
Q ss_pred --------cEEEEeCCCCeE--EEEeCCCCCCCC-eeEEEEeCCCCeEEEEeecCcCCC-CeEEEEEeCC------cEEE
Q psy10778 398 --------TCLLWDINTIGY--IREIPCVDPNTP-VSHVTMSETNGEIASVLQTTKTGG-SILRLHTINA------QLIT 459 (556)
Q Consensus 398 --------~I~iwdl~~~~~--v~~l~~~h~~~~-V~~l~~sp~~~~i~s~s~~~~~~d-~~I~iwdi~g------~~i~ 459 (556)
.|..|.+.+... ...+.. ..... ...+..++++++++..+... .+ ..+.+.++.. ....
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~-~~~~~~~~~~~~s~d~~~l~i~~~~~--~~~s~v~~~d~~~~~~~~~~~~~ 271 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEE-PDEPFWFVSVSRSKDGRYLFISSSSG--TSESEVYLLDLDDGGSPDAKPKL 271 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC--TTCTTSEEEEEE-TTSSEEEEEEESS--SSEEEEEEEECCCTTTSS-SEEE
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEee-cCCCcEEEEEEecCcccEEEEEEEcc--ccCCeEEEEeccccCCCcCCcEE
Confidence 377888876532 234444 20233 56888999999988776543 33 6788888863 2333
Q ss_pred EeecCCCeEE-EEEeeCCCCCcceEEEEEe---CCCeEEEEeCCCCeE---EEEecCCCCC--CeEEEEEecCCCEEEEE
Q psy10778 460 SLASELRITS-VTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYKLAH---LLTLNTNVAL--PVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 460 ~~~~~~~i~~-i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~~~~---~~~~~~~h~~--~V~~l~~s~dg~~l~sg 530 (556)
.......+.. +... .+ .+++... .++.|.-.++..... ...+. .+.. .+..+.... +.+++..
T Consensus 272 l~~~~~~~~~~v~~~---~~---~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~-~~~~~~~l~~~~~~~-~~Lvl~~ 343 (414)
T PF02897_consen 272 LSPREDGVEYYVDHH---GD---RLYILTNDDAPNGRLVAVDLADPSPAEWWTVLI-PEDEDVSLEDVSLFK-DYLVLSY 343 (414)
T ss_dssp EEESSSS-EEEEEEE---TT---EEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE---SSSEEEEEEEEET-TEEEEEE
T ss_pred EeCCCCceEEEEEcc---CC---EEEEeeCCCCCCcEEEEecccccccccceeEEc-CCCCceeEEEEEEEC-CEEEEEE
Confidence 3333334433 3333 23 3444433 346777777766542 22333 3444 455555442 2344445
Q ss_pred cCCC--cEEEEEcC
Q psy10778 531 NTEG--LVIIWESS 542 (556)
Q Consensus 531 s~Dg--~V~vwdl~ 542 (556)
..++ .|+++++.
T Consensus 344 ~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 344 RENGSSRLRVYDLD 357 (414)
T ss_dssp EETTEEEEEEEETT
T ss_pred EECCccEEEEEECC
Confidence 5554 67888888
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=95.87 E-value=1.8 Score=43.62 Aligned_cols=197 Identities=9% Similarity=0.061 Sum_probs=109.5
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+.-.+|.|.|++.++....+.. .+ +.. .-|. .+.+.+-+.||.+.-..++... +.. .+....+..-.+++
T Consensus 115 TPa~SVtVVDl~~~kvv~ei~~--PG-C~~--iyP~~~~~F~~lC~DGsl~~v~Ld~~G---k~~-~~~t~~F~~~~dp~ 185 (342)
T PF06433_consen 115 TPATSVTVVDLAAKKVVGEIDT--PG-CWL--IYPSGNRGFSMLCGDGSLLTVTLDADG---KEA-QKSTKVFDPDDDPL 185 (342)
T ss_dssp SSSEEEEEEETTTTEEEEEEEG--TS-EEE--EEEEETTEEEEEETTSCEEEEEETSTS---SEE-EEEEEESSTTTS-B
T ss_pred CCCCeEEEEECCCCceeeeecC--CC-EEE--EEecCCCceEEEecCCceEEEEECCCC---CEe-EeeccccCCCCccc
Confidence 4445666677776666555542 12 111 2222 2457788889999888887542 111 01112222222333
Q ss_pred E-EEEEccCCCEEEEEcCCCcEEEEeCCCCeE--EEEeCCC------C--CCCCeeEEEEeCCCCeEEEEeecC---cCC
Q psy10778 379 T-DLYLCAGFSVAVSSSEDGTCLLWDINTIGY--IREIPCV------D--PNTPVSHVTMSETNGEIASVLQTT---KTG 444 (556)
Q Consensus 379 ~-~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~--v~~l~~~------h--~~~~V~~l~~sp~~~~i~s~s~~~---~~~ 444 (556)
. .-++...+..++--+-+|.|+--|+..... ...+... . ..+.-..+++++..+.|.+.-..+ ..+
T Consensus 186 f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHK 265 (342)
T PF06433_consen 186 FEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHK 265 (342)
T ss_dssp -S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TT
T ss_pred ccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCcc
Confidence 2 233444455566677888888888775432 2222210 0 013455688888777666554322 113
Q ss_pred C--CeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCCeEEEEecC
Q psy10778 445 G--SILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 445 d--~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
+ ..|-++|+. ++.+..+..+..+.+|+.+ .+.. .+|++ ...++.+.+||..+|+.++++..
T Consensus 266 dpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vs--qd~~--P~L~~~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 266 DPGTEVWVYDLKTHKRVARIPLEHPIDSIAVS--QDDK--PLLYALSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp S-EEEEEEEETTTTEEEEEEEEEEEESEEEEE--SSSS---EEEEEETTTTEEEEEETTT--EEEEE--
T ss_pred CCceEEEEEECCCCeEEEEEeCCCccceEEEc--cCCC--cEEEEEcCCCCeEEEEeCcCCcEEeehhc
Confidence 3 346666775 8888888877788899999 4442 46654 45689999999999999999974
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >KOG2395|consensus | Back alignment and domain information |
|---|
Probab=95.83 E-value=0.13 Score=53.59 Aligned_cols=140 Identities=11% Similarity=0.079 Sum_probs=97.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC-------EEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH-------TLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~-------~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
++..|.....++--|++.|+.+..+.. |.+ |+-+.+.|+.+ .-+.|-.|..|.-||.+..... .
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~-~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~-------k 418 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKF-EDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKN-------K 418 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeec-cCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcc-------e
Confidence 566777778888889999998888874 333 77777777643 2345667888888998754210 1
Q ss_pred CeEeeCC----CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 368 PTILLGH----SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h----~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+....+| .....|.+-..+| +||.||.+|.|++||- .+..-. .+++ - ..+|..|..+.+|++|++.|
T Consensus 419 l~~~q~kqy~~k~nFsc~aTT~sG-~IvvgS~~GdIRLYdr-i~~~AKTAlPg-L-G~~I~hVdvtadGKwil~Tc---- 490 (644)
T KOG2395|consen 419 LAVVQSKQYSTKNNFSCFATTESG-YIVVGSLKGDIRLYDR-IGRRAKTALPG-L-GDAIKHVDVTADGKWILATC---- 490 (644)
T ss_pred eeeeeccccccccccceeeecCCc-eEEEeecCCcEEeehh-hhhhhhhcccc-c-CCceeeEEeeccCcEEEEec----
Confidence 1222233 2334565555444 7999999999999996 444333 4555 5 78999999999999999886
Q ss_pred CCCCeEEEEEe
Q psy10778 443 TGGSILRLHTI 453 (556)
Q Consensus 443 ~~d~~I~iwdi 453 (556)
+..+.+.++
T Consensus 491 --~tyLlLi~t 499 (644)
T KOG2395|consen 491 --KTYLLLIDT 499 (644)
T ss_pred --ccEEEEEEE
Confidence 678888876
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.76 E-value=1.8 Score=48.91 Aligned_cols=209 Identities=12% Similarity=0.066 Sum_probs=124.1
Q ss_pred eEEEEeCCCCCCcceEcCCCC---CceEEEEEcCC-CCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCe
Q psy10778 304 LIRLKMSKELPATPVIRPPLG---ATIATATTAPD-CHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~---~~V~~i~~s~d-g~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.++++|-++-+.....+.... -+|.++.|..| +.++++|. ..|.|.|+.+... ..++
T Consensus 751 ~l~vlD~nTf~vl~~hef~~~E~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~---------~~L~ 821 (1096)
T KOG1897|consen 751 FLRVLDQNTFEVLSSHEFERNETALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEEL---------NSLE 821 (1096)
T ss_pred EEEEecCCceeEEeeccccccceeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecC---------Ccee
Confidence 356666655444433333222 24555567777 67888875 3478888887752 1112
Q ss_pred EeeCC--CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 370 ILLGH--SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 370 ~l~~h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
....+ .+.+.++..- +|+++|. -...|+++++.+.+.++.-.. + ..++..+.+.-.+..|++|. --+.
T Consensus 822 ~v~e~~v~Gav~aL~~f-ngkllA~--In~~vrLye~t~~~eLr~e~~-~-~~~~~aL~l~v~gdeI~VgD-----lm~S 891 (1096)
T KOG1897|consen 822 LVAETVVKGAVYALVEF-NGKLLAG--INQSVRLYEWTTERELRIECN-I-SNPIIALDLQVKGDEIAVGD-----LMRS 891 (1096)
T ss_pred eeeeeeeccceeehhhh-CCeEEEe--cCcEEEEEEccccceehhhhc-c-cCCeEEEEEEecCcEEEEee-----ccce
Confidence 22222 2344444322 4555554 356899999998877776666 6 68899999998999999987 6677
Q ss_pred EEEEEeC---CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------------------CeE
Q psy10778 448 LRLHTIN---AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------------------LAH 503 (556)
Q Consensus 448 I~iwdi~---g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------------------~~~ 503 (556)
+.+...+ |.....- -+..+.+++.+- .+ ..++.+..+|.+.+....+ |+.
T Consensus 892 itll~y~~~eg~f~evArD~~p~Wmtaveil--~~----d~ylgae~~gNlf~v~~d~~~~td~eR~~l~~~~~~hlGel 965 (1096)
T KOG1897|consen 892 ITLLQYKGDEGNFEEVARDYNPNWMTAVEIL--DD----DTYLGAENSGNLFTVRKDSDATTDEERQILEEVGKFHLGEL 965 (1096)
T ss_pred EEEEEEeccCCceEEeehhhCccceeeEEEe--cC----ceEEeecccccEEEEEecCCCCchhhhhcccceeeEEeccc
Confidence 7766554 3333222 256788888887 33 4566666677776654321 223
Q ss_pred EEEecCCCCCCeEE--EEEecCCCEEEEEcCCCcEEEE
Q psy10778 504 LLTLNTNVALPVIA--VTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 504 ~~~~~~~h~~~V~~--l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
+..+. |..-|.. -..+|-+..++.|+.+|.|-+.
T Consensus 966 vn~f~--hg~lv~~~~~s~~~~~~~vlfgTv~GsIG~i 1001 (1096)
T KOG1897|consen 966 VNKFR--HGSLVMQLGDSMIPLEPKVLFGTVNGSIGII 1001 (1096)
T ss_pred eeeee--ecceEeeccccccCCCCcEEEEEccceEEEE
Confidence 33333 3333444 1334545568888999988543
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=95.75 E-value=0.45 Score=49.61 Aligned_cols=142 Identities=14% Similarity=0.148 Sum_probs=92.7
Q ss_pred CCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC--------CCeEEEEeecCcCCCCeEEEEEeC--
Q psy10778 386 GFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET--------NGEIASVLQTTKTGGSILRLHTIN-- 454 (556)
Q Consensus 386 ~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~--------~~~i~s~s~~~~~~d~~I~iwdi~-- 454 (556)
+.++| ..|.....++--|+..|+.+..+.. | ..+ .+.+.|+ .+.|+-.+ +..|.-.|.+
T Consensus 478 dssli~~dg~~~~kLykmDIErGkvveeW~~-~--ddv-vVqy~p~~kf~qmt~eqtlvGlS------~~svFrIDPR~~ 547 (776)
T COG5167 478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDL-K--DDV-VVQYNPYFKFQQMTDEQTLVGLS------DYSVFRIDPRAR 547 (776)
T ss_pred CcceEEecCCCcccceeeecccceeeeEeec-C--Ccc-eeecCCchhHHhcCccceEEeec------ccceEEeccccc
Confidence 34443 4466667788889999999999988 5 344 6777774 23455443 4555555654
Q ss_pred CcEEEEeecCCCeEEEEEee---CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 455 AQLITSLASELRITSVTFSN---APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 455 g~~i~~~~~~~~i~~i~~s~---~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
|..+.........+.-.|+. ...| ++++|+..|.|++||.-..+--..+. +....|..+..+.+|+++++.+
T Consensus 548 gNKi~v~esKdY~tKn~Fss~~tTesG----yIa~as~kGDirLyDRig~rAKtalP-~lG~aIk~idvta~Gk~ilaTC 622 (776)
T COG5167 548 GNKIKVVESKDYKTKNKFSSGMTTESG----YIAAASRKGDIRLYDRIGKRAKTALP-GLGDAIKHIDVTANGKHILATC 622 (776)
T ss_pred CCceeeeeehhccccccccccccccCc----eEEEecCCCceeeehhhcchhhhcCc-ccccceeeeEeecCCcEEEEee
Confidence 65554444333333333331 0344 99999999999999963333333343 6678899999999999988766
Q ss_pred CCCcEEEEEcCC
Q psy10778 532 TEGLVIIWESSS 543 (556)
Q Consensus 532 ~Dg~V~vwdl~~ 543 (556)
...+.+-|++-
T Consensus 623 -k~yllL~d~~i 633 (776)
T COG5167 623 -KNYLLLTDVPI 633 (776)
T ss_pred -cceEEEEeccc
Confidence 44677777755
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=95.74 E-value=0.8 Score=50.34 Aligned_cols=221 Identities=7% Similarity=-0.054 Sum_probs=104.5
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC------CcEEEEEeeeccCcccccccCCCeEeeCCCcc
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS------GNILVYEYELNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D------g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
.+..||..+++....-.......-.+++. -++...+.||.+ ..+..||...+.. ..+..+......
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~~~~~a~-l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W-------~~~~~m~~~R~~ 344 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHIINYASAI-VDNEIIIAGGYNFNNPSLNKVYKINIENKIH-------VELPPMIKNRCR 344 (557)
T ss_pred CEEEEeCCCCeEEECCCCCccccceEEEE-ECCEEEEEcCCCCCCCccceEEEEECCCCeE-------eeCCCCcchhhc
Confidence 46677877664332211111111112222 356778888754 2356666554311 111111111111
Q ss_pred EEEEEEccCCCEEEEEcCCC-----cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC---------
Q psy10778 378 VTDLYLCAGFSVAVSSSEDG-----TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT--------- 443 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs~Dg-----~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~--------- 443 (556)
... ..-++++.+.|+.++ ++..||..+.+....-..+.+......++ -++...+.|+.....
T Consensus 345 ~~~--~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~--~~g~IYviGG~~~~~~~~~~~~~~ 420 (557)
T PHA02713 345 FSL--AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCV--LDQYIYIIGGRTEHIDYTSVHHMN 420 (557)
T ss_pred eeE--EEECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEEE--ECCEEEEEeCCCcccccccccccc
Confidence 112 223577778887654 47889988765433111101011122222 245666666532100
Q ss_pred ---------CCCeEEEEEeCCcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEeCC------CeEEEEeCCC-Ce--
Q psy10778 444 ---------GGSILRLHTINAQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGHSD------GTIQLWSGYK-LA-- 502 (556)
Q Consensus 444 ---------~d~~I~iwdi~g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~~d------g~I~iwd~~~-~~-- 502 (556)
.-..+..||.....-... .....-.+++.. ++ ++.+.|+.+ ..+..||..+ .+
T Consensus 421 ~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~---~~---~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~ 494 (557)
T PHA02713 421 SIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSH---KD---DIYVVCDIKDEKNVKTCIFRYNTNTYNGWE 494 (557)
T ss_pred cccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEE---CC---EEEEEeCCCCCCccceeEEEecCCCCCCee
Confidence 013577788763322222 111111223332 45 677777754 2467888776 33
Q ss_pred EEEEecCCCCCCeEEEEEecCCCEEEEEcCCC--cEEEEEcCCCC
Q psy10778 503 HLLTLNTNVALPVIAVTYSCDSQHLYASNTEG--LVIIWESSSHN 545 (556)
Q Consensus 503 ~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg--~V~vwdl~~~~ 545 (556)
.+..+. ...... +++. -++++.++|+.+| .+-.||..+.+
T Consensus 495 ~~~~m~-~~r~~~-~~~~-~~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 495 LITTTE-SRLSAL-HTIL-HDNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred EccccC-cccccc-eeEE-ECCEEEEEeeecceeehhhcCccccc
Confidence 334343 111222 2222 2678888999888 77788887744
|
|
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=95.61 E-value=1.1 Score=46.75 Aligned_cols=41 Identities=7% Similarity=0.010 Sum_probs=34.3
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 512 ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 512 ~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
...+.+++.+|++++.++.+.=|+|.++|+.++..+...+.
T Consensus 307 ~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG 347 (415)
T PF14655_consen 307 KREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG 347 (415)
T ss_pred CceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc
Confidence 45588999999999998888889999999999777666554
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.60 E-value=1.3 Score=43.34 Aligned_cols=162 Identities=14% Similarity=0.175 Sum_probs=105.7
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
+.|-...|.++.|+|+.+.|.+......-.||=..+|+.+++++. ..-+..-.+.+..++.+.++-- +++.+.+
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL-~g~~DpE~Ieyig~n~fvi~dE-----R~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPL-TGFSDPETIEYIGGNQFVIVDE-----RDRALYL 154 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecc-cccCChhHeEEecCCEEEEEeh-----hcceEEE
Confidence 345556699999999999999988888888887778999999876 2134566788887665555544 7889999
Q ss_pred EEeC--CcEEE----Eee-----c-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EE-EEecCCC-----
Q psy10778 451 HTIN--AQLIT----SLA-----S-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HL-LTLNTNV----- 511 (556)
Q Consensus 451 wdi~--g~~i~----~~~-----~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~-~~~~~~h----- 511 (556)
+.++ +..+. .+. + +.....++|+ +.. +.|..+-+..=+.|+.+.... .+ ......+
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d--~~~---~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWD--PVD---HRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecC--CCC---ceEEEEEccCCcEEEEEecCCcccccccccCcccccc
Confidence 8886 22221 111 1 4567889999 666 567777776666666654222 11 0111011
Q ss_pred --CCCeEEEEEec-CCCEEEEEcCCCcEEEEEcCC
Q psy10778 512 --ALPVIAVTYSC-DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 512 --~~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
-..|.++.|.+ .+.+|+-+.+++.+.-.|+..
T Consensus 230 ~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 230 LFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred eEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 12356677775 345666666777777776654
|
|
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=95.49 E-value=2.9 Score=41.32 Aligned_cols=215 Identities=9% Similarity=0.026 Sum_probs=123.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-----CCccEEEEEEccCCC------------
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG-----HSACVTDLYLCAGFS------------ 388 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~l~~s~~~~------------ 388 (556)
.-..++++|.+.+-++....+...+||.....+.+... ..+-++.. .....+.+.|+....
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~--~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a 101 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQD--PLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPS 101 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCcc--ceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccce
Confidence 34678999988877777778899999987321111110 11222221 234567777764322
Q ss_pred EEEEEcCCCcEEEEeCCCCeE-----EEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeCCcEEEEe
Q psy10778 389 VAVSSSEDGTCLLWDINTIGY-----IREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTINAQLITSL 461 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~-----v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~ 461 (556)
.++.+++||+|.-|...-+.. ...+.......-.+.+++... +..|..+.- ..++|.+||-+-..+..-
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF----~~g~IDVFd~~f~~~~~~ 177 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANF----RQGRIDVFKGSFRPPPLP 177 (336)
T ss_pred eEEEEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEecc----CCCceEEecCccccccCC
Confidence 367788999999998532211 122221010223345666543 455555532 678999998764333211
Q ss_pred ---ec-----C---CCe------EEEEEee-CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEec
Q psy10778 462 ---AS-----E---LRI------TSVTFSN-APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSC 522 (556)
Q Consensus 462 ---~~-----~---~~i------~~i~~s~-~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~ 522 (556)
.. . -.| .-+.|.. ++++ +-=+.|..-|.|-++|+ .+++++++.. +.-...+.|+..|
T Consensus 178 g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~---~d~v~G~G~G~VdvFd~-~G~l~~r~as~g~LNaPWG~a~AP 253 (336)
T TIGR03118 178 GSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADR---NDEVAGAGLGYVNVFTL-NGQLLRRVASSGRLNAPWGLAIAP 253 (336)
T ss_pred CCccCCCCCCCCCCcceEEECCeEEEEEEecCCcc---cccccCCCcceEEEEcC-CCcEEEEeccCCcccCCceeeeCh
Confidence 00 0 011 1111211 0111 22233445578999997 7899998864 4456678888866
Q ss_pred ------CCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 523 ------DSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 523 ------dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
.+.+|+.-=.||+|..+|..+++-+-.+
T Consensus 254 a~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L 287 (336)
T TIGR03118 254 ESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQL 287 (336)
T ss_pred hhhCCCCCCeEEeecCCceeEEecCCCCceeeee
Confidence 4567776667999999999876644333
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG2444|consensus | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.038 Score=51.68 Aligned_cols=103 Identities=14% Similarity=0.061 Sum_probs=64.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEE-EEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATA-TTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i-~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
-+.+|..+|.|.+|.........-....-...|.++ .--.++.+..+++.||.|+.|++..+ +.+...-.
T Consensus 72 ~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~---------k~~g~~g~ 142 (238)
T KOG2444|consen 72 KLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPN---------KVLGYVGQ 142 (238)
T ss_pred eEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccC---------ceeeeecc
Confidence 678899999999998762211111111112233332 22234567889999999999998876 44445555
Q ss_pred CC-ccEEEEEEccCCCEEEEE--cCCCcEEEEeCCC
Q psy10778 374 HS-ACVTDLYLCAGFSVAVSS--SEDGTCLLWDINT 406 (556)
Q Consensus 374 h~-~~V~~l~~s~~~~~l~sg--s~Dg~I~iwdl~~ 406 (556)
|. .++.....+..++.++++ |.|..++.|++..
T Consensus 143 h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 143 HNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred ccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence 66 555555556566666666 6677777777654
|
|
| >KOG2079|consensus | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.039 Score=61.88 Aligned_cols=98 Identities=18% Similarity=0.268 Sum_probs=71.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++.|+..|.+-..|..+. +.+.... .-.++|++++|+.+|..++.|-.+|.|.+||+..+ +..+.+..
T Consensus 101 ~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~---------k~l~~i~e 170 (1206)
T KOG2079|consen 101 PIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRA---------KILKVITE 170 (1206)
T ss_pred eEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCC---------cceeeeee
Confidence 6778888888888776543 1111111 23579999999999999999999999999999876 56677777
Q ss_pred CCccEEEEE---EccCCCEEEEEcCCCcEEEEeC
Q psy10778 374 HSACVTDLY---LCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 374 h~~~V~~l~---~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
|..+++++- +..++..+.++...|. +|.+
T Consensus 171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 776665554 3446667888888886 5543
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.8 Score=44.67 Aligned_cols=195 Identities=8% Similarity=0.010 Sum_probs=109.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceE---E-------EEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIA---T-------ATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~---~-------i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.+..++.++.|+-.|.++++.+-.+...-...+. + +++ .+..++.++.|+.+.-.|..++.
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk------- 141 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGK------- 141 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCcccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCC-------
Confidence 4455566778888888888766554432111111 1 122 23467778889999888887762
Q ss_pred cCCCeEe--eCCC--ccEEEEEEccCCCEEEEEc------CCCcEEEEeCCCCeEEEEeCCCCCCC--------------
Q psy10778 365 CKPPTIL--LGHS--ACVTDLYLCAGFSVAVSSS------EDGTCLLWDINTIGYIREIPCVDPNT-------------- 420 (556)
Q Consensus 365 ~~~~~~l--~~h~--~~V~~l~~s~~~~~l~sgs------~Dg~I~iwdl~~~~~v~~l~~~h~~~-------------- 420 (556)
.+-.. ..+. ..+++--.-.++ .++.++ .+|.|.-+|.++|+.+-+..... ..
T Consensus 142 --~~W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p-~~~~~~~~~~~~~~~~ 217 (527)
T TIGR03075 142 --VVWSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVP-GDMGYLDKADKPVGGE 217 (527)
T ss_pred --EEeecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcC-CCcccccccccccccc
Confidence 11111 1111 111111111134 444443 26899999999998876543311 10
Q ss_pred ----------------Ce-eEEEEeCCCCeEEEEeecCcC-------C----CCeEEEEEeC-CcEEEEeec---C----
Q psy10778 421 ----------------PV-SHVTMSETNGEIASVLQTTKT-------G----GSILRLHTIN-AQLITSLAS---E---- 464 (556)
Q Consensus 421 ----------------~V-~~l~~sp~~~~i~s~s~~~~~-------~----d~~I~iwdi~-g~~i~~~~~---~---- 464 (556)
.+ ..+++.+..+.+..+..+... . ...|.-.|++ |+..-+++. .
T Consensus 218 ~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~ 297 (527)
T TIGR03075 218 PGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDY 297 (527)
T ss_pred cccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccc
Confidence 01 134777777777776633100 1 1256666776 888776642 1
Q ss_pred ---CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE
Q psy10778 465 ---LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL 504 (556)
Q Consensus 465 ---~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~ 504 (556)
....-+... .+|...+.++.+..+|.+++.|..+|+.+
T Consensus 298 d~~~~p~l~d~~--~~G~~~~~v~~~~K~G~~~vlDr~tG~~i 338 (527)
T TIGR03075 298 DGVNEMILFDLK--KDGKPRKLLAHADRNGFFYVLDRTNGKLL 338 (527)
T ss_pred cCCCCcEEEEec--cCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence 111122222 45644468899999999999999999986
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=95.13 E-value=0.062 Score=37.50 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=29.7
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY 409 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~ 409 (556)
...|.+++|||...++|.|+.+|.|.++.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 456999999999999999999999999998 4443
|
|
| >KOG1897|consensus | Back alignment and domain information |
|---|
Probab=95.03 E-value=5.1 Score=45.39 Aligned_cols=219 Identities=13% Similarity=0.085 Sum_probs=119.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCC------CEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDC------HTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg------~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
.++.++.++.+.......+.+....+..-...|.|+.++|-| +.+++|.++..+.+.-..... ... ....
T Consensus 501 qVvvA~~~~~l~y~~i~~~~l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~---~~~-~~~~ 576 (1096)
T KOG1897|consen 501 QVVVAGGGLALFYLEIEDGGLREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILTFLPDL---ILI-THEQ 576 (1096)
T ss_pred EEEEecCccEEEEEEeeccceeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEEECCCc---cee-eeec
Confidence 455556666666666665554444333445689999999742 378999888877665443220 000 0000
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEE--eCCCCeEE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLW--DINTIGYI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iw--dl~~~~~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
.....-...|.-..+-.+..+|.++..||.+.-+ |..+|..- ++... . ..++.--.|+..++.-+.++ .
T Consensus 577 l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~l-G-t~P~~Lr~f~sk~~t~vfa~-----s 649 (1096)
T KOG1897|consen 577 LSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTL-G-TQPISLRTFSSKSRTAVFAL-----S 649 (1096)
T ss_pred cCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcccccccc-C-CCCcEEEEEeeCCceEEEEe-----C
Confidence 0011112334445555567899999999998866 55555432 11111 1 56777777877665555455 5
Q ss_pred CCeEEEEEeCCcEEEEeecCCCeEEE-EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEe
Q psy10778 445 GSILRLHTINAQLITSLASELRITSV-TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 445 d~~I~iwdi~g~~i~~~~~~~~i~~i-~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s 521 (556)
|.-..+|.-+++++.+--.-..+..+ .|+. +... ..|+.+. .+.+++.-+...+ .++++. -....+.+++.
T Consensus 650 drP~viY~~n~kLv~spls~kev~~~c~f~s-~a~~--d~l~~~~-~~~l~i~tid~iqkl~irtvp--l~~~prrI~~q 723 (1096)
T KOG1897|consen 650 DRPTVIYSSNGKLVYSPLSLKEVNHMCPFNS-DAYP--DSLASAN-GGALTIGTIDEIQKLHIRTVP--LGESPRRICYQ 723 (1096)
T ss_pred CCCEEEEecCCcEEEeccchHHhhhhccccc-ccCC--ceEEEec-CCceEEEEecchhhcceeeec--CCCChhheEec
Confidence 77888898888877654222222222 2331 1111 2344444 3556666554433 244544 34566777777
Q ss_pred cCCCEEEEE
Q psy10778 522 CDSQHLYAS 530 (556)
Q Consensus 522 ~dg~~l~sg 530 (556)
+....+.+.
T Consensus 724 ~~sl~~~v~ 732 (1096)
T KOG1897|consen 724 ESSLTFGVL 732 (1096)
T ss_pred ccceEEEEE
Confidence 644444433
|
|
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.87 E-value=4.2 Score=39.73 Aligned_cols=149 Identities=15% Similarity=0.138 Sum_probs=89.5
Q ss_pred ceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe-
Q psy10778 326 TIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD- 403 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd- 403 (556)
.+.+.+++++++.++... .++.-.+|-...+. .....+.+ ..++.-.|++++...+....+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~--------~~~~~~~g--~~l~~PS~d~~g~~W~v~~~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGG--------PVRPVLTG--GSLTRPSWDPDGWVWTVDDGSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCC--------cceeeccC--CccccccccCCCCEEEEEcCCCceEEEEe
Confidence 688999999999877665 23333444443331 11122222 3778889999987777766666666663
Q ss_pred CCCCeEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC----C-c-EE----EEe-ecCCCeEEEE
Q psy10778 404 INTIGYI-REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN----A-Q-LI----TSL-ASELRITSVT 471 (556)
Q Consensus 404 l~~~~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~----g-~-~i----~~~-~~~~~i~~i~ 471 (556)
..+++.. ..+..+.....|+.+.+||||..++...... .++.|.+--+. | . .+ ... .....+..+.
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~--~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~ 172 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVSPDGTRVAVVVEDG--GGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVA 172 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEECCCCcEEEEEEecC--CCCeEEEEEEEeCCCCCcceeccceEecccccCcceeee
Confidence 3333322 2222201012899999999999998886432 35777777652 4 1 11 111 1246889999
Q ss_pred EeeCCCCCcceEEEEEeCCC
Q psy10778 472 FSNAPEGVSQNVIVTGHSDG 491 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg 491 (556)
|. +++ .+++.+...+
T Consensus 173 W~--~~~---~L~V~~~~~~ 187 (253)
T PF10647_consen 173 WS--DDS---TLVVLGRSAG 187 (253)
T ss_pred ec--CCC---EEEEEeCCCC
Confidence 99 777 6666655443
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.39 Score=54.57 Aligned_cols=140 Identities=19% Similarity=0.152 Sum_probs=92.5
Q ss_pred cEEEEEEccCCCE--EEEEcCCCcEEEEeCCCCeEEE-----------EeCCCCCCCCeeEEEEeCCCCe-EEEEeecCc
Q psy10778 377 CVTDLYLCAGFSV--AVSSSEDGTCLLWDINTIGYIR-----------EIPCVDPNTPVSHVTMSETNGE-IASVLQTTK 442 (556)
Q Consensus 377 ~V~~l~~s~~~~~--l~sgs~Dg~I~iwdl~~~~~v~-----------~l~~~h~~~~V~~l~~sp~~~~-i~s~s~~~~ 442 (556)
++..+...+|+.. ++..+.+-.|..+|+++...-+ +... . ..-..++.|+|.-.. .++..
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~e-k-~vf~~~~~wnP~vp~n~av~l---- 175 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFE-K-PVFQLKNVWNPLVPLNSAVDL---- 175 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhc-c-ccccccccccCCccchhhhhc----
Confidence 4555666677653 3444555578889998643221 1111 1 244567888886433 23333
Q ss_pred CCCCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCCeEE
Q psy10778 443 TGGSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NVALPVIA 517 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h~~~V~~ 517 (556)
.|+.|++..++ ...+..+......++++|+ |.| +.++.|..+|++.-|.. .++....+.. .....|.+
T Consensus 176 -~dlsl~V~~~~~~~~~v~s~p~t~~~Tav~WS--prG---KQl~iG~nnGt~vQy~P-~leik~~ip~Pp~~e~yrvl~ 248 (1405)
T KOG3630|consen 176 -SDLSLRVKSTKQLAQNVTSFPVTNSQTAVLWS--PRG---KQLFIGRNNGTEVQYEP-SLEIKSEIPEPPVEENYRVLS 248 (1405)
T ss_pred -cccchhhhhhhhhhhhhcccCcccceeeEEec--ccc---ceeeEecCCCeEEEeec-ccceeecccCCCcCCCcceeE
Confidence 68888888776 4445555667789999999 899 89999999999998875 5555555542 11477999
Q ss_pred EEEecCCCEEEE
Q psy10778 518 VTYSCDSQHLYA 529 (556)
Q Consensus 518 l~~s~dg~~l~s 529 (556)
|+|-....++++
T Consensus 249 v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 249 VTWLSTQEFLVV 260 (1405)
T ss_pred EEEecceeEEEE
Confidence 999887766664
|
|
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.60 E-value=4 Score=40.11 Aligned_cols=192 Identities=10% Similarity=0.101 Sum_probs=115.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe--eCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL--LGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
...|.++.|+|+.+.|++......-.|+=...+ ..++++ .+ -+.--.|.+..++.+.++--+++.+.+
T Consensus 85 ~~nvS~LTynp~~rtLFav~n~p~~iVElt~~G---------dlirtiPL~g-~~DpE~Ieyig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 85 TANVSSLTYNPDTRTLFAVTNKPAAIVELTKEG---------DLIRTIPLTG-FSDPETIEYIGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccceeeCCCcceEEEecCCCceEEEEecCC---------ceEEEecccc-cCChhHeEEecCCEEEEEehhcceEEE
Confidence 345999999999999988887777666654444 222332 22 222345677777777777777888888
Q ss_pred EeCCCCeEEE-----E--eCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE--EE-Ee-e-c-----
Q psy10778 402 WDINTIGYIR-----E--IPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL--IT-SL-A-S----- 463 (556)
Q Consensus 402 wdl~~~~~v~-----~--l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~--i~-~~-~-~----- 463 (556)
..+.....+. . +.. .+.+...-.++|+|..+.+..+- +..-+.||.+++.. +. .. . .
T Consensus 155 ~~vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-----Er~P~~I~~~~~~~~~l~~~~~~~~~~~~~ 229 (316)
T COG3204 155 FTVDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAK-----ERNPIGIFEVTQSPSSLSVHASLDPTADRD 229 (316)
T ss_pred EEEcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEE-----ccCCcEEEEEecCCcccccccccCcccccc
Confidence 8766542221 1 111 01045677899999999888886 67778888776322 11 11 1 1
Q ss_pred --CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--C-C--C---CCeEEEEEecCCCEEEEEcCC
Q psy10778 464 --ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--N-V--A---LPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 464 --~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~-h--~---~~V~~l~~s~dg~~l~sgs~D 533 (556)
-..+.++.|.+ +.+ .+|+.+.+++.+.-.|. .|..+..+.. + | . ...-.+++.++|.+ +..|+-
T Consensus 230 ~f~~DvSgl~~~~-~~~---~LLVLS~ESr~l~Evd~-~G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~l-YIvSEP 303 (316)
T COG3204 230 LFVLDVSGLEFNA-ITN---SLLVLSDESRRLLEVDL-SGEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNL-YIVSEP 303 (316)
T ss_pred eEeeccccceecC-CCC---cEEEEecCCceEEEEec-CCCeeeeEEeccCCCCCcccCCCcceeEECCCCCE-EEEecC
Confidence 13456677774 344 68888888888888886 4554444432 1 1 1 12345666666543 333444
Q ss_pred CcE
Q psy10778 534 GLV 536 (556)
Q Consensus 534 g~V 536 (556)
+..
T Consensus 304 nlf 306 (316)
T COG3204 304 NLF 306 (316)
T ss_pred Ccc
Confidence 333
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=94.53 E-value=0.12 Score=36.10 Aligned_cols=36 Identities=17% Similarity=0.399 Sum_probs=30.7
Q ss_pred ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 462 ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 462 ~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
.....|.+++|+ |.. .+||.|+.+|.|.++.+ +++.
T Consensus 9 ~l~~~v~~~~w~--P~m---dLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 9 NLPSRVSCMSWC--PTM---DLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCCCcEEEEEEC--CCC---CEEEEEECCCeEEEEEC-CCcC
Confidence 345679999999 888 89999999999999998 5554
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.48 E-value=2.1 Score=47.09 Aligned_cols=115 Identities=14% Similarity=0.135 Sum_probs=77.1
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE--EeCCCCCCCCeeEEEEe--CCCCeEEEEeecCcCCCC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR--EIPCVDPNTPVSHVTMS--ETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~--~l~~~h~~~~V~~l~~s--p~~~~i~s~s~~~~~~d~ 446 (556)
+.......+-+.-|.-++..+.-+....+.|||.+.+.... .+.. ...|..+.|. |++..|++.+ -.+
T Consensus 25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~---~~~I~dLDWtst~d~qsiLaVG-----f~~ 96 (631)
T PF12234_consen 25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSE---DDPIRDLDWTSTPDGQSILAVG-----FPH 96 (631)
T ss_pred EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecC---CCceeeceeeecCCCCEEEEEE-----cCc
Confidence 33334445555556656655555566789999999876443 4443 6889999986 6788888888 789
Q ss_pred eEEEEEe------C-C---cEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 447 ILRLHTI------N-A---QLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 447 ~I~iwdi------~-g---~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
.|.+|.- + + ..+..+. ...+|.+.+|. ++| .+++|+ +..+.|+|-+-
T Consensus 97 ~v~l~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl--~~G----~LvV~s-GNqlfv~dk~~ 157 (631)
T PF12234_consen 97 HVLLYTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWL--KDG----TLVVGS-GNQLFVFDKWL 157 (631)
T ss_pred EEEEEEccchhhhcCCcccceeEEEEeecCCCCCccceeEe--cCC----eEEEEe-CCEEEEECCCc
Confidence 9999864 1 1 2333332 24688999999 888 555555 35788887543
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.40 E-value=7.1 Score=40.22 Aligned_cols=219 Identities=12% Similarity=0.004 Sum_probs=103.2
Q ss_pred eEEeccCCC--eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDN--LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg--~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|..+..|| .+.+.|+++++..++........ -...++++++.++-...+..|+-.|+.+. +......
T Consensus 50 llF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~-~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~---------e~~~vy~ 119 (386)
T PF14583_consen 50 LLFASDFDGNRNLYLLDLATGEITQLTDGPGDNT-FGGFLSPDDRALYYVKNGRSLRRVDLDTL---------EERVVYE 119 (386)
T ss_dssp EEEEE-TTSS-EEEEEETTT-EEEE---SS-B-T-TT-EE-TTSSEEEEEETTTEEEEEETTT-----------EEEEEE
T ss_pred EEEEeccCCCcceEEEEcccCEEEECccCCCCCc-cceEEecCCCeEEEEECCCeEEEEECCcC---------cEEEEEE
Confidence 555555555 45666788887766655322212 13445687788766555566766666654 2122333
Q ss_pred CCCccEEEEEE--ccCCCEEEEEc---C-------------------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe
Q psy10778 373 GHSACVTDLYL--CAGFSVAVSSS---E-------------------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428 (556)
Q Consensus 373 ~h~~~V~~l~~--s~~~~~l~sgs---~-------------------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s 428 (556)
.....+-...| +.++..++-.- . .+.|.--|+.+|+.-..+.. ...+..+.++
T Consensus 120 ~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~---~~wlgH~~fs 196 (386)
T PF14583_consen 120 VPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFED---TDWLGHVQFS 196 (386)
T ss_dssp --TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEE---SS-EEEEEEE
T ss_pred CCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEec---CccccCcccC
Confidence 34444433444 34555543321 1 12356668888876666655 6788999999
Q ss_pred CCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEee-c--CCCeEEEEEeeCCCCCcceEEEEEe----CCCeEEEEeCC
Q psy10778 429 ETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLA-S--ELRITSVTFSNAPEGVSQNVIVTGH----SDGTIQLWSGY 499 (556)
Q Consensus 429 p~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~-~--~~~i~~i~~s~~pdg~~~~~l~tg~----~dg~I~iwd~~ 499 (556)
|....++.-|..+....=.-+||-++ |.....+. + ...+..=-|. ++|. .+...+. .+..|.-+|..
T Consensus 197 P~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~--~DG~--~i~y~~~~~~~~~~~i~~~d~~ 272 (386)
T PF14583_consen 197 PTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWV--PDGS--TIWYDSYTPGGQDFWIAGYDPD 272 (386)
T ss_dssp TTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE---TTSS---EEEEEEETTT--EEEEEE-TT
T ss_pred CCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCccccccccc--CCCC--EEEEEeecCCCCceEEEeeCCC
Confidence 98777777765443111123667664 65544442 1 2334444577 7883 2222222 23356667887
Q ss_pred CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 500 KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 500 ~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
+++...... ..+....-.++||++++.-+.|
T Consensus 273 t~~~~~~~~---~p~~~H~~ss~Dg~L~vGDG~d 303 (386)
T PF14583_consen 273 TGERRRLME---MPWCSHFMSSPDGKLFVGDGGD 303 (386)
T ss_dssp T--EEEEEE---E-SEEEEEE-TTSSEEEEEE--
T ss_pred CCCceEEEe---CCceeeeEEcCCCCEEEecCCC
Confidence 776543332 1234566667899888754444
|
|
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=94.22 E-value=13 Score=42.51 Aligned_cols=203 Identities=11% Similarity=0.055 Sum_probs=109.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC-------ceEEEEEc----------------CCCCEEEEEeCCCcEEEE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA-------TIATATTA----------------PDCHTLWLGLTSGNILVY 351 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~-------~V~~i~~s----------------~dg~~l~tgs~Dg~I~vw 351 (556)
.+-.++.++.|.-.|..+++.+-.+...... ..+.+++. ..+..++.++.|+.+.-.
T Consensus 196 ~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~LiAL 275 (764)
T TIGR03074 196 TLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLIAL 275 (764)
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEEEE
Confidence 3444556777777777777655544321110 01122221 123478888889998888
Q ss_pred EeeeccCcccccccCCCeEeeCCCccE-------------EEEEEcc--CCCEEEEEcC----------CCcEEEEeCCC
Q psy10778 352 EYELNASTNKIEFCKPPTILLGHSACV-------------TDLYLCA--GFSVAVSSSE----------DGTCLLWDINT 406 (556)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~l~~h~~~V-------------~~l~~s~--~~~~l~sgs~----------Dg~I~iwdl~~ 406 (556)
|..++. ....+ +..+.| ..+.-.| .+..++.|+. +|.|+-+|.++
T Consensus 276 DA~TGk---------~~W~f-g~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~T 345 (764)
T TIGR03074 276 DADTGK---------LCEDF-GNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNT 345 (764)
T ss_pred ECCCCC---------EEEEe-cCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCC
Confidence 877762 11111 111110 0111111 1335555542 68899999999
Q ss_pred CeEEEEeCCCCC---------------CCCe-eEEEEeCCCCeEEEEeecCc-------------CCCCeEEEEEeC-Cc
Q psy10778 407 IGYIREIPCVDP---------------NTPV-SHVTMSETNGEIASVLQTTK-------------TGGSILRLHTIN-AQ 456 (556)
Q Consensus 407 ~~~v~~l~~~h~---------------~~~V-~~l~~sp~~~~i~s~s~~~~-------------~~d~~I~iwdi~-g~ 456 (556)
|+.+-.+....+ ...+ ..++++++.+.+.....+.. ...+.|.-.|.+ |+
T Consensus 346 Gkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD~~TGk 425 (764)
T TIGR03074 346 GALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALDATTGK 425 (764)
T ss_pred CcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEeCCCCc
Confidence 998866542000 0011 34566666666655432110 123456666765 77
Q ss_pred EEEEeec-C---------CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 457 LITSLAS-E---------LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 457 ~i~~~~~-~---------~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
..-+++. . ....-+.+. ..+|.....++.++.+|.+.+.|..+|+.+....
T Consensus 426 ~~W~~Q~~~hD~WD~D~~~~p~L~d~~-~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~ 486 (764)
T TIGR03074 426 ERWVFQTVHHDLWDMDVPAQPSLVDLP-DADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVE 486 (764)
T ss_pred eEEEecccCCccccccccCCceEEeee-cCCCcEeeEEEEECCCCEEEEEECCCCCEEeece
Confidence 7766642 1 111112222 1255334589999999999999999999887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation | Back alignment and domain information |
|---|
Probab=94.21 E-value=3.1 Score=40.65 Aligned_cols=144 Identities=16% Similarity=0.082 Sum_probs=85.0
Q ss_pred cEEEEEEccCCCEEEEEc---CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE-
Q psy10778 377 CVTDLYLCAGFSVAVSSS---EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT- 452 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs---~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd- 452 (556)
.+...+++++++.++... ....+.++. .+.....+.. ...+....|++++...+... .+...+++.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~--~~~~~~~~~~---g~~l~~PS~d~~g~~W~v~~-----~~~~~~~~~~ 94 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGP--AGGPVRPVLT---GGSLTRPSWDPDGWVWTVDD-----GSGGVRVVRD 94 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEc--CCCcceeecc---CCccccccccCCCCEEEEEc-----CCCceEEEEe
Confidence 688999999998776655 233444554 3333333323 35788889999966555544 455555553
Q ss_pred -eCCcEEE-Eee--c-CCCeEEEEEeeCCCCCcceEEEE--EeCCCeEEEEeCC---CC------eEEEEecCCCCCCeE
Q psy10778 453 -INAQLIT-SLA--S-ELRITSVTFSNAPEGVSQNVIVT--GHSDGTIQLWSGY---KL------AHLLTLNTNVALPVI 516 (556)
Q Consensus 453 -i~g~~i~-~~~--~-~~~i~~i~~s~~pdg~~~~~l~t--g~~dg~I~iwd~~---~~------~~~~~~~~~h~~~V~ 516 (556)
..+.... ... . ...|..+.+| |||. ++.+. ...++.|.+--+. .+ ....... .....++
T Consensus 95 ~~~g~~~~~~v~~~~~~~~I~~l~vS--pDG~--RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~-~~~~~v~ 169 (253)
T PF10647_consen 95 SASGTGEPVEVDWPGLRGRITALRVS--PDGT--RVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAP-PLLSDVT 169 (253)
T ss_pred cCCCcceeEEecccccCCceEEEEEC--CCCc--EEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecc-cccCcce
Confidence 2333221 111 1 2289999999 9994 33333 2345777766432 23 1111111 2346899
Q ss_pred EEEEecCCCEEEEEcCCCc
Q psy10778 517 AVTYSCDSQHLYASNTEGL 535 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~Dg~ 535 (556)
+++|.+++.+++.+...+.
T Consensus 170 ~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 170 DVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred eeeecCCCEEEEEeCCCCC
Confidence 9999999988887765544
|
It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues. |
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=94.17 E-value=1.8 Score=47.66 Aligned_cols=191 Identities=8% Similarity=-0.050 Sum_probs=90.4
Q ss_pred eEEeccCC------CeEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcccc
Q psy10778 295 MICWNECD------NLIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~D------g~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~ 362 (556)
+.+.|+.+ ..+..||..++.....-... ..... ++ ..-+|+..+.||.++ ++..||..++...
T Consensus 306 IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~-~~-~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~--- 380 (557)
T PHA02713 306 IIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRF-SL-AVIDDTIYAIGGQNGTNVERTIECYTMGDDKWK--- 380 (557)
T ss_pred EEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhce-eE-EEECCEEEEECCcCCCCCCceEEEEECCCCeEE---
Confidence 56666643 34677887765432211111 11111 22 223678888888764 3777887654211
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC-----------------------cEEEEeCCCCeEEEEeCCCCCC
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG-----------------------TCLLWDINTIGYIREIPCVDPN 419 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-----------------------~I~iwdl~~~~~v~~l~~~h~~ 419 (556)
.+..+.........+ .-++.+.+.|+.++ ++..||..+.+....-.. . .
T Consensus 381 ----~~~~mp~~r~~~~~~--~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m-~-~ 452 (557)
T PHA02713 381 ----MLPDMPIALSSYGMC--VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF-W-T 452 (557)
T ss_pred ----ECCCCCcccccccEE--EECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCC-C-c
Confidence 111111111111112 22577777777553 477788877654322111 1 1
Q ss_pred CCeeEEEEeCCCCeEEEEeecCcC-CCCeEEEEEeCC-cE---EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC--e
Q psy10778 420 TPVSHVTMSETNGEIASVLQTTKT-GGSILRLHTINA-QL---ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG--T 492 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~~~-~d~~I~iwdi~g-~~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg--~ 492 (556)
.....-+..-++...+.|+..+.. ....+..||... .. +..+.......+++.. +| ++.++|+.+| .
T Consensus 453 ~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~---~~---~iyv~Gg~~~~~~ 526 (557)
T PHA02713 453 GTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH---DN---TIMMLHCYESYML 526 (557)
T ss_pred ccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE---CC---EEEEEeeecceee
Confidence 111111122234555555521100 113467788764 22 2222222223333333 45 7889999888 6
Q ss_pred EEEEeCCCCeEE
Q psy10778 493 IQLWSGYKLAHL 504 (556)
Q Consensus 493 I~iwd~~~~~~~ 504 (556)
+..||..+.+-.
T Consensus 527 ~e~yd~~~~~W~ 538 (557)
T PHA02713 527 QDTFNVYTYEWN 538 (557)
T ss_pred hhhcCccccccc
Confidence 777777665543
|
|
| >PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length | Back alignment and domain information |
|---|
Probab=94.15 E-value=1.4 Score=48.37 Aligned_cols=112 Identities=15% Similarity=0.197 Sum_probs=72.9
Q ss_pred CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-cEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 420 TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-QLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
..++.+.-+.-+ .++.... ....+.|||.++ .+-.+. ...+.|..+.|...|+| +.+++-+-.+.|.+|
T Consensus 30 ~~~~li~gss~~-k~a~V~~----~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~---qsiLaVGf~~~v~l~ 101 (631)
T PF12234_consen 30 SNPSLISGSSIK-KIAVVDS----SRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG---QSILAVGFPHHVLLY 101 (631)
T ss_pred CCcceEeecccC-cEEEEEC----CCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC---CEEEEEEcCcEEEEE
Confidence 445556566543 4444432 567899999984 433222 34789999999988888 566665667788887
Q ss_pred eC---------CCCeEEEEecC-CCC-CCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 497 SG---------YKLAHLLTLNT-NVA-LPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 497 d~---------~~~~~~~~~~~-~h~-~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
.- .+...++.+.. .++ .+|.+..|.++|.+++++ +..+.|++-
T Consensus 102 ~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s--GNqlfv~dk 155 (631)
T PF12234_consen 102 TQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS--GNQLFVFDK 155 (631)
T ss_pred EccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEe--CCEEEEECC
Confidence 43 12334555433 333 689999999999766644 456777764
|
This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=94.06 E-value=8.8 Score=40.05 Aligned_cols=219 Identities=14% Similarity=0.088 Sum_probs=100.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC--C----CC----CceEEEEEcCCCCEEEEEe--CC----CcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP--P----LG----ATIATATTAPDCHTLWLGL--TS----GNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~--~----h~----~~V~~i~~s~dg~~l~tgs--~D----g~I~vwd~~~~~~ 358 (556)
+++=|-.++.|.+.|+.+.+..+.+.. . +. ..-..+-.-|+|+.++++- .+ |-+.+.|-++-
T Consensus 90 Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~llD~~tf-- 167 (461)
T PF05694_consen 90 LILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLLDGETF-- 167 (461)
T ss_dssp EEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE-TTT---
T ss_pred EEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEEcCccc--
Confidence 555666889999999986544333221 0 10 1122233447888888863 22 34555554422
Q ss_pred cccccccCCCeEeeC---CCccEEEEEEccCCCEEEEEcC--------------------CCcEEEEeCCCCeEEEEeCC
Q psy10778 359 TNKIEFCKPPTILLG---HSACVTDLYLCAGFSVAVSSSE--------------------DGTCLLWDINTIGYIREIPC 415 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~---h~~~V~~l~~s~~~~~l~sgs~--------------------Dg~I~iwdl~~~~~v~~l~~ 415 (556)
+....... ...--..+.|.|..+.++|... ..++.+||+.+.+.++++..
T Consensus 168 -------~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idL 240 (461)
T PF05694_consen 168 -------EVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDL 240 (461)
T ss_dssp --------EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES
T ss_pred -------cccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEec
Confidence 11111111 1223456778888888888653 25799999999999999876
Q ss_pred CCCC-CCeeEEEEeC--CCCeEEEEeecCcCCCCeEEEEEe--CCc----EEEEee---c---------------CCCeE
Q psy10778 416 VDPN-TPVSHVTMSE--TNGEIASVLQTTKTGGSILRLHTI--NAQ----LITSLA---S---------------ELRIT 468 (556)
Q Consensus 416 ~h~~-~~V~~l~~sp--~~~~i~s~s~~~~~~d~~I~iwdi--~g~----~i~~~~---~---------------~~~i~ 468 (556)
... ..+..|.|.. +..+=++++. -.++|..|-- +|+ .+..+. . ..-|+
T Consensus 241 -g~~g~~pLEvRflH~P~~~~gFvg~a----Lss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~Lit 315 (461)
T PF05694_consen 241 -GEEGQMPLEVRFLHDPDANYGFVGCA----LSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLIT 315 (461)
T ss_dssp --TTEEEEEEEEE-SSTT--EEEEEEE------EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE-----
T ss_pred -CCCCCceEEEEecCCCCccceEEEEe----ccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceE
Confidence 202 2355666654 3444444432 3445555433 232 222221 1 23478
Q ss_pred EEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCC---eEEEEecCCC---------------CCCeEEEEEecCCCEEEE
Q psy10778 469 SVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKL---AHLLTLNTNV---------------ALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~---~~~~~~~~~h---------------~~~V~~l~~s~dg~~l~s 529 (556)
.|..| .|. ++|.+ .-.+|.|+.||+... +++.++..+- .+...-+..|.||+.|+.
T Consensus 316 DI~iS--lDD---rfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYv 390 (461)
T PF05694_consen 316 DILIS--LDD---RFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYV 390 (461)
T ss_dssp -EEE---TTS----EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEE
T ss_pred eEEEc--cCC---CEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEE
Confidence 89999 777 66655 557999999999653 4444433210 123467889999998887
Q ss_pred EcC
Q psy10778 530 SNT 532 (556)
Q Consensus 530 gs~ 532 (556)
.++
T Consensus 391 TnS 393 (461)
T PF05694_consen 391 TNS 393 (461)
T ss_dssp E--
T ss_pred Eee
Confidence 654
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.04 E-value=6.4 Score=38.38 Aligned_cols=158 Identities=9% Similarity=0.044 Sum_probs=99.1
Q ss_pred ccEEEEEEccCCCEEEEEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.-..++.+..++.++-|.+.-| .|+.+|+.+++..+.... ...----.++... ..|.-... .++...+||.
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l-~~~~FgEGit~~~--d~l~qLTW----k~~~~f~yd~ 117 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPL-PPRYFGEGITILG--DKLYQLTW----KEGTGFVYDP 117 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE--TTT--EEEEEEET--TEEEEEES----SSSEEEEEET
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEEC-CccccceeEEEEC--CEEEEEEe----cCCeEEEEcc
Confidence 3456788878888888888776 799999999998877665 2023334455553 44544443 7899999999
Q ss_pred C-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CC---CCCeEEEEEecCCCEEE
Q psy10778 454 N-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NV---ALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 454 ~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h---~~~V~~l~~s~dg~~l~ 528 (556)
+ -+.+.++...+.-..++. ++ ..|+.......++++|..+.+..+.+.. .. -..+..+.+. +|...|
T Consensus 118 ~tl~~~~~~~y~~EGWGLt~----dg---~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyA 189 (264)
T PF05096_consen 118 NTLKKIGTFPYPGEGWGLTS----DG---KRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYA 189 (264)
T ss_dssp TTTEEEEEEE-SSS--EEEE----CS---SCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEE
T ss_pred ccceEEEEEecCCcceEEEc----CC---CEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEE
Confidence 7 677888876666667773 35 4566666678999999988887777653 11 1235556665 565555
Q ss_pred EEcCCCcEEEEEcCCCCCcC
Q psy10778 529 ASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~ 548 (556)
=.=....|...|..+++...
T Consensus 190 NVW~td~I~~Idp~tG~V~~ 209 (264)
T PF05096_consen 190 NVWQTDRIVRIDPETGKVVG 209 (264)
T ss_dssp EETTSSEEEEEETTT-BEEE
T ss_pred EeCCCCeEEEEeCCCCeEEE
Confidence 55555667777777765543
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.70 E-value=1.6 Score=46.57 Aligned_cols=151 Identities=14% Similarity=0.091 Sum_probs=88.2
Q ss_pred eeCCCccEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC----C-CeEEEEeecCcC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET----N-GEIASVLQTTKT 443 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~----~-~~i~s~s~~~~~ 443 (556)
+..--.++.+++|....+.+.+.- .+|.+++=|- +.+..++ .|..+.|.|- . .++|+-
T Consensus 15 L~qAiHPvhGlaWTDGkqVvLT~L~l~~gE~kfGds---~viGqFE------hV~GlsW~P~~~~~~paLLAVQ------ 79 (671)
T PF15390_consen 15 LHQAIHPVHGLAWTDGKQVVLTDLQLHNGEPKFGDS---KVIGQFE------HVHGLSWAPPCTADTPALLAVQ------ 79 (671)
T ss_pred HHhhhccccceEecCCCEEEEEeeeeeCCccccCCc---cEeeccc------eeeeeeecCcccCCCCceEEEe------
Confidence 444456888999974333444432 2344443332 2333443 3889999885 3 344444
Q ss_pred CCCeEEEEEeC------CcEEEEeec--CC----CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecC
Q psy10778 444 GGSILRLHTIN------AQLITSLAS--EL----RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNT 509 (556)
Q Consensus 444 ~d~~I~iwdi~------g~~i~~~~~--~~----~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~ 509 (556)
....|.+|.+- ++.+....+ .+ -...+.|+ |.. .+|++-.....-.+++++.. +....+.
T Consensus 80 HkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWH--Pk~---~iL~VLT~~dvSV~~sV~~d~srVkaDi~- 153 (671)
T PF15390_consen 80 HKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWH--PKK---AILTVLTARDVSVLPSVHCDSSRVKADIK- 153 (671)
T ss_pred ccceEEEEEeccCccccccceeeeeeeccCCcccCCCccccc--CCC---ceEEEEecCceeEeeeeeeCCceEEEecc-
Confidence 57899999983 344333321 11 23567898 666 56766555544445565432 3333443
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCC-CcEEEEEcCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTE-GLVIIWESSS 543 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~D-g~V~vwdl~~ 543 (556)
..+.|.|.+|.+||+.|+++-.. =.-++||-..
T Consensus 154 -~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~q 187 (671)
T PF15390_consen 154 -TSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQ 187 (671)
T ss_pred -CCceEEEEEecCcCCEEEEEeCCeEEEEEecCch
Confidence 46889999999999877765432 2456887544
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=93.63 E-value=6.4 Score=40.53 Aligned_cols=202 Identities=11% Similarity=0.064 Sum_probs=92.8
Q ss_pred EEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCC-ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10778 331 TTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHS-ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG 408 (556)
Q Consensus 331 ~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~ 408 (556)
+|.+||+.|+.+ ..||.-.+|.++... ..+..|.... .......++++.+.++-......++--|+.+++
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t--------~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e 113 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLAT--------GEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLE 113 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT---------EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEccc--------CEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCc
Confidence 467888766554 457766666655431 1223444333 223356677888877666566789999999987
Q ss_pred EEEEeCCCCCCCCeeEEEE--eCCCCeEEEEeecC-----------------cCCCCeEEEEEeC-CcEEEEeecCCCeE
Q psy10778 409 YIREIPCVDPNTPVSHVTM--SETNGEIASVLQTT-----------------KTGGSILRLHTIN-AQLITSLASELRIT 468 (556)
Q Consensus 409 ~v~~l~~~h~~~~V~~l~~--sp~~~~i~s~s~~~-----------------~~~d~~I~iwdi~-g~~i~~~~~~~~i~ 468 (556)
....+.. . ...+-...| +.++..++-.-... +.....|.-.|+. |+....+.....+.
T Consensus 114 ~~~vy~~-p-~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlg 191 (386)
T PF14583_consen 114 ERVVYEV-P-DDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLG 191 (386)
T ss_dssp EEEEEE----TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EE
T ss_pred EEEEEEC-C-cccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCcccc
Confidence 6555554 3 444544555 34444443322111 1123445555665 55555556778899
Q ss_pred EEEEeeCCCCCcceEEEEEeC---CC-eEEEEeCC-CCeEEEEecC-CCCCCeEEEEEecCCCEEEEEc-----CCCcEE
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHS---DG-TIQLWSGY-KLAHLLTLNT-NVALPVIAVTYSCDSQHLYASN-----TEGLVI 537 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~---dg-~I~iwd~~-~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs-----~Dg~V~ 537 (556)
.+.|+ |... .+|+-+.+ +. .-|||-+. .+...+.+.. .....+..=-|++||..|.--+ .+.-|.
T Consensus 192 H~~fs--P~dp--~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~ 267 (386)
T PF14583_consen 192 HVQFS--PTDP--TLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIA 267 (386)
T ss_dssp EEEEE--TTEE--EEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEE
T ss_pred CcccC--CCCC--CEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEE
Confidence 99999 5441 34544443 22 13566543 3444444431 1123345557888887655322 234566
Q ss_pred EEEcCCCCC
Q psy10778 538 IWESSSHNR 546 (556)
Q Consensus 538 vwdl~~~~~ 546 (556)
-+++.+++.
T Consensus 268 ~~d~~t~~~ 276 (386)
T PF14583_consen 268 GYDPDTGER 276 (386)
T ss_dssp EE-TTT--E
T ss_pred eeCCCCCCc
Confidence 677776543
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=93.52 E-value=11 Score=39.51 Aligned_cols=243 Identities=12% Similarity=0.099 Sum_probs=123.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCc---ceEcCCCCCceEEEEEcC-----CCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELPAT---PVIRPPLGATIATATTAP-----DCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~---~~~~~~h~~~V~~i~~s~-----dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
.++.|+.+|.+|+++...+... ..++..-..+|..++.-. +...||+ =.-..+.||.+............-
T Consensus 39 ~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~~ 117 (418)
T PF14727_consen 39 KIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQY 117 (418)
T ss_pred EEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccCcEE
Confidence 7889999999999998654322 223333457888877542 2234544 335788888885432110000001
Q ss_pred CCeEeeCCCccE--EEEEEcc----C-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 367 PPTILLGHSACV--TDLYLCA----G-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 367 ~~~~l~~h~~~V--~~l~~s~----~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
.+..+..|.-.- ..+++-| . ...+..=|-||.+.+++-+.....+.+.. ---..-+++.+....+++++.
T Consensus 118 ~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~---~llPgPl~Y~~~tDsfvt~ss 194 (418)
T PF14727_consen 118 QLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD---FLLPGPLCYCPRTDSFVTASS 194 (418)
T ss_pred EEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC---CCCCcCeEEeecCCEEEEecC
Confidence 112333333221 2222222 2 24778889999999998775444444332 111222444444444444432
Q ss_pred cC------------c---------------C----------------------------------CCCeEEEEEeCCcEE
Q psy10778 440 TT------------K---------------T----------------------------------GGSILRLHTINAQLI 458 (556)
Q Consensus 440 ~~------------~---------------~----------------------------------~d~~I~iwdi~g~~i 458 (556)
.. . + ....+.+.+-+|.+.
T Consensus 195 s~~l~~Yky~~La~~s~~~~~~~~~~~~~~~~k~l~~dWs~nlGE~~l~i~v~~~~~~~~~IvvLger~Lf~l~~~G~l~ 274 (418)
T PF14727_consen 195 SWTLECYKYQDLASASEASSRQSGTEQDISSGKKLNPDWSFNLGEQALDIQVVRFSSSESDIVVLGERSLFCLKDNGSLR 274 (418)
T ss_pred ceeEEEecHHHhhhccccccccccccccccccccccceeEEECCceeEEEEEEEcCCCCceEEEEecceEEEEcCCCeEE
Confidence 21 0 0 012222222233333
Q ss_pred EEeecCCCeEEEEEeeC---CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe---cCCCEEEEEcC
Q psy10778 459 TSLASELRITSVTFSNA---PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS---CDSQHLYASNT 532 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~---pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s---~dg~~l~sgs~ 532 (556)
...+.+....|++.... .++.....+++++.++++.||. ..+++..-... ..+| ++... .-...|++-+.
T Consensus 275 ~~krLd~~p~~~~~Y~~~~~~~~~~~~~llV~t~t~~LlVy~--d~~L~WsA~l~-~~PV-al~v~~~~~~~G~IV~Ls~ 350 (418)
T PF14727_consen 275 FQKRLDYNPSCFCPYRVPWYNEPSTRLNLLVGTHTGTLLVYE--DTTLVWSAQLP-HVPV-ALSVANFNGLKGLIVSLSD 350 (418)
T ss_pred EEEecCCceeeEEEEEeecccCCCCceEEEEEecCCeEEEEe--CCeEEEecCCC-CCCE-EEEecccCCCCceEEEEcC
Confidence 33333333333332211 1111013588899999999997 34444444421 2333 44333 33467888899
Q ss_pred CCcEEEEEcCCCC
Q psy10778 533 EGLVIIWESSSHN 545 (556)
Q Consensus 533 Dg~V~vwdl~~~~ 545 (556)
+|.+.+-=+.+..
T Consensus 351 ~G~L~v~YLGTdP 363 (418)
T PF14727_consen 351 EGQLSVSYLGTDP 363 (418)
T ss_pred CCcEEEEEeCCCC
Confidence 9999988887743
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=93.17 E-value=8.6 Score=41.36 Aligned_cols=118 Identities=9% Similarity=0.145 Sum_probs=75.0
Q ss_pred eCCCccEEEEEEccCC----CEEEEEcCCCcEEEEeCC-----CCeEEEE----eCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 372 LGHSACVTDLYLCAGF----SVAVSSSEDGTCLLWDIN-----TIGYIRE----IPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~----~~l~sgs~Dg~I~iwdl~-----~~~~v~~----l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
-|.-..|.+++|.|.+ ..+.+......|.||-+. +++.+.. +..+. .--...+.|+|....+++..
T Consensus 53 iGqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~-pvLpQGCVWHPk~~iL~VLT 131 (671)
T PF15390_consen 53 IGQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPF-PVLPQGCVWHPKKAILTVLT 131 (671)
T ss_pred eeccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCc-ccCCCcccccCCCceEEEEe
Confidence 3455668999999853 356666778899999875 2233322 21101 11234678999988887776
Q ss_pred ecCcCCCCeEEEEEeC---CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC
Q psy10778 439 QTTKTGGSILRLHTIN---AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~---g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~ 499 (556)
....-.+++++ .+....++..+.|.|.||. .||. +++++.++.=.-++||-.
T Consensus 132 -----~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT--~DG~--RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 132 -----ARDVSVLPSVHCDSSRVKADIKTSGLIHCACWT--KDGQ--RLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred -----cCceeEeeeeeeCCceEEEeccCCceEEEEEec--CcCC--EEEEEeCCeEEEEEecCc
Confidence 33333456664 4455566788999999999 8883 444444444556899864
|
|
| >PRK10115 protease 2; Provisional | Back alignment and domain information |
|---|
Probab=93.08 E-value=19 Score=40.77 Aligned_cols=195 Identities=10% Similarity=-0.038 Sum_probs=100.5
Q ss_pred ceEEEEEcCCCCEEEEEeCC-----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC-C---
Q psy10778 326 TIATATTAPDCHTLWLGLTS-----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE-D--- 396 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-D--- 396 (556)
.+..+.++|||++|+.+... -.|++.|+.++.. ....+.+- . ..++|+++++.|+-... +
T Consensus 128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~--------l~~~i~~~-~--~~~~w~~D~~~~~y~~~~~~~~ 196 (686)
T PRK10115 128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNW--------YPELLDNV-E--PSFVWANDSWTFYYVRKHPVTL 196 (686)
T ss_pred EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCC--------CCccccCc-c--eEEEEeeCCCEEEEEEecCCCC
Confidence 46678899999988876432 3467777765410 01112211 1 45899999885554432 2
Q ss_pred --CcEEEEeCCCC--eEEEEeCCCCCCCCee-EEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---CcEEEEeecCCC-e
Q psy10778 397 --GTCLLWDINTI--GYIREIPCVDPNTPVS-HVTMSETNGEIASVLQTTKTGGSILRLHTIN---AQLITSLASELR-I 467 (556)
Q Consensus 397 --g~I~iwdl~~~--~~v~~l~~~h~~~~V~-~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~---g~~i~~~~~~~~-i 467 (556)
..|..+++.++ +-...+.. . ..... .+..+.+++.++..+... .++.+.+++.. +........... .
T Consensus 197 ~~~~v~~h~lgt~~~~d~lv~~e-~-~~~~~~~~~~s~d~~~l~i~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 272 (686)
T PRK10115 197 LPYQVWRHTIGTPASQDELVYEE-K-DDTFYVSLHKTTSKHYVVIHLASA--TTSEVLLLDAELADAEPFVFLPRRKDHE 272 (686)
T ss_pred CCCEEEEEECCCChhHCeEEEee-C-CCCEEEEEEEcCCCCEEEEEEECC--ccccEEEEECcCCCCCceEEEECCCCCE
Confidence 35777888877 33333433 2 23333 333444777776555332 55678888852 443333333222 2
Q ss_pred EEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCC-CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYK-LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
..+. . ..+ .+++.... ...|...++.. ++....+.......|..+.+.. +.++++...+|.-+++-+.
T Consensus 273 ~~~~-~--~~~---~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~-~~l~~~~~~~g~~~l~~~~ 344 (686)
T PRK10115 273 YSLD-H--YQH---RFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLFT-DWLVVEERQRGLTSLRQIN 344 (686)
T ss_pred EEEE-e--CCC---EEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEEC-CEEEEEEEeCCEEEEEEEc
Confidence 2222 2 222 33333322 22344445442 2222222211134688888873 3566667777766665554
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=92.88 E-value=7.1 Score=39.13 Aligned_cols=153 Identities=12% Similarity=0.168 Sum_probs=79.8
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
...-.+.+..+.-+++|+++++++.-....-||--.......-.. - ...|..|.|+|++...+++ +++.|+.
T Consensus 140 ~~~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~-~-~~riq~~gf~~~~~lw~~~------~Gg~~~~ 211 (302)
T PF14870_consen 140 VSETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRN-S-SRRIQSMGFSPDGNLWMLA------RGGQIQF 211 (302)
T ss_dssp E-S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE---S-SS-EEEEEE-TTS-EEEEE------TTTEEEE
T ss_pred ccCCcceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccC-c-cceehhceecCCCCEEEEe------CCcEEEE
Confidence 344557788999999999888887666666787654322222222 2 6789999999997776655 6888888
Q ss_pred EEe--CCcEEEE----ee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEe
Q psy10778 451 HTI--NAQLITS----LA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYS 521 (556)
Q Consensus 451 wdi--~g~~i~~----~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s 521 (556)
=+. +++.... .. ..-.+..++|. +++ .+.++|+ .|.+ +.....|+.=..... .-...++.|.|.
T Consensus 212 s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~--~~~---~~wa~gg-~G~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~ 284 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKTNGYGILDLAYR--PPN---EIWAVGG-SGTL-LVSTDGGKTWQKDRVGENVPSNLYRIVFV 284 (302)
T ss_dssp EE-TTEEEEE---B-TTSS--S-EEEEEES--SSS----EEEEES-TT-E-EEESSTTSS-EE-GGGTTSSS---EEEEE
T ss_pred ccCCCCccccccccCCcccCceeeEEEEec--CCC---CEEEEeC-CccE-EEeCCCCccceECccccCCCCceEEEEEc
Confidence 772 2222211 11 12347899998 666 5666655 4544 334445554444332 234568899998
Q ss_pred cCCCEEEEEcCCCcEEEE
Q psy10778 522 CDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vw 539 (556)
.+.+-++ .+.+|.|.-|
T Consensus 285 ~~~~gf~-lG~~G~ll~~ 301 (302)
T PF14870_consen 285 NPDKGFV-LGQDGVLLRY 301 (302)
T ss_dssp ETTEEEE-E-STTEEEEE
T ss_pred CCCceEE-ECCCcEEEEe
Confidence 7655554 4568877655
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=92.83 E-value=14 Score=38.82 Aligned_cols=144 Identities=11% Similarity=0.104 Sum_probs=93.7
Q ss_pred CCEEEEEcCCCcEEEEeCCCCe-----EEEEeCCCCCCCCeeEEEEeC-----CCCeEEEEeecCcCCCCeEEEEEeC--
Q psy10778 387 FSVAVSSSEDGTCLLWDINTIG-----YIREIPCVDPNTPVSHVTMSE-----TNGEIASVLQTTKTGGSILRLHTIN-- 454 (556)
Q Consensus 387 ~~~l~sgs~Dg~I~iwdl~~~~-----~v~~l~~~h~~~~V~~l~~sp-----~~~~i~s~s~~~~~~d~~I~iwdi~-- 454 (556)
...|+.||..|.++|++..... .+-.... ..+|..++.-. +...||+. .-..+.+|.+.
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l---~~PILqv~~G~F~s~~~~~~LaVL------hP~kl~vY~v~~~ 107 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQL---KDPILQVECGKFVSGSEDLQLAVL------HPRKLSVYSVSLV 107 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEEec---CCcEEEEEeccccCCCCcceEEEe------cCCEEEEEEEEec
Confidence 3589999999999999986543 2333443 57788877642 23456665 46788999883
Q ss_pred -Cc--------EEEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 455 -AQ--------LITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 455 -g~--------~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
|. +...+.| .....+++.-+.....+..+|.+=+.||.+.+++-......+.+.. ---...+++.+.
T Consensus 108 ~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~--~llPgPl~Y~~~ 185 (418)
T PF14727_consen 108 DGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD--FLLPGPLCYCPR 185 (418)
T ss_pred CCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC--CCCCcCeEEeec
Confidence 22 1112233 4555666666322222237899999999999999765554555542 222334577777
Q ss_pred CCEEEEEcCCCcEEEEEc
Q psy10778 524 SQHLYASNTEGLVIIWES 541 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl 541 (556)
-..+++++.+..|..|..
T Consensus 186 tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 186 TDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCEEEEecCceeEEEecH
Confidence 788888888888888875
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.66 E-value=15 Score=38.56 Aligned_cols=229 Identities=10% Similarity=0.014 Sum_probs=117.6
Q ss_pred ccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC---------c--EEEEEeeeccCcccccccCC
Q psy10778 299 NECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG---------N--ILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg---------~--I~vwd~~~~~~~~~~~~~~~ 367 (556)
|+....+++.|+++++.+.... ....-..++|.++++.|+....+. - |+.|++.+... +.
T Consensus 146 G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-------~d 216 (414)
T PF02897_consen 146 GSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-------ED 216 (414)
T ss_dssp TSSEEEEEEEETTTTEEEEEEE--EEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-------G-
T ss_pred CCceEEEEEEECCCCcCcCCcc--cccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChH-------hC
Confidence 3444679999999986544321 111223499999988877665433 2 55555544311 11
Q ss_pred CeEeeCCCcc--EEEEEEccCCCEEEEEc-CC---CcEEEEeCCCC----eEEEEeCCCCCCCCe-eEEEEeCCCCeEEE
Q psy10778 368 PTILLGHSAC--VTDLYLCAGFSVAVSSS-ED---GTCLLWDINTI----GYIREIPCVDPNTPV-SHVTMSETNGEIAS 436 (556)
Q Consensus 368 ~~~l~~h~~~--V~~l~~s~~~~~l~sgs-~D---g~I~iwdl~~~----~~v~~l~~~h~~~~V-~~l~~sp~~~~i~s 436 (556)
...+...... ...+..++++++++..+ .. ..+.+.|+..+ ...+.+.. . ...+ ..+... +..+..
T Consensus 217 ~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~-~-~~~~~~~v~~~--~~~~yi 292 (414)
T PF02897_consen 217 ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSP-R-EDGVEYYVDHH--GDRLYI 292 (414)
T ss_dssp EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEE-S-SSS-EEEEEEE--TTEEEE
T ss_pred eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeC-C-CCceEEEEEcc--CCEEEE
Confidence 1233333333 56788999999766433 22 34777788764 22333322 2 2333 333333 444443
Q ss_pred EeecCcCCCCeEEEEEeC-Cc---EE-EEeecCC--CeEEEEEeeCCCCCcceEEEEEeCCC--eEEEEeCCCCeEEEEe
Q psy10778 437 VLQTTKTGGSILRLHTIN-AQ---LI-TSLASEL--RITSVTFSNAPEGVSQNVIVTGHSDG--TIQLWSGYKLAHLLTL 507 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~-g~---~i-~~~~~~~--~i~~i~~s~~pdg~~~~~l~tg~~dg--~I~iwd~~~~~~~~~~ 507 (556)
.+.. ....+.|...++. .. .. ..+.+.. .+..+... .+ .+++....++ .|+++++..+.....+
T Consensus 293 ~Tn~-~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~--~~----~Lvl~~~~~~~~~l~v~~~~~~~~~~~~ 365 (414)
T PF02897_consen 293 LTND-DAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLF--KD----YLVLSYRENGSSRLRVYDLDDGKESREI 365 (414)
T ss_dssp EE-T-T-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEE--TT----EEEEEEEETTEEEEEEEETT-TEEEEEE
T ss_pred eeCC-CCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEE--CC----EEEEEEEECCccEEEEEECCCCcEEeee
Confidence 3321 1145677777775 21 22 2223333 46666655 33 4666666665 5788898745555555
Q ss_pred cCCCCCCeEEEEEecCCCEEE-EEc---CCCcEEEEEcCCCCCc
Q psy10778 508 NTNVALPVIAVTYSCDSQHLY-ASN---TEGLVIIWESSSHNRT 547 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~-sgs---~Dg~V~vwdl~~~~~~ 547 (556)
.....+.|..+...+++..+. +.+ .-+++..||+.+++..
T Consensus 366 ~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 366 PLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLATGELT 409 (414)
T ss_dssp ESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTTTCEE
T ss_pred cCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCCCCEE
Confidence 433345566666556554433 222 2368888999887643
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=92.62 E-value=9.3 Score=39.28 Aligned_cols=176 Identities=16% Similarity=0.162 Sum_probs=92.6
Q ss_pred ccCCCeE--EEEeCCCCCCcceEcC----CCCCceEEEEEcCCCCEEEEEe--CCC---cEEEEEeeeccCcccccccCC
Q psy10778 299 NECDNLI--RLKMSKELPATPVIRP----PLGATIATATTAPDCHTLWLGL--TSG---NILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 299 gs~Dg~I--~lw~~~~~~~~~~~~~----~h~~~V~~i~~s~dg~~l~tgs--~Dg---~I~vwd~~~~~~~~~~~~~~~ 367 (556)
|...-.+ .++++.+++....-.. .-..-+..+.|.++++.|+... .+. .+.+.|..++. .+.. .
T Consensus 152 G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~--~~~~---~ 226 (353)
T PF00930_consen 152 GDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGE--TRVV---L 226 (353)
T ss_dssp TS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTT--CEEE---E
T ss_pred CCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCc--eeEE---E
Confidence 4444444 4477777765422211 2355788999999988455443 332 23444443321 1100 0
Q ss_pred CeEeeCCCccEEEEEEc-cCCC-EEEEEcCCCcEEE--EeCCCCeEEEEeCCCCCCCCee-EEEEeCCCCeEEEEeecCc
Q psy10778 368 PTILLGHSACVTDLYLC-AGFS-VAVSSSEDGTCLL--WDINTIGYIREIPCVDPNTPVS-HVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s-~~~~-~l~sgs~Dg~I~i--wdl~~~~~v~~l~~~h~~~~V~-~l~~sp~~~~i~s~s~~~~ 442 (556)
...-.+.-..-....+. +++. ++.....||--+| .+...+. .+.+.. . .-.|. .+.++++++.|...+....
T Consensus 227 ~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~-~~~lT~-G-~~~V~~i~~~d~~~~~iyf~a~~~~ 303 (353)
T PF00930_consen 227 EETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK-PRQLTS-G-DWEVTSILGWDEDNNRIYFTANGDN 303 (353)
T ss_dssp EEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE-EEESS--S-SS-EEEEEEEECTSSEEEEEESSGG
T ss_pred EecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc-eecccc-C-ceeecccceEcCCCCEEEEEecCCC
Confidence 01111111222244444 5554 4555557776555 4665544 456655 3 56674 4778998888776654322
Q ss_pred CCCCeEEEEEeC-CcEEEEeecCCCeE-EEEEeeCCCCCcceEEEEE
Q psy10778 443 TGGSILRLHTIN-AQLITSLASELRIT-SVTFSNAPEGVSQNVIVTG 487 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~~~~~~i~-~i~~s~~pdg~~~~~l~tg 487 (556)
.....|+..+++ +..+..+....... .+.|| |+| ++++..
T Consensus 304 p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~S--pdg---~y~v~~ 345 (353)
T PF00930_consen 304 PGERHLYRVSLDSGGEPKCLTCEDGDHYSASFS--PDG---KYYVDT 345 (353)
T ss_dssp TTSBEEEEEETTETTEEEESSTTSSTTEEEEE---TTS---SEEEEE
T ss_pred CCceEEEEEEeCCCCCeEeccCCCCCceEEEEC--CCC---CEEEEE
Confidence 245567777777 77888887655555 99999 888 565543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family | Back alignment and domain information |
|---|
Probab=92.61 E-value=23 Score=40.49 Aligned_cols=156 Identities=10% Similarity=0.074 Sum_probs=91.7
Q ss_pred CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCee-------------EEEEeC--CCCeEEEEeecCc-----CCCC
Q psy10778 387 FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVS-------------HVTMSE--TNGEIASVLQTTK-----TGGS 446 (556)
Q Consensus 387 ~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~-------------~l~~sp--~~~~i~s~s~~~~-----~~d~ 446 (556)
+..++.++.|+.+.-.|.++|+.+..+.. .+.|. .+.-.| .++.+++++.... ..+|
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~---~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G 336 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN---NGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSG 336 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC---CCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCc
Confidence 45788889999999999999998876543 22221 111111 1345666642110 1268
Q ss_pred eEEEEEeC-CcEEEEeecC----------C--------Ce-EEEEEeeCCCCCcceEEEEEe------------------
Q psy10778 447 ILRLHTIN-AQLITSLASE----------L--------RI-TSVTFSNAPEGVSQNVIVTGH------------------ 488 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~~~----------~--------~i-~~i~~s~~pdg~~~~~l~tg~------------------ 488 (556)
.|+-+|.+ |+++-..... + .+ ..+++. ++. .++..+.
T Consensus 337 ~I~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D--~~~---glvy~ptGn~~pd~~g~~r~~~~n~ 411 (764)
T TIGR03074 337 VIRAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYD--EKL---GLVYLPMGNQTPDQWGGDRTPADEK 411 (764)
T ss_pred EEEEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEc--CCC---CeEEEeCCCccccccCCccccCccc
Confidence 89999997 8877665321 0 00 122333 222 2333322
Q ss_pred CCCeEEEEeCCCCeEEEEecC-CCC-------CCeEEEEEec-CCC---EEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 489 SDGTIQLWSGYKLAHLLTLNT-NVA-------LPVIAVTYSC-DSQ---HLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 489 ~dg~I~iwd~~~~~~~~~~~~-~h~-------~~V~~l~~s~-dg~---~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
..+.|.-.|..+|+....+.. .|+ ....-+.+.. +|+ .++.++.+|.+.+.|.++++.+...
T Consensus 412 y~~slvALD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~ 485 (764)
T TIGR03074 412 YSSSLVALDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPV 485 (764)
T ss_pred ccceEEEEeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeec
Confidence 124566678888988877764 221 1122223333 563 7999999999999999998765543
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases. |
| >KOG3630|consensus | Back alignment and domain information |
|---|
Probab=92.60 E-value=1.7 Score=49.80 Aligned_cols=140 Identities=9% Similarity=0.024 Sum_probs=91.9
Q ss_pred CceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCC---eEeeCCCccEEEEEEccCCC-EEEEEcCCCc
Q psy10778 325 ATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPP---TILLGHSACVTDLYLCAGFS-VAVSSSEDGT 398 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~---~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~ 398 (556)
-.|..+...+|+...++... +-.|..||+..-....... ..++ ++.........++.|.|.-. ..+....|+.
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~-~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dls 179 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYET-TVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLS 179 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhh-ccccccccchhccccccccccccCCccchhhhhccccc
Confidence 45666677778766555543 3378888887542111100 1111 12222334466888988654 4566678999
Q ss_pred EEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-----CCCeEEEEE
Q psy10778 399 CLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-----ELRITSVTF 472 (556)
Q Consensus 399 I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-----~~~i~~i~~ 472 (556)
|++..+.... .+..+.. ....++++|+|.|+.++.|- ..|++.-|...++....+.. ..+|.+++|
T Consensus 180 l~V~~~~~~~~~v~s~p~---t~~~Tav~WSprGKQl~iG~-----nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~W 251 (1405)
T KOG3630|consen 180 LRVKSTKQLAQNVTSFPV---TNSQTAVLWSPRGKQLFIGR-----NNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTW 251 (1405)
T ss_pred hhhhhhhhhhhhhcccCc---ccceeeEEeccccceeeEec-----CCCeEEEeecccceeecccCCCcCCCcceeEEEE
Confidence 9988776433 2334444 67899999999999999998 78999999888776666642 368999999
Q ss_pred e
Q psy10778 473 S 473 (556)
Q Consensus 473 s 473 (556)
-
T Consensus 252 l 252 (1405)
T KOG3630|consen 252 L 252 (1405)
T ss_pred e
Confidence 8
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=92.37 E-value=4.8 Score=43.97 Aligned_cols=149 Identities=9% Similarity=0.030 Sum_probs=71.3
Q ss_pred CCCEEEEEcCC-----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc-CCCCeEEEEEeCCcEEE
Q psy10778 386 GFSVAVSSSED-----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK-TGGSILRLHTINAQLIT 459 (556)
Q Consensus 386 ~~~~l~sgs~D-----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~-~~d~~I~iwdi~g~~i~ 459 (556)
++.+.+.|+.+ ..+..||..+.+....-..+.+.... +++ .-++...+.|+.... ..-+.+..||.....-.
T Consensus 342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~-~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~ 419 (534)
T PHA03098 342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNP-CVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWS 419 (534)
T ss_pred CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccc-eEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeee
Confidence 56777788765 35778888776543221110101111 222 224455555552110 01256788888633222
Q ss_pred Eee---cCCCeEEEEEeeCCCCCcceEEEEEeCC--------CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEE
Q psy10778 460 SLA---SELRITSVTFSNAPEGVSQNVIVTGHSD--------GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 460 ~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 528 (556)
... ....-.+++.. ++ .+++.|+.+ ..+.+||..+.+-...-.......-.+++ .-+++.++
T Consensus 420 ~~~~~p~~r~~~~~~~~---~~---~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~iyv 492 (534)
T PHA03098 420 KGSPLPISHYGGCAIYH---DG---KIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLC-IFNNKIYV 492 (534)
T ss_pred ecCCCCccccCceEEEE---CC---EEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEE-EECCEEEE
Confidence 221 11111223332 44 677777643 23788888765533221111111111222 22677777
Q ss_pred EEcCC-----CcEEEEEcCC
Q psy10778 529 ASNTE-----GLVIIWESSS 543 (556)
Q Consensus 529 sgs~D-----g~V~vwdl~~ 543 (556)
.|+.+ +.+.++|..+
T Consensus 493 ~GG~~~~~~~~~v~~yd~~~ 512 (534)
T PHA03098 493 VGGDKYEYYINEIEVYDDKT 512 (534)
T ss_pred EcCCcCCcccceeEEEeCCC
Confidence 77754 4688888876
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=91.81 E-value=17 Score=37.17 Aligned_cols=150 Identities=9% Similarity=0.104 Sum_probs=85.9
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEE-EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLL-WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~i-wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...+.++.+.+++.+++++ ..|.+.. +|- .++....+.... ...+..+.+.+++..++++ ..|.+++=+.
T Consensus 172 ~g~~~~i~~~~~g~~v~~g-~~G~i~~s~~~-gg~tW~~~~~~~-~~~l~~i~~~~~g~~~~vg------~~G~~~~~s~ 242 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVS-SRGNFYSTWEP-GQTAWTPHQRNS-SRRLQSMGFQPDGNLWMLA------RGGQIRFNDP 242 (334)
T ss_pred cceEEEEEECCCCeEEEEe-CCceEEEEcCC-CCCeEEEeeCCC-cccceeeeEcCCCCEEEEe------cCCEEEEccC
Confidence 4568899999988666554 4554443 221 223222233212 5788999999988877765 4676654334
Q ss_pred C-CcEEEEee-----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCC
Q psy10778 454 N-AQLITSLA-----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQ 525 (556)
Q Consensus 454 ~-g~~i~~~~-----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~ 525 (556)
+ |..-.... ....+.++.+. +++ .++++| .+|.+.. ....++.-..... .-....+.+.+..+++
T Consensus 243 d~G~sW~~~~~~~~~~~~~l~~v~~~--~~~---~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~ 315 (334)
T PRK13684 243 DDLESWSKPIIPEITNGYGYLDLAYR--TPG---EIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEK 315 (334)
T ss_pred CCCCccccccCCccccccceeeEEEc--CCC---CEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCc
Confidence 4 43322221 12357788888 666 555544 5665543 3344443333321 2224578888887766
Q ss_pred EEEEEcCCCcEEEEEc
Q psy10778 526 HLYASNTEGLVIIWES 541 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl 541 (556)
.++ .+..|.|..|+-
T Consensus 316 ~~~-~G~~G~il~~~~ 330 (334)
T PRK13684 316 GFV-LGQRGVLLRYVG 330 (334)
T ss_pred eEE-ECCCceEEEecC
Confidence 655 566888877754
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=91.40 E-value=17 Score=36.47 Aligned_cols=150 Identities=11% Similarity=0.038 Sum_probs=75.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.-.+.+..+.-++||+++++++.-....-|+--.. .-...-+.-...|..+.|.+++.+.+.+ +.|.|+.
T Consensus 142 ~~~gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~---------~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~ 211 (302)
T PF14870_consen 142 ETSGSINDITRSSDGRYVAVSSRGNFYSSWDPGQT---------TWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQF 211 (302)
T ss_dssp S----EEEEEE-TTS-EEEEETTSSEEEEE-TT-S---------S-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEE
T ss_pred CCcceeEeEEECCCCcEEEEECcccEEEEecCCCc---------cceEEccCccceehhceecCCCCEEEEe-CCcEEEE
Confidence 45577889999999999988876544555653321 0112223346789999999998765544 7888887
Q ss_pred EeC-CCCeEEEE----eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee----cCCCeEEEE
Q psy10778 402 WDI-NTIGYIRE----IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA----SELRITSVT 471 (556)
Q Consensus 402 wdl-~~~~~v~~----l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~----~~~~i~~i~ 471 (556)
=+. ...+.... +.. . .-.+..+++.+++...++++ .|.+.. ..+ |+--.... ....+..+.
T Consensus 212 s~~~~~~~~w~~~~~~~~~-~-~~~~ld~a~~~~~~~wa~gg------~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~ 282 (302)
T PF14870_consen 212 SDDPDDGETWSEPIIPIKT-N-GYGILDLAYRPPNEIWAVGG------SGTLLV-STDGGKTWQKDRVGENVPSNLYRIV 282 (302)
T ss_dssp EE-TTEEEEE---B-TTSS----S-EEEEEESSSS-EEEEES------TT-EEE-ESSTTSS-EE-GGGTTSSS---EEE
T ss_pred ccCCCCccccccccCCccc-C-ceeeEEEEecCCCCEEEEeC------CccEEE-eCCCCccceECccccCCCCceEEEE
Confidence 772 22222222 111 1 33478999999877777664 554433 333 54333332 245788899
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
|. .+. +-++.|. +|.|--|
T Consensus 283 f~--~~~---~gf~lG~-~G~ll~~ 301 (302)
T PF14870_consen 283 FV--NPD---KGFVLGQ-DGVLLRY 301 (302)
T ss_dssp EE--ETT---EEEEE-S-TTEEEEE
T ss_pred Ec--CCC---ceEEECC-CcEEEEe
Confidence 98 333 4566554 6766544
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=91.32 E-value=11 Score=44.36 Aligned_cols=148 Identities=14% Similarity=0.176 Sum_probs=86.9
Q ss_pred EeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEc--------CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 297 CWNECDNLIRLKMSKELPATPVIRPPLGATIATATTA--------PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 297 ~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s--------~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
+|-+.|+.+.+|+.+++.....+. +-...|..+... |.=+++.+-+.--.|.++-+...............
T Consensus 93 aWiTiDn~L~lWny~~~~e~~~~d-~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~~ 171 (1311)
T KOG1900|consen 93 AWITIDNNLFLWNYESDNELAEYD-GLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGELSIFNTS 171 (1311)
T ss_pred eEEEeCCeEEEEEcCCCCcccccc-chhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcccccccc
Confidence 578899999999999865555443 334455555432 22233333333456777766554222211100001
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC----CC---e--------------E---EEEeCCCCCCCCeeE
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN----TI---G--------------Y---IREIPCVDPNTPVSH 424 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~----~~---~--------------~---v~~l~~~h~~~~V~~ 424 (556)
-.+......|+|+....+|+++.+| .|| .+|.+. .+ + . +-.+.+.+ ..+|..
T Consensus 172 ~~i~~dg~~V~~I~~t~nGRIF~~G-~dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~-~dpI~q 247 (1311)
T KOG1900|consen 172 FKISVDGVSVNCITYTENGRIFFAG-RDG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSS-KDPIRQ 247 (1311)
T ss_pred eeeecCCceEEEEEeccCCcEEEee-cCC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCC-CCccee
Confidence 1222335568888867777766665 455 444431 11 0 0 11233114 678999
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
+++....+.+.+-+ +.++|..||+.
T Consensus 248 i~ID~SR~IlY~ls-----ek~~v~~Y~i~ 272 (1311)
T KOG1900|consen 248 ITIDNSRNILYVLS-----EKGTVSAYDIG 272 (1311)
T ss_pred eEeccccceeeeec-----cCceEEEEEcc
Confidence 99998888888888 89999999995
|
|
| >KOG4441|consensus | Back alignment and domain information |
|---|
Probab=90.84 E-value=17 Score=40.19 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=91.1
Q ss_pred eEEeccCC------CeEEEEeCCCCCCcceEcC---CCCCceEEEEEcCCCCEEEEEeCCCc-----EEEEEeeeccCcc
Q psy10778 295 MICWNECD------NLIRLKMSKELPATPVIRP---PLGATIATATTAPDCHTLWLGLTSGN-----ILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~D------g~I~lw~~~~~~~~~~~~~---~h~~~V~~i~~s~dg~~l~tgs~Dg~-----I~vwd~~~~~~~~ 360 (556)
+.+.|+.| .++..||...++....-.. .+..++.. -+|...|+||.||. +-.||..+..
T Consensus 335 lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~----l~g~iYavGG~dg~~~l~svE~YDp~~~~--- 407 (571)
T KOG4441|consen 335 LYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAV----LDGKLYAVGGFDGEKSLNSVECYDPVTNK--- 407 (571)
T ss_pred EEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeEE----ECCEEEEEeccccccccccEEEecCCCCc---
Confidence 67778777 3566778777654442211 11122222 26789999999975 5666665542
Q ss_pred cccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC------cEEEEeCCCCeEEEE--eCCCCCCCCeeEEEEeCCCC
Q psy10778 361 KIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG------TCLLWDINTIGYIRE--IPCVDPNTPVSHVTMSETNG 432 (556)
Q Consensus 361 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg------~I~iwdl~~~~~v~~--l~~~h~~~~V~~l~~sp~~~ 432 (556)
+..+..+.......-.+ .-+|.+.+.|+.++ ++..||..+.+.... +.. . .... .++.- ++.
T Consensus 408 ----W~~va~m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~-~-R~~~-g~a~~-~~~ 477 (571)
T KOG4441|consen 408 ----WTPVAPMLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNT-R-RSGF-GVAVL-NGK 477 (571)
T ss_pred ----ccccCCCCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCccc-c-cccc-eEEEE-CCE
Confidence 12222222111111122 23577788888654 467788877654322 222 1 1111 23222 345
Q ss_pred eEEEEeecCcCCCCeEEEEEeCCcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEeCCCe-----EEEEeCCC
Q psy10778 433 EIASVLQTTKTGGSILRLHTINAQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGHSDGT-----IQLWSGYK 500 (556)
Q Consensus 433 ~i~s~s~~~~~~d~~I~iwdi~g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-----I~iwd~~~ 500 (556)
..+.|+.++.....+|..||.....-... ........++.. ++ .+.++|+.||. |..||..+
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~---~~---~ly~vGG~~~~~~l~~ve~ydp~~ 547 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL---GG---KLYAVGGFDGNNNLNTVECYDPET 547 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE---CC---EEEEEecccCccccceeEEcCCCC
Confidence 55666532211233477788864333222 222222223322 34 67888887764 55555443
|
|
| >PHA03098 kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=90.79 E-value=6.4 Score=43.04 Aligned_cols=189 Identities=8% Similarity=-0.065 Sum_probs=84.7
Q ss_pred eEEeccCCC------eEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcccc
Q psy10778 295 MICWNECDN------LIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg------~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~ 362 (556)
+++.|+.++ .+..||..+.+....-... .......+. -+++..+.||.++ .+..||..++...
T Consensus 297 lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~--~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~--- 371 (534)
T PHA03098 297 IYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTV--FNNRIYVIGGIYNSISLNTVESWKPGESKWR--- 371 (534)
T ss_pred EEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEEE--ECCEEEEEeCCCCCEecceEEEEcCCCCcee---
Confidence 555665442 4667777765543221111 111222222 3567888888653 4566666544211
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEE
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s 436 (556)
....+....... ++ ..-++.+.+.|+.+ ..+..||..+.+....-..+. ...-.++ ..-++..++.
T Consensus 372 ----~~~~lp~~r~~~-~~-~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~-~r~~~~~-~~~~~~iyv~ 443 (534)
T PHA03098 372 ----EEPPLIFPRYNP-CV-VNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPI-SHYGGCA-IYHDGKIYVI 443 (534)
T ss_pred ----eCCCcCcCCccc-eE-EEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCc-cccCceE-EEECCEEEEE
Confidence 111111111111 11 12356677777632 458889988765433211100 1111122 2234455555
Q ss_pred EeecCcCC---CCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCe
Q psy10778 437 VLQTTKTG---GSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLA 502 (556)
Q Consensus 437 ~s~~~~~~---d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~ 502 (556)
|+...... -..+..||.....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+
T Consensus 444 GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~---~iyv~GG~~~~~~~~~v~~yd~~~~~ 514 (534)
T PHA03098 444 GGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF---NN---KIYVVGGDKYEYYINEIEVYDDKTNT 514 (534)
T ss_pred CCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE---CC---EEEEEcCCcCCcccceeEEEeCCCCE
Confidence 55221000 134788888633222221 11111122222 45 677777654 467778776544
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=90.74 E-value=10 Score=32.82 Aligned_cols=116 Identities=7% Similarity=0.020 Sum_probs=71.4
Q ss_pred EEEccCCCEEEEEcCCCcEEEEeCCCC--------eEEEEeCCCCCCCCeeEEEEeC-----CCCeEEEEeecCcCCCCe
Q psy10778 381 LYLCAGFSVAVSSSEDGTCLLWDINTI--------GYIREIPCVDPNTPVSHVTMSE-----TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 381 l~~s~~~~~l~sgs~Dg~I~iwdl~~~--------~~v~~l~~~h~~~~V~~l~~sp-----~~~~i~s~s~~~~~~d~~ 447 (556)
-.|......|+.++.-|.|.|++.... ..++.+.- ...|++++--+ +...|+.| ....
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNi---n~~italaaG~l~~~~~~D~LliG------t~t~ 74 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNI---NQEITALAAGRLKPDDGRDCLLIG------TQTS 74 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEEC---CCceEEEEEEecCCCCCcCEEEEe------ccce
Confidence 345555557788888889999987632 34566665 67788887654 23455555 4789
Q ss_pred EEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 448 LRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 448 I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
|..||+. ..-+.....+..++++.+-...+. ...++++|+ +..|.-+|..-.+...+.
T Consensus 75 llaYDV~~N~d~Fyke~~DGvn~i~~g~~~~~-~~~l~ivGG-ncsi~Gfd~~G~e~fWtV 133 (136)
T PF14781_consen 75 LLAYDVENNSDLFYKEVPDGVNAIVIGKLGDI-PSPLVIVGG-NCSIQGFDYEGNEIFWTV 133 (136)
T ss_pred EEEEEcccCchhhhhhCccceeEEEEEecCCC-CCcEEEECc-eEEEEEeCCCCcEEEEEe
Confidence 9999996 333333345677888877532221 114555554 567777776544444444
|
|
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=90.38 E-value=6.7 Score=43.27 Aligned_cols=201 Identities=8% Similarity=0.045 Sum_probs=100.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
...++..++..+|.. ..=..+..-.|+|+++... .+..+.-....+..+.|+.+.. |+...++|++++
T Consensus 41 Ap~gGpIAV~r~p~~-~~~~~~a~~~I~If~~sG~----------lL~~~~w~~~~lI~mgWs~~ee-LI~v~k~g~v~V 108 (829)
T KOG2280|consen 41 APFGGPIAVTRSPSK-LVPLYSARPYIRIFNISGQ----------LLGRILWKHGELIGMGWSDDEE-LICVQKDGTVHV 108 (829)
T ss_pred cccCCceEEEecccc-cccccccceeEEEEecccc----------chHHHHhcCCCeeeecccCCce-EEEEeccceEEE
Confidence 334445556555531 1101133356888887643 3333333344888999997655 555689999999
Q ss_pred EeCCCCeEEEE--e--CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-EEEEeec--CCCeEEEEEee
Q psy10778 402 WDINTIGYIRE--I--PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ-LITSLAS--ELRITSVTFSN 474 (556)
Q Consensus 402 wdl~~~~~v~~--l--~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-~i~~~~~--~~~i~~i~~s~ 474 (556)
+++. |+.+.. + +. . ...|..+.+..+|-.+.+ .+|++.+.+-.++ .+...+. .....+-+|.-
T Consensus 109 y~~~-ge~ie~~svg~e~-~-~~~I~ec~~f~~GVavlt-------~~g~v~~i~~~~~~~~~~~~diP~~~~~~~~Wt~ 178 (829)
T KOG2280|consen 109 YGLL-GEFIESNSVGFES-Q-MSDIVECRFFHNGVAVLT-------VSGQVILINGVEEPKLRKMPDIPYNELPKSCWTV 178 (829)
T ss_pred eecc-hhhhccccccccc-c-cCceeEEEEecCceEEEe-------cCCcEEEEcCCCcchhhhCCCCCCccCCCcceeE
Confidence 9987 444433 2 22 2 234555555544332332 3455555433333 3333321 11222233332
Q ss_pred CCCCCcceEEEEEe-CCCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 475 APEGVSQNVIVTGH-SDGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 475 ~pdg~~~~~l~tg~-~dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
.+++.....++--. ..| ..+...... .....+. ...+.+..+..||+.++|+--..+|.|.+-+.+-.++
T Consensus 179 ~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~-~~~~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~ 250 (829)
T KOG2280|consen 179 FQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALS-WPNSSVVKISVSPNRRFLALYTETGKIWVVSIDLSQI 250 (829)
T ss_pred ecCCCcceeEEeechhhh-hcccceecccccccccC-CCCceEEEEEEcCCcceEEEEecCCcEEEEecchhhh
Confidence 23321111221111 111 111111111 1122222 1236788899999999999999999999888766443
|
|
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=90.31 E-value=12 Score=38.72 Aligned_cols=151 Identities=13% Similarity=0.018 Sum_probs=81.0
Q ss_pred CceEEEEEcCCCCEEEEEe-----------CCC-cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEE
Q psy10778 325 ATIATATTAPDCHTLWLGL-----------TSG-NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVS 392 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs-----------~Dg-~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s 392 (556)
.....++|.++|+++++-. ..+ .|.+++-..+ .++. .....+.........+++.+++ ++++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dg--dG~~---d~~~vfa~~l~~p~Gi~~~~~G-lyV~ 87 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADG--DGKY---DKSNVFAEELSMVTGLAVAVGG-VYVA 87 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCC--CCCc---ceeEEeecCCCCccceeEecCC-EEEe
Confidence 3456889999998777643 122 5655543222 1111 1123344444456889998888 5554
Q ss_pred EcCCCcEEEEeCCC-------CeEEE-EeCCCC---CCCCeeEEEEeCCCCeEEEEeecC--------------cCCCCe
Q psy10778 393 SSEDGTCLLWDINT-------IGYIR-EIPCVD---PNTPVSHVTMSETNGEIASVLQTT--------------KTGGSI 447 (556)
Q Consensus 393 gs~Dg~I~iwdl~~-------~~~v~-~l~~~h---~~~~V~~l~~sp~~~~i~s~s~~~--------------~~~d~~ 447 (556)
+.....++.|... .+.+. .+.. . .......+++.|||...++.+... ....+.
T Consensus 88 -~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~-~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~ 165 (367)
T TIGR02604 88 -TPPDILFLRDKDGDDKADGEREVLLSGFGG-QINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGG 165 (367)
T ss_pred -CCCeEEEEeCCCCCCCCCCccEEEEEccCC-CCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCce
Confidence 4444333445431 11121 2222 1 023477899999987766555210 001245
Q ss_pred EEEEEeCCcEEEEeec-CCCeEEEEEeeCCCCCcceEEEEEe
Q psy10778 448 LRLHTINAQLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGH 488 (556)
Q Consensus 448 I~iwdi~g~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~ 488 (556)
|.-++.++..+..+.. -.....++|+ ++| +++++-.
T Consensus 166 i~r~~pdg~~~e~~a~G~rnp~Gl~~d--~~G---~l~~tdn 202 (367)
T TIGR02604 166 LFRYNPDGGKLRVVAHGFQNPYGHSVD--SWG---DVFFCDN 202 (367)
T ss_pred EEEEecCCCeEEEEecCcCCCccceEC--CCC---CEEEEcc
Confidence 6666666655544432 3446789998 788 6766644
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus | Back alignment and domain information |
|---|
Probab=90.18 E-value=3.6 Score=43.08 Aligned_cols=91 Identities=12% Similarity=0.070 Sum_probs=61.5
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC--------------
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-------------- 432 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-------------- 432 (556)
....+......+.+|+.+|.+++.++...=|.|.++|+.++..++.+++ ..+..+.-+.....+.
T Consensus 299 ~r~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKG-YRdAqc~wi~~~~~~~~~~~~~~~~~~~~~ 377 (415)
T PF14655_consen 299 MRFGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKG-YRDAQCGWIEVPEEGDRDRSNSNSPKSSSR 377 (415)
T ss_pred eEEeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhcc-CccceEEEEEeecccccccccccccCCCCc
Confidence 3445666777899999999999999988889999999999999988887 4123332222222211
Q ss_pred ---eEEEEeecCcCCCCeEEEEEeC-CcEEEEee
Q psy10778 433 ---EIASVLQTTKTGGSILRLHTIN-AQLITSLA 462 (556)
Q Consensus 433 ---~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~ 462 (556)
.|+.-.- ..|.|.+|+++ |..+..+.
T Consensus 378 ~~l~LvIyap----rRg~lEvW~~~~g~Rv~a~~ 407 (415)
T PF14655_consen 378 FALFLVIYAP----RRGILEVWSMRQGPRVAAFN 407 (415)
T ss_pred ceEEEEEEec----cCCeEEEEecCCCCEEEEEE
Confidence 2222221 67888888886 66665553
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=89.96 E-value=16 Score=40.79 Aligned_cols=154 Identities=13% Similarity=0.150 Sum_probs=92.1
Q ss_pred CCEEEEEeCCCcEEEEEeeeccCcccc-----cccCCC------eEe--eCCCccEEEEEEcc--CCCEEEEEcCCCcEE
Q psy10778 336 CHTLWLGLTSGNILVYEYELNASTNKI-----EFCKPP------TIL--LGHSACVTDLYLCA--GFSVAVSSSEDGTCL 400 (556)
Q Consensus 336 g~~l~tgs~Dg~I~vwd~~~~~~~~~~-----~~~~~~------~~l--~~h~~~V~~l~~s~--~~~~l~sgs~Dg~I~ 400 (556)
+.++++|. .+.|.||+.+........ ....+. ... ..-...|+.|.... ....|+.+.+||.|.
T Consensus 49 ~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~EVLl~c~DdG~V~ 127 (717)
T PF08728_consen 49 RNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEEVLLLCTDDGDVL 127 (717)
T ss_pred CCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCeeEEEEEecCCeEE
Confidence 56777766 589999998654321110 000000 000 00223456665544 335899999999999
Q ss_pred EEeCCC-------C----e---------EEEEeCCCCCCCCeeEEEEe--CCCCeEEEEeecCcCCCCeEEEEEeCC---
Q psy10778 401 LWDINT-------I----G---------YIREIPCVDPNTPVSHVTMS--ETNGEIASVLQTTKTGGSILRLHTINA--- 455 (556)
Q Consensus 401 iwdl~~-------~----~---------~v~~l~~~h~~~~V~~l~~s--p~~~~i~s~s~~~~~~d~~I~iwdi~g--- 455 (556)
+|.+.+ . . +-..+.. ...+..++++ ...+.||+++ ....|.||-...
T Consensus 128 ~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v---~~SaWGLdIh~~~~~rlIAVSs-----Ns~~VTVFaf~l~~~ 199 (717)
T PF08728_consen 128 AYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRV---GASAWGLDIHDYKKSRLIAVSS-----NSQEVTVFAFALVDE 199 (717)
T ss_pred EEEHHHHHHHHHhhccccccccccccCCCCeEeec---CCceeEEEEEecCcceEEEEec-----CCceEEEEEEecccc
Confidence 996532 1 0 1112222 4678899998 7777888877 677888876531
Q ss_pred c--EEEEeecCCCeEEEEEeeCCCCC-cceEEEEEeCCCeEEEEeC
Q psy10778 456 Q--LITSLASELRITSVTFSNAPEGV-SQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 456 ~--~i~~~~~~~~i~~i~~s~~pdg~-~~~~l~tg~~dg~I~iwd~ 498 (556)
+ ......+...|.+|+|-+...+. +...+++++-.|.+.+|++
T Consensus 200 r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 200 RFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 1 11123456789999998433211 1127778889999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=89.81 E-value=16 Score=34.50 Aligned_cols=49 Identities=8% Similarity=0.127 Sum_probs=37.8
Q ss_pred CEEEEEcCCCcEEEEeCC--CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 388 SVAVSSSEDGTCLLWDIN--TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~--~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
+.|..+...+.|.+|++. ..+...++.. -+.|..++++..|+++++.-.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~T---v~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFST---VGRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcc---hhheeEEEeccccceEEEEEe
Confidence 344444667889999988 3356667776 688999999999999999864
|
|
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=89.77 E-value=15 Score=34.97 Aligned_cols=128 Identities=7% Similarity=-0.015 Sum_probs=78.2
Q ss_pred CCeeEEEEeCCCCeEEEEeecC----cCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEE
Q psy10778 420 TPVSHVTMSETNGEIASVLQTT----KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQL 495 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~----~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~i 495 (556)
...+.-..+|+|++.+-.-.+- ....+.++.|-..++.-.....-.--+.++|+ .+.. .+.++-+.+-+|.-
T Consensus 109 nR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~h~v~~i~~~v~IsNgl~Wd--~d~K--~fY~iDsln~~V~a 184 (310)
T KOG4499|consen 109 NRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAGHQVELIWNCVGISNGLAWD--SDAK--KFYYIDSLNYEVDA 184 (310)
T ss_pred cccccCccCCCCceeeeeeccccccccccccEEEEeccCCCceeeehhccCCcccccc--ccCc--EEEEEccCceEEee
Confidence 3455667789988844221100 11345666666655544444334445678888 5552 56667777888877
Q ss_pred Ee--CCCCe-----EEEEecC---CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 496 WS--GYKLA-----HLLTLNT---NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 496 wd--~~~~~-----~~~~~~~---~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|| ..+|. .+..+.. ...-..-.++...+|.+.++.-..|+|...|..+++.+..++
T Consensus 185 ~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eik 250 (310)
T KOG4499|consen 185 YDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIK 250 (310)
T ss_pred eecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEE
Confidence 87 44443 3333331 011223456667788888888899999999999988765543
|
|
| >KOG1916|consensus | Back alignment and domain information |
|---|
Probab=89.53 E-value=0.37 Score=53.42 Aligned_cols=115 Identities=17% Similarity=0.158 Sum_probs=68.5
Q ss_pred CeEEEEeCC--CCCCcceEcC----CCCCceEEEEEc---CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 303 NLIRLKMSK--ELPATPVIRP----PLGATIATATTA---PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 303 g~I~lw~~~--~~~~~~~~~~----~h~~~V~~i~~s---~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
|.+-||++. .|++...+.. .-...+.-+.|+ ++.-++..+-.+++|++..+... ....+.+
T Consensus 153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra----------~~~l~rs 222 (1283)
T KOG1916|consen 153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRA----------LRSLFRS 222 (1283)
T ss_pred hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechH----------HHHHHHh
Confidence 567778765 3443332221 112233444454 46677778888999999887653 1134556
Q ss_pred CCccEEEEE-----------EccCCCEEEEEcCCCcEEEEeCC-----CCeEEEEeCCCCCCCCeeEEEEe
Q psy10778 374 HSACVTDLY-----------LCAGFSVAVSSSEDGTCLLWDIN-----TIGYIREIPCVDPNTPVSHVTMS 428 (556)
Q Consensus 374 h~~~V~~l~-----------~s~~~~~l~sgs~Dg~I~iwdl~-----~~~~v~~l~~~h~~~~V~~l~~s 428 (556)
|...++.++ .||||+.++.++.||.++.|.+. ...++..++. |+..+-.|..++
T Consensus 223 Hs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkp-hd~~p~vC~lc~ 292 (1283)
T KOG1916|consen 223 HSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKP-HDKHPRVCWLCH 292 (1283)
T ss_pred cCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCC-CCCCCceeeeec
Confidence 766655543 58899999999999998888653 1234455666 622444443343
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=89.53 E-value=16 Score=41.41 Aligned_cols=26 Identities=19% Similarity=0.100 Sum_probs=20.4
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
-.|..|.++++|+.++..+..|.+.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~ 110 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVL 110 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEE
Confidence 46888999999999888887664443
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=89.52 E-value=19 Score=38.87 Aligned_cols=145 Identities=7% Similarity=-0.050 Sum_probs=69.6
Q ss_pred cCCCEEEEEcCC--CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee
Q psy10778 385 AGFSVAVSSSED--GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA 462 (556)
Q Consensus 385 ~~~~~l~sgs~D--g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~ 462 (556)
-++.+.+.|+.+ .++..||..+++....-.. . .......+..-++...+.|+... ....+..||.+...-....
T Consensus 317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l-~-~~r~~~~~~~~~g~IYviGG~~~--~~~~ve~ydp~~~~W~~~~ 392 (480)
T PHA02790 317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSL-L-KPRCNPAVASINNVIYVIGGHSE--TDTTTEYLLPNHDQWQFGP 392 (480)
T ss_pred ECCEEEEECCcCCCCceEEEECCCCeEEECCCC-C-CCCcccEEEEECCEEEEecCcCC--CCccEEEEeCCCCEEEeCC
Confidence 356777777754 4578888876544322111 1 11111112222455556665321 2245777887643222221
Q ss_pred ---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-CCCeEEEEEecCCCEEEEEcCC-----
Q psy10778 463 ---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTE----- 533 (556)
Q Consensus 463 ---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~D----- 533 (556)
....-.+++. -++ ++.+.|+ .+.+||..+.+-...-.... .... +++ .-++++.+.|+.+
T Consensus 393 ~m~~~r~~~~~~~---~~~---~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~-v~~~~IYviGG~~~~~~~ 461 (480)
T PHA02790 393 STYYPHYKSCALV---FGR---RLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELI-IVDNKLLLIGGFYRGSYI 461 (480)
T ss_pred CCCCccccceEEE---ECC---EEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEE-EECCEEEEECCcCCCccc
Confidence 1111122222 245 5666664 56788876654332211111 1112 222 3357777777754
Q ss_pred CcEEEEEcCCC
Q psy10778 534 GLVIIWESSSH 544 (556)
Q Consensus 534 g~V~vwdl~~~ 544 (556)
..+.+||..+.
T Consensus 462 ~~ve~Yd~~~~ 472 (480)
T PHA02790 462 DTIEVYNNRTY 472 (480)
T ss_pred ceEEEEECCCC
Confidence 35777887664
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=89.51 E-value=26 Score=35.65 Aligned_cols=74 Identities=12% Similarity=0.108 Sum_probs=46.4
Q ss_pred eecCCCeEEEEEeeCC-----CCCcceEEEEEeCCCeEEEEeCCCCeEEE---EecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 461 LASELRITSVTFSNAP-----EGVSQNVIVTGHSDGTIQLWSGYKLAHLL---TLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 461 ~~~~~~i~~i~~s~~p-----dg~~~~~l~tg~~dg~I~iwd~~~~~~~~---~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+.+...+..+.|.... .| .++++....+.|....+.....+. .+......+++.+++.|||.+.++.+.
T Consensus 249 ~~~~~ap~G~~~y~g~~fp~~~g---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 249 YPPHSAPTGIIFYRGSAFPEYRG---DLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp ETTT--EEEEEEE-SSSSGGGTT---EEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-T
T ss_pred ecCccccCceEEECCccCccccC---cEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECC
Confidence 3345677778877321 33 567777777788888776443222 222234458999999999999998888
Q ss_pred CCcEE
Q psy10778 533 EGLVI 537 (556)
Q Consensus 533 Dg~V~ 537 (556)
+|.|+
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88874
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain | Back alignment and domain information |
|---|
Probab=89.07 E-value=20 Score=37.07 Aligned_cols=142 Identities=10% Similarity=0.102 Sum_probs=79.3
Q ss_pred ccEEEEEEccCCCEEEEEc-----------CCC-cEEEEeCCC--CeE--EEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 376 ACVTDLYLCAGFSVAVSSS-----------EDG-TCLLWDINT--IGY--IREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs-----------~Dg-~I~iwdl~~--~~~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
.....|+|.++|++.++-. ..+ .|.+++-.. |+. ...+.. . -.....+++.+++ .++ ++
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~-~-l~~p~Gi~~~~~G-lyV-~~- 88 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAE-E-LSMVTGLAVAVGG-VYV-AT- 88 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeec-C-CCCccceeEecCC-EEE-eC-
Confidence 3456789999999877753 223 677775432 332 233332 2 3456889999887 444 43
Q ss_pred cCcCCCCeEEEEEeCC------c--EE-EEeec-----CCCeEEEEEeeCCCCCcceEEEEEeC----------------
Q psy10778 440 TTKTGGSILRLHTINA------Q--LI-TSLAS-----ELRITSVTFSNAPEGVSQNVIVTGHS---------------- 489 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~g------~--~i-~~~~~-----~~~i~~i~~s~~pdg~~~~~l~tg~~---------------- 489 (556)
.....++.|.++ + .+ ..+.. ......++|. |+| .+.++-+.
T Consensus 89 ----~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~g--pDG---~LYv~~G~~~~~~~~~~~~~~~~~ 159 (367)
T TIGR02604 89 ----PPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWG--PDG---WLYFNHGNTLASKVTRPGTSDESR 159 (367)
T ss_pred ----CCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceEC--CCC---CEEEecccCCCceeccCCCccCcc
Confidence 333333446543 1 11 11211 2347789999 888 55554331
Q ss_pred ---CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 490 ---DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 490 ---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
.|.|.-++...++ +..+..++ .....++|+++|.++++-..+
T Consensus 160 ~~~~g~i~r~~pdg~~-~e~~a~G~-rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 160 QGLGGGLFRYNPDGGK-LRVVAHGF-QNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred cccCceEEEEecCCCe-EEEEecCc-CCCccceECCCCCEEEEccCC
Confidence 1445555554333 33443243 345689999999887765433
|
All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs. |
| >KOG2280|consensus | Back alignment and domain information |
|---|
Probab=89.06 E-value=16 Score=40.49 Aligned_cols=200 Identities=14% Similarity=0.064 Sum_probs=98.2
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC-eEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP-TILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~-~~l~~h~~~V~~ 380 (556)
--.|+|++.. |.....+...|. .+..+.|+.+ ..|++...||+++||++-.... +.- .........|..
T Consensus 63 ~~~I~If~~s-G~lL~~~~w~~~-~lI~mgWs~~-eeLI~v~k~g~v~Vy~~~ge~i-------e~~svg~e~~~~~I~e 132 (829)
T KOG2280|consen 63 RPYIRIFNIS-GQLLGRILWKHG-ELIGMGWSDD-EELICVQKDGTVHVYGLLGEFI-------ESNSVGFESQMSDIVE 132 (829)
T ss_pred ceeEEEEecc-ccchHHHHhcCC-CeeeecccCC-ceEEEEeccceEEEeecchhhh-------cccccccccccCceeE
Confidence 3457777765 444444433444 7889999977 5677778999999999864310 000 001122233444
Q ss_pred EEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC--CeeEEEEeCCCC--eEEEEeecCcCCCCeEEEEEeC--
Q psy10778 381 LYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT--PVSHVTMSETNG--EIASVLQTTKTGGSILRLHTIN-- 454 (556)
Q Consensus 381 l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~--~V~~l~~sp~~~--~i~s~s~~~~~~d~~I~iwdi~-- 454 (556)
+.+..+|=.+.+ .+|.+.+-.-.....+++++... .. +-+|-+..+++. .++..-. ..--..++...
T Consensus 133 c~~f~~GVavlt--~~g~v~~i~~~~~~~~~~~~diP-~~~~~~~~Wt~~~~~~~~~~ll~v~----~~v~~~~~q~~~~ 205 (829)
T KOG2280|consen 133 CRFFHNGVAVLT--VSGQVILINGVEEPKLRKMPDIP-YNELPKSCWTVFQPHRQSTILLDVD----VAVGLHICQVEES 205 (829)
T ss_pred EEEecCceEEEe--cCCcEEEEcCCCcchhhhCCCCC-CccCCCcceeEecCCCcceeEEeec----hhhhhcccceecc
Confidence 555544433333 34555443322222233333201 11 112333322211 1111100 00000111111
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 455 -AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
++........+.+..+..| |+. ++|+.-...|.|.+-+....+.+..+......+...++|.-+
T Consensus 206 ~~q~~~~~~~~~~~~ki~VS--~n~---~~laLyt~~G~i~~vs~D~~~~lce~~~~~~~~p~qm~Wcgn 270 (829)
T KOG2280|consen 206 RVQLHALSWPNSSVVKISVS--PNR---RFLALYTETGKIWVVSIDLSQILCEFNCTDHDPPKQMAWCGN 270 (829)
T ss_pred cccccccCCCCceEEEEEEc--CCc---ceEEEEecCCcEEEEecchhhhhhccCCCCCCchHhceeecC
Confidence 1111111224677888888 777 899999999999998887777666665322233335555433
|
|
| >COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=88.90 E-value=20 Score=37.97 Aligned_cols=140 Identities=11% Similarity=0.065 Sum_probs=85.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC-------EEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH-------TLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~-------~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
++..|.....++-.|++.|+.+..+. .|.+ | -+.+.|+.+ .-++|-.+..|.-.|.+..+ .+ +
T Consensus 482 i~~dg~~~~kLykmDIErGkvveeW~-~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g--NK-i---- 551 (776)
T COG5167 482 IYLDGGERDKLYKMDIERGKVVEEWD-LKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG--NK-I---- 551 (776)
T ss_pred EEecCCCcccceeeecccceeeeEee-cCCc-c-eeecCCchhHHhcCccceEEeecccceEEecccccC--Cc-e----
Confidence 55667777788888888888887776 3443 3 566766421 22344444444333433321 01 0
Q ss_pred CeEeeCCCccEEEEEEc----cCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 368 PTILLGHSACVTDLYLC----AGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s----~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
. .....+-++--.|+ .+..+++.||..|.|++||--..+.-..+++ - ...|..+..+.+|+++++.|
T Consensus 552 -~-v~esKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~-l-G~aIk~idvta~Gk~ilaTC----- 622 (776)
T COG5167 552 -K-VVESKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPG-L-GDAIKHIDVTANGKHILATC----- 622 (776)
T ss_pred -e-eeeehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcc-c-ccceeeeEeecCCcEEEEee-----
Confidence 1 11111122222222 2456899999999999999553333334555 4 67899999999999999887
Q ss_pred CCCeEEEEEeC
Q psy10778 444 GGSILRLHTIN 454 (556)
Q Consensus 444 ~d~~I~iwdi~ 454 (556)
...+.+.|+.
T Consensus 623 -k~yllL~d~~ 632 (776)
T COG5167 623 -KNYLLLTDVP 632 (776)
T ss_pred -cceEEEEecc
Confidence 5688888874
|
|
| >PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3 | Back alignment and domain information |
|---|
Probab=88.61 E-value=33 Score=35.54 Aligned_cols=149 Identities=12% Similarity=0.201 Sum_probs=93.3
Q ss_pred cCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC----CCCe--EEEEeecCcCCCCeEEEEEeCC--c
Q psy10778 385 AGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE----TNGE--IASVLQTTKTGGSILRLHTINA--Q 456 (556)
Q Consensus 385 ~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp----~~~~--i~s~s~~~~~~d~~I~iwdi~g--~ 456 (556)
|..++++...+++-+.+||+. |+.++.+.. +.++.+.+-. .++. |++++... .....|++|.++. .
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~~----Gr~NNVDvrygf~l~g~~vDlavas~R~-~g~n~l~~f~id~~~g 139 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLPV----GRPNNVDVRYGFPLNGKTVDLAVASDRS-DGRNSLRLFRIDPDTG 139 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE-S----S-EEEEEEEEEEEETTEEEEEEEEEE-C-CCT-EEEEEEEETTTT
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeecC----CCcceeeeecceecCCceEEEEEEecCc-CCCCeEEEEEecCCCC
Confidence 344688888888999999998 777877754 3455444421 2332 55555311 0125799998862 2
Q ss_pred EEEEeec--------CCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCC---CC----eEEEEecCCCCCCeEEEEE
Q psy10778 457 LITSLAS--------ELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGY---KL----AHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 457 ~i~~~~~--------~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~---~~----~~~~~~~~~h~~~V~~l~~ 520 (556)
.+..+.. ...+..+|+...+ +|. -+.++...+|.+..|.+. .+ ++++++.. .+.+..++.
T Consensus 140 ~L~~v~~~~~p~~~~~~e~yGlcly~~~~~g~--~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~--~sQ~EGCVV 215 (381)
T PF02333_consen 140 ELTDVTDPAAPIATDLSEPYGLCLYRSPSTGA--LYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKV--GSQPEGCVV 215 (381)
T ss_dssp EEEE-CBTTC-EE-SSSSEEEEEEEE-TTT----EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE---SS-EEEEEE
T ss_pred cceEcCCCCcccccccccceeeEEeecCCCCc--EEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecC--CCcceEEEE
Confidence 3443321 1346788886434 342 466778888998888763 23 56888873 468999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
......|+.+-++.-|.-|+.+-
T Consensus 216 DDe~g~LYvgEE~~GIW~y~Aep 238 (381)
T PF02333_consen 216 DDETGRLYVGEEDVGIWRYDAEP 238 (381)
T ss_dssp ETTTTEEEEEETTTEEEEEESSC
T ss_pred ecccCCEEEecCccEEEEEecCC
Confidence 99889999999998887777753
|
1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A. |
| >KOG2247|consensus | Back alignment and domain information |
|---|
Probab=88.26 E-value=0.063 Score=55.48 Aligned_cols=142 Identities=9% Similarity=0.089 Sum_probs=100.0
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 379 TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
....|-+++.-++.++.+..+..||-. ++....+.. .+....++|+-++..++.... ..+.+.+||++.+..
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~---tg~aldm~wDkegdvlavlAe----k~~piylwd~n~eyt 109 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNP---TGKALDMAWDKEGDVLAVLAE----KTGPIYLWDVNSEYT 109 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhh-cceecccCC---chhHhhhhhccccchhhhhhh----cCCCeeechhhhhhH
Confidence 345677887778888889999999955 455555554 567778889888877766553 678999999985544
Q ss_pred EEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCc
Q psy10778 459 TSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGL 535 (556)
Q Consensus 459 ~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 535 (556)
..+.. ...-.=+.|+ +.+ ..++.|...|.+.+++..+.+...... .|..+++++++.+.+..+ .++.|..
T Consensus 110 qqLE~gg~~s~sll~ws--Kg~---~el~ig~~~gn~viynhgtsR~iiv~G-kh~RRgtq~av~lEd~vi-l~dcd~~ 181 (615)
T KOG2247|consen 110 QQLESGGTSSKSLLAWS--KGT---PELVIGNNAGNIVIYNHGTSRRIIVMG-KHQRRGTQIAVTLEDYVI-LCDCDNT 181 (615)
T ss_pred HHHhccCcchHHHHhhc--cCC---ccccccccccceEEEeccchhhhhhhc-ccccceeEEEecccceee-ecCcHHH
Confidence 44422 1121226777 566 678888899999999987666554443 488999999999987544 4444443
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=88.22 E-value=27 Score=34.13 Aligned_cols=181 Identities=10% Similarity=0.028 Sum_probs=103.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccCCCeEeeC-CCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 325 ATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCKPPTILLG-HSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.-.-.+.+..+|.++-+.+.-| .|+.+|+.++. ......- ..----.++.. ++++..-.=+++...+
T Consensus 45 aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~---------~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f~ 114 (264)
T PF05096_consen 45 AFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK---------VLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGFV 114 (264)
T ss_dssp -EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS---------EEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEEE
T ss_pred ccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc---------EEEEEECCccccceeEEEE-CCEEEEEEecCCeEEE
Confidence 3445677767777777777666 57777777651 1111110 11111123332 2223333346899999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec------CCCeEEEEEee
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS------ELRITSVTFSN 474 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~------~~~i~~i~~s~ 474 (556)
||..+.+.+.++.- .+.-..++ .++..++... ....|+.+|.. -+....+.. -..++-+.|-
T Consensus 115 yd~~tl~~~~~~~y---~~EGWGLt--~dg~~Li~SD-----GS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i- 183 (264)
T PF05096_consen 115 YDPNTLKKIGTFPY---PGEGWGLT--SDGKRLIMSD-----GSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI- 183 (264)
T ss_dssp EETTTTEEEEEEE----SSS--EEE--ECSSCEEEE------SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-
T ss_pred EccccceEEEEEec---CCcceEEE--cCCCEEEEEC-----CccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-
Confidence 99999999988876 45556666 4566776665 56789999875 444544431 2356667776
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---------C-----CCCCeEEEEEecCCCE-EEEEc
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---------N-----VALPVIAVTYSCDSQH-LYASN 531 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---------~-----h~~~V~~l~~s~dg~~-l~sgs 531 (556)
+| .+.|=--....|..-|..+|+.+..+.. . ...-...||+.|+... ++||-
T Consensus 184 --~G---~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTGK 250 (264)
T PF05096_consen 184 --NG---KIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTGK 250 (264)
T ss_dssp --TT---EEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEET
T ss_pred --cC---EEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEeC
Confidence 56 5666666677788888888888776642 0 1245899999987654 45553
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF14761 HPS3_N: Hermansky-Pudlak syndrome 3 | Back alignment and domain information |
|---|
Probab=88.12 E-value=19 Score=33.90 Aligned_cols=122 Identities=11% Similarity=0.031 Sum_probs=72.1
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---C---cEEEEE-eeeccCcccccccCCCeEee
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---G---NILVYE-YELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g---~I~vwd-~~~~~~~~~~~~~~~~~~l~ 372 (556)
...+.|.+|++..........+.--+.|..+.++..|++|+|-=++ . .+|+|- ++.. .
T Consensus 35 ~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~---------------~ 99 (215)
T PF14761_consen 35 ASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQ---------------K 99 (215)
T ss_pred cCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhh---------------c
Confidence 5567799999985555444444566899999999999999996322 2 455542 2211 1
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.-..+|.. ..- |. -++++..+.. ...-.+-.++. ..++.+++..|-.+.|+.|+ ++.+.+|.
T Consensus 100 ~~~~~v~v-Ria--G~-~v~~~~~~~~-----~~qleiiElPl---~~~p~ciaCC~~tG~LlVg~------~~~l~lf~ 161 (215)
T PF14761_consen 100 EENSPVRV-RIA--GH-RVTPSFNESS-----KDQLEIIELPL---SEPPLCIACCPVTGNLLVGC------GNKLVLFT 161 (215)
T ss_pred ccCCcEEE-EEc--cc-ccccCCCCcc-----ccceEEEEecC---CCCCCEEEecCCCCCEEEEc------CCEEEEEE
Confidence 11112211 000 10 1111211111 11122344444 67899999999999999886 77999998
Q ss_pred eC
Q psy10778 453 IN 454 (556)
Q Consensus 453 i~ 454 (556)
+.
T Consensus 162 l~ 163 (215)
T PF14761_consen 162 LK 163 (215)
T ss_pred EE
Confidence 85
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=88.01 E-value=3.1 Score=39.73 Aligned_cols=64 Identities=8% Similarity=0.096 Sum_probs=47.5
Q ss_pred EccCCCEEEEEcCCCcEEEEeCCCCeEEEEe-------C-------CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 383 LCAGFSVAVSSSEDGTCLLWDINTIGYIREI-------P-------CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 383 ~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l-------~-------~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
+...+++++..+.+|.+++||+.+++.+..- . . . ...|..+.++.+|.-|++.+ +|..
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~-~-~~~i~~~~lt~~G~PiV~ls------ng~~ 89 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKS-S-SPNITSCSLTSNGVPIVTLS------NGDS 89 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCC-C-CCcEEEEEEcCCCCEEEEEe------CCCE
Confidence 3445778999999999999999988754321 1 1 2 46788888888877777764 5678
Q ss_pred EEEEeC
Q psy10778 449 RLHTIN 454 (556)
Q Consensus 449 ~iwdi~ 454 (556)
+.|+.+
T Consensus 90 y~y~~~ 95 (219)
T PF07569_consen 90 YSYSPD 95 (219)
T ss_pred EEeccc
Confidence 888887
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PHA02790 Kelch-like protein; Provisional | Back alignment and domain information |
|---|
Probab=87.72 E-value=15 Score=39.51 Aligned_cols=105 Identities=9% Similarity=-0.165 Sum_probs=49.3
Q ss_pred eEEeccCC-----CeEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECD-----NLIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~D-----g~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~ 366 (556)
+++.|+.+ .++..||..++.....-... .......+ .-++...+.||.++ .+..|+...+.. .
T Consensus 274 lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v--~~~~~iYviGG~~~~~sve~ydp~~n~W-------~ 344 (480)
T PHA02790 274 VYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV--PANNKLYVVGGLPNPTSVERWFHGDAAW-------V 344 (480)
T ss_pred EEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE--EECCEEEEECCcCCCCceEEEECCCCeE-------E
Confidence 45556544 24666777665432221111 11111122 23677778887643 466666543211 1
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCC---cEEEEeCCCCeEE
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDG---TCLLWDINTIGYI 410 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iwdl~~~~~v 410 (556)
.+..+......... ..-+|++.+.|+.++ ++..||..+.+..
T Consensus 345 ~~~~l~~~r~~~~~--~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~ 389 (480)
T PHA02790 345 NMPSLLKPRCNPAV--ASINNVIYVIGGHSETDTTTEYLLPNHDQWQ 389 (480)
T ss_pred ECCCCCCCCcccEE--EEECCEEEEecCcCCCCccEEEEeCCCCEEE
Confidence 11112111111111 223577777777553 4778898876543
|
|
| >PLN00033 photosystem II stability/assembly factor; Provisional | Back alignment and domain information |
|---|
Probab=87.51 E-value=40 Score=35.31 Aligned_cols=146 Identities=11% Similarity=0.101 Sum_probs=82.6
Q ss_pred EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-
Q psy10778 378 VTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ- 456 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~- 456 (556)
...+..++++.+++.+..-..++-||--. ..-..+..+. ...+..+.+.+++..++++ .+|.+..-+-.|+
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~-~~W~~~~~~~-~~~l~~v~~~~dg~l~l~g------~~G~l~~S~d~G~~ 312 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ-PYWQPHNRAS-ARRIQNMGWRADGGLWLLT------RGGGLYVSKGTGLT 312 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC-cceEEecCCC-ccceeeeeEcCCCCEEEEe------CCceEEEecCCCCc
Confidence 45566777877766655433333344321 1112222212 5678999999998887766 4666554433343
Q ss_pred ----EEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCCeEEEEEecCCCEE
Q psy10778 457 ----LITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN--TNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 457 ----~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~dg~~l 527 (556)
....... ...+.++.+. +++ ..++ ++.+|.+.... ..++.-.... ..-....+.+.|.++++-+
T Consensus 313 ~~~~~f~~~~~~~~~~~l~~v~~~--~d~---~~~a-~G~~G~v~~s~-D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~ 385 (398)
T PLN00033 313 EEDFDFEEADIKSRGFGILDVGYR--SKK---EAWA-AGGSGILLRST-DGGKSWKRDKGADNIAANLYSVKFFDDKKGF 385 (398)
T ss_pred ccccceeecccCCCCcceEEEEEc--CCC---cEEE-EECCCcEEEeC-CCCcceeEccccCCCCcceeEEEEcCCCceE
Confidence 2233222 2358889888 676 4444 44567666654 3444323322 1234678899998776665
Q ss_pred EEEcCCCcEEEE
Q psy10778 528 YASNTEGLVIIW 539 (556)
Q Consensus 528 ~sgs~Dg~V~vw 539 (556)
++ +.+|.|.-|
T Consensus 386 ~~-G~~G~il~~ 396 (398)
T PLN00033 386 VL-GNDGVLLRY 396 (398)
T ss_pred EE-eCCcEEEEe
Confidence 54 557777654
|
|
| >TIGR01063 gyrA DNA gyrase, A subunit | Back alignment and domain information |
|---|
Probab=87.50 E-value=61 Score=37.38 Aligned_cols=236 Identities=9% Similarity=-0.029 Sum_probs=122.9
Q ss_pred eEEeccCCCeEEEEeCCCC-------CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKEL-------PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-------~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.-+.+|.|+--...+- ...........+.+..+..+.....++..+.+|.+.......-+..+......+
T Consensus 498 ~~vllS~~GyIKri~~~~~~~~~~~~~g~s~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~~~~IP~~~r~~~G~~ 577 (800)
T TIGR01063 498 VVVTLSHNGYVKRVPVSAYRLQKRGGKGVSGADMKDDDFIEQLLVASTHDYLLFFTNRGKVYWLKVYQIPEASRTAKGKP 577 (800)
T ss_pred EEEEEcCCCEEEecchhhhhhhcccCcCccccccCCCCeeEEEEEecCCCeEEEEeCCCcEEEEEhhhCcCCCcCCCCcC
Confidence 5666788888887654321 111122222345566655556667777777788876654422111110000011
Q ss_pred C---eEeeCCCccEEEEEEc--cCCCEEEEEcCCCcEEEEeCCCCeE-------EEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 368 P---TILLGHSACVTDLYLC--AGFSVAVSSSEDGTCLLWDINTIGY-------IREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 368 ~---~~l~~h~~~V~~l~~s--~~~~~l~sgs~Dg~I~iwdl~~~~~-------v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
+ ..+..-..-|.++... .+...++..+.+|.++-.++..... ...+.. ...+..+........++
T Consensus 578 i~~ll~L~~~E~Iv~~i~~~~~~~~~~lvliT~~GyiKRi~l~~~~~~~r~G~~aiklke---~D~lv~v~~~~~~d~ll 654 (800)
T TIGR01063 578 IVNLLPLQPDERITAILSVKEFDDGLYLFFATKNGVVKKTSLTEFSNIRSNGIIAIKLDD---GDELISVRLTSGDDEVM 654 (800)
T ss_pred HHHhccCCCCCeEEEEEEeccCCCCCEEEEEeCCCEEEEEEhHHhhhhccCCcccccCCC---CCEEEEEEEeCCCCEEE
Confidence 1 1222223334455543 3456889999999999887754221 112222 33444444444445566
Q ss_pred EEeecCcCCCCeEEEEEeC----------CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC------
Q psy10778 436 SVLQTTKTGGSILRLHTIN----------AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY------ 499 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~----------g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~------ 499 (556)
..+ ..|.+..+.+. |.....+.....|.++... .+. ..++..+..|.++...+.
T Consensus 655 l~T-----s~Gr~~r~~v~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v--~~~---~~ll~vT~~G~~Kr~~l~e~~~~~ 724 (800)
T TIGR01063 655 LGS-----KNGKAVRFPEEDVRPMGRAARGVRGIKLKNEDFVVSLLVV--SEE---SYLLIVTENGYGKRTSIEEYRETS 724 (800)
T ss_pred EEE-----CCCcEEEEEhhhcCCcCCCCCCeecccCCCCCEEEEEEEe--ccc---cEEEEEecCCcEEEEEHHHccccC
Confidence 565 56665555442 2222223334556665544 333 568888888988877542
Q ss_pred -CCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 500 -KLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 500 -~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.++-+..+.. .....+..+....+...++..+.+|.+..+...+
T Consensus 725 R~~kGv~~ikl~~~~d~lv~~~~v~~~~~v~liT~~G~~lrf~~~e 770 (800)
T TIGR01063 725 RGGKGVKSIKITDRNGQVVGAIAVDDDDELMLITSAGKLIRTSVQD 770 (800)
T ss_pred CCCcceEEEEccCCCCeEEEEEEecCCCeEEEEecCCeEEEeeHhh
Confidence 1223333321 2224555554444445577778888887777654
|
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. |
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=87.07 E-value=25 Score=34.52 Aligned_cols=147 Identities=10% Similarity=0.108 Sum_probs=88.9
Q ss_pred EEEEccCCC-EEEEEcCCCc-EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC--
Q psy10778 380 DLYLCAGFS-VAVSSSEDGT-CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-- 455 (556)
Q Consensus 380 ~l~~s~~~~-~l~sgs~Dg~-I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-- 455 (556)
.|+++|... -++.+-.-|+ ..++|....+...++.......-.-.=.|||||.++.+.-.+-....|.|-+||.+.
T Consensus 72 gi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~f 151 (366)
T COG3490 72 GIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGF 151 (366)
T ss_pred CeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEeccccc
Confidence 477777654 3455555555 567888877666555431001112234689999998877543333568899999973
Q ss_pred cEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCC------------------CeEEEEeCCCCeEEEEecC---CCCC
Q psy10778 456 QLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSD------------------GTIQLWSGYKLAHLLTLNT---NVAL 513 (556)
Q Consensus 456 ~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~d------------------g~I~iwd~~~~~~~~~~~~---~h~~ 513 (556)
+.+.++. +.-....+.+. +|| +.++.+... -.+.+.|..+|+++.+... .+.-
T Consensus 152 qrvgE~~t~GiGpHev~lm--~DG---rtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~l 226 (366)
T COG3490 152 QRVGEFSTHGIGPHEVTLM--ADG---RTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQL 226 (366)
T ss_pred ceecccccCCcCcceeEEe--cCC---cEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhc
Confidence 3444443 44466778888 899 777765421 1234455556665544432 2346
Q ss_pred CeEEEEEecCCCEEEEEc
Q psy10778 514 PVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs 531 (556)
.|+.++..+||+.++.+-
T Consensus 227 SiRHld~g~dgtvwfgcQ 244 (366)
T COG3490 227 SIRHLDIGRDGTVWFGCQ 244 (366)
T ss_pred ceeeeeeCCCCcEEEEEE
Confidence 688888888887766543
|
|
| >KOG2377|consensus | Back alignment and domain information |
|---|
Probab=86.56 E-value=13 Score=38.83 Aligned_cols=112 Identities=11% Similarity=0.049 Sum_probs=74.6
Q ss_pred eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC
Q psy10778 318 VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397 (556)
Q Consensus 318 ~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg 397 (556)
.+.....++|.++.|++|.+.||+--.|.+|.+++...... +. ......+.....|.+..|+.. .-++..+..|
T Consensus 60 Sfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~--~l---~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G 133 (657)
T KOG2377|consen 60 SFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNS--QL---EYTQECKTKNANILGFCWTSS-TEIAFITDQG 133 (657)
T ss_pred eeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCch--hh---HHHHHhccCcceeEEEEEecC-eeEEEEecCC
Confidence 33345567999999999999999999999999998754311 10 112233344556889999876 3455444444
Q ss_pred cEEEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 398 TCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 398 ~I~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
+-+|.... .+.+|..+. + ...|.-..|.++.+.++.++
T Consensus 134 -~e~y~v~pekrslRlVks-~-~~nvnWy~yc~et~v~LL~t 172 (657)
T KOG2377|consen 134 -IEFYQVLPEKRSLRLVKS-H-NLNVNWYMYCPETAVILLST 172 (657)
T ss_pred -eEEEEEchhhhhhhhhhh-c-ccCccEEEEccccceEeeec
Confidence 55554433 234566666 6 77788888998887766655
|
|
| >KOG1900|consensus | Back alignment and domain information |
|---|
Probab=86.37 E-value=8 Score=45.32 Aligned_cols=143 Identities=15% Similarity=0.293 Sum_probs=86.9
Q ss_pred cCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe--------CCCCeEEEEeecCcCCCCeEEEEEeC-----Cc---E
Q psy10778 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS--------ETNGEIASVLQTTKTGGSILRLHTIN-----AQ---L 457 (556)
Q Consensus 394 s~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s--------p~~~~i~s~s~~~~~~d~~I~iwdi~-----g~---~ 457 (556)
+-|..+.+|+.+++.....+.+ - ...|..|..- |.=++++..+ .--.|.++-+. +. .
T Consensus 96 TiDn~L~lWny~~~~e~~~~d~-~-shtIl~V~LvkPkpgvFv~~IqhlLvva-----T~~ei~ilgV~~~~~~~~~~~f 168 (1311)
T KOG1900|consen 96 TIDNNLFLWNYESDNELAEYDG-L-SHTILKVGLVKPKPGVFVPEIQHLLVVA-----TPVEIVILGVSFDEFTGELSIF 168 (1311)
T ss_pred EeCCeEEEEEcCCCCccccccc-h-hhhheeeeeecCCCCcchhhhheeEEec-----ccceEEEEEEEeccccCccccc
Confidence 4588899999998766666655 3 4455554432 2223344333 34566666542 11 1
Q ss_pred EEEe--e-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC-------CCCe--------------EE---EEecCC
Q psy10778 458 ITSL--A-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG-------YKLA--------------HL---LTLNTN 510 (556)
Q Consensus 458 i~~~--~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~-------~~~~--------------~~---~~~~~~ 510 (556)
...+ . .+..|+|+... .+| +++.+|-. | .+|.+ |.++ .+ ..+...
T Consensus 169 ~~~~~i~~dg~~V~~I~~t--~nG---RIF~~G~d-g--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~ 240 (1311)
T KOG1900|consen 169 NTSFKISVDGVSVNCITYT--ENG---RIFFAGRD-G--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGS 240 (1311)
T ss_pred ccceeeecCCceEEEEEec--cCC---cEEEeecC-C--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCC
Confidence 1112 1 24578888866 788 67766654 4 44543 1111 11 111114
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC-CCCcCeee
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSS-HNRTPKFL 551 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~-~~~~~~~~ 551 (556)
+..+|..++.......+++-++.|.|.+|++.. +...+++.
T Consensus 241 ~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~~G~~~~r~~ 282 (1311)
T KOG1900|consen 241 SKDPIRQITIDNSRNILYVLSEKGTVSAYDIGGNGLGGPRFV 282 (1311)
T ss_pred CCCcceeeEeccccceeeeeccCceEEEEEccCCCccceeee
Confidence 567999999999889999999999999999987 44444443
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=86.32 E-value=41 Score=34.27 Aligned_cols=151 Identities=10% Similarity=0.051 Sum_probs=82.6
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...+.++.+.+++.++++|. .|.+..- .+.+ +. .-...-..-...++++.+.++++.++.| ..|.+.+=+
T Consensus 172 ~g~~~~i~~~~~g~~v~~g~-~G~i~~s-~~~g---g~----tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s 241 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAVSS-RGNFYST-WEPG---QT----AWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFND 241 (334)
T ss_pred cceEEEEEECCCCeEEEEeC-CceEEEE-cCCC---CC----eEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEcc
Confidence 45788999999887666655 4655421 1111 00 0001112334678899999998876665 457665333
Q ss_pred CCCCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee----cCCCeEEEEEeeCC
Q psy10778 404 INTIGYIREIPCV--DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA----SELRITSVTFSNAP 476 (556)
Q Consensus 404 l~~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~----~~~~i~~i~~s~~p 476 (556)
...+..-.....+ .....+..+++.+++..++++ .+|.+.. ..+ |+.-.... .......+.+. .
T Consensus 242 ~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G------~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~--~ 312 (334)
T PRK13684 242 PDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG------GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFL--D 312 (334)
T ss_pred CCCCCccccccCCccccccceeeEEEcCCCCEEEEc------CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEe--C
Confidence 4444433322220 002457888899877665555 5665553 344 44333322 12357777777 5
Q ss_pred CCCcceEEEEEeCCCeEEEEe
Q psy10778 477 EGVSQNVIVTGHSDGTIQLWS 497 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iwd 497 (556)
++ +.+++| ..|.|--|+
T Consensus 313 ~~---~~~~~G-~~G~il~~~ 329 (334)
T PRK13684 313 PE---KGFVLG-QRGVLLRYV 329 (334)
T ss_pred CC---ceEEEC-CCceEEEec
Confidence 55 455555 467776665
|
|
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=86.08 E-value=2.3 Score=28.93 Aligned_cols=31 Identities=23% Similarity=0.181 Sum_probs=25.9
Q ss_pred CCeEEEEEecCCC---EEEEEcCCCcEEEEEcCC
Q psy10778 513 LPVIAVTYSCDSQ---HLYASNTEGLVIIWESSS 543 (556)
Q Consensus 513 ~~V~~l~~s~dg~---~l~sgs~Dg~V~vwdl~~ 543 (556)
+.|+++.|||+.. +|+.+-.-|.|.|+|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998554 788777789999999995
|
It contains a characteristic DLL sequence motif. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=85.83 E-value=18 Score=40.95 Aligned_cols=82 Identities=20% Similarity=0.116 Sum_probs=53.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeec-cCcc------cccccCCC-----eEeeCCCccEEEEEEccC---CCE
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELN-ASTN------KIEFCKPP-----TILLGHSACVTDLYLCAG---FSV 389 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~-~~~~------~~~~~~~~-----~~l~~h~~~V~~l~~s~~---~~~ 389 (556)
-.|..+..+++|+.++..|..|.+ |-.+... +..+ ....++.. .....+...|..+.|+|. +..
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~-V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVV-VLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEE-EEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 468899999999999999876544 4444321 1011 11111100 011245568999999996 468
Q ss_pred EEEEcCCCcEEEEeCCCC
Q psy10778 390 AVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 390 l~sgs~Dg~I~iwdl~~~ 407 (556)
|+.-..|+++++||+...
T Consensus 164 l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDP 181 (717)
T ss_pred EEEEecCCEEEEEecCCC
Confidence 888899999999999754
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins | Back alignment and domain information |
|---|
Probab=85.61 E-value=3.4 Score=28.11 Aligned_cols=32 Identities=9% Similarity=0.039 Sum_probs=26.4
Q ss_pred ccEEEEEEccCC---CEEEEEcCCCcEEEEeCCCC
Q psy10778 376 ACVTDLYLCAGF---SVAVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 376 ~~V~~l~~s~~~---~~l~sgs~Dg~I~iwdl~~~ 407 (556)
+.|.++.|||+. .+|+.+-.-|.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 468899999854 48888888899999999953
|
It contains a characteristic DLL sequence motif. |
| >KOG4499|consensus | Back alignment and domain information |
|---|
Probab=84.94 E-value=37 Score=32.46 Aligned_cols=134 Identities=13% Similarity=0.066 Sum_probs=82.1
Q ss_pred CccEEEEEEccCCCEEEEEcCC---------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSED---------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~D---------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
..+.+.-..+|+|++.+-.-.| |.++.|-.. ..+..+.. . -.--+.++|+.+.+.+....+ .+
T Consensus 108 knR~NDgkvdP~Gryy~GtMad~~~~le~~~g~Ly~~~~~--h~v~~i~~-~-v~IsNgl~Wd~d~K~fY~iDs----ln 179 (310)
T KOG4499|consen 108 KNRLNDGKVDPDGRYYGGTMADFGDDLEPIGGELYSWLAG--HQVELIWN-C-VGISNGLAWDSDAKKFYYIDS----LN 179 (310)
T ss_pred hcccccCccCCCCceeeeeeccccccccccccEEEEeccC--CCceeeeh-h-ccCCccccccccCcEEEEEcc----Cc
Confidence 3455666778999874322222 334444332 11222221 1 223357889988777766642 56
Q ss_pred CeEEEEEeC---Cc-----EEEEeec-----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 446 SILRLHTIN---AQ-----LITSLAS-----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 446 ~~I~iwdi~---g~-----~i~~~~~-----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
-+|.-||.+ |. .+..++. +-..-.++.. .+| ++.++.-..|+|...|..+|+.+.++.. ..
T Consensus 180 ~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID--~eG---~L~Va~~ng~~V~~~dp~tGK~L~eikl-Pt 253 (310)
T KOG4499|consen 180 YEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTID--TEG---NLYVATFNGGTVQKVDPTTGKILLEIKL-PT 253 (310)
T ss_pred eEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEc--cCC---cEEEEEecCcEEEEECCCCCcEEEEEEc-CC
Confidence 677778843 32 2222221 1122345555 677 7888888899999999999999999984 57
Q ss_pred CCeEEEEEec
Q psy10778 513 LPVIAVTYSC 522 (556)
Q Consensus 513 ~~V~~l~~s~ 522 (556)
..|++++|--
T Consensus 254 ~qitsccFgG 263 (310)
T KOG4499|consen 254 PQITSCCFGG 263 (310)
T ss_pred CceEEEEecC
Confidence 8899999974
|
|
| >KOG1898|consensus | Back alignment and domain information |
|---|
Probab=84.63 E-value=86 Score=36.42 Aligned_cols=106 Identities=17% Similarity=0.192 Sum_probs=66.4
Q ss_pred EEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC-
Q psy10778 424 HVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG- 498 (556)
Q Consensus 424 ~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~- 498 (556)
-.|+.|-.+++++| -+..+++||+- .++++... ....|..+++. + ..+++|...-.|.++..
T Consensus 938 v~Ai~~f~~~~Lag------vG~~l~~YdlG~K~lLRk~e~k~~p~~Is~iqt~----~---~RI~VgD~qeSV~~~~y~ 1004 (1205)
T KOG1898|consen 938 VGAICPFQGRVLAG------VGRFLRLYDLGKKKLLRKCELKFIPNRISSIQTY----G---ARIVVGDIQESVHFVRYR 1004 (1205)
T ss_pred ceEEeccCCEEEEe------cccEEEEeeCChHHHHhhhhhccCceEEEEEeec----c---eEEEEeeccceEEEEEEe
Confidence 35667777777776 57899999995 44443332 25678888876 3 46777776555554433
Q ss_pred CCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 499 YKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 499 ~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..+.+..+.. .-...|+++.+-. ...++.++.=|.+.+-.++.
T Consensus 1005 ~~~n~l~~fadD~~pR~Vt~~~~lD-~~tvagaDrfGNi~~vR~P~ 1049 (1205)
T KOG1898|consen 1005 REDNQLIVFADDPVPRHVTALELLD-YDTVAGADRFGNIAVVRIPP 1049 (1205)
T ss_pred cCCCeEEEEeCCCccceeeEEEEec-CCceeeccccCcEEEEECCC
Confidence 23444444442 3345677776654 45677777778888777654
|
|
| >PF05935 Arylsulfotrans: Arylsulfotransferase (ASST); InterPro: IPR010262 This family consists of several bacterial arylsulphotransferase proteins | Back alignment and domain information |
|---|
Probab=84.28 E-value=39 Score=36.39 Aligned_cols=137 Identities=13% Similarity=0.097 Sum_probs=69.8
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeecCCCe----EEE
Q psy10778 395 EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLASELRI----TSV 470 (556)
Q Consensus 395 ~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~~~~i----~~i 470 (556)
..+...+.|.+ |.....+.. . ......+...++|.+++.. ...++.+|..|+.+........- ..+
T Consensus 126 ~~~~~~~iD~~-G~Vrw~~~~-~-~~~~~~~~~l~nG~ll~~~-------~~~~~e~D~~G~v~~~~~l~~~~~~~HHD~ 195 (477)
T PF05935_consen 126 SSSYTYLIDNN-GDVRWYLPL-D-SGSDNSFKQLPNGNLLIGS-------GNRLYEIDLLGKVIWEYDLPGGYYDFHHDI 195 (477)
T ss_dssp BEEEEEEEETT-S-EEEEE-G-G-GT--SSEEE-TTS-EEEEE-------BTEEEEE-TT--EEEEEE--TTEE-B-S-E
T ss_pred CCceEEEECCC-ccEEEEEcc-C-ccccceeeEcCCCCEEEec-------CCceEEEcCCCCEEEeeecCCccccccccc
Confidence 34556666654 444444433 1 1111115666777666543 37899999999988877654432 455
Q ss_pred EEeeCCCCCcceEEEEEeC-------------CCeEEEEeCCCCeEEEEecC-CC-----C-------------------
Q psy10778 471 TFSNAPEGVSQNVIVTGHS-------------DGTIQLWSGYKLAHLLTLNT-NV-----A------------------- 512 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~-------------dg~I~iwd~~~~~~~~~~~~-~h-----~------------------- 512 (556)
... |+| ++|+.+.. .-.|..+| .+|+.+..+.. .| .
T Consensus 196 ~~l--~nG---n~L~l~~~~~~~~~~~~~~~~~D~Ivevd-~tG~vv~~wd~~d~ld~~~~~~~~~~~~~~~~~~~~~~D 269 (477)
T PF05935_consen 196 DEL--PNG---NLLILASETKYVDEDKDVDTVEDVIVEVD-PTGEVVWEWDFFDHLDPYRDTVLKPYPYGDISGSGGGRD 269 (477)
T ss_dssp EE---TTS----EEEEEEETTEE-TS-EE---S-EEEEE--TTS-EEEEEEGGGTS-TT--TTGGT--SSSSS-SSTTSB
T ss_pred EEC--CCC---CEEEEEeecccccCCCCccEecCEEEEEC-CCCCEEEEEehHHhCCcccccccccccccccccCCCCCC
Confidence 555 888 88887772 12355556 67776665432 11 0
Q ss_pred -CCeEEEEEec-CCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 513 -LPVIAVTYSC-DSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 513 -~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
-.+.++.+.+ ++.+++++-.-..|...|.++++..
T Consensus 270 W~H~Nsi~yd~~dd~iivSsR~~s~V~~Id~~t~~i~ 306 (477)
T PF05935_consen 270 WLHINSIDYDPSDDSIIVSSRHQSAVIKIDYRTGKIK 306 (477)
T ss_dssp S--EEEEEEETTTTEEEEEETTT-EEEEEE-TTS-EE
T ss_pred ccccCccEEeCCCCeEEEEcCcceEEEEEECCCCcEE
Confidence 2378999998 5666666655568888886665443
|
Arylsulphotransferase (ASST) transfers a sulphate group from phenolic sulphate esters to a phenolic acceptor substrate [].; PDB: 3ETT_B 3ELQ_A 3ETS_A. |
| >TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118 | Back alignment and domain information |
|---|
Probab=83.35 E-value=51 Score=32.86 Aligned_cols=175 Identities=14% Similarity=0.118 Sum_probs=94.5
Q ss_pred EEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-CCCccE-EEEEEcc--CCCEEEEEc-CCCcEEEEeCCCCeEEEE
Q psy10778 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSACV-TDLYLCA--GFSVAVSSS-EDGTCLLWDINTIGYIRE 412 (556)
Q Consensus 338 ~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V-~~l~~s~--~~~~l~sgs-~Dg~I~iwdl~~~~~v~~ 412 (556)
.++.+++||+|.=|.......... .....+. +....| ..+++.. .+..|..+. ..++|.|+|-.= ..+..
T Consensus 102 ~Fif~tEdGTisaW~p~v~~t~~~----~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~f-~~~~~ 176 (336)
T TIGR03118 102 RFLFVTEDGTLSGWAPALGTTRMT----RAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGSF-RPPPL 176 (336)
T ss_pred eEEEEeCCceEEeecCcCCccccc----ccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCcc-ccccC
Confidence 367789999999998654311000 0001111 112333 3455543 345555443 578899998542 22111
Q ss_pred ---eCCC---CCCCCeeEEEEeCCCCeEEEEeecC--------cCCCCeEEEEEeCCcEEEEeecCC---CeEEEEEeeC
Q psy10778 413 ---IPCV---DPNTPVSHVTMSETNGEIASVLQTT--------KTGGSILRLHTINAQLITSLASEL---RITSVTFSNA 475 (556)
Q Consensus 413 ---l~~~---h~~~~V~~l~~sp~~~~i~s~s~~~--------~~~d~~I~iwdi~g~~i~~~~~~~---~i~~i~~s~~ 475 (556)
+..+ ..-.+-.-..+ .+...++-.... +..-|.|-+||.+|++++++.+.+ ....|+..|.
T Consensus 177 ~g~F~DP~iPagyAPFnIqni--g~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as~g~LNaPWG~a~APa 254 (336)
T TIGR03118 177 PGSFIDPALPAGYAPFNVQNL--GGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVASSGRLNAPWGLAIAPE 254 (336)
T ss_pred CCCccCCCCCCCCCCcceEEE--CCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEeccCCcccCCceeeeChh
Confidence 1100 00011111111 123333332211 114579999999999999996654 3456666532
Q ss_pred ----CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----CCCeEEEEEec
Q psy10778 476 ----PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-----ALPVIAVTYSC 522 (556)
Q Consensus 476 ----pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-----~~~V~~l~~s~ 522 (556)
..| .+|+---.||+|..+|..+++.+..+.... ...++.++|..
T Consensus 255 ~FG~~sg---~lLVGNFGDG~InaFD~~sG~~~g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 255 SFGSLSG---ALLVGNFGDGTINAYDPQSGAQLGQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred hhCCCCC---CeEEeecCCceeEEecCCCCceeeeecCCCCCeEEecCeEEeeeCC
Confidence 123 566666689999999999999888877422 23457777765
|
This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus. |
| >KOG4460|consensus | Back alignment and domain information |
|---|
Probab=83.08 E-value=27 Score=37.19 Aligned_cols=28 Identities=14% Similarity=-0.088 Sum_probs=22.3
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
-.|..+..++.|..++-++.+|.+.+.=
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMeL 131 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVMEL 131 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEEc
Confidence 3577788899999999888899776654
|
|
| >PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin | Back alignment and domain information |
|---|
Probab=82.63 E-value=7.2 Score=37.17 Aligned_cols=76 Identities=17% Similarity=0.100 Sum_probs=51.3
Q ss_pred cCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-------CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 333 APDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-------GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 333 s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
..++++|++-+.+|.+++||+......-...... ..+. .....|..+.++.+|.-+++-+ +|....|+..
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~--pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIA--PLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCccHH--HHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEeccc
Confidence 3467889999999999999998763221111000 1111 4567789999998888777765 5788999877
Q ss_pred CCeEEE
Q psy10778 406 TIGYIR 411 (556)
Q Consensus 406 ~~~~v~ 411 (556)
-+..++
T Consensus 96 L~~W~~ 101 (219)
T PF07569_consen 96 LGCWIR 101 (219)
T ss_pred cceeEE
Confidence 544443
|
These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus |
| >PRK05560 DNA gyrase subunit A; Validated | Back alignment and domain information |
|---|
Probab=82.21 E-value=1e+02 Score=35.57 Aligned_cols=237 Identities=10% Similarity=-0.001 Sum_probs=120.5
Q ss_pred eEEeccCCCeEEEEeCCCC-------CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKEL-------PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-------~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.-+.+|.|+--...+- ...........+.+..+..+.....|+..+..|.+.......-+..+......+
T Consensus 500 v~vllS~~GyIKri~~~~~~~~~~~~~g~~~~klKe~D~l~~~~~~~t~d~LllfTs~Grv~~l~v~~iP~~~~~~~G~~ 579 (805)
T PRK05560 500 VVVTLTHGGYIKRTPLDEYRAQRRGGKGVSGAKTKEDDFVEHLFVASTHDTLLFFTNRGRVYRLKVYEIPEASRTARGRP 579 (805)
T ss_pred EEEEEeCCCEEEEcchhhhhhhcccCCCccccccCCCCeeEEEEEecCCCeEEEEecCCeEEEEEhhhCcCCCcCCCCeE
Confidence 5666778888887654321 111111112334555555555667777777788876654432111110000011
Q ss_pred C---eEeeCCCccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCC-------eEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 368 P---TILLGHSACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTI-------GYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 368 ~---~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~-------~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
+ ..+.....-|.++.+.. +...++..+.+|.++--++... .....+.. ...+..+........++
T Consensus 580 i~~ll~L~~~E~Iv~~i~~~~~~~e~~lvlvTk~GyiKRi~l~~~~~~~r~G~~~ikLke---~D~lv~v~~~~~~d~ll 656 (805)
T PRK05560 580 IVNLLPLEPGEKITAILPVREFDDDKYLFFATKNGTVKKTSLSEFSNIRSNGIIAINLDE---GDELIGVRLTDGDDDIL 656 (805)
T ss_pred HHHhcCCCCCceEEEEEeccCCCCCCEEEEEeCCCEEEEEEhHHhhhcccCCceeeccCC---CCEEEEEEEeCCCCEEE
Confidence 1 11222333355555552 5678999999999988766432 22223333 34444444444445566
Q ss_pred EEeecCcCCCCeEEEEEeC----------CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-----
Q psy10778 436 SVLQTTKTGGSILRLHTIN----------AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----- 500 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~----------g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----- 500 (556)
..+ ..|.+..+.+. |.....+.....|.++.... ++. ..++..+..|.++...+..
T Consensus 657 l~T-----~~Gr~~r~~~~eIp~~gr~~~Gv~~i~L~~~E~Vv~~~~v~-~~~---~~il~vTk~G~iKr~~l~e~~~~~ 727 (805)
T PRK05560 657 LAT-----KNGKAIRFPESDVRPMGRTARGVRGIKLREGDEVVSMDVVR-EDS---QEILTVTENGYGKRTPVSEYRLQG 727 (805)
T ss_pred EEE-----CCCcEEEEEhhhcCccCcccCCcccccCCCCCEEEEEEEEc-CCC---cEEEEEEeCCeEEEEEHHHhhccC
Confidence 665 56666655442 22222233344555554431 232 3678888889888775421
Q ss_pred --CeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 501 --LAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 501 --~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
++-+..+.. .....+..+....+...++..+.+|.+..++...
T Consensus 728 R~~kG~~~lkl~~~~d~lv~v~~v~~~~~v~i~T~~G~~lrf~~~e 773 (805)
T PRK05560 728 RGGKGVITIKITEKNGKLVGALPVDDDDEIMLITDSGKLIRTRVSE 773 (805)
T ss_pred CCCCcEEeeeccCCCCeEEEEEEecCCCeEEEEecCCeEEEEEHHH
Confidence 122223321 2224444444334445566677788887777654
|
|
| >COG5290 IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=81.94 E-value=53 Score=36.83 Aligned_cols=95 Identities=7% Similarity=0.109 Sum_probs=56.9
Q ss_pred eEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE----eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 423 SHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS----LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 423 ~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~----~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
..+.|-|.|..+++...++.+....|..+..||-.... ..........+|. -.. ..++++ ..+.+++|-.
T Consensus 250 ~~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn--~~s---~vlav~-~~n~~~lwtt 323 (1243)
T COG5290 250 HQLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWN--LLS---TVLAVA-EGNLLKLWTT 323 (1243)
T ss_pred hccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhh--HHH---HHHHHh-hcceEEEEEc
Confidence 45889999999999875544345567777776543333 2345566777776 332 233333 3568999986
Q ss_pred CCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 499 YKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 499 ~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
.+-...-... ..-..+.-+.|+|..
T Consensus 324 kNyhWYLK~e-~~ip~~s~vkwhpe~ 348 (1243)
T COG5290 324 KNYHWYLKVE-RQIPGISYVKWHPEE 348 (1243)
T ss_pred cceEEEEEEe-ecCCCcceeeecccc
Confidence 5544322222 123456667888754
|
|
| >COG1520 FOG: WD40-like repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=81.51 E-value=69 Score=33.03 Aligned_cols=190 Identities=9% Similarity=-0.012 Sum_probs=94.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCC-CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPL-GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h-~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.+..+..||.|.-.|.+++..+-...... ...+.+-....+|+ ++.++.+|.+..+|..++ +.+.....
T Consensus 70 ~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G---------~~~W~~~~ 139 (370)
T COG1520 70 TVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTG---------TLVWSRNV 139 (370)
T ss_pred eEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCC---------cEEEEEec
Confidence 44445677777777777665332211111 11222222223665 778888897777777544 22222222
Q ss_pred CC-ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC---Ce-eEEEEeCCCCeEEEEeecCcCC--CC
Q psy10778 374 HS-ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT---PV-SHVTMSETNGEIASVLQTTKTG--GS 446 (556)
Q Consensus 374 h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~---~V-~~l~~sp~~~~i~s~s~~~~~~--d~ 446 (556)
.. -.+..-..-.++ .+..++.+|.+...|..+|+....... . .. .+ .... . ....+..+. . ++
T Consensus 140 ~~~~~~~~~~v~~~~-~v~~~s~~g~~~al~~~tG~~~W~~~~-~-~~~~~~~~~~~~-~-~~~~vy~~~-----~~~~~ 209 (370)
T COG1520 140 GGSPYYASPPVVGDG-TVYVGTDDGHLYALNADTGTLKWTYET-P-APLSLSIYGSPA-I-ASGTVYVGS-----DGYDG 209 (370)
T ss_pred CCCeEEecCcEEcCc-EEEEecCCCeEEEEEccCCcEEEEEec-C-CccccccccCce-e-ecceEEEec-----CCCcc
Confidence 22 111111122223 444445788888888888877665443 1 10 00 0111 1 233444444 3 44
Q ss_pred eEEEEEe-CCcEEEEeecCCCeEE-----E-EEee--C-CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 447 ILRLHTI-NAQLITSLASELRITS-----V-TFSN--A-PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 447 ~I~iwdi-~g~~i~~~~~~~~i~~-----i-~~s~--~-pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
.+.-.|. +|......+....+.. . .+.. . -+ .-+..++.+|.+...|..+++.+..+.
T Consensus 210 ~~~a~~~~~G~~~w~~~~~~~~~~~~~~~~~~~~~~~v~v~----~~~~~~~~~g~~~~l~~~~G~~~W~~~ 277 (370)
T COG1520 210 ILYALNAEDGTLKWSQKVSQTIGRTAISTTPAVDGGPVYVD----GGVYAGSYGGKLLCLDADTGELIWSFP 277 (370)
T ss_pred eEEEEEccCCcEeeeeeeecccCcccccccccccCceEEEC----CcEEEEecCCeEEEEEcCCCceEEEEe
Confidence 5666666 3776666432111110 1 1110 0 11 134567778888888999999888887
|
|
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=80.90 E-value=15 Score=41.10 Aligned_cols=104 Identities=12% Similarity=0.111 Sum_probs=71.4
Q ss_pred eEEeccCCCeEEEEeCCC-------C-----------CCcceEcCCCCCceEEEEEc--CCCCEEEEEeCCCcEEEEEee
Q psy10778 295 MICWNECDNLIRLKMSKE-------L-----------PATPVIRPPLGATIATATTA--PDCHTLWLGLTSGNILVYEYE 354 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-------~-----------~~~~~~~~~h~~~V~~i~~s--~dg~~l~tgs~Dg~I~vwd~~ 354 (556)
+|+.+..||.|.+|..++ . ...+.+...-..++..+++. ...++||+++....|.||-..
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 788889999999996521 0 11122322335578999998 778899999998999998876
Q ss_pred eccCcccccccCCCeEeeCCCccEEEEEEccCC-----C-EEEEEcCCCcEEEEeC
Q psy10778 355 LNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-----S-VAVSSSEDGTCLLWDI 404 (556)
Q Consensus 355 ~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-----~-~l~sgs~Dg~I~iwdl 404 (556)
........ ..-..|...|-+|+|-++. . .+++++-.|.+.+|++
T Consensus 196 l~~~r~~~------~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYH------VPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred cccccccc------ccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 53111110 1112367788899997643 2 7888999999999887
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I [] | Back alignment and domain information |
|---|
Probab=80.52 E-value=1.2e+02 Score=35.01 Aligned_cols=166 Identities=14% Similarity=0.049 Sum_probs=97.3
Q ss_pred CCCCceEEEEEc---C----CCCEEEEEeCCCcEEEEEeeec------cCcccccccCCCeEeeCC---CccEEEEEEcc
Q psy10778 322 PLGATIATATTA---P----DCHTLWLGLTSGNILVYEYELN------ASTNKIEFCKPPTILLGH---SACVTDLYLCA 385 (556)
Q Consensus 322 ~h~~~V~~i~~s---~----dg~~l~tgs~Dg~I~vwd~~~~------~~~~~~~~~~~~~~l~~h---~~~V~~l~~s~ 385 (556)
.-..+|..|+|. . ..++|++=. ...+.|+..... ......+...++..+..+ ..+..+++|+|
T Consensus 77 ~~~~PI~qI~fa~~~~~~~~~~~~l~Vrt-~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~~~aDv~FnP 155 (765)
T PF10214_consen 77 DDGSPIKQIKFATLSESFDEKSRWLAVRT-ETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGFPHADVAFNP 155 (765)
T ss_pred CCCCCeeEEEecccccccCCcCcEEEEEc-CCEEEEEEcccccccccccCCccccccceeEEechhhcCCCccceEEecc
Confidence 345688888887 2 223555544 466777773322 112223333455555432 34677899998
Q ss_pred CC-CEEEEEcCCCcEEEEeCCCC----e-EEEEeCCCC---------CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 386 GF-SVAVSSSEDGTCLLWDINTI----G-YIREIPCVD---------PNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 386 ~~-~~l~sgs~Dg~I~iwdl~~~----~-~v~~l~~~h---------~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
.. +.+|.....|.-.|||+..+ . .++.... + +.+.-..+.|.++...++++. ...+.+
T Consensus 156 ~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~-~~gsi~~d~~e~s~w~rI~W~~~~~~lLv~~------r~~l~~ 228 (765)
T PF10214_consen 156 WDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRN-ISGSIIFDPEELSNWKRILWVSDSNRLLVCN------RSKLML 228 (765)
T ss_pred CccceEEEEeccCcEEEEEeccccccCCcceeeccC-CCccccCCCcccCcceeeEecCCCCEEEEEc------CCceEE
Confidence 44 58999999999999999211 1 1111111 1 012234788988878888774 678999
Q ss_pred EEeCCcE----EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 451 HTINAQL----ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 451 wdi~g~~----i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
+|+++.. +......+.|..+.-+ ++..+ ..++..+ ..|...++..
T Consensus 229 ~d~~~~~~~~~l~~~~~~~~IlDv~~~--~~~~~-~~FiLTs--~eiiw~~~~~ 277 (765)
T PF10214_consen 229 IDFESNWQTEYLVTAKTWSWILDVKRS--PDNPS-HVFILTS--KEIIWLDVKS 277 (765)
T ss_pred EECCCCCccchhccCCChhheeeEEec--CCccc-eEEEEec--CeEEEEEccC
Confidence 9997432 2223455788888888 44221 3333322 4566667655
|
These proteins are found in fungi. |
| >COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.25 E-value=7.7 Score=40.30 Aligned_cols=163 Identities=18% Similarity=0.171 Sum_probs=93.4
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-CCccEE-EEEEccCCCEEEEEcCCCcEE
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG-HSACVT-DLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-h~~~V~-~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
....|..+-..|||+.+..-+. .++.|+++...+-... +....-.+ ....|+ .+..-..|.-+..++.||-|.
T Consensus 219 ~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~r----kl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vs 293 (733)
T COG4590 219 PFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIR----KLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVS 293 (733)
T ss_pred CccchHhhEECCCCCEEEEecC-CeEEEEeecccccchh----hhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCcee
Confidence 3456778888999999888775 6888999876532111 01111011 001222 122223455678888999999
Q ss_pred EE-eCCCC-----eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEe
Q psy10778 401 LW-DINTI-----GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFS 473 (556)
Q Consensus 401 iw-dl~~~-----~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s 473 (556)
-| |.+++ ..++.++- . ..++..+.-..+.+-+++-. ..|++.++... .+.+-....-..+.-+++|
T Consensus 294 QWFdvr~~~~p~l~h~R~f~l-~-pa~~~~l~pe~~rkgF~~l~-----~~G~L~~f~st~~~~lL~~~~~~~~~~~~~S 366 (733)
T COG4590 294 QWFDVRRDGQPHLNHIRNFKL-A-PAEVQFLLPETNRKGFYSLY-----RNGTLQSFYSTSEKLLLFERAYQAPQLVAMS 366 (733)
T ss_pred eeeeeecCCCCcceeeecccc-C-cccceeeccccccceEEEEc-----CCCceeeeecccCcceehhhhhcCcceeeeC
Confidence 88 55543 23334433 2 34555554444445566665 67777776554 3333222223466678888
Q ss_pred eCCCCCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
|.+ .++++-. .|+++++.+.+..+
T Consensus 367 --p~~---~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 367 --PNQ---AYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred --ccc---chheeec-CCceEEEEecCCCC
Confidence 777 6666654 57788887765543
|
|
| >PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal | Back alignment and domain information |
|---|
Probab=80.23 E-value=39 Score=29.36 Aligned_cols=112 Identities=12% Similarity=0.095 Sum_probs=66.9
Q ss_pred EEeCCCCeEEEEeecCcCCCCeEEEEEeCC---------cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 426 TMSETNGEIASVLQTTKTGGSILRLHTINA---------QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 426 ~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g---------~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
.|......|++++ ..++|.+++... ..+..+.-...|++++-.+.........|+.|+. ..+..|
T Consensus 5 kfDG~~pcL~~aT-----~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt~-t~llaY 78 (136)
T PF14781_consen 5 KFDGVHPCLACAT-----TGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAY 78 (136)
T ss_pred EeCCCceeEEEEe-----cCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEecc-ceEEEE
Confidence 3444445666666 678888887641 2455566678888887664321112267888875 568899
Q ss_pred eCCCCeEEEEecCCCCCCeEEEEEec----CCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 497 SGYKLAHLLTLNTNVALPVIAVTYSC----DSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 497 d~~~~~~~~~~~~~h~~~V~~l~~s~----dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|+.....+..-. -...|.++.+-. +..++++ +.+..|.-+|....+.
T Consensus 79 DV~~N~d~Fyke--~~DGvn~i~~g~~~~~~~~l~iv-GGncsi~Gfd~~G~e~ 129 (136)
T PF14781_consen 79 DVENNSDLFYKE--VPDGVNAIVIGKLGDIPSPLVIV-GGNCSIQGFDYEGNEI 129 (136)
T ss_pred EcccCchhhhhh--CccceeEEEEEecCCCCCcEEEE-CceEEEEEeCCCCcEE
Confidence 997766544333 246677777643 2334444 4455666666554443
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 556 | ||||
| 1mi1_A | 414 | Crystal Structure Of The Ph-Beach Domain Of Human N | 7e-53 | ||
| 1t77_A | 414 | Crystal Structure Of The Ph-Beach Domains Of Human | 2e-47 |
| >pdb|1MI1|A Chain A, Crystal Structure Of The Ph-Beach Domain Of Human Neurobeachin Length = 414 | Back alignment and structure |
|
| >pdb|1T77|A Chain A, Crystal Structure Of The Ph-Beach Domains Of Human LrbaBGL Length = 414 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| 1t77_A | 414 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 3ow8_A | 321 | WD repeat-containing protein 61; structural genomi | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 1vyh_C | 410 | Platelet-activating factor acetylhydrolase IB alph | 100.0 | |
| 1got_B | 340 | GT-beta; complex (GTP-binding/transducer), G prote | 100.0 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 100.0 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 100.0 | |
| 4gqb_B | 344 | Methylosome protein 50; TIM barrel, beta-propeller | 100.0 | |
| 2pbi_B | 354 | Guanine nucleotide-binding protein subunit beta 5; | 100.0 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 100.0 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 100.0 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.98 | |
| 3frx_A | 319 | Guanine nucleotide-binding protein subunit beta- l | 99.98 | |
| 2ynn_A | 304 | Coatomer subunit beta'; protein transport, peptide | 99.98 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.98 | |
| 2hes_X | 330 | YDR267CP; beta-propeller, WD40 repeat, biosyntheti | 99.98 | |
| 3fm0_A | 345 | Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r | 99.98 | |
| 1erj_A | 393 | Transcriptional repressor TUP1; beta-propeller, tr | 99.98 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3iz6_a | 380 | 40S ribosomal protein RACK1 (RACK1); eukaryotic ri | 99.97 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 4g56_B | 357 | MGC81050 protein; protein arginine methyltransfera | 99.97 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1gxr_A | 337 | ESG1, transducin-like enhancer protein 1; transcri | 99.97 | |
| 2xzm_R | 343 | RACK1; ribosome, translation; 3.93A {Tetrahymena t | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 4ery_A | 312 | WD repeat-containing protein 5; WD40, WIN motif, b | 99.97 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.97 | |
| 1nr0_A | 611 | Actin interacting protein 1; beta propeller, WD40 | 99.97 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.97 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.97 | |
| 3vl1_A | 420 | 26S proteasome regulatory subunit RPN14; beta-prop | 99.97 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.97 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.97 | |
| 2ymu_A | 577 | WD-40 repeat protein; unknown function, two domain | 99.97 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.97 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.97 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.97 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.97 | |
| 2pm7_B | 297 | Protein transport protein SEC13, protein transport | 99.97 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.97 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.97 | |
| 3dm0_A | 694 | Maltose-binding periplasmic protein fused with RAC | 99.97 | |
| 1sq9_A | 397 | Antiviral protein SKI8; WD repeat, beta-transducin | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 3i2n_A | 357 | WD repeat-containing protein 92; WD40 repeats, str | 99.96 | |
| 4aez_A | 401 | CDC20, WD repeat-containing protein SLP1; cell cyc | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.96 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 4aow_A | 340 | Guanine nucleotide-binding protein subunit beta-2; | 99.96 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.96 | |
| 3ei3_B | 383 | DNA damage-binding protein 2; UV-damage, DDB, nucl | 99.96 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.96 | |
| 2pm9_A | 416 | Protein WEB1, protein transport protein SEC31; bet | 99.96 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.96 | |
| 1k8k_C | 372 | P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta- | 99.96 | |
| 3k26_A | 366 | Polycomb protein EED; WD40, structural genomics, N | 99.96 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.96 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.96 | |
| 3odt_A | 313 | Protein DOA1; ubiquitin, nuclear protein; HET: MSE | 99.96 | |
| 3bg1_A | 316 | Protein SEC13 homolog; NPC, transport, WD repeat, | 99.96 | |
| 2j04_B | 524 | YDR362CP, TAU91; beta propeller, type 2 promoters, | 99.96 | |
| 3jrp_A | 379 | Fusion protein of protein transport protein SEC13 | 99.96 | |
| 3zwl_B | 369 | Eukaryotic translation initiation factor 3 subuni; | 99.96 | |
| 1r5m_A | 425 | SIR4-interacting protein SIF2; transcription corep | 99.96 | |
| 3v7d_B | 464 | Cell division control protein 4; WD 40 domain, pho | 99.95 | |
| 4e54_B | 435 | DNA damage-binding protein 2; beta barrel, double | 99.95 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.95 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 3dwl_C | 377 | Actin-related protein 2/3 complex subunit 1; prope | 99.95 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.95 | |
| 2aq5_A | 402 | Coronin-1A; WD40 repeat, 7-bladed beta-propeller, | 99.95 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.95 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.95 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.95 | |
| 3dw8_B | 447 | Serine/threonine-protein phosphatase 2A 55 kDa RE | 99.95 | |
| 1p22_A | 435 | F-BOX/WD-repeat protein 1A; ubiquitination, degrad | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 2ovr_B | 445 | FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 | 99.95 | |
| 3f3f_A | 351 | Nucleoporin SEH1; structural protein, protein comp | 99.95 | |
| 4a11_B | 408 | DNA excision repair protein ERCC-8; DNA binding pr | 99.94 | |
| 3gre_A | 437 | Serine/threonine-protein kinase VPS15; seven-blade | 99.94 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.94 | |
| 3mmy_A | 368 | MRNA export factor; mRNA export, nuclear protein; | 99.94 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 99.94 | |
| 1pgu_A | 615 | Actin interacting protein 1; WD repeat, seven-blad | 99.94 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.94 | |
| 3sfz_A | 1249 | APAF-1, apoptotic peptidase activating factor 1; a | 99.94 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 3jro_A | 753 | Fusion protein of protein transport protein SEC13 | 99.93 | |
| 2vdu_B | 450 | TRNA (guanine-N(7)-)-methyltransferase- associated | 99.93 | |
| 1yfq_A | 342 | Cell cycle arrest protein BUB3; WD repeat WD40 rep | 99.93 | |
| 2xyi_A | 430 | Probable histone-binding protein CAF1; transcripti | 99.93 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 4h5i_A | 365 | Guanine nucleotide-exchange factor SEC12; copii ve | 99.93 | |
| 1l0q_A | 391 | Surface layer protein; SLP, S-layer, 7-bladed beta | 99.93 | |
| 2oaj_A | 902 | Protein SNI1; WD40 repeat, beta propeller, endocyt | 99.93 | |
| 3lrv_A | 343 | PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 3vu4_A | 355 | KMHSV2; beta-propeller fold, protein transport; 2. | 99.92 | |
| 3bws_A | 433 | Protein LP49; two-domain, immunoglobulin-like, 7-b | 99.91 | |
| 4gq1_A | 393 | NUP37; propeller, transport protein; 2.40A {Schizo | 99.91 | |
| 2j04_A | 588 | TAU60, YPL007P, hypothetical protein YPL007C; beta | 99.9 | |
| 4gga_A | 420 | P55CDC, cell division cycle protein 20 homolog; ce | 99.89 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.87 | |
| 2w18_A | 356 | PALB2, fancn, partner and localizer of BRCA2; fanc | 99.87 | |
| 4ggc_A | 318 | P55CDC, cell division cycle protein 20 homolog; ce | 99.86 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.85 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.85 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.84 | |
| 2hqs_A | 415 | Protein TOLB; TOLB, PAL, TOL, transport protein-li | 99.84 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.83 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.82 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.81 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.81 | |
| 1nir_A | 543 | Nitrite reductase; hemoprotein, denitrification, d | 99.8 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.8 | |
| 1ri6_A | 343 | Putative isomerase YBHE; 7-bladed propeller, enzym | 99.79 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.79 | |
| 3u4y_A | 331 | Uncharacterized protein; structural genomics, PSI- | 99.79 | |
| 2ojh_A | 297 | Uncharacterized protein ATU1656/AGR_C_3050; TOLB, | 99.79 | |
| 2oit_A | 434 | Nucleoporin 214KDA; NH2 terminal domain of NUP214/ | 99.78 | |
| 3vgz_A | 353 | Uncharacterized protein YNCE; beta-propeller, prot | 99.77 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.76 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.75 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.73 | |
| 2ecf_A | 741 | Dipeptidyl peptidase IV; prolyl oligopeptidase fam | 99.71 | |
| 2z3z_A | 706 | Dipeptidyl aminopeptidase IV; peptidase family S9, | 99.7 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.7 | |
| 3hfq_A | 347 | Uncharacterized protein LP_2219; Q88V64_lacpl, NES | 99.7 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.68 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.67 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.67 | |
| 1xfd_A | 723 | DIP, dipeptidyl aminopeptidase-like protein 6, dip | 99.67 | |
| 1k32_A | 1045 | Tricorn protease; protein degradation, substrate g | 99.67 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.66 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.66 | |
| 3scy_A | 361 | Hypothetical bacterial 6-phosphogluconolactonase; | 99.65 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.64 | |
| 3o4h_A | 582 | Acylamino-acid-releasing enzyme; alpha/beta hydrol | 99.64 | |
| 1pby_B | 337 | Quinohemoprotein amine dehydrogenase 40 kDa subuni | 99.64 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.62 | |
| 1jmx_B | 349 | Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; | 99.6 | |
| 1jof_A | 365 | Carboxy-CIS,CIS-muconate cyclase; beta-propeller, | 99.59 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.59 | |
| 1z68_A | 719 | Fibroblast activation protein, alpha subunit; sepr | 99.57 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.56 | |
| 1q7f_A | 286 | NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL | 99.54 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.53 | |
| 3pe7_A | 388 | Oligogalacturonate lyase; seven-bladed beta-propel | 99.53 | |
| 3fvz_A | 329 | Peptidyl-glycine alpha-amidating monooxygenase; be | 99.52 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.51 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.5 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.49 | |
| 4a5s_A | 740 | Dipeptidyl peptidase 4 soluble form; hydrolase, ty | 99.49 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.49 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.49 | |
| 3dsm_A | 328 | Uncharacterized protein bacuni_02894; seven_blated | 99.46 | |
| 3azo_A | 662 | Aminopeptidase; POP family, hydrolase; 2.00A {Stre | 99.46 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.45 | |
| 2dg1_A | 333 | DRP35, lactonase; beta propeller, hydrolase; 1.72A | 99.44 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.44 | |
| 3no2_A | 276 | Uncharacterized protein; six-bladed beta-propeller | 99.42 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.42 | |
| 3e5z_A | 296 | Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco | 99.41 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.38 | |
| 3c5m_A | 396 | Oligogalacturonate lyase; blade-shaped beta-propel | 99.37 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.37 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.36 | |
| 2xdw_A | 710 | Prolyl endopeptidase; alpha/beta-hydrolase, amnesi | 99.35 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 99.31 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.31 | |
| 2oiz_A | 361 | Aromatic amine dehydrogenase, large subunit; oxido | 99.3 | |
| 2bkl_A | 695 | Prolyl endopeptidase; mechanistic study, celiac sp | 99.3 | |
| 2z2n_A | 299 | Virginiamycin B lyase; seven-bladed beta-propeller | 99.29 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.29 | |
| 1qks_A | 567 | Cytochrome CD1 nitrite reductase; enzyme, oxidored | 99.26 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.25 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.25 | |
| 2gop_A | 347 | Trilobed protease; beta propeller, open velcro, hy | 99.24 | |
| 1rwi_B | 270 | Serine/threonine-protein kinase PKND; beta propell | 99.23 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.2 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.18 | |
| 2qc5_A | 300 | Streptogramin B lactonase; beta propeller, lyase; | 99.18 | |
| 1xip_A | 388 | Nucleoporin NUP159; beta-propeller, transport prot | 99.17 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 99.15 | |
| 1yr2_A | 741 | Prolyl oligopeptidase; prolyl endopeptidase, mecha | 99.13 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 99.09 | |
| 1pjx_A | 314 | Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries | 99.09 | |
| 3g4e_A | 297 | Regucalcin; six bladed beta-propeller, gluconolcat | 99.06 | |
| 3hrp_A | 409 | Uncharacterized protein; NP_812590.1, structural g | 99.03 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 99.02 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 99.02 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.98 | |
| 2ghs_A | 326 | AGR_C_1268P; regucalcin, structural genomics, join | 98.97 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.94 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.93 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.88 | |
| 2hz6_A | 369 | Endoplasmic reticulum to nucleus signalling 1 isof | 98.86 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.83 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.82 | |
| 3iuj_A | 693 | Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas | 98.82 | |
| 1yiq_A | 689 | Quinohemoprotein alcohol dehydrogenase; electron t | 98.82 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.82 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.82 | |
| 1kb0_A | 677 | Quinohemoprotein alcohol dehydrogenase; beta-prope | 98.79 | |
| 3dr2_A | 305 | Exported gluconolactonase; gluconolactonase SMP-30 | 98.78 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.78 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.78 | |
| 2ece_A | 462 | 462AA long hypothetical selenium-binding protein; | 98.77 | |
| 2qe8_A | 343 | Uncharacterized protein; structural genomics, join | 98.77 | |
| 3sjl_D | 386 | Methylamine dehydrogenase heavy chain; MAUG, C-hem | 98.74 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.73 | |
| 2mad_H | 373 | Methylamine dehydrogenase (heavy subunit); oxidore | 98.72 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.69 | |
| 1npe_A | 267 | Nidogen, entactin; glycoprotein, basement membrane | 98.67 | |
| 3q7m_A | 376 | Lipoprotein YFGL, BAMB; beta-propeller, BAM comple | 98.65 | |
| 1fwx_A | 595 | Nitrous oxide reductase; beta-propeller domain, cu | 98.48 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 98.47 | |
| 3c75_H | 426 | MADH, methylamine dehydrogenase heavy chain; coppe | 98.47 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.47 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.46 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 98.44 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.42 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.4 | |
| 1kv9_A | 668 | Type II quinohemoprotein alcohol dehydrogenase; el | 98.37 | |
| 2iwa_A | 266 | Glutamine cyclotransferase; pyroglutamate, acyltra | 98.37 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 98.34 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 98.34 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.34 | |
| 3hxj_A | 330 | Pyrrolo-quinoline quinone; all beta protein. incom | 98.32 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 98.28 | |
| 3nol_A | 262 | Glutamine cyclotransferase; beta-propeller, glutam | 98.27 | |
| 3nok_A | 268 | Glutaminyl cyclase; beta-propeller, cyclotransfera | 98.22 | |
| 2ad6_A | 571 | Methanol dehydrogenase subunit 1; PQQ configuratio | 98.22 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 98.2 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 98.18 | |
| 1mda_H | 368 | Methylamine dehydrogenase (heavy subunit); electro | 98.18 | |
| 3mbr_X | 243 | Glutamine cyclotransferase; beta-propeller; 1.44A | 98.18 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.14 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 98.06 | |
| 1w6s_A | 599 | Methanol dehydrogenase subunit 1; anisotropic, ele | 98.06 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.05 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 98.05 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 98.05 | |
| 1flg_A | 582 | Protein (quinoprotein ethanol dehydrogenase); supe | 98.0 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.97 | |
| 2fp8_A | 322 | Strictosidine synthase; six bladed beta propeller | 97.96 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.95 | |
| 3v64_C | 349 | Agrin; beta propeller, laminin-G, signaling, prote | 97.91 | |
| 4a2l_A | 795 | BT_4663, two-component system sensor histidine kin | 97.9 | |
| 1ijq_A | 316 | LDL receptor, low-density lipoprotein receptor; be | 97.89 | |
| 3qqz_A | 255 | Putative uncharacterized protein YJIK; MCSG, PSI-2 | 97.87 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.86 | |
| 2p4o_A | 306 | Hypothetical protein; putative lactonase, structur | 97.86 | |
| 3v65_B | 386 | Low-density lipoprotein receptor-related protein; | 97.85 | |
| 3p5b_L | 400 | Low density lipoprotein receptor variant; B-propel | 97.83 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.81 | |
| 3sov_A | 318 | LRP-6, low-density lipoprotein receptor-related pr | 97.8 | |
| 3tc9_A | 430 | Hypothetical hydrolase; 6-bladed beta-propeller, i | 97.77 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 97.72 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 97.69 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.69 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.62 | |
| 3v9f_A | 781 | Two-component system sensor histidine kinase/RESP | 97.62 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.62 | |
| 3amr_A | 355 | 3-phytase; beta-propeller, phytate, MYO-inositol h | 97.6 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 97.58 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.5 | |
| 3m0c_C | 791 | LDL receptor, low-density lipoprotein receptor; pr | 97.4 | |
| 2xe4_A | 751 | Oligopeptidase B; hydrolase-inhibitor complex, hyd | 97.35 | |
| 2p9w_A | 334 | MAL S 1 allergenic protein; beta propeller; 1.35A | 97.23 | |
| 4a0p_A | 628 | LRP6, LRP-6, low-density lipoprotein receptor-rela | 97.21 | |
| 1n7d_A | 699 | LDL receptor, low-density lipoprotein receptor; fa | 97.2 | |
| 4hw6_A | 433 | Hypothetical protein, IPT/TIG domain protein; puta | 97.17 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 96.98 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 96.92 | |
| 3s94_A | 619 | LRP-6, low-density lipoprotein receptor-related pr | 96.9 | |
| 1k3i_A | 656 | Galactose oxidase precursor; blade beta propeller, | 96.86 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 96.67 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 96.61 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 96.6 | |
| 3kya_A | 496 | Putative phosphatase; structural genomics, joint c | 96.43 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 96.41 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 96.37 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.36 | |
| 2xzh_A | 365 | Clathrin heavy chain 1; endocytosis, endocytosis i | 96.18 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 96.1 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 96.02 | |
| 3sre_A | 355 | PON1, serum paraoxonase; directed evolution, 6-bla | 95.97 | |
| 2xbg_A | 327 | YCF48-like protein; photosynthesis, photosystem II | 95.91 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.88 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 95.84 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 95.75 | |
| 2vpj_A | 301 | Kelch-like protein 12; adaptor protein, WNT signal | 95.66 | |
| 3ei3_A | 1158 | DNA damage-binding protein 1; UV-damage, DDB, nucl | 95.56 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.56 | |
| 2ism_A | 352 | Putative oxidoreductase; BL41XU spring-8, bladed b | 95.44 | |
| 1bpo_A | 494 | Protein (clathrin); clathrin endocytosis beta-prop | 95.19 | |
| 3ii7_A | 306 | Kelch-like protein 7; protein-binding, kelch-repea | 94.94 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.92 | |
| 3pbp_A | 452 | Nucleoporin NUP82; beta-propeller, mRNA export, mR | 94.68 | |
| 2xn4_A | 302 | Kelch-like protein 2; structural protein, cytoskel | 94.64 | |
| 3a9g_A | 354 | Putative uncharacterized protein; PQQ dependent de | 94.39 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 94.33 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 94.32 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 94.21 | |
| 3ott_A | 758 | Two-component system sensor histidine kinase; beta | 93.74 | |
| 1zgk_A | 308 | Kelch-like ECH-associated protein 1; beta-propelle | 93.6 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 92.64 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 92.5 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 92.07 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 91.96 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 91.6 | |
| 3das_A | 347 | Putative oxidoreductase; aldose sugar dehydrogenas | 90.99 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 90.81 | |
| 3s25_A | 302 | Hypothetical 7-bladed beta-propeller-like protein; | 90.63 | |
| 2g8s_A | 353 | Glucose/sorbosone dehydrogenases; bladed beta-prop | 90.48 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 90.39 | |
| 2woz_A | 318 | Kelch repeat and BTB domain-containing protein 10; | 90.01 | |
| 4asc_A | 315 | Kelch repeat and BTB domain-containing protein 5; | 89.65 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 89.62 | |
| 2be1_A | 339 | Serine/threonine-protein kinase/endoribonuclease; | 88.88 | |
| 1cru_A | 454 | Protein (soluble quinoprotein glucose dehydrogena; | 88.72 | |
| 3no0_A | 276 | DNA gyrase subunit A; DNA topology, topoisomerase, | 86.69 | |
| 2zwa_A | 695 | Leucine carboxyl methyltransferase 2; HET: SAH CIT | 86.41 | |
| 3sbq_A | 638 | Nitrous-oxide reductase; beta-propeller, cupredoxi | 85.77 | |
| 1tl2_A | 236 | L10, protein (tachylectin-2); animal lectin, horse | 83.73 | |
| 2uvk_A | 357 | YJHT; unknown function, hypothetical protein, sial | 82.51 | |
| 3qhy_B | 282 | Beta-lactamase inhibitory protein II; enyzme-inhib | 82.14 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 81.94 | |
| 3uc1_A | 327 | DNA gyrase subunit A; DNA binding protein, topoiso | 81.18 | |
| 1zi0_A | 307 | DNA gyrase subunit A; beta pinwheel, topoisomerase | 80.47 |
| >1t77_A Lipopolysaccharide-responsive and beige-like anchor protein, CDC4-like protein; PH-beach domains, vesicle trafficking, signal transduction; 2.40A {Homo sapiens} SCOP: a.169.1.1 b.55.1.6 PDB: 1mi1_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-80 Score=623.15 Aligned_cols=197 Identities=47% Similarity=0.856 Sum_probs=191.7
Q ss_pred CCCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCcc
Q psy10778 6 GGVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADI 85 (556)
Q Consensus 6 ~~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~~ 85 (556)
.+...+|||||||||++++|++||+|+||||++++.||+|+||+|||+|+||+++|+++. .+++|+|||||||||+|||
T Consensus 217 ~~~~~~~f~ygshyS~~~~V~~yL~R~ePft~~~~~lq~g~fD~~dR~F~Si~~~w~~~~-~~~~d~kElIPEFf~~Pe~ 295 (414)
T 1t77_A 217 EDDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-RDTSDIKELIPEFYYLPEM 295 (414)
T ss_dssp CCSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-HCTTCCCCBCGGGGTCGGG
T ss_pred cccCCCCcccCCCCCCHHHHHHHHhcCCcHHHHHHHHhcCCcCCCccchhhHHHHHHHHh-ccCCCccccCchhhcChHh
Confidence 456779999999999999999999999999999999999999999999999999999875 5689999999999999999
Q ss_pred eecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCcccc
Q psy10778 86 LVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYY 165 (556)
Q Consensus 86 ~~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~y~ 165 (556)
|+|.|+|+||++|+|+.|+||+|||||++|++||++||+||||+|||+|||+||||||||||+|++|++|.|||||++|+
T Consensus 296 l~N~n~~~lG~~~~g~~v~DV~LP~Wa~sp~~FI~~~R~aLES~~VS~~Lh~WIDLiFGykq~G~~Av~a~Nvf~~ltY~ 375 (414)
T 1t77_A 296 FVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYE 375 (414)
T ss_dssp GSCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGST
T ss_pred hccccCCccccccCCCCCCceeCCCCCCCHHHHHHHHHHHHcChHhhhhhhhhhhhhcCcccCCHHHHhcCCccccceec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-cccCCCCCHHHHHHHHHHHHhcCCcccccccCCCCCC
Q psy10778 166 G-FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 203 (556)
Q Consensus 166 ~-~~~~~~~d~~~~~~~~~~~~~~g~~p~~lf~~~h~~~ 203 (556)
| +|++.++|+.+|.++++||++|||+|.|||++|||+|
T Consensus 376 ~~vd~~~i~d~~~~~a~~~~i~~fGQ~P~QLF~~pHP~R 414 (414)
T 1t77_A 376 GAVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 414 (414)
T ss_dssp TSCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred CcccccccCCHHHHHHHHHHHHHcCCChhhhhcCCCCCC
Confidence 8 8999999999999999999999999999999999985
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-34 Score=288.13 Aligned_cols=236 Identities=14% Similarity=0.164 Sum_probs=210.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||.+++.....+. .|...|.+++|++++++|++|+.|++|++||+.++ +.+..+.+|
T Consensus 27 ~l~s~~~dg~v~lWd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~~~~---------~~~~~~~~h 96 (304)
T 2ynn_A 27 WVLTTLYSGRVELWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---------EKVVDFEAH 96 (304)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EEEEEcCCCcEEEEECCCCceeEEee-ccCCcEEEEEEeCCCCEEEEECCCCEEEEEECCCC---------cEEEEEeCC
Confidence 88999999999999999887776665 78899999999999999999999999999999876 556789999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.+.|++++|+|+++++++|+.||+|++||++++ .....+.+ | ...|.+++|+| ++..+++++ .|++|++||
T Consensus 97 ~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~~l~sgs-----~D~~v~iwd 169 (304)
T 2ynn_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H-EHFVMCVAFNPKDPSTFASGC-----LDRTVKVWS 169 (304)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECC-C-CSCEEEEEECTTCTTEEEEEE-----TTSEEEEEE
T ss_pred CCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcc-c-CCcEEEEEECCCCCCEEEEEe-----CCCeEEEEE
Confidence 999999999999999999999999999999887 45567888 9 89999999999 578899999 899999999
Q ss_pred eC-CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 453 IN-AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++ +.....+ .+...+..++|++.+++ .+|++|+.||.|++||+.+++++..+. +|...|.+++|+|++.+|++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~s~s~D~~i~iWd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s 245 (304)
T 2ynn_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIIS 245 (304)
T ss_dssp TTCSSCSEEEECCCTTCEEEEEECCSTTC---CEEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEE
T ss_pred CCCCCccceeccCCcCcEEEEEEEEcCCC---CEEEEEcCCCeEEEEeCCCCccceeeC-CCCCCEEEEEECCCCCEEEE
Confidence 96 4333333 35578999999966677 899999999999999999999999998 89999999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCeee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|+.||.|++||+.+++....+.
T Consensus 246 ~s~Dg~i~iWd~~~~~~~~~~~ 267 (304)
T 2ynn_A 246 GSEDGTLKIWNSSTYKVEKTLN 267 (304)
T ss_dssp EETTSCEEEEETTTCCEEEEEC
T ss_pred EcCCCeEEEEECCCCceeeecc
Confidence 9999999999999877655543
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-34 Score=298.33 Aligned_cols=234 Identities=15% Similarity=0.200 Sum_probs=216.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||..+++....+. +|.+.|++++|+|++++|++|+.||+|++||+... +.+..+.+|
T Consensus 122 ~l~s~s~Dg~i~vwd~~~~~~~~~l~-~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~---------~~~~~~~~h 191 (410)
T 1vyh_C 122 VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF---------ECIRTMHGH 191 (410)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---------CEEECCCCC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEe-ccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC---------ceeEEEcCC
Confidence 89999999999999999998887776 89999999999999999999999999999998765 456778899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|+|+++.+++|+.||+|++||++++..+.++.+ | ...|.++++++++..+++++ .|+.|++||++
T Consensus 192 ~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~-h-~~~v~~~~~~~~g~~l~s~s-----~D~~v~vwd~~ 264 (410)
T 1vyh_C 192 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-H-REWVRMVRPNQDGTLIASCS-----NDQTVRVWVVA 264 (410)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEETT
T ss_pred CCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeC-C-CccEEEEEECCCCCEEEEEc-----CCCeEEEEECC
Confidence 99999999999999999999999999999999999999999 9 89999999999999999999 89999999997
Q ss_pred -CcEEEEe-ecCCCeEEEEEeeCCC--------------------CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 455 -AQLITSL-ASELRITSVTFSNAPE--------------------GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 455 -g~~i~~~-~~~~~i~~i~~s~~pd--------------------g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
++....+ .|...|.+++|+ |+ | .+|++|+.||.|++||+.+++++..+. +|.
T Consensus 265 ~~~~~~~~~~h~~~v~~~~~~--~~~~~~~~~~~~~~~~~~~~~~g---~~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~ 338 (410)
T 1vyh_C 265 TKECKAELREHRHVVECISWA--PESSYSSISEATGSETKKSGKPG---PFLLSGSRDKTIKMWDVSTGMCLMTLV-GHD 338 (410)
T ss_dssp TCCEEEEECCCSSCEEEEEEC--CSCGGGGGGGCCSCC-------C---CEEEEEETTSEEEEEETTTTEEEEEEE-CCS
T ss_pred CCceeeEecCCCceEEEEEEc--CcccccchhhhccccccccCCCC---CEEEEEeCCCeEEEEECCCCceEEEEE-CCC
Confidence 6666666 477899999999 54 4 689999999999999999999999998 899
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 339 ~~v~~v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~ 377 (410)
T 1vyh_C 339 NWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLN 377 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEE
T ss_pred CcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEc
Confidence 999999999999999999999999999999877766654
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-33 Score=285.53 Aligned_cols=225 Identities=17% Similarity=0.222 Sum_probs=208.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|++|++||+.+++....+. .|...+.+++|+|++++|++|+.||.|++|++..+ +....+..|
T Consensus 94 ~l~s~s~D~~i~lWd~~~~~~~~~~~-~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~---------~~~~~~~~~ 163 (321)
T 3ow8_A 94 IAASSSLDAHIRLWDLENGKQIKSID-AGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESG---------KKEYSLDTR 163 (321)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTC---------SEEEEEECS
T ss_pred EEEEEeCCCcEEEEECCCCCEEEEEe-CCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCC---------ceeEEecCC
Confidence 89999999999999999887777665 67888999999999999999999999999999865 445678889
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|+|++++|++|+.||.|++||+++++.+..+.. | ..+|.+++|+|++.+|++++ .|+.|++||++
T Consensus 164 ~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~-h-~~~v~~l~~spd~~~l~s~s-----~dg~i~iwd~~ 236 (321)
T 3ow8_A 164 GKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEG-H-AMPIRSLTFSPDSQLLVTAS-----DDGYIKIYDVQ 236 (321)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-C-SSCCCEEEECTTSCEEEEEC-----TTSCEEEEETT
T ss_pred CceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcc-c-CCceeEEEEcCCCCEEEEEc-----CCCeEEEEECC
Confidence 99999999999999999999999999999999999999999 9 89999999999999999999 89999999997
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
++.+..+. |...|.+++|+ |++ .+|++|+.||+|++||+.+++++..+. +|...|.+++|+|+++.|++++.
T Consensus 237 ~~~~~~~~~~h~~~v~~~~~s--p~~---~~l~s~s~D~~v~iwd~~~~~~~~~~~-~h~~~v~~v~~s~~g~~l~s~~~ 310 (321)
T 3ow8_A 237 HANLAGTLSGHASWVLNVAFC--PDD---THFVSSSSDKSVKVWDVGTRTCVHTFF-DHQDQVWGVKYNGNGSKIVSVGD 310 (321)
T ss_dssp TCCEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEET
T ss_pred CcceeEEEcCCCCceEEEEEC--CCC---CEEEEEeCCCcEEEEeCCCCEEEEEEc-CCCCcEEEEEECCCCCEEEEEeC
Confidence 67776664 77899999999 898 899999999999999999999999998 89999999999999999999999
Q ss_pred CCcEEEEEcC
Q psy10778 533 EGLVIIWESS 542 (556)
Q Consensus 533 Dg~V~vwdl~ 542 (556)
||.|++||.+
T Consensus 311 d~~i~vwd~p 320 (321)
T 3ow8_A 311 DQEIHIYDCP 320 (321)
T ss_dssp TCCEEEEECC
T ss_pred CCeEEEEeCC
Confidence 9999999974
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-33 Score=289.83 Aligned_cols=233 Identities=16% Similarity=0.068 Sum_probs=196.9
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcceEc---CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATPVIR---PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~~~~---~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.+.+++|+.||+|+|||+.+++...... .+|.+.|++++|+|+|++|++|+.||+|++||+.++ +++.
T Consensus 93 d~~l~~~s~dg~v~lWd~~~~~~~~~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~---------~~~~ 163 (344)
T 4gqb_B 93 ERGILVASDSGAVELWELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQ---------VVLS 163 (344)
T ss_dssp TTEEEEEETTSEEEEEEECTTSSCEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEE
T ss_pred CCeEEEEECCCEEEEEeccCCCceeEeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------cEEE
Confidence 3478899999999999999887654432 379999999999999999999999999999999876 5668
Q ss_pred EeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCC-CeEEEEeecCcCCCC
Q psy10778 370 ILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETN-GEIASVLQTTKTGGS 446 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~ 446 (556)
.+.+|.+.|++++|++++. ++++|+.||+|++||+++++.+..+... + ...+.+++|+|++ .++++++ .|+
T Consensus 164 ~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~p~~~~~l~sg~-----~dg 237 (344)
T 4gqb_B 164 SYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAP-GYLPTSLAWHPQQSEVFVFGD-----ENG 237 (344)
T ss_dssp EECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC-----CCCEEEEEECSSCTTEEEEEE-----TTS
T ss_pred EEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeeccee-eccceeeeecCCCCcceEEec-----cCC
Confidence 8999999999999999884 8899999999999999999988887531 3 4578999999965 5677787 899
Q ss_pred eEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 447 ILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
.|++||++ ++++..+. |...|++++|+ |++. ++|++|+.||+|++||+.+++++. +. +|...|++++|+|++
T Consensus 238 ~v~~wd~~~~~~~~~~~~h~~~v~~v~fs--p~g~--~~lasgs~D~~i~vwd~~~~~~~~-~~-~H~~~V~~v~~sp~~ 311 (344)
T 4gqb_B 238 TVSLVDTKSTSCVLSSAVHSQCVTGLVFS--PHSV--PFLASLSEDCSLAVLDSSLSELFR-SQ-AHRDFVRDATWSPLN 311 (344)
T ss_dssp EEEEEESCC--CCEEEECCSSCEEEEEEC--SSSS--CCEEEEETTSCEEEECTTCCEEEE-EC-CCSSCEEEEEECSSS
T ss_pred cEEEEECCCCcEEEEEcCCCCCEEEEEEc--cCCC--eEEEEEeCCCeEEEEECCCCcEEE-Ec-CCCCCEEEEEEeCCC
Confidence 99999997 77777764 78899999999 7763 589999999999999998887664 44 799999999999998
Q ss_pred C-EEEEEcCCCcEEEEEcCCCCC
Q psy10778 525 Q-HLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 525 ~-~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+ +|++|+.||+|++|+++++..
T Consensus 312 ~~llas~s~D~~v~~w~v~~~~~ 334 (344)
T 4gqb_B 312 HSLLTTVGWDHQVVHHVVPTEPL 334 (344)
T ss_dssp TTEEEEEETTSCEEEEECCC---
T ss_pred CeEEEEEcCCCeEEEEECCCCCC
Confidence 5 677999999999999988543
|
| >3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-33 Score=284.15 Aligned_cols=235 Identities=15% Similarity=0.190 Sum_probs=213.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce-EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV-IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~-~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++|+.|++|++|+..+++.... ...+|...|.++++++++..+++|+.|++|++||+..+ +.+..+..
T Consensus 50 ~l~tgs~D~~v~vW~~~~~~~~~~~~l~gh~~~v~~~~~~~~~~~l~s~s~D~~i~lWd~~~~---------~~~~~~~~ 120 (321)
T 3ow8_A 50 TVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDISHTLPIAASSSLDAHIRLWDLENG---------KQIKSIDA 120 (321)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTT---------EEEEEEEC
T ss_pred EEEEEcCCCCEEEEECCCCCeeeeeeeccCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------CEEEEEeC
Confidence 899999999999999876643322 22389999999999999999999999999999999866 45577888
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|...+.+++|+|++++|++|+.||.|++||+.+++....+.. + ...|.+++|+|++++|++++ .|+.|++||+
T Consensus 121 ~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~-~-~~~v~~~~~spdg~~lasg~-----~dg~i~iwd~ 193 (321)
T 3ow8_A 121 GPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDT-R-GKFILSIAYSPDGKYLASGA-----IDGIINIFDI 193 (321)
T ss_dssp CTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEEC-S-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEET
T ss_pred CCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecC-C-CceEEEEEECCCCCEEEEEc-----CCCeEEEEEC
Confidence 999999999999999999999999999999999999988888 7 88999999999999999999 8999999999
Q ss_pred C-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 454 N-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 454 ~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+ ++.+..+. |...|.+++|+ |++ ++|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++++|++++
T Consensus 194 ~~~~~~~~~~~h~~~v~~l~~s--pd~---~~l~s~s~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s 267 (321)
T 3ow8_A 194 ATGKLLHTLEGHAMPIRSLTFS--PDS---QLLVTASDDGYIKIYDVQHANLAGTLS-GHASWVLNVAFCPDDTHFVSSS 267 (321)
T ss_dssp TTTEEEEEECCCSSCCCEEEEC--TTS---CEEEEECTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEE
T ss_pred CCCcEEEEEcccCCceeEEEEc--CCC---CEEEEEcCCCeEEEEECCCcceeEEEc-CCCCceEEEEECCCCCEEEEEe
Confidence 7 77777775 67899999999 899 899999999999999999999999998 8999999999999999999999
Q ss_pred CCCcEEEEEcCCCCCcCeee
Q psy10778 532 TEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.||.|++||+.+++.+..+.
T Consensus 268 ~D~~v~iwd~~~~~~~~~~~ 287 (321)
T 3ow8_A 268 SDKSVKVWDVGTRTCVHTFF 287 (321)
T ss_dssp TTSCEEEEETTTTEEEEEEC
T ss_pred CCCcEEEEeCCCCEEEEEEc
Confidence 99999999999877665553
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-32 Score=278.23 Aligned_cols=223 Identities=17% Similarity=0.239 Sum_probs=201.4
Q ss_pred ceEEeccCCCeEEEEeCCCCCC----cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 294 GMICWNECDNLIRLKMSKELPA----TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~----~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.++++|+.|+.+++|++.+... ...+ .+|.+.|.+++|++++ .+++|+.|++|++||+.++ +.+.
T Consensus 110 ~~l~s~~~d~~v~iw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~-~l~s~s~d~~i~~wd~~~~---------~~~~ 178 (340)
T 1got_B 110 NYVACGGLDNICSIYNLKTREGNVRVSREL-AGHTGYLSCCRFLDDN-QIVTSSGDTTCALWDIETG---------QQTT 178 (340)
T ss_dssp SEEEEEETTCEEEEEETTTCSBSCEEEEEE-ECCSSCEEEEEEEETT-EEEEEETTSCEEEEETTTT---------EEEE
T ss_pred CEEEEEeCCCeEEEEECccCCCcceeEEEe-cCCCccEEEEEECCCC-cEEEEECCCcEEEEECCCC---------cEEE
Confidence 3899999999999999986532 1223 3799999999999876 5899999999999999866 4557
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
.+.+|.+.|.+++|+|+++++++|+.||+|++||+++++.+.++.. | ...|.+++|+|++..|++++ .|+.|+
T Consensus 179 ~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~l~s~s-----~d~~v~ 251 (340)
T 1got_B 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-H-ESDINAICFFPNGNAFATGS-----DDATCR 251 (340)
T ss_dssp EECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEE
T ss_pred EEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcC-C-cCCEEEEEEcCCCCEEEEEc-----CCCcEE
Confidence 8899999999999999999999999999999999999999999999 9 89999999999999999999 899999
Q ss_pred EEEeC-CcEEEEeecC---CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 450 LHTIN-AQLITSLASE---LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 450 iwdi~-g~~i~~~~~~---~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
+||++ ++.+..+.+. ..|.+++|+ |+| ++|++|+.||.|++||+.+++.+..+. +|..+|++++|+|+|.
T Consensus 252 iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~g---~~l~~g~~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~s~dg~ 325 (340)
T 1got_B 252 LFDLRADQELMTYSHDNIICGITSVSFS--KSG---RLLLAGYDDFNCNVWDALKADRAGVLA-GHDNRVSCLGVTDDGM 325 (340)
T ss_dssp EEETTTTEEEEEECCTTCCSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTSS
T ss_pred EEECCCCcEEEEEccCCcccceEEEEEC--CCC---CEEEEECCCCeEEEEEcccCcEeeEee-cCCCcEEEEEEcCCCC
Confidence 99997 6666666543 479999999 899 899999999999999999999999998 8999999999999999
Q ss_pred EEEEEcCCCcEEEEE
Q psy10778 526 HLYASNTEGLVIIWE 540 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwd 540 (556)
+|++|+.||.|++||
T Consensus 326 ~l~s~s~D~~i~iWd 340 (340)
T 1got_B 326 AVATGSWDSFLKIWN 340 (340)
T ss_dssp CEEEEETTSCEEEEC
T ss_pred EEEEEcCCccEEecC
Confidence 999999999999996
|
| >1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-33 Score=289.65 Aligned_cols=225 Identities=15% Similarity=0.204 Sum_probs=207.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|++|++||..+++....+. +|...|++++|+|++++|++|+.|++|++||+.++ .++..+.+|
T Consensus 164 ~l~sgs~D~~i~iwd~~~~~~~~~~~-~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~---------~~~~~~~~h 233 (410)
T 1vyh_C 164 LLASCSADMTIKLWDFQGFECIRTMH-GHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTG---------YCVKTFTGH 233 (410)
T ss_dssp EEEEEETTSCCCEEETTSSCEEECCC-CCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EEEEEeCCCeEEEEeCCCCceeEEEc-CCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------cEEEEEeCC
Confidence 89999999999999998877666654 89999999999999999999999999999999876 556788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC--------------------CCeE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET--------------------NGEI 434 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~--------------------~~~i 434 (556)
...|.++++++++.++++|+.||+|++||+.+++....+.. | ...|.+++|+|+ +.++
T Consensus 234 ~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l 311 (410)
T 1vyh_C 234 REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELRE-H-RHVVECISWAPESSYSSISEATGSETKKSGKPGPFL 311 (410)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECC-C-SSCEEEEEECCSCGGGGGGGCCSCC-------CCEE
T ss_pred CccEEEEEECCCCCEEEEEcCCCeEEEEECCCCceeeEecC-C-CceEEEEEEcCcccccchhhhccccccccCCCCCEE
Confidence 99999999999999999999999999999999999999998 9 899999999996 5689
Q ss_pred EEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 435 ASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
++++ .|+.|++||++ +..+..+. |...|.+++|+ |+| ++|++|+.||.|++||+.+++++..+. +|.
T Consensus 312 ~sgs-----~D~~i~iwd~~~~~~~~~~~~h~~~v~~v~~~--~~g---~~l~s~s~D~~i~vwd~~~~~~~~~~~-~h~ 380 (410)
T 1vyh_C 312 LSGS-----RDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH--SGG---KFILSCADDKTLRVWDYKNKRCMKTLN-AHE 380 (410)
T ss_dssp EEEE-----TTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--SSS---SCEEEEETTTEEEEECCTTSCCCEEEE-CCS
T ss_pred EEEe-----CCCeEEEEECCCCceEEEEECCCCcEEEEEEc--CCC---CEEEEEeCCCeEEEEECCCCceEEEEc-CCC
Confidence 9998 89999999997 77777764 77899999999 888 899999999999999999999999998 899
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
..|++++|+|++.+|++|+.||.|++|+++
T Consensus 381 ~~v~~l~~~~~~~~l~sgs~D~~i~vW~~r 410 (410)
T 1vyh_C 381 HFVTSLDFHKTAPYVVTGSVDQTVKVWECR 410 (410)
T ss_dssp SCEEEEEECSSSSCEEEEETTSEEEEEC--
T ss_pred CcEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Confidence 999999999999999999999999999863
|
| >1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.9e-32 Score=274.60 Aligned_cols=238 Identities=19% Similarity=0.236 Sum_probs=210.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||..+++....+. .|...|.+++|+|++++|++|+.|+.|++|++...... ......+.+|
T Consensus 69 ~l~s~s~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~~~~~~~-----~~~~~~~~~h 142 (340)
T 1got_B 69 LLLSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGN-----VRVSRELAGH 142 (340)
T ss_dssp EEEEEETTTEEEEEETTTCCEEEEEE-CSSSCEEEEEECTTSSEEEEEETTCEEEEEETTTCSBS-----CEEEEEEECC
T ss_pred EEEEEeCCCcEEEEECCCCCcceEee-cCCccEEEEEECCCCCEEEEEeCCCeEEEEECccCCCc-----ceeEEEecCC
Confidence 88999999999999999887777665 78999999999999999999999999999998754211 1234678899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.|.++.|++++. +++++.||+|++||+.+++.+..+.+ | ...|.+++|+|++..+++++ .|+.|++||++
T Consensus 143 ~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~l~sg~-----~d~~v~~wd~~ 214 (340)
T 1got_B 143 TGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTG-H-TGDVMSLSLAPDTRLFVSGA-----CDASAKLWDVR 214 (340)
T ss_dssp SSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEETT
T ss_pred CccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcC-C-CCceEEEEECCCCCEEEEEe-----CCCcEEEEECC
Confidence 99999999998875 88999999999999999999999999 9 89999999999999999999 89999999997
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEc
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+..+..+. |...|.+++|+ |++ ++|++|+.||.|++||+++++.+..+.. .+...|++++|+|+|++|++|+
T Consensus 215 ~~~~~~~~~~h~~~v~~v~~~--p~~---~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~ 289 (340)
T 1got_B 215 EGMCRQTFTGHESDINAICFF--PNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGY 289 (340)
T ss_dssp TCSEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEE
T ss_pred CCeeEEEEcCCcCCEEEEEEc--CCC---CEEEEEcCCCcEEEEECCCCcEEEEEccCCcccceEEEEECCCCCEEEEEC
Confidence 77777774 77899999999 899 8999999999999999999988887753 2345799999999999999999
Q ss_pred CCCcEEEEEcCCCCCcCeee
Q psy10778 532 TEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.||.|++||+.+.+....+.
T Consensus 290 ~d~~i~vwd~~~~~~~~~~~ 309 (340)
T 1got_B 290 DDFNCNVWDALKADRAGVLA 309 (340)
T ss_dssp TTSEEEEEETTTCCEEEEEE
T ss_pred CCCeEEEEEcccCcEeeEee
Confidence 99999999998877665554
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-32 Score=281.15 Aligned_cols=233 Identities=18% Similarity=0.122 Sum_probs=189.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcc---eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPATP---VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~---~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.++.++.||+|++||+.+++... ....+|.+.|++++|+|++++|++|+.||+|++||+.++ +.+..+
T Consensus 107 ~~l~~s~dg~v~lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~---------~~~~~~ 177 (357)
T 4g56_B 107 GILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK---------AVLKSY 177 (357)
T ss_dssp EEEEEETTSCEEEC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTT---------EEEEEE
T ss_pred CEEEEECCCEEEEeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCC---------cEEEEE
Confidence 56667889999999998765432 233479999999999999999999999999999998866 556788
Q ss_pred eCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeE
Q psy10778 372 LGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPC-VDPNTPVSHVTMSETNG-EIASVLQTTKTGGSIL 448 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I 448 (556)
.+|...|++++|++++. ++++++.||+|++||+++++.+..+.. .+ ...+.+++|+|++. .+++++ .++.|
T Consensus 178 ~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~~~~~~~~~~-~~~v~~v~~sp~~~~~la~g~-----~d~~i 251 (357)
T 4g56_B 178 NAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKPATRIDFCAS-DTIPTSVTWHPEKDDTFACGD-----ETGNV 251 (357)
T ss_dssp CCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSCBCBCCCTTC-CSCEEEEEECTTSTTEEEEEE-----SSSCE
T ss_pred cCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCceeeeeeeccc-cccccchhhhhcccceEEEee-----cccce
Confidence 99999999999999875 889999999999999999887665542 14 67899999999854 677777 89999
Q ss_pred EEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec-CCC
Q psy10778 449 RLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC-DSQ 525 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~-dg~ 525 (556)
++||++ ++.+..+. +...|++++|+ |++. ++|++|+.||+|+|||+.+++.+..+ +|...|++++|+| +++
T Consensus 252 ~~wd~~~~~~~~~~~~~~~~v~~l~~s--p~~~--~~lasgs~D~~i~iwd~~~~~~~~~~--~H~~~V~~vafsP~d~~ 325 (357)
T 4g56_B 252 SLVNIKNPDSAQTSAVHSQNITGLAYS--YHSS--PFLASISEDCTVAVLDADFSEVFRDL--SHRDFVTGVAWSPLDHS 325 (357)
T ss_dssp EEEESSCGGGCEEECCCSSCEEEEEEC--SSSS--CCEEEEETTSCEEEECTTSCEEEEEC--CCSSCEEEEEECSSSTT
T ss_pred eEEECCCCcEeEEEeccceeEEEEEEc--CCCC--CEEEEEeCCCEEEEEECCCCcEeEEC--CCCCCEEEEEEeCCCCC
Confidence 999997 66666664 67899999999 7663 58999999999999999999888776 5999999999998 799
Q ss_pred EEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 526 HLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+|++|+.||.|++|++++..+..
T Consensus 326 ~l~s~s~Dg~v~iW~~~~~~~~~ 348 (357)
T 4g56_B 326 KFTTVGWDHKVLHHHLPSEGRTE 348 (357)
T ss_dssp EEEEEETTSCEEEEECC------
T ss_pred EEEEEcCCCeEEEEECCCCCccc
Confidence 99999999999999998754443
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-31 Score=270.52 Aligned_cols=223 Identities=17% Similarity=0.189 Sum_probs=200.0
Q ss_pred eEEeccCCCeEEEEeCCCCC------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELP------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
++++|+.|+.+++|++.... ....+. .|...|.+++|++++..|++|+.||+|++||+..+ +.+
T Consensus 120 ~lasg~~d~~i~v~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~---------~~~ 189 (354)
T 2pbi_B 120 AIACGGLDNKCSVYPLTFDKNENMAAKKKSVA-MHTNYLSACSFTNSDMQILTASGDGTCALWDVESG---------QLL 189 (354)
T ss_dssp EEEEESTTSEEEEEECCCCTTCCSGGGCEEEE-ECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTC---------CEE
T ss_pred EEEEeeCCCCEEEEEEeccccccccccceeee-ccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCC---------eEE
Confidence 89999999999999986432 122232 69999999999999999999999999999999876 556
Q ss_pred eEeeCCCccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 369 TILLGHSACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
..+.+|...|.+++++| ++..+++|+.||+|++||+++++.+..+.. | ...|.+++|+|++..|++++ .|+
T Consensus 190 ~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~l~s~s-----~D~ 262 (354)
T 2pbi_B 190 QSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFET-H-ESDVNSVRYYPSGDAFASGS-----DDA 262 (354)
T ss_dssp EEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETTTCCEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTS
T ss_pred EEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-C-CCCeEEEEEeCCCCEEEEEe-----CCC
Confidence 88999999999999987 468999999999999999999999999999 9 89999999999999999999 899
Q ss_pred eEEEEEeC-CcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 447 ILRLHTIN-AQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
+|++||++ ++.+..+.. ...+.+++|+ |+| ++|++|+.||.|++||+.+++.+..+. +|...|++++|+|
T Consensus 263 ~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s--~~g---~~l~~g~~d~~i~vwd~~~~~~~~~l~-~h~~~v~~l~~sp 336 (354)
T 2pbi_B 263 TCRLYDLRADREVAIYSKESIIFGASSVDFS--LSG---RLLFAGYNDYTINVWDVLKGSRVSILF-GHENRVSTLRVSP 336 (354)
T ss_dssp CEEEEETTTTEEEEEECCTTCCSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTCSEEEEEC-CCSSCEEEEEECT
T ss_pred eEEEEECCCCcEEEEEcCCCcccceeEEEEe--CCC---CEEEEEECCCcEEEEECCCCceEEEEE-CCCCcEEEEEECC
Confidence 99999998 555555543 3478999999 899 899999999999999999999999887 8999999999999
Q ss_pred CCCEEEEEcCCCcEEEEE
Q psy10778 523 DSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwd 540 (556)
+|++|++|+.||.|++|+
T Consensus 337 dg~~l~sgs~D~~v~vW~ 354 (354)
T 2pbi_B 337 DGTAFCSGSWDHTLRVWA 354 (354)
T ss_dssp TSSCEEEEETTSEEEEEC
T ss_pred CCCEEEEEcCCCCEEecC
Confidence 999999999999999995
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-31 Score=263.50 Aligned_cols=234 Identities=21% Similarity=0.266 Sum_probs=207.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. +|...|.+++|+|++++|++|+.||.|++||+..+ +.+..+.+|
T Consensus 37 ~l~s~~~dg~i~iw~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~---------~~~~~~~~~ 106 (312)
T 4ery_A 37 WLASSSADKLIKIWGAYDGKFEKTIS-GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSG---------KCLKTLKGH 106 (312)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EEEEeeCCCeEEEEeCCCcccchhhc-cCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCC---------cEEEEEcCC
Confidence 88899999999999999887777665 89999999999999999999999999999999865 556788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++|+|+++++++|+.||.|++||+++++.+..+.. | ..+|.+++|+|++..+++++ .|+.|++||++
T Consensus 107 ~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~-----~d~~i~~wd~~ 179 (312)
T 4ery_A 107 SNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPA-H-SDPVSAVHFNRDGSLIVSSS-----YDGLCRIWDTA 179 (312)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEETT
T ss_pred CCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecC-C-CCcEEEEEEcCCCCEEEEEe-----CCCcEEEEECC
Confidence 99999999999999999999999999999999999999998 8 89999999999999999999 89999999997
Q ss_pred -CcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeE---EEEEecCCCEEE
Q psy10778 455 -AQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI---AVTYSCDSQHLY 528 (556)
Q Consensus 455 -g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~---~l~~s~dg~~l~ 528 (556)
++.+..+. +...+.+++|+ |++ ++|++++.||.|++||+.+++.+..+. +|...+. .....+++.+|+
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~ 253 (312)
T 4ery_A 180 SGQCLKTLIDDDNPPVSFVKFS--PNG---KYILAATLDNTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFSVTGGKWIV 253 (312)
T ss_dssp TCCEEEEECCSSCCCEEEEEEC--TTS---SEEEEEETTTEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEECSSSCEEE
T ss_pred CCceeeEEeccCCCceEEEEEC--CCC---CEEEEEcCCCeEEEEECCCCcEEEEEE-ecCCceEEEEEEEEeCCCcEEE
Confidence 67666653 45689999999 899 899999999999999999999999987 5654432 223346789999
Q ss_pred EEcCCCcEEEEEcCCCCCcCeee
Q psy10778 529 ASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+|+.||.|++||+.+++.+..+.
T Consensus 254 sg~~dg~i~vwd~~~~~~~~~~~ 276 (312)
T 4ery_A 254 SGSEDNLVYIWNLQTKEIVQKLQ 276 (312)
T ss_dssp ECCTTSCEEEEETTTCCEEEEEC
T ss_pred EECCCCEEEEEECCCchhhhhhh
Confidence 99999999999999877665554
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-31 Score=267.13 Aligned_cols=226 Identities=16% Similarity=0.216 Sum_probs=202.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|++|++||+.+++....+. +|...|.+++|+|++.+|++|+.|++|++||+.. ..+..+.+|
T Consensus 79 ~l~s~s~D~~v~~wd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~----------~~~~~~~~h 147 (319)
T 3frx_A 79 YALSASWDKTLRLWDVATGETYQRFV-GHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKG----------QCLATLLGH 147 (319)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSCEEEEEETTSCEEEEETTS----------CEEEEECCC
T ss_pred EEEEEeCCCEEEEEECCCCCeeEEEc-cCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCC----------CeEEEEecc
Confidence 89999999999999999988777665 8999999999999999999999999999999863 345778899
Q ss_pred CccEEEEEEccC------CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 375 SACVTDLYLCAG------FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 375 ~~~V~~l~~s~~------~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
...|.+++++|. +..+++++.|++|++||+++++....+.+ | ...|.+++|+|++.+|++++ .|+.|
T Consensus 148 ~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~-h-~~~v~~~~~sp~g~~l~s~~-----~dg~i 220 (319)
T 3frx_A 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIG-H-NSNINTLTASPDGTLIASAG-----KDGEI 220 (319)
T ss_dssp SSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECC-C-CSCEEEEEECTTSSEEEEEE-----TTCEE
T ss_pred CCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecC-C-CCcEEEEEEcCCCCEEEEEe-----CCCeE
Confidence 999999999985 44899999999999999999999999999 9 99999999999999999999 89999
Q ss_pred EEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCCeEEEEE
Q psy10778 449 RLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-------NVALPVIAVTY 520 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~~l~~ 520 (556)
++||++ ++.+..+.....+.+++|+ |++ .+|++++. +.+++|++.....+..+.. .|...+.+++|
T Consensus 221 ~iwd~~~~~~~~~~~~~~~v~~~~~s--p~~---~~la~~~~-~~i~v~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 294 (319)
T 3frx_A 221 MLWNLAAKKAMYTLSAQDEVFSLAFS--PNR---YWLAAATA-TGIKVFSLDPQYLVDDLRPEFAGYSKAAEPHAVSLAW 294 (319)
T ss_dssp EEEETTTTEEEEEEECCSCEEEEEEC--SSS---SEEEEEET-TEEEEEEETTEEEEEEECCCCTTCCGGGCCCEEEEEE
T ss_pred EEEECCCCcEEEEecCCCcEEEEEEc--CCC---CEEEEEcC-CCcEEEEeCcCeeeeccCccccccccCcCcceeEEEE
Confidence 999997 7788888888899999999 888 78888775 4599999988887777652 23567999999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+|||++|++|+.||.|++||+.+.
T Consensus 295 spdg~~l~sg~~Dg~i~vWd~~t~ 318 (319)
T 3frx_A 295 SADGQTLFAGYTDNVIRVWQVMTA 318 (319)
T ss_dssp CTTSSEEEEEETTSCEEEEEEEEC
T ss_pred CCCCCEEEEeecCceEEEEEEeec
Confidence 999999999999999999998764
|
| >4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-31 Score=273.79 Aligned_cols=207 Identities=18% Similarity=0.190 Sum_probs=177.4
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.|...|++++|+++ ..|++|+.||+|+|||+.++.... .....+.+|.+.|++++|+|++++|++|+.||+|++
T Consensus 80 ~~~~~v~~~~~s~d-~~l~~~s~dg~v~lWd~~~~~~~~-----~~~~~~~~H~~~V~~v~~spdg~~l~sgs~d~~i~i 153 (344)
T 4gqb_B 80 QTEAGVADLTWVGE-RGILVASDSGAVELWELDENETLI-----VSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153 (344)
T ss_dssp EESSCEEEEEEETT-TEEEEEETTSEEEEEEECTTSSCE-----EEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEE
T ss_pred ccCCCEEEEEEeCC-CeEEEEECCCEEEEEeccCCCcee-----EeeccccCCCCCEEEEEECCCCCEEEEEeCCCeEEE
Confidence 46678999999998 578899999999999998762110 111345689999999999999999999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEEEeC-CcEEEEee---cCCCeEEEEEeeCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLHTIN-AQLITSLA---SELRITSVTFSNAP 476 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~p 476 (556)
||+.+++.++++.+ | ...|.+++|++++. .+++++ .|++|++||++ ++.+..+. +...+.+++|+ |
T Consensus 154 wd~~~~~~~~~~~~-h-~~~V~~~~~~~~~~~~l~s~s-----~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--p 224 (344)
T 4gqb_B 154 WDLAQQVVLSSYRA-H-AAQVTCVAASPHKDSVFLSCS-----EDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWH--P 224 (344)
T ss_dssp EETTTTEEEEEECC-C-SSCEEEEEECSSCTTEEEEEE-----TTSCEEEEETTSSSCEEECC----CCCEEEEEEC--S
T ss_pred EECCCCcEEEEEcC-c-CCceEEEEecCCCCCceeeec-----cccccccccccccceeeeeecceeeccceeeeec--C
Confidence 99999999999999 9 99999999999985 567888 89999999997 77666653 45678999999 6
Q ss_pred CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCC
Q psy10778 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
++. ++|++|+.||.|++||+++++++..+. +|...|++++|+|++ ++|++|+.||.|+|||+.+++.
T Consensus 225 ~~~--~~l~sg~~dg~v~~wd~~~~~~~~~~~-~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~ 292 (344)
T 4gqb_B 225 QQS--EVFVFGDENGTVSLVDTKSTSCVLSSA-VHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSEL 292 (344)
T ss_dssp SCT--TEEEEEETTSEEEEEESCC--CCEEEE-CCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEE
T ss_pred CCC--cceEEeccCCcEEEEECCCCcEEEEEc-CCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcE
Confidence 432 789999999999999999999999998 899999999999998 5799999999999999988654
|
| >2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-30 Score=267.64 Aligned_cols=241 Identities=15% Similarity=0.223 Sum_probs=210.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|++|+.||+|++||..+++....+. .|...|.+++|+|+|..+++|+.|+.+++|++........ ......+.+|
T Consensus 78 ~l~s~s~Dg~v~vWd~~~~~~~~~~~-~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~~~~~~~~~~---~~~~~~~~~h 153 (354)
T 2pbi_B 78 RIVSSSQDGKVIVWDSFTTNKEHAVT-MPCTWVMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENM---AAKKKSVAMH 153 (354)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCEEEECTTSSEEEEESTTSEEEEEECCCCTTCCS---GGGCEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCCcceEEe-cCCCCEEEEEECCCCCEEEEeeCCCCEEEEEEeccccccc---cccceeeecc
Confidence 89999999999999998887766665 6888999999999999999999999999999875421111 1345678899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC--CCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE--TNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp--~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
...|.+++|++++..|++++.||+|++||+.+++.+..+.+ | ...|.+++++| ++..+++++ .|+.|++||
T Consensus 154 ~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~-h-~~~v~~~~~~~~~~g~~l~sgs-----~Dg~v~~wd 226 (354)
T 2pbi_B 154 TNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG-H-GADVLCLDLAPSETGNTFVSGG-----CDKKAMVWD 226 (354)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-C-SSCEEEEEECCCSSCCEEEEEE-----TTSCEEEEE
T ss_pred CCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcC-C-CCCeEEEEEEeCCCCCEEEEEe-----CCCeEEEEE
Confidence 99999999999999999999999999999999999999999 9 89999999987 467999999 899999999
Q ss_pred eC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEE
Q psy10778 453 IN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~s 529 (556)
++ ++.+..+. |...|.+++|+ |++ ++|++|+.||+|++||++.++.+..+.. .+...+++++|+|++++|++
T Consensus 227 ~~~~~~~~~~~~h~~~v~~v~~~--p~~---~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~ 301 (354)
T 2pbi_B 227 MRSGQCVQAFETHESDVNSVRYY--PSG---DAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFA 301 (354)
T ss_dssp TTTCCEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEE
T ss_pred CCCCcEEEEecCCCCCeEEEEEe--CCC---CEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEE
Confidence 97 77777774 77899999999 888 8999999999999999999888777753 23457899999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCeee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|+.||.|++||+.+++.+..+.
T Consensus 302 g~~d~~i~vwd~~~~~~~~~l~ 323 (354)
T 2pbi_B 302 GYNDYTINVWDVLKGSRVSILF 323 (354)
T ss_dssp EETTSCEEEEETTTCSEEEEEC
T ss_pred EECCCcEEEEECCCCceEEEEE
Confidence 9999999999998877655443
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-31 Score=267.05 Aligned_cols=235 Identities=16% Similarity=0.179 Sum_probs=189.8
Q ss_pred eEEeccCCCeEEEEeCCCCCC--cceEcCC-CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKELPA--TPVIRPP-LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~--~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
+|++|+.|++|++|++..+.. ...+..+ |...|++++|+|++++|++|+.|++|++|++...... ....+.+..+
T Consensus 26 ~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~--~~~~~~~~~~ 103 (330)
T 2hes_X 26 ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADR--TFEMDLLAII 103 (330)
T ss_dssp EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCEEEEEC---------CCCEEEEEE
T ss_pred EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCc--cccceeEEEE
Confidence 889999999999999987532 3334234 9999999999999999999999999999998643110 0111345678
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC----CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT----IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~----~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
.+|...|.+++|+|++++|++|+.|++|++||++. .+.+..+.. | ...|.+++|+|++..|++++ .|++
T Consensus 104 ~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~l~s~s-----~D~~ 176 (330)
T 2hes_X 104 EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQE-H-SQDVKHVIWHPSEALLASSS-----YDDT 176 (330)
T ss_dssp C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECC-C-SSCEEEEEECSSSSEEEEEE-----TTSC
T ss_pred cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEecc-C-CCceEEEEECCCCCEEEEEc-----CCCe
Confidence 89999999999999999999999999999999943 256778888 9 89999999999999999999 8999
Q ss_pred EEEEEeC-C--cEEEEe-ecCCCeEEEEEeeCCC--CCcceEEEEEeCCCeEEEEeCCCC--------eEEEEecCCCCC
Q psy10778 448 LRLHTIN-A--QLITSL-ASELRITSVTFSNAPE--GVSQNVIVTGHSDGTIQLWSGYKL--------AHLLTLNTNVAL 513 (556)
Q Consensus 448 I~iwdi~-g--~~i~~~-~~~~~i~~i~~s~~pd--g~~~~~l~tg~~dg~I~iwd~~~~--------~~~~~~~~~h~~ 513 (556)
|++||.+ + +.+..+ .|...|.+++|+ |+ + ..|++|+.|++|++||+..+ .....+...|..
T Consensus 177 i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~~~---~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~ 251 (330)
T 2hes_X 177 VRIWKDYDDDWECVAVLNGHEGTVWSSDFD--KTEGV---FRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKR 251 (330)
T ss_dssp EEEEEEETTEEEEEEEECCCSSCEEEEEEC--CSSSS---CEEEEEETTSCEEEEEEEEECTTSCEEEEEEEECCSCCSS
T ss_pred EEEEECCCCCeeEEEEccCCCCcEEEEEec--CCCCe---eEEEEEeCCCeEEEEEecCCCccccceeEEeeeccccccc
Confidence 9999986 3 455555 478899999999 55 6 68999999999999998654 445555534889
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.|.+++|++++ .|++++.||.|++|+..++
T Consensus 252 ~v~~v~~s~~~-~l~s~~~dg~v~iw~~~~~ 281 (330)
T 2hes_X 252 QVYNVAWGFNG-LIASVGADGVLAVYEEVDG 281 (330)
T ss_dssp CEEEEEECTTS-CEEEEETTSCEEEEEEETT
T ss_pred ceEEEEEcCCC-EEEEEeCCCEEEEEEcCCC
Confidence 99999999765 7899999999999998765
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-30 Score=268.40 Aligned_cols=226 Identities=15% Similarity=0.174 Sum_probs=197.9
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++|+.|+.|++||..+++....+. +|...|++++|+|++++|++|+.|++|++||+.++ +....+ .
T Consensus 136 ~~l~s~~~d~~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~---------~~~~~~-~ 204 (393)
T 1erj_A 136 KFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---------QCSLTL-S 204 (393)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEE-E
T ss_pred CEEEEEcCCCeEEEEECCCCcEEEEEc-cCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCC---------eeEEEE-E
Confidence 389999999999999999887766665 89999999999999999999999999999998765 222333 3
Q ss_pred CCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEe-------CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 374 HSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREI-------PCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 374 h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l-------~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
+...+.+++|+| +++++++|+.||+|++||+++++.+..+ .+ | ...|.+++|+|++..|++++ .|
T Consensus 205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~-h-~~~v~~v~~~~~g~~l~s~s-----~d 277 (393)
T 1erj_A 205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG-H-KDSVYSVVFTRDGQSVVSGS-----LD 277 (393)
T ss_dssp CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC-C-SSCEEEEEECTTSSEEEEEE-----TT
T ss_pred cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCC-C-CCCEEEEEECCCCCEEEEEe-----CC
Confidence 667899999999 8999999999999999999999888776 45 7 78999999999999999999 89
Q ss_pred CeEEEEEeCC-------------cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q psy10778 446 SILRLHTINA-------------QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV 511 (556)
Q Consensus 446 ~~I~iwdi~g-------------~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h 511 (556)
+.|++||++. .....+ .|...|.+++|+ +++ .+|++|+.||.|++||..+++.+..+. +|
T Consensus 278 ~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~--~~~---~~l~sgs~D~~v~iwd~~~~~~~~~l~-~h 351 (393)
T 1erj_A 278 RSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT--QND---EYILSGSKDRGVLFWDKKSGNPLLMLQ-GH 351 (393)
T ss_dssp SEEEEEEC---------------CEEEEEECCSSCEEEEEEC--GGG---CEEEEEETTSEEEEEETTTCCEEEEEE-CC
T ss_pred CEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEEEEC--CCC---CEEEEEeCCCeEEEEECCCCeEEEEEC-CC
Confidence 9999999852 122233 467889999999 888 899999999999999999999999998 89
Q ss_pred CCCeEEEEEec------CCCEEEEEcCCCcEEEEEcCC
Q psy10778 512 ALPVIAVTYSC------DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 512 ~~~V~~l~~s~------dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
...|.+++|++ ++.+|++|+.||.|++|++++
T Consensus 352 ~~~v~~v~~~~~~~~~p~~~~l~sgs~Dg~i~iW~~~~ 389 (393)
T 1erj_A 352 RNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYKK 389 (393)
T ss_dssp SSCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred CCCEEEEEecCCcCcCCCCCEEEEECCCCcEEECcccc
Confidence 99999999986 688999999999999999865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.5e-30 Score=266.24 Aligned_cols=231 Identities=15% Similarity=0.210 Sum_probs=197.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCc--ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPAT--PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~--~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|++|+.|++|++|+..++... .....+|...|++++|+|++++|++|+.|++|++|+..... .+.+..+.
T Consensus 30 ~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~-------~~~~~~~~ 102 (345)
T 3fm0_A 30 LLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDD-------FECVTTLE 102 (345)
T ss_dssp CEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC--------EEEEEEEC
T ss_pred EEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCC-------eEEEEEcc
Confidence 8999999999999999876533 22334799999999999999999999999999999987541 12356789
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+|...|.+++|+|++++|++|+.|++|++||+.++ +.+..+.. | ...|.+++|+|++..|++++ .|+.|+
T Consensus 103 ~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~-h-~~~v~~~~~~p~~~~l~s~s-----~d~~i~ 175 (345)
T 3fm0_A 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS-H-TQDVKHVVWHPSQELLASAS-----YDDTVK 175 (345)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECC-C-CSCEEEEEECSSSSCEEEEE-----TTSCEE
T ss_pred CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecC-c-CCCeEEEEECCCCCEEEEEe-----CCCcEE
Confidence 99999999999999999999999999999999875 34667888 8 89999999999999999999 899999
Q ss_pred EEEeC-Cc--EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC---------------CeEEEEecCC
Q psy10778 450 LHTIN-AQ--LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK---------------LAHLLTLNTN 510 (556)
Q Consensus 450 iwdi~-g~--~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~---------------~~~~~~~~~~ 510 (556)
+||.+ ++ ....+ .|...|.+++|+ |+| ++|++|+.||+|++||... .+++..+...
T Consensus 176 ~w~~~~~~~~~~~~~~~h~~~v~~l~~s--p~g---~~l~s~s~D~~v~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (345)
T 3fm0_A 176 LYREEEDDWVCCATLEGHESTVWSLAFD--PSG---QRLASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGF 250 (345)
T ss_dssp EEEEETTEEEEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEEEECTTCTTCCCCC---CEEEEEEEECSS
T ss_pred EEEecCCCEEEEEEecCCCCceEEEEEC--CCC---CEEEEEeCCCeEEEeccccCCCCccceeeccCCccceeEEecCC
Confidence 99997 43 23344 477899999999 899 8999999999999999632 2345556534
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
|...|.+++|++++..|++++.|+.|++|+....
T Consensus 251 h~~~v~~v~~~~~~~~l~s~~~d~~i~vw~~~~~ 284 (345)
T 3fm0_A 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPN 284 (345)
T ss_dssp CSSCEEEEEECTTTCCEEEEETTSCEEEEEECTT
T ss_pred CCCcEEEEEEecCCCEEEEEeCCCeEEEEEeCCC
Confidence 8899999999999999999999999999998764
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.98 E-value=6.2e-30 Score=255.88 Aligned_cols=232 Identities=13% Similarity=0.142 Sum_probs=191.6
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+|++|+.|++|++|+..+. +....+. +|.+.|++++|+++ +++|++|+.||+|++||+..+. ...+..
T Consensus 23 ~las~s~D~~v~iw~~~~~~~~~~~~l~-gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~-------~~~~~~ 94 (297)
T 2pm7_B 23 RMATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGR-------WSQIAV 94 (297)
T ss_dssp EEEEEETTSCEEEEEBCSSCBCCCEEEC-CCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSC-------BCCCEE
T ss_pred EEEEEeCCCEEEEEecCCCCcEEEEEEc-cccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCc-------eEEEEE
Confidence 8999999999999999743 4455554 89999999999864 8999999999999999987541 134567
Q ss_pred eeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCC-------------CCe
Q psy10778 371 LLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSET-------------NGE 433 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~-------------~~~ 433 (556)
+.+|...|.+++|+|+ +.+|++|+.||+|++||++++. ....+.. | ...|.+++|+|+ +..
T Consensus 95 ~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~-h-~~~v~~~~~~p~~~~~~~~~~~~~~~~~ 172 (297)
T 2pm7_B 95 HAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDA-H-AIGVNSASWAPATIEEDGEHNGTKESRK 172 (297)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEEC-C-SSCEEEEEECCCC------------CCE
T ss_pred eecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeec-c-cCccceEeecCCcccccccCCCCCCcce
Confidence 8899999999999997 8899999999999999998763 2456677 8 889999999997 468
Q ss_pred EEEEeecCcCCCCeEEEEEeC-Cc----EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe---EE
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQ----LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA---HL 504 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~----~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~---~~ 504 (556)
|++++ .|++|++||++ ++ +...+ .|...|.+++|+ |++....+|++|+.|++|++||+.... ..
T Consensus 173 l~sgs-----~D~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~s--p~~~~~~~las~s~D~~v~iWd~~~~~~~~~~ 245 (297)
T 2pm7_B 173 FVTGG-----ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLRSYMASVSQDRTCIIWTQDNEQGPWKK 245 (297)
T ss_dssp EEEEE-----TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSSEEEEEEETTSCEEEEEESSTTSCCEE
T ss_pred EEEEc-----CCCcEEEEEEcCCCceEEEEEEecCCCCceEEEEEC--CCCCCceEEEEEECCCcEEEEEeCCCCCccce
Confidence 99999 89999999997 43 44455 477899999999 663111799999999999999987643 22
Q ss_pred EEec-CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 505 LTLN-TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 505 ~~~~-~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
..+. ..|...|.+++|+|++++|++++.||.|++|+...
T Consensus 246 ~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~v~lw~~~~ 285 (297)
T 2pm7_B 246 TLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENL 285 (297)
T ss_dssp EESSSSCCSSCEEEEEECSSSCCEEEEETTSCEEEEEECT
T ss_pred eeeecccCCCcEEEEEECCCCCEEEEEcCCCcEEEEEECC
Confidence 2331 26788999999999999999999999999999874
|
| >3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R* | Back alignment and structure |
|---|
Probab=99.98 E-value=2.3e-30 Score=261.80 Aligned_cols=225 Identities=17% Similarity=0.200 Sum_probs=197.7
Q ss_pred eEEeccCCCeEEEEeCCCCCC-----cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPA-----TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-----~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+|++|+.|++|++|++..... ...+. +|...|++++|+|++++|++|+.|++|++||+.++ +.+.
T Consensus 32 ~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~---------~~~~ 101 (319)
T 3frx_A 32 LLLSASRDKTLISWKLTGDDQKFGVPVRSFK-GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATG---------ETYQ 101 (319)
T ss_dssp EEEEEETTSEEEEEEEEEETTEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEE
T ss_pred EEEEecCCccEEEecCCCCCccccccceEEe-CCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCC---------CeeE
Confidence 899999999999999864322 22333 89999999999999999999999999999999876 4567
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC------CCeEEEEeecCcC
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET------NGEIASVLQTTKT 443 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~------~~~i~s~s~~~~~ 443 (556)
.+.+|...|.+++|+|++.++++|+.||+|++||++ ++.+..+.+ | ...|.+++++|. +..+++++
T Consensus 102 ~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~-~~~~~~~~~-h-~~~v~~~~~~~~~~~~~~~~~l~s~~----- 173 (319)
T 3frx_A 102 RFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLG-H-NDWVSQVRVVPNEKADDDSVTIISAG----- 173 (319)
T ss_dssp EEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT-SCEEEEECC-C-SSCEEEEEECCC------CCEEEEEE-----
T ss_pred EEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC-CCeEEEEec-c-CCcEEEEEEccCCCCCCCccEEEEEe-----
Confidence 889999999999999999999999999999999997 567888888 8 899999999985 44789998
Q ss_pred CCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 444 GGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
.|+.|++||++ ++....+ .|...|.+++|+ |+| ++|++|+.||.|++||+.+++.+..+. +...|.+++|+
T Consensus 174 ~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~s--p~g---~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s 246 (319)
T 3frx_A 174 NDKMVKAWNLNQFQIEADFIGHNSNINTLTAS--PDG---TLIASAGKDGEIMLWNLAAKKAMYTLS--AQDEVFSLAFS 246 (319)
T ss_dssp TTSCEEEEETTTTEEEEEECCCCSCEEEEEEC--TTS---SEEEEEETTCEEEEEETTTTEEEEEEE--CCSCEEEEEEC
T ss_pred CCCEEEEEECCcchhheeecCCCCcEEEEEEc--CCC---CEEEEEeCCCeEEEEECCCCcEEEEec--CCCcEEEEEEc
Confidence 89999999998 5655555 578899999999 899 899999999999999999999999997 35789999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
|++.+|++++.+ .+++|++....
T Consensus 247 p~~~~la~~~~~-~i~v~~~~~~~ 269 (319)
T 3frx_A 247 PNRYWLAAATAT-GIKVFSLDPQY 269 (319)
T ss_dssp SSSSEEEEEETT-EEEEEEETTEE
T ss_pred CCCCEEEEEcCC-CcEEEEeCcCe
Confidence 999999988755 59999987644
|
| >2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A | Back alignment and structure |
|---|
Probab=99.98 E-value=5.4e-30 Score=257.17 Aligned_cols=227 Identities=14% Similarity=0.114 Sum_probs=197.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|++|++||..+++....+. +|.+.|++++|+|++++|++|+.||+|++||+..+. .....+.+|
T Consensus 69 ~l~s~s~d~~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~--------~~~~~~~~h 139 (304)
T 2ynn_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--------ALEQTFEGH 139 (304)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTT--------EEEEEECCC
T ss_pred EEEEECCCCEEEEEECCCCcEEEEEe-CCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCc--------chhhhhccc
Confidence 89999999999999999988777776 899999999999999999999999999999987541 223568899
Q ss_pred CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC--CCCeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE--TNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp--~~~~i~s~s~~~~~~d~~I~iw 451 (556)
...|.+++|+| ++..+++|+.||+|++||++++.....+...| ...+..++++| ++.++++++ .|++|++|
T Consensus 140 ~~~v~~v~~~p~~~~~l~sgs~D~~v~iwd~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~l~s~s-----~D~~i~iW 213 (304)
T 2ynn_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQ-ERGVNYVDYYPLPDKPYMITAS-----DDLTIKIW 213 (304)
T ss_dssp CSCEEEEEECTTCTTEEEEEETTSEEEEEETTCSSCSEEEECCC-TTCEEEEEECCSTTCCEEEEEE-----TTSEEEEE
T ss_pred CCcEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCccceeccCC-cCcEEEEEEEEcCCCCEEEEEc-----CCCeEEEE
Confidence 99999999999 67899999999999999998877666654415 67899999987 677999999 89999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC--EE
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ--HL 527 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l 527 (556)
|++ ++++..+. |...|.+++|+ |++ ++|++|+.||.|++||+.+++.+..+. .|...+.+++++|++. ++
T Consensus 214 d~~~~~~~~~~~~h~~~v~~~~~~--p~~---~~l~s~s~Dg~i~iWd~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 287 (304)
T 2ynn_A 214 DYQTKSCVATLEGHMSNVSFAVFH--PTL---PIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYI 287 (304)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEC--SSS---SEEEEEETTSCEEEEETTTCCEEEEEC-CSSSSEEEEEECTTCGGGCE
T ss_pred eCCCCccceeeCCCCCCEEEEEEC--CCC---CEEEEEcCCCeEEEEECCCCceeeecc-CCCccEEEEEECCCCCceEE
Confidence 998 77777775 77899999999 888 899999999999999999999999998 7889999999999885 57
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
++|+.| .+.+|++.+
T Consensus 288 asg~~~-g~~~~~~~~ 302 (304)
T 2ynn_A 288 ASGFDN-GFTVLSLGN 302 (304)
T ss_dssp EEEETT-EEEEEECC-
T ss_pred EEecCC-ceEEEEecc
Confidence 777655 577888765
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=270.03 Aligned_cols=232 Identities=19% Similarity=0.255 Sum_probs=198.5
Q ss_pred ceEEeccCCCeEEEEeCCCCC------CcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 294 GMICWNECDNLIRLKMSKELP------ATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~------~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
.++++|+.|+.+++|++.+.. .......+|.+.|.+++|+|+ +..|++|+.|++|++||+.++ +
T Consensus 121 ~~las~~~d~~v~iw~~~~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~---------~ 191 (380)
T 3iz6_a 121 QSVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTG---------Q 191 (380)
T ss_dssp SEEEECCSSSCCEEEECCCCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTC---------C
T ss_pred CEEEEeeCCCcEEEEECCCCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCC---------c
Confidence 389999999999999986432 111222389999999999997 457999999999999999865 2
Q ss_pred CCeEe-----eCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCC-CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 367 PPTIL-----LGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDIN-TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 367 ~~~~l-----~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~-~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
.+..+ .+|...|.+++|++ ++.++++|+.||+|++||++ .++.++.+.+ | ...|.+++|+|++..|++++
T Consensus 192 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~l~s~s- 268 (380)
T 3iz6_a 192 RISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHG-H-EGDINSVKFFPDGQRFGTGS- 268 (380)
T ss_dssp EEEEECCCSSSSCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECC-C-SSCCCEEEECTTSSEEEEEC-
T ss_pred EEEEeecccCCCCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECC-c-CCCeEEEEEecCCCeEEEEc-
Confidence 23333 68999999999987 78899999999999999998 4577888998 9 99999999999999999999
Q ss_pred cCcCCCCeEEEEEeC-CcEEEEeecC--------CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec--
Q psy10778 440 TTKTGGSILRLHTIN-AQLITSLASE--------LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-- 508 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~-g~~i~~~~~~--------~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~-- 508 (556)
.|++|++||++ ++.+..+... ..+++++|+ |+| ++|++|+.||.|++||+..++.+..+.
T Consensus 269 ----~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g---~~l~~g~~dg~i~vwd~~~~~~~~~~~~~ 339 (380)
T 3iz6_a 269 ----DDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS--ISG---RLLFAGYSNGDCYVWDTLLAEMVLNLGTL 339 (380)
T ss_dssp ----SSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--SSS---SEEEEECTTSCEEEEETTTCCEEEEECCS
T ss_pred ----CCCeEEEEECCCCcEEEEecccccccccccCceEEEEEC--CCC---CEEEEEECCCCEEEEECCCCceEEEEecc
Confidence 89999999998 7777666421 248999999 899 899999999999999999998887773
Q ss_pred -CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 509 -TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 509 -~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
.+|...|++++|+|+|++|++|+.||.|++|++...++
T Consensus 340 ~~~h~~~v~~l~~s~dg~~l~sgs~D~~i~iW~~~~~~~ 378 (380)
T 3iz6_a 340 QNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFSGHRK 378 (380)
T ss_dssp CSSCCCCCCEEEECSSSSEEEEECTTSCEEEEECCSSSS
T ss_pred cCCCCCceEEEEECCCCCEEEEeeCCCCEEEEecCCCcc
Confidence 27899999999999999999999999999999987644
|
| >2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=2.6e-30 Score=262.77 Aligned_cols=230 Identities=14% Similarity=0.144 Sum_probs=183.1
Q ss_pred eEEeccCCCeEEEEeCCCC-------CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKEL-------PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-------~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+|++|+.|++|++|+.... +....+ .+|.+.|++++|+|++++|++|+.|++|++||+...... .+.
T Consensus 72 ~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~-~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~-----~~~ 145 (330)
T 2hes_X 72 LLAAGSFDSTVSIWAKEESADRTFEMDLLAII-EGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEE-----YEC 145 (330)
T ss_dssp EEEEEETTSCEEEEEC-------CCCEEEEEE-C----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCC-----CEE
T ss_pred EEEEEeCCCcEEEEEcccCcCccccceeEEEE-cCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCC-----eEE
Confidence 8999999999999998532 122233 379999999999999999999999999999998532111 123
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC--eEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcC
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI--GYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKT 443 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~--~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~ 443 (556)
+..+.+|...|.+++|+|++.+|++|+.||+|++||+.++ +.+..+.+ | ...|.+++|+|+ +..+++++
T Consensus 146 ~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~l~s~s----- 218 (330)
T 2hes_X 146 ISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNG-H-EGTVWSSDFDKTEGVFRLCSGS----- 218 (330)
T ss_dssp EEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECC-C-SSCEEEEEECCSSSSCEEEEEE-----
T ss_pred EEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC-C-CCcEEEEEecCCCCeeEEEEEe-----
Confidence 4678899999999999999999999999999999999876 67888998 9 899999999998 66899998
Q ss_pred CCCeEEEEEeCC---------cEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--EEEEecCC
Q psy10778 444 GGSILRLHTINA---------QLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--HLLTLNTN 510 (556)
Q Consensus 444 ~d~~I~iwdi~g---------~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~~~ 510 (556)
.|++|++||+++ .....+. |...|.+++|+ +++ +|++|+.||.|++||..+++ .......+
T Consensus 219 ~D~~v~iw~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~s--~~~----~l~s~~~dg~v~iw~~~~~~~~~~~~~~~~ 292 (330)
T 2hes_X 219 DDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWG--FNG----LIASVGADGVLAVYEEVDGEWKVFAKRALC 292 (330)
T ss_dssp TTSCEEEEEEEEECTTSCEEEEEEEECCSCCSSCEEEEEEC--TTS----CEEEEETTSCEEEEEEETTEEEEEEEESCT
T ss_pred CCCeEEEEEecCCCccccceeEEeeecccccccceEEEEEc--CCC----EEEEEeCCCEEEEEEcCCCceEEEeccccc
Confidence 899999999963 2333332 67899999999 664 79999999999999987774 34343236
Q ss_pred CCC-CeEEEEEec--CCCEEEEEcCCCcEEEEEcCC
Q psy10778 511 VAL-PVIAVTYSC--DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 511 h~~-~V~~l~~s~--dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|.. .|.+++|+| ++++|++|+.||.|++|++++
T Consensus 293 h~~~~v~~v~~~~~~~~~~las~s~Dg~v~~W~~~~ 328 (330)
T 2hes_X 293 HGVYEINVVKWLELNGKTILATGGDDGIVNFWSLEK 328 (330)
T ss_dssp TTTSCEEEEEEC-----CCEEEEETTSEEEEEEC--
T ss_pred cccceEEEEEEecCCCceEEEEecCCCcEEEEEecc
Confidence 776 899999999 789999999999999999865
|
| >3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.98 E-value=7e-30 Score=261.19 Aligned_cols=238 Identities=13% Similarity=0.141 Sum_probs=194.0
Q ss_pred ceEEeccCCCeEEEEeCCCCCC--cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 294 GMICWNECDNLIRLKMSKELPA--TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~--~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.+|++|+.|+++++|+...+.. ...+. +|...|++++|+|++++|++|+.|++|++||+..... ...+..+
T Consensus 74 ~~l~s~s~D~~v~iw~~~~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~------~~~~~~~ 146 (345)
T 3fm0_A 74 NYLASASFDATTCIWKKNQDDFECVTTLE-GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDE------YECVSVL 146 (345)
T ss_dssp SEEEEEETTSCEEEEEECCC-EEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSC------EEEEEEE
T ss_pred CEEEEEECCCcEEEEEccCCCeEEEEEcc-CCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCC------eEEEEEe
Confidence 3899999999999999876643 33333 7999999999999999999999999999999975411 1234678
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
.+|...|.+++|+|++++|++|+.|++|++||+.+++ ...++.+ | ...|.+++|+|++.+|++++ .|++|+
T Consensus 147 ~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~-h-~~~v~~l~~sp~g~~l~s~s-----~D~~v~ 219 (345)
T 3fm0_A 147 NSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEG-H-ESTVWSLAFDPSGQRLASCS-----DDRTVR 219 (345)
T ss_dssp CCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEE
T ss_pred cCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecC-C-CCceEEEEECCCCCEEEEEe-----CCCeEE
Confidence 8999999999999999999999999999999998875 4567888 9 89999999999999999999 899999
Q ss_pred EEEeC--C--------------cEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--------E
Q psy10778 450 LHTIN--A--------------QLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--------H 503 (556)
Q Consensus 450 iwdi~--g--------------~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--------~ 503 (556)
+|+.. + +.+..+. |...|.+++|+ +++ ..|++++.|+.|++|+..... .
T Consensus 220 iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~~---~~l~s~~~d~~i~vw~~~~~~~~~~~~~~~ 294 (345)
T 3fm0_A 220 IWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWC--QLT---GALATACGDDAIRVFQEDPNSDPQQPTFSL 294 (345)
T ss_dssp EEEEECTTCTTCCCCC---CEEEEEEEECSSCSSCEEEEEEC--TTT---CCEEEEETTSCEEEEEECTTSCTTSCCEEE
T ss_pred EeccccCCCCccceeeccCCccceeEEecCCCCCcEEEEEEe--cCC---CEEEEEeCCCeEEEEEeCCCCCcceeeEEE
Confidence 99973 1 1233332 56789999999 888 799999999999999976432 1
Q ss_pred EEEecCCCCCCeEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 504 LLTLNTNVALPVIAVTYSCDS-QHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 504 ~~~~~~~h~~~V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
......+|...|++++|+|++ .+|++|+.||.|++|++.++++...+
T Consensus 295 ~~~~~~~h~~~V~~v~~~p~~~~~laS~s~Dg~v~~W~~~~~~~~~~~ 342 (345)
T 3fm0_A 295 TAHLHQAHSQDVNCVAWNPKEPGLLASCSDDGEVAFWKYQRPEGLHHH 342 (345)
T ss_dssp EEEETTSSSSCEEEEEECSSSTTEEEEEETTSCEEEEEECC-------
T ss_pred EeeecccccCcEeEeEEeCCCceEEEEcCCCCcEEEEEecCCCCcccc
Confidence 222223789999999999998 59999999999999999987765443
|
| >1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 | Back alignment and structure |
|---|
Probab=99.98 E-value=4.4e-30 Score=267.48 Aligned_cols=233 Identities=19% Similarity=0.222 Sum_probs=199.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC-----------------CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeecc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP-----------------LGATIATATTAPDCHTLWLGLTSGNILVYEYELNA 357 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~-----------------h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~ 357 (556)
++++|+ |+.+++|+..+++....+... +...|++++|+|+|++|++|+.||+|++||+..+
T Consensus 78 ~la~g~-~~~v~i~~~~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~- 155 (393)
T 1erj_A 78 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR- 155 (393)
T ss_dssp EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred EEEEEc-CCcEEEEEecCCCEEEEecCccccccccccccccccCCCceeEEEEEECCCCCEEEEEcCCCeEEEEECCCC-
Confidence 777776 789999999888766554311 1224999999999999999999999999998765
Q ss_pred CcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEE
Q psy10778 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIAS 436 (556)
Q Consensus 358 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s 436 (556)
+.+..+.+|...|++++|+|+++.|++|+.||+|++||+++++....+.. ...+.+++++| ++.++++
T Consensus 156 --------~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~l~~ 224 (393)
T 1erj_A 156 --------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI---EDGVTTVAVSPGDGKYIAA 224 (393)
T ss_dssp --------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSTTCCEEEE
T ss_pred --------cEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEc---CCCcEEEEEECCCCCEEEE
Confidence 45578899999999999999999999999999999999999998888876 57899999999 8899999
Q ss_pred EeecCcCCCCeEEEEEeC-CcEEEEe--------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC------
Q psy10778 437 VLQTTKTGGSILRLHTIN-AQLITSL--------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL------ 501 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~-g~~i~~~--------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~------ 501 (556)
++ .|+.|++||++ +..+..+ .|...|.+++|+ |+| ++|++|+.||.|++||+.+.
T Consensus 225 ~s-----~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~--~~g---~~l~s~s~d~~v~~wd~~~~~~~~~~ 294 (393)
T 1erj_A 225 GS-----LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--RDG---QSVVSGSLDRSVKLWNLQNANNKSDS 294 (393)
T ss_dssp EE-----TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC--TTS---SEEEEEETTSEEEEEEC---------
T ss_pred Ec-----CCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEEC--CCC---CEEEEEeCCCEEEEEECCCCCCcccc
Confidence 99 89999999997 6666554 356789999999 899 89999999999999998753
Q ss_pred ------eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 502 ------AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 502 ------~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+...+. +|...|.+++|++++.+|++|+.||.|++||+.+++.+..+.
T Consensus 295 ~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~ 349 (393)
T 1erj_A 295 KTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 349 (393)
T ss_dssp ------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred cCCCCCcceEEEe-cccCcEEEEEECCCCCEEEEEeCCCeEEEEECCCCeEEEEEC
Confidence 3445565 789999999999999999999999999999999877665554
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.2e-30 Score=280.99 Aligned_cols=228 Identities=16% Similarity=0.232 Sum_probs=199.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCc--ceEcCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPAT--PVIRPPLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~--~~~~~~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
+|++|+.||+|+|||..+++.. ..+ .+|.+.|.+++|+|+|+.|++++.+ +.|++||. + +..
T Consensus 73 ~lasg~~d~~v~lWd~~~~~~~~~~~~-~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd~--~---------~~~ 140 (611)
T 1nr0_A 73 YCASGDVHGNVRIWDTTQTTHILKTTI-PVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDT--G---------TSN 140 (611)
T ss_dssp EEEEEETTSEEEEEESSSTTCCEEEEE-ECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTT--C---------CBC
T ss_pred EEEEEeCCCCEEEeECCCCcceeeEee-cccCCceEEEEECCCCCEEEEEECCCCceeEEEEeeC--C---------CCc
Confidence 8999999999999999754432 233 3799999999999999999998865 47888873 2 334
Q ss_pred eEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 369 TILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
..+.+|...|++++|+|++. .|++|+.|++|++||..+++.+.++.+ | ...|.+++|+|++..|++++ .|++
T Consensus 141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~-H-~~~V~~v~fspdg~~las~s-----~D~~ 213 (611)
T 1nr0_A 141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-H-TKFVHSVRYNPDGSLFASTG-----GDGT 213 (611)
T ss_dssp BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSC
T ss_pred ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeecc-c-cCceEEEEECCCCCEEEEEE-----CCCc
Confidence 67889999999999999987 699999999999999999999999999 9 99999999999999999999 8999
Q ss_pred EEEEEeC-CcEEEEe--------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec----------
Q psy10778 448 LRLHTIN-AQLITSL--------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN---------- 508 (556)
Q Consensus 448 I~iwdi~-g~~i~~~--------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~---------- 508 (556)
|++||+. ++.+..+ .|...|.+++|+ |+| ++|++|+.|++|++||+.+++.+..+.
T Consensus 214 i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s--pdg---~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~ 288 (611)
T 1nr0_A 214 IVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDG---TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQL 288 (611)
T ss_dssp EEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEE
T ss_pred EEEEECCCCcEeeeeccccccccccCCCEEEEEEC--CCC---CEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeE
Confidence 9999986 7777776 477899999999 899 899999999999999998877654432
Q ss_pred --------------------------------CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 509 --------------------------------TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 509 --------------------------------~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
.+|...|++++|+|+|++|++++.||.|++||+.++..
T Consensus 289 ~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~ 358 (611)
T 1nr0_A 289 GIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS 358 (611)
T ss_dssp EEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE
T ss_pred EEEEcCCEEEEEeCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCce
Confidence 16889999999999999999999999999999988654
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=259.29 Aligned_cols=228 Identities=15% Similarity=0.155 Sum_probs=192.3
Q ss_pred eEEeccCCCeEEEEeCCCCCC-------cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPA-------TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-------~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+|++|+.|++|++|++.+.+. ...+ .+|...|++++|+|++.++++|+.|++|++||+.++ +.
T Consensus 41 ~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l-~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~---------~~ 110 (343)
T 2xzm_R 41 VLISGSRDKTVMIWKLYEEEQNGYFGIPHKAL-TGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTG---------TT 110 (343)
T ss_dssp EEEEEETTSCEEEEEECSSCCSSBSEEEEEEE-CCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSS---------CE
T ss_pred EEEEEcCCCEEEEEECCcCCcccccccccchh-ccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCC---------cE
Confidence 899999999999999875432 2223 389999999999999999999999999999999876 55
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC---CCCCCCCeeEEEEeCCC----------CeE
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP---CVDPNTPVSHVTMSETN----------GEI 434 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~---~~h~~~~V~~l~~sp~~----------~~i 434 (556)
+..+.+|...|.+++|+|+++.|++|+.||+|++||+.. ....... . | ...|.+++|+|++ ..+
T Consensus 111 ~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~-~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~l 187 (343)
T 2xzm_R 111 YKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG-ECKFSSAEKEN-H-SDWVSCVRYSPIMKSANKVQPFAPYF 187 (343)
T ss_dssp EEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS-CEEEECCTTTS-C-SSCEEEEEECCCCCSCSCCCSSCCEE
T ss_pred EEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC-CceeeeecccC-C-CceeeeeeeccccccccccCCCCCEE
Confidence 678899999999999999999999999999999999984 3343333 4 6 7889999999987 689
Q ss_pred EEEeecCcCCCCeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCC
Q psy10778 435 ASVLQTTKTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVA 512 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~ 512 (556)
++++ .|+.|++||.+++....+ .|...|.+++|+ |+| ++|++|+.||.|++||+. .......+. +.
T Consensus 188 ~s~~-----~d~~i~iwd~~~~~~~~~~~h~~~v~~~~~s--~~g---~~l~sgs~dg~v~iwd~~~~~~~~~~~~--~~ 255 (343)
T 2xzm_R 188 ASVG-----WDGRLKVWNTNFQIRYTFKAHESNVNHLSIS--PNG---KYIATGGKDKKLLIWDILNLTYPQREFD--AG 255 (343)
T ss_dssp EEEE-----TTSEEEEEETTTEEEEEEECCSSCEEEEEEC--TTS---SEEEEEETTCEEEEEESSCCSSCSEEEE--CS
T ss_pred EEEc-----CCCEEEEEcCCCceeEEEcCccccceEEEEC--CCC---CEEEEEcCCCeEEEEECCCCcccceeec--CC
Confidence 9998 899999999877776666 478899999999 899 899999999999999994 344445554 45
Q ss_pred CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 513 LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
..|.+++|+|++.+++++ .|+.|++|++.+++..+
T Consensus 256 ~~v~~v~~sp~~~~la~~-~d~~v~iw~~~~~~~~~ 290 (343)
T 2xzm_R 256 STINQIAFNPKLQWVAVG-TDQGVKIFNLMTQSKAP 290 (343)
T ss_dssp SCEEEEEECSSSCEEEEE-ESSCEEEEESSSCCSCS
T ss_pred CcEEEEEECCCCCEEEEE-CCCCEEEEEeCCCCCCc
Confidence 679999999999887655 58889999998866544
|
| >3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
Probab=99.97 E-value=9.8e-31 Score=271.17 Aligned_cols=241 Identities=19% Similarity=0.256 Sum_probs=206.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|++|+.||+|++||..+++....+. .|...|.+++|+|+|++|++|+.|+.+++|++....... ........+.+|
T Consensus 80 ~l~s~s~D~~v~iWd~~~~~~~~~~~-~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~~~~~~~--~~~~~~~~~~gh 156 (380)
T 3iz6_a 80 WIVSASQDGRLIVWNALTSQKTHAIK-LHCPWVMECAFAPNGQSVACGGLDSACSIFNLSSQADRD--GNMPVSRVLTGH 156 (380)
T ss_dssp CEEEEETTSEEEEEETTTTEEEEEEE-CCCTTCCCCEECTTSSEEEECCSSSCCEEEECCCCSSCC--CSSTTCCBCCCC
T ss_pred EEEEEeCCCeEEEEECCCCccceEEe-cCCCCEEEEEECCCCCEEEEeeCCCcEEEEECCCCcccc--CCccceeeccCC
Confidence 89999999999999999887777766 799999999999999999999999999999997542111 112345678899
Q ss_pred CccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEe-----CCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCe
Q psy10778 375 SACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREI-----PCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 375 ~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l-----~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~ 447 (556)
.+.|.++.|+|++ ..|++|+.|++|++||+.+++.+..+ .+ | ...|.++++++ ++..+++++ .|+.
T Consensus 157 ~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~l~sgs-----~D~~ 229 (380)
T 3iz6_a 157 KGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSG-H-TADVLSLSINSLNANMFISGS-----CDTT 229 (380)
T ss_dssp SSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSS-C-CSCEEEEEECSSSCCEEEEEE-----TTSC
T ss_pred CcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCC-C-ccCeEEEEeecCCCCEEEEEE-----CCCe
Confidence 9999999999974 57999999999999999999988877 55 7 78999999987 788999999 8999
Q ss_pred EEEEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC------CCCCeEEE
Q psy10778 448 LRLHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN------VALPVIAV 518 (556)
Q Consensus 448 I~iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~------h~~~V~~l 518 (556)
|++||++ ++.+..+ .|...|.+++|+ |++ ++|++|+.||+|++||+++++.+..+... +...|+++
T Consensus 230 v~~wd~~~~~~~~~~~~~h~~~v~~v~~~--p~~---~~l~s~s~D~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~ 304 (380)
T 3iz6_a 230 VRLWDLRITSRAVRTYHGHEGDINSVKFF--PDG---QRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSV 304 (380)
T ss_dssp EEEEETTTTCCCCEEECCCSSCCCEEEEC--TTS---SEEEEECSSSCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEE
T ss_pred EEEEECCCCCcceEEECCcCCCeEEEEEe--cCC---CeEEEEcCCCeEEEEECCCCcEEEEecccccccccccCceEEE
Confidence 9999996 4555555 478899999999 899 89999999999999999999998887631 12348999
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 519 TYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 519 ~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
+|+|+|++|++|+.||.|++||+.+++....+
T Consensus 305 ~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~ 336 (380)
T 3iz6_a 305 AFSISGRLLFAGYSNGDCYVWDTLLAEMVLNL 336 (380)
T ss_dssp EECSSSSEEEEECTTSCEEEEETTTCCEEEEE
T ss_pred EECCCCCEEEEEECCCCEEEEECCCCceEEEE
Confidence 99999999999999999999999876655443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.97 E-value=1.4e-29 Score=256.06 Aligned_cols=238 Identities=18% Similarity=0.206 Sum_probs=197.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCc-----ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc-------
Q psy10778 295 MICWNECDNLIRLKMSKELPAT-----PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI------- 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~-----~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~------- 362 (556)
+|++|+.||+|++|++.+.+.. ..+ .+|...|++++|+|++++|++|+.|+.|++|+..........
T Consensus 53 ~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l-~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~~ 131 (340)
T 4aow_A 53 MILSASRDKTIIMWKLTRDETNYGIPQRAL-RGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDV 131 (340)
T ss_dssp EEEEEETTSCEEEEEECCSSSCSEEEEEEE-CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCE
T ss_pred EEEEEcCCCeEEEEECCCCCcccceeeEEE-eCCCCCEEEEEECCCCCEEEEEcccccceEEeecccceeeeecCCCCce
Confidence 8999999999999998765432 223 379999999999999999999999999999987543210000
Q ss_pred ---------------------c--c----cCCCeEeeCCCccEEEEEEccCC--CEEEEEcCCCcEEEEeCCCCeEEEEe
Q psy10778 363 ---------------------E--F----CKPPTILLGHSACVTDLYLCAGF--SVAVSSSEDGTCLLWDINTIGYIREI 413 (556)
Q Consensus 363 ---------------------~--~----~~~~~~l~~h~~~V~~l~~s~~~--~~l~sgs~Dg~I~iwdl~~~~~v~~l 413 (556)
. . ........+|...+.+++|++++ .++++++.|+.|++||+.+++.+..+
T Consensus 132 ~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~ 211 (340)
T 4aow_A 132 LSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNH 211 (340)
T ss_dssp EEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred eEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEe
Confidence 0 0 01112345788999999998865 47899999999999999999999999
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCe
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGT 492 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~ 492 (556)
.. | ...|++++|+|++.+|++++ .|+.|++||++ ++.+..+.+...+.+++|+ |++ .+++++.|+.
T Consensus 212 ~~-h-~~~v~~~~~s~~~~~l~s~s-----~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~~--~~~----~~~~~~~d~~ 278 (340)
T 4aow_A 212 IG-H-TGYLNTVTVSPDGSLCASGG-----KDGQAMLWDLNEGKHLYTLDGGDIINALCFS--PNR----YWLCAATGPS 278 (340)
T ss_dssp CC-C-SSCEEEEEECTTSSEEEEEE-----TTCEEEEEETTTTEEEEEEECSSCEEEEEEC--SSS----SEEEEEETTE
T ss_pred cC-C-CCcEEEEEECCCCCEEEEEe-----CCCeEEEEEeccCceeeeecCCceEEeeecC--CCC----ceeeccCCCE
Confidence 99 9 89999999999999999999 89999999998 7788888888999999999 776 4666777999
Q ss_pred EEEEeCCCCeEEEEecC--------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 493 IQLWSGYKLAHLLTLNT--------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 493 I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|++||+..+..+..+.. +|...|++++|+|+|++|++|+.||.|+|||++++.+
T Consensus 279 i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~Dg~v~iW~~~tGtr 340 (340)
T 4aow_A 279 IKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVTIGTR 340 (340)
T ss_dssp EEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETTSCEEEEEEEC---
T ss_pred EEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCCCEEEEEeCCCcCC
Confidence 99999998887766542 5788999999999999999999999999999998753
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.7e-29 Score=275.13 Aligned_cols=220 Identities=22% Similarity=0.325 Sum_probs=200.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++|+.||.|++|+.. ++....+. +|...|++++|+|++++|++|+.|+.|++|+... +.+..+.+
T Consensus 357 ~~l~~~~~dg~v~~~~~~-~~~~~~~~-~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~~----------~~~~~~~~ 424 (577)
T 2ymu_A 357 QTIASASDDKTVKLWNRN-GQLLQTLT-GHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTG 424 (577)
T ss_dssp SEEEEEETTSEEEEEETT-CCEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTC----------CEEEEEEC
T ss_pred CEEEEEeCCCEEEEEcCC-CCEEEEec-CCCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCC----------CEEEEecC
Confidence 388999999999999964 45555554 7999999999999999999999999999999532 34578899
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|...|++++|+|+++++++++.|++|++||+. ++.+..+.. | ...|.+++|+|++++|++++ .|+.|++||.
T Consensus 425 ~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~-~~~~~~~~~-~-~~~v~~~~~spd~~~las~~-----~d~~i~iw~~ 496 (577)
T 2ymu_A 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRN-GQLLQTLTG-H-SSSVRGVAFSPDGQTIASAS-----DDKTVKLWNR 496 (577)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSEEEEEETT-SCEEEEEEC-C-SSCEEEEEECTTSCEEEEEE-----TTSEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEcCCCEEEEEECC-CCEEEEEcC-C-CCCEEEEEEcCCCCEEEEEe-----CCCEEEEEcC
Confidence 99999999999999999999999999999974 678888888 8 89999999999999999999 8999999999
Q ss_pred CCcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 454 NAQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 454 ~g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+++++..+. |...|++++|+ |+| ++|++++.||.|++||. +++.+..+. +|...|++++|+|||++|++++.
T Consensus 497 ~~~~~~~~~~h~~~v~~l~~s--~dg---~~l~s~~~dg~v~lwd~-~~~~~~~~~-~h~~~v~~~~fs~dg~~l~s~~~ 569 (577)
T 2ymu_A 497 NGQLLQTLTGHSSSVRGVAFS--PDG---QTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVWGVAFSPDGQTIASASS 569 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEEC--TTS---SCEEEEETTSEEEEECT-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCEEEEEeCCCCCEEEEEEc--CCC---CEEEEEECcCEEEEEeC-CCCEEEEEc-CCCCCEEEEEEcCCCCEEEEEeC
Confidence 998888875 67899999999 899 89999999999999995 788899998 89999999999999999999999
Q ss_pred CCcEEEEE
Q psy10778 533 EGLVIIWE 540 (556)
Q Consensus 533 Dg~V~vwd 540 (556)
||.|++||
T Consensus 570 D~~i~~Wd 577 (577)
T 2ymu_A 570 DKTVKLWN 577 (577)
T ss_dssp TSCEEEEC
T ss_pred CCEEEEeC
Confidence 99999997
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.5e-29 Score=251.42 Aligned_cols=231 Identities=12% Similarity=0.190 Sum_probs=204.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc----CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR----PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~----~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++++|+ ||.|++|+..++.....+. ..|...|++++|+|++++|++|+.||.|++|++..+. ......
T Consensus 65 ~l~~~~-dg~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~-------~~~~~~ 136 (337)
T 1gxr_A 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT-------PRIKAE 136 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------EEEEE
T ss_pred EEEEcC-CCeEEEEECCCCCceeeeecccccCCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCC-------cceeee
Confidence 777887 9999999998764332221 2688999999999999999999999999999998651 013467
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
+.+|...|.+++|+|+++.+++++.||.|++||+++++.+..+.. | ...|.+++|+|++..+++++ .++.|++
T Consensus 137 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-----~dg~i~~ 209 (337)
T 1gxr_A 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-H-TDGASCIDISNDGTKLWTGG-----LDNTVRS 209 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSEEEE
T ss_pred cccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeec-c-cCceEEEEECCCCCEEEEEe-----cCCcEEE
Confidence 788999999999999999999999999999999999999999998 8 89999999999999999999 8999999
Q ss_pred EEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 451 HTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 451 wdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
||++ ++.+....+...+.+++|+ |++ +++++++.+|.|++||+.+++.. .+. .|...|++++|+|++++|++
T Consensus 210 ~d~~~~~~~~~~~~~~~v~~~~~s--~~~---~~l~~~~~~~~i~~~~~~~~~~~-~~~-~~~~~v~~~~~~~~~~~l~~ 282 (337)
T 1gxr_A 210 WDLREGRQLQQHDFTSQIFSLGYC--PTG---EWLAVGMESSNVEVLHVNKPDKY-QLH-LHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTSSCEE-EEC-CCSSCEEEEEECTTSSEEEE
T ss_pred EECCCCceEeeecCCCceEEEEEC--CCC---CEEEEEcCCCcEEEEECCCCCeE-EEc-CCccceeEEEECCCCCEEEE
Confidence 9997 7788888889999999999 898 89999999999999999888765 444 68899999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCc
Q psy10778 530 SNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~ 547 (556)
++.||.|++|++.+++..
T Consensus 283 ~~~dg~i~~~~~~~~~~~ 300 (337)
T 1gxr_A 283 TGKDNLLNAWRTPYGASI 300 (337)
T ss_dssp EETTSEEEEEETTTCCEE
T ss_pred ecCCCcEEEEECCCCeEE
Confidence 999999999999987655
|
| >4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.5e-30 Score=264.96 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=190.5
Q ss_pred eEEeccC------CCeEEEEeCCCCCCcce---EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccccc
Q psy10778 295 MICWNEC------DNLIRLKMSKELPATPV---IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 295 ~l~~gs~------Dg~I~lw~~~~~~~~~~---~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
+|++|+. |+.|++|+..++..... ...+|...|++++|+|+++ +++++.||+|+|||+..+....
T Consensus 56 ~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~lWd~~~~~~~~----- 129 (357)
T 4g56_B 56 LLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVELWEILEKESLL----- 129 (357)
T ss_dssp EEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEEEC--------C-----
T ss_pred EEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEEEeeccccceeE-----
Confidence 5666665 78999999876643222 2226889999999999975 5677889999999998752111
Q ss_pred CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCC
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTG 444 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~ 444 (556)
.......+|.+.|++++|+|++++|++|+.||+|++||+++++.+..+.. | ...|.+++|++++. .+++++ .
T Consensus 130 ~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~-h-~~~v~~v~~s~~~~~~~~s~~-----~ 202 (357)
T 4g56_B 130 VNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNA-H-SSEVNCVAACPGKDTIFLSCG-----E 202 (357)
T ss_dssp CCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECC-C-SSCEEEEEECTTCSSCEEEEE-----T
T ss_pred EEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcC-C-CCCEEEEEEccCCCceeeeec-----c
Confidence 12245568999999999999999999999999999999999999999999 9 99999999999875 677887 8
Q ss_pred CCeEEEEEeC-CcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 445 GSILRLHTIN-AQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 445 d~~I~iwdi~-g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
|+.|++||++ ++.+... .+...+.+++|+ |++. .+|++|+.|+.|++||+++++.+..+. +|...|++++|
T Consensus 203 dg~v~~wd~~~~~~~~~~~~~~~~~~v~~v~~s--p~~~--~~la~g~~d~~i~~wd~~~~~~~~~~~-~~~~~v~~l~~ 277 (357)
T 4g56_B 203 DGRILLWDTRKPKPATRIDFCASDTIPTSVTWH--PEKD--DTFACGDETGNVSLVNIKNPDSAQTSA-VHSQNITGLAY 277 (357)
T ss_dssp TSCEEECCTTSSSCBCBCCCTTCCSCEEEEEEC--TTST--TEEEEEESSSCEEEEESSCGGGCEEEC-CCSSCEEEEEE
T ss_pred CCceEEEECCCCceeeeeeeccccccccchhhh--hccc--ceEEEeecccceeEEECCCCcEeEEEe-ccceeEEEEEE
Confidence 9999999997 5555444 245789999999 6642 689999999999999999999999998 89999999999
Q ss_pred ecCC-CEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 521 SCDS-QHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 521 s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+|++ ++|++|+.||.|+|||+++++.+.
T Consensus 278 sp~~~~~lasgs~D~~i~iwd~~~~~~~~ 306 (357)
T 4g56_B 278 SYHSSPFLASISEDCTVAVLDADFSEVFR 306 (357)
T ss_dssp CSSSSCCEEEEETTSCEEEECTTSCEEEE
T ss_pred cCCCCCEEEEEeCCCEEEEEECCCCcEeE
Confidence 9987 679999999999999998876543
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.4e-29 Score=264.03 Aligned_cols=235 Identities=15% Similarity=0.225 Sum_probs=190.9
Q ss_pred cCCcceEEeccCCCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 290 GAGAGMICWNECDNLIRLKMSKELPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 290 ~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
|+...+||.|. |++|+|||..+++....+.. +|...|++++|+|+|++|++|+.||+|++||+.++ +.+
T Consensus 113 wS~~n~lAvgl-d~tV~lWd~~tg~~~~~~~~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~---------~~~ 182 (420)
T 4gga_A 113 WSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQ---------KRL 182 (420)
T ss_dssp ECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEE
T ss_pred ECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCC---------cEE
Confidence 33344888875 99999999999988777654 57889999999999999999999999999999876 556
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC------
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT------ 441 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~------ 441 (556)
..+.+|...+.+++++ +..+++|+.|+.+++||.... ..+..+.. | ...+..+.++|++..+++++.++
T Consensus 183 ~~~~~h~~~v~~~s~~--~~~l~sgs~d~~i~~~d~~~~~~~~~~~~~-h-~~~~~~~~~~~~g~~l~s~~~D~~v~i~~ 258 (420)
T 4gga_A 183 RNMTSHSARVGSLSWN--SYILSSGSRSGHIHHHDVRVAEHHVATLSG-H-SQEVCGLRWAPDGRHLASGGNDNLVNVWP 258 (420)
T ss_dssp EEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEEC-C-SSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred EEEeCCCCceEEEeeC--CCEEEEEeCCCceeEeeecccceeeEEecc-c-ccceeeeeecCCCCeeeeeeccccceEEe
Confidence 8889999999998875 679999999999999998753 33444444 4 44555555555555444444222
Q ss_pred --------------------------------------cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcce
Q psy10778 442 --------------------------------------KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQN 482 (556)
Q Consensus 442 --------------------------------------~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~ 482 (556)
++.|++|++||++ ++.+..+.....+.++.|+ +++ +
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~I~iwd~~t~~~~~~~~~~~~v~~~~~~--~~~---~ 333 (420)
T 4gga_A 259 SAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHY---K 333 (420)
T ss_dssp SSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCEEEEEETTTTEEEEEEECSSCEEEEEEE--TTT---T
T ss_pred eccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCEEEEEeCCccccceeeccccceeeeeec--CCC---C
Confidence 1267888899887 7777777788889999999 777 5
Q ss_pred EEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 483 VIVTGH--SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 483 ~l~tg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.+++++ .||.|++||+.+++++..+. +|...|++++|+|||++|++|+.||+|++||+.+.
T Consensus 334 ~lv~~sg~~d~~I~iwd~~~~~~v~~l~-gH~~~V~~l~~spdg~~l~S~s~D~tvriWdv~~~ 396 (420)
T 4gga_A 334 ELISGHGFAQNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396 (420)
T ss_dssp EEEEEECTTTCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCS
T ss_pred eEEEEEecCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 666654 78999999999999999998 89999999999999999999999999999999764
|
| >1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-28 Score=248.03 Aligned_cols=223 Identities=13% Similarity=0.141 Sum_probs=199.4
Q ss_pred ceEEeccCCCeEEEEeCCCCCC--cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 294 GMICWNECDNLIRLKMSKELPA--TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~--~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.++++|+.||.|++|+..+++. ...+. .|...|++++|+|+++++++|+.||.|++||+..+ +.+..+
T Consensus 110 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~---------~~~~~~ 179 (337)
T 1gxr_A 110 CTLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---------TLVRQF 179 (337)
T ss_dssp SEEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEE
T ss_pred CEEEEEcCCCcEEEEECCCCCcceeeecc-cCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCC---------ceeeee
Confidence 3788999999999999988763 23333 68899999999999999999999999999998765 455778
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.+|...|.+++|+|+++.+++++.||.|++||+++++.+..+.. ...+.+++|+|++..+++++ .++.|++|
T Consensus 180 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~---~~~v~~~~~s~~~~~l~~~~-----~~~~i~~~ 251 (337)
T 1gxr_A 180 QGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-----ESSNVEVL 251 (337)
T ss_dssp CCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-----TTSCEEEE
T ss_pred ecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecC---CCceEEEEECCCCCEEEEEc-----CCCcEEEE
Confidence 89999999999999999999999999999999999998888875 78899999999999999998 89999999
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
|++ ++......+...+.+++|+ |++ ++|++++.||.|++||+.+++.+.... |...|++++|+|++++|+++
T Consensus 252 ~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~~~dg~i~~~~~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~~ 324 (337)
T 1gxr_A 252 HVNKPDKYQLHLHESCVLSLKFA--YCG---KWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTG 324 (337)
T ss_dssp ETTSSCEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEE
T ss_pred ECCCCCeEEEcCCccceeEEEEC--CCC---CEEEEecCCCcEEEEECCCCeEEEEec--CCCcEEEEEECCCCCEEEEe
Confidence 998 5555555678899999999 898 899999999999999999999886664 78999999999999999999
Q ss_pred cCCCcEEEEEc
Q psy10778 531 NTEGLVIIWES 541 (556)
Q Consensus 531 s~Dg~V~vwdl 541 (556)
+.||.|++|++
T Consensus 325 ~~dg~i~iw~~ 335 (337)
T 1gxr_A 325 SGDKKATVYEV 335 (337)
T ss_dssp ETTSCEEEEEE
T ss_pred cCCCeEEEEEE
Confidence 99999999997
|
| >2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=259.70 Aligned_cols=228 Identities=13% Similarity=0.149 Sum_probs=191.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.|++|++||+.+++....+. +|...|.+++|+|++++|++|+.|++|++||+.... . .......+|
T Consensus 90 ~l~s~s~D~~v~lwd~~~~~~~~~~~-~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~----~---~~~~~~~~~ 161 (343)
T 2xzm_R 90 FAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGEC----K---FSSAEKENH 161 (343)
T ss_dssp EEEEEETTSEEEEEETTSSCEEEEEE-CCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCE----E---EECCTTTSC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEc-CCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCc----e---eeeecccCC
Confidence 88999999999999999888777665 899999999999999999999999999999986320 0 001112378
Q ss_pred CccEEEEEEccCC----------CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 375 SACVTDLYLCAGF----------SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 375 ~~~V~~l~~s~~~----------~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
...|.+++|+|++ .++++++.||+|++||. +.+....+.. | ...|.+++|+|++.+|++++ .
T Consensus 162 ~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~-~~~~~~~~~~-h-~~~v~~~~~s~~g~~l~sgs-----~ 233 (343)
T 2xzm_R 162 SDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKA-H-ESNVNHLSISPNGKYIATGG-----K 233 (343)
T ss_dssp SSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEET-TTEEEEEEEC-C-SSCEEEEEECTTSSEEEEEE-----T
T ss_pred CceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcC-CCceeEEEcC-c-cccceEEEECCCCCEEEEEc-----C
Confidence 9999999999987 78999999999999994 4677778888 8 89999999999999999999 8
Q ss_pred CCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE--Eec----------CC
Q psy10778 445 GSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL--TLN----------TN 510 (556)
Q Consensus 445 d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~--~~~----------~~ 510 (556)
|+.|++||+. +.....+.+...|.+++|+ |++ .++++| .|+.|++||+.+++... .+. .+
T Consensus 234 dg~v~iwd~~~~~~~~~~~~~~~~v~~v~~s--p~~---~~la~~-~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~ 307 (343)
T 2xzm_R 234 DKKLLIWDILNLTYPQREFDAGSTINQIAFN--PKL---QWVAVG-TDQGVKIFNLMTQSKAPVCTIEAEPITKAEGQKG 307 (343)
T ss_dssp TCEEEEEESSCCSSCSEEEECSSCEEEEEEC--SSS---CEEEEE-ESSCEEEEESSSCCSCSEEECCCCSGGGBTTBCC
T ss_pred CCeEEEEECCCCcccceeecCCCcEEEEEEC--CCC---CEEEEE-CCCCEEEEEeCCCCCCceEEeecCcchhhhhhcC
Confidence 9999999994 4455555567789999999 888 677655 57889999998765433 332 14
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
|...|++++|+|+|++|++|+.||.|++|+++++
T Consensus 308 ~~~~v~~~~~sp~g~~l~sg~~Dg~v~~w~~~~g 341 (343)
T 2xzm_R 308 KNPQCTSLAWNALGKKLFAGFTDGVIRTFSFETS 341 (343)
T ss_dssp SCCCEEEEEECSSSCCEEEEETTSEEEEEEEEEE
T ss_pred CCCceEEEEECCCCCeEEEecCCceEEEEEEEcc
Confidence 7788999999999999999999999999998764
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.1e-29 Score=265.35 Aligned_cols=229 Identities=16% Similarity=0.153 Sum_probs=196.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++|+.||.|++|+..+++....+. +|.+.|++++|+|++++|++|+.||+|++||+..+ +.+..+.+
T Consensus 110 ~~l~~~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~---------~~~~~~~~ 179 (420)
T 3vl1_A 110 RRFILGTTEGDIKVLDSNFNLQREIDQ-AHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDG---------SNPRTLIG 179 (420)
T ss_dssp CEEEEEETTSCEEEECTTSCEEEEETT-SSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CCCEEEEC
T ss_pred CEEEEEECCCCEEEEeCCCcceeeecc-cccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCC---------cCceEEcC
Confidence 389999999999999998776554443 79999999999999999999999999999999876 56788999
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC--CCCeeE---------------------EEEeCC
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP--NTPVSH---------------------VTMSET 430 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~--~~~V~~---------------------l~~sp~ 430 (556)
|...|++++|+|+++.|++++.||+|++||+++++.+..+.. +. ...+.+ ++|+|+
T Consensus 180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~ 258 (420)
T 3vl1_A 180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNR-KENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTY 258 (420)
T ss_dssp CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECB-TTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCT
T ss_pred CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeec-CCCCCCCccEEEEecCCcceeeecccCcccceEEcCC
Confidence 999999999999999999999999999999999999988864 20 334444 445788
Q ss_pred CCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee--cCCCeEEEEEeeCCCCCcce-EEEEEeCCCeEEEEeCCCCeE-EE
Q psy10778 431 NGEIASVLQTTKTGGSILRLHTIN-AQLITSLA--SELRITSVTFSNAPEGVSQN-VIVTGHSDGTIQLWSGYKLAH-LL 505 (556)
Q Consensus 431 ~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~--~~~~i~~i~~s~~pdg~~~~-~l~tg~~dg~I~iwd~~~~~~-~~ 505 (556)
+..+++++ .++.|++||++ ++.+..+. +...+.+++|+ |++ . +|++|+.||.|++||+.+++. +.
T Consensus 259 ~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~~l~~g~~dg~i~vwd~~~~~~~~~ 328 (420)
T 3vl1_A 259 GKYVIAGH-----VSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVD--GNN---ANYIYAGYENGMLAQWDLRSPECPVG 328 (420)
T ss_dssp TEEEEEEE-----TTSCEEEEETTTCCEEEEECCTTSSCEEEEEEC--SSC---TTEEEEEETTSEEEEEETTCTTSCSE
T ss_pred CCEEEEEc-----CCCeEEEEECCCCceeEEcccccCCCceeEEEe--CCC---CCEEEEEeCCCeEEEEEcCCCcCchh
Confidence 89999999 89999999997 66666553 56899999999 888 6 999999999999999998753 66
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 506 TLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 506 ~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.+...|...|+++.+ +++++|++++.||.|++|++.+.
T Consensus 329 ~~~~~~~~~v~~~~~-~~~~~l~s~~~d~~v~iw~~~~~ 366 (420)
T 3vl1_A 329 EFLINEGTPINNVYF-AAGALFVSSGFDTSIKLDIISDP 366 (420)
T ss_dssp EEEESTTSCEEEEEE-ETTEEEEEETTTEEEEEEEECCT
T ss_pred hhhccCCCCceEEEe-CCCCEEEEecCCccEEEEeccCC
Confidence 666346788888855 57889999999999999999874
|
| >4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ... | Back alignment and structure |
|---|
Probab=99.97 E-value=4.3e-29 Score=250.77 Aligned_cols=228 Identities=18% Similarity=0.245 Sum_probs=199.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++|+.||.|++|+..+++....+. +|...|.+++|+|++++|++|+.||+|++||+..+ +.+..+..
T Consensus 78 ~~l~s~~~d~~i~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~---------~~~~~~~~ 147 (312)
T 4ery_A 78 NLLVSASDDKTLKIWDVSSGKCLKTLK-GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTG---------KCLKTLPA 147 (312)
T ss_dssp SEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTC---------CEEEEECC
T ss_pred CEEEEECCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCC---------EEEEEecC
Confidence 389999999999999999988777776 79999999999999999999999999999999865 45678889
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|..+|.+++|+|+++++++|+.||.|++||+++++.+..+...+ ...+..++|+|++.++++++ .++.|++||+
T Consensus 148 ~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~-----~d~~i~iwd~ 221 (312)
T 4ery_A 148 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDD-NPPVSFVKFSPNGKYILAAT-----LDNTLKLWDY 221 (312)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSS-CCCEEEEEECTTSSEEEEEE-----TTTEEEEEET
T ss_pred CCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccC-CCceEEEEECCCCCEEEEEc-----CCCeEEEEEC
Confidence 99999999999999999999999999999999998888775424 67899999999999999999 8999999999
Q ss_pred C-CcEEEEee-cCCC--eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 454 N-AQLITSLA-SELR--ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 454 ~-g~~i~~~~-~~~~--i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
+ ++.+..+. +... .....++. +++ .+|++|+.||.|++||+.+++.+..+. +|...|.+++|+|++..+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~p~~~~l~s 296 (312)
T 4ery_A 222 SKGKCLKTYTGHKNEKYCIFANFSV-TGG---KWIVSGSEDNLVYIWNLQTKEIVQKLQ-GHTDVVISTACHPTENIIAS 296 (312)
T ss_dssp TTTEEEEEECSSCCSSSCCCEEEEC-SSS---CEEEECCTTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECSSSSEEEE
T ss_pred CCCcEEEEEEecCCceEEEEEEEEe-CCC---cEEEEECCCCEEEEEECCCchhhhhhh-ccCCcEEEEeecCcCCceEE
Confidence 7 77777664 3322 22334442 456 799999999999999999999999998 89999999999999999999
Q ss_pred Ec--CCCcEEEEEcC
Q psy10778 530 SN--TEGLVIIWESS 542 (556)
Q Consensus 530 gs--~Dg~V~vwdl~ 542 (556)
++ .||.|++|+..
T Consensus 297 ~~~~~d~~i~~W~~d 311 (312)
T 4ery_A 297 AALENDKTIKLWKSD 311 (312)
T ss_dssp EECTTTCCEEEEECC
T ss_pred EEccCCccEEEecCC
Confidence 86 69999999864
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=4.6e-29 Score=249.75 Aligned_cols=244 Identities=14% Similarity=0.197 Sum_probs=198.4
Q ss_pred cCCcceEEeccCCCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc------
Q psy10778 290 GAGAGMICWNECDNLIRLKMSKELPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI------ 362 (556)
Q Consensus 290 ~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~------ 362 (556)
|+..++||.|. |++|+|||.++++....+.. +|...|++++|+|++++|++|+.||+|++|++.++......
T Consensus 33 WS~~~~lAvg~-D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~ 111 (318)
T 4ggc_A 33 WSSGNVLAVAL-DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSAR 111 (318)
T ss_dssp ECTTSEEEEEE-TTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSC
T ss_pred ECCCCEEEEEe-CCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccce
Confidence 33334788764 99999999999988877653 57889999999999999999999999999998654210000
Q ss_pred --------------------------cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE----EEE
Q psy10778 363 --------------------------EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY----IRE 412 (556)
Q Consensus 363 --------------------------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~----v~~ 412 (556)
.....+..+.+|...+.++.++++++++++++.||+|++||+++++. ...
T Consensus 112 ~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~ 191 (318)
T 4ggc_A 112 VGSLSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 191 (318)
T ss_dssp EEEEEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEE
T ss_pred EEEeecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceee
Confidence 00123456788999999999999999999999999999999987642 344
Q ss_pred eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEE--eC
Q psy10778 413 IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTG--HS 489 (556)
Q Consensus 413 l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg--~~ 489 (556)
... + .+.|.++++++++..++..... +.++.|++||.+ +.......+...+..++|+ +++ +.++++ +.
T Consensus 192 ~~~-~-~~~v~~~~~~~~~~~~~~~~~~--~~~~~i~lwd~~~~~~~~~~~~~~~v~~~~~~--~~~---~~~~~~sg~~ 262 (318)
T 4ggc_A 192 FTQ-H-QGAVKAVAWCPWQSNVLATGGG--TSDRHIRIWNVCSGACLSAVDAHSQVCSILWS--PHY---KELISGHGFA 262 (318)
T ss_dssp ECC-C-CSCEEEEEECTTSTTEEEEEEC--TTTCEEEEEETTTCCEEEEEECSSCEEEEEEE--TTT---TEEEEEECTT
T ss_pred ecc-c-CCceEEEEecCCCCcEEEEEec--CCCCEEEEEecccccccccccceeeeeeeeec--ccc---cceEEEEEcC
Confidence 555 6 7889999999987766533211 178999999998 6666777788899999999 776 555554 47
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 490 DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 490 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
||.|++||+.+++++.++. +|...|++++|+|+|++|++|+.||+|+|||+.+.
T Consensus 263 d~~i~iwd~~~~~~~~~l~-gH~~~V~~l~~spdg~~l~S~s~D~~v~iWd~~~~ 316 (318)
T 4ggc_A 263 QNQLVIWKYPTMAKVAELK-GHTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316 (318)
T ss_dssp TCCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTTEEEEECCSCC
T ss_pred CCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEecCCeEEEEECCCC
Confidence 9999999999999999998 89999999999999999999999999999999764
|
| >1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.6e-29 Score=277.00 Aligned_cols=233 Identities=16% Similarity=0.197 Sum_probs=201.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++++ ++.|++|+..+++....+. +|.+.|++++|+|+|++||+|+.||+|+|||+..+.. .....+.+|
T Consensus 32 ~l~~~~-~~~v~l~~~~~~~~~~~~~-~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~-------~~~~~~~~~ 102 (611)
T 1nr0_A 32 KIQYCN-GTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------ILKTTIPVF 102 (611)
T ss_dssp EEEEEE-TTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------CEEEEEECS
T ss_pred EEEeCC-CCEEEEecCCCcccCeEec-CCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcc-------eeeEeeccc
Confidence 677766 5799999998877777765 8999999999999999999999999999999864310 223567899
Q ss_pred CccEEEEEEccCCCEEEEEcCC----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSED----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILR 449 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~D----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~ 449 (556)
.+.|.+++|+|+++.|++++.+ +.|++|| .++....+.+ | ...|.+++|+|++. .|++++ .|++|+
T Consensus 103 ~~~v~~v~fs~dg~~l~~~~~~~~~~~~v~~wd--~~~~~~~l~g-h-~~~v~~v~f~p~~~~~l~s~s-----~D~~v~ 173 (611)
T 1nr0_A 103 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFD--TGTSNGNLTG-Q-ARAMNSVDFKPSRPFRIISGS-----DDNTVA 173 (611)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETT--TCCBCBCCCC-C-SSCEEEEEECSSSSCEEEEEE-----TTSCEE
T ss_pred CCceEEEEECCCCCEEEEEECCCCceeEEEEee--CCCCcceecC-C-CCCceEEEECCCCCeEEEEEe-----CCCeEE
Confidence 9999999999999999988865 4677787 4566777888 9 89999999999987 588888 899999
Q ss_pred EEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCCeEEEEEe
Q psy10778 450 LHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NVALPVIAVTYS 521 (556)
Q Consensus 450 iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s 521 (556)
+||.. ++.+..+ .|...|.+++|+ |+| ++|++|+.||+|++||+.+++.+..+.. +|...|.+++|+
T Consensus 174 lwd~~~~~~~~~l~~H~~~V~~v~fs--pdg---~~las~s~D~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 174 IFEGPPFKFKSTFGEHTKFVHSVRYN--PDG---SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp EEETTTBEEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC
T ss_pred EEECCCCeEeeeeccccCceEEEEEC--CCC---CEEEEEECCCcEEEEECCCCcEeeeeccccccccccCCCEEEEEEC
Confidence 99987 6666666 477899999999 899 8999999999999999999999888843 689999999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|++++|++++.||.|++||+.+++...++
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~ 277 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTI 277 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence 99999999999999999999987665444
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.4e-29 Score=251.48 Aligned_cols=248 Identities=13% Similarity=0.105 Sum_probs=200.4
Q ss_pred eEEeccCCCeEEEEeCCCCCC----cceEcCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELPA----TPVIRPPLGATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~----~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
+|++|+.||.|++|++.++.. ...+. +|...|++++|+| ++++|++|+.||+|++||+..+.........+.+
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~ 103 (351)
T 3f3f_A 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWR-AHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKL 103 (351)
T ss_dssp EEEEEETTSEEEEEEECSSSCCEEEEEEEE-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEE
T ss_pred EEEEeeCCCeEEEEECCCCCCcceecceec-cCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCccee
Confidence 889999999999999986532 22233 7999999999999 6999999999999999999875322111111335
Q ss_pred eEeeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCeEEEEeC-------------CCCCCCCeeEEEEeCC---
Q psy10778 369 TILLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIGYIREIP-------------CVDPNTPVSHVTMSET--- 430 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~~v~~l~-------------~~h~~~~V~~l~~sp~--- 430 (556)
..+.+|...|.+++|+|+ +.++++++.||.|++||+++++.+..+. . | ...+.+++|+|+
T Consensus 104 ~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~p~~~~ 181 (351)
T 3f3f_A 104 CTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPAN-H-LQSDFCLSWCPSRFS 181 (351)
T ss_dssp EEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSS-C-SCCCEEEEECCCSSS
T ss_pred eeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCC-c-ccceeEEEeccCCCC
Confidence 678899999999999999 9999999999999999998875433221 3 5 678999999997
Q ss_pred CCeEEEEeecCcCCCCeEEEEEeC-CcE--EEEe-ecCCCeEEEEEeeCCCCCc-ceEEEEEeCCCeEEEEeCCCC----
Q psy10778 431 NGEIASVLQTTKTGGSILRLHTIN-AQL--ITSL-ASELRITSVTFSNAPEGVS-QNVIVTGHSDGTIQLWSGYKL---- 501 (556)
Q Consensus 431 ~~~i~s~s~~~~~~d~~I~iwdi~-g~~--i~~~-~~~~~i~~i~~s~~pdg~~-~~~l~tg~~dg~I~iwd~~~~---- 501 (556)
+..+++++ .++.+.+|+.. ++. +..+ .|...|++++|+ |++.. .++|++|+.||.|++||+..+
T Consensus 182 ~~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~--p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~ 254 (351)
T 3f3f_A 182 PEKLAVSA-----LEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWA--PSIGRWYQLIATGCKDGRIRIFKITEKLSPL 254 (351)
T ss_dssp CCEEEEEE-----TTEEEEEEECTTSCEEEEEECCCCCSCEEEEEEC--CCSSCSSEEEEEEETTSCEEEEEEEECC---
T ss_pred CcEEEEec-----CCCcEEEEccCCCceeeeeecCCCCcceeEEEEC--CCCCCcceEEEEEcCCCeEEEEeCCCCcCcc
Confidence 88999998 88899777776 443 3444 367899999999 66410 158999999999999999764
Q ss_pred ------------------------------------------eEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q psy10778 502 ------------------------------------------AHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 502 ------------------------------------------~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
+.+..+. +|...|++++|+|++++|++|+.||.|++|
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw 333 (351)
T 3f3f_A 255 ASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQSNLQVELLSEHD-DHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333 (351)
T ss_dssp ------------------------------------CCSEEEEEEEEEC-TTSSCEEEEEECSSSCCEEEEETTSCEEEE
T ss_pred ccCCcccceeccCCCcccccccccccccccceeeeecccccccEEEEEe-cccccEEEEEEcCCCCEEEEecCCCcEEEE
Confidence 5666676 799999999999999999999999999999
Q ss_pred EcCCCCCcCeeecc
Q psy10778 540 ESSSHNRTPKFLNL 553 (556)
Q Consensus 540 dl~~~~~~~~~~~~ 553 (556)
++.+++....+..+
T Consensus 334 ~~~~~~~~~~~~~~ 347 (351)
T 3f3f_A 334 KATYSNEFKCMSVI 347 (351)
T ss_dssp EECTTSCEEEEEEE
T ss_pred ecCcCcchhheeeh
Confidence 99998777666544
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.4e-29 Score=258.19 Aligned_cols=235 Identities=15% Similarity=0.170 Sum_probs=201.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. +|...|.+++| +++.+++|+.||.|++||+.... .....+.+|
T Consensus 148 ~l~~~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~--------~~~~~~~~~ 216 (401)
T 4aez_A 148 FLSVGLGNGLVDIYDVESQTKLRTMA-GHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIAN--------HQIGTLQGH 216 (401)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSS--------CEEEEEECC
T ss_pred EEEEECCCCeEEEEECcCCeEEEEec-CCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCc--------ceeeEEcCC
Confidence 89999999999999999888777776 89999999999 45799999999999999997431 345778899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.+.|.+++|+|+++++++|+.||.|++||+++++.+..+.. | ...|.+++|+|++..+++.+. ++.++.|++||++
T Consensus 217 ~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~-~-~~~v~~~~~~p~~~~ll~~~~--gs~d~~i~i~d~~ 292 (401)
T 4aez_A 217 SSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTN-H-NAAVKAVAWCPWQSNLLATGG--GTMDKQIHFWNAA 292 (401)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECC-C-SSCCCEEEECTTSTTEEEEEC--CTTTCEEEEEETT
T ss_pred CCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecC-C-cceEEEEEECCCCCCEEEEec--CCCCCEEEEEECC
Confidence 99999999999999999999999999999999999999988 8 899999999998876665441 0158999999997
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCCCCcceEEEE--EeCCCeEEEEeCCCCeEEEE--ecCCCCCCeEEEEEecCCCEEEE
Q psy10778 455 -AQLITSLASELRITSVTFSNAPEGVSQNVIVT--GHSDGTIQLWSGYKLAHLLT--LNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t--g~~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++.+..+.+...+.+++|+ |++ +.+++ |+.||.|++||+.+++.... +. +|...|.+++|+|++++|++
T Consensus 293 ~~~~~~~~~~~~~v~~~~~s--~~~---~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~-~h~~~v~~~~~s~dg~~l~s 366 (401)
T 4aez_A 293 TGARVNTVDAGSQVTSLIWS--PHS---KEIMSTHGFPDNNLSIWSYSSSGLTKQVDIP-AHDTRVLYSALSPDGRILST 366 (401)
T ss_dssp TCCEEEEEECSSCEEEEEEC--SSS---SEEEEEECTTTCEEEEEEEETTEEEEEEEEE-CCSSCCCEEEECTTSSEEEE
T ss_pred CCCEEEEEeCCCcEEEEEEC--CCC---CeEEEEeecCCCcEEEEecCCccceeEEEec-CCCCCEEEEEECCCCCEEEE
Confidence 8888888889999999999 888 78888 44899999999988665544 44 78999999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
++.||.|++|++.+++.+...
T Consensus 367 ~~~dg~i~iw~~~~~~~~~~~ 387 (401)
T 4aez_A 367 AASDENLKFWRVYDGDHVKRP 387 (401)
T ss_dssp ECTTSEEEEEECCC-------
T ss_pred EeCCCcEEEEECCCCcccccc
Confidence 999999999999997766544
|
| >3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.8e-30 Score=265.98 Aligned_cols=231 Identities=17% Similarity=0.235 Sum_probs=200.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. .| ..+....+++++++|++|+.||.|++||+..+ +....+.+|
T Consensus 70 ~l~~~~~d~~v~i~d~~~~~~~~~~~-~~-~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~h 138 (420)
T 3vl1_A 70 HLYKARLDGHDFLFNTIIRDGSKMLK-RA-DYTAVDTAKLQMRRFILGTTEGDIKVLDSNFN---------LQREIDQAH 138 (420)
T ss_dssp TEEEEEETTEEEEEECCSEETTTTSC-SC-CEEEEEEECSSSCEEEEEETTSCEEEECTTSC---------EEEEETTSS
T ss_pred eEEEEEcCCcEEEEEecccceeeEEe-cC-CceEEEEEecCCCEEEEEECCCCEEEEeCCCc---------ceeeecccc
Confidence 78899999999999998776555443 33 44555578999999999999999999998765 344566799
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|++++|+|++++|++|+.||+|++||+.+++.+..+.. | ...|.+++|+|++..|++++ .|+.|++||++
T Consensus 139 ~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~l~s~~-----~d~~v~iwd~~ 211 (420)
T 3vl1_A 139 VSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG-H-RATVTDIAIIDRGRNVLSAS-----LDGTIRLWECG 211 (420)
T ss_dssp SSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC-C-SSCEEEEEEETTTTEEEEEE-----TTSCEEEEETT
T ss_pred cCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC-C-CCcEEEEEEcCCCCEEEEEc-----CCCcEEEeECC
Confidence 99999999999999999999999999999999999999998 9 89999999999999999999 89999999997
Q ss_pred -CcEEEEee----cCCCeEEEEEeeC-------------------CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q psy10778 455 -AQLITSLA----SELRITSVTFSNA-------------------PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN 510 (556)
Q Consensus 455 -g~~i~~~~----~~~~i~~i~~s~~-------------------pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 510 (556)
++.+..+. +...+.++++.+. |++ ++|++|+.||.|++||+++++.+..+..+
T Consensus 212 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 288 (420)
T 3vl1_A 212 TGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG---KYVIAGHVSGVITVHNVFSKEQTIQLPSK 288 (420)
T ss_dssp TTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT---EEEEEEETTSCEEEEETTTCCEEEEECCT
T ss_pred CCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC---CEEEEEcCCCeEEEEECCCCceeEEcccc
Confidence 77777764 3455666665321 677 89999999999999999999988888757
Q ss_pred CCCCeEEEEEecCCC-EEEEEcCCCcEEEEEcCCCCC
Q psy10778 511 VALPVIAVTYSCDSQ-HLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 511 h~~~V~~l~~s~dg~-~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|...|++++|+|+++ +|++|+.||.|++||+++++.
T Consensus 289 ~~~~v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~~ 325 (420)
T 3vl1_A 289 FTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPEC 325 (420)
T ss_dssp TSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCTTS
T ss_pred cCCCceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCcC
Confidence 889999999999998 999999999999999998654
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-28 Score=246.66 Aligned_cols=238 Identities=13% Similarity=0.152 Sum_probs=212.6
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC-----CcEEEEEeeeccCcccc--cccC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS-----GNILVYEYELNASTNKI--EFCK 366 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~--~~~~ 366 (556)
.++++++.||.|++|++.+++....+. |...|.+++|+|+++++++++.+ |.|++|++......... ....
T Consensus 87 ~~l~s~~~dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~ 164 (369)
T 3zwl_B 87 KYCVTGSADYSIKLWDVSNGQCVATWK--SPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEE 164 (369)
T ss_dssp SEEEEEETTTEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSS
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEee--cCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccc
Confidence 388999999999999999988777775 88899999999999999999999 99999999876322111 1113
Q ss_pred CCeEeeCCCc--cEEEEEEccCCCEEEEEcCCCcEEEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 367 PPTILLGHSA--CVTDLYLCAGFSVAVSSSEDGTCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 367 ~~~~l~~h~~--~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
....+..|.. .+.+++|+|+++.+++++.||.|++||+++ ++.+..+.. | ...|.+++|+|++..|++++
T Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~----- 237 (369)
T 3zwl_B 165 PIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDL-H-EKSISDMQFSPDLTYFITSS----- 237 (369)
T ss_dssp CSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEEC-C-SSCEEEEEECTTSSEEEEEE-----
T ss_pred eeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEec-C-CCceeEEEECCCCCEEEEec-----
Confidence 5567777877 999999999999999999999999999998 788888988 8 89999999999999999999
Q ss_pred CCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC--------------eEEEEeCCCCeEEEEec
Q psy10778 444 GGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG--------------TIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg--------------~I~iwd~~~~~~~~~~~ 508 (556)
.++.|++||++ ++.+..+.+...+.+++|+ |++ +++++++.++ .+++||..+++.+..+.
T Consensus 238 ~d~~i~v~d~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 238 RDTNSFLVDVSTLQVLKKYETDCPLNTAVIT--PLK---EFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp TTSEEEEEETTTCCEEEEEECSSCEEEEEEC--SSS---SEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred CCceEEEEECCCCceeeeecCCCCceeEEec--CCC---ceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 89999999997 7888888899999999999 888 8999999888 89999999999999998
Q ss_pred CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 509 TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 509 ~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+|...|++++|+|++++|++++.||.|++|+++++..
T Consensus 313 -~~~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~ 349 (369)
T 3zwl_B 313 -GHFGPLNTVAISPQGTSYASGGEDGFIRLHHFEKSYF 349 (369)
T ss_dssp -CCSSCEEEEEECTTSSEEEEEETTSEEEEEEECHHHH
T ss_pred -cccCcEEEEEECCCCCEEEEEcCCCeEEEEECccccc
Confidence 8999999999999999999999999999999987443
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.97 E-value=3e-29 Score=259.65 Aligned_cols=238 Identities=17% Similarity=0.197 Sum_probs=205.4
Q ss_pred eEEeccCCCeEEEEeCCCCC------CcceEcCCCCCceEEEEEcCC----C---CEEEEEeCCCcEEEEEeeeccCccc
Q psy10778 295 MICWNECDNLIRLKMSKELP------ATPVIRPPLGATIATATTAPD----C---HTLWLGLTSGNILVYEYELNASTNK 361 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~------~~~~~~~~h~~~V~~i~~s~d----g---~~l~tgs~Dg~I~vwd~~~~~~~~~ 361 (556)
++++|+.||.|++|+..+++ ....+. +|...|++++|+|+ + ++|++|+.||.|++|++..+.....
T Consensus 28 ~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~g~~~~~l~s~~~dg~i~iw~~~~~~~~~~ 106 (397)
T 1sq9_A 28 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHF-VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKK 106 (397)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEE-CCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCC
T ss_pred eEEEEcCCCEEEEEECCCcccccCCCcceEEe-cCCCcEEEEEEecccccCCccccEEEEEcCCCCEEEEEccCCccccc
Confidence 89999999999999999877 444554 79999999999999 9 9999999999999999998611000
Q ss_pred ccccCCCeEeeCC-----CccEEEEEEc----cCCCE-EEEEcCCCcEEEEeCCC------CeEEE-----Ee-------
Q psy10778 362 IEFCKPPTILLGH-----SACVTDLYLC----AGFSV-AVSSSEDGTCLLWDINT------IGYIR-----EI------- 413 (556)
Q Consensus 362 ~~~~~~~~~l~~h-----~~~V~~l~~s----~~~~~-l~sgs~Dg~I~iwdl~~------~~~v~-----~l------- 413 (556)
.....+.+| ...|.+++|+ |+++. +++++.||.|++||+.+ ++.+. .+
T Consensus 107 ----~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (397)
T 1sq9_A 107 ----VIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 182 (397)
T ss_dssp ----EEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCS
T ss_pred ----ccceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccc
Confidence 015778888 5999999999 99999 99999999999999998 65554 55
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-------CCCeEEEEEeeCCCCCcceEEE
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS-------ELRITSVTFSNAPEGVSQNVIV 485 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~-------~~~i~~i~~s~~pdg~~~~~l~ 485 (556)
.. | ...|.+++|+|++ .+++++ .++.|++||++ ++.+..+.. ...+.+++|+ |++ ++|+
T Consensus 183 ~~-~-~~~i~~~~~~~~~-~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~--~~~---~~l~ 249 (397)
T 1sq9_A 183 MT-P-SQFATSVDISERG-LIATGF-----NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS--PQG---SLLA 249 (397)
T ss_dssp SS-S-CCCCCEEEECTTS-EEEEEC-----TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC--SST---TEEE
T ss_pred cC-C-CCCceEEEECCCc-eEEEEe-----CCCcEEEEECCCCceeEEEeccccccccCCccceEEEC--CCC---CEEE
Confidence 45 6 7899999999999 999988 89999999998 777777764 8899999999 888 8999
Q ss_pred EEeCC---CeEEEEeCCCCeEEEEecCC-------------CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 486 TGHSD---GTIQLWSGYKLAHLLTLNTN-------------VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 486 tg~~d---g~I~iwd~~~~~~~~~~~~~-------------h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
+++.| |.|++||+.+++.+..+. + |...|.+++|+|++++|++++.||.|++||+.+++.+..
T Consensus 250 ~~~~d~~~g~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~ 328 (397)
T 1sq9_A 250 IAHDSNSFGCITLYETEFGERIGSLS-VPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITT 328 (397)
T ss_dssp EEEEETTEEEEEEEETTTCCEEEEEC-BC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEE
T ss_pred EEecCCCCceEEEEECCCCcccceec-cCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEE
Confidence 99999 999999999999999987 5 899999999999999999999999999999999877666
Q ss_pred ee
Q psy10778 550 FL 551 (556)
Q Consensus 550 ~~ 551 (556)
+.
T Consensus 329 ~~ 330 (397)
T 1sq9_A 329 LN 330 (397)
T ss_dssp EE
T ss_pred Ee
Confidence 65
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.5e-28 Score=256.08 Aligned_cols=237 Identities=17% Similarity=0.242 Sum_probs=198.9
Q ss_pred eEEeccCCCeEEEEeCCCC-C---CcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKEL-P---ATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~-~---~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+++.|+.||.|++|++... + ....+ .+|.+.|++++|+| ++++|++|+.||+|++|++..+...... .+++.
T Consensus 49 ~~~~~~~~g~i~v~~~~~~~~~~~~~~~~-~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~--~~~~~ 125 (402)
T 2aq5_A 49 LICEASGGGAFLVLPLGKTGRVDKNVPLV-CGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPL--REPVI 125 (402)
T ss_dssp EEBCCSSSCCEEEEETTCCEECCTTCCCB-CCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCB--CSCSE
T ss_pred EEEEEcCCCEEEEEECccCCCCCCCCceE-ecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCcccc--CCceE
Confidence 5667899999999998643 2 22233 37999999999999 8999999999999999999865221111 14568
Q ss_pred EeeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEe--CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 370 ILLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREI--PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l--~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
.+.+|...|++++|+|++ .++++|+.||+|++||+.+++.+..+ .. | ...|.+++|+|++..|++++ .|+
T Consensus 126 ~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~-----~d~ 198 (402)
T 2aq5_A 126 TLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDV-H-PDTIYSVDWSRDGALICTSC-----RDK 198 (402)
T ss_dssp EEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTT-C-CSCEEEEEECTTSSCEEEEE-----TTS
T ss_pred EecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCC-C-CCceEEEEECCCCCEEEEEe-----cCC
Confidence 899999999999999998 69999999999999999999999999 77 8 89999999999999999999 899
Q ss_pred eEEEEEeC-CcEEEEe--ecCC-CeEEEEEeeCCCCCcceEEEEE---eCCCeEEEEeCCCCeE-EEEecCCCCCCeEEE
Q psy10778 447 ILRLHTIN-AQLITSL--ASEL-RITSVTFSNAPEGVSQNVIVTG---HSDGTIQLWSGYKLAH-LLTLNTNVALPVIAV 518 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~--~~~~-~i~~i~~s~~pdg~~~~~l~tg---~~dg~I~iwd~~~~~~-~~~~~~~h~~~V~~l 518 (556)
.|++||++ ++.+..+ .+.+ .+.+++|+ +++ ++|++| +.|+.|++||+.+++. +......+...+.++
T Consensus 199 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~ 273 (402)
T 2aq5_A 199 RVRVIEPRKGTVVAEKDRPHEGTRPVHAVFV--SEG---KILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLP 273 (402)
T ss_dssp EEEEEETTTTEEEEEEECSSCSSSCCEEEEC--STT---EEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEE
T ss_pred cEEEEeCCCCceeeeeccCCCCCcceEEEEc--CCC---cEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEE
Confidence 99999997 7777776 3444 38999999 888 899999 7899999999988664 333332467889999
Q ss_pred EEecCCCEEE-EEcCCCcEEEEEcCCCCC
Q psy10778 519 TYSCDSQHLY-ASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 519 ~~s~dg~~l~-sgs~Dg~V~vwdl~~~~~ 546 (556)
+|+|+++.|+ +|+.||.|++|++.+++.
T Consensus 274 ~~s~~~~~l~~~g~~dg~i~i~d~~~~~~ 302 (402)
T 2aq5_A 274 FFDPDTNIVYLCGKGDSSIRYFEITSEAP 302 (402)
T ss_dssp EEETTTTEEEEEETTCSCEEEEEECSSTT
T ss_pred EEcCCCCEEEEEEcCCCeEEEEEecCCCc
Confidence 9999999986 566899999999998763
|
| >2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.2e-28 Score=266.36 Aligned_cols=230 Identities=21% Similarity=0.299 Sum_probs=204.0
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++++.|++|++|+..... ...+. +|...|.+++++|++++|++|+.||.|++|+... +.+..+.+
T Consensus 316 ~~l~t~~~d~~i~~w~~~~~~-~~~~~-~~~~~v~~~~~s~~g~~l~~~~~dg~v~~~~~~~----------~~~~~~~~ 383 (577)
T 2ymu_A 316 QTIASASDDKTVKLWNRNGQH-LQTLT-GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG----------QLLQTLTG 383 (577)
T ss_dssp SEEEEEETTSCEEEEETTSCE-EEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTC----------CEEEEEEC
T ss_pred CEEEEEeCCCeEEEEeCCCCe-eEEEe-CCCCCEEEEEECCCCCEEEEEeCCCEEEEEcCCC----------CEEEEecC
Confidence 378899999999999987543 33333 7999999999999999999999999999999532 34577899
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
|...|++++|+|++++|++++.|+.|++||. +++.+..+.. | ...|.+++|+|++..+++++ .|+.|++||.
T Consensus 384 ~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~-~-~~~v~~~~~s~d~~~l~~~~-----~d~~v~~w~~ 455 (577)
T 2ymu_A 384 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTG-H-SSSVWGVAFSPDDQTIASAS-----DDKTVKLWNR 455 (577)
T ss_dssp CSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEEC-C-SSCEEEEEECTTSSEEEEEE-----TTSEEEEEET
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecC-C-CCCeEEEEECCCCCEEEEEc-----CCCEEEEEEC
Confidence 9999999999999999999999999999996 4688888888 8 89999999999999999999 8999999999
Q ss_pred CCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 454 NAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 454 ~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+++.+..+ .|...|.+++|+ |++ ++|++++.|+.|++||. +++.+..+. +|...|++++|+|++++|++++.
T Consensus 456 ~~~~~~~~~~~~~~v~~~~~s--pd~---~~las~~~d~~i~iw~~-~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s~~~ 528 (577)
T 2ymu_A 456 NGQLLQTLTGHSSSVRGVAFS--PDG---QTIASASDDKTVKLWNR-NGQLLQTLT-GHSSSVRGVAFSPDGQTIASASD 528 (577)
T ss_dssp TSCEEEEEECCSSCEEEEEEC--TTS---CEEEEEETTSEEEEEET-TSCEEEEEE-CCSSCEEEEEECTTSSCEEEEET
T ss_pred CCCEEEEEcCCCCCEEEEEEc--CCC---CEEEEEeCCCEEEEEcC-CCCEEEEEe-CCCCCEEEEEEcCCCCEEEEEEC
Confidence 98887776 478899999999 899 89999999999999995 788899998 89999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcCeee
Q psy10778 533 EGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~~ 551 (556)
||.|++||.. ++.+..+.
T Consensus 529 dg~v~lwd~~-~~~~~~~~ 546 (577)
T 2ymu_A 529 DKTVKLWNRN-GQLLQTLT 546 (577)
T ss_dssp TSEEEEECTT-SCEEEEEE
T ss_pred cCEEEEEeCC-CCEEEEEc
Confidence 9999999964 44444443
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=249.26 Aligned_cols=230 Identities=12% Similarity=0.144 Sum_probs=191.6
Q ss_pred ceEEeccCCCeEEEEeCCCCC-CcceEcCCCCCceEEEEE------cCCCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 294 GMICWNECDNLIRLKMSKELP-ATPVIRPPLGATIATATT------APDCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~-~~~~~~~~h~~~V~~i~~------s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
.++++|+.||.|++|++.+++ ....+. +|...|++++| ++++++|++|+.||.|++||+..+. .
T Consensus 81 ~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~--------~ 151 (357)
T 3i2n_A 81 RYLATGDFGGNLHIWNLEAPEMPVYSVK-GHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKD--------D 151 (357)
T ss_dssp CCEEEEETTSCEEEECTTSCSSCSEEEC-CCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCS--------S
T ss_pred ceEEEecCCCeEEEEeCCCCCccEEEEE-ecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCC--------C
Confidence 489999999999999999887 555554 89999999955 6789999999999999999998651 2
Q ss_pred CCeEeeCCCc----cEEEEE----EccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC---CCCeEE
Q psy10778 367 PPTILLGHSA----CVTDLY----LCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE---TNGEIA 435 (556)
Q Consensus 367 ~~~~l~~h~~----~V~~l~----~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp---~~~~i~ 435 (556)
++..+..|.+ .|.+++ |+++++++++++.||.|++||+++++...... | ...|.+++|+| ++..++
T Consensus 152 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~-~~~v~~~~~~~~~~~~~~l~ 228 (357)
T 3i2n_A 152 PVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN--I-KNGVCSLEFDRKDISMNKLV 228 (357)
T ss_dssp CSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE--C-SSCEEEEEESCSSSSCCEEE
T ss_pred cceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC--C-CCceEEEEcCCCCCCCCEEE
Confidence 4566666554 899998 67899999999999999999999988766554 5 78999999999 899999
Q ss_pred EEeecCcCCCCeEEEEEeC-CcEEE-----E-eecCCCeEEEEEeeCCCCCcce-EEEEEeCCCeEEEEeCCCC------
Q psy10778 436 SVLQTTKTGGSILRLHTIN-AQLIT-----S-LASELRITSVTFSNAPEGVSQN-VIVTGHSDGTIQLWSGYKL------ 501 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~-g~~i~-----~-~~~~~~i~~i~~s~~pdg~~~~-~l~tg~~dg~I~iwd~~~~------ 501 (556)
+++ .++.|++||++ ++.+. . ..+...|.+++|+ |++ + ++++|+.||.|++||+..+
T Consensus 229 ~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~~l~~~~~dg~i~iwd~~~~~~~~~~ 298 (357)
T 3i2n_A 229 ATS-----LEGKFHVFDMRTQHPTKGFASVSEKAHKSTVWQVRHL--PQN---RELFLTAGGAGGLHLWKYEYPIQRSKK 298 (357)
T ss_dssp EEE-----STTEEEEEEEEEEETTTEEEEEEEECCSSCEEEEEEE--TTE---EEEEEEEETTSEEEEEEEECCSCC--C
T ss_pred EEC-----CCCeEEEEeCcCCCcccceeeeccCCCcCCEEEEEEC--CCC---CcEEEEEeCCCcEEEeecCCCcccccc
Confidence 998 89999999996 32211 1 1478899999999 888 6 8999999999999998643
Q ss_pred -------------eEEEEecCCCCCCeEEEEEecCCCEEE-EEcCCCcEEEEEcCCCCC
Q psy10778 502 -------------AHLLTLNTNVALPVIAVTYSCDSQHLY-ASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 502 -------------~~~~~~~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~V~vwdl~~~~~ 546 (556)
+.+..+. +|..+|++++|+|+++.|+ +++.||.|++||+.+.++
T Consensus 299 ~~~g~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~~ 356 (357)
T 3i2n_A 299 DSEGIEMGVAGSVSLLQNVT-LSTQPISSLDWSPDKRGLCVCSSFDQTVRVLIVTKLNK 356 (357)
T ss_dssp CTTSCCCCCCCEEEEEEEEE-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECC---
T ss_pred cCCCCccccccccceeeccc-cCCCCeeEEEEcCCCCeEEEEecCCCcEEEEECCCccc
Confidence 4566776 7899999999999999888 899999999999987553
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.97 E-value=7.8e-29 Score=255.67 Aligned_cols=230 Identities=12% Similarity=0.037 Sum_probs=180.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce----Ec----CCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV----IR----PPLGATIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~----~~----~~h~~~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.++.|+.|+.+|+|+......... .. ..+...+.+++|+|||+++++|+ .|++|+|||+.+.
T Consensus 96 ~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~-------- 167 (365)
T 4h5i_A 96 KITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDL-------- 167 (365)
T ss_dssp HHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTT--------
T ss_pred EEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCC--------
Confidence 456678899999999865432211 11 13456789999999999987654 7899999998865
Q ss_pred cCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE--eCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE--IPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 365 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~--l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+++..+ .|...|.+++|+|+|+++++++.++ +++|+..+++.+.. ... | ...|.+++|+|++..+++++.+..
T Consensus 168 -~~~~~~-~~~~~V~~v~fspdg~~l~s~s~~~-~~~~~~~~~~~~~~~~~~~-~-~~~v~~v~fspdg~~l~~~s~d~~ 242 (365)
T 4h5i_A 168 -TEKFEI-ETRGEVKDLHFSTDGKVVAYITGSS-LEVISTVTGSCIARKTDFD-K-NWSLSKINFIADDTVLIAASLKKG 242 (365)
T ss_dssp -EEEEEE-ECSSCCCEEEECTTSSEEEEECSSC-EEEEETTTCCEEEEECCCC-T-TEEEEEEEEEETTEEEEEEEESSS
T ss_pred -cEEEEe-CCCCceEEEEEccCCceEEecccee-EEEEEeccCcceeeeecCC-C-CCCEEEEEEcCCCCEEEEEecCCc
Confidence 333444 4778899999999999999998554 66666666665543 334 6 778999999999999999883210
Q ss_pred CCCCeEEEEEeCC-cE----EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeE
Q psy10778 443 TGGSILRLHTINA-QL----ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI 516 (556)
Q Consensus 443 ~~d~~I~iwdi~g-~~----i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 516 (556)
....+++|++.. .. ...+ .+...|++++|+ |+| ++||+|+.|+.|+|||+.+++++..+..+|..+|+
T Consensus 243 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~S--pdg---~~lasgs~D~~V~iwd~~~~~~~~~~~~gH~~~V~ 316 (365)
T 4h5i_A 243 -KGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVD--MKG---ELAVLASNDNSIALVKLKDLSMSKIFKQAHSFAIT 316 (365)
T ss_dssp -CCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEEC--TTS---CEEEEEETTSCEEEEETTTTEEEEEETTSSSSCEE
T ss_pred -ceeEEeecccccceecceeeeeecCCCCCeEeEEEC--CCC---CceEEEcCCCEEEEEECCCCcEEEEecCcccCCEE
Confidence 112688898863 21 1222 367899999999 999 89999999999999999999999987558999999
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 517 AVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+++|+|||++|++|+.|++|+||+++.
T Consensus 317 ~v~fSpdg~~laS~S~D~tvrvw~ip~ 343 (365)
T 4h5i_A 317 EVTISPDSTYVASVSAANTIHIIKLPL 343 (365)
T ss_dssp EEEECTTSCEEEEEETTSEEEEEECCT
T ss_pred EEEECCCCCEEEEEeCCCeEEEEEcCC
Confidence 999999999999999999999999975
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.6e-28 Score=251.70 Aligned_cols=230 Identities=14% Similarity=0.147 Sum_probs=193.4
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+|++|+.||.|++|++... +....+. +|...|++++|+++ +++|++|+.||.|++||+..+. ......
T Consensus 25 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~-------~~~~~~ 96 (379)
T 3jrp_A 25 RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------WSQIAV 96 (379)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTE-------EEEEEE
T ss_pred EEEEEECCCcEEEEecCCCcceeeeEec-CCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCc-------eeEeee
Confidence 8899999999999999743 3333443 79999999999987 9999999999999999998651 024567
Q ss_pred eeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeC-------------CCCe
Q psy10778 371 LLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSE-------------TNGE 433 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp-------------~~~~ 433 (556)
+.+|...|.+++|+|+ +.++++++.||.|++||+.++. ....+.. | ...|.+++|+| ++..
T Consensus 97 ~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~ 174 (379)
T 3jrp_A 97 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-H-AIGVNSASWAPATIEEDGEHNGTKESRK 174 (379)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEEC-C-TTCEEEEEECCCC----------CTTCE
T ss_pred ecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecC-C-CCceEEEEEcCccccccccccCCCCCCE
Confidence 7889999999999999 9999999999999999999873 3445666 7 89999999999 6899
Q ss_pred EEEEeecCcCCCCeEEEEEeC-Cc----EEEEe-ecCCCeEEEEEeeCCC---CCcceEEEEEeCCCeEEEEeCCCCe--
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQ----LITSL-ASELRITSVTFSNAPE---GVSQNVIVTGHSDGTIQLWSGYKLA-- 502 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~----~i~~~-~~~~~i~~i~~s~~pd---g~~~~~l~tg~~dg~I~iwd~~~~~-- 502 (556)
+++++ .++.|++||++ +. .+..+ .|...|.+++|+ |+ + ++|++++.||.|++||+.++.
T Consensus 175 l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~h~~~v~~~~~s--p~~~~~---~~l~s~~~dg~i~iwd~~~~~~~ 244 (379)
T 3jrp_A 175 FVTGG-----ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLR---SYLASVSQDRTCIIWTQDNEQGP 244 (379)
T ss_dssp EEEEE-----TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSS---EEEEEEETTSCEEEEEESSTTSC
T ss_pred EEEEe-----CCCeEEEEEecCCCcceeeEEEEecccCcEeEEEEC--CCCCCC---CeEEEEeCCCEEEEEeCCCCCcc
Confidence 99999 89999999996 32 33334 367899999999 88 7 899999999999999998764
Q ss_pred -EEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 503 -HLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 503 -~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
....+.. .|...|++++|+|++++|++++.||.|++|++...
T Consensus 245 ~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~dg~i~iw~~~~~ 288 (379)
T 3jrp_A 245 WKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLE 288 (379)
T ss_dssp CEEEESSSSCCSSCEEEEEECSSSCCEEEEESSSSEEEEEEEET
T ss_pred ceeeeeccccCCCcEEEEEEcCCCCEEEEecCCCcEEEEeCCCC
Confidence 2222221 57889999999999999999999999999999853
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=5.1e-30 Score=264.04 Aligned_cols=229 Identities=13% Similarity=0.096 Sum_probs=189.0
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++|+.||.|++|+..++ +....+. +|...|++++|+|++++|++|+.||+|++||+..+. .......+.
T Consensus 25 ~l~~~~~d~~i~iw~~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~------~~~~~~~~~ 97 (377)
T 3dwl_C 25 EFVTTTATNQVELYEQDGNGWKHARTFS-DHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDG------TWKQTLVLL 97 (377)
T ss_dssp EEECCCSSSCBCEEEEETTEEEECCCBC-CCSSCEEEEEECTTTCCEEEEETTSSEEEC------------CCCCEEECC
T ss_pred EEEEecCCCEEEEEEccCCceEEEEEEe-cCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCC------ceeeeeEec
Confidence 8899999999999999877 4444444 799999999999999999999999999999998762 113456778
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe---EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG---YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~---~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+|...|++++|+|++++|++|+.||.|++||+++++ ....+..+| ...|.+++|+|++..|++++ .|+.|+
T Consensus 98 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~l~~~~-----~d~~i~ 171 (377)
T 3dwl_C 98 RLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPL-RSTILSLDWHPNNVLLAAGC-----ADRKAY 171 (377)
T ss_dssp CCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSC-CSCEEEEEECTTSSEEEEEE-----SSSCEE
T ss_pred ccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeeccc-CCCeEEEEEcCCCCEEEEEe-----CCCEEE
Confidence 999999999999999999999999999999999876 356665436 88999999999999999999 899999
Q ss_pred EEEeC-------------------CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE----EEE
Q psy10778 450 LHTIN-------------------AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH----LLT 506 (556)
Q Consensus 450 iwdi~-------------------g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~----~~~ 506 (556)
+||++ ++++..+.|...|.+++|+ |++ ++|++|+.||.|++||+.+++. +..
T Consensus 172 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--p~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~ 246 (377)
T 3dwl_C 172 VLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGGWVHAVGFS--PSG---NALAYAGHDSSVTIAYPSAPEQPPRALIT 246 (377)
T ss_dssp EEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSSSEEEEEEC--TTS---SCEEEEETTTEEC-CEECSTTSCEEECCC
T ss_pred EEEEEecccCCCccccccccccchhhhhhcccCCceEEEEEEC--CCC---CEEEEEeCCCcEEEEECCCCCCcceeeEe
Confidence 99984 4455555678899999999 899 8999999999999999998876 666
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+. +|..+|++++|+|++++|++|+.++.+ +|+...
T Consensus 247 ~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~-~~~~~~ 281 (377)
T 3dwl_C 247 VK-LSQLPLRSLLWANESAIVAAGYNYSPI-LLQGNE 281 (377)
T ss_dssp EE-CSSSCEEEEEEEETTEEEEEESSSSEE-EECCCC
T ss_pred ec-CCCCceEEEEEcCCCCEEEEEcCCcEE-EEEeCC
Confidence 76 789999999999999999998866655 776653
|
| >2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A | Back alignment and structure |
|---|
Probab=99.97 E-value=2.5e-28 Score=244.22 Aligned_cols=207 Identities=17% Similarity=0.179 Sum_probs=176.1
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC--CCEEEEEcCCCc
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG--FSVAVSSSEDGT 398 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~ 398 (556)
.+|.+.|++++|+|+|++||+|+.|++|+||++.... .+.+..+.+|.++|++++|+++ +++|+||+.||+
T Consensus 6 ~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~-------~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~ 78 (297)
T 2pm7_B 6 NAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (297)
T ss_dssp CSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSC-------BCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTE
T ss_pred cCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCC-------cEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCE
Confidence 4799999999999999999999999999999986431 1456889999999999999864 889999999999
Q ss_pred EEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC-Cc---EEEEeecCCCeEEE
Q psy10778 399 CLLWDINTIG--YIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN-AQ---LITSLASELRITSV 470 (556)
Q Consensus 399 I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~-g~---~i~~~~~~~~i~~i 470 (556)
|++||+.+++ .+..+.. | ...|.+++|+|+ +..|++++ .|+.|++||++ +. ......|...|.++
T Consensus 79 v~iWd~~~~~~~~~~~~~~-h-~~~v~~v~~~p~~~g~~l~s~s-----~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~ 151 (297)
T 2pm7_B 79 VMIWKEENGRWSQIAVHAV-H-SASVNSVQWAPHEYGPMLLVAS-----SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (297)
T ss_dssp EEEEEBSSSCBCCCEEECC-C-SSCEEEEEECCGGGCSEEEEEE-----TTSEEEEEEBCSSSCBCCEEEECCSSCEEEE
T ss_pred EEEEEcCCCceEEEEEeec-C-CCceeEEEeCcCCCCcEEEEEE-----CCCcEEEEEecCCCceeeeeeecccCccceE
Confidence 9999999874 5667777 8 899999999997 78999999 89999999997 32 22233577899999
Q ss_pred EEeeCCCCC----------cceEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCCeEEEEEecCC---CEEEEEcCC
Q psy10778 471 TFSNAPEGV----------SQNVIVTGHSDGTIQLWSGYKLA----HLLTLNTNVALPVIAVTYSCDS---QHLYASNTE 533 (556)
Q Consensus 471 ~~s~~pdg~----------~~~~l~tg~~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~dg---~~l~sgs~D 533 (556)
+|+ |++. ..++|++|+.||.|++||+.+++ ....+. +|...|++++|+|++ .+|++++.|
T Consensus 152 ~~~--p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~-~H~~~V~~v~~sp~~~~~~~las~s~D 228 (297)
T 2pm7_B 152 SWA--PATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYMASVSQD 228 (297)
T ss_dssp EEC--CCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEEETT
T ss_pred eec--CCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEec-CCCCceEEEEECCCCCCceEEEEEECC
Confidence 999 5410 01689999999999999997765 566776 899999999999985 899999999
Q ss_pred CcEEEEEcCCC
Q psy10778 534 GLVIIWESSSH 544 (556)
Q Consensus 534 g~V~vwdl~~~ 544 (556)
|.|++||+.+.
T Consensus 229 ~~v~iWd~~~~ 239 (297)
T 2pm7_B 229 RTCIIWTQDNE 239 (297)
T ss_dssp SCEEEEEESST
T ss_pred CcEEEEEeCCC
Confidence 99999999774
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.97 E-value=1.3e-29 Score=255.96 Aligned_cols=231 Identities=15% Similarity=0.143 Sum_probs=188.0
Q ss_pred eEEeccCCCeEEEEeCCCCCC--cceEcCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPA--TPVIRPPLGATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~--~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+|++|+.|++|++||+.++.. ...+. +|.+.|.+++|++ ++++|++|+.|++|++||+..+. ......
T Consensus 27 ~lasgs~D~~v~lwd~~~~~~~~~~~l~-gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~-------~~~~~~ 98 (316)
T 3bg1_A 27 RLATCSSDRSVKIFDVRNGGQILIADLR-GHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGT-------WEKSHE 98 (316)
T ss_dssp EEEEEETTTEEEEEEEETTEEEEEEEEE-CCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSC-------CCEEEE
T ss_pred EEEEEeCCCeEEEEEecCCCcEEEEEEc-CCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCc-------ceEEEE
Confidence 899999999999999987642 33343 8999999999986 48999999999999999987541 123456
Q ss_pred eeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCeE---EEEeCCCCCCCCeeEEEEeCC---------------
Q psy10778 371 LLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIGY---IREIPCVDPNTPVSHVTMSET--------------- 430 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~~---v~~l~~~h~~~~V~~l~~sp~--------------- 430 (556)
+.+|...|.+++|+|+ +.+|++|+.||+|++||++.+.. ...+.. | ...|.+++|+|+
T Consensus 99 ~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~~~~~~~~~~~ 176 (316)
T 3bg1_A 99 HAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNA-H-TIGCNAVSWAPAVVPGSLIDHPSGQKP 176 (316)
T ss_dssp ECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTS-S-SSCBCCCEECCCCCC------CCSCCC
T ss_pred ccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeecc-c-cCCcceEEEccccCCccccccccccCc
Confidence 7899999999999997 78999999999999999987632 344556 7 789999999997
Q ss_pred --CCeEEEEeecCcCCCCeEEEEEeC-C---cEEEEe-ecCCCeEEEEEeeCCCC-CcceEEEEEeCCCeEEEEeCCCC-
Q psy10778 431 --NGEIASVLQTTKTGGSILRLHTIN-A---QLITSL-ASELRITSVTFSNAPEG-VSQNVIVTGHSDGTIQLWSGYKL- 501 (556)
Q Consensus 431 --~~~i~s~s~~~~~~d~~I~iwdi~-g---~~i~~~-~~~~~i~~i~~s~~pdg-~~~~~l~tg~~dg~I~iwd~~~~- 501 (556)
+..|++++ .|+.|++||++ + +.+..+ .|...|.+++|+ |++ ....+|++|+.||+|++|++.+.
T Consensus 177 ~~~~~l~sgs-----~D~~v~lWd~~~~~~~~~~~~l~~h~~~V~~v~~s--p~~~~~~~~las~s~D~~v~iw~~~~~~ 249 (316)
T 3bg1_A 177 NYIKRFASGG-----CDNLIKLWKEEEDGQWKEEQKLEAHSDWVRDVAWA--PSIGLPTSTIASCSQDGRVFIWTCDDAS 249 (316)
T ss_dssp CCCCBEECCB-----TTSBCCEEEECTTSCEEEEECCBCCSSCEEEEECC--CCSSCSCCEEEEEETTCEEEEEECSSTT
T ss_pred cccceEEEec-----CCCeEEEEEeCCCCccceeeecccCCCceEEEEec--CCCCCCCceEEEEcCCCeEEEEEccCcc
Confidence 36889988 89999999997 3 244444 477899999999 653 01168999999999999998762
Q ss_pred --e-EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 502 --A-HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 502 --~-~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+ ....+. .|...|.+++|+|++++|++++.||.|++|+...
T Consensus 250 ~~~~~~~~~~-~~~~~v~~v~~sp~g~~las~~~D~~v~lw~~~~ 293 (316)
T 3bg1_A 250 SNTWSPKLLH-KFNDVVWHVSWSITANILAVSGGDNKVTLWKESV 293 (316)
T ss_dssp CCCCBCCEEE-ECSSCEEEEEECTTTCCEEEEESSSCEEEEEECT
T ss_pred ccchhhhhhh-cCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEECC
Confidence 1 122333 5788999999999999999999999999999864
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.97 E-value=8.6e-29 Score=252.36 Aligned_cols=227 Identities=16% Similarity=0.137 Sum_probs=192.5
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL- 371 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l- 371 (556)
.++++|+.||.|++|+..+++....+. +|...|++++|+| ++++|++|+.||.|++||+..+ +.+..+
T Consensus 86 ~~l~~~~~dg~i~v~d~~~~~~~~~~~-~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~ 155 (366)
T 3k26_A 86 PLLAVAGSRGIIRIINPITMQCIKHYV-GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTD---------TLVAIFG 155 (366)
T ss_dssp EEEEEEETTCEEEEECTTTCCEEEEEE-SCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTT---------EEEEEEC
T ss_pred CEEEEecCCCEEEEEEchhceEeeeec-CCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecC---------eEEEEec
Confidence 389999999999999999888777776 7999999999999 8999999999999999999765 334555
Q ss_pred --eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE----------------------------EEeCCCCCCCC
Q psy10778 372 --LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI----------------------------REIPCVDPNTP 421 (556)
Q Consensus 372 --~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v----------------------------~~l~~~h~~~~ 421 (556)
.+|...|.+++|+|+++.+++++.||.|++||+++++.+ ..... | ...
T Consensus 156 ~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~ 233 (366)
T 3k26_A 156 GVEGHRDEVLSADYDLLGEKIMSCGMDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDI-H-RNY 233 (366)
T ss_dssp STTSCSSCEEEEEECTTSSEEEEEETTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSS-C-SSC
T ss_pred ccccccCceeEEEECCCCCEEEEecCCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccC-C-cce
Confidence 689999999999999999999999999999999976433 23334 6 789
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc--------------EEEEe-ecCCCeEEEEEeeCCCCCcceEEE
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ--------------LITSL-ASELRITSVTFSNAPEGVSQNVIV 485 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~--------------~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~ 485 (556)
|.+++|+ +..+++++ .++.|++||++ +. .+..+ .+...|.+++|++.+++ ++|+
T Consensus 234 v~~~~~~--~~~l~~~~-----~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~---~~l~ 303 (366)
T 3k26_A 234 VDCVRWL--GDLILSKS-----CENAIVCWKPGKMEDDIDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQ---KMLA 303 (366)
T ss_dssp CCEEEEE--TTEEEEEC-----SSSEEEEEEESSTTCCGGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTS---SEEE
T ss_pred EEEEEEc--CCEEEEEe-----cCCEEEEEeCCCccccccccccCCcchheeccccccCCcEEEEEEcCCCCC---cEEE
Confidence 9999999 67999998 89999999986 32 24444 36778999999943338 8999
Q ss_pred EEeCCCeEEEEeCCCCe----EEEEecCCC--CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 486 TGHSDGTIQLWSGYKLA----HLLTLNTNV--ALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 486 tg~~dg~I~iwd~~~~~----~~~~~~~~h--~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+|+.||.|++||+.+++ ....+. +| ...|++++|+|++++|++++.||.|++||+.+
T Consensus 304 ~~~~dg~i~vwd~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~ 366 (366)
T 3k26_A 304 LGNQVGKLYVWDLEVEDPHKAKCTTLT-HHKCGAAIRQTSFSRDSSILIAVCDDASIWRWDRLR 366 (366)
T ss_dssp EECTTSCEEEEECCSSSGGGCEEEEEC-CTTCCSCEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EEecCCcEEEEECCCCCCccccceEEc-ccccCCceEEEEeCCCCCeEEEEeCCCEEEEEEecC
Confidence 99999999999998875 444665 55 79999999999999999999999999999853
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=2.1e-28 Score=273.74 Aligned_cols=229 Identities=16% Similarity=0.182 Sum_probs=195.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||+.++.....+. +|...|++++|+|++++|++|+.|++|++||..... .. .......+|
T Consensus 444 ~l~sgs~Dg~v~vwd~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~----~~--~~~~~~~~h 516 (694)
T 3dm0_A 444 FALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGEC----KY--TISEGGEGH 516 (694)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCE----EE--EECSSTTSC
T ss_pred EEEEEeCCCcEEEEECCCCcceeEEe-CCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCc----ce--eeccCCCCC
Confidence 89999999999999999887766665 899999999999999999999999999999975320 00 011122579
Q ss_pred CccEEEEEEccCC--CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGF--SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~--~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
...|.+++|+|++ ..+++|+.||+|++||+++++....+.+ | ...|++++|+|++.+|++++ .|+.|++||
T Consensus 517 ~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~-h-~~~v~~v~~spdg~~l~sg~-----~Dg~i~iwd 589 (694)
T 3dm0_A 517 RDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAG-H-TGYVSTVAVSPDGSLCASGG-----KDGVVLLWD 589 (694)
T ss_dssp SSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSBCEEEE
T ss_pred CCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcC-C-CCCEEEEEEeCCCCEEEEEe-----CCCeEEEEE
Confidence 9999999999987 5899999999999999999999999999 9 99999999999999999999 899999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------------CC
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV------------------AL 513 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h------------------~~ 513 (556)
++ ++.+..+.+...+.+++|+ |++ .++++++ ++.|++||+.+++.+..+.... ..
T Consensus 590 ~~~~~~~~~~~~~~~v~~~~~s--p~~---~~l~~~~-~~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 663 (694)
T 3dm0_A 590 LAEGKKLYSLEANSVIHALCFS--PNR---YWLCAAT-EHGIKIWDLESKSIVEDLKVDLKAEAEKADNSGPAATKRKVI 663 (694)
T ss_dssp TTTTEEEECCBCSSCEEEEEEC--SSS---SEEEEEE-TTEEEEEETTTTEEEEEECCCCC----------------CCC
T ss_pred CCCCceEEEecCCCcEEEEEEc--CCC---cEEEEEc-CCCEEEEECCCCCChhhhccccccccccccccccccCCceeE
Confidence 97 8888888888899999999 887 6666665 5679999999999888775211 12
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+++++|+|+|++|++|+.||.|++|++..
T Consensus 664 ~~~~l~~spdg~~l~sgs~Dg~i~iW~i~~ 693 (694)
T 3dm0_A 664 YCTSLNWSADGSTLFSGYTDGVIRVWGIGR 693 (694)
T ss_dssp CEEEEEECTTSSEEEEEETTSEEEEEEC--
T ss_pred EeeeEEEcCCCCEEEEEcCCCeEEEEeccC
Confidence 378999999999999999999999999853
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.97 E-value=5e-28 Score=247.77 Aligned_cols=227 Identities=15% Similarity=0.125 Sum_probs=198.6
Q ss_pred eEEeccCCCeEEEEeCCCCC--CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELP--ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~--~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++|+.|+.|++|+..+++ ....+. +|...|++++|+|++++|++|+.||.|++|++..+. . .....+.
T Consensus 22 ~l~~~~~d~~v~i~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~----~---~~~~~~~ 93 (372)
T 1k8k_C 22 QIAICPNNHEVHIYEKSGNKWVQVHELK-EHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRT----W---KPTLVIL 93 (372)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEE-CCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTE----E---EEEEECC
T ss_pred EEEEEeCCCEEEEEeCCCCcEEeeeeec-CCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCe----e---eeeEEee
Confidence 78889999999999998875 455554 799999999999999999999999999999997651 0 1123456
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe---EEEEe-CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG---YIREI-PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~---~v~~l-~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.|...|.+++|+|+++++++++.||.|++||+..++ ....+ .. | ...|.+++|+|++..+++++ .++.|
T Consensus 94 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-----~dg~i 166 (372)
T 1k8k_C 94 RINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-I-RSTVLSLDWHPNSVLLAAGS-----CDFKC 166 (372)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-C-CSCEEEEEECTTSSEEEEEE-----TTSCE
T ss_pred cCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecc-c-CCCeeEEEEcCCCCEEEEEc-----CCCCE
Confidence 799999999999999999999999999999998875 23444 45 7 88999999999999999999 89999
Q ss_pred EEEEeC-------------------CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 449 RLHTIN-------------------AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 449 ~iwdi~-------------------g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
++||++ ++.+..+ .+...+.+++|+ |++ ++|++++.||.|++||+.+++.+..+.
T Consensus 167 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~~ 241 (372)
T 1k8k_C 167 RIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS--ANG---SRVAWVSHDSTVCLADADKKMAVATLA 241 (372)
T ss_dssp EEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC--SSS---SEEEEEETTTEEEEEEGGGTTEEEEEE
T ss_pred EEEEcccccccccccccccccccchhhheEecCCCCCeEEEEEEC--CCC---CEEEEEeCCCEEEEEECCCCceeEEEc
Confidence 999952 6677777 467899999999 888 899999999999999999999999998
Q ss_pred CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 509 TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 509 ~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|..+|++++|+|+++++++| .||.|++|++.+
T Consensus 242 -~~~~~v~~~~~~~~~~~l~~~-~d~~i~i~~~~~ 274 (372)
T 1k8k_C 242 -SETLPLLAVTFITESSLVAAG-HDCFPVLFTYDS 274 (372)
T ss_dssp -CSSCCEEEEEEEETTEEEEEE-TTSSCEEEEEET
T ss_pred -cCCCCeEEEEEecCCCEEEEE-eCCeEEEEEccC
Confidence 788899999999999988887 899999999987
|
| >3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-28 Score=274.11 Aligned_cols=232 Identities=19% Similarity=0.227 Sum_probs=197.7
Q ss_pred ceEEeccCCCeEEEEeCCCCCCc-----ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 294 GMICWNECDNLIRLKMSKELPAT-----PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~-----~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
.+|++|+.|++|++|++.+.... ..+ .+|...|++++|+|++++|++|+.||+|++||+..+ ...
T Consensus 396 ~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~-~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~---------~~~ 465 (694)
T 3dm0_A 396 DIIVSASRDKSIILWKLTKDDKAYGVAQRRL-TGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAG---------VST 465 (694)
T ss_dssp SEEEEEETTSEEEEEECCCSTTCSCEEEEEE-ECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEE
T ss_pred CEEEEEeCCCcEEEEEccCCCccccccccee-cCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCC---------cce
Confidence 38999999999999998754321 223 389999999999999999999999999999999765 445
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe---CCCCCCCCeeEEEEeCCC--CeEEEEeecCcC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI---PCVDPNTPVSHVTMSETN--GEIASVLQTTKT 443 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l---~~~h~~~~V~~l~~sp~~--~~i~s~s~~~~~ 443 (556)
..+.+|...|++++|+|+++.|++|+.|++|++||+......... .. | ...|.+++|+|++ ..+++++
T Consensus 466 ~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~l~s~s----- 538 (694)
T 3dm0_A 466 RRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEG-H-RDWVSCVRFSPNTLQPTIVSAS----- 538 (694)
T ss_dssp EEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTS-C-SSCEEEEEECSCSSSCEEEEEE-----
T ss_pred eEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCC-C-CCcEEEEEEeCCCCcceEEEEe-----
Confidence 788999999999999999999999999999999998754433332 34 6 7789999999986 5788888
Q ss_pred CCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 444 GGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
.|+.|++||++ +++...+ .|...|++++|+ |++ ++|++|+.||.|++||+.+++.+..+. +...|.+++|+
T Consensus 539 ~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~s--pdg---~~l~sg~~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s 611 (694)
T 3dm0_A 539 WDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS--PDG---SLCASGGKDGVVLLWDLAEGKKLYSLE--ANSVIHALCFS 611 (694)
T ss_dssp TTSCEEEEETTTCCEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSBCEEEETTTTEEEECCB--CSSCEEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCCEEEEEEe--CCC---CEEEEEeCCCeEEEEECCCCceEEEec--CCCcEEEEEEc
Confidence 89999999997 6676666 478899999999 899 899999999999999999999988886 45789999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|++.+|++++ ++.|++||+.++..+..+
T Consensus 612 p~~~~l~~~~-~~~i~iwd~~~~~~~~~~ 639 (694)
T 3dm0_A 612 PNRYWLCAAT-EHGIKIWDLESKSIVEDL 639 (694)
T ss_dssp SSSSEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred CCCcEEEEEc-CCCEEEEECCCCCChhhh
Confidence 9998888766 566999999987654433
|
| >1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X | Back alignment and structure |
|---|
Probab=99.96 E-value=1.3e-27 Score=247.43 Aligned_cols=235 Identities=12% Similarity=0.146 Sum_probs=197.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCC-----cceEcCCC-----CCceEEEEEc----CCCCE-EEEEeCCCcEEEEEeee---
Q psy10778 294 GMICWNECDNLIRLKMSKELPA-----TPVIRPPL-----GATIATATTA----PDCHT-LWLGLTSGNILVYEYEL--- 355 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~-----~~~~~~~h-----~~~V~~i~~s----~dg~~-l~tgs~Dg~I~vwd~~~--- 355 (556)
.++++|+.||.|++|++.+++. ...+. .| ...|.+++|+ |++++ |++|+.||.|++||+..
T Consensus 82 ~~l~s~~~dg~i~iw~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 160 (397)
T 1sq9_A 82 CLVATTSFSGDLLFYRITREDETKKVIFEKLD-LLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFAD 160 (397)
T ss_dssp EEEEEEETTSCEEEEEEEECTTTCCEEEEEEC-CSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSS
T ss_pred cEEEEEcCCCCEEEEEccCCcccccccceeec-ccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCcccc
Confidence 3899999999999999988775 55554 56 5899999999 99999 99999999999999987
Q ss_pred ---ccCcccccccCCCeEe-------eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC--C--CCCC
Q psy10778 356 ---NASTNKIEFCKPPTIL-------LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV--D--PNTP 421 (556)
Q Consensus 356 ---~~~~~~~~~~~~~~~l-------~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~--h--~~~~ 421 (556)
.. .....+...+ ..|...|.+++|+|++ .+++++.||.|++||+++++.+..+... | ....
T Consensus 161 ~~~~~----~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~ 235 (397)
T 1sq9_A 161 ESNSL----TLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNS 235 (397)
T ss_dssp HHHHT----TTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCC
T ss_pred ccccc----eeeccCcceeeeeeccccCCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCc
Confidence 41 1101111266 4589999999999999 9999999999999999999888777530 1 0367
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCC---CeEEEEEeC-CcEEEEee--------------cCCCeEEEEEeeCCCCCcceE
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGG---SILRLHTIN-AQLITSLA--------------SELRITSVTFSNAPEGVSQNV 483 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d---~~I~iwdi~-g~~i~~~~--------------~~~~i~~i~~s~~pdg~~~~~ 483 (556)
|.+++|+|++..|++++ .+ +.|++||++ ++.+..+. +...|.+++|+ |++ ++
T Consensus 236 i~~i~~~~~~~~l~~~~-----~d~~~g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~ 305 (397)
T 1sq9_A 236 IRSVKFSPQGSLLAIAH-----DSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSG---ET 305 (397)
T ss_dssp EEEEEECSSTTEEEEEE-----EETTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSS---SE
T ss_pred cceEEECCCCCEEEEEe-----cCCCCceEEEEECCCCcccceeccCcccccccccccccCCcEEEEEEC--CCC---CE
Confidence 99999999999999998 78 999999997 77777774 68899999999 888 89
Q ss_pred EEEEeCCCeEEEEeCCCCeEEEEecC-----CC---------------CCCeEEEEEecCC----------CEEEEEcCC
Q psy10778 484 IVTGHSDGTIQLWSGYKLAHLLTLNT-----NV---------------ALPVIAVTYSCDS----------QHLYASNTE 533 (556)
Q Consensus 484 l~tg~~dg~I~iwd~~~~~~~~~~~~-----~h---------------~~~V~~l~~s~dg----------~~l~sgs~D 533 (556)
|++|+.||.|++||+.+++.+..+.. +| ..+|++++|+|++ ++|++++.|
T Consensus 306 l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~d 385 (397)
T 1sq9_A 306 LCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLD 385 (397)
T ss_dssp EEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETT
T ss_pred EEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhhhccccccccccCCceeEEEeccccccccccccccceEEEecCC
Confidence 99999999999999999999988872 35 8999999999998 799999999
Q ss_pred CcEEEEEcCCC
Q psy10778 534 GLVIIWESSSH 544 (556)
Q Consensus 534 g~V~vwdl~~~ 544 (556)
|.|++|++.++
T Consensus 386 g~i~iw~~~~g 396 (397)
T 1sq9_A 386 RSIRWFREAGG 396 (397)
T ss_dssp TEEEEEEEEC-
T ss_pred CcEEEEEcCCC
Confidence 99999999875
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=248.68 Aligned_cols=233 Identities=13% Similarity=0.128 Sum_probs=202.2
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc-----------
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI----------- 362 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~----------- 362 (556)
.++++|+.||.|++|+ .+++....+. .|...|++++|+|++++|++++.||.|++|++..+......
T Consensus 121 ~~l~~~~~dg~i~i~~-~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 198 (425)
T 1r5m_A 121 NSIVTGVENGELRLWN-KTGALLNVLN-FHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFELKETGGSSIN 198 (425)
T ss_dssp SEEEEEETTSCEEEEE-TTSCEEEEEC-CCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECCC--------
T ss_pred CEEEEEeCCCeEEEEe-CCCCeeeecc-CCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeeccccCcccee
Confidence 3899999999999999 4555555554 79999999999999999999999999999998643210000
Q ss_pred ------------------------------------cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 363 ------------------------------------EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 363 ------------------------------------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
...+.+..+.+|...|.+++|+|+++++++++.||.|++||+.+
T Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 278 (425)
T 1r5m_A 199 AENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGN 278 (425)
T ss_dssp -------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSS
T ss_pred eccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCC
Confidence 00134556778999999999999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEE
Q psy10778 407 IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 407 ~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l 484 (556)
++.+..+.. | ...|.+++|+|++ .+++++ .++.|++||++ ++.+..+. +...+.+++|+ |++ ++|
T Consensus 279 ~~~~~~~~~-~-~~~i~~~~~~~~~-~l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~s--~~~---~~l 345 (425)
T 1r5m_A 279 GNSQNCFYG-H-SQSIVSASWVGDD-KVISCS-----MDGSVRLWSLKQNTLLALSIVDGVPIFAGRIS--QDG---QKY 345 (425)
T ss_dssp BSCSEEECC-C-SSCEEEEEEETTT-EEEEEE-----TTSEEEEEETTTTEEEEEEECTTCCEEEEEEC--TTS---SEE
T ss_pred CccceEecC-C-CccEEEEEECCCC-EEEEEe-----CCCcEEEEECCCCcEeEecccCCccEEEEEEc--CCC---CEE
Confidence 999999988 8 8999999999998 888888 89999999997 77777665 57899999999 888 899
Q ss_pred EEEeCCCeEEEEeCCCCe--------------------EEEEecCCCCC--CeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 485 VTGHSDGTIQLWSGYKLA--------------------HLLTLNTNVAL--PVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~~~--------------------~~~~~~~~h~~--~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
++|+.||.|++||+.+++ .+..+. +|.. .|++++|+|++++|++++.||.|++|+++
T Consensus 346 ~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~ 424 (425)
T 1r5m_A 346 AVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQ-SSQDNDYIFDLSWNCAGNKISVAYSLQEGSVVAIP 424 (425)
T ss_dssp EEEETTSCEEEEECHHHHC--------------CEECCEEEEEC-CTTCCCCEEEEEECTTSSEEEEEESSSCCEEEECC
T ss_pred EEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhc-CcccCCceEEEEccCCCceEEEEecCceEEEEeec
Confidence 999999999999998888 888887 6755 99999999999999999999999999986
|
| >3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=7.4e-29 Score=252.22 Aligned_cols=232 Identities=14% Similarity=0.141 Sum_probs=197.0
Q ss_pred eEEeccC---CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC---CCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNEC---DNLIRLKMSKELPATPVIRPPLGATIATATTAPD---CHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~---Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d---g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
++++|+. ||.|++|++.+++.......+|...|++++|+|+ +++|++|+.||.|++|++..+. ..+
T Consensus 33 l~~~~s~~~~d~~v~iw~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~--------~~~ 104 (357)
T 3i2n_A 33 FVTMGNFARGTGVIQLYEIQHGDLKLLREIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPE--------MPV 104 (357)
T ss_dssp EEEEEC--CCCEEEEEEEECSSSEEEEEEEEESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCS--------SCS
T ss_pred EEEecCccCCCcEEEEEeCCCCcccceeeecccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCC--------ccE
Confidence 7778877 9999999999887766655579999999999998 6999999999999999998751 266
Q ss_pred eEeeCCCccEEEEEE------ccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCC----CeeEEE----EeCCCCe
Q psy10778 369 TILLGHSACVTDLYL------CAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNT----PVSHVT----MSETNGE 433 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~------s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~----~V~~l~----~sp~~~~ 433 (556)
..+.+|...|.+++| +++++.|++++.||.|++||+.+++ .+..+.. + .. .+.+++ |+|++..
T Consensus 105 ~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~-~-~~~~~~~v~~~~~~~~~~~~~~~ 182 (357)
T 3i2n_A 105 YSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEP-V-QGENKRDCWTVAFGNAYNQEERV 182 (357)
T ss_dssp EEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEEECTTSCSSCSEEECC-C-TTSCCCCEEEEEEECCCC-CCCE
T ss_pred EEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEEEeCCCCCCcceeccc-c-CCCCCCceEEEEEEeccCCCCCE
Confidence 889999999999955 6789999999999999999999886 6777765 4 33 788888 6789999
Q ss_pred EEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCC---CCCcceEEEEEeCCCeEEEEeCCCCeEEEEec-
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAP---EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN- 508 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~p---dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~- 508 (556)
+++++ .++.|++||++ ++......+...+.+++|+ | ++ .+|++|+.||.|++||+.+++.+..+.
T Consensus 183 l~~~~-----~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~--~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 252 (357)
T 3i2n_A 183 VCAGY-----DNGDIKLFDLRNMALRWETNIKNGVCSLEFD--RKDISM---NKLVATSLEGKFHVFDMRTQHPTKGFAS 252 (357)
T ss_dssp EEEEE-----TTSEEEEEETTTTEEEEEEECSSCEEEEEES--CSSSSC---CEEEEEESTTEEEEEEEEEEETTTEEEE
T ss_pred EEEEc-----cCCeEEEEECccCceeeecCCCCceEEEEcC--CCCCCC---CEEEEECCCCeEEEEeCcCCCcccceee
Confidence 99999 89999999998 6666666788999999999 7 77 899999999999999997765433322
Q ss_pred ---CCCCCCeEEEEEecCCC-EEEEEcCCCcEEEEEcCCCCC
Q psy10778 509 ---TNVALPVIAVTYSCDSQ-HLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 509 ---~~h~~~V~~l~~s~dg~-~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
.+|...|++++|+|+++ +|++++.||.|++||+.+...
T Consensus 253 ~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~ 294 (357)
T 3i2n_A 253 VSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQ 294 (357)
T ss_dssp EEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSC
T ss_pred eccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcc
Confidence 16899999999999998 899999999999999987543
|
| >4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.6e-28 Score=251.99 Aligned_cols=230 Identities=17% Similarity=0.198 Sum_probs=202.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+++++.||.|++|+..+++........|...|++++|+|++++|++|+.||.|++||+..+ +.+..+.+|
T Consensus 105 ~l~~~~~d~~v~lw~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~ 175 (401)
T 4aez_A 105 NVVAVALERNVYVWNADSGSVSALAETDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQ---------TKLRTMAGH 175 (401)
T ss_dssp SEEEEEETTEEEEEETTTCCEEEEEECCTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTC---------CEEEEECCC
T ss_pred CEEEEECCCeEEEeeCCCCcEeEeeecCCCCCEEEEEECCCCCEEEEECCCCeEEEEECcCC---------eEEEEecCC
Confidence 45667799999999999998888887678999999999999999999999999999998765 556788899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCC-CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDIN-TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~-~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...|.+++|+ ++.+++|+.||.|++||++ ....+..+.. | ...|.+++|+|++..+++++ .|+.|++||+
T Consensus 176 ~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~s~~-----~d~~v~iwd~ 246 (401)
T 4aez_A 176 QARVGCLSWN--RHVLSSGSRSGAIHHHDVRIANHQIGTLQG-H-SSEVCGLAWRSDGLQLASGG-----NDNVVQIWDA 246 (401)
T ss_dssp SSCEEEEEEE--TTEEEEEETTSEEEEEETTSSSCEEEEEEC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEET
T ss_pred CCceEEEEEC--CCEEEEEcCCCCEEEEecccCcceeeEEcC-C-CCCeeEEEEcCCCCEEEEEe-----CCCeEEEccC
Confidence 9999999994 5799999999999999999 4667788888 8 89999999999999999999 8999999999
Q ss_pred C-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 454 N-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGH--SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 454 ~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
+ ++.+..+ .+...|.+++|+ |++. .++++|+ .||.|++||+.+++.+..+. +...|++++|+|+++.+++
T Consensus 247 ~~~~~~~~~~~~~~~v~~~~~~--p~~~--~ll~~~~gs~d~~i~i~d~~~~~~~~~~~--~~~~v~~~~~s~~~~~l~~ 320 (401)
T 4aez_A 247 RSSIPKFTKTNHNAAVKAVAWC--PWQS--NLLATGGGTMDKQIHFWNAATGARVNTVD--AGSQVTSLIWSPHSKEIMS 320 (401)
T ss_dssp TCSSEEEEECCCSSCCCEEEEC--TTST--TEEEEECCTTTCEEEEEETTTCCEEEEEE--CSSCEEEEEECSSSSEEEE
T ss_pred CCCCccEEecCCcceEEEEEEC--CCCC--CEEEEecCCCCCEEEEEECCCCCEEEEEe--CCCcEEEEEECCCCCeEEE
Confidence 8 6777666 478899999999 7653 5777765 79999999999999999987 5688999999999999999
Q ss_pred --EcCCCcEEEEEcCCCCCcC
Q psy10778 530 --SNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 530 --gs~Dg~V~vwdl~~~~~~~ 548 (556)
|+.||.|++|++.+++...
T Consensus 321 ~~g~~dg~i~v~~~~~~~~~~ 341 (401)
T 4aez_A 321 THGFPDNNLSIWSYSSSGLTK 341 (401)
T ss_dssp EECTTTCEEEEEEEETTEEEE
T ss_pred EeecCCCcEEEEecCCcccee
Confidence 5589999999998854443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=252.70 Aligned_cols=232 Identities=13% Similarity=0.142 Sum_probs=196.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-PLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++|+.||.|++|+..+++....+.. +|...|.+++|+| ++++|++|+.||.|++||+... ....+.
T Consensus 88 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----------~~~~~~ 157 (383)
T 3ei3_B 88 TVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGS----------VIQVFA 157 (383)
T ss_dssp EEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSC----------EEEEEE
T ss_pred EEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCC----------ceEEEe
Confidence 899999999999999998887777653 6999999999999 7899999999999999998742 223343
Q ss_pred ---CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeE
Q psy10778 373 ---GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSIL 448 (556)
Q Consensus 373 ---~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I 448 (556)
+|...|.+++|+|+++.+++|+.||.|++||+ +++.+..+.. | ...|.+++|+|++. .+++++ .|+.|
T Consensus 158 ~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~-~~~~~~~~~~-h-~~~v~~~~~~~~~~~~l~s~~-----~d~~i 229 (383)
T 3ei3_B 158 KTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGL-DGHEIFKEKL-H-KAKVTHAEFNPRCDWLMATSS-----VDATV 229 (383)
T ss_dssp CCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEET-TSCEEEEEEC-S-SSCEEEEEECSSCTTEEEEEE-----TTSEE
T ss_pred ccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEEC-CCCEEEEecc-C-CCcEEEEEECCCCCCEEEEEe-----CCCEE
Confidence 45588999999999999999999999999999 5788889988 8 89999999999998 888888 89999
Q ss_pred EEEEeC-----CcEEEEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CCC----
Q psy10778 449 RLHTIN-----AQLITSLASELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NVA---- 512 (556)
Q Consensus 449 ~iwdi~-----g~~i~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h~---- 512 (556)
++||++ +..+..+.+...|.+++|+ | ++ ++|++++.||.|++||+.+++.+..+.. .|.
T Consensus 230 ~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~---~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (383)
T 3ei3_B 230 KLWDLRNIKDKNSYIAEMPHEKPVNAAYFN--PTDS---TKLLTTDQRNEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIK 304 (383)
T ss_dssp EEEEGGGCCSTTCEEEEEECSSCEEEEEEC--TTTS---CEEEEEESSSEEEEEETTBTTSCSEEEECCBCCCTTSCCCC
T ss_pred EEEeCCCCCcccceEEEecCCCceEEEEEc--CCCC---CEEEEEcCCCcEEEEECCCCccccccccccccccccccceE
Confidence 999996 5677777889999999999 8 88 8999999999999999988776555541 112
Q ss_pred ------CCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 513 ------LPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 513 ------~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..+..++++|++++ +|+.||.|++||+.+++.+..+.
T Consensus 305 ~~~~p~~~~~~~~~s~dg~~--s~s~d~~i~iwd~~~~~~~~~l~ 347 (383)
T 3ei3_B 305 ATWHPMYDLIVAGRYPDDQL--LLNDKRTIDIYDANSGGLVHQLR 347 (383)
T ss_dssp CEECSSSSEEEEECBCCTTT--CTTCCCCEEEEETTTCCEEEEEC
T ss_pred EeccCCCCceEEEecCCccc--ccCCCCeEEEEecCCCceeeeec
Confidence 34455677777766 77899999999999987766654
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.8e-29 Score=269.75 Aligned_cols=236 Identities=12% Similarity=0.043 Sum_probs=187.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce---EcCCCCCceEEEEEcCC------CCEEEEEeCCCcEEEEEeeeccCccc--cc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV---IRPPLGATIATATTAPD------CHTLWLGLTSGNILVYEYELNASTNK--IE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~---~~~~h~~~V~~i~~s~d------g~~l~tgs~Dg~I~vwd~~~~~~~~~--~~ 363 (556)
++++|+.|++|+||++.+++.... ....|.+.|.+++|+|+ +.+||+|+.||+|++|++..+..... ..
T Consensus 175 ~laS~s~D~tI~iWd~~~~~~~~~~~~~l~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~ 254 (524)
T 2j04_B 175 MFDKEKHSSCIQIFKMNTSTLHCVKVQTIVHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKM 254 (524)
T ss_dssp -------CEEEEEEEEETTTCCEEEEEEEEECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEEC
T ss_pred hhccCCCCceEEEEEccCCCCCceEEEEEEecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCcccccccee
Confidence 678999999999999987764321 11257789999999996 57999999999999999976521100 01
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEE--EEeCCC-CeEEEEee
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIPCVDPNTPVSHV--TMSETN-GEIASVLQ 439 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l--~~sp~~-~~i~s~s~ 439 (556)
...+...+.+|...|++++|+++ ..|++|+.||+|++||++++. ....+.. | ...|.++ ++++++ ..|++++
T Consensus 255 ~~~p~~~l~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~~~~~~~~~-H-~~~V~sv~~~~s~~g~~~laS~S- 330 (524)
T 2j04_B 255 CEKPSLTLSLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPEVPSFYDQV-H-DSYILSVSTAYSDFEDTVVSTVA- 330 (524)
T ss_dssp CCSCSEEECCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCSSCSEEEEC-S-SSCEEEEEEECCTTSCCEEEEEE-
T ss_pred ecCceEEEEcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCCCceEEeec-c-cccEEEEEEEcCCCCCeEEEEec-
Confidence 11345678999999999999986 489999999999999999763 4556788 8 8999999 567887 7899999
Q ss_pred cCcCCCCeEEEEEeC-CcEEEEe-ecC--CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCe
Q psy10778 440 TTKTGGSILRLHTIN-AQLITSL-ASE--LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPV 515 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~-g~~i~~~-~~~--~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V 515 (556)
.|++|++||++ ++.+..+ .+. ..+.+++|+ |++ ..+++++.|++|++||++++.++..+. +|...|
T Consensus 331 ----~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~fs--p~~---~~l~s~~~d~tv~lwd~~~~~~~~~l~-gH~~~V 400 (524)
T 2j04_B 331 ----VDGYFYIFNPKDIATTKTTVSRFRGSNLVPVVYC--PQI---YSYIYSDGASSLRAVPSRAAFAVHPLV-SRETTI 400 (524)
T ss_dssp ----TTSEEEEECGGGHHHHCEEEEECSCCSCCCEEEE--TTT---TEEEEECSSSEEEEEETTCTTCCEEEE-ECSSCE
T ss_pred ----cCCeEEEEECCCCCcccccccccccCcccceEeC--CCc---CeEEEeCCCCcEEEEECcccccceeee-cCCCce
Confidence 99999999997 4433333 222 358899999 888 789999999999999999999888887 799999
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 516 IAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
++++|+|+|+.|++|+.||+|++||+..+
T Consensus 401 ~sva~Sp~g~~l~Sgs~Dgtv~lwd~~~~ 429 (524)
T 2j04_B 401 TAIGVSRLHPMVLAGSADGSLIITNAARR 429 (524)
T ss_dssp EEEECCSSCCBCEEEETTTEEECCBSCSS
T ss_pred EEEEeCCCCCeEEEEECCCEEEEEechHh
Confidence 99999999999999999999999998653
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.1e-27 Score=253.84 Aligned_cols=225 Identities=18% Similarity=0.195 Sum_probs=200.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||..+++....+. +|.+.|++++|++++ .+++|+.||+|++||+.++ +.+..+.+|
T Consensus 134 ~l~sgs~dg~i~vwd~~~~~~~~~~~-~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~---------~~~~~~~~h 202 (464)
T 3v7d_B 134 YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKG---------CCTHVFEGH 202 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTT---------EEEEEECCC
T ss_pred EEEEEcCCCcEEEEECCCCcEEEEEe-CCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCC---------cEEEEECCC
Confidence 89999999999999999988777776 899999999999987 9999999999999999866 456788899
Q ss_pred CccEEEEEEc--cCCCEEEEEcCCCcEEEEeCCCCeE-----------------------EEEeCCCCCCCCeeEEEEeC
Q psy10778 375 SACVTDLYLC--AGFSVAVSSSEDGTCLLWDINTIGY-----------------------IREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 375 ~~~V~~l~~s--~~~~~l~sgs~Dg~I~iwdl~~~~~-----------------------v~~l~~~h~~~~V~~l~~sp 429 (556)
.+.|.+++|+ +++.++++|+.||+|++||+.++.. +..+.+ | ...+.++ ++
T Consensus 203 ~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~--~~ 278 (464)
T 3v7d_B 203 NSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG-H-MASVRTV--SG 278 (464)
T ss_dssp SSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEESCGGGCTTEEEEECC-C-SSCEEEE--EE
T ss_pred CCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEeeccCCCeEEEEEccC-c-cceEEEE--cC
Confidence 9999999998 5778999999999999999987652 456666 7 7777776 67
Q ss_pred CCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 430 TNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 430 ~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
++..+++++ .|+.|++||++ ++.+..+. |...|.+++|+ +++ +.+++|+.||.|++||+.+++.+..+
T Consensus 279 ~~~~l~~~~-----~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~sg~~dg~i~vwd~~~~~~~~~~ 348 (464)
T 3v7d_B 279 HGNIVVSGS-----YDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD--HER---KRCISASMDTTIRIWDLENGELMYTL 348 (464)
T ss_dssp ETTEEEEEE-----TTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTT---TEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred CCCEEEEEe-----CCCeEEEEECCCCcEEEEecCCCCCEEEEEEc--CCC---CEEEEEeCCCcEEEEECCCCcEEEEE
Confidence 789999999 89999999997 77777774 77899999999 888 89999999999999999999999999
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
. +|...|.+++|+ +.+|++++.||.|++||+.+....
T Consensus 349 ~-~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~ 385 (464)
T 3v7d_B 349 Q-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRK 385 (464)
T ss_dssp C-CCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEE
T ss_pred e-CCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCcee
Confidence 8 899999999997 589999999999999999886544
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=4.3e-29 Score=263.46 Aligned_cols=231 Identities=13% Similarity=0.196 Sum_probs=181.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-CCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-PPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|++|+.||+|+|||+.+++....+. .+|.+.|++++|+| ++++|++|+.||+|++||+.... . .......
T Consensus 134 ~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~----~---~~~~~~~ 206 (435)
T 4e54_B 134 TVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNI----L---RVFASSD 206 (435)
T ss_dssp CEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCE----E---EEEECCS
T ss_pred EEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCc----e---eEEeccC
Confidence 89999999999999998776655544 37999999999998 68999999999999999986531 0 0011122
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iw 451 (556)
.+...+.+++|++++.+|++|+.||.|++||++ ++.+..+.. | ...|.+++|+|++. .+++++ .|+.|++|
T Consensus 207 ~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~-~~~~~~~~~-h-~~~v~~v~~~p~~~~~~~s~s-----~d~~v~iw 278 (435)
T 4e54_B 207 TINIWFCSLDVSASSRMVVTGDNVGNVILLNMD-GKELWNLRM-H-KKKVTHVALNPCCDWFLATAS-----VDQTVKIW 278 (435)
T ss_dssp SCSCCCCCEEEETTTTEEEEECSSSBEEEEESS-SCBCCCSBC-C-SSCEEEEEECTTCSSEEEEEE-----TTSBCCEE
T ss_pred CCCccEEEEEECCCCCEEEEEeCCCcEeeeccC-cceeEEEec-c-cceEEeeeecCCCceEEEEec-----CcceeeEE
Confidence 344567899999999999999999999999987 466778888 9 89999999999987 566777 89999999
Q ss_pred EeC-Cc----EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE-----------------------
Q psy10778 452 TIN-AQ----LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH----------------------- 503 (556)
Q Consensus 452 di~-g~----~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~----------------------- 503 (556)
|++ ++ ......|...|++++|+ |+| ++|++|+.||.|++||+.+++.
T Consensus 279 d~~~~~~~~~~~~~~~h~~~v~~~~~s--pdg---~~l~s~~~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 353 (435)
T 4e54_B 279 DLRQVRGKASFLYSLPHRHPVNAACFS--PDG---ARLLTTDQKSEIRVYSASQWDCPLGLIPHPHRHFQHLTPIKAAWH 353 (435)
T ss_dssp ETTTCCSSSCCSBCCBCSSCEEECCBC--TTS---SEEEEEESSSCEEEEESSSSSSEEEECCCCCCCCSSSCCCBCEEC
T ss_pred ecccccccceEEEeeeccccccceeEC--CCC---CeeEEEcCCCEEEEEECCCCccceEEecccccccccceeEEEEEc
Confidence 996 32 22233578899999999 899 8999999999999998754321
Q ss_pred -------------------------------------EEEecCCCCCCeEEE-EEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 504 -------------------------------------LLTLNTNVALPVIAV-TYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 504 -------------------------------------~~~~~~~h~~~V~~l-~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
+..+..+|...|.++ +|+|+|++|++|+ |+.|+||++++++
T Consensus 354 ~~~~~~~~~~~~d~~~~~~~~~~~~~i~iwd~~~g~~~~~l~~~~~~~v~s~~~fspdg~~lasg~-d~~i~iW~~~~gk 432 (435)
T 4e54_B 354 PRYNLIVVGRYPDPNFKSCTPYELRTIDVFDGNSGKMMCQLYDPESSGISSLNEFNPMGDTLASAM-GYHILIWSQQEAR 432 (435)
T ss_dssp SSSSCEEEECCCCTTSCCSSTTCCCCEEEECSSSCCEEEEECCSSCCCCCCEEEECTTSSCEEEEC-SSEEEECCCC---
T ss_pred CCCCEEEEEEcCCCCeEEEEecCCCEEEEEECCCCcEEEEEeCCCCCcEEEEEEECCCCCEEEEEc-CCcEEEEECCcCe
Confidence 122222455667776 6999999999876 8899999998865
Q ss_pred C
Q psy10778 546 R 546 (556)
Q Consensus 546 ~ 546 (556)
.
T Consensus 433 ~ 433 (435)
T 4e54_B 433 T 433 (435)
T ss_dssp -
T ss_pred e
Confidence 3
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.5e-27 Score=238.01 Aligned_cols=230 Identities=15% Similarity=0.166 Sum_probs=200.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. .|...|.+++|+|++++|++|+.||.|++|++..... .+....+.+|
T Consensus 31 ~l~s~~~dg~v~vw~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~~~~~~------~~~~~~~~~~ 103 (313)
T 3odt_A 31 KVASVSRDGTVRLWSKDDQWLGTVVY-TGQGFLNSVCYDSEKELLLFGGKDTMINGVPLFATSG------EDPLYTLIGH 103 (313)
T ss_dssp EEEEEETTSEEEEEEESSSEEEEEEE-ECSSCEEEEEEETTTTEEEEEETTSCEEEEETTCCTT------SCC-CEECCC
T ss_pred EEEEEEcCCcEEEEECCCCEEEEEee-cCCccEEEEEECCCCCEEEEecCCCeEEEEEeeecCC------CCcccchhhc
Confidence 78899999999999998876666655 7899999999999999999999999999999875411 1445778999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...|.+++| +++.+++++.||.|++|| .++.+..+.. | ...+.+++++| ++..+++++ .++.|++||.
T Consensus 104 ~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~-~-~~~v~~~~~~~~~~~~l~~~~-----~d~~i~i~d~ 172 (313)
T 3odt_A 104 QGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQA-H-NASVWDAKVVSFSENKFLTAS-----ADKTIKLWQN 172 (313)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEEC-C-SSCEEEEEEEETTTTEEEEEE-----TTSCEEEEET
T ss_pred ccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEeccc-C-CCceeEEEEccCCCCEEEEEE-----CCCCEEEEec
Confidence 999999999 577999999999999999 6678888888 8 89999999998 889999998 8999999994
Q ss_pred CCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 454 NAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 454 ~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
++.+..+. +...+.+++|+ +++ . +++|+.||.|++||+.+++.+..+. +|...|++++|+|++ .|++++
T Consensus 173 -~~~~~~~~~~~~~~i~~~~~~--~~~---~-~~~~~~dg~i~i~d~~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~ 243 (313)
T 3odt_A 173 -DKVIKTFSGIHNDVVRHLAVV--DDG---H-FISCSNDGLIKLVDMHTGDVLRTYE-GHESFVYCIKLLPNG-DIVSCG 243 (313)
T ss_dssp -TEEEEEECSSCSSCEEEEEEE--ETT---E-EEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECTTS-CEEEEE
T ss_pred -CceEEEEeccCcccEEEEEEc--CCC---e-EEEccCCCeEEEEECCchhhhhhhh-cCCceEEEEEEecCC-CEEEEe
Confidence 44444443 78899999999 887 6 9999999999999999999999998 799999999999999 588999
Q ss_pred CCCcEEEEEcCCCCCcCeee
Q psy10778 532 TEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.||.|++||+.+++....+.
T Consensus 244 ~dg~v~iwd~~~~~~~~~~~ 263 (313)
T 3odt_A 244 EDRTVRIWSKENGSLKQVIT 263 (313)
T ss_dssp TTSEEEEECTTTCCEEEEEE
T ss_pred cCCEEEEEECCCCceeEEEe
Confidence 99999999999987665554
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6.6e-28 Score=253.63 Aligned_cols=247 Identities=14% Similarity=0.176 Sum_probs=198.5
Q ss_pred eEEeccCCCeEEEEeCCC---CCCc-ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc---ccCC
Q psy10778 295 MICWNECDNLIRLKMSKE---LPAT-PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE---FCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~---~~~~-~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~---~~~~ 367 (556)
++++|+.||+|++|+..+ +... ......|...|++++|+|++++|++|+.||+|++||+..... +... ....
T Consensus 78 ~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~dg~i~vwd~~~~~~-~~~~~~~~~~~ 156 (437)
T 3gre_A 78 YLITGSDQGVIKIWNLKEIIVGEVYSSSLTYDCSSTVTQITMIPNFDAFAVSSKDGQIIVLKVNHYQQ-ESEVKFLNCEC 156 (437)
T ss_dssp EEEEEETTSEEEEEEHHHHHTTCCCSCSEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEEEEEEEE-TTEEEEEEEEE
T ss_pred EEEEecCCceEEEeECcccccCcccceeeeccCCCCEEEEEEeCCCCEEEEEeCCCEEEEEEeccccC-Cceeeccccce
Confidence 899999999999999875 4322 233336999999999999999999999999999999962200 0000 0011
Q ss_pred CeEee--C--CCccEEEEE--EccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCeEEEEeec
Q psy10778 368 PTILL--G--HSACVTDLY--LCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 368 ~~~l~--~--h~~~V~~l~--~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
+..+. . +...+.++. +++++.++++|+.||.|++||+++++.+..+... | ...|++++|+|++..+++++
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h-~~~v~~~~~s~~~~~l~s~~-- 233 (437)
T 3gre_A 157 IRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPR-HGAVSSICIDEECCVLILGT-- 233 (437)
T ss_dssp EEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGG-GCCEEEEEECTTSCEEEEEE--
T ss_pred eEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCC-CCceEEEEECCCCCEEEEEc--
Confidence 12221 1 566777777 5678999999999999999999999999888752 4 68999999999999999999
Q ss_pred CcCCCCeEEEEEeC-CcEEEEe--ecCCCeEEEEEeeC--CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-----
Q psy10778 441 TKTGGSILRLHTIN-AQLITSL--ASELRITSVTFSNA--PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN----- 510 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~--~~~~~i~~i~~s~~--pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~----- 510 (556)
.|+.|++||++ ++.+..+ .+...|.+++|++. +++ .+|++|+.||.|++||+.+++.+..+...
T Consensus 234 ---~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 307 (437)
T 3gre_A 234 ---TRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGKNS---VIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPS 307 (437)
T ss_dssp ---TTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCTTE---EEEEEESTTEEEEEEETTTTEEEEEEESSSSCCC
T ss_pred ---CCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCCCc---cEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCc
Confidence 89999999998 7777776 45678999988743 456 79999999999999999999988887621
Q ss_pred --------------------CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 511 --------------------VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 511 --------------------h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
|...|++++|+ ++++|++|+.||.|++||+.+++....+..
T Consensus 308 ~~~~~~~~~~l~~~~~~~~~~~~~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~ 368 (437)
T 3gre_A 308 MEHFLPIEKGLEELNFCGIRSLNALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS 368 (437)
T ss_dssp GGGGSCBCSSGGGCCCCCCCSGGGGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred cceecccccccccceecccccCCceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence 55668999999 789999999999999999999877666553
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=254.86 Aligned_cols=241 Identities=12% Similarity=0.167 Sum_probs=201.8
Q ss_pred eEEeccCCCeEEEEeCCC---C-CCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKE---L-PATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~---~-~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+|++|+.||.|++|+..+ + +....+ .+|...|++++|+|+ +++|++|+.||.|++||+................
T Consensus 81 ~l~~~~~dg~v~vw~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~ 159 (416)
T 2pm9_A 81 IIAGALDNGSLELYSTNEANNAINSMARF-SNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPG 159 (416)
T ss_dssp CEEEEESSSCEEEECCSSTTSCCCEEEEC-CCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCC
T ss_pred eEEEEccCCeEEEeecccccccccchhhc-cCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccc
Confidence 889999999999999987 2 233333 379999999999998 8999999999999999998652111000001223
Q ss_pred EeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-----CCCeeEEEEeCCC-CeEEEEeecCc
Q psy10778 370 ILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDP-----NTPVSHVTMSETN-GEIASVLQTTK 442 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~-----~~~V~~l~~sp~~-~~i~s~s~~~~ 442 (556)
.+.+|...|.+++|+|+ +.++++++.||.|++||+++++.+..+.. +. ...|.+++|+|++ ..+++++
T Consensus 160 ~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~l~~~~---- 234 (416)
T 2pm9_A 160 QSMSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSY-TSPNSGIKQQLSVVEWHPKNSTRVATAT---- 234 (416)
T ss_dssp CSCCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECC-CCCSSCCCCCEEEEEECSSCTTEEEEEE----
T ss_pred cccCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEec-cccccccCCceEEEEECCCCCCEEEEEE----
Confidence 45789999999999999 78999999999999999999999888876 42 4679999999997 5778887
Q ss_pred CCCC---eEEEEEeC-C-cEEEEee--cCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCC
Q psy10778 443 TGGS---ILRLHTIN-A-QLITSLA--SELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALP 514 (556)
Q Consensus 443 ~~d~---~I~iwdi~-g-~~i~~~~--~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~ 514 (556)
.++ .|++||++ + ..+..+. |...|.+++|+ | ++ ++|++++.||.|++||+.+++.+..+. +|...
T Consensus 235 -~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s--~~~~---~~l~s~~~dg~v~~wd~~~~~~~~~~~-~~~~~ 307 (416)
T 2pm9_A 235 -GSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWC--HQDE---HLLLSSGRDNTVLLWNPESAEQLSQFP-ARGNW 307 (416)
T ss_dssp -CCSSSCCCCEEETTSTTSCSBCCCSCCSSCEEEEEEC--SSCS---SCEEEEESSSEEEEECSSSCCEEEEEE-CSSSC
T ss_pred -CCCCCceEEEEeCCCCCCCcEEeecCccCceeEEEeC--CCCC---CeEEEEeCCCCEEEeeCCCCccceeec-CCCCc
Confidence 777 99999997 3 5555554 77899999999 7 77 899999999999999999999999998 78999
Q ss_pred eEEEEEecCC-CEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 515 VIAVTYSCDS-QHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 515 V~~l~~s~dg-~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
|++++|+|++ .+|++++.||.|++|++.+.....
T Consensus 308 v~~~~~s~~~~~~l~s~~~d~~i~iw~~~~~~~~~ 342 (416)
T 2pm9_A 308 CFKTKFAPEAPDLFACASFDNKIEVQTLQNLTNTL 342 (416)
T ss_dssp CCCEEECTTCTTEEEECCSSSEEEEEESCCCCCSS
T ss_pred eEEEEECCCCCCEEEEEecCCcEEEEEccCCCCCc
Confidence 9999999999 899999999999999998865443
|
| >4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a | Back alignment and structure |
|---|
Probab=99.96 E-value=1.4e-27 Score=241.25 Aligned_cols=218 Identities=19% Similarity=0.241 Sum_probs=188.4
Q ss_pred ceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC
Q psy10778 317 PVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 317 ~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~ 395 (556)
.+++ +|.+.|++++|+|+ +++|+||+.||+|+|||+...... ...+...+.+|...|.+++|+|++++|++|+.
T Consensus 32 ~tL~-GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~----~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~ 106 (340)
T 4aow_A 32 GTLK-GHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETN----YGIPQRALRGHSHFVSDVVISSDGQFALSGSW 106 (340)
T ss_dssp EEEC-CCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSC----SEEEEEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred EEEC-CccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcc----cceeeEEEeCCCCCEEEEEECCCCCEEEEEcc
Confidence 3454 89999999999997 689999999999999999865211 11245678999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe---ecCCCeEEEEE
Q psy10778 396 DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL---ASELRITSVTF 472 (556)
Q Consensus 396 Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~---~~~~~i~~i~~ 472 (556)
||.|++|+............ + ...+..+.+++++..+++++ .|+.+++||+.+...... .+...+.+++|
T Consensus 107 d~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~s~s-----~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~ 179 (340)
T 4aow_A 107 DGTLRLWDLTTGTTTRRFVG-H-TKDVLSVAFSSDNRQIVSGS-----RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRF 179 (340)
T ss_dssp TSEEEEEETTTTEEEEEEEC-C-SSCEEEEEECTTSSCEEEEE-----TTSCEEEECTTSCEEEEECSSSCSSCEEEEEE
T ss_pred cccceEEeecccceeeeecC-C-CCceeEEEEeecCccceeec-----CCCeEEEEEeCCCceEEEEeccccCcccceEE
Confidence 99999999999888887777 6 78899999999999999999 899999999985443333 35788999999
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
++.+.. .++++++.|+.|++||+.+++.+..+. +|..+|++++|+|++++|++|+.||.|++||+.+.+.+..+
T Consensus 180 ~~~~~~---~~~~s~~~d~~i~i~d~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~ 253 (340)
T 4aow_A 180 SPNSSN---PIIVSCGWDKLVKVWNLANCKLKTNHI-GHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTL 253 (340)
T ss_dssp CSCSSS---CEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred ccCCCC---cEEEEEcCCCEEEEEECCCCceeeEec-CCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeee
Confidence 954444 688999999999999999999999998 89999999999999999999999999999999987665444
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-28 Score=274.57 Aligned_cols=235 Identities=14% Similarity=0.168 Sum_probs=210.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. +|...|++++|+|++++|++|+.||.|++|++.++ +.+..+.+|
T Consensus 27 ~la~~~~~g~v~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~---------~~~~~~~~~ 96 (814)
T 3mkq_A 27 WVLTTLYSGRVEIWNYETQVEVRSIQ-VTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTG---------EKVVDFEAH 96 (814)
T ss_dssp EEEEEETTSEEEEEETTTTEEEEEEE-CCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EEEEEeCCCEEEEEECCCCceEEEEe-cCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCC---------cEEEEEecC
Confidence 88899999999999999887777776 79999999999999999999999999999999876 556788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.+.|++++|+|+++.|++++.||+|++||+.++ .....+.. | ...|.+++|+| ++..+++++ .++.|++||
T Consensus 97 ~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~-~-~~~v~~~~~~p~~~~~l~~~~-----~dg~v~vwd 169 (814)
T 3mkq_A 97 PDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEG-H-EHFVMCVAFNPKDPSTFASGC-----LDRTVKVWS 169 (814)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEEC-C-SSCEEEEEEETTEEEEEEEEE-----TTSEEEEEE
T ss_pred CCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcC-C-CCcEEEEEEEcCCCCEEEEEe-----CCCeEEEEE
Confidence 999999999999999999999999999999987 66778888 8 89999999999 788999998 899999999
Q ss_pred eC-CcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 453 IN-AQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~-g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
++ +.....+. +...+.+++|++.+++ .+|++|+.||.|++||+.+++.+..+. +|...|++++|+|++.++++
T Consensus 170 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~---~~l~~~~~dg~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~~ 245 (814)
T 3mkq_A 170 LGQSTPNFTLTTGQERGVNYVDYYPLPDK---PYMITASDDLTIKIWDYQTKSCVATLE-GHMSNVSFAVFHPTLPIIIS 245 (814)
T ss_dssp TTCSSCSEEEECCCTTCCCEEEECCSTTC---CEEEEECTTSEEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSEEEE
T ss_pred CCCCcceeEEecCCCCCEEEEEEEECCCC---CEEEEEeCCCEEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEE
Confidence 96 44444443 3488999999944488 899999999999999999999999998 78999999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
++.||.|++||+.+++....+
T Consensus 246 ~~~dg~v~vwd~~~~~~~~~~ 266 (814)
T 3mkq_A 246 GSEDGTLKIWNSSTYKVEKTL 266 (814)
T ss_dssp EETTSCEEEEETTTCSEEEEE
T ss_pred EeCCCeEEEEECCCCcEEEEe
Confidence 999999999999986655443
|
| >3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-27 Score=247.03 Aligned_cols=223 Identities=15% Similarity=0.137 Sum_probs=184.3
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcC--CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRP--PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~--~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.++++|+.|+.|++|++.+.. ...+.. .|...|.+++|+|++++|++|+.||.|++||+. + +.+..+
T Consensus 132 ~~l~s~~~d~~i~iwd~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~---------~~~~~~ 200 (383)
T 3ei3_B 132 NQLFVSSIRGATTLRDFSGSV-IQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-G---------HEIFKE 200 (383)
T ss_dssp EEEEEEETTTEEEEEETTSCE-EEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-S---------CEEEEE
T ss_pred CEEEEEeCCCEEEEEECCCCc-eEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-C---------CEEEEe
Confidence 489999999999999998643 333331 345889999999999999999999999999984 2 456788
Q ss_pred eCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCC----CeEEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCC
Q psy10778 372 LGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINT----IGYIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGG 445 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~----~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d 445 (556)
.+|...|.+++|+|+++ ++++|+.||+|++||+++ +..+..+ . | ...|.+++|+| ++..|++++ .|
T Consensus 201 ~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~-~-~-~~~v~~~~~s~~~~~~l~~~~-----~d 272 (383)
T 3ei3_B 201 KLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEM-P-H-EKPVNAAYFNPTDSTKLLTTD-----QR 272 (383)
T ss_dssp ECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEE-E-C-SSCEEEEEECTTTSCEEEEEE-----SS
T ss_pred ccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEe-c-C-CCceEEEEEcCCCCCEEEEEc-----CC
Confidence 99999999999999999 999999999999999997 6677777 4 6 89999999999 999999999 89
Q ss_pred CeEEEEEeC-CcEEEEee-c-----------------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 446 SILRLHTIN-AQLITSLA-S-----------------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~~-~-----------------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
+.|++||++ ++.+..+. + ...+..++++ |++ ++ +|+.||.|++||+.+++.+..
T Consensus 273 ~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~s--~dg---~~--s~s~d~~i~iwd~~~~~~~~~ 345 (383)
T 3ei3_B 273 NEIRVYSSYDWSKPDQIIIHPHRQFQHLTPIKATWHPMYDLIVAGRY--PDD---QL--LLNDKRTIDIYDANSGGLVHQ 345 (383)
T ss_dssp SEEEEEETTBTTSCSEEEECCBCCCTTSCCCCCEECSSSSEEEEECB--CCT---TT--CTTCCCCEEEEETTTCCEEEE
T ss_pred CcEEEEECCCCccccccccccccccccccceEEeccCCCCceEEEec--CCc---cc--ccCCCCeEEEEecCCCceeee
Confidence 999999997 44333322 1 1334446666 666 44 777899999999999999999
Q ss_pred ecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 507 LNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 507 ~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+.. .|...+..++|+|++++|++|+ ||.|++||+++
T Consensus 346 l~~~~~~~~~~~~~~s~~g~~l~s~s-d~~i~iw~~~~ 382 (383)
T 3ei3_B 346 LRDPNAAGIISLNKFSPTGDVLASGM-GFNILIWNRED 382 (383)
T ss_dssp ECBTTBCSCCCEEEECTTSSEEEEEE-TTEEEEEECC-
T ss_pred ecCCCCCceEEEEEEecCccEEEEec-CCcEEEEecCC
Confidence 973 2467788889999999999997 99999999975
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.96 E-value=1.6e-27 Score=251.21 Aligned_cols=235 Identities=12% Similarity=0.195 Sum_probs=198.7
Q ss_pred ceEEeccCCCeEEEEeCCC----------CCCcceEcCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 294 GMICWNECDNLIRLKMSKE----------LPATPVIRPPLGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~----------~~~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
.++++|+.||.|++|++.. ......+. +|...|++++|+|++. +|++|+.||+|++|++.........
T Consensus 142 ~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 220 (430)
T 2xyi_A 142 CVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLR-GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRV 220 (430)
T ss_dssp EEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEE-CCSSCCCCEEECTTSTTEEEEECTTSCEEEEETTSCCBGGGE
T ss_pred cEEEEECCCCcEEEEECCCcccccCccccCCCcEEec-CCCCCeEEEEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCce
Confidence 3899999999999999976 34444444 7999999999999988 9999999999999999864211111
Q ss_pred cccCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCC-eEEEE
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNG-EIASV 437 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~ 437 (556)
......+.+|...|.+++|+| ++.++++++.||.|++||++++ +.+..+.. | ...|++++|+|++. .++++
T Consensus 221 --~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~-~-~~~v~~i~~~p~~~~~l~tg 296 (430)
T 2xyi_A 221 --IDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDA-H-TAEVNCLSFNPYSEFILATG 296 (430)
T ss_dssp --EECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEEC-C-SSCEEEEEECSSCTTEEEEE
T ss_pred --eccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeec-C-CCCeEEEEeCCCCCCEEEEE
Confidence 134567889999999999999 6789999999999999999987 56777777 8 89999999999987 57788
Q ss_pred eecCcCCCCeEEEEEeC--CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC--------------
Q psy10778 438 LQTTKTGGSILRLHTIN--AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------------- 500 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~--g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------------- 500 (556)
+ .++.|++||++ +..+..+. |...|.+++|+ |++. .+|++++.||.|++||+..
T Consensus 297 ~-----~dg~v~vwd~~~~~~~~~~~~~h~~~v~~i~~s--p~~~--~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~ 367 (430)
T 2xyi_A 297 S-----ADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS--PHNE--TILASSGTDRRLHVWDLSKIGEEQSTEDAEDGP 367 (430)
T ss_dssp E-----TTSEEEEEETTCTTSCSEEEECCSSCEEEEEEC--SSCT--TEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCC
T ss_pred e-----CCCeEEEEeCCCCCCCeEEeecCCCCEEEEEEC--CCCC--CEEEEEeCCCcEEEEeCCCCccccCccccccCC
Confidence 7 89999999997 45566664 78899999999 7763 4799999999999999976
Q ss_pred CeEEEEecCCCCCCeEEEEEecCCC-EEEEEcCCCcEEEEEcCC
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCDSQ-HLYASNTEGLVIIWESSS 543 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs~Dg~V~vwdl~~ 543 (556)
.+.+..+. +|...|++++|+|++. +|++++.||.|++|++.+
T Consensus 368 ~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~s~dg~i~iw~~~~ 410 (430)
T 2xyi_A 368 PELLFIHG-GHTAKISDFSWNPNEPWIICSVSEDNIMQVWQMAE 410 (430)
T ss_dssp TTEEEECC-CCSSCEEEEEECSSSTTEEEEEETTSEEEEEEECH
T ss_pred cceEEEcC-CCCCCceEEEECCCCCCEEEEEECCCCEEEeEccc
Confidence 35667776 7899999999999998 999999999999999976
|
| >2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.9e-28 Score=255.08 Aligned_cols=241 Identities=15% Similarity=0.249 Sum_probs=199.6
Q ss_pred eEEec----------cCCCeEEEEeCCCCCCc-ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc
Q psy10778 295 MICWN----------ECDNLIRLKMSKELPAT-PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~g----------s~Dg~I~lw~~~~~~~~-~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~ 363 (556)
++++| +.|+.|++|+..++... ......|...|++++|+|++++|++|+.||.|++|++.......
T Consensus 27 ~l~~g~~~g~~~~~~~~d~~v~iw~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~v~vw~~~~~~~~~--- 103 (416)
T 2pm9_A 27 LLVSGTVSGTVDANFSTDSSLELWSLLAADSEKPIASLQVDSKFNDLDWSHNNKIIAGALDNGSLELYSTNEANNAI--- 103 (416)
T ss_dssp EEEEBCBSSCCCSSCCCCCCCEEEESSSGGGCSCSCCCCCSSCEEEEEECSSSSCEEEEESSSCEEEECCSSTTSCC---
T ss_pred EEEEEecCcccccccCCCCeEEEEEccCCCCCcEEEEEecCCceEEEEECCCCCeEEEEccCCeEEEeecccccccc---
Confidence 67777 89999999999876422 22223688999999999999999999999999999998621111
Q ss_pred ccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCe------EEEE---eCCCCCCCCeeEEEEeCC-CC
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIG------YIRE---IPCVDPNTPVSHVTMSET-NG 432 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~------~v~~---l~~~h~~~~V~~l~~sp~-~~ 432 (556)
+.+..+.+|...|++++|+|+ +.++++++.||.|++||+.+++ .... ... | ...|.+++|+|+ +.
T Consensus 104 --~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~ 179 (416)
T 2pm9_A 104 --NSMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMS-S-VDEVISLAWNQSLAH 179 (416)
T ss_dssp --CEEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCC-S-SCCCCEEEECSSCTT
T ss_pred --cchhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccC-C-CCCeeEEEeCCCCCc
Confidence 345778899999999999998 8899999999999999999876 3332 355 7 789999999999 67
Q ss_pred eEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-------CCCeEEEEEeeCCCCCcceEEEEEeCCC---eEEEEeCCCC
Q psy10778 433 EIASVLQTTKTGGSILRLHTIN-AQLITSLAS-------ELRITSVTFSNAPEGVSQNVIVTGHSDG---TIQLWSGYKL 501 (556)
Q Consensus 433 ~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~-------~~~i~~i~~s~~pdg~~~~~l~tg~~dg---~I~iwd~~~~ 501 (556)
.+++++ .++.|++||++ ++.+..+.. ...+.+++|+ |++. .++++++.|+ .|++||++++
T Consensus 180 ~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~--~~l~~~~~d~~~~~i~~~d~~~~ 250 (416)
T 2pm9_A 180 VFASAG-----SSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWH--PKNS--TRVATATGSDNDPSILIWDLRNA 250 (416)
T ss_dssp EEEEES-----SSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEEC--SSCT--TEEEEEECCSSSCCCCEEETTST
T ss_pred EEEEEc-----CCCCEEEEECCCCCcceEEeccccccccCCceEEEEEC--CCCC--CEEEEEECCCCCceEEEEeCCCC
Confidence 888888 89999999998 677777653 6789999999 7752 5899999998 9999999986
Q ss_pred -eEEEEecCCCCCCeEEEEEec-CCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 502 -AHLLTLNTNVALPVIAVTYSC-DSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 502 -~~~~~~~~~h~~~V~~l~~s~-dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+.+..+..+|...|++++|+| ++++|++++.||.|++||+.+++.+..+.
T Consensus 251 ~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~ 302 (416)
T 2pm9_A 251 NTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFP 302 (416)
T ss_dssp TSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEE
T ss_pred CCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeec
Confidence 455555325889999999999 99999999999999999999877665554
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-27 Score=244.80 Aligned_cols=233 Identities=14% Similarity=0.179 Sum_probs=193.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc------------CCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR------------PPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNK 361 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~------------~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~ 361 (556)
++++|+.||.|++|+..++....... .+|...|++++|+| ++.+|++|+.||.|++||+..+
T Consensus 58 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~----- 132 (408)
T 4a11_B 58 YMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTL----- 132 (408)
T ss_dssp EEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEEEEETTSEEEEEETTTT-----
T ss_pred EEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCC-----
Confidence 88999999999999999876665543 25999999999999 7889999999999999998865
Q ss_pred ccccCCCeEeeCCCccEEEEEEccCC---CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe-EEEE
Q psy10778 362 IEFCKPPTILLGHSACVTDLYLCAGF---SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE-IASV 437 (556)
Q Consensus 362 ~~~~~~~~~l~~h~~~V~~l~~s~~~---~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~-i~s~ 437 (556)
+....+ .+...+.++.+++.+ .++++++.||.|++||+++++.+..+.. | ...|.+++|+|++.. ++++
T Consensus 133 ----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~ll~~~ 205 (408)
T 4a11_B 133 ----QTADVF-NFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQG-H-RQEILAVSWSPRYDYILATA 205 (408)
T ss_dssp ----EEEEEE-ECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECC-C-CSCEEEEEECSSCTTEEEEE
T ss_pred ----ccceec-cCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecC-C-CCcEEEEEECCCCCcEEEEE
Confidence 223333 378889999999854 4999999999999999999999999998 8 899999999999985 7788
Q ss_pred eecCcCCCCeEEEEEeC-Cc-EEEEe----------------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC
Q psy10778 438 LQTTKTGGSILRLHTIN-AQ-LITSL----------------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~-~i~~~----------------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~ 499 (556)
+ .++.|++||++ +. .+..+ .+...|.+++|+ |++ ++|++++.||.|++||+.
T Consensus 206 ~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~~~dg~i~vwd~~ 275 (408)
T 4a11_B 206 S-----ADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFT--SDG---LHLLTVGTDNRMRLWNSS 275 (408)
T ss_dssp E-----TTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETT
T ss_pred c-----CCCcEEEEECCCCCcccccccccccccceeeccccccccCceeEEEEc--CCC---CEEEEecCCCeEEEEECC
Confidence 8 89999999996 22 33332 356789999999 888 899999999999999986
Q ss_pred CC-----------------------------------------------eEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 500 KL-----------------------------------------------AHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 500 ~~-----------------------------------------------~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
++ +.+..+. +|...|++++|+|++++|++|+.
T Consensus 276 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~s~~~ 354 (408)
T 4a11_B 276 NGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYGSTIAVYTVYSGEQITMLK-GHYKTVDCCVFQSNFQELYSGSR 354 (408)
T ss_dssp TCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEETTEEEEEETTTCCEEEEEC-CCSSCEEEEEEETTTTEEEEEET
T ss_pred CCccceeccccccccccccceeEEecCCCceEEEEecCCEEEEEECcCCcceeeec-cCCCeEEEEEEcCCCCEEEEECC
Confidence 53 4455565 78999999999999999999999
Q ss_pred CCcEEEEEcCCCCCcCee
Q psy10778 533 EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~ 550 (556)
||.|++|++.+.+.++..
T Consensus 355 dg~i~iw~~~~~~~~~~~ 372 (408)
T 4a11_B 355 DCNILAWVPSLYEPVPDD 372 (408)
T ss_dssp TSCEEEEEECC-------
T ss_pred CCeEEEEeCCCCCccCCC
Confidence 999999999997766543
|
| >1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C | Back alignment and structure |
|---|
Probab=99.96 E-value=4.9e-27 Score=240.36 Aligned_cols=233 Identities=17% Similarity=0.109 Sum_probs=195.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++|+.||.|++|++.+++...... ..|...|++++|+|++++|++|+.||.|++|++....... .......+
T Consensus 66 ~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~-----~~~~~~~~ 140 (372)
T 1k8k_C 66 RIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWW-----VCKHIKKP 140 (372)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEE-----EEEEECTT
T ss_pred EEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcce-----eeeeeecc
Confidence 88999999999999998876544443 3688999999999999999999999999999998752100 01123367
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeC------------------CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDI------------------NTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl------------------~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
|...|++++|+|+++++++|+.||.|++||+ ..++.+..+.. | ...|.+++|+|++..|+
T Consensus 141 ~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~ 218 (372)
T 1k8k_C 141 IRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSS-S-CGWVHGVCFSANGSRVA 218 (372)
T ss_dssp CCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCC-C-SSCEEEEEECSSSSEEE
T ss_pred cCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCC-C-CCeEEEEEECCCCCEEE
Confidence 8999999999999999999999999999995 46788889988 8 89999999999999999
Q ss_pred EEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC--CeE--E-----
Q psy10778 436 SVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK--LAH--L----- 504 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~--~~~--~----- 504 (556)
+++ .|+.|++||++ ++.+..+. +...+.+++|+ |++ .++++| .||.|++|++.+ ++. +
T Consensus 219 ~~~-----~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~-~d~~i~i~~~~~~~~~~~~~~~~~~ 287 (372)
T 1k8k_C 219 WVS-----HDSTVCLADADKKMAVATLASETLPLLAVTFI--TES---SLVAAG-HDCFPVLFTYDSAAGKLSFGGRLDV 287 (372)
T ss_dssp EEE-----TTTEEEEEEGGGTTEEEEEECSSCCEEEEEEE--ETT---EEEEEE-TTSSCEEEEEETTTTEEEECCCCCC
T ss_pred EEe-----CCCEEEEEECCCCceeEEEccCCCCeEEEEEe--cCC---CEEEEE-eCCeEEEEEccCcCceEEEeeccCc
Confidence 999 89999999997 78887775 56799999999 888 788877 899999999977 421 0
Q ss_pred -------------------------------EEecCCCCCCeEEEEEe-cCC---CEEEEEcCCCcEEEEEcCCCC
Q psy10778 505 -------------------------------LTLNTNVALPVIAVTYS-CDS---QHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 505 -------------------------------~~~~~~h~~~V~~l~~s-~dg---~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
..+..+|..+|++++|. ++| .+|++|+.||.|++|++.+.+
T Consensus 288 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~g~~~~~l~s~~~Dg~i~~W~~~~~~ 363 (372)
T 1k8k_C 288 PKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLE 363 (372)
T ss_dssp C--------CHHHHHHHCCCCC---------CCCSSSSSSCEEEEEEEESTTTSCSEEEEEETTSEEEEEEHHHHH
T ss_pred cccchhhhcchhhhhhhcccccccccCccccccccccccCCcceeEEecCCCcceeeEEEecCCCceEEEEecChh
Confidence 22223789999999966 666 999999999999999997743
|
| >3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-28 Score=249.97 Aligned_cols=230 Identities=16% Similarity=0.205 Sum_probs=196.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC----CCCCceEEEEEcCC----CCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP----PLGATIATATTAPD----CHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~----~h~~~V~~i~~s~d----g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
+++.++.++.|++|+..+++....+.. .|...|++++|+|+ +++|++|+.||.|++||+..+ +
T Consensus 36 ~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg~i~v~d~~~~---------~ 106 (366)
T 3k26_A 36 LVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPITM---------Q 106 (366)
T ss_dssp EEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTCEEEEECTTTC---------C
T ss_pred eEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCCEEEEEEchhc---------e
Confidence 555666677999999987665544431 36788999999998 679999999999999998865 5
Q ss_pred CCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEe---CCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 367 PPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREI---PCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l---~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.+..+.+|...|++++|+| ++.++++|+.||.|++||+++++.+..+ .. | ...|.+++|+|++..+++++
T Consensus 107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~~~~---- 180 (366)
T 3k26_A 107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEG-H-RDEVLSADYDLLGEKIMSCG---- 180 (366)
T ss_dssp EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTS-C-SSCEEEEEECTTSSEEEEEE----
T ss_pred EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEeccccc-c-cCceeEEEECCCCCEEEEec----
Confidence 5678889999999999999 8999999999999999999999999888 66 7 89999999999999999999
Q ss_pred CCCCeEEEEEeC-CcEEEEe-----------------------------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCe
Q psy10778 443 TGGSILRLHTIN-AQLITSL-----------------------------ASELRITSVTFSNAPEGVSQNVIVTGHSDGT 492 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~-----------------------------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~ 492 (556)
.|+.|++||++ ++.+..+ .+...|.+++|+ + +++++++.||.
T Consensus 181 -~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~----~---~~l~~~~~d~~ 252 (366)
T 3k26_A 181 -MDHSLKLWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL----G---DLILSKSCENA 252 (366)
T ss_dssp -TTSCEEEEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE----T---TEEEEECSSSE
T ss_pred -CCCCEEEEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc----C---CEEEEEecCCE
Confidence 89999999997 3322111 167899999998 4 68999999999
Q ss_pred EEEEeCCCCe--------------EEEEecCCCCCCeEEEEEecC--CCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 493 IQLWSGYKLA--------------HLLTLNTNVALPVIAVTYSCD--SQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 493 I~iwd~~~~~--------------~~~~~~~~h~~~V~~l~~s~d--g~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
|++||+.+++ .+..+. .|...|++++|+|+ +++|++|+.||.|++||+.+++...
T Consensus 253 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 323 (366)
T 3k26_A 253 IVCWKPGKMEDDIDKIKPSESNVTILGRFD-YSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVEDPHK 323 (366)
T ss_dssp EEEEEESSTTCCGGGCCTTCCCEEEEEEEE-CSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSSGGG
T ss_pred EEEEeCCCccccccccccCCcchheecccc-ccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCCCcc
Confidence 9999987764 367776 78899999999999 9999999999999999999876443
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=243.39 Aligned_cols=228 Identities=12% Similarity=0.156 Sum_probs=194.8
Q ss_pred eEEeccCCCeEEEEeCCCCC----CcceEcCCCCCceEEEEEcCCCC-EEEEEeCCCcEEEEEe-eeccCcccccccCCC
Q psy10778 295 MICWNECDNLIRLKMSKELP----ATPVIRPPLGATIATATTAPDCH-TLWLGLTSGNILVYEY-ELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~----~~~~~~~~h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~-~~~~~~~~~~~~~~~ 368 (556)
++++|+.||.|++|+..++. .... ..|...|++++|+|+++ +|++|+.||.|++|++ ..+ ..
T Consensus 25 ~l~~~~~d~~v~iw~~~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~~wd~~~~~----------~~ 92 (342)
T 1yfq_A 25 LLLITSWDGSLTVYKFDIQAKNVDLLQS--LRYKHPLLCCNFIDNTDLQIYVGTVQGEILKVDLIGSP----------SF 92 (342)
T ss_dssp EEEEEETTSEEEEEEEETTTTEEEEEEE--EECSSCEEEEEEEESSSEEEEEEETTSCEEEECSSSSS----------SE
T ss_pred EEEEEcCCCeEEEEEeCCCCccccceee--eecCCceEEEEECCCCCcEEEEEcCCCeEEEEEeccCC----------ce
Confidence 78889999999999998776 3222 27999999999999999 9999999999999998 654 23
Q ss_pred eEeeC--CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC---------CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEE
Q psy10778 369 TILLG--HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT---------IGYIREIPCVDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 369 ~~l~~--h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~---------~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
..+.+ |...|.+++|+| ++.+++++.||.|++||+++ ++.+..+. | ...|.+++|++++ ++++
T Consensus 93 ~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~--~-~~~v~~~~~~~~~--l~~~ 166 (342)
T 1yfq_A 93 QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK--V-KNKIFTMDTNSSR--LIVG 166 (342)
T ss_dssp EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS--S-CCCEEEEEECSSE--EEEE
T ss_pred EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe--e-CCceEEEEecCCc--EEEE
Confidence 66778 999999999999 99999999999999999987 66666665 4 7899999999887 8888
Q ss_pred eecCcCCCCeEEEEEeCC---c--EEEEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCC------eEEE
Q psy10778 438 LQTTKTGGSILRLHTINA---Q--LITSLASELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKL------AHLL 505 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~g---~--~i~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~------~~~~ 505 (556)
+ .++.|++||++. . ......+...+.+++|+ | ++ +++++|+.||.|++|++... +...
T Consensus 167 ~-----~d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~--~~~~---~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~ 236 (342)
T 1yfq_A 167 M-----NNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALL--PKEQ---EGYACSSIDGRVAVEFFDDQGDDYNSSKRF 236 (342)
T ss_dssp E-----STTEEEEEESSCCTTCCCEEEECSCSSCEEEEEEC--SGGG---CEEEEEETTSEEEEEECCTTCCSTTCTTCE
T ss_pred e-----CCCeEEEEECCccccccceeeecCCCCceeEEEEC--CCCC---CEEEEEecCCcEEEEEEcCCCcccccccce
Confidence 8 899999999975 2 22333567899999999 8 88 89999999999999999876 6777
Q ss_pred EecCCCCC---------CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 506 TLNTNVAL---------PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 506 ~~~~~h~~---------~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+. .|.. .|++++|+|++++|++++.||.|++||+.+++.+..+.
T Consensus 237 ~~~-~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~ 290 (342)
T 1yfq_A 237 AFR-CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp EEE-CCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred eee-cccccccccccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhh
Confidence 776 5544 99999999999999999999999999999877665554
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-28 Score=252.90 Aligned_cols=237 Identities=10% Similarity=0.138 Sum_probs=188.6
Q ss_pred eEEeccCCCeEEEEeCCCCC-----------CcceEcCCCC------------CceEEEEEcCCC--CEEEEEeCCCcEE
Q psy10778 295 MICWNECDNLIRLKMSKELP-----------ATPVIRPPLG------------ATIATATTAPDC--HTLWLGLTSGNIL 349 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-----------~~~~~~~~h~------------~~V~~i~~s~dg--~~l~tgs~Dg~I~ 349 (556)
+|++|+.||.|++|+..+++ ....+. +|. +.|++++|+|++ ..|++|+.||+|+
T Consensus 42 ~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~-~h~~~~~~~~~~~~~~~V~~l~~~~~~~~~~l~s~s~d~~i~ 120 (447)
T 3dw8_B 42 LLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQ-SHEPEFDYLKSLEIEEKINKIRWLPQKNAAQFLLSTNDKTIK 120 (447)
T ss_dssp EEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEE-CCCCEEEGGGTEEECCCCCEEEECCCCSSSEEEEEECSSCEE
T ss_pred EEEEEcCCCeEEEEEecCCCCCCcccccceeEecccc-cccccccccccccccCceEEEEEcCCCCcceEEEeCCCCeEE
Confidence 89999999999999998765 234444 787 889999999998 7999999999999
Q ss_pred EEEeeeccCcccccc------------------------------cCCCeE-eeCCCccEEEEEEccCCCEEEEEcCCCc
Q psy10778 350 VYEYELNASTNKIEF------------------------------CKPPTI-LLGHSACVTDLYLCAGFSVAVSSSEDGT 398 (556)
Q Consensus 350 vwd~~~~~~~~~~~~------------------------------~~~~~~-l~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 398 (556)
+|++..+........ ..+... ..+|...|++++|+|++++|++| .||.
T Consensus 121 iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~-~d~~ 199 (447)
T 3dw8_B 121 LWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSDYETYLSA-DDLR 199 (447)
T ss_dssp EEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTTSSEEEEE-CSSE
T ss_pred EEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCCCCEEEEe-CCCe
Confidence 999986421100000 000112 36899999999999999999999 7999
Q ss_pred EEEEeCCC-CeEEEE-------eCCCCCCCCeeEEEEeCCC-CeEEEEeecCcCCCCeEEEEEeC-CcE----EEEeec-
Q psy10778 399 CLLWDINT-IGYIRE-------IPCVDPNTPVSHVTMSETN-GEIASVLQTTKTGGSILRLHTIN-AQL----ITSLAS- 463 (556)
Q Consensus 399 I~iwdl~~-~~~v~~-------l~~~h~~~~V~~l~~sp~~-~~i~s~s~~~~~~d~~I~iwdi~-g~~----i~~~~~- 463 (556)
|++||+++ ++.+.. +.. | ...|.+++|+|++ ..|++++ .|+.|++||++ ++. +..+..
T Consensus 200 i~iwd~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~p~~~~~l~s~~-----~dg~i~iwd~~~~~~~~~~~~~~~~~ 272 (447)
T 3dw8_B 200 INLWHLEITDRSFNIVDIKPANMEE-L-TEVITAAEFHPNSCNTFVYSS-----SKGTIRLCDMRASALCDRHSKLFEEP 272 (447)
T ss_dssp EEEEETTEEEEEEEEEECCCSSGGG-C-CCCEEEEEECSSCTTEEEEEE-----TTSCEEEEETTTCSSSCTTCEEECCC
T ss_pred EEEEECCCCCceeeeeecccccccc-c-CcceEEEEECCCCCcEEEEEe-----CCCeEEEEECcCCccccceeeEeccC
Confidence 99999994 444442 446 7 8899999999998 8999999 89999999997 443 455543
Q ss_pred CC------------CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCC---------------e
Q psy10778 464 EL------------RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LAHLLTLNTNVALP---------------V 515 (556)
Q Consensus 464 ~~------------~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~h~~~---------------V 515 (556)
.. .|.+++|+ |+| ++|++++. |.|++||+.+ ++++..+. +|... +
T Consensus 273 ~~~~~~~~~~~~~~~v~~~~~s--~~g---~~l~~~~~-~~v~iwd~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~i~~~ 345 (447)
T 3dw8_B 273 EDPSNRSFFSEIISSISDVKFS--HSG---RYMMTRDY-LSVKVWDLNMENRPVETYQ-VHEYLRSKLCSLYENDCIFDK 345 (447)
T ss_dssp -----CCHHHHHTTCEEEEEEC--TTS---SEEEEEES-SEEEEEETTCCSSCSCCEE-SCGGGTTTHHHHHHTSGGGCC
T ss_pred CCccccccccccCceEEEEEEC--CCC---CEEEEeeC-CeEEEEeCCCCccccceee-ccccccccccccccccccccc
Confidence 32 89999999 899 89999998 9999999987 88777777 55421 3
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 516 IAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
..++|+|++++|++|+.||.|++||+.+++.+
T Consensus 346 ~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~ 377 (447)
T 3dw8_B 346 FECCWNGSDSVVMTGSYNNFFRMFDRNTKRDI 377 (447)
T ss_dssp CCEEECTTSSEEEEECSTTEEEEEETTTCCEE
T ss_pred eEEEECCCCCEEEEeccCCEEEEEEcCCCcce
Confidence 34999999999999999999999999986653
|
| >3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=6e-26 Score=226.25 Aligned_cols=225 Identities=15% Similarity=0.208 Sum_probs=192.6
Q ss_pred ceEEeccCCCeEEEEeCCCC---CCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNECDNLIRLKMSKEL---PATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~---~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.++++|+.||.|++|++... +....+. +|...|.+++| +++.+++|+.||.|++|| .. +....
T Consensus 72 ~~l~~~~~dg~i~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~---------~~~~~ 137 (313)
T 3odt_A 72 ELLLFGGKDTMINGVPLFATSGEDPLYTLI-GHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EG---------SLVYN 137 (313)
T ss_dssp TEEEEEETTSCEEEEETTCCTTSCC-CEEC-CCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TT---------EEEEE
T ss_pred CEEEEecCCCeEEEEEeeecCCCCcccchh-hcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CC---------cEEEe
Confidence 38999999999999998754 3344443 79999999999 578999999999999999 22 34577
Q ss_pred eeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 LLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+..|...|.++++++ ++..+++++.||.|++|| .++.+..+...| ...+.+++++|++. +++++ .++.|+
T Consensus 138 ~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~-~~~i~~~~~~~~~~-~~~~~-----~dg~i~ 208 (313)
T 3odt_A 138 LQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIH-NDVVRHLAVVDDGH-FISCS-----NDGLIK 208 (313)
T ss_dssp EECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSC-SSCEEEEEEEETTE-EEEEE-----TTSEEE
T ss_pred cccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccC-cccEEEEEEcCCCe-EEEcc-----CCCeEE
Confidence 889999999999998 899999999999999999 345666665435 78999999999988 88888 899999
Q ss_pred EEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 450 LHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 450 iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
+||++ ++.+..+. +...|.+++|+ |++ .|++|+.||.|++||+.+++.+..+. .|...|++++|+|+++ +
T Consensus 209 i~d~~~~~~~~~~~~~~~~i~~~~~~--~~~----~l~~~~~dg~v~iwd~~~~~~~~~~~-~~~~~i~~~~~~~~~~-~ 280 (313)
T 3odt_A 209 LVDMHTGDVLRTYEGHESFVYCIKLL--PNG----DIVSCGEDRTVRIWSKENGSLKQVIT-LPAISIWSVDCMSNGD-I 280 (313)
T ss_dssp EEETTTCCEEEEEECCSSCEEEEEEC--TTS----CEEEEETTSEEEEECTTTCCEEEEEE-CSSSCEEEEEECTTSC-E
T ss_pred EEECCchhhhhhhhcCCceEEEEEEe--cCC----CEEEEecCCEEEEEECCCCceeEEEe-ccCceEEEEEEccCCC-E
Confidence 99998 78887775 78899999999 887 48899999999999999999999998 7888999999999998 6
Q ss_pred EEEcCCCcEEEEEcCCCCCcCe
Q psy10778 528 YASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
++++.||.|++|++++++....
T Consensus 281 ~~~~~dg~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 281 IVGSSDNLVRIFSQEKSRWASE 302 (313)
T ss_dssp EEEETTSCEEEEESCGGGCCC-
T ss_pred EEEeCCCcEEEEeCCCCceeeh
Confidence 6789999999999998665543
|
| >3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.9e-28 Score=245.99 Aligned_cols=207 Identities=16% Similarity=0.142 Sum_probs=170.7
Q ss_pred cCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--CCCEEEEEcCCC
Q psy10778 320 RPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSEDG 397 (556)
Q Consensus 320 ~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~Dg 397 (556)
..+|.+.|++++|+|+|++||+|+.|++|++||+..+. ...+..+.+|.+.|++++|++ ++++|++|+.|+
T Consensus 9 ~~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~-------~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~ 81 (316)
T 3bg1_A 9 DTSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGG-------QILIADLRGHEGPVWQVAWAHPMYGNILASCSYDR 81 (316)
T ss_dssp -----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTE-------EEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTS
T ss_pred cccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCC-------cEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCC
Confidence 34899999999999999999999999999999997541 023467899999999999986 488999999999
Q ss_pred cEEEEeCCCC--eEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeCCc-EE---EEe-ecCCCeE
Q psy10778 398 TCLLWDINTI--GYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTINAQ-LI---TSL-ASELRIT 468 (556)
Q Consensus 398 ~I~iwdl~~~--~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~g~-~i---~~~-~~~~~i~ 468 (556)
+|++||++++ +.+..+.+ | ...|.+++|+|+ +..|++++ .|+.|++||++.. .. ..+ .|...+.
T Consensus 82 ~v~iWd~~~~~~~~~~~~~~-h-~~~V~~v~~~p~~~g~~lasgs-----~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~ 154 (316)
T 3bg1_A 82 KVIIWREENGTWEKSHEHAG-H-DSSVNSVCWAPHDYGLILACGS-----SDGAISLLTYTGEGQWEVKKINNAHTIGCN 154 (316)
T ss_dssp CEEEECCSSSCCCEEEEECC-C-SSCCCEEEECCTTTCSCEEEEC-----SSSCEEEEEECSSSCEEECCBTTSSSSCBC
T ss_pred EEEEEECCCCcceEEEEccC-C-CCceEEEEECCCCCCcEEEEEc-----CCCCEEEEecCCCCCcceeeeeccccCCcc
Confidence 9999999987 45677888 8 899999999998 77899998 8999999999732 21 122 3567899
Q ss_pred EEEEeeCCCCC--------------cceEEEEEeCCCeEEEEeCCCC---eEEEEecCCCCCCeEEEEEecCC----CEE
Q psy10778 469 SVTFSNAPEGV--------------SQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTNVALPVIAVTYSCDS----QHL 527 (556)
Q Consensus 469 ~i~~s~~pdg~--------------~~~~l~tg~~dg~I~iwd~~~~---~~~~~~~~~h~~~V~~l~~s~dg----~~l 527 (556)
+++|+ |++. ..++|++|+.|+.|++||+... +.+..+. +|...|++++|+|++ .+|
T Consensus 155 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~-~h~~~V~~v~~sp~~~~~~~~l 231 (316)
T 3bg1_A 155 AVSWA--PAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE-AHSDWVRDVAWAPSIGLPTSTI 231 (316)
T ss_dssp CCEEC--CCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB-CCSSCEEEEECCCCSSCSCCEE
T ss_pred eEEEc--cccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc-cCCCceEEEEecCCCCCCCceE
Confidence 99999 5410 0158999999999999999754 4666676 899999999999986 899
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
++|+.||+|++|++.+
T Consensus 232 as~s~D~~v~iw~~~~ 247 (316)
T 3bg1_A 232 ASCSQDGRVFIWTCDD 247 (316)
T ss_dssp EEEETTCEEEEEECSS
T ss_pred EEEcCCCeEEEEEccC
Confidence 9999999999999976
|
| >2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-28 Score=260.91 Aligned_cols=228 Identities=14% Similarity=0.138 Sum_probs=184.9
Q ss_pred ceEEeccCCCeEEEEeCCCCCCc-----------ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 294 GMICWNECDNLIRLKMSKELPAT-----------PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~-----------~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
.+|++|+.||+|++|++.++... ..+ .+|...|++++|+++ ..|++|+.||+|++||+..+.
T Consensus 226 ~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l-~~h~~~v~sv~~s~~-~~lasgs~DgtV~lWD~~~~~----- 298 (524)
T 2j04_B 226 GCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTL-SLADSLITTFDFLSP-TTVVCGFKNGFVAEFDLTDPE----- 298 (524)
T ss_dssp CEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEE-CCTTTCEEEEEESSS-SEEEEEETTSEEEEEETTBCS-----
T ss_pred ceEEEEecCCeEEEEEcCCCccccccceeecCceEEE-EcCCCCEEEEEecCC-CeEEEEeCCCEEEEEECCCCC-----
Confidence 38999999999999999866422 123 378999999999986 589999999999999997641
Q ss_pred cccCCCeEeeCCCccEEEE--EEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC--CCeeEEEEeCCCCeEEEE
Q psy10778 363 EFCKPPTILLGHSACVTDL--YLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPN--TPVSHVTMSETNGEIASV 437 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l--~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~--~~V~~l~~sp~~~~i~s~ 437 (556)
.+...+.+|...|+++ +|++++ .+|+||+.||+|+|||+++++.+.++.+ | . ..|.+++|+|++..++++
T Consensus 299 ---~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~-~-~~~~~v~~v~fsp~~~~l~s~ 373 (524)
T 2j04_B 299 ---VPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVS-R-FRGSNLVPVVYCPQIYSYIYS 373 (524)
T ss_dssp ---SCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEE-E-CSCCSCCCEEEETTTTEEEEE
T ss_pred ---CceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCccccccc-c-cccCcccceEeCCCcCeEEEe
Confidence 3456789999999999 567887 8999999999999999998876666655 4 3 358899999999999998
Q ss_pred eecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC---------------
Q psy10778 438 LQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK--------------- 500 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~--------------- 500 (556)
+ .+++|++||++ +..+..+ .|...|.+++|+ |+| ++|++|+.||+|++||+..
T Consensus 374 ~-----~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~S--p~g---~~l~Sgs~Dgtv~lwd~~~~~~~~~~~~~~~~~~ 443 (524)
T 2j04_B 374 D-----GASSLRAVPSRAAFAVHPLVSRETTITAIGVS--RLH---PMVLAGSADGSLIITNAARRLLHGIKNSSATQKS 443 (524)
T ss_dssp C-----SSSEEEEEETTCTTCCEEEEECSSCEEEEECC--SSC---CBCEEEETTTEEECCBSCSSTTTCC------CCC
T ss_pred C-----CCCcEEEEECcccccceeeecCCCceEEEEeC--CCC---CeEEEEECCCEEEEEechHhhccccccCccceee
Confidence 8 89999999997 5554444 688999999999 899 8999999999999998521
Q ss_pred -----------------------------CeEEEEecCCCCCCeEEEEEecCC---CEEEEEcCCCcEEEEEcCCC
Q psy10778 501 -----------------------------LAHLLTLNTNVALPVIAVTYSCDS---QHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 501 -----------------------------~~~~~~~~~~h~~~V~~l~~s~dg---~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+..+..+. +|..+|.+++|+|++ ..+++|+.||.|+||++.-.
T Consensus 444 ~~v~~v~~sp~g~~~~~~~~~~~~~~~~~g~~~~~l~-gh~~~V~~Vafsp~~~~~~~lAsg~~~g~vrlw~l~~~ 518 (524)
T 2j04_B 444 LRLWKWDYSIKDDKYRIDSSYEVYPLTVNDVSKAKID-AHGINITCTKWNETSAGGKCYAFSNSAGLLTLEYLSLE 518 (524)
T ss_dssp CEEEECBCCSSSCEEEECCCCCCCC--------------CCCSCCCEEECCSTTTTTEEEEECTTSEEEEEECSCC
T ss_pred eEEEEeccCCCCCeEEccCCceecccccCCcceeeec-CCCceEEEEECCCCCCccHHHHhhccCceEEEEEcccc
Confidence 11112222 578899999999995 49999999999999998754
|
| >3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.3e-27 Score=238.80 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=180.5
Q ss_pred ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC--CCEEEEEc
Q psy10778 317 PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG--FSVAVSSS 394 (556)
Q Consensus 317 ~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs 394 (556)
..+. +|.+.|++++|+|++++|++|+.||.|++|++.... .+.+..+.+|...|++++|+++ +++|++|+
T Consensus 5 ~~~~-~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~-------~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~ 76 (379)
T 3jrp_A 5 VIAN-AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCS 76 (379)
T ss_dssp CCEE-ECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCGGGCSEEEEEE
T ss_pred EEec-CCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCc-------ceeeeEecCCCCcEEEEEeCCCCCCCEEEEec
Confidence 3343 799999999999999999999999999999997320 0445778899999999999987 89999999
Q ss_pred CCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC-C---cEEEEeecCCC
Q psy10778 395 EDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN-A---QLITSLASELR 466 (556)
Q Consensus 395 ~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~-g---~~i~~~~~~~~ 466 (556)
.||.|++||+.+++ .+..+.. | ...|.+++|+|+ +..+++++ .++.|++||++ + .......+...
T Consensus 77 ~dg~v~iwd~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~l~~~~-----~d~~i~v~d~~~~~~~~~~~~~~~~~~ 149 (379)
T 3jrp_A 77 YDGKVLIWKEENGRWSQIAVHAV-H-SASVNSVQWAPHEYGPLLLVAS-----SDGKVSVVEFKENGTTSPIIIDAHAIG 149 (379)
T ss_dssp TTSCEEEEEEETTEEEEEEEECC-C-SSCEEEEEECCGGGCSEEEEEE-----TTSEEEEEECCTTSCCCEEEEECCTTC
T ss_pred cCCEEEEEEcCCCceeEeeeecC-C-CcceEEEEeCCCCCCCEEEEec-----CCCcEEEEecCCCCceeeEEecCCCCc
Confidence 99999999999987 6778887 8 899999999999 89999999 89999999997 3 22333357889
Q ss_pred eEEEEEeeCC-------------CCCcceEEEEEeCCCeEEEEeCCCCe----EEEEecCCCCCCeEEEEEecC---CCE
Q psy10778 467 ITSVTFSNAP-------------EGVSQNVIVTGHSDGTIQLWSGYKLA----HLLTLNTNVALPVIAVTYSCD---SQH 526 (556)
Q Consensus 467 i~~i~~s~~p-------------dg~~~~~l~tg~~dg~I~iwd~~~~~----~~~~~~~~h~~~V~~l~~s~d---g~~ 526 (556)
|.+++|+ | ++ .++++|+.||.|++||+++++ ....+. +|...|++++|+|+ +.+
T Consensus 150 v~~~~~~--~~~~~~~~~~~~~~~~---~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~h~~~v~~~~~sp~~~~~~~ 223 (379)
T 3jrp_A 150 VNSASWA--PATIEEDGEHNGTKES---RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSY 223 (379)
T ss_dssp EEEEEEC--CCC----------CTT---CEEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEE
T ss_pred eEEEEEc--CccccccccccCCCCC---CEEEEEeCCCeEEEEEecCCCcceeeEEEEe-cccCcEeEEEECCCCCCCCe
Confidence 9999999 6 57 899999999999999997654 445665 78999999999999 899
Q ss_pred EEEEcCCCcEEEEEcCCCC
Q psy10778 527 LYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 527 l~sgs~Dg~V~vwdl~~~~ 545 (556)
|++++.||.|++||+.++.
T Consensus 224 l~s~~~dg~i~iwd~~~~~ 242 (379)
T 3jrp_A 224 LASVSQDRTCIIWTQDNEQ 242 (379)
T ss_dssp EEEEETTSCEEEEEESSTT
T ss_pred EEEEeCCCEEEEEeCCCCC
Confidence 9999999999999998854
|
| >3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=1.2e-26 Score=236.49 Aligned_cols=232 Identities=11% Similarity=0.043 Sum_probs=203.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. +|...|++++|+|++++|++++.||.|++||+..+ +.+..+. |
T Consensus 46 ~l~~~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~---------~~~~~~~-~ 114 (369)
T 3zwl_B 46 LLFSCSKDSSASVWYSLNGERLGTLD-GHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNG---------QCVATWK-S 114 (369)
T ss_dssp EEEEEESSSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTC---------CEEEEEE-C
T ss_pred EEEEEeCCCEEEEEeCCCchhhhhhh-hcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------cEEEEee-c
Confidence 78899999999999999888777775 79999999999999999999999999999999865 3445555 8
Q ss_pred CccEEEEEEccCCCEEEEEcCC-----CcEEEEeCCCCe-----------EEEEeCCCCCCC--CeeEEEEeCCCCeEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSED-----GTCLLWDINTIG-----------YIREIPCVDPNT--PVSHVTMSETNGEIAS 436 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~D-----g~I~iwdl~~~~-----------~v~~l~~~h~~~--~V~~l~~sp~~~~i~s 436 (556)
...|.+++|+|+++.+++++.+ |.|.+||+..+. .+..+.. | .. .+.+++|+|++..+++
T Consensus 115 ~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~l~~ 192 (369)
T 3zwl_B 115 PVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIIT-H-EGLDAATVAGWSTKGKYIIA 192 (369)
T ss_dssp SSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEEC-C-TTCCCEEEEEECGGGCEEEE
T ss_pred CCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccC-C-cCccceeEEEEcCCCCEEEE
Confidence 8999999999999999999999 999999987653 2334444 4 44 8999999999999999
Q ss_pred EeecCcCCCCeEEEEEeC--CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q psy10778 437 VLQTTKTGGSILRLHTIN--AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~--g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~ 513 (556)
++ .++.|++||++ ++.+..+. +...|.+++|+ |++ ++|++++.||.|++||+.+++.+..+. +..
T Consensus 193 ~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~ 260 (369)
T 3zwl_B 193 GH-----KDGKISKYDVSNNYEYVDSIDLHEKSISDMQFS--PDL---TYFITSSRDTNSFLVDVSTLQVLKKYE--TDC 260 (369)
T ss_dssp EE-----TTSEEEEEETTTTTEEEEEEECCSSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTCCEEEEEE--CSS
T ss_pred Ec-----CCCEEEEEECCCCcEeEEEEecCCCceeEEEEC--CCC---CEEEEecCCceEEEEECCCCceeeeec--CCC
Confidence 99 89999999997 46666664 67899999999 888 899999999999999999999999987 678
Q ss_pred CeEEEEEecCCCEEEEEcCCC--------------cEEEEEcCCCCCcCeee
Q psy10778 514 PVIAVTYSCDSQHLYASNTEG--------------LVIIWESSSHNRTPKFL 551 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg--------------~V~vwdl~~~~~~~~~~ 551 (556)
.+.+++|+|+++++++++.++ .+++||+.+++.+..+.
T Consensus 261 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~ 312 (369)
T 3zwl_B 261 PLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQ 312 (369)
T ss_dssp CEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEE
T ss_pred CceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhhee
Confidence 999999999999999999998 89999998877665554
|
| >1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.96 E-value=3.6e-27 Score=245.18 Aligned_cols=232 Identities=13% Similarity=0.213 Sum_probs=195.4
Q ss_pred eEEeccCCCeEEEEeC----CCCCC------cceEcC---------CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeee
Q psy10778 295 MICWNECDNLIRLKMS----KELPA------TPVIRP---------PLGATIATATTAPDCHTLWLGLTSGNILVYEYEL 355 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~----~~~~~------~~~~~~---------~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~ 355 (556)
++++|+.||.|++|++ .+++. ...+.. +|.+.|++++|+|++++|++|+.||.|++|+. .
T Consensus 60 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~~-~ 138 (425)
T 1r5m_A 60 ILAYGEKNSVARLARIVETDQEGKKYWKLTIIAELRHPFALSASSGKTTNQVTCLAWSHDGNSIVTGVENGELRLWNK-T 138 (425)
T ss_dssp EEEEEETBTEEEEEEEEEC------CEEEEEEEEEECCCCCC------CBCEEEEEECTTSSEEEEEETTSCEEEEET-T
T ss_pred EEEEecCCceEEEEEEecccCCccccccccccccccccccccccccCCCCceEEEEEcCCCCEEEEEeCCCeEEEEeC-C
Confidence 8889999999999999 77762 333321 15779999999999999999999999999993 2
Q ss_pred ccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC--------------
Q psy10778 356 NASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP-------------- 421 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~-------------- 421 (556)
+ +.+..+.+|...|.+++|+|+++.|++++.||.|++||+.+++.+..+.. + ...
T Consensus 139 ~---------~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~ 207 (425)
T 1r5m_A 139 G---------ALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQHFEL-K-ETGGSSINAENHSGDGS 207 (425)
T ss_dssp S---------CEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEEEECC-C----------------CC
T ss_pred C---------CeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEEEeec-c-ccCccceeeccccCCcc
Confidence 2 44577889999999999999999999999999999999999999998887 6 555
Q ss_pred -eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 422 -VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 422 -V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
+.+++|+++ +.+++++ .++.|++||++ ++.+..+ .+...|.+++|+ |++ ++|++++.||.|++||+
T Consensus 208 ~~~~~~~~~~-~~~~~~~-----~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~--~~~---~~l~~~~~d~~i~i~d~ 276 (425)
T 1r5m_A 208 LGVDVEWVDD-DKFVIPG-----PKGAIFVYQITEKTPTGKLIGHHGPISVLEFN--DTN---KLLLSASDDGTLRIWHG 276 (425)
T ss_dssp CBSCCEEEET-TEEEEEC-----GGGCEEEEETTCSSCSEEECCCSSCEEEEEEE--TTT---TEEEEEETTSCEEEECS
T ss_pred eeeEEEEcCC-CEEEEEc-----CCCeEEEEEcCCCceeeeeccCCCceEEEEEC--CCC---CEEEEEcCCCEEEEEEC
Confidence 999999997 5577777 79999999997 5555555 467899999999 888 89999999999999999
Q ss_pred CCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 499 YKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 499 ~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+++.+..+. +|...|.+++|+|++ .+++++.||.|++||+.+++.+..+.
T Consensus 277 ~~~~~~~~~~-~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~ 327 (425)
T 1r5m_A 277 GNGNSQNCFY-GHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSI 327 (425)
T ss_dssp SSBSCSEEEC-CCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCCccceEec-CCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEecc
Confidence 9999888887 789999999999999 99999999999999998876655443
|
| >3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=7.2e-26 Score=239.95 Aligned_cols=234 Identities=15% Similarity=0.201 Sum_probs=201.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEc--CCCCEEEEEeCCCcEEEEEeeeccCccccc---------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTA--PDCHTLWLGLTSGNILVYEYELNASTNKIE--------- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s--~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~--------- 363 (556)
++++|+.||+|++||..+++....+. +|.+.|.+++++ +++.++++|+.||+|++||+..........
T Consensus 175 ~l~s~s~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~ 253 (464)
T 3v7d_B 175 ILVSGSTDRTVRVWDIKKGCCTHVFE-GHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVF 253 (464)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEEESSSCEEEEEEETTSCEEEEECCCCCCC------CCSSEEE
T ss_pred EEEEEeCCCCEEEEECCCCcEEEEEC-CCCCccEEEEEecCCCCCEEEEEcCCCcEEEeeCCCCcccccccccCCcceEe
Confidence 89999999999999999887776665 799999999998 578899999999999999998653211100
Q ss_pred -----ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEe
Q psy10778 364 -----FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 364 -----~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s 438 (556)
.......+.+|...|.++ +++++++++|+.||.|++||+.+++.+..+.. | ...|.+++|+|++..+++++
T Consensus 254 ~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~l~sg~ 329 (464)
T 3v7d_B 254 HTPEENPYFVGVLRGHMASVRTV--SGHGNIVVSGSYDNTLIVWDVAQMKCLYILSG-H-TDRIYSTIYDHERKRCISAS 329 (464)
T ss_dssp SCGGGCTTEEEEECCCSSCEEEE--EEETTEEEEEETTSCEEEEETTTTEEEEEECC-C-SSCEEEEEEETTTTEEEEEE
T ss_pred eccCCCeEEEEEccCccceEEEE--cCCCCEEEEEeCCCeEEEEECCCCcEEEEecC-C-CCCEEEEEEcCCCCEEEEEe
Confidence 001245788999999887 56788999999999999999999999999998 9 89999999999999999999
Q ss_pred ecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeE
Q psy10778 439 QTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI 516 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~ 516 (556)
.|+.|++||++ ++.+..+. |...|.+++|+ + .+|++|+.||.|++||+.+++...... +...+.
T Consensus 330 -----~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~----~---~~l~s~s~dg~v~vwd~~~~~~~~~~~--~~~~~~ 395 (464)
T 3v7d_B 330 -----MDTTIRIWDLENGELMYTLQGHTALVGLLRLS----D---KFLVSAAADGSIRGWDANDYSRKFSYH--HTNLSA 395 (464)
T ss_dssp -----TTSCEEEEETTTTEEEEEECCCSSCEEEEEEC----S---SEEEEEETTSEEEEEETTTCCEEEEEE--CTTCCC
T ss_pred -----CCCcEEEEECCCCcEEEEEeCCCCcEEEEEEc----C---CEEEEEeCCCcEEEEECCCCceeeeec--CCCCcc
Confidence 89999999997 88887774 77899999997 3 589999999999999999988777775 567788
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 517 AVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
.++|+++++++++|+ ||.|++||+.+++.+.
T Consensus 396 ~~~~~~~~~~l~~~~-dg~i~iwd~~~g~~~~ 426 (464)
T 3v7d_B 396 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVH 426 (464)
T ss_dssp EEEEEECSSEEEEEE-TTEEEEEETTTCCEEE
T ss_pred EEEEEeCCCEEEEec-CCeEEEEECCCCcEEe
Confidence 899999999999998 8999999999977654
|
| >4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=6.6e-28 Score=254.41 Aligned_cols=210 Identities=16% Similarity=0.187 Sum_probs=173.6
Q ss_pred CCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcE
Q psy10778 322 PLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTC 399 (556)
Q Consensus 322 ~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I 399 (556)
.|...|+|++|+| ++++||+|+.||+|+|||+..+.. .....+.+|.+.|++|+|+| ++.+|+||+.||+|
T Consensus 117 ~~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~-------~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v 189 (435)
T 4e54_B 117 PFDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDK-------PTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTT 189 (435)
T ss_dssp ECSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSC-------CEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCE
T ss_pred CCCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCc-------eeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEE
Confidence 5888999999999 567999999999999999876511 12234568999999999998 68899999999999
Q ss_pred EEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCC
Q psy10778 400 LLWDINTIGYIREIPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPE 477 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pd 477 (556)
++||++++........ .+ ...+.+++|+|++..|++++ .++.|++||++++.+..+ .|...|.+++|+ |+
T Consensus 190 ~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~g~-----~dg~i~~wd~~~~~~~~~~~h~~~v~~v~~~--p~ 261 (435)
T 4e54_B 190 RLQDFKGNILRVFASSDTI-NIWFCSLDVSASSRMVVTGD-----NVGNVILLNMDGKELWNLRMHKKKVTHVALN--PC 261 (435)
T ss_dssp EEEETTSCEEEEEECCSSC-SCCCCCEEEETTTTEEEEEC-----SSSBEEEEESSSCBCCCSBCCSSCEEEEEEC--TT
T ss_pred EEeeccCCceeEEeccCCC-CccEEEEEECCCCCEEEEEe-----CCCcEeeeccCcceeEEEecccceEEeeeec--CC
Confidence 9999987544333332 02 34678999999999999999 899999999998766665 468899999999 77
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEec--CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN--TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~--~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+. .++++|+.||.|++||+++.+....+. .+|...|++++|+|+|.+|++++.||.|++||+.++....
T Consensus 262 ~~--~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~~i~iwd~~~~~~~~ 332 (435)
T 4e54_B 262 CD--WFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKSEIRVYSASQWDCPL 332 (435)
T ss_dssp CS--SEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSSCEEEEESSSSSSEE
T ss_pred Cc--eEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCCEEEEEECCCCccce
Confidence 63 589999999999999998776544332 1688999999999999999999999999999998866543
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.2e-27 Score=240.57 Aligned_cols=227 Identities=14% Similarity=0.155 Sum_probs=185.8
Q ss_pred eEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++|+.||.|++|++.+ +........+|...|++++|+|++++|++|+.||.|++||+..+ + ...+.+
T Consensus 56 ~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~---------~-~~~~~~ 125 (368)
T 3mmy_A 56 FLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN---------Q-AIQIAQ 125 (368)
T ss_dssp EEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------E-EEEEEE
T ss_pred EEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCC---------C-ceeecc
Confidence 899999999999999987 44442333379999999999999999999999999999998865 2 234678
Q ss_pred CCccEEEEEE--ccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC---------------------------------
Q psy10778 374 HSACVTDLYL--CAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP--------------------------------- 418 (556)
Q Consensus 374 h~~~V~~l~~--s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~--------------------------------- 418 (556)
|...|++++| ++++.++++++.||.|++||+++++.+..+.. +.
T Consensus 126 ~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~ 204 (368)
T 3mmy_A 126 HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQL-PERCYCADVIYPMAVVATAERGLIVYQLENQPSEF 204 (368)
T ss_dssp CSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEEC-SSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEE
T ss_pred ccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEec-CCCceEEEecCCeeEEEeCCCcEEEEEeccccchh
Confidence 9999999999 88999999999999999999998876666554 20
Q ss_pred -------CCCeeEEEEeCCCCe----EEEEeecCcCCCCeEEEEEeCC----cEEEEeecC-C------------CeEEE
Q psy10778 419 -------NTPVSHVTMSETNGE----IASVLQTTKTGGSILRLHTINA----QLITSLASE-L------------RITSV 470 (556)
Q Consensus 419 -------~~~V~~l~~sp~~~~----i~s~s~~~~~~d~~I~iwdi~g----~~i~~~~~~-~------------~i~~i 470 (556)
...+.++++.++... +++++ .++.|++||++. ..+..+... . .|.++
T Consensus 205 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 279 (368)
T 3mmy_A 205 RRIESPLKHQHRCVAIFKDKQNKPTGFALGS-----IEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGI 279 (368)
T ss_dssp EECCCSCSSCEEEEEEEECTTSCEEEEEEEE-----TTSEEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEE
T ss_pred hhccccccCCCceEEEcccCCCCCCeEEEec-----CCCcEEEEecCCCCccccceeeeeeecccccccccccccceEEE
Confidence 133445555554444 88888 899999999973 333344322 2 69999
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+|+ |++ ++|++|+.||.|++||+.+++++..+. +|..+|++++|+|+|++|++++.|+..+.|++.+
T Consensus 280 ~~s--p~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~~~s~d~~~~~~~~~~ 346 (368)
T 3mmy_A 280 AFH--PVH---GTLATVGSDGRFSFWDKDARTKLKTSE-QLDQPISACCFNHNGNIFAYASSYDWSKGHEFYN 346 (368)
T ss_dssp EEC--TTT---CCEEEEETTSCEEEEETTTTEEEEECC-CCSSCEEEEEECTTSSCEEEEECCCSTTCGGGCC
T ss_pred EEe--cCC---CEEEEEccCCeEEEEECCCCcEEEEec-CCCCCceEEEECCCCCeEEEEecccccccccccC
Confidence 999 888 899999999999999999999999998 8899999999999999999999998766666544
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=271.56 Aligned_cols=226 Identities=17% Similarity=0.175 Sum_probs=205.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++|+..+++....+. +|.+.|++++|+|++++|++|+.||+|++||+.++ +.+..+.+|
T Consensus 629 ~l~s~~~d~~i~vw~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~---------~~~~~~~~~ 698 (1249)
T 3sfz_A 629 RIASCGADKTLQVFKAETGEKLLDIK-AHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATG---------KLVHTYDEH 698 (1249)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTC---------CEEEEEECC
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEec-cCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCC---------ceEEEEcCC
Confidence 88999999999999999988777776 89999999999999999999999999999999876 566888999
Q ss_pred CccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
...|.+++|++ ++.++++|+.||.|++||+.+++.+..+.+ | ...|.+++|+|++..+++++ .|+.|++||
T Consensus 699 ~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~-h-~~~v~~~~~sp~~~~l~s~s-----~dg~v~vwd 771 (1249)
T 3sfz_A 699 SEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFG-H-TNSVNHCRFSPDDELLASCS-----ADGTLRLWD 771 (1249)
T ss_dssp SSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECC-C-SSCEEEEEECSSTTEEEEEE-----SSSEEEEEE
T ss_pred CCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecC-C-CCCEEEEEEecCCCEEEEEE-----CCCeEEEEe
Confidence 99999999999 455899999999999999999999999999 9 99999999999999999999 899999999
Q ss_pred eC-CcEEEEe--------------------------------------------------------ecCCCeEEEEEeeC
Q psy10778 453 IN-AQLITSL--------------------------------------------------------ASELRITSVTFSNA 475 (556)
Q Consensus 453 i~-g~~i~~~--------------------------------------------------------~~~~~i~~i~~s~~ 475 (556)
++ ++....+ .+...+.+++|+
T Consensus 772 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~s-- 849 (1249)
T 3sfz_A 772 VRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFS-- 849 (1249)
T ss_dssp GGGTEEEEEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEEC--
T ss_pred CCCCcccceecccccccccCCccccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEc--
Confidence 86 4332221 235678889999
Q ss_pred CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 476 pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|++ +++++|+.||.|++||+.+++.+..+. +|...|++++|+|+++.+++++.||.|++|++.+
T Consensus 850 p~~---~~l~~~~~dg~v~vwd~~~~~~~~~~~-~h~~~v~~v~~spdg~~l~s~s~dg~v~vw~~~~ 913 (1249)
T 3sfz_A 850 PYD---HLAVIALSQYCVELWNIDSRLKVADCR-GHLSWVHGVMFSPDGSSFLTASDDQTIRVWETKK 913 (1249)
T ss_dssp SST---TEEEEECSSSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSCEEEEEHHH
T ss_pred CCC---CEEEEEeCCCeEEEEEcCCCceeeecC-CCccceEEEEECCCCCEEEEEeCCCeEEEEEccc
Confidence 888 899999999999999999999999998 8999999999999999999999999999999864
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=1.6e-26 Score=243.64 Aligned_cols=218 Identities=19% Similarity=0.308 Sum_probs=195.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++||..+++....+. +|.+.|+++++ ++++|++|+.||+|++||+.++ +.+..+.+|
T Consensus 145 ~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~---------~~~~~~~~h 212 (435)
T 1p22_A 145 KIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTG---------EMLNTLIHH 212 (435)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSC---------CEEEEECCC
T ss_pred EEEEEeCCCeEEEEeCCCCeEEEEEc-CCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCC---------cEEEEEcCC
Confidence 88999999999999999988777775 89999999998 7889999999999999999876 556788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE---EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI---REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
...|.+++|+ +..+++|+.||+|++||+.+++.+ ..+.+ | ...|.++++ ++..+++++ .|+.|++|
T Consensus 213 ~~~v~~l~~~--~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~-~-~~~v~~~~~--~~~~l~s~~-----~dg~i~vw 281 (435)
T 1p22_A 213 CEAVLHLRFN--NGMMVTCSKDRSIAVWDMASPTDITLRRVLVG-H-RAAVNVVDF--DDKYIVSAS-----GDRTIKVW 281 (435)
T ss_dssp CSCEEEEECC--TTEEEEEETTSCEEEEECSSSSCCEEEEEECC-C-SSCEEEEEE--ETTEEEEEE-----TTSEEEEE
T ss_pred CCcEEEEEEc--CCEEEEeeCCCcEEEEeCCCCCCceeeeEecC-C-CCcEEEEEe--CCCEEEEEe-----CCCeEEEE
Confidence 9999999997 459999999999999999987654 66777 8 899999999 678999999 89999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
|++ ++.+..+. +...+.+++++ + +++++|+.||.|++||+.+++.+..+. +|...|++++| ++.+|++
T Consensus 282 d~~~~~~~~~~~~~~~~v~~~~~~----~---~~l~~g~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~~~~--~~~~l~s 351 (435)
T 1p22_A 282 NTSTCEFVRTLNGHKRGIACLQYR----D---RLVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRF--DNKRIVS 351 (435)
T ss_dssp ETTTCCEEEEEECCSSCEEEEEEE----T---TEEEEEETTSCEEEEETTTCCEEEEEC-CCSSCEEEEEC--CSSEEEE
T ss_pred ECCcCcEEEEEcCCCCcEEEEEeC----C---CEEEEEeCCCeEEEEECCCCCEEEEEe-CCcCcEEEEEe--cCCEEEE
Confidence 997 77777775 67899999986 4 689999999999999999999999998 89999999999 6889999
Q ss_pred EcCCCcEEEEEcCCCC
Q psy10778 530 SNTEGLVIIWESSSHN 545 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~ 545 (556)
|+.||.|++||+.++.
T Consensus 352 g~~dg~i~vwd~~~~~ 367 (435)
T 1p22_A 352 GAYDGKIKVWDLVAAL 367 (435)
T ss_dssp EETTSCEEEEEHHHHT
T ss_pred EeCCCcEEEEECCCCC
Confidence 9999999999997643
|
| >3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.7e-27 Score=241.78 Aligned_cols=227 Identities=14% Similarity=0.102 Sum_probs=173.8
Q ss_pred eEEeccCCCeEEEEeCCCCC-Ccce-EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELP-ATPV-IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-~~~~-~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|++|+.||+|++|++.+++ .... ....|...|++++|+|++++|++|+.|+.|++||+..+.. ......+.
T Consensus 69 ~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~------~~~~~~~~ 142 (377)
T 3dwl_C 69 RIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQEND------WWVSKHLK 142 (377)
T ss_dssp CEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----------CCCCEEEC
T ss_pred EEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCccc------ceeeeEee
Confidence 89999999999999998876 2222 2237999999999999999999999999999999987511 12456777
Q ss_pred C-CCccEEEEEEccCCCEEEEEcCCCcEEEEeCC------------------CCeEEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 373 G-HSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN------------------TIGYIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 373 ~-h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~------------------~~~~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
+ |...|++++|+|++++|++|+.||+|++||+. .++.+..+ . | ...|.+++|+|++.+
T Consensus 143 ~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~-~~~v~~~~~sp~~~~ 219 (377)
T 3dwl_C 143 RPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEY-P-S-GGWVHAVGFSPSGNA 219 (377)
T ss_dssp SSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECC-C-C-SSSEEEEEECTTSSC
T ss_pred cccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcc-c-C-CceEEEEEECCCCCE
Confidence 7 99999999999999999999999999999985 35566667 6 8 899999999999999
Q ss_pred EEEEeecCcCCCCeEEEEEeC-CcE----EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-----
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQL----ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA----- 502 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~~----i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~----- 502 (556)
|++++ .|+.|++||++ ++. +..+ .|...|.+++|+ |++ ++|++|+.++.+ +|+.....
T Consensus 220 l~~~~-----~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~---~~l~~~~~~~~~-~~~~~~~~~~~~~ 288 (377)
T 3dwl_C 220 LAYAG-----HDSSVTIAYPSAPEQPPRALITVKLSQLPLRSLLWA--NES---AIVAAGYNYSPI-LLQGNESGWAHTR 288 (377)
T ss_dssp EEEEE-----TTTEEC-CEECSTTSCEEECCCEECSSSCEEEEEEE--ETT---EEEEEESSSSEE-EECCCC---CCSB
T ss_pred EEEEe-----CCCcEEEEECCCCCCcceeeEeecCCCCceEEEEEc--CCC---CEEEEEcCCcEE-EEEeCCCceEEEe
Confidence 99999 89999999997 443 4444 467889999999 888 899999877666 66553111
Q ss_pred ----------------------------------EEEE------------ecCCCCCCeEEEEEecCC-C---EEEEEcC
Q psy10778 503 ----------------------------------HLLT------------LNTNVALPVIAVTYSCDS-Q---HLYASNT 532 (556)
Q Consensus 503 ----------------------------------~~~~------------~~~~h~~~V~~l~~s~dg-~---~l~sgs~ 532 (556)
.... +...|...|+++++.+.. . .|++|+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~H~~~i~~~~~~~~~~~~~~~~~s~g~ 368 (377)
T 3dwl_C 289 DLDAGTSKTSFTHTGNTGEGREEEGPVSFTALRSTFRNMDLKGSSQSISSLPTVHQNMIATLRPYAGTPGNITAFTSSGT 368 (377)
T ss_dssp CCCSCCCCCCBSSSSSBCCCCCC-------------------------CCCSSSCSSCEEEEEEEEEETTEEEEEEEEET
T ss_pred eecccccccccccccccccccccccccccccccccccchhhccccccccccCccccceeEEEeccCCCCCceEEEEeecC
Confidence 0000 111388999999976543 3 6999999
Q ss_pred CCcEEEEEc
Q psy10778 533 EGLVIIWES 541 (556)
Q Consensus 533 Dg~V~vwdl 541 (556)
||.|++||+
T Consensus 369 Dg~i~iWdl 377 (377)
T 3dwl_C 369 DGRVVLWTL 377 (377)
T ss_dssp TSEEEEECC
T ss_pred CCcEEEecC
Confidence 999999985
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.1e-26 Score=248.20 Aligned_cols=239 Identities=15% Similarity=0.224 Sum_probs=204.3
Q ss_pred eEEeccCCCeEEEEeCCCC----CCcceEcCCCCCc-eEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKEL----PATPVIRPPLGAT-IATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~----~~~~~~~~~h~~~-V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
++++++ |+.|++|++.++ +....+. +|.+. |++++|+| ++++|++|+.||+|++|++..+... .......
T Consensus 32 ~l~~~~-~~~v~v~~~~~~~~~~~~~~~~~-~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~-~~~~~~~ 108 (615)
T 1pgu_A 32 AIAYPC-GKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKES-NSVEVNV 108 (615)
T ss_dssp EEEEEE-TTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGG-TEEEEEE
T ss_pred EEEEec-CCeEEEEECCCCCCccccceEEe-cCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCccc-ccccccc
Confidence 666666 899999999987 6666665 89999 99999999 9999999999999999999743100 0001134
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCC----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCc
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSED----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTK 442 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~D----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~ 442 (556)
...+.+|...|.+++|+|+++.+++++.+ +.|.+|| .++.+..+.. | ...|.+++|+|++. .+++++
T Consensus 109 ~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~-~-~~~v~~~~~~~~~~~~l~~~~---- 180 (615)
T 1pgu_A 109 KSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSG-H-SQRINACHLKQSRPMRSMTVG---- 180 (615)
T ss_dssp EEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCS-C-SSCEEEEEECSSSSCEEEEEE----
T ss_pred cchhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeec-C-CccEEEEEECCCCCcEEEEEe----
Confidence 56788899999999999999999999987 6888888 5678888988 9 89999999999998 788888
Q ss_pred CCCCeEEEEEeC-CcEEEEee-cCC---CeEEEEEeeCCC-CCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCC
Q psy10778 443 TGGSILRLHTIN-AQLITSLA-SEL---RITSVTFSNAPE-GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NVAL 513 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~~-~~~---~i~~i~~s~~pd-g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h~~ 513 (556)
.++.|++||++ ++.+..+. +.. .|.+++|+ |+ + ++|++|+.||.|++||+.+++.+..+.. .|..
T Consensus 181 -~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 181 -DDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS--PDSG---EFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp -TTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC--STTC---CEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred -CCCcEEEEeCCCcceeeeecccCCCCceEEEEEEC--CCCC---CEEEEEeCCCeEEEEECCCCCEeEEecccccccCC
Confidence 89999999997 67777775 566 89999999 88 8 8999999999999999999999999843 6899
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.|.+++|+ ++++|++++.||.|++||+.+++....+.
T Consensus 255 ~v~~~~~~-~~~~l~~~~~d~~i~~wd~~~~~~~~~~~ 291 (615)
T 1pgu_A 255 GIFALSWL-DSQKFATVGADATIRVWDVTTSKCVQKWT 291 (615)
T ss_dssp CEEEEEES-SSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred ceEEEEEc-CCCEEEEEcCCCcEEEEECCCCcEEEEEc
Confidence 99999999 99999999999999999999876655543
|
| >2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A | Back alignment and structure |
|---|
Probab=99.95 E-value=6.4e-27 Score=243.76 Aligned_cols=229 Identities=11% Similarity=0.072 Sum_probs=191.9
Q ss_pred ceEEeccCCCeEEEEeCCCC-------CCcceEcCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCccccccc
Q psy10778 294 GMICWNECDNLIRLKMSKEL-------PATPVIRPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~-------~~~~~~~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
.++++|+.||+|++|++.++ +....+. +|...|++++|+|++ .+|++|+.||+|++||+..+
T Consensus 95 ~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~-~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~--------- 164 (402)
T 2aq5_A 95 NVIASGSEDCTVMVWEIPDGGLVLPLREPVITLE-GHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTG--------- 164 (402)
T ss_dssp TEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEE-CCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTT---------
T ss_pred CEEEEEeCCCeEEEEEccCCCCccccCCceEEec-CCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCC---------
Confidence 38999999999999999877 3344444 799999999999998 69999999999999999865
Q ss_pred CCCeEe--eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe-CCCCCCCC-eeEEEEeCCCCeEEEE---e
Q psy10778 366 KPPTIL--LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI-PCVDPNTP-VSHVTMSETNGEIASV---L 438 (556)
Q Consensus 366 ~~~~~l--~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l-~~~h~~~~-V~~l~~sp~~~~i~s~---s 438 (556)
+.+..+ .+|...|++++|+|++++|++++.||.|++||+++++.+..+ .. | ... +.+++|+|++..++++ +
T Consensus 165 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~l~~g~~~~ 242 (402)
T 2aq5_A 165 AAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRP-H-EGTRPVHAVFVSEGKILTTGFSRM 242 (402)
T ss_dssp EEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECS-S-CSSSCCEEEECSTTEEEEEEECTT
T ss_pred CccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccC-C-CCCcceEEEEcCCCcEEEEeccCC
Confidence 445677 789999999999999999999999999999999999999988 66 7 554 8999999999999988 5
Q ss_pred ecCcCCCCeEEEEEeC-Cc---EEEEeecCCCeEEEEEeeCCCCCcceEEE-EEeCCCeEEEEeCCCCeE-EEEecC-CC
Q psy10778 439 QTTKTGGSILRLHTIN-AQ---LITSLASELRITSVTFSNAPEGVSQNVIV-TGHSDGTIQLWSGYKLAH-LLTLNT-NV 511 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~-g~---~i~~~~~~~~i~~i~~s~~pdg~~~~~l~-tg~~dg~I~iwd~~~~~~-~~~~~~-~h 511 (556)
.++.|++||++ ++ ......+...+.+++|+ |++ ++|+ +|+.||.|++||+.+++. +..+.. .|
T Consensus 243 -----~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s--~~~---~~l~~~g~~dg~i~i~d~~~~~~~~~~l~~~~~ 312 (402)
T 2aq5_A 243 -----SERQVALWDTKHLEEPLSLQELDTSSGVLLPFFD--PDT---NIVYLCGKGDSSIRYFEITSEAPFLHYLSMFSS 312 (402)
T ss_dssp -----CCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEE--TTT---TEEEEEETTCSCEEEEEECSSTTCEEEEEEECC
T ss_pred -----CCceEEEEcCccccCCceEEeccCCCceeEEEEc--CCC---CEEEEEEcCCCeEEEEEecCCCcceEeeccccc
Confidence 79999999997 33 23344567889999999 888 6775 566899999999998773 444331 35
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 512 ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 512 ~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
..+|++++|+|++.++++ .++.+++|++.++..
T Consensus 313 ~~~v~~~~~sp~~~~~~s--~~~~~~~~~l~~~~~ 345 (402)
T 2aq5_A 313 KESQRGMGYMPKRGLEVN--KCEIARFYKLHERKC 345 (402)
T ss_dssp SSCCSEEEECCGGGSCGG--GTEEEEEEEEETTEE
T ss_pred CCcccceEEeccccccee--cceeEEEEEcCCCcE
Confidence 689999999999988764 577999999987544
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.7e-27 Score=264.50 Aligned_cols=230 Identities=14% Similarity=0.153 Sum_probs=194.2
Q ss_pred eEEeccCCCeEEEEeCCCC--CCcceEcCCCCCceEEEEEcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKEL--PATPVIRPPLGATIATATTAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--~~~~~~~~~h~~~V~~i~~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++++|+.||+|++|+..++ +....+. +|.+.|++++|+++ +++|++|+.||+|++||+..+. ......
T Consensus 23 ~latg~~dg~I~vwd~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~-------~~~~~~ 94 (753)
T 3jro_A 23 RLATCSSDKTIKIFEVEGETHKLIDTLT-GHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGR-------WSQIAV 94 (753)
T ss_dssp CEEEEETTTEEEEEEEETTEEEEEEEEC-CCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTE-------EEEEEE
T ss_pred eEEEEECCCcEEEEecCCCCCccceecc-CCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCc-------cccccc
Confidence 7889999999999998743 3333443 79999999999988 9999999999999999998651 124567
Q ss_pred eeCCCccEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeC-------------CCCe
Q psy10778 371 LLGHSACVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSE-------------TNGE 433 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp-------------~~~~ 433 (556)
+.+|...|++++|+|+ ++.+++|+.||+|++||++++. ....+.. | ...|.+++|+| ++..
T Consensus 95 ~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~-~-~~~v~~l~~~p~~~~~~~~~~~~~d~~~ 172 (753)
T 3jro_A 95 HAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDA-H-AIGVNSASWAPATIEEDGEHNGTKESRK 172 (753)
T ss_dssp ECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEEC-C-SSCEEEEEECCCC---------CGGGCC
T ss_pred ccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeec-C-CCceEEEEecCcccccccccccCCCCCE
Confidence 8899999999999999 9999999999999999998873 3445666 7 89999999999 5899
Q ss_pred EEEEeecCcCCCCeEEEEEeC-C----cEEEEe-ecCCCeEEEEEeeCCC---CCcceEEEEEeCCCeEEEEeCCCCe--
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-A----QLITSL-ASELRITSVTFSNAPE---GVSQNVIVTGHSDGTIQLWSGYKLA-- 502 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g----~~i~~~-~~~~~i~~i~~s~~pd---g~~~~~l~tg~~dg~I~iwd~~~~~-- 502 (556)
+++++ .||.|++||++ + .....+ .|...|.+++|+ |+ + +++++|+.||.|++||+.+++
T Consensus 173 l~sgs-----~dg~I~iwd~~~~~~~~~~~~~~~~h~~~V~~l~~s--p~~~~~---~~l~s~s~Dg~I~iwd~~~~~~~ 242 (753)
T 3jro_A 173 FVTGG-----ADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWS--PTVLLR---SYLASVSQDRTCIIWTQDNEQGP 242 (753)
T ss_dssp EEEEE-----TTSCEEEEEEETTTTEEEEEEEECCCSSCEEEEEEC--CCCSSS---EEEEEEESSSCEEEEEESSSSSC
T ss_pred EEEEE-----CCCeEEEEeccCCcccceeeeeecCCCCcEEEEEec--cCCCCC---CEEEEEecCCEEEEecCCCCCCc
Confidence 99999 89999999997 3 334444 468899999999 77 7 899999999999999998764
Q ss_pred ---EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 503 ---HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 503 ---~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
.+.... .|...|++++|+|+|+++++|+.||.|++|++.+..
T Consensus 243 ~~~~~~~~~-~~~~~v~~l~~spdg~~l~s~s~Dg~I~vwd~~~~~ 287 (753)
T 3jro_A 243 WKKTLLKEE-KFPDVLWRASWSLSGNVLALSGGDNKVTLWKENLEG 287 (753)
T ss_dssp CBCCBSSSS-CCSSCCCCEEECTTTCCEEEECSSSCEECCBCCSSS
T ss_pred ceeEEeccC-CCCCceEEEEEcCCCCEEEEEcCCCEEEEEecCCCC
Confidence 222222 578899999999999999999999999999998643
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-27 Score=240.09 Aligned_cols=234 Identities=12% Similarity=0.070 Sum_probs=183.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-eC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-LG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~~ 373 (556)
++++|+.||+|++||+.+++....+. ...|.+++++|+ +++|+.|++|++|+.......-.....+.+... .+
T Consensus 50 ~l~sg~~Dg~v~iwd~~~~~~~~~~~---~~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~ 123 (343)
T 3lrv_A 50 VCMCRCEDGALHFTQLKDSKTITTIT---TPNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVD 123 (343)
T ss_dssp EEEEEEETTEEEEEEESSSSCEEEEE---EECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECC
T ss_pred EEEEECCCCcEEEEECCCCcEEEEEe---cCCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecC
Confidence 89999999999999999888776665 456778888887 999999999999986532100000000112233 36
Q ss_pred CCccEEEEEEcc--CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCA--GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~--~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
|.+.|.+++|+| +++++++|+.||+|++||+++++.+......+ ...+.+++|+|++..+++|+ .|+.|++|
T Consensus 124 ~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~-~~~i~~~~~~pdg~~lasg~-----~dg~i~iw 197 (343)
T 3lrv_A 124 SANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKS-DVEYSSGVLHKDSLLLALYS-----PDGILDVY 197 (343)
T ss_dssp CSSCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCS-SCCCCEEEECTTSCEEEEEC-----TTSCEEEE
T ss_pred CCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCC-CCceEEEEECCCCCEEEEEc-----CCCEEEEE
Confidence 778999999999 99999999999999999999998877765414 56899999999999999999 89999999
Q ss_pred EeC-CcEE-EEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCe--EEEEEecC
Q psy10778 452 TIN-AQLI-TSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPV--IAVTYSCD 523 (556)
Q Consensus 452 di~-g~~i-~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V--~~l~~s~d 523 (556)
|++ ++.+ ..+. |...|++++|+ |+| .+|++++ ++.|++||+++++.+..+.. .|...+ .+++|+|+
T Consensus 198 d~~~~~~~~~~~~~~h~~~v~~l~fs--~~g---~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (343)
T 3lrv_A 198 NLSSPDQASSRFPVDEEAKIKEVKFA--DNG---YWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDS 271 (343)
T ss_dssp ESSCTTSCCEECCCCTTSCEEEEEEC--TTS---SEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTT
T ss_pred ECCCCCCCccEEeccCCCCEEEEEEe--CCC---CEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCC
Confidence 997 5554 4443 68999999999 899 8999999 55999999998876655441 133333 46999999
Q ss_pred CCEEEEEcC-CCcEEEEEcCCCCC
Q psy10778 524 SQHLYASNT-EGLVIIWESSSHNR 546 (556)
Q Consensus 524 g~~l~sgs~-Dg~V~vwdl~~~~~ 546 (556)
|++|++++. |+.|++|++.+..+
T Consensus 272 g~~l~~~s~~d~~i~v~~~~~~~~ 295 (343)
T 3lrv_A 272 GKNMIAYSNESNSLTIYKFDKKTK 295 (343)
T ss_dssp SSEEEEEETTTTEEEEEEECTTTC
T ss_pred CCEEEEecCCCCcEEEEEEccccc
Confidence 999999988 99999999977544
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.95 E-value=5.3e-27 Score=244.30 Aligned_cols=227 Identities=11% Similarity=0.057 Sum_probs=175.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcce--E--cCCCCCceEEEEEcC--------CCCEEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPV--I--RPPLGATIATATTAP--------DCHTLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~--~--~~~h~~~V~~i~~s~--------dg~~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
++++|+.|++|+||+..++..... + ..+|.+.|++++|+| |+++||+|+.|++|+|||+..+
T Consensus 103 ~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~------ 176 (393)
T 4gq1_A 103 FLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDE------ 176 (393)
T ss_dssp EEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETT------
T ss_pred EEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCC------
Confidence 899999999999999987654321 1 237999999999997 7899999999999999999865
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEe-------------------------CCC
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREI-------------------------PCV 416 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l-------------------------~~~ 416 (556)
.+...+.+|...|.+++|+|++. +|++|+.||+|++||+++++..... .+
T Consensus 177 ---~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~- 252 (393)
T 4gq1_A 177 ---GPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSG- 252 (393)
T ss_dssp ---EEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------C-
T ss_pred ---ceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccc-
Confidence 44567788999999999999875 8999999999999999887543322 23
Q ss_pred CCCCCeeEEEEe-CCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-c------------------CCCeEEEEEeeC
Q psy10778 417 DPNTPVSHVTMS-ETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-S------------------ELRITSVTFSNA 475 (556)
Q Consensus 417 h~~~~V~~l~~s-p~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~------------------~~~i~~i~~s~~ 475 (556)
| ...+.+++|+ +++..|++++ .|+++++||+. ++....+. + ........+++.
T Consensus 253 ~-~~~v~~v~~~~~dg~~l~s~s-----~d~~i~vwd~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (393)
T 4gq1_A 253 I-ASSLANVRWIGSDGSGILAMC-----KSGAWLRWNLFANNDYNEISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPR 326 (393)
T ss_dssp C-SSSCSEEEEETTTTCEEEEEC-----TTSEEEEEEC-------------------CCSCSEEEECSSCCSSCCEECSS
T ss_pred c-cccceeeeeecCCCCEEEEEe-----CCCCEEEEECccCCCCceEeeecCccccEEEccccccccccCcceeEEEccC
Confidence 5 5678899987 7899999998 89999999986 33322221 1 122233445533
Q ss_pred CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 476 pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.++ .++++|+.||.|++||+.+++....+. +|..+|++++|+|||++|++++.+| +.+|.+.
T Consensus 327 ~~~---~~~~sgs~Dg~V~lwd~~~~~~~~~~~-~~~~~V~svafspdG~~LA~as~~G-v~lvrL~ 388 (393)
T 4gq1_A 327 YMD---YFATAHSQHGLIQLINTYEKDSNSIPI-QLGMPIVDFCWHQDGSHLAIATEGS-VLLTRLM 388 (393)
T ss_dssp CTT---EEEEEETTTTEEEEEETTCTTCCEEEE-ECSSCEEEEEECTTSSEEEEEESSE-EEEEEEG
T ss_pred CCC---EEEEEECCCCEEEEEECCCCcEEEEec-CCCCcEEEEEEcCCCCEEEEEeCCC-eEEEEEe
Confidence 455 678889999999999999998877776 6889999999999999999998766 6666654
|
| >3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=240.44 Aligned_cols=232 Identities=12% Similarity=0.131 Sum_probs=182.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCc---------------------------------------ceEcCCCCCceEEEEEcCC
Q psy10778 295 MICWNECDNLIRLKMSKELPAT---------------------------------------PVIRPPLGATIATATTAPD 335 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~---------------------------------------~~~~~~h~~~V~~i~~s~d 335 (556)
++++|+.||+|++|+..+++.. ..+..+|...|++++|+|+
T Consensus 109 ~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 188 (447)
T 3dw8_B 109 QFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINSD 188 (447)
T ss_dssp EEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECTT
T ss_pred eEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcCC
Confidence 7888999999999998753221 1223479999999999999
Q ss_pred CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeE----E
Q psy10778 336 CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGY----I 410 (556)
Q Consensus 336 g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~----v 410 (556)
+++|++| .||+|++||+............ ....+.+|...|++++|+|++ .++++|+.||+|++||+++++. +
T Consensus 189 ~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 266 (447)
T 3dw8_B 189 YETYLSA-DDLRINLWHLEITDRSFNIVDI-KPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASALCDRHS 266 (447)
T ss_dssp SSEEEEE-CSSEEEEEETTEEEEEEEEEEC-CCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSSSCTTC
T ss_pred CCEEEEe-CCCeEEEEECCCCCceeeeeec-ccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcccccee
Confidence 9999999 7999999999843110000000 011366899999999999998 8999999999999999999886 7
Q ss_pred EEeCCCCCCC------------CeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEeecCCC----------
Q psy10778 411 REIPCVDPNT------------PVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLASELR---------- 466 (556)
Q Consensus 411 ~~l~~~h~~~------------~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~~~~~---------- 466 (556)
..+.. | .. .|.+++|+|++.+|++++ . +.|++||++ ++++..+.....
T Consensus 267 ~~~~~-~-~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~-----~-~~v~iwd~~~~~~~~~~~~~~~~~~~~l~~~~~ 338 (447)
T 3dw8_B 267 KLFEE-P-EDPSNRSFFSEIISSISDVKFSHSGRYMMTRD-----Y-LSVKVWDLNMENRPVETYQVHEYLRSKLCSLYE 338 (447)
T ss_dssp EEECC-C------CCHHHHHTTCEEEEEECTTSSEEEEEE-----S-SEEEEEETTCCSSCSCCEESCGGGTTTHHHHHH
T ss_pred eEecc-C-CCccccccccccCceEEEEEECCCCCEEEEee-----C-CeEEEEeCCCCccccceeecccccccccccccc
Confidence 88887 6 54 899999999999999998 7 999999996 666666654332
Q ss_pred ------eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-------------------------------
Q psy10778 467 ------ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------------------------------- 509 (556)
Q Consensus 467 ------i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------------------------------- 509 (556)
+..++|+ |++ ++|++|+.||.|++||+.+++.+.....
T Consensus 339 ~~~i~~~~~~~~s--~~~---~~l~s~s~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 413 (447)
T 3dw8_B 339 NDCIFDKFECCWN--GSD---SVVMTGSYNNFFRMFDRNTKRDITLEASRENNKPRTVLKPRKVCASGKRKKDEISVDSL 413 (447)
T ss_dssp TSGGGCCCCEEEC--TTS---SEEEEECSTTEEEEEETTTCCEEEEECCSTTCCTTCBCCCCCEECSSCCCTTCEEGGGC
T ss_pred ccccccceEEEEC--CCC---CEEEEeccCCEEEEEEcCCCcceeeeecccccccccccCCccccccCCccccccccccc
Confidence 3349999 899 8999999999999999998887642210
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.+...|.+++|+|++..|++++.++ +++|.-+
T Consensus 414 ~~~~~i~~~~~~p~~~~la~~~~~~-~~~~~~~ 445 (447)
T 3dw8_B 414 DFNKKILHTAWHPKENIIAVATTNN-LYIFQDK 445 (447)
T ss_dssp CTTSCCCEEEECSSSSEEEEECSSC-EEEEECC
T ss_pred ccCCceeEEEECCCCCEEEEEecce-eeeeccc
Confidence 2345789999999999999998775 8888653
|
| >1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 | Back alignment and structure |
|---|
Probab=99.95 E-value=3.5e-26 Score=241.02 Aligned_cols=223 Identities=18% Similarity=0.259 Sum_probs=191.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++||..+++....+. +|...|.+++|++ ..+++|+.||.|++||+..+... .....+.+|
T Consensus 185 ~l~sg~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~------~~~~~~~~~ 255 (435)
T 1p22_A 185 VIITGSSDSTVRVWDVNTGEMLNTLI-HHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDI------TLRRVLVGH 255 (435)
T ss_dssp EEEEEETTSCEEEEESSSCCEEEEEC-CCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCC------EEEEEECCC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEc-CCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCc------eeeeEecCC
Confidence 89999999999999999988877776 7999999999964 59999999999999999865110 112677899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.++++ +++.+++|+.||.|++||+++++.+..+.. | ...|.+++++ +..+++++ .|+.|++||++
T Consensus 256 ~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~-~~~v~~~~~~--~~~l~~g~-----~dg~i~iwd~~ 324 (435)
T 1p22_A 256 RAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNG-H-KRGIACLQYR--DRLVVSGS-----SDNTIRLWDIE 324 (435)
T ss_dssp SSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEEC-C-SSCEEEEEEE--TTEEEEEE-----TTSCEEEEETT
T ss_pred CCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcC-C-CCcEEEEEeC--CCEEEEEe-----CCCeEEEEECC
Confidence 999999999 678999999999999999999999999998 8 8999999995 67999998 89999999998
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe---------EEEEecCCCCCCeEEEEEecC
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA---------HLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~---------~~~~~~~~h~~~V~~l~~s~d 523 (556)
++.+..+. |...|.+++|. + .+|++|+.||.|++||+.+++ .+..+. +|...|++++| +
T Consensus 325 ~~~~~~~~~~h~~~v~~~~~~----~---~~l~sg~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~-~h~~~v~~l~~--~ 394 (435)
T 1p22_A 325 CGACLRVLEGHEELVRCIRFD----N---KRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLV-EHSGRVFRLQF--D 394 (435)
T ss_dssp TCCEEEEECCCSSCEEEEECC----S---SEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEEC-CCSSCCCCEEE--C
T ss_pred CCCEEEEEeCCcCcEEEEEec----C---CEEEEEeCCCcEEEEECCCCCCccccccchheeecc-CCCCCeEEEEe--C
Confidence 88888775 67889999884 5 689999999999999997665 788887 89999999999 6
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 524 SQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+..|++|+.||.|++||+.+....
T Consensus 395 ~~~l~s~s~Dg~i~iwd~~~~~~~ 418 (435)
T 1p22_A 395 EFQIVSSSHDDTILIWDFLNDPAA 418 (435)
T ss_dssp SSCEEECCSSSEEEEEC-------
T ss_pred CCEEEEEeCCCEEEEEECCCCCCc
Confidence 888999999999999999885543
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2e-25 Score=235.63 Aligned_cols=224 Identities=16% Similarity=0.241 Sum_probs=199.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||+|++|+..+++....+. +|...|.+++++ ++.+++|+.||+|++||+..+ +.+..+.+|
T Consensus 171 ~l~s~~~dg~i~vwd~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~~~~---------~~~~~~~~~ 238 (445)
T 2ovr_B 171 IIISGSTDRTLKVWNAETGECIHTLY-GHTSTVRCMHLH--EKRVVSGSRDATLRVWDIETG---------QCLHVLMGH 238 (445)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEEE--TTEEEEEETTSEEEEEESSSC---------CEEEEEECC
T ss_pred EEEEEeCCCeEEEEECCcCcEEEEEC-CCCCcEEEEEec--CCEEEEEeCCCEEEEEECCCC---------cEEEEEcCC
Confidence 89999999999999999887777765 899999999995 578999999999999999876 556788999
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.++++ +++.+++|+.||.|++||+++++.+..+.. | ...|.++++ ++..+++++ .|+.|++||++
T Consensus 239 ~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~-~-~~~v~~~~~--~~~~l~~~~-----~d~~i~i~d~~ 307 (445)
T 2ovr_B 239 VAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQG-H-TNRVYSLQF--DGIHVVSGS-----LDTSIRVWDVE 307 (445)
T ss_dssp SSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECC-C-SSCEEEEEE--CSSEEEEEE-----TTSCEEEEETT
T ss_pred cccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecC-C-CCceEEEEE--CCCEEEEEe-----CCCeEEEEECC
Confidence 999999999 678999999999999999999999999998 8 899999999 788999999 89999999997
Q ss_pred -CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEE
Q psy10778 455 -AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 455 -g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sg 530 (556)
++.+..+. +...+.++.++ + +++++|+.||.|++||+.+++.+..+.. .|...|++++|+ +.+|++|
T Consensus 308 ~~~~~~~~~~~~~~v~~~~~~----~---~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~ 378 (445)
T 2ovr_B 308 TGNCIHTLTGHQSLTSGMELK----D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITS 378 (445)
T ss_dssp TCCEEEEECCCCSCEEEEEEE----T---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEE
T ss_pred CCCEEEEEcCCcccEEEEEEe----C---CEEEEEeCCCeEEEEECCCCcEEEEEccCCCCCCCEEEEEEC--CCEEEEE
Confidence 77777774 66788888876 4 6899999999999999999999999873 378899999996 6899999
Q ss_pred cCCCcEEEEEcCCCCCcCee
Q psy10778 531 NTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~~~~~~ 550 (556)
+.||.|++||+.+++.+..+
T Consensus 379 ~~dg~v~iwd~~~~~~~~~~ 398 (445)
T 2ovr_B 379 SDDGTVKLWDLKTGEFIRNL 398 (445)
T ss_dssp ETTSEEEEEETTTCCEEEEE
T ss_pred eCCCeEEEEECCCCceeeee
Confidence 99999999999998877665
|
| >2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=2.1e-25 Score=235.56 Aligned_cols=220 Identities=18% Similarity=0.198 Sum_probs=197.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++||..+++....+. +|...|+++++ +++++++|+.||.|++||+..+ +.+..+.+|
T Consensus 211 ~l~s~s~dg~i~~wd~~~~~~~~~~~-~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~---------~~~~~~~~~ 278 (445)
T 2ovr_B 211 RVVSGSRDATLRVWDIETGQCLHVLM-GHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETE---------TCLHTLQGH 278 (445)
T ss_dssp EEEEEETTSEEEEEESSSCCEEEEEE-CCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGT---------EEEEEECCC
T ss_pred EEEEEeCCCEEEEEECCCCcEEEEEc-CCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCC---------cEeEEecCC
Confidence 79999999999999999888777765 79999999999 7789999999999999998865 556788899
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...|.+++| ++..+++|+.||.|++||+++++.+..+.. | ...+.+++++ ++.+++++ .|+.|++||++
T Consensus 279 ~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~~v~~~~~~--~~~l~~~~-----~dg~i~vwd~~ 347 (445)
T 2ovr_B 279 TNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTG-H-QSLTSGMELK--DNILVSGN-----ADSTVKIWDIK 347 (445)
T ss_dssp SSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECC-C-CSCEEEEEEE--TTEEEEEE-----TTSCEEEEETT
T ss_pred CCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcC-C-cccEEEEEEe--CCEEEEEe-----CCCeEEEEECC
Confidence 999999999 788999999999999999999999999998 8 8889888875 57899998 89999999996
Q ss_pred -CcEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec----CCCCCCeEEEEEecCCC
Q psy10778 455 -AQLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN----TNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 455 -g~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~----~~h~~~V~~l~~s~dg~ 525 (556)
++.+..+. +...|.+++|+ + ++|++|+.||.|++||+.+++.+..+. .+|.+.|++++|+|++.
T Consensus 348 ~~~~~~~~~~~~~~~~~v~~~~~~----~---~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~ 420 (445)
T 2ovr_B 348 TGQCLQTLQGPNKHQSAVTCLQFN----K---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKL 420 (445)
T ss_dssp TCCEEEEECSTTSCSSCEEEEEEC----S---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEE
T ss_pred CCcEEEEEccCCCCCCCEEEEEEC----C---CEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEE
Confidence 88888775 67889999997 3 689999999999999999999988882 15788999999999999
Q ss_pred EEEEEcCCCc----EEEEEcCCC
Q psy10778 526 HLYASNTEGL----VIIWESSSH 544 (556)
Q Consensus 526 ~l~sgs~Dg~----V~vwdl~~~ 544 (556)
++++|+.||. |.+||+...
T Consensus 421 ~la~~~~dg~~~~~l~v~df~~~ 443 (445)
T 2ovr_B 421 VCAVGSRNGTEETKLLVLDFDVD 443 (445)
T ss_dssp EEEEECSSSSSCCEEEEEECCCC
T ss_pred EEEEcccCCCCccEEEEEECCCC
Confidence 9999999998 999999764
|
| >3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-25 Score=226.61 Aligned_cols=209 Identities=11% Similarity=0.089 Sum_probs=178.2
Q ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--CCCEEEEEcCC
Q psy10778 319 IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--GFSVAVSSSED 396 (556)
Q Consensus 319 ~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--~~~~l~sgs~D 396 (556)
+..+|.+.|++++|+|++++|++|+.||.|++|++..+.... +....+.+|...|++++|+| ++++|++|+.|
T Consensus 6 ~~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~d 80 (351)
T 3f3f_A 6 FDSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNW-----ELSDSWRAHDSSIVAIDWASPEYGRIIASASYD 80 (351)
T ss_dssp EECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCE-----EEEEEEECCSSCEEEEEECCGGGCSEEEEEETT
T ss_pred cCcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcc-----eecceeccCCCcEEEEEEcCCCCCCEEEEEcCC
Confidence 334899999999999999999999999999999998642111 23467789999999999999 58999999999
Q ss_pred CcEEEEeCCCC---------eEEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe---
Q psy10778 397 GTCLLWDINTI---------GYIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTIN-AQLITSL--- 461 (556)
Q Consensus 397 g~I~iwdl~~~---------~~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~--- 461 (556)
|+|++||+.++ +.+..+.. | ...|.+++|+|+ +..+++++ .|+.|++||++ ++.+..+
T Consensus 81 g~v~vwd~~~~~~~~~~~~~~~~~~~~~-~-~~~v~~~~~~~~~~~~~l~~~~-----~dg~v~iwd~~~~~~~~~~~~~ 153 (351)
T 3f3f_A 81 KTVKLWEEDPDQEECSGRRWNKLCTLND-S-KGSLYSVKFAPAHLGLKLACLG-----NDGILRLYDALEPSDLRSWTLT 153 (351)
T ss_dssp SCEEEEEECTTSCTTSSCSEEEEEEECC-C-SSCEEEEEECCGGGCSEEEEEE-----TTCEEEEEECSSTTCTTCCEEE
T ss_pred CeEEEEecCCCcccccccCcceeeeecc-c-CCceeEEEEcCCCCCcEEEEec-----CCCcEEEecCCChHHhcccccc
Confidence 99999999887 56788888 8 899999999999 99999999 89999999986 3322111
Q ss_pred -----------ecCCCeEEEEEeeCCC---CCcceEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCC-
Q psy10778 462 -----------ASELRITSVTFSNAPE---GVSQNVIVTGHSDGTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDS- 524 (556)
Q Consensus 462 -----------~~~~~i~~i~~s~~pd---g~~~~~l~tg~~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg- 524 (556)
.+...+.+++|+ |+ + ..+++++.++.+.+|+...++. +..+. +|...|++++|+|++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~--p~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~i~~~~~~p~~~ 227 (351)
T 3f3f_A 154 SEMKVLSIPPANHLQSDFCLSWC--PSRFSP---EKLAVSALEQAIIYQRGKDGKLHVAAKLP-GHKSLIRSISWAPSIG 227 (351)
T ss_dssp EEEESCSCCCSSCSCCCEEEEEC--CCSSSC---CEEEEEETTEEEEEEECTTSCEEEEEECC-CCCSCEEEEEECCCSS
T ss_pred ccccccccccCCcccceeEEEec--cCCCCC---cEEEEecCCCcEEEEccCCCceeeeeecC-CCCcceeEEEECCCCC
Confidence 245789999999 65 5 8999999999998888877765 56666 799999999999998
Q ss_pred ---CEEEEEcCCCcEEEEEcCCCC
Q psy10778 525 ---QHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 525 ---~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
++|++|+.||.|++||+.++.
T Consensus 228 ~~~~~l~s~~~dg~i~iwd~~~~~ 251 (351)
T 3f3f_A 228 RWYQLIATGCKDGRIRIFKITEKL 251 (351)
T ss_dssp CSSEEEEEEETTSCEEEEEEEECC
T ss_pred CcceEEEEEcCCCeEEEEeCCCCc
Confidence 899999999999999998753
|
| >4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.8e-26 Score=235.54 Aligned_cols=234 Identities=23% Similarity=0.276 Sum_probs=189.9
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCC-----CeEeeCC
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKP-----PTILLGH 374 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~-----~~~l~~h 374 (556)
.++.+++|+.+.++...... +|.+.|++++|+| ++++|++|+.||.|++|++.......... ... .....+|
T Consensus 21 ~~~~~~v~~~~~~~~~~~~~-~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 98 (408)
T 4a11_B 21 AESTRRVLGLELNKDRDVER-IHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYT-CKAVCSIGRDHPDVH 98 (408)
T ss_dssp HHHHHHHHTEEECTTEEECC-CCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEE-ECEEEEECTTCTTCC
T ss_pred ccCcceeeccccCcceeeee-ccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEe-ccccccccccccccC
Confidence 45667788877766665554 7999999999999 99999999999999999998762111100 000 0011369
Q ss_pred CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC---CeEEEEeecCcCCCCeEEE
Q psy10778 375 SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETN---GEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 375 ~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~---~~i~s~s~~~~~~d~~I~i 450 (556)
...|.+++|+| ++.++++++.||.|++||+.+++.+..+.. ...+.++++++.+ ..+++++ .++.|++
T Consensus 99 ~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~ 170 (408)
T 4a11_B 99 RYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGT-----RGPKVQL 170 (408)
T ss_dssp SSCEEEEEECTTCTTCEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEE-----SSSSEEE
T ss_pred CCcEEEEEEccCCCcEEEEEeCCCeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEc-----CCCeEEE
Confidence 99999999999 778999999999999999999998888876 6889999999854 4888888 8999999
Q ss_pred EEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-EEEEec--------------CCCCC
Q psy10778 451 HTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA-HLLTLN--------------TNVAL 513 (556)
Q Consensus 451 wdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~-~~~~~~--------------~~h~~ 513 (556)
||++ ++.+..+. +...|.+++|+ |++. .++++|+.||.|++||++++. .+..+. .+|..
T Consensus 171 ~d~~~~~~~~~~~~~~~~v~~~~~~--~~~~--~ll~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (408)
T 4a11_B 171 CDLKSGSCSHILQGHRQEILAVSWS--PRYD--YILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNG 246 (408)
T ss_dssp EESSSSCCCEEECCCCSCEEEEEEC--SSCT--TEEEEEETTSCEEEEETTCSSCCSEECCTTTTCSCCCTTTSSCSCSS
T ss_pred EeCCCcceeeeecCCCCcEEEEEEC--CCCC--cEEEEEcCCCcEEEEECCCCCcccccccccccccceeeccccccccC
Confidence 9997 66666664 78899999999 7772 379999999999999998765 344431 15788
Q ss_pred CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
.|++++|+|++++|++++.||.|++||+.+++...
T Consensus 247 ~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~ 281 (408)
T 4a11_B 247 KVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTL 281 (408)
T ss_dssp CEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCC
T ss_pred ceeEEEEcCCCCEEEEecCCCeEEEEECCCCccce
Confidence 99999999999999999999999999999866543
|
| >3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=8.8e-26 Score=237.37 Aligned_cols=228 Identities=14% Similarity=0.221 Sum_probs=182.8
Q ss_pred EeCCCCCCcceEcCCCCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC
Q psy10778 308 KMSKELPATPVIRPPLGATIATATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG 386 (556)
Q Consensus 308 w~~~~~~~~~~~~~~h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~ 386 (556)
|+. +++.+..+..+|.+.|++++|+| ++++|++|+.||+|++||+...... .. .+....+ +|...|++++|+|+
T Consensus 48 w~~-~g~~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~-~~--~~~~~~~-~h~~~v~~~~~~~~ 122 (437)
T 3gre_A 48 GNL-RGKLIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVG-EV--YSSSLTY-DCSSTVTQITMIPN 122 (437)
T ss_dssp GGC-CCCEEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTT-CC--CSCSEEE-ECSSCEEEEEECTT
T ss_pred ccc-cceEEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccC-cc--cceeeec-cCCCCEEEEEEeCC
Confidence 553 34555566448999999999999 9999999999999999998762110 00 1222333 59999999999999
Q ss_pred CCEEEEEcCCCcEEEEeCC---CCeEEEEeCC---------C--CCCCCeeEEE--EeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 387 FSVAVSSSEDGTCLLWDIN---TIGYIREIPC---------V--DPNTPVSHVT--MSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 387 ~~~l~sgs~Dg~I~iwdl~---~~~~v~~l~~---------~--h~~~~V~~l~--~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
++.|++|+.||+|++||+. +++.++.... + + ...+.++. +++++..+++++ .++.|++
T Consensus 123 ~~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~-----~d~~i~i 196 (437)
T 3gre_A 123 FDAFAVSSKDGQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGK-NEYAVRMRAFVNEEKSLLVALT-----NLSRVII 196 (437)
T ss_dssp SSEEEEEETTSEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSS-CCCEEEEEEEECSSCEEEEEEE-----TTSEEEE
T ss_pred CCEEEEEeCCCEEEEEEeccccCCceeeccccceeEEEEccCccc-ccCceEEEEEEcCCCCEEEEEe-----CCCeEEE
Confidence 9999999999999999994 4444333221 0 1 45667776 567899999999 8999999
Q ss_pred EEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec----
Q psy10778 451 HTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC---- 522 (556)
Q Consensus 451 wdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~---- 522 (556)
||++ ++.+..+. |...|++++|+ |++ ++|++|+.||.|++||+++++++..+...|..+|++++|+|
T Consensus 197 wd~~~~~~~~~~~~~~h~~~v~~~~~s--~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~s~ 271 (437)
T 3gre_A 197 FDIRTLERLQIIENSPRHGAVSSICID--EEC---CVLILGTTRGIIDIWDIRFNVLIRSWSFGDHAPITHVEVCQFYGK 271 (437)
T ss_dssp EETTTCCEEEEEECCGGGCCEEEEEEC--TTS---CEEEEEETTSCEEEEETTTTEEEEEEBCTTCEEEEEEEECTTTCT
T ss_pred EeCCCCeeeEEEccCCCCCceEEEEEC--CCC---CEEEEEcCCCeEEEEEcCCccEEEEEecCCCCceEEEEeccccCC
Confidence 9997 77777775 57899999999 888 89999999999999999999999988656778999996654
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 523 DSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
++.+|++|+.||.|++||+.+++....+.
T Consensus 272 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 300 (437)
T 3gre_A 272 NSVIVVGGSSKTFLTIWNFVKGHCQYAFI 300 (437)
T ss_dssp TEEEEEEESTTEEEEEEETTTTEEEEEEE
T ss_pred CccEEEEEcCCCcEEEEEcCCCcEEEEEE
Confidence 67899999999999999999877655544
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=3.7e-25 Score=234.30 Aligned_cols=197 Identities=13% Similarity=0.120 Sum_probs=171.1
Q ss_pred CCCceEEEEEcCCCCEE-EEEeCCCcEEEEEee--eccCcccccccCCCeEee--CCCccEEEEEEccCCCEEEEEcCCC
Q psy10778 323 LGATIATATTAPDCHTL-WLGLTSGNILVYEYE--LNASTNKIEFCKPPTILL--GHSACVTDLYLCAGFSVAVSSSEDG 397 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~--~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~~~~~l~sgs~Dg 397 (556)
|.+.|++++|+|++++| ++|+.||.|++|++. .+ +.+..+. .|...|++++|+|++++|++|+.||
T Consensus 101 ~~~~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~---------~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g 171 (450)
T 2vdu_B 101 IYSYIRNLRLTSDESRLIACADSDKSLLVFDVDKTSK---------NVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFG 171 (450)
T ss_dssp CCCCEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSS---------SCEEEEEEEECSSCEEEEEECTTSSEEEEEETTS
T ss_pred cCCceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCC---------ceeeeeecccCCCCceEEEEcCCCCEEEEEeCCC
Confidence 44579999999999996 899999999999998 54 4445555 6778999999999999999999999
Q ss_pred cEEEEeCCCCeEEE----EeCCCCCCCCeeEEEEeCC---CCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe--ecCCCe
Q psy10778 398 TCLLWDINTIGYIR----EIPCVDPNTPVSHVTMSET---NGEIASVLQTTKTGGSILRLHTIN-AQLITSL--ASELRI 467 (556)
Q Consensus 398 ~I~iwdl~~~~~v~----~l~~~h~~~~V~~l~~sp~---~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~--~~~~~i 467 (556)
.+.+|++.+++... .+.+ | ...|.+++|+|+ +.+|++++ .|+.|++||++ ++.+..+ .|...|
T Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~-h-~~~v~~~~~sp~~~~~~~l~s~~-----~d~~i~vwd~~~~~~~~~~~~~h~~~v 244 (450)
T 2vdu_B 172 DVYSIDINSIPEEKFTQEPILG-H-VSMLTDVHLIKDSDGHQFIITSD-----RDEHIKISHYPQCFIVDKWLFGHKHFV 244 (450)
T ss_dssp EEEEEETTSCCCSSCCCCCSEE-C-SSCEEEEEEEECTTSCEEEEEEE-----TTSCEEEEEESCTTCEEEECCCCSSCE
T ss_pred cEEEEecCCcccccccceeeec-c-cCceEEEEEcCCCCCCcEEEEEc-----CCCcEEEEECCCCceeeeeecCCCCce
Confidence 99999998876543 6667 8 889999999999 88999999 89999999997 6666653 478899
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------------------------CCCCCeEEEEEecC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------------------------NVALPVIAVTYSCD 523 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------------------------~h~~~V~~l~~s~d 523 (556)
.+++|+ ++ ++|++|+.|+.|++||+.+++.+..+.. .....|.+++|+|+
T Consensus 245 ~~~~~s---d~---~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~ 318 (450)
T 2vdu_B 245 SSICCG---KD---YLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKSKN 318 (450)
T ss_dssp EEEEEC---ST---TEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEECSS
T ss_pred EEEEEC---CC---CEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEeCC
Confidence 999998 56 7999999999999999999998888752 12357999999999
Q ss_pred CCEEEEEc-CCCcEEEEEc
Q psy10778 524 SQHLYASN-TEGLVIIWES 541 (556)
Q Consensus 524 g~~l~sgs-~Dg~V~vwdl 541 (556)
+++|++++ .|+.|++|++
T Consensus 319 ~~~l~~~~~~d~~i~iw~~ 337 (450)
T 2vdu_B 319 LPFVAFFVEATKCIIILEM 337 (450)
T ss_dssp SSEEEEEETTCSEEEEEEE
T ss_pred CCEEEEEECCCCeEEEEEe
Confidence 99999998 8999999999
|
| >3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.94 E-value=1.7e-25 Score=227.83 Aligned_cols=213 Identities=13% Similarity=0.157 Sum_probs=171.5
Q ss_pred CCCCceEEEEEcCC---CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCc
Q psy10778 322 PLGATIATATTAPD---CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGT 398 (556)
Q Consensus 322 ~h~~~V~~i~~s~d---g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~ 398 (556)
+|.+.|++++|+|+ |++|++|+.||.|++|++.... . .....+.+|...|++++|+|++++|++++.||.
T Consensus 37 ~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~---~----~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~ 109 (368)
T 3mmy_A 37 SPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSG---Q----TIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT 109 (368)
T ss_dssp CCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTS---C----EEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCC---c----eeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence 79999999999999 6999999999999999998631 0 122678899999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEeCCCCCCCCeeEEEE--eCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC----------
Q psy10778 399 CLLWDINTIGYIREIPCVDPNTPVSHVTM--SETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASEL---------- 465 (556)
Q Consensus 399 I~iwdl~~~~~v~~l~~~h~~~~V~~l~~--sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~---------- 465 (556)
|++||+.+++.+... . | ...|.+++| ++++..+++++ .|+.|++||++ ++.+..+....
T Consensus 110 v~iwd~~~~~~~~~~-~-~-~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 181 (368)
T 3mmy_A 110 AKMWDLSSNQAIQIA-Q-H-DAPVKTIHWIKAPNYSCVMTGS-----WDKTLKFWDTRSSNPMMVLQLPERCYCADVIYP 181 (368)
T ss_dssp EEEEETTTTEEEEEE-E-C-SSCEEEEEEEECSSCEEEEEEE-----TTSEEEEECSSCSSCSEEEECSSCEEEEEEETT
T ss_pred EEEEEcCCCCceeec-c-c-cCceEEEEEEeCCCCCEEEEcc-----CCCcEEEEECCCCcEEEEEecCCCceEEEecCC
Confidence 999999998877754 4 6 899999999 88999999999 89999999986 55444443222
Q ss_pred --------------------------------CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC---eEEEEecCC
Q psy10778 466 --------------------------------RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL---AHLLTLNTN 510 (556)
Q Consensus 466 --------------------------------~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~---~~~~~~~~~ 510 (556)
...++++...... ....+++|+.||.|++||+... +.+..+. +
T Consensus 182 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~-~ 259 (368)
T 3mmy_A 182 MAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQN-KPTGFALGSIEGRVAIHYINPPNPAKDNFTFK-C 259 (368)
T ss_dssp EEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTS-CEEEEEEEETTSEEEEEESSCSCHHHHSEEEE-C
T ss_pred eeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCC-CCCeEEEecCCCcEEEEecCCCCccccceeee-e
Confidence 2334444421211 0134999999999999999876 4556665 5
Q ss_pred CCC------------CeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 511 VAL------------PVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 511 h~~------------~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.. +|++++|+|++++|++|+.||.|++||+.+++.+..+.
T Consensus 260 ~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~ 312 (368)
T 3mmy_A 260 HRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSE 312 (368)
T ss_dssp SEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred eecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEec
Confidence 544 79999999999999999999999999999876655544
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=99.94 E-value=7.6e-25 Score=248.31 Aligned_cols=230 Identities=14% Similarity=0.129 Sum_probs=201.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.||.|++|+..+++....+. +|.+.|++++|+|++++|++|+.||+|++|++..+. .....+.+|
T Consensus 69 ~l~~~~~dg~i~vw~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~--------~~~~~~~~~ 139 (814)
T 3mkq_A 69 WIIVGSDDFRIRVFNYNTGEKVVDFE-AHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNW--------ALEQTFEGH 139 (814)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTS--------EEEEEEECC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCc--------eEEEEEcCC
Confidence 89999999999999999988777775 799999999999999999999999999999987541 234678899
Q ss_pred CccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC--CCCeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE--TNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp--~~~~i~s~s~~~~~~d~~I~iw 451 (556)
...|.+++|+| ++..+++++.||+|++||+.+++....+.. +....+.+++|+| ++..+++++ .++.|++|
T Consensus 140 ~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~l~~~~-----~dg~i~~~ 213 (814)
T 3mkq_A 140 EHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTT-GQERGVNYVDYYPLPDKPYMITAS-----DDLTIKIW 213 (814)
T ss_dssp SSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEEC-CCTTCCCEEEECCSTTCCEEEEEC-----TTSEEEEE
T ss_pred CCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEec-CCCCCEEEEEEEECCCCCEEEEEe-----CCCEEEEE
Confidence 99999999999 888999999999999999998887777766 4148999999999 899999999 89999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE-EE
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH-LY 528 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~-l~ 528 (556)
|++ ++.+..+. +...|.+++|+ |++ +++++|+.||.|++||+.+++.+..+. .|...+.+++|+|++.. ++
T Consensus 214 d~~~~~~~~~~~~~~~~v~~~~~~--~~~---~~l~~~~~dg~v~vwd~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~ 287 (814)
T 3mkq_A 214 DYQTKSCVATLEGHMSNVSFAVFH--PTL---PIIISGSEDGTLKIWNSSTYKVEKTLN-VGLERSWCIATHPTGRKNYI 287 (814)
T ss_dssp ETTTTEEEEEEECCSSCEEEEEEC--SSS---SEEEEEETTSCEEEEETTTCSEEEEEC-CSSSSEEEEEECTTCGGGEE
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEc--CCC---CEEEEEeCCCeEEEEECCCCcEEEEee-cCCCcEEEEEEccCCCceEE
Confidence 997 77777775 67899999999 899 899999999999999999999999998 68899999999999863 24
Q ss_pred EEcCCCcEEEEEcCCCC
Q psy10778 529 ASNTEGLVIIWESSSHN 545 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~ 545 (556)
+++.++.+.+|++....
T Consensus 288 ~~~~~~~~~~~~~~~~~ 304 (814)
T 3mkq_A 288 ASGFDNGFTVLSLGNDE 304 (814)
T ss_dssp EEEETTEEEEEECSCCS
T ss_pred EEEeCCCEEEEEcCCCC
Confidence 44557779999987644
|
| >1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A | Back alignment and structure |
|---|
Probab=99.94 E-value=8.9e-25 Score=238.95 Aligned_cols=230 Identities=10% Similarity=0.112 Sum_probs=201.2
Q ss_pred ceEEeccCCCeEEEEeCCCC--------CCcceEcCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCccc
Q psy10778 294 GMICWNECDNLIRLKMSKEL--------PATPVIRPPLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNK 361 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~--------~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~ 361 (556)
.++++|+.||.|++|+..++ +....+. .|...|.+++|+|++++|++++.+ +.|++|+. +
T Consensus 79 ~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d~--~----- 150 (615)
T 1pgu_A 79 QYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQ-VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDS--G----- 150 (615)
T ss_dssp CEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEE-CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTT--C-----
T ss_pred CEEEEecCCCEEEEEeCCCCcccccccccccchhh-cccccEEEEEEeCCCCEEEEeccCCCCccEEEEEEC--C-----
Confidence 38999999999999999744 3334443 689999999999999999999987 68888882 2
Q ss_pred ccccCCCeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC---CeeEEEEeCC-CCeEEE
Q psy10778 362 IEFCKPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNT---PVSHVTMSET-NGEIAS 436 (556)
Q Consensus 362 ~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~---~V~~l~~sp~-~~~i~s 436 (556)
+.+..+.+|...|++++|+|+++ .+++++.||.|++||+.+++.+..+.. | .. .|.+++|+|+ +..+++
T Consensus 151 ----~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~-~-~~~~~~v~~~~~~~~~~~~l~~ 224 (615)
T 1pgu_A 151 ----NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRT-H-HKQGSFVRDVEFSPDSGEFVIT 224 (615)
T ss_dssp ----CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECS-S-SCTTCCEEEEEECSTTCCEEEE
T ss_pred ----CcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecc-c-CCCCceEEEEEECCCCCCEEEE
Confidence 34577889999999999999998 899999999999999999999999998 8 77 8999999999 999999
Q ss_pred EeecCcCCCCeEEEEEeC-CcEEEEe-----ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q psy10778 437 VLQTTKTGGSILRLHTIN-AQLITSL-----ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN 510 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~-g~~i~~~-----~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 510 (556)
++ .++.|++||++ ++.+..+ .+...|.+++|+ ++ ++|++++.||.|++||+.+++.+..+. .
T Consensus 225 ~~-----~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~---~~---~~l~~~~~d~~i~~wd~~~~~~~~~~~-~ 292 (615)
T 1pgu_A 225 VG-----SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL---DS---QKFATVGADATIRVWDVTTSKCVQKWT-L 292 (615)
T ss_dssp EE-----TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES---SS---SEEEEEETTSEEEEEETTTTEEEEEEE-C
T ss_pred Ee-----CCCeEEEEECCCCCEeEEecccccccCCceEEEEEc---CC---CEEEEEcCCCcEEEEECCCCcEEEEEc-C
Confidence 99 89999999997 8888888 678899999998 55 799999999999999999999999887 3
Q ss_pred C----CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 511 V----ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 511 h----~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
+ ...+.++.|+ ++..+++++.||.|++||+.+++.+..+
T Consensus 293 ~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~~~~~~~~~ 335 (615)
T 1pgu_A 293 DKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELGHDEVLKTI 335 (615)
T ss_dssp CTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETTEEEEEEEE
T ss_pred CCCcccCceeEEEeC-CCCeEEEEECCCCEEEEECCCCcEEEEE
Confidence 3 4678888886 8899999999999999999875554443
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.94 E-value=4.6e-25 Score=220.74 Aligned_cols=198 Identities=14% Similarity=0.119 Sum_probs=150.0
Q ss_pred ceEEEEEcCC----CCEEEEEeC--------------------CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 326 TIATATTAPD----CHTLWLGLT--------------------SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 326 ~V~~i~~s~d----g~~l~tgs~--------------------Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
.|++++++|+ ++.+++++. |+.|++|++... + +.+..+.+|...++.+
T Consensus 113 ~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~d---G-----~~~~s~~~~~~~v~~l 184 (356)
T 2w18_A 113 EIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAED---G-----GGKENQFLMPPEETIL 184 (356)
T ss_dssp EEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTT---S-----CEEEEEEECCCSSCEE
T ss_pred ceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCC---C-----ceeeeeccCCCceeeE
Confidence 6788888999 888887664 666777776331 0 3345677888888888
Q ss_pred EEcc---CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC---CCeeEEEEeCCCCeEEEEeec-------CcCCCCeE
Q psy10778 382 YLCA---GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN---TPVSHVTMSETNGEIASVLQT-------TKTGGSIL 448 (556)
Q Consensus 382 ~~s~---~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~---~~V~~l~~sp~~~~i~s~s~~-------~~~~d~~I 448 (556)
+|++ ++.+|+||+.|++|+|||+.+++.++++.. | . ..+.+++|+|++..+++++.+ .++.|++|
T Consensus 185 ~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g-~-~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tI 262 (356)
T 2w18_A 185 TFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHI-D-DSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQL 262 (356)
T ss_dssp EEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEEC-C-C---CCCEEEEEEETTEEEEEEC------------CCEEE
T ss_pred EeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcC-C-CcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEE
Confidence 8888 678999999999999999999999999986 4 3 357788999999887543310 01289999
Q ss_pred EEEEeC-CcEEEEee------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeE-EEEE
Q psy10778 449 RLHTIN-AQLITSLA------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVI-AVTY 520 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~-~l~~ 520 (556)
++||.+ ++.+..+. +...+.+..++ + .++++|+.||+|+|||+.+++++.++. +|...+. +++|
T Consensus 263 klWd~~tgk~l~v~~~~~p~Gh~~~~lsg~~s----g---~~lASgS~DgTIkIWDl~tGk~l~tL~-gH~~~vvs~vaf 334 (356)
T 2w18_A 263 IVINPKTTLSVGVMLYCLPPGQAGRFLEGDVK----D---HCAAAILTSGTIAIWDLLLGQCTALLP-PVSDQHWSFVKW 334 (356)
T ss_dssp EEEETTTTEEEEEEEECCCTTCCCCEEEEEEE----T---TEEEEEETTSCEEEEETTTCSEEEEEC-CC--CCCCEEEE
T ss_pred EEEECCCCEEEEEEEeeccCCCcceeEccccC----C---CEEEEEcCCCcEEEEECCCCcEEEEec-CCCCCeEEEEEE
Confidence 999997 66665542 22334333333 5 689999999999999999999999998 6766554 6899
Q ss_pred ecCCCEEEEEcCCCcEEEEEc
Q psy10778 521 SCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl 541 (556)
+|||++|++|+.|++|+|||+
T Consensus 335 SPDG~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 335 SGTDSHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp CSSSSEEEEECTTSCEEEEEE
T ss_pred CCCCCEEEEEECCCcEEEecC
Confidence 999999999999999999996
|
| >3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=8.3e-25 Score=259.74 Aligned_cols=239 Identities=13% Similarity=0.163 Sum_probs=203.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc-----------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE----------- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~----------- 363 (556)
++++|+.||.|++||..+++....+. +|.+.|++++|+|+++++++|+.||+|++||+..+.......
T Consensus 715 ~l~sg~~d~~v~vwd~~~~~~~~~~~-~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~ 793 (1249)
T 3sfz_A 715 LLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDP 793 (1249)
T ss_dssp EEEEEETTSCEEEEETTSSSEEEEEC-CCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC------
T ss_pred EEEEEeCCCeEEEEECCCcchhheec-CCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCc
Confidence 78999999999999999988777765 899999999999999999999999999999986542100000
Q ss_pred ----------------------------------ccCCCeE-eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10778 364 ----------------------------------FCKPPTI-LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG 408 (556)
Q Consensus 364 ----------------------------------~~~~~~~-l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~ 408 (556)
....... ..+|...|.+++|+|+++.+++++.||.|++||+.++.
T Consensus 794 ~~~~~~~v~~~~~s~dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~ 873 (1249)
T 3sfz_A 794 PEDVEVIVKCCSWSADGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRL 873 (1249)
T ss_dssp --CCCCCBCCCCBCTTSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTE
T ss_pred cccccceEEEEEECCCCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCc
Confidence 0001111 23789999999999999999999999999999999999
Q ss_pred EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-------E-----------------------E
Q psy10778 409 YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ-------L-----------------------I 458 (556)
Q Consensus 409 ~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-------~-----------------------i 458 (556)
.+..+.+ | ...|.+++|+|++..+++++ .|+.|++|++... . +
T Consensus 874 ~~~~~~~-h-~~~v~~v~~spdg~~l~s~s-----~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 946 (1249)
T 3sfz_A 874 KVADCRG-H-LSWVHGVMFSPDGSSFLTAS-----DDQTIRVWETKKVCKNSAIVLKQEIDVVFQENETMVLAVDNIRGL 946 (1249)
T ss_dssp EEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEEEHHHHHSCCSSSEEEEEEEEEETTEEEEEEEESSSSE
T ss_pred eeeecCC-C-ccceEEEEECCCCCEEEEEe-----CCCeEEEEEccccceeeeecccceeeEEEcCCCcEEEEecCCcce
Confidence 9999999 9 89999999999999999999 8999999996410 0 0
Q ss_pred E---------EeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 459 T---------SLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 459 ~---------~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
. .......+.+++|+ |++ +++++|+.+|.|++||+.+++....+. +|...|++++|+|++++|++
T Consensus 947 ~~~~~~~~~~~~~~~~~i~~~~~s--p~g---~~l~~g~~~g~i~i~d~~~~~~~~~~~-~h~~~v~~l~~s~dg~~l~s 1020 (1249)
T 3sfz_A 947 QLIAGKTGQIDYLPEAQVSCCCLS--PHL---EYVAFGDEDGAIKIIELPNNRVFSSGV-GHKKAVRHIQFTADGKTLIS 1020 (1249)
T ss_dssp EEEEESSCCEEEECCSCEEEEEEC--TTS---SEEEEEETTSCCEEEETTTTSCEEECC-CCSSCCCCEEECSSSSCEEE
T ss_pred EEEecCcceEEEcccCcEEEEEEc--CCC---CEEEEEcCCCCEEEEEcCCCceeeecc-cCCCceEEEEECCCCCEEEE
Confidence 0 01124578999999 899 899999999999999999999998887 89999999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCc
Q psy10778 530 SNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~ 547 (556)
++.||.|++||+.+++..
T Consensus 1021 ~~~dg~i~vwd~~~~~~~ 1038 (1249)
T 3sfz_A 1021 SSEDSVIQVWNWQTGDYV 1038 (1249)
T ss_dssp ECSSSBEEEEETTTTEEE
T ss_pred EcCCCEEEEEECCCCceE
Confidence 999999999999886543
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=231.12 Aligned_cols=261 Identities=12% Similarity=0.009 Sum_probs=195.8
Q ss_pred ccCCCCCcceeEeeccCCeEeeecceeeeeeeccCcccccccccccccCCcc-eEEeccCCCeEEEEeCCCCCCcceEcC
Q psy10778 243 KHKHRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTNLISSLNVIGAGAG-MICWNECDNLIRLKMSKELPATPVIRP 321 (556)
Q Consensus 243 ~~~~~~~i~~l~~l~~~~v~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~-~l~~gs~Dg~I~lw~~~~~~~~~~~~~ 321 (556)
+++....+.++...++|...+-......+.. .+.. ..+ .+.... +-+.=+.||.++.|++.+++....+..
T Consensus 11 ~~~~~~~v~sv~~SpDG~~iASas~D~TV~d--~~~~-~~l-----~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~ 82 (588)
T 2j04_A 11 RKEFEDWKNNLTWARDGTLYLTTFPDISIGQ--PKYA-KDI-----NCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNS 82 (588)
T ss_dssp SCCCSSSSCCEEECTTSCEEEECSSSEEEEE--ECCC-SCC-----SSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTT
T ss_pred HhHhhccEEEEEECCCCCEEEEEcCCceeec--cccc-cee-----cCCCccEEEEEECCCCCcceEEEEeCCCceEeec
Confidence 3455666777777778877665443333221 1100 000 010000 222225677777777776665555555
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc-----cEEEEEEccCCCEEEEEcCC
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA-----CVTDLYLCAGFSVAVSSSED 396 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~-----~V~~l~~s~~~~~l~sgs~D 396 (556)
.|.+.|.+++|+|+|++||+++.||+|++|+... .+..+. |.. .|.+++|||+|++|++|+.|
T Consensus 83 ~~~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~-----------~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~D 150 (588)
T 2j04_A 83 QPVCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK-----------MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNED 150 (588)
T ss_dssp SCSCCEEEEEECSSSSCEEEEETTSCEEEEETTE-----------EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETT
T ss_pred CCCCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc-----------eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCC
Confidence 7788999999999999999999999999999532 234455 655 59999999999999999999
Q ss_pred CcEEEEeCCCCe-------EEEEe----CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE----EEEe
Q psy10778 397 GTCLLWDINTIG-------YIREI----PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL----ITSL 461 (556)
Q Consensus 397 g~I~iwdl~~~~-------~v~~l----~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~----i~~~ 461 (556)
|+|++||+.+++ .+.++ .+ | ...|.+++|+|+| +++++ .|+.|++||+++.. ..++
T Consensus 151 GtVkIWd~~~~~l~~~~~i~l~ti~~~~~g-h-~~~V~sVawSPdg--Laass-----~D~tVrlWd~~~~~~~~~~~tL 221 (588)
T 2j04_A 151 GELQFFSIRKNSENTPEFYFESSIRLSDAG-S-KDWVTHIVWYEDV--LVAAL-----SNNSVFSMTVSASSHQPVSRMI 221 (588)
T ss_dssp SEEEEEECCCCTTTCCCCEEEEEEECSCTT-C-CCCEEEEEEETTE--EEEEE-----TTCCEEEECCCSSSSCCCEEEE
T ss_pred CEEEEEECCCCccccccceeeeeeeccccc-c-cccEEEEEEcCCc--EEEEe-----CCCeEEEEECCCCccccceeee
Confidence 999999999875 36776 55 7 6899999999998 77777 89999999997433 2344
Q ss_pred --ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE--ecCCCEEEEEcCCCcEE
Q psy10778 462 --ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY--SCDSQHLYASNTEGLVI 537 (556)
Q Consensus 462 --~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~--s~dg~~l~sgs~Dg~V~ 537 (556)
.|...|.+++|+ | ..|++++ +|+|++||+.+++...... +|...|.+++| +||+..++++++||+ +
T Consensus 222 ~~~h~~~V~svaFs----g---~~LASa~-~~tIkLWd~~~~~~~~~~~-gh~~~V~~va~~~s~d~~~La~a~edG~-k 291 (588)
T 2j04_A 222 QNASRRKITDLKIV----D---YKVVLTC-PGYVHKIDLKNYSISSLKT-GSLENFHIIPLNHEKESTILLMSNKTSY-K 291 (588)
T ss_dssp ECCCSSCCCCEEEE----T---TEEEEEC-SSEEEEEETTTTEEEEEEC-SCCSCCCEEEETTCSSCEEEEECSSCEE-E
T ss_pred cccccCcEEEEEEE----C---CEEEEEe-CCeEEEEECCCCeEEEEEc-CCCceEEEEEeeeCCCCCEEEEEcCCCC-E
Confidence 356789999998 3 5888887 6999999998877744443 69999999999 999999999999999 9
Q ss_pred EEEcC
Q psy10778 538 IWESS 542 (556)
Q Consensus 538 vwdl~ 542 (556)
+|...
T Consensus 292 lw~~d 296 (588)
T 2j04_A 292 VLLED 296 (588)
T ss_dssp EEESS
T ss_pred EEeec
Confidence 99986
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=5.7e-24 Score=219.83 Aligned_cols=229 Identities=11% Similarity=0.104 Sum_probs=192.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.|+.|++||..+++....+. .| ..+.+++|+|+++++ ++++.|++|++||+.++ +.+..+..
T Consensus 4 l~vs~~~d~~v~v~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~---------~~~~~~~~ 72 (391)
T 1l0q_A 4 AYIANSESDNISVIDVTSNKVTATIP-VG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------NVIATVPA 72 (391)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEE-CS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------EEEEEEEC
T ss_pred EEEEcCCCCEEEEEECCCCeEEEEee-cC-CCcceEEECCCCCEEEEECCCCCeEEEEECCCC---------eEEEEEEC
Confidence 78889999999999999887776665 34 568999999999977 67779999999998765 33455555
Q ss_pred CCccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeE-EEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEI-ASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i-~s~s~~~~~~d~~I~iw 451 (556)
+. .+.+++|+|+++.+ ++++.++.|++||+.+++.+..+.. ...+.+++|+|+++.+ ++++ .++.|++|
T Consensus 73 ~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~-----~~~~v~~~ 143 (391)
T 1l0q_A 73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNN-----GDKTVSVI 143 (391)
T ss_dssp SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEET-----TTTEEEEE
T ss_pred CC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEEEeC---CCCcceEEECCCCCEEEEEeC-----CCCEEEEE
Confidence 54 89999999999976 5666789999999999999888887 4678999999999988 4555 78999999
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
|++ ++.+..+.....+.+++|+ |++ +.+ ++++.++.|++||+.+++.+..+. +...+.+++|+|+++.|++
T Consensus 144 d~~~~~~~~~~~~~~~~~~~~~~--~dg---~~l~~~~~~~~~v~~~d~~~~~~~~~~~--~~~~~~~~~~~~~g~~l~~ 216 (391)
T 1l0q_A 144 NTVTKAVINTVSVGRSPKGIAVT--PDG---TKVYVANFDSMSISVIDTVTNSVIDTVK--VEAAPSGIAVNPEGTKAYV 216 (391)
T ss_dssp ETTTTEEEEEEECCSSEEEEEEC--TTS---SEEEEEETTTTEEEEEETTTTEEEEEEE--CSSEEEEEEECTTSSEEEE
T ss_pred ECCCCcEEEEEecCCCcceEEEC--CCC---CEEEEEeCCCCEEEEEECCCCeEEEEEe--cCCCccceEECCCCCEEEE
Confidence 997 7788887777888999999 888 555 678889999999999999888886 4578999999999999998
Q ss_pred Ec---CCCcEEEEEcCCCCCcCee
Q psy10778 530 SN---TEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs---~Dg~V~vwdl~~~~~~~~~ 550 (556)
++ .++.|++||+.+++.+..+
T Consensus 217 ~~~~~~~~~v~~~d~~~~~~~~~~ 240 (391)
T 1l0q_A 217 TNVDKYFNTVSMIDTGTNKITARI 240 (391)
T ss_dssp EEECSSCCEEEEEETTTTEEEEEE
T ss_pred EecCcCCCcEEEEECCCCeEEEEE
Confidence 88 6899999999887655444
|
| >3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=8.3e-25 Score=246.82 Aligned_cols=205 Identities=19% Similarity=0.188 Sum_probs=179.1
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC--CCEEEEEcCCCc
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG--FSVAVSSSEDGT 398 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~--~~~l~sgs~Dg~ 398 (556)
.+|.+.|++++|+|++++|++|+.||+|++|++..+. ......+.+|.+.|++++|+++ ++.+++|+.||+
T Consensus 6 ~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~-------~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~ 78 (753)
T 3jro_A 6 NAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGET-------HKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGK 78 (753)
T ss_dssp --CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTE-------EEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSC
T ss_pred ccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCC-------CccceeccCCcCceEEEEecCCCCCCEEEEEeCCCe
Confidence 3899999999999999999999999999999997320 0445788999999999999988 899999999999
Q ss_pred EEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCC--CCeEEEEeecCcCCCCeEEEEEeCCc----EEEEeecCCCeEEE
Q psy10778 399 CLLWDINTIG--YIREIPCVDPNTPVSHVTMSET--NGEIASVLQTTKTGGSILRLHTINAQ----LITSLASELRITSV 470 (556)
Q Consensus 399 I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~--~~~i~s~s~~~~~~d~~I~iwdi~g~----~i~~~~~~~~i~~i 470 (556)
|++||+.+++ .+..+.. | ...|.+++|+|+ +..+++++ .|+.|++||++.. ......+...|.++
T Consensus 79 I~vwd~~~~~~~~~~~~~~-h-~~~V~~v~~sp~~~~~~l~sgs-----~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l 151 (753)
T 3jro_A 79 VLIWKEENGRWSQIAVHAV-H-SASVNSVQWAPHEYGPLLLVAS-----SDGKVSVVEFKENGTTSPIIIDAHAIGVNSA 151 (753)
T ss_dssp EEEEEEETTEEEEEEEECC-C-SSCEEEEEECCGGGCSEEEEEE-----TTSEEEEEECCSSSCCCCEEEECCSSCEEEE
T ss_pred EEEEECCCCcccccccccC-C-CCCeEEEEECCCCCCCEEEEEe-----CCCcEEEEEeecCCCcceeEeecCCCceEEE
Confidence 9999999886 6778888 8 899999999999 99999999 8999999999732 23333578899999
Q ss_pred EEeeCC-------------CCCcceEEEEEeCCCeEEEEeCCCC----eEEEEecCCCCCCeEEEEEecC---CCEEEEE
Q psy10778 471 TFSNAP-------------EGVSQNVIVTGHSDGTIQLWSGYKL----AHLLTLNTNVALPVIAVTYSCD---SQHLYAS 530 (556)
Q Consensus 471 ~~s~~p-------------dg~~~~~l~tg~~dg~I~iwd~~~~----~~~~~~~~~h~~~V~~l~~s~d---g~~l~sg 530 (556)
+|+ | ++ .++++|+.||.|++||++++ .....+. +|..+|++++|+|+ +++|++|
T Consensus 152 ~~~--p~~~~~~~~~~~~~d~---~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~-~h~~~V~~l~~sp~~~~~~~l~s~ 225 (753)
T 3jro_A 152 SWA--PATIEEDGEHNGTKES---RKFVTGGADNLVKIWKYNSDAQTYVLESTLE-GHSDWVRDVAWSPTVLLRSYLASV 225 (753)
T ss_dssp EEC--CCC---------CGGG---CCEEEEETTSCEEEEEEETTTTEEEEEEEEC-CCSSCEEEEEECCCCSSSEEEEEE
T ss_pred Eec--CcccccccccccCCCC---CEEEEEECCCeEEEEeccCCcccceeeeeec-CCCCcEEEEEeccCCCCCCEEEEE
Confidence 999 5 46 79999999999999999876 5566676 79999999999999 8999999
Q ss_pred cCCCcEEEEEcCCCC
Q psy10778 531 NTEGLVIIWESSSHN 545 (556)
Q Consensus 531 s~Dg~V~vwdl~~~~ 545 (556)
+.||.|++||+.++.
T Consensus 226 s~Dg~I~iwd~~~~~ 240 (753)
T 3jro_A 226 SQDRTCIIWTQDNEQ 240 (753)
T ss_dssp ESSSCEEEEEESSSS
T ss_pred ecCCEEEEecCCCCC
Confidence 999999999998853
|
| >2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.1e-24 Score=227.14 Aligned_cols=230 Identities=12% Similarity=0.075 Sum_probs=189.5
Q ss_pred eEEeccCCCeEEEEeCC--CCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSK--ELPATPVIRP-PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~--~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
++++|+.||.|++|++. +++....+.. .|...|++++|+|++++|++|+.||.|++|++....... .....+
T Consensus 117 l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~-----~~~~~~ 191 (450)
T 2vdu_B 117 LIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEK-----FTQEPI 191 (450)
T ss_dssp EEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSS-----CCCCCS
T ss_pred EEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccccc-----ccceee
Confidence 45899999999999998 7776666542 467899999999999999999999999999987651110 133467
Q ss_pred eCCCccEEEEEEccC---CCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 372 LGHSACVTDLYLCAG---FSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~---~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
.+|...|++++|+|+ +++|++|+.|++|++||+.+++.+.. +.+ | ...|.+++|+ ++.+|++++ .|+.
T Consensus 192 ~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~-h-~~~v~~~~~s-d~~~l~s~~-----~d~~ 263 (450)
T 2vdu_B 192 LGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFG-H-KHFVSSICCG-KDYLLLSAG-----GDDK 263 (450)
T ss_dssp EECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCC-C-SSCEEEEEEC-STTEEEEEE-----SSSE
T ss_pred ecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecC-C-CCceEEEEEC-CCCEEEEEe-----CCCe
Confidence 899999999999999 99999999999999999999988877 556 8 8999999999 999999999 8999
Q ss_pred EEEEEeC-CcEEEEeec--------------------------CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeC-
Q psy10778 448 LRLHTIN-AQLITSLAS--------------------------ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSG- 498 (556)
Q Consensus 448 I~iwdi~-g~~i~~~~~--------------------------~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~- 498 (556)
|++||++ ++.+..+.. ...+.+++|+ |++ ++|++++ .++.|++|++
T Consensus 264 v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~--~~~---~~l~~~~~~d~~i~iw~~~ 338 (450)
T 2vdu_B 264 IFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDIIEFAVSKIIKS--KNL---PFVAFFVEATKCIIILEMS 338 (450)
T ss_dssp EEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------CBCCCEEEEEEC--SSS---SEEEEEETTCSEEEEEEEC
T ss_pred EEEEECCCCcEeeeecchhhhhhhhhhcccccccccccccccceEEEEEEEEe--CCC---CEEEEEECCCCeEEEEEec
Confidence 9999997 777776642 2468999999 888 8898888 8999999999
Q ss_pred -CCC---eEEEEecCCCCCCeEEEEEecCCCEEEEEcC------CCcEEEEEcCCC
Q psy10778 499 -YKL---AHLLTLNTNVALPVIAVTYSCDSQHLYASNT------EGLVIIWESSSH 544 (556)
Q Consensus 499 -~~~---~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~------Dg~V~vwdl~~~ 544 (556)
.++ +.+..+. .+ ..|.+++|+|++.++++++. +..|.+|.+...
T Consensus 339 ~~~~~~l~~~~~~~-~~-~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~ 392 (450)
T 2vdu_B 339 EKQKGDLALKQIIT-FP-YNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLN 392 (450)
T ss_dssp SSSTTCEEEEEEEE-CS-SCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETT
T ss_pred cCCCCceeeccEec-cC-CceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcC
Confidence 555 6777777 55 88999999996543433333 456889987653
|
| >1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A | Back alignment and structure |
|---|
Probab=99.93 E-value=2.1e-24 Score=218.22 Aligned_cols=225 Identities=10% Similarity=0.018 Sum_probs=184.0
Q ss_pred eEEeccCCCeEEEEeC-CCCCCcceEcCC--CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMS-KELPATPVIRPP--LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~-~~~~~~~~~~~~--h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
++++|+.||.|++|++ .+++. ..+ .+ |...|++++|+| ++.|++|+.||.|++||+............+++..+
T Consensus 71 ~l~~~~~dg~i~~wd~~~~~~~-~~~-~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 147 (342)
T 1yfq_A 71 QIYVGTVQGEILKVDLIGSPSF-QAL-TNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNT 147 (342)
T ss_dssp EEEEEETTSCEEEECSSSSSSE-EEC-BSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSS
T ss_pred EEEEEcCCCeEEEEEeccCCce-Eec-cccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEE
Confidence 6889999999999999 77654 233 36 999999999999 999999999999999998861000000000344445
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC-Ce--EEEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCe
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-IG--YIREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-~~--~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~ 447 (556)
. |...|.+++|++++ +++++.||.|++||+++ +. ....... | ...+.+++|+| ++..+++++ .++.
T Consensus 148 ~-~~~~v~~~~~~~~~--l~~~~~d~~i~i~d~~~~~~~~~~~~~~~-~-~~~i~~i~~~~~~~~~l~~~~-----~dg~ 217 (342)
T 1yfq_A 148 K-VKNKIFTMDTNSSR--LIVGMNNSQVQWFRLPLCEDDNGTIEESG-L-KYQIRDVALLPKEQEGYACSS-----IDGR 217 (342)
T ss_dssp S-SCCCEEEEEECSSE--EEEEESTTEEEEEESSCCTTCCCEEEECS-C-SSCEEEEEECSGGGCEEEEEE-----TTSE
T ss_pred e-eCCceEEEEecCCc--EEEEeCCCeEEEEECCccccccceeeecC-C-CCceeEEEECCCCCCEEEEEe-----cCCc
Confidence 5 88999999999887 99999999999999998 54 3334444 6 78999999999 999999999 8999
Q ss_pred EEEEEeC-C------cEEEEee-cC---------CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q psy10778 448 LRLHTIN-A------QLITSLA-SE---------LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN 510 (556)
Q Consensus 448 I~iwdi~-g------~~i~~~~-~~---------~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 510 (556)
|++|+++ + +....+. +. ..|.+++|+ |++ ++|++|+.||.|++||+.+++.+..+. +
T Consensus 218 i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~---~~l~~~~~dg~i~vwd~~~~~~~~~~~-~ 291 (342)
T 1yfq_A 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS--PRH---KFLYTAGSDGIISCWNLQTRKKIKNFA-K 291 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC--TTT---CCEEEEETTSCEEEEETTTTEEEEECC-C
T ss_pred EEEEEEcCCCcccccccceeeecccccccccccceeEEEEEEc--CCC---CEEEEecCCceEEEEcCccHhHhhhhh-c
Confidence 9999996 3 4455553 33 389999999 888 899999999999999999999999998 6
Q ss_pred C-CCCeEEEEEecCCCEEEEEcCCCc-EEEEE
Q psy10778 511 V-ALPVIAVTYSCDSQHLYASNTEGL-VIIWE 540 (556)
Q Consensus 511 h-~~~V~~l~~s~dg~~l~sgs~Dg~-V~vwd 540 (556)
| ..+|++++ |++++|++++.||. .+.|.
T Consensus 292 ~h~~~v~~~~--~~~~~l~s~s~Dg~~~~~~~ 321 (342)
T 1yfq_A 292 FNEDSVVKIA--CSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp CSSSEEEEEE--ECSSEEEEEEECTHHHHCSS
T ss_pred ccCCCceEec--CCCCeEEEEecCCccccccc
Confidence 7 99999999 99999999999998 54444
|
| >2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B | Back alignment and structure |
|---|
Probab=99.93 E-value=5.6e-25 Score=231.68 Aligned_cols=229 Identities=20% Similarity=0.243 Sum_probs=180.0
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCccc-ccccCCCeEeeCCCccEEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNK-IEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~-~~~~~~~~~l~~h~~~V~~ 380 (556)
+.+..+...+++........|.+.|++++|+|+ +.+|++|+.||.|++|++........ .....+...+.+|...|++
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~ 186 (430)
T 2xyi_A 107 GEFGGFGSVCGKIEIEIKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYG 186 (430)
T ss_dssp -----------CEEEEEEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCC
T ss_pred cccccccCCCCceEEEEEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEE
Confidence 333333333444433334479999999999997 78999999999999999976311110 0112567889999999999
Q ss_pred EEEccCCC-EEEEEcCCCcEEEEeCCCCeE-------EEEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCeEEEE
Q psy10778 381 LYLCAGFS-VAVSSSEDGTCLLWDINTIGY-------IREIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 381 l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~-------v~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I~iw 451 (556)
++|+|++. +|++|+.||+|++||+.++.. ...+.. | ...|.+++|+| ++..+++++ .++.|++|
T Consensus 187 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~-h-~~~v~~v~~~p~~~~~l~s~~-----~dg~i~i~ 259 (430)
T 2xyi_A 187 LSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTG-H-TAVVEDVAWHLLHESLFGSVA-----DDQKLMIW 259 (430)
T ss_dssp EEECTTSTTEEEEECTTSCEEEEETTSCCBGGGEEECSEEECC-C-SSCEEEEEECSSCTTEEEEEE-----TTSEEEEE
T ss_pred EEeCCCCCCeEEEEeCCCeEEEEeCCCCCCCCceeccceeecC-C-CCCEeeeEEeCCCCCEEEEEe-----CCCeEEEE
Confidence 99999998 999999999999999987321 456667 8 89999999999 567788888 89999999
Q ss_pred EeC-C---cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-CeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 452 TIN-A---QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 452 di~-g---~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
|++ + +.+..+ .|...|++++|+ |++. .++++|+.||.|++||+++ .+.+..+. .|...|++++|+|+++
T Consensus 260 d~~~~~~~~~~~~~~~~~~~v~~i~~~--p~~~--~~l~tg~~dg~v~vwd~~~~~~~~~~~~-~h~~~v~~i~~sp~~~ 334 (430)
T 2xyi_A 260 DTRNNNTSKPSHTVDAHTAEVNCLSFN--PYSE--FILATGSADKTVALWDLRNLKLKLHSFE-SHKDEIFQVQWSPHNE 334 (430)
T ss_dssp ETTCSCSSSCSEEEECCSSCEEEEEEC--SSCT--TEEEEEETTSEEEEEETTCTTSCSEEEE-CCSSCEEEEEECSSCT
T ss_pred ECCCCCCCcceeEeecCCCCeEEEEeC--CCCC--CEEEEEeCCCeEEEEeCCCCCCCeEEee-cCCCCEEEEEECCCCC
Confidence 997 3 355555 578899999999 7762 4799999999999999987 56677887 7899999999999984
Q ss_pred -EEEEEcCCCcEEEEEcCC
Q psy10778 526 -HLYASNTEGLVIIWESSS 543 (556)
Q Consensus 526 -~l~sgs~Dg~V~vwdl~~ 543 (556)
+|++++.||.|++||+..
T Consensus 335 ~~l~s~~~d~~i~iwd~~~ 353 (430)
T 2xyi_A 335 TILASSGTDRRLHVWDLSK 353 (430)
T ss_dssp TEEEEEETTSCCEEEEGGG
T ss_pred CEEEEEeCCCcEEEEeCCC
Confidence 799999999999999987
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.9e-23 Score=219.01 Aligned_cols=240 Identities=11% Similarity=0.011 Sum_probs=200.8
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEc----CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIR----PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~----~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
.+++.++.|+.|++||..+++...... .+|...|.+++|+++++++++++.|+.|++||+..+ +.+.
T Consensus 135 ~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~---------~~~~ 205 (433)
T 3bws_A 135 RLAIPLLEDEGMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQANAVHVFDLKTL---------AYKA 205 (433)
T ss_dssp EEEEEBTTSSSEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTC---------CEEE
T ss_pred eEEEEeCCCCeEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCc---------eEEE
Confidence 378888899999999999887665322 268889999999999999999999999999998765 4556
Q ss_pred EeeCCCccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc---CCC
Q psy10778 370 ILLGHSACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK---TGG 445 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~---~~d 445 (556)
.+..|...+.+++|+|+++.+ ++++.|+.|++||+++++.+..+.. ...+.+++|+|+++.+++++.... ..+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~~~~~~~~~d 282 (433)
T 3bws_A 206 TVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDK---IGLPRGLLLSKDGKELYIAQFSASNQESGG 282 (433)
T ss_dssp EEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCC---CSEEEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred EEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecC---CCCceEEEEcCCCCEEEEEECCCCccccCC
Confidence 778899999999999999977 5666899999999999999888887 467999999999999988873211 027
Q ss_pred CeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 446 SILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
+.|++||++ ++.+....+...+.+++|+ |++. .++++++.++.|++||+.+++.+..+. +...+.+++|+|++
T Consensus 283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~--~~g~--~l~~~~~~~~~v~v~d~~~~~~~~~~~--~~~~~~~~~~s~dg 356 (433)
T 3bws_A 283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSG--NTEN--KIYVSDMCCSKIEVYDLKEKKVQKSIP--VFDKPNTIALSPDG 356 (433)
T ss_dssp EEEEEEETTTTEEEEEEEEEECEEEEEEC--SSTT--EEEEEETTTTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTS
T ss_pred CeEEEEECCCCcEEeeccCCCCcceEEEC--CCCC--EEEEEecCCCEEEEEECCCCcEEEEec--CCCCCCeEEEcCCC
Confidence 899999997 7777777777789999999 7872 356777899999999999999888886 56889999999999
Q ss_pred CEEEEEcC---------------CCcEEEEEcCCCCCcCeee
Q psy10778 525 QHLYASNT---------------EGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 525 ~~l~sgs~---------------Dg~V~vwdl~~~~~~~~~~ 551 (556)
+.+++++. ||.|++||+.+++.+..+.
T Consensus 357 ~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~ 398 (433)
T 3bws_A 357 KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE 398 (433)
T ss_dssp SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE
T ss_pred CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec
Confidence 99888876 5799999998876655443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.3e-24 Score=246.09 Aligned_cols=245 Identities=12% Similarity=0.088 Sum_probs=191.5
Q ss_pred cceEEeccCCCeEEEEeCCCCCCcc--eEc--------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccc-
Q psy10778 293 AGMICWNECDNLIRLKMSKELPATP--VIR--------PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNK- 361 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~~~~--~~~--------~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~- 361 (556)
..++++|+.|++|++||..++.... .+. .+|...|++++|+|+|++||+|+.||+|+||++.++...+.
T Consensus 447 g~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~lwd~~~~~~~~~~ 526 (902)
T 2oaj_A 447 GTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVVLFKYEVNQFYSVE 526 (902)
T ss_dssp EEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEEEEEEEECCC----
T ss_pred CcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEEEEEecCccccCcc
Confidence 3489999999999999998875321 111 16889999999999999999999999999999987621000
Q ss_pred ------c-----------------------------cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 362 ------I-----------------------------EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 362 ------~-----------------------------~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
. ...+++..+.+|.+.|++++|+|+| +||+|+.||+|++||+++
T Consensus 527 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsgs~D~tv~lwd~~~ 605 (902)
T 2oaj_A 527 NRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIAYAAGSLMLIDRRG 605 (902)
T ss_dssp -----------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEEETTSEEEEEETTT
T ss_pred ccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEEeCCCcEEEEECCC
Confidence 0 0002356788999999999999999 999999999999999988
Q ss_pred CeEEE--E---eC-CCCCCCCeeEEEEe-----CCC---CeEEEEeecCcCCCCeEEEEEe----CCcEEEEee------
Q psy10778 407 IGYIR--E---IP-CVDPNTPVSHVTMS-----ETN---GEIASVLQTTKTGGSILRLHTI----NAQLITSLA------ 462 (556)
Q Consensus 407 ~~~v~--~---l~-~~h~~~~V~~l~~s-----p~~---~~i~s~s~~~~~~d~~I~iwdi----~g~~i~~~~------ 462 (556)
+..+. . +. + | ...|++++|+ ||| ..|++++ .|++|++||+ +|+....+.
T Consensus 606 ~~~~~~~~~~~~~~g-h-~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs-----~D~tv~~wd~~p~~~g~~~~~~~~~~~~~ 678 (902)
T 2oaj_A 606 PAIIYMENIREISGA-Q-SACVTCIEFVIMEYGDDGYSSILMVCGT-----DMGEVITYKILPASGGKFDVQLMDITNVT 678 (902)
T ss_dssp TEEEEEEEGGGTCSS-C-CCCEEEEEEEEEECTTSSSEEEEEEEEE-----TTSEEEEEEEEECGGGCEEEEEEEEEECC
T ss_pred CeEEEEeehhHhccc-c-ccceEEEEEEEEecCCCCCcceEEEEEe-----cCCcEEEEEEecCCCCcEEEEecCceecC
Confidence 76654 2 32 6 8 8899999999 885 7999999 8999999998 377665552
Q ss_pred cCCCeEEEE-EeeC--------------------CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEE---
Q psy10778 463 SELRITSVT-FSNA--------------------PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAV--- 518 (556)
Q Consensus 463 ~~~~i~~i~-~s~~--------------------pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l--- 518 (556)
+.+.|.+++ |+.. +++ .+|+++ +..|++|++.++++.+... .|...+.++
T Consensus 679 ~~~~v~~i~~~~~~~~~~~~a~~~~~~~l~~~~~~~~---~~l~~~--~~~ir~~~~~~~k~~~k~~-~~~~~~~~v~~~ 752 (902)
T 2oaj_A 679 SKGPIHKIDAFSKETKSSCLATIPKMQNLSKGLCIPG---IVLITG--FDDIRLITLGKSKSTHKGF-KYPLAATGLSYI 752 (902)
T ss_dssp SSCCCCEEEEEETTTCCBCBCBHHHHHGGGGTCCCCE---EEEEEC--SSEEEEECTTCCCEEEEEC-SSCEEEEEEEEE
T ss_pred CCCceEEEEeEecCCCCcccCCHHHHhccCCCCCCCe---EEEEEe--ccceEEEeCccccceeeEc-ccceeeeEEEEE
Confidence 246777776 5410 233 333333 7799999999999988775 566667776
Q ss_pred E------EecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 519 T------YSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 519 ~------~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
. +++++..|++++.||.|++|++++.+++..+.
T Consensus 753 ~~~~~~~~~~~~~~l~~~~~~g~i~~~s~p~l~~~~~~~ 791 (902)
T 2oaj_A 753 STVEKNNDRKNLTVIITLEINGHLRVFTIPDFKEQMSEH 791 (902)
T ss_dssp EEECSSSCEEEEEEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred EeccccccccCceEEEEEeCCCcEEEEECcchHHHhhcc
Confidence 5 68889999999999999999999988765543
|
| >4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A | Back alignment and structure |
|---|
Probab=99.93 E-value=1.2e-24 Score=224.30 Aligned_cols=240 Identities=10% Similarity=0.067 Sum_probs=177.1
Q ss_pred eEEeccC-------CCeEEEEeCCCCCCcc---------eEcCCCCCceEEEEEcCCCCEEEEEe-----------CCCc
Q psy10778 295 MICWNEC-------DNLIRLKMSKELPATP---------VIRPPLGATIATATTAPDCHTLWLGL-----------TSGN 347 (556)
Q Consensus 295 ~l~~gs~-------Dg~I~lw~~~~~~~~~---------~~~~~h~~~V~~i~~s~dg~~l~tgs-----------~Dg~ 347 (556)
+|++|+. |+.|++|++..+.... .....|.+.|++++++ ++.+++|. .|++
T Consensus 28 ~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~~~--~~~~~~g~~~~~~~l~s~~~d~~ 105 (365)
T 4h5i_A 28 LLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAIDAS--KGIILVGCNENSTKITQGKGNKH 105 (365)
T ss_dssp EEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEEEE--TTEEEEECCCCHHHHHHTSCCCC
T ss_pred EEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEEeC--CCEEEEEECCCccEEEEecCCCc
Confidence 6666654 3469999987553321 1122677889888765 45677664 5678
Q ss_pred EEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEE--EcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEE
Q psy10778 348 ILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVS--SSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425 (556)
Q Consensus 348 I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s--gs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l 425 (556)
+++|++....................+...+.+++|+|||+++++ ++.|++|+|||+.+++.+..+.. ...|.++
T Consensus 106 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~---~~~V~~v 182 (365)
T 4h5i_A 106 LRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIET---RGEVKDL 182 (365)
T ss_dssp EEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEEC---SSCCCEE
T ss_pred EEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCC---CCceEEE
Confidence 999998765221111111111223345567999999999998764 45799999999999999998875 6889999
Q ss_pred EEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe---ecCCCeEEEEEeeCCCCCcceEEEEEeCCC----eEEEEeC
Q psy10778 426 TMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL---ASELRITSVTFSNAPEGVSQNVIVTGHSDG----TIQLWSG 498 (556)
Q Consensus 426 ~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~---~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg----~I~iwd~ 498 (556)
+|+|+|+++++++ .++.+.+|...++.+... .+...+.+++|+ |++ ..+++++.|+ .+++|++
T Consensus 183 ~fspdg~~l~s~s-----~~~~~~~~~~~~~~~~~~~~~~~~~~v~~v~fs--pdg---~~l~~~s~d~~~~~~i~~~~~ 252 (365)
T 4h5i_A 183 HFSTDGKVVAYIT-----GSSLEVISTVTGSCIARKTDFDKNWSLSKINFI--ADD---TVLIAASLKKGKGIVLTKISI 252 (365)
T ss_dssp EECTTSSEEEEEC-----SSCEEEEETTTCCEEEEECCCCTTEEEEEEEEE--ETT---EEEEEEEESSSCCEEEEEEEE
T ss_pred EEccCCceEEecc-----ceeEEEEEeccCcceeeeecCCCCCCEEEEEEc--CCC---CEEEEEecCCcceeEEeeccc
Confidence 9999999999987 454444444457665443 356789999999 889 8999998877 6888998
Q ss_pred CCCeE----EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 499 YKLAH----LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 499 ~~~~~----~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
..... ...+. +|..+|++++|+|||++|++|+.||.|+|||+.+++.+..+
T Consensus 253 ~~~~~~~~~~~~~~-~~~~~V~~~~~Spdg~~lasgs~D~~V~iwd~~~~~~~~~~ 307 (365)
T 4h5i_A 253 KSGNTSVLRSKQVT-NRFKGITSMDVDMKGELAVLASNDNSIALVKLKDLSMSKIF 307 (365)
T ss_dssp ETTEEEEEEEEEEE-SSCSCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred ccceecceeeeeec-CCCCCeEeEEECCCCCceEEEcCCCEEEEEECCCCcEEEEe
Confidence 76553 33455 78899999999999999999999999999999997766554
|
| >1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3 | Back alignment and structure |
|---|
Probab=99.93 E-value=4.8e-23 Score=212.82 Aligned_cols=229 Identities=11% Similarity=0.111 Sum_probs=190.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+++.++.|+.|++||..+++....+. +...+.+++|+|++++|+++ +.++.|++||+.++ +.+..+..
T Consensus 46 l~~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~---------~~~~~~~~ 114 (391)
T 1l0q_A 46 VYVANAHSNDVSIIDTATNNVIATVP--AGSSPQGVAVSPDGKQVYVTNMASSTLSVIDTTSN---------TVAGTVKT 114 (391)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEEEEE--CSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEEC
T ss_pred EEEECCCCCeEEEEECCCCeEEEEEE--CCCCccceEECCCCCEEEEEECCCCEEEEEECCCC---------eEEEEEeC
Confidence 55788899999999999888777665 33489999999999988654 56799999998865 33344444
Q ss_pred CCccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE-EEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA-SVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~-s~s~~~~~~d~~I~iw 451 (556)
...+.+++|+|+++.+ ++++.|+.|++||+.+++.+..+.. ...+..++|+|+++.++ +++ .++.|++|
T Consensus 115 -~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~---~~~~~~~~~~~dg~~l~~~~~-----~~~~v~~~ 185 (391)
T 1l0q_A 115 -GKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSV---GRSPKGIAVTPDGTKVYVANF-----DSMSISVI 185 (391)
T ss_dssp -SSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---CSSEEEEEECTTSSEEEEEET-----TTTEEEEE
T ss_pred -CCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEec---CCCcceEEECCCCCEEEEEeC-----CCCEEEEE
Confidence 4578999999999976 7888999999999999999998887 46789999999999885 444 78999999
Q ss_pred EeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe---CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 452 TIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 452 di~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
|++ ++.+..+.+...+.+++|+ |++ +.|++++ .++.|++||+.+++.+..+. .+ ..+.+++|+|+++.|
T Consensus 186 d~~~~~~~~~~~~~~~~~~~~~~--~~g---~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~-~~-~~~~~~~~s~dg~~l 258 (391)
T 1l0q_A 186 DTVTNSVIDTVKVEAAPSGIAVN--PEG---TKAYVTNVDKYFNTVSMIDTGTNKITARIP-VG-PDPAGIAVTPDGKKV 258 (391)
T ss_dssp ETTTTEEEEEEECSSEEEEEEEC--TTS---SEEEEEEECSSCCEEEEEETTTTEEEEEEE-CC-SSEEEEEECTTSSEE
T ss_pred ECCCCeEEEEEecCCCccceEEC--CCC---CEEEEEecCcCCCcEEEEECCCCeEEEEEe-cC-CCccEEEEccCCCEE
Confidence 997 6777777788899999999 888 7787777 68999999999999998887 44 468999999999877
Q ss_pred -EEEcCCCcEEEEEcCCCCCcCee
Q psy10778 528 -YASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 528 -~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
++++.|+.|++||+.+++.+..+
T Consensus 259 ~~s~~~d~~v~v~d~~~~~~~~~~ 282 (391)
T 1l0q_A 259 YVALSFXNTVSVIDTATNTITATM 282 (391)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEE
T ss_pred EEEcCCCCEEEEEECCCCcEEEEE
Confidence 67788999999999987655443
|
| >2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=2.2e-24 Score=247.62 Aligned_cols=202 Identities=12% Similarity=0.149 Sum_probs=173.9
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
.+|.+.|++++|+|++++||+|+.||+|+||+.... +. .....|...|.+++|+| +++|++++.|++|+
T Consensus 14 ~gh~~~V~~lafspdg~~lAsgs~Dg~I~lw~~~~~---------~~-~~~~~~~~~V~~l~fsp-g~~L~S~s~D~~v~ 82 (902)
T 2oaj_A 14 YGMSSKPIAAAFDFTQNLLAIATVTGEVHIYGQQQV---------EV-VIKLEDRSAIKEMRFVK-GIYLVVINAKDTVY 82 (902)
T ss_dssp EECSSCEEEEEEETTTTEEEEEETTSEEEEECSTTC---------EE-EEECSSCCCEEEEEEET-TTEEEEEETTCEEE
T ss_pred cCCCCCcEEEEECCCCCEEEEEeCCCEEEEEeCCCc---------EE-EEEcCCCCCEEEEEEcC-CCEEEEEECcCeEE
Confidence 378999999999999999999999999999987543 11 22235788999999999 88999999999999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe-------------ecCCCe
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL-------------ASELRI 467 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~-------------~~~~~i 467 (556)
+||+.+++.+..+.. ...|++++|+|++.++++++ .++.|++||+++..+..+ .|.+.|
T Consensus 83 lWd~~~~~~~~~~~~---~~~V~~v~~sp~g~~l~sgs-----~dg~V~lwd~~~~~~~~~~i~~~~~~~~~~~~h~~~V 154 (902)
T 2oaj_A 83 VLSLYSQKVLTTVFV---PGKITSIDTDASLDWMLIGL-----QNGSMIVYDIDRDQLSSFKLDNLQKSSFFPAARLSPI 154 (902)
T ss_dssp EEETTTCSEEEEEEC---SSCEEEEECCTTCSEEEEEE-----TTSCEEEEETTTTEEEEEEECCHHHHHTCSSSCCCCC
T ss_pred EEECCCCcEEEEEcC---CCCEEEEEECCCCCEEEEEc-----CCCcEEEEECCCCccccceeccccccccccccCCCCe
Confidence 999999999988865 68899999999999999999 899999999984433211 256799
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC------------------CCCeEEEEEecCCCEEEE
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV------------------ALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h------------------~~~V~~l~~s~dg~~l~s 529 (556)
.+++|+ |++. ..+++|+.||.| +||+.+++.+..+. .| ...|++++|+|+|++|++
T Consensus 155 ~sl~~s--p~~~--~~l~~g~~dg~v-lWd~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~las 228 (902)
T 2oaj_A 155 VSIQWN--PRDI--GTVLISYEYVTL-TYSLVENEIKQSFI-YELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIIT 228 (902)
T ss_dssp CEEEEE--TTEE--EEEEEECSSCEE-EEETTTTEEEEEEC-CCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEE
T ss_pred EEEEEc--cCCC--CEEEEEeCCCcE-EEECCCCceEEEEe-cccCCcCCCcccccccccccCCCeEEEEEcCCCCEEEE
Confidence 999999 7531 689999999999 99999999988886 33 477999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCc
Q psy10778 530 SNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~ 547 (556)
|+.||.|++||+++++.+
T Consensus 229 gs~Dg~i~lWd~~~g~~~ 246 (902)
T 2oaj_A 229 IHEDNSLVFWDANSGHMI 246 (902)
T ss_dssp EETTCCEEEEETTTCCEE
T ss_pred EECCCeEEEEECCCCcEE
Confidence 999999999999886543
|
| >3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.6e-24 Score=219.35 Aligned_cols=222 Identities=10% Similarity=0.030 Sum_probs=173.4
Q ss_pred EEeccCCCeEEEEeCC---------CCCCcceEcCCCCCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccc
Q psy10778 296 ICWNECDNLIRLKMSK---------ELPATPVIRPPLGATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~---------~~~~~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
+++|+.|++|++|+.. +++........|.+.|.+++|+| +++++++|+.||+|++||+..+
T Consensus 88 ~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~-------- 159 (343)
T 3lrv_A 88 IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDD-------- 159 (343)
T ss_dssp EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEEEESSSS--------
T ss_pred eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCC--------
Confidence 8889999999999665 44445555557888999999999 9999999999999999999865
Q ss_pred cCCCeEe-eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 365 CKPPTIL-LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI-REIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 365 ~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+..... ..|...|++++|+|++.++++|+.||.|++||+++++.+ ..+...| ..+|++++|+|++.+|++++
T Consensus 160 -~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h-~~~v~~l~fs~~g~~l~s~~---- 233 (343)
T 3lrv_A 160 -SQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDE-EAKIKEVKFADNGYWMVVEC---- 233 (343)
T ss_dssp -CEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCT-TSCEEEEEECTTSSEEEEEE----
T ss_pred -cEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccC-CCCEEEEEEeCCCCEEEEEe----
Confidence 233333 345668999999999999999999999999999998877 6665437 89999999999999999998
Q ss_pred CCCCeEEEEEeC-CcEEEEee----cCCCe--EEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCCCCeEEEEecCCCCCC
Q psy10778 443 TGGSILRLHTIN-AQLITSLA----SELRI--TSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGYKLAHLLTLNTNVALP 514 (556)
Q Consensus 443 ~~d~~I~iwdi~-g~~i~~~~----~~~~i--~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~~~~~~~~~~~~h~~~ 514 (556)
.+ .|++||++ ++.+..+. +...+ .+++|+ |+| ++|++++. |+.|++|++......... .+
T Consensus 234 -~~-~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~l~~~s~~d~~i~v~~~~~~~~~~~~-----~~ 301 (343)
T 3lrv_A 234 -DQ-TVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDID--DSG---KNMIAYSNESNSLTIYKFDKKTKNWTK-----DE 301 (343)
T ss_dssp -SS-BEEEEETTSSTTCBSSCCCBC-----CCEEEEEC--TTS---SEEEEEETTTTEEEEEEECTTTCSEEE-----EE
T ss_pred -CC-eEEEEEcCCCCcceeecccccccccccceEEEEC--CCC---CEEEEecCCCCcEEEEEEcccccceEe-----cC
Confidence 45 99999997 44333322 11222 479999 899 89999988 999999998655432222 45
Q ss_pred eEEEEEec---CCCEEEEEcCCCcEEEEEcCC
Q psy10778 515 VIAVTYSC---DSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 515 V~~l~~s~---dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..++|++ +.+.+++++.||.+.++-...
T Consensus 302 ~~~~~~~~~~~~~~~l~~~~~d~~~~~~~~~~ 333 (343)
T 3lrv_A 302 ESALCLQSDTADFTDMDVVCGDGGIAAILKTN 333 (343)
T ss_dssp EEECCC----CCCCEEEEEEETTEEEEEEECS
T ss_pred ceeEecCccccccceeEEEecCCceEEEEecC
Confidence 77888888 888999999999998886543
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=6.8e-23 Score=210.22 Aligned_cols=222 Identities=9% Similarity=0.113 Sum_probs=173.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.|+.|++|++||..+++.+..+. |...|.+++++++ .++++. |+.|++||+.... +.+..+..
T Consensus 73 ~~~~~~~d~~v~iWd~~~~~~~~~~~--~~~~v~~v~~~~~--~~~~~~-~~~i~i~d~~~~~--------~~~~~~~~- 138 (355)
T 3vu4_A 73 VAFVTGVKEVVHIWDDVKKQDVSRIK--VDAPVKDLFLSRE--FIVVSY-GDVISVFKFGNPW--------KRITDDIR- 138 (355)
T ss_dssp EEEECSSTTEEEEEETTTTEEEEEEE--CSSCEEEEEECSS--EEEEEE-TTEEEEEESSTTC--------CBSSCCEE-
T ss_pred EEEEECCccEEEEEECCCCcEEEEEE--CCCceEEEEEcCC--EEEEEE-cCEEEEEECCCCc--------eeeEEecc-
Confidence 55678889999999999887776664 6779999999876 344444 7899999987541 11222222
Q ss_pred CccEEEEEEccCCCEEEE--EcCCCcEEEEeCCCCe----------------EEEEeCCCCCCCCeeEEEEeCCCCeEEE
Q psy10778 375 SACVTDLYLCAGFSVAVS--SSEDGTCLLWDINTIG----------------YIREIPCVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~s--gs~Dg~I~iwdl~~~~----------------~v~~l~~~h~~~~V~~l~~sp~~~~i~s 436 (556)
+...+++++ ..++. |+.||.|++||+.+++ .+..+.+ | ...|.+++|+|++.+|++
T Consensus 139 --~~~~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~-h-~~~v~~~~~s~~g~~l~s 212 (355)
T 3vu4_A 139 --FGGVCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKA-H-TNPIKMVRLNRKSDMVAT 212 (355)
T ss_dssp --EEEEEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECC-C-SSCEEEEEECTTSSEEEE
T ss_pred --CCceEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEc-c-CCceEEEEECCCCCEEEE
Confidence 444556666 55555 6899999999999865 2678888 9 999999999999999999
Q ss_pred EeecCcCCCCe-EEEEEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE--EEE---
Q psy10778 437 VLQTTKTGGSI-LRLHTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH--LLT--- 506 (556)
Q Consensus 437 ~s~~~~~~d~~-I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~--~~~--- 506 (556)
++ .|++ |++||++ ++.+..+. |...|.+++|+ |+| ++|++|+.|++|++||+..... ...
T Consensus 213 ~s-----~d~~~v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s--~~~---~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~ 282 (355)
T 3vu4_A 213 CS-----QDGTIIRVFKTEDGVLVREFRRGLDRADVVDMKWS--TDG---SKLAVVSDKWTLHVFEIFNDQDNKRHALKG 282 (355)
T ss_dssp EE-----TTCSEEEEEETTTCCEEEEEECTTCCSCEEEEEEC--TTS---CEEEEEETTCEEEEEESSCCSCCCSEETTT
T ss_pred Ee-----CCCCEEEEEECCCCcEEEEEEcCCCCCcEEEEEEC--CCC---CEEEEEECCCEEEEEEccCCCCcccccccc
Confidence 99 8998 9999997 88888886 78899999999 899 8999999999999999965431 111
Q ss_pred -----------------ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 507 -----------------LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 507 -----------------~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+..........++|+++++.|++++.||.+++|++..++.
T Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~~~ 339 (355)
T 3vu4_A 283 WINMKYFQSEWSLCNFKLSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFDDE 339 (355)
T ss_dssp TEECCCCCCSSCSEEEECCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEETT
T ss_pred eeeccccccccceeEEEeccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcCCC
Confidence 1111223346799999999999999999999999877443
|
| >3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A | Back alignment and structure |
|---|
Probab=99.92 E-value=1.4e-23 Score=215.35 Aligned_cols=201 Identities=12% Similarity=0.148 Sum_probs=160.6
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEE-EEEcCCCcEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVA-VSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~ 400 (556)
.|.+.|++++|+|||++|++|+.+| +++|+.... +. ....+...+..+++.++++.+ ++|+.|++|+
T Consensus 17 ~h~~~V~~v~fs~dg~~la~g~~~~-~~iw~~~~~---------~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~ 84 (355)
T 3vu4_A 17 HVSNPVTDYEFNQDQSCLILSTLKS-FEIYNVHPV---------AH--IMSQEMRHLSKVRMLHRTNYVAFVTGVKEVVH 84 (355)
T ss_dssp --CCCCCEEEECTTSSEEEEECSSE-EEEEEETTE---------EE--EEEEECSCCCEEEECTTSSEEEEECSSTTEEE
T ss_pred cCCCceEEEEECCCCCEEEEEcCCE-EEEEecCCc---------ce--eeeeecCCeEEEEEcCCCCEEEEEECCccEEE
Confidence 6899999999999999999998775 789997654 11 122222357788888888876 5678889999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCC-----------------------------------CeEEEEeecCcCCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETN-----------------------------------GEIASVLQTTKTGG 445 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~-----------------------------------~~i~s~s~~~~~~d 445 (556)
+||+.+++.+..+.. ...|.+++++++. ..+++++ +..+
T Consensus 85 iWd~~~~~~~~~~~~---~~~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~~~~~~s~~~la~~s---g~~~ 158 (355)
T 3vu4_A 85 IWDDVKKQDVSRIKV---DAPVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFGGVCEFSNGLLVYSN---EFNL 158 (355)
T ss_dssp EEETTTTEEEEEEEC---SSCEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEEEEEEEETTEEEEEE---SSCT
T ss_pred EEECCCCcEEEEEEC---CCceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCCceEEEEccEEEEeC---CCcC
Confidence 999999999998876 5789999888752 1233320 1178
Q ss_pred CeEEEEEeCC-c---------------E-EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCe-EEEEeCCCCeEEEE
Q psy10778 446 SILRLHTINA-Q---------------L-ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGT-IQLWSGYKLAHLLT 506 (556)
Q Consensus 446 ~~I~iwdi~g-~---------------~-i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~-I~iwd~~~~~~~~~ 506 (556)
|.|++||++. + + +..+ .|...|.+++|+ |+| ++|++|+.||+ |++||+.+++.+..
T Consensus 159 g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s--~~g---~~l~s~s~d~~~v~iwd~~~~~~~~~ 233 (355)
T 3vu4_A 159 GQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLN--RKS---DMVATCSQDGTIIRVFKTEDGVLVRE 233 (355)
T ss_dssp TCEEEEECCC------------------CCEEECCCSSCEEEEEEC--TTS---SEEEEEETTCSEEEEEETTTCCEEEE
T ss_pred cEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEEC--CCC---CEEEEEeCCCCEEEEEECCCCcEEEE
Confidence 8999999873 2 1 3344 578899999999 899 89999999998 99999999999999
Q ss_pred ecCC-CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 507 LNTN-VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 507 ~~~~-h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
+..+ |...|++++|+|++++|++++.||.|++||+.+..
T Consensus 234 ~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~ 273 (355)
T 3vu4_A 234 FRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQ 273 (355)
T ss_dssp EECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCS
T ss_pred EEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCC
Confidence 9744 89999999999999999999999999999997743
|
| >3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.6e-22 Score=211.81 Aligned_cols=224 Identities=12% Similarity=0.049 Sum_probs=188.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEE-EeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWL-GLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~t-gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.|+.|++|+.++++....+. .|...+.+++|+|+++.+++ ++.|+.|++||+..+ +.+..+..
T Consensus 183 ~~~s~~~d~~v~~~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~---------~~~~~~~~ 252 (433)
T 3bws_A 183 LWVSQMQANAVHVFDLKTLAYKATVD-LTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTK---------LEIRKTDK 252 (433)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEE-CSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTT---------EEEEECCC
T ss_pred EEEEECCCCEEEEEECCCceEEEEEc-CCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCC---------cEEEEecC
Confidence 78889999999999999887777665 78889999999999998854 458999999998765 23344444
Q ss_pred CCccEEEEEEccCCCEEEEEc--------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 374 HSACVTDLYLCAGFSVAVSSS--------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs--------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
...+.+++|+|+++.+++++ .||.|++||+.+++.+..+.. ...+.+++|+|+++.+++++. .+
T Consensus 253 -~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~---~~~~~~~~~~~~g~~l~~~~~----~~ 324 (433)
T 3bws_A 253 -IGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGP---PGNKRHIVSGNTENKIYVSDM----CC 324 (433)
T ss_dssp -CSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEE---EECEEEEEECSSTTEEEEEET----TT
T ss_pred -CCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccC---CCCcceEEECCCCCEEEEEec----CC
Confidence 34599999999999998887 589999999999988877754 568999999999987655532 89
Q ss_pred CeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---------------CCeEEEEeCCCCeEEEEecC
Q psy10778 446 SILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---------------DGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---------------dg~I~iwd~~~~~~~~~~~~ 509 (556)
+.|++||++ ++.+..+.+...+.+++|+ |+| +++++++. ||.|++||+.+++.+..+.
T Consensus 325 ~~v~v~d~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~- 398 (433)
T 3bws_A 325 SKIEVYDLKEKKVQKSIPVFDKPNTIALS--PDG---KYLYVSCRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWE- 398 (433)
T ss_dssp TEEEEEETTTTEEEEEEECSSSEEEEEEC--TTS---SEEEEEECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEE-
T ss_pred CEEEEEECCCCcEEEEecCCCCCCeEEEc--CCC---CEEEEEecCCCccccccccccccceEEEEEECCCCcEEEEec-
Confidence 999999997 7788888888899999999 888 78887776 5799999999999999887
Q ss_pred CCCCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNT-EGLVIIWESSS 543 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~ 543 (556)
. ...+.+++|+|+|++|++++. ||.|++|++.+
T Consensus 399 ~-~~~~~~~~~s~dg~~l~~~~~~d~~i~v~~~~~ 432 (433)
T 3bws_A 399 A-GNQPTGLDVSPDNRYLVISDFLDHQIRVYRRDG 432 (433)
T ss_dssp C-SSSEEEEEECTTSCEEEEEETTTTEEEEEEETT
T ss_pred C-CCCCceEEEcCCCCEEEEEECCCCeEEEEEecC
Confidence 3 568999999999999988765 99999999864
|
| >4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A | Back alignment and structure |
|---|
Probab=99.91 E-value=9.2e-24 Score=219.80 Aligned_cols=208 Identities=12% Similarity=0.080 Sum_probs=145.5
Q ss_pred EEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc--------CCCEEEEEcCCCcE
Q psy10778 328 ATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA--------GFSVAVSSSEDGTC 399 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~--------~~~~l~sgs~Dg~I 399 (556)
....+.+++.+|++|+.|++|++||...+.. .....+..+.+|.+.|++++|+| ++++|+||+.|++|
T Consensus 93 ~~~~~~~~~~~las~~~d~~v~lw~~~~~~~----~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv 168 (393)
T 4gq1_A 93 NVNSSPVYSLFLACVCQDNTVRLIITKNETI----ITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTL 168 (393)
T ss_dssp ----CCEEEEEEEEEETTSCEEEEEEETTEE----EEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEE
T ss_pred ceeecCCCCCEEEEEeCCCcEEEEECCCCcc----ceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeE
Confidence 3334445567899999999999999986521 11122345789999999999998 78899999999999
Q ss_pred EEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC-eEEEEeecCcCCCCeEEEEEeC-CcEEEEe----------------
Q psy10778 400 LLWDINTIGYIREIPCVDPNTPVSHVTMSETNG-EIASVLQTTKTGGSILRLHTIN-AQLITSL---------------- 461 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~-~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~---------------- 461 (556)
+|||+.++..+..+.. | ..++.+++|+|++. .|++++ .|++|++||++ ++.....
T Consensus 169 ~~Wd~~~~~~~~~~~~-~-~~~v~~v~~~p~~~~~l~~~~-----~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~ 241 (393)
T 4gq1_A 169 IIWRLTDEGPILAGYP-L-SSPGISVQFRPSNPNQLIVGE-----RNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNT 241 (393)
T ss_dssp EEEEEETTEEEEEEEE-C-SSCEEEEEEETTEEEEEEEEE-----TTSEEEEEETTCCC----------CSCCCSEEEES
T ss_pred EEEECCCCceeeeecC-C-CCCcEEEEECCCCCceEEecC-----CCCEEEEEECCCCcccccccccCCcccceEEeccc
Confidence 9999998888777777 7 89999999999875 688888 89999999986 3322111
Q ss_pred ----------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe----------
Q psy10778 462 ----------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS---------- 521 (556)
Q Consensus 462 ----------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s---------- 521 (556)
.+...+.++.|+. +++ +.|++++.|+.+++||+..++....+. .|...+..+.+.
T Consensus 242 ~~~~~~~~~~~~~~~v~~v~~~~-~dg---~~l~s~s~d~~i~vwd~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~ 316 (393)
T 4gq1_A 242 LPLVNTCHSSGIASSLANVRWIG-SDG---SGILAMCKSGAWLRWNLFANNDYNEIS-DSTMKLGPKNLLPNVQGISLFP 316 (393)
T ss_dssp GGGC------CCSSSCSEEEEET-TTT---CEEEEECTTSEEEEEEC--------------------CCSCSEEEECSSC
T ss_pred ccceeeeecccccccceeeeeec-CCC---CEEEEEeCCCCEEEEECccCCCCceEe-eecCccccEEEccccccccccC
Confidence 2345778888874 678 899999999999999998877666665 444444433333
Q ss_pred --------c--CCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 522 --------C--DSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 522 --------~--dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+ ++.++++|+.||.|++||+.++.....+.
T Consensus 317 ~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~~~ 356 (393)
T 4gq1_A 317 SLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSIPI 356 (393)
T ss_dssp CSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEEEE
T ss_pred cceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEEec
Confidence 2 34467788999999999999877655443
|
| >2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=215.07 Aligned_cols=209 Identities=10% Similarity=-0.014 Sum_probs=167.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++|+++.|++|+ +.+.++ .+. +|...|.+++|+|+| .++++.+|+.+.. ....+ .|
T Consensus 29 ~iASas~D~TV~--d~~~~~---~l~-gh~~~v~~V~FsPdg-------~~~~~~~~~~~~~----------~~~~~-~~ 84 (588)
T 2j04_A 29 LYLTTFPDISIG--QPKYAK---DIN-CNSKNLFHVKEFPLE-------FENKLDFELAQQN----------GLLNS-QP 84 (588)
T ss_dssp EEEECSSSEEEE--EECCCS---CCS-SBGGGTEEEEEECCC-------CCCTTTTSCCCSS----------CSSTT-SC
T ss_pred EEEEEcCCceee--cccccc---eec-CCCccEEEEEECCCC-------CcceEEEEeCCCc----------eEeec-CC
Confidence 899999999999 654443 333 899999999999998 5677766665432 11111 55
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC----CCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN----TPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~----~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
...|.+++|||+|.+||+++.||.|++||... .+..+.. + . ..+.+++|||+|+.|++++ .||+|++
T Consensus 85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~~-~-~~~~~~sv~svafSPDG~~LAsgs-----~DGtVkI 155 (588)
T 2j04_A 85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLDS-K-GNLSSRTYHCFEWNPIESSIVVGN-----EDGELQF 155 (588)
T ss_dssp SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECCC-S-SCSTTTCEEEEEECSSSSCEEEEE-----TTSEEEE
T ss_pred CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeeccC-C-CccccccEEEEEEcCCCCEEEEEc-----CCCEEEE
Confidence 88999999999999999999999999999553 5555553 2 2 2599999999999999999 9999999
Q ss_pred EEeCCc--------EEEEee-----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE---EEEecCCCCCC
Q psy10778 451 HTINAQ--------LITSLA-----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH---LLTLNTNVALP 514 (556)
Q Consensus 451 wdi~g~--------~i~~~~-----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~---~~~~~~~h~~~ 514 (556)
||+.+. .+.++. |...|.+++|+ |+ . +++++.|+.|++||+..++. ..++..+|...
T Consensus 156 Wd~~~~~l~~~~~i~l~ti~~~~~gh~~~V~sVawS--Pd----g-Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~ 228 (588)
T 2j04_A 156 FSIRKNSENTPEFYFESSIRLSDAGSKDWVTHIVWY--ED----V-LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRK 228 (588)
T ss_dssp EECCCCTTTCCCCEEEEEEECSCTTCCCCEEEEEEE--TT----E-EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSC
T ss_pred EECCCCccccccceeeeeeecccccccccEEEEEEc--CC----c-EEEEeCCCeEEEEECCCCccccceeeecccccCc
Confidence 999843 345542 45699999999 77 4 88999999999999987773 45664367889
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
|.+++|+ |+.|++++ +|.|++||+.+++.
T Consensus 229 V~svaFs--g~~LASa~-~~tIkLWd~~~~~~ 257 (588)
T 2j04_A 229 ITDLKIV--DYKVVLTC-PGYVHKIDLKNYSI 257 (588)
T ss_dssp CCCEEEE--TTEEEEEC-SSEEEEEETTTTEE
T ss_pred EEEEEEE--CCEEEEEe-CCeEEEEECCCCeE
Confidence 9999999 68899887 69999999988655
|
| >4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A | Back alignment and structure |
|---|
Probab=99.89 E-value=4.8e-21 Score=200.77 Aligned_cols=246 Identities=13% Similarity=0.175 Sum_probs=184.1
Q ss_pred CCCCcceeEeeccCCeEeeecceeeeeeeccCcccc--cc-----cccccccCCcceEEeccCCCeEEEEeCCCCCCcce
Q psy10778 246 HRNPVSKLVPLRTNDVFGLAKFTTLLHSYHKDKNTN--LI-----SSLNVIGAGAGMICWNECDNLIRLKMSKELPATPV 318 (556)
Q Consensus 246 ~~~~i~~l~~l~~~~v~~~~~~~~~~~~~~~~k~~~--~~-----~~~~~~~~~~~~l~~gs~Dg~I~lw~~~~~~~~~~ 318 (556)
+...|..+...++|..++.......+..+..+.+.. .+ ....+.++ ..++++|+.|+.+++|+.........
T Consensus 146 ~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~-~~~l~sgs~d~~i~~~d~~~~~~~~~ 224 (420)
T 4gga_A 146 PGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWN-SYILSSGSRSGHIHHHDVRVAEHHVA 224 (420)
T ss_dssp TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE-TTEEEEEETTSEEEEEETTSSSCEEE
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeC-CCEEEEEeCCCceeEeeecccceeeE
Confidence 445566676667777665544333333332221110 00 01111121 23899999999999999886544433
Q ss_pred EcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCC-EEEE--EcC
Q psy10778 319 IRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFS-VAVS--SSE 395 (556)
Q Consensus 319 ~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~-~l~s--gs~ 395 (556)
...+|...+.++.++++++++++++.||.+++|+...+... ...+.....|...|.+++|+|.+. ++++ |+.
T Consensus 225 ~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~-----~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~ 299 (420)
T 4gga_A 225 TLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTS 299 (420)
T ss_dssp EEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSC-----SCCSEEECCCSSCEEEEEECTTCTTEEEEEECTT
T ss_pred EecccccceeeeeecCCCCeeeeeeccccceEEeecccccc-----ceeeeeecccCCceeeeeeCCCcccEEEEEeecC
Confidence 33489999999999999999999999999999998765211 134577889999999999999765 5554 568
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEe
Q psy10778 396 DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFS 473 (556)
Q Consensus 396 Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s 473 (556)
|++|++||+.+++.+..+.. ...+.++.|+++++.+++++.. .++.|++||+. ++++..+. |.+.|++++|+
T Consensus 300 D~~I~iwd~~t~~~~~~~~~---~~~v~~~~~~~~~~~lv~~sg~---~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~s 373 (420)
T 4gga_A 300 DRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGF---AQNQLVIWKYPTMAKVAELKGHTSRVLSLTMS 373 (420)
T ss_dssp TCEEEEEETTTTEEEEEEEC---SSCEEEEEEETTTTEEEEEECT---TTCCEEEEETTTCCEEEEECCCSSCEEEEEEC
T ss_pred CCEEEEEeCCccccceeecc---ccceeeeeecCCCCeEEEEEec---CCCEEEEEECCCCcEEEEEcCCCCCEEEEEEc
Confidence 99999999999999999987 5789999999999999887521 58999999997 88888885 78899999999
Q ss_pred eCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
|+| .+|++|+.||+|++||+....+.+...
T Consensus 374 --pdg---~~l~S~s~D~tvriWdv~~~~~~~~~~ 403 (420)
T 4gga_A 374 --PDG---ATVASAAADETLRLWRCFELDPARRRE 403 (420)
T ss_dssp --TTS---SCEEEEETTTEEEEECCSCSSCC----
T ss_pred --CCC---CEEEEEecCCeEEEEECCCCCccchhh
Confidence 999 899999999999999998776655554
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.9e-20 Score=196.25 Aligned_cols=216 Identities=10% Similarity=0.030 Sum_probs=172.1
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG---NILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg---~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
+.|++||..++.. ..+. .|...|.+++|+|+|+.|++++.++ .|++||+.++ + ...+..|...+.
T Consensus 159 ~~i~i~d~~g~~~-~~l~-~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg---------~-~~~l~~~~~~~~ 226 (415)
T 2hqs_A 159 YELRVSDYDGYNQ-FVVH-RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANG---------A-VRQVASFPRHNG 226 (415)
T ss_dssp EEEEEEETTSCSC-EEEE-EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTC---------C-EEEEECCSSCEE
T ss_pred ceEEEEcCCCCCC-EEEe-CCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCC---------c-EEEeecCCCccc
Confidence 7999999986543 3333 6888999999999999999999875 9999999865 2 245778888999
Q ss_pred EEEEccCCCEEE-EEcCCCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC--eEEEEEeC
Q psy10778 380 DLYLCAGFSVAV-SSSEDGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS--ILRLHTIN 454 (556)
Q Consensus 380 ~l~~s~~~~~l~-sgs~Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~--~I~iwdi~ 454 (556)
+++|+|+|+.|+ +++.||. |.+||+.+++. ..+.. | ...+.+++|+|+|+.|++++. .++ .|++||++
T Consensus 227 ~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~-~~l~~-~-~~~~~~~~~spdg~~l~~~s~----~~g~~~i~~~d~~ 299 (415)
T 2hqs_A 227 APAFSPDGSKLAFALSKTGSLNLYVMDLASGQI-RQVTD-G-RSNNTEPTWFPDSQNLAFTSD----QAGRPQVYKVNIN 299 (415)
T ss_dssp EEEECTTSSEEEEEECTTSSCEEEEEETTTCCE-EECCC-C-SSCEEEEEECTTSSEEEEEEC----TTSSCEEEEEETT
T ss_pred CEEEcCCCCEEEEEEecCCCceEEEEECCCCCE-EeCcC-C-CCcccceEECCCCCEEEEEEC----CCCCcEEEEEECC
Confidence 999999999777 7776665 99999998765 56666 7 788999999999999998873 234 68888887
Q ss_pred CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCC---CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 455 AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSD---GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 455 g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~d---g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+.....+ .+...+.+++|+ |+| ++|++++.+ +.|++||+.+++.. .+. .+ ..+.+++|+|||+.|+++
T Consensus 300 ~~~~~~l~~~~~~~~~~~~s--pdG---~~l~~~~~~~g~~~i~~~d~~~~~~~-~l~-~~-~~~~~~~~spdg~~l~~~ 371 (415)
T 2hqs_A 300 GGAPQRITWEGSQNQDADVS--SDG---KFMVMVSSNGGQQHIAKQDLATGGVQ-VLS-ST-FLDETPSLAPNGTMVIYS 371 (415)
T ss_dssp SSCCEECCCSSSEEEEEEEC--TTS---SEEEEEEECSSCEEEEEEETTTCCEE-ECC-CS-SSCEEEEECTTSSEEEEE
T ss_pred CCCEEEEecCCCcccCeEEC--CCC---CEEEEEECcCCceEEEEEECCCCCEE-Eec-CC-CCcCCeEEcCCCCEEEEE
Confidence 4333333 456788899999 999 788877754 58999999888763 454 34 389999999999999988
Q ss_pred cCCC---cEEEEEcCCCC
Q psy10778 531 NTEG---LVIIWESSSHN 545 (556)
Q Consensus 531 s~Dg---~V~vwdl~~~~ 545 (556)
+.++ .|++||+..+.
T Consensus 372 s~~~~~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 372 SSQGMGSVLNLVSTDGRF 389 (415)
T ss_dssp EEETTEEEEEEEETTSCC
T ss_pred EcCCCccEEEEEECCCCc
Confidence 8777 79999997543
|
| >2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1e-20 Score=189.30 Aligned_cols=180 Identities=12% Similarity=0.033 Sum_probs=141.6
Q ss_pred eEEec--cCCCeEEEEeCC-CCCCcceEcCCCCCceEEEEEcC---CCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWN--ECDNLIRLKMSK-ELPATPVIRPPLGATIATATTAP---DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~g--s~Dg~I~lw~~~-~~~~~~~~~~~h~~~V~~i~~s~---dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
++.++ +.|+.|++|++. +++.+.... .|...++.++|++ ++.+|++|+.|++|+|||+.++ +.+
T Consensus 147 lv~ss~~g~d~~V~~~~~s~dG~~~~s~~-~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TG---------k~l 216 (356)
T 2w18_A 147 LVSSSGTLSDQQVEVMTFAEDGGGKENQF-LMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTG---------QLL 216 (356)
T ss_dssp EEEEESSSTTCEEEEEEECTTSCEEEEEE-ECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTC---------CEE
T ss_pred EEEecccCCCCcEEEEEECCCCceeeeec-cCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCC---------cEE
Confidence 55553 369999999994 466555554 7888999999999 7899999999999999999987 566
Q ss_pred eEeeCCC---ccEEEEEEccCCCEE------------EEEcCCCcEEEEeCCCCeEEEEe-----CCCCCCCCeeEEEEe
Q psy10778 369 TILLGHS---ACVTDLYLCAGFSVA------------VSSSEDGTCLLWDINTIGYIREI-----PCVDPNTPVSHVTMS 428 (556)
Q Consensus 369 ~~l~~h~---~~V~~l~~s~~~~~l------------~sgs~Dg~I~iwdl~~~~~v~~l-----~~~h~~~~V~~l~~s 428 (556)
+++.+|. ..+.+++|+|+|.++ ++|+.|++|++||..+++.+..+ .+ | ...+.+..+
T Consensus 217 ~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~tgk~l~v~~~~~p~G-h-~~~~lsg~~- 293 (356)
T 2w18_A 217 KKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKTTLSVGVMLYCLPPG-Q-AGRFLEGDV- 293 (356)
T ss_dssp EEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTTTEEEEEEEECCCTT-C-CCCEEEEEE-
T ss_pred EEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCCCEEEEEEEeeccCC-C-cceeEcccc-
Confidence 7887654 467888999999876 66889999999999999887765 24 5 444444444
Q ss_pred CCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCe-EEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 429 ETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRI-TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 429 p~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i-~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
++..+++++ .|++|++||+. |+++.++. |...+ .+++|+ |+| ++|++|+.|++|+|||+
T Consensus 294 -sg~~lASgS-----~DgTIkIWDl~tGk~l~tL~gH~~~vvs~vafS--PDG---~~LaSGS~D~TIklWd~ 355 (356)
T 2w18_A 294 -KDHCAAAIL-----TSGTIAIWDLLLGQCTALLPPVSDQHWSFVKWS--GTD---SHLLAGQKDGNIFVYHY 355 (356)
T ss_dssp -ETTEEEEEE-----TTSCEEEEETTTCSEEEEECCC--CCCCEEEEC--SSS---SEEEEECTTSCEEEEEE
T ss_pred -CCCEEEEEc-----CCCcEEEEECCCCcEEEEecCCCCCeEEEEEEC--CCC---CEEEEEECCCcEEEecC
Confidence 377889988 89999999998 89999986 44444 468999 999 89999999999999985
|
| >4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.86 E-value=2.4e-19 Score=178.82 Aligned_cols=192 Identities=16% Similarity=0.221 Sum_probs=160.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++|+.++.+++|+............+|...+.++++.+++++|++|+.||+|++||+.++... .........|
T Consensus 121 ~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~-----~~~~~~~~~~ 195 (318)
T 4ggc_A 121 ILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGG-----WVPLQTFTQH 195 (318)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTB-----SCCSEEECCC
T ss_pred EEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCccc-----ccceeeeccc
Confidence 78888899999999887665444444489999999999999999999999999999999865221 1345667789
Q ss_pred CccEEEEEEccCCC---EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCAGFS---VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~~~~---~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.+.|.++++++++. .+++++.+++|++||............ ...+..+.+++++..+++++.. .|+.|++|
T Consensus 196 ~~~v~~~~~~~~~~~~~~~~~~~~~~~i~lwd~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~sg~---~d~~i~iw 269 (318)
T 4ggc_A 196 QGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDA---HSQVCSILWSPHYKELISGHGF---AQNQLVIW 269 (318)
T ss_dssp CSCEEEEEECTTSTTEEEEEECTTTCEEEEEETTTCCEEEEEEC---SSCEEEEEEETTTTEEEEEECT---TTCCEEEE
T ss_pred CCceEEEEecCCCCcEEEEEecCCCCEEEEEecccccccccccc---eeeeeeeeecccccceEEEEEc---CCCEEEEE
Confidence 99999999999775 335678899999999999887777765 6889999999999998876521 68999999
Q ss_pred EeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe
Q psy10778 452 TIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA 502 (556)
Q Consensus 452 di~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~ 502 (556)
|++ ++++..+. |.+.|++++|+ |+| ++|++|+.||+|++||+.+..
T Consensus 270 d~~~~~~~~~l~gH~~~V~~l~~s--pdg---~~l~S~s~D~~v~iWd~~~~d 317 (318)
T 4ggc_A 270 KYPTMAKVAELKGHTSRVLSLTMS--PDG---ATVASAAADETLRLWRCFELD 317 (318)
T ss_dssp ETTTCCEEEEECCCSSCEEEEEEC--TTS---SCEEEEETTTEEEEECCSCCC
T ss_pred ECCCCcEEEEEcCCCCCEEEEEEc--CCC---CEEEEEecCCeEEEEECCCCC
Confidence 997 88888885 78999999999 899 899999999999999987653
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.85 E-value=5.7e-20 Score=180.47 Aligned_cols=223 Identities=14% Similarity=0.104 Sum_probs=171.4
Q ss_pred eccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeee-ccCcccccccCCCeEeeCC-C
Q psy10778 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYEL-NASTNKIEFCKPPTILLGH-S 375 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~-~~~~~~~~~~~~~~~l~~h-~ 375 (556)
.++.|+.|++|+..+++..... .|...|.+++|+|+|++|++++ ++.|++||+.. + +......+| .
T Consensus 17 ~~~~~~~i~~~d~~~~~~~~~~--~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~---------~~~~~~~~~~~ 84 (297)
T 2ojh_A 17 GGSMRSSIEIFNIRTRKMRVVW--QTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDP---------SPEKVDTGFAT 84 (297)
T ss_dssp -CCCCEEEEEEETTTTEEEEEE--EESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCC---------SCEECCCTTCC
T ss_pred CCCcceeEEEEeCCCCceeeec--cCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCC---------CceEecccccc
Confidence 3568999999999987765444 4788999999999999999987 78999999986 5 233444455 4
Q ss_pred ccEEEEEEccCCCEEEEEc--CCCcEEEE--eCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE-EEeecCcCCCCeEEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSS--EDGTCLLW--DINTIGYIREIPCVDPNTPVSHVTMSETNGEIA-SVLQTTKTGGSILRL 450 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs--~Dg~I~iw--dl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~-s~s~~~~~~d~~I~i 450 (556)
..+.+++|+|+++.+++++ .++...|| ++.+++ ...+.. ...+..++|+|+++.|+ ++. .++.+++
T Consensus 85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~-~~~~~~---~~~~~~~~~spdg~~l~~~~~-----~~~~~~l 155 (297)
T 2ojh_A 85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGT-PRLMTK---NLPSYWHGWSPDGKSFTYCGI-----RDQVFDI 155 (297)
T ss_dssp CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCC-CEECCS---SSSEEEEEECTTSSEEEEEEE-----ETTEEEE
T ss_pred ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCc-eEEeec---CCCccceEECCCCCEEEEEEC-----CCCceEE
Confidence 6789999999999999988 33455555 555444 455655 34589999999999888 455 6788999
Q ss_pred EEeC---CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCC-CCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 451 HTIN---AQLITSLASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY-KLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 451 wdi~---g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
|+++ ++......+...+.+++|+ |+| +.|++++ .++.+++|++. .+..+..+. .+...+.+++|+|+|+
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~s~dg~ 229 (297)
T 2ojh_A 156 YSMDIDSGVETRLTHGEGRNDGPDYS--PDG---RWIYFNSSRTGQMQIWRVRVDGSSVERIT-DSAYGDWFPHPSPSGD 229 (297)
T ss_dssp EEEETTTCCEEECCCSSSCEEEEEEC--TTS---SEEEEEECTTSSCEEEEEETTSSCEEECC-CCSEEEEEEEECTTSS
T ss_pred EEEECCCCcceEcccCCCccccceEC--CCC---CEEEEEecCCCCccEEEECCCCCCcEEEe-cCCcccCCeEECCCCC
Confidence 9864 3444334567789999999 888 6666655 58999999875 556667776 5778899999999999
Q ss_pred EEEEEcCC-----------CcEEEEEcCCCCCc
Q psy10778 526 HLYASNTE-----------GLVIIWESSSHNRT 547 (556)
Q Consensus 526 ~l~sgs~D-----------g~V~vwdl~~~~~~ 547 (556)
+|++++.+ +.|++||+.+++..
T Consensus 230 ~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~ 262 (297)
T 2ojh_A 230 KVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVE 262 (297)
T ss_dssp EEEEEEEETTCCSCCSSEEEEEEEEETTSCSCE
T ss_pred EEEEEEcCCCCCcccccCceEEEEEecCCCCce
Confidence 99988766 56999999886653
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.85 E-value=3.4e-19 Score=179.47 Aligned_cols=227 Identities=15% Similarity=0.153 Sum_probs=179.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCC-CeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKP-PTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~-~~~l~ 372 (556)
++++++.++.|++||..+++....+. .+...+ +++|+|+|+++++++. ++.|.+||..++ +. ...+.
T Consensus 12 ~~v~~~~~~~v~~~d~~~~~~~~~~~-~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~---------~~~~~~~~ 80 (331)
T 3u4y_A 12 GIVVEQHLRRISFFSTDTLEILNQIT-LGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLE---------PPKVVAIQ 80 (331)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEE-CCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSS---------SCEEEEEE
T ss_pred EEEEecCCCeEEEEeCcccceeeeEE-ccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCC---------ceeEEecc
Confidence 67778899999999999988877776 445566 9999999997776665 889999998876 33 45666
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCC---cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe-E
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDG---TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI-L 448 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~-I 448 (556)
.+..+..+++|+|++++++++..++ .|.+||+.+++.+..+.. ......++|+|+++.+++++. .++. |
T Consensus 81 ~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~spdg~~l~~~~~----~~~~~i 153 (331)
T 3u4y_A 81 EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPI---PYDAVGIAISPNGNGLILIDR----SSANTV 153 (331)
T ss_dssp ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEEC---CTTEEEEEECTTSSCEEEEEE----TTTTEE
T ss_pred cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEEC---CCCccceEECCCCCEEEEEec----CCCceE
Confidence 6766666699999999988655553 899999999999888876 466799999999987776653 5567 9
Q ss_pred EEEEeC--CcEE----EEeecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCeE---EEEecCCCCCCeEEE
Q psy10778 449 RLHTIN--AQLI----TSLASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLAH---LLTLNTNVALPVIAV 518 (556)
Q Consensus 449 ~iwdi~--g~~i----~~~~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~~---~~~~~~~h~~~V~~l 518 (556)
.+|+++ +... ..+.......+++|+ |+| +.+ +++..++.|++||+.+++. +..+. ....+.++
T Consensus 154 ~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~s--pdg---~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~--~~~~~~~~ 226 (331)
T 3u4y_A 154 RRFKIDADGVLFDTGQEFISGGTRPFNITFT--PDG---NFAFVANLIGNSIGILETQNPENITLLNAVG--TNNLPGTI 226 (331)
T ss_dssp EEEEECTTCCEEEEEEEEECSSSSEEEEEEC--TTS---SEEEEEETTTTEEEEEECSSTTSCEEEEEEE--CSSCCCCE
T ss_pred EEEEECCCCcEeecCCccccCCCCccceEEC--CCC---CEEEEEeCCCCeEEEEECCCCcccceeeecc--CCCCCceE
Confidence 999986 3332 223345678999999 898 644 5555789999999998887 77776 34677899
Q ss_pred EEecCCCEEEEEc-CCCcEEEEEcCCCCC
Q psy10778 519 TYSCDSQHLYASN-TEGLVIIWESSSHNR 546 (556)
Q Consensus 519 ~~s~dg~~l~sgs-~Dg~V~vwdl~~~~~ 546 (556)
+|+|||+++++++ .++.|.+||+.+++.
T Consensus 227 ~~spdg~~l~v~~~~~~~i~~~d~~~~~~ 255 (331)
T 3u4y_A 227 VVSRDGSTVYVLTESTVDVFNFNQLSGTL 255 (331)
T ss_dssp EECTTSSEEEEECSSEEEEEEEETTTTEE
T ss_pred EECCCCCEEEEEEcCCCEEEEEECCCCce
Confidence 9999999777665 578899999988655
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.84 E-value=3.1e-19 Score=179.40 Aligned_cols=229 Identities=9% Similarity=0.060 Sum_probs=176.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC-ceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA-TIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~-~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++++.++.|++||..+++....+..++.. .+.+++|+|+|+.++ +++.++.|.+||+.++ +.+..+.
T Consensus 3 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---------~~~~~~~ 73 (337)
T 1pby_B 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---------ETLGRID 73 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---------CEEEEEE
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCC---------CeEeeEE
Confidence 7888899999999999988777766644432 478999999998765 5566789999998765 2223333
Q ss_pred C-C----CccEEEEEEccCCCEEEEEc------------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 373 G-H----SACVTDLYLCAGFSVAVSSS------------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 373 ~-h----~~~V~~l~~s~~~~~l~sgs------------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
. + ...+.+++|+|+++.+++++ .++.|.+||+.+++.+..+.. ...+..++|+|+++.++
T Consensus 74 ~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 150 (337)
T 1pby_B 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLY 150 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEE
T ss_pred cCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeC---CCCcceeEECCCCCEEE
Confidence 2 1 22567899999999888876 579999999999988888876 56788999999999888
Q ss_pred EEeecCcCCCCeEEEEEeC-CcEEEEee----------------------------------------------------
Q psy10778 436 SVLQTTKTGGSILRLHTIN-AQLITSLA---------------------------------------------------- 462 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~-g~~i~~~~---------------------------------------------------- 462 (556)
+++ +.|++||+. ++.+..+.
T Consensus 151 ~~~-------~~i~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 223 (337)
T 1pby_B 151 GLG-------RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp EES-------SSEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred EeC-------CeEEEEECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEE
Confidence 763 457777765 44333221
Q ss_pred ---------------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 463 ---------------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 463 ---------------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
+...+.+++|+ |+| ++++++ ++.|++||+.+++.+..+.. ...+.+++|+|+|++|
T Consensus 224 ~d~~~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l 294 (337)
T 1pby_B 224 MDLETGEMAMREVRIMDVFYFSTAVN--PAK---TRAFGA--YNVLESFDLEKNASIKRVPL--PHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEEC--TTS---SEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEECTTSCEE
T ss_pred EeCCCCCceEeecCCCCCceeeEEEC--CCC---CEEEEe--CCeEEEEECCCCcCcceecC--CCceeeEEECCCCCEE
Confidence 11234568999 888 788877 69999999999998888872 3567899999999999
Q ss_pred EEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 528 YASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
++++.++.|.+||+.+++.+..+.
T Consensus 295 ~~~~~~~~i~v~d~~~~~~~~~~~ 318 (337)
T 1pby_B 295 WLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEcCCCcEEEEECcCCcEEEEEE
Confidence 999999999999999887665543
|
| >2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A | Back alignment and structure |
|---|
Probab=99.84 E-value=1.1e-19 Score=190.43 Aligned_cols=229 Identities=9% Similarity=-0.016 Sum_probs=174.6
Q ss_pred eEEecc----CCC----eEEEEeC--CCCCCcc--eEcCCCCCceEEEEEcC--------------CCCEEEEEeCC---
Q psy10778 295 MICWNE----CDN----LIRLKMS--KELPATP--VIRPPLGATIATATTAP--------------DCHTLWLGLTS--- 345 (556)
Q Consensus 295 ~l~~gs----~Dg----~I~lw~~--~~~~~~~--~~~~~h~~~V~~i~~s~--------------dg~~l~tgs~D--- 345 (556)
+++.|+ .|| .++|||+ .+++.+. .+. +|...+..+++.+ .+..++.++.+
T Consensus 77 ~~~~g~~~~~~~G~~~~~i~lwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~d~~~~~~~g~~~~~~~~l~~~s~~~~~ 155 (415)
T 2hqs_A 77 AVVVGQVTPNPDGSYNVAYQLVDTGGAPGTVLAQNSYK-VNKQWLRYAGHTASDEVFEKLTGIKGAFRTRIAYVVQTNGG 155 (415)
T ss_dssp EEEEEEEEECTTSCEEEEEEEEECSSSTTCEEEEEEEE-ECGGGHHHHHHHHHHHHHHHHHSSCCCTTCEEEEEEECSSS
T ss_pred EEEEEEEEECCCCeEEEEEEEEeCCCCCCCEEeeeEEE-cChhHHHHHHHHHHHHHHHHHcCCCCcCCCEEEEEEecCCC
Confidence 666665 567 9999999 8777542 233 6777777776654 15667666654
Q ss_pred ---CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC---cEEEEeCCCCeEEEEeCCCCCC
Q psy10778 346 ---GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG---TCLLWDINTIGYIREIPCVDPN 419 (556)
Q Consensus 346 ---g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg---~I~iwdl~~~~~v~~l~~~h~~ 419 (556)
++|++||+.. .....+.+|...|.+++|+|+|+.|++++.++ .|++||+.+++... +.. + .
T Consensus 156 ~~~~~i~i~d~~g----------~~~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~-l~~-~-~ 222 (415)
T 2hqs_A 156 QFPYELRVSDYDG----------YNQFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQ-VAS-F-P 222 (415)
T ss_dssp SCCEEEEEEETTS----------CSCEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEE-EEC-C-S
T ss_pred CccceEEEEcCCC----------CCCEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEE-eec-C-C
Confidence 7999999864 23577888999999999999999999999875 99999999987754 555 5 7
Q ss_pred CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC-CC--eEEE
Q psy10778 420 TPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS-DG--TIQL 495 (556)
Q Consensus 420 ~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg--~I~i 495 (556)
..+.+++|+|+|+.|+..+... .+..|++||++ ++......+...+.+++|+ |+| +.|++++. +| .|++
T Consensus 223 ~~~~~~~~spdg~~la~~~~~~--g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~s--pdg---~~l~~~s~~~g~~~i~~ 295 (415)
T 2hqs_A 223 RHNGAPAFSPDGSKLAFALSKT--GSLNLYVMDLASGQIRQVTDGRSNNTEPTWF--PDS---QNLAFTSDQAGRPQVYK 295 (415)
T ss_dssp SCEEEEEECTTSSEEEEEECTT--SSCEEEEEETTTCCEEECCCCSSCEEEEEEC--TTS---SEEEEEECTTSSCEEEE
T ss_pred CcccCEEEcCCCCEEEEEEecC--CCceEEEEECCCCCEEeCcCCCCcccceEEC--CCC---CEEEEEECCCCCcEEEE
Confidence 8899999999999888443210 23459999997 5554333567789999999 999 77887775 44 6888
Q ss_pred EeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC---CcEEEEEcCCCCC
Q psy10778 496 WSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE---GLVIIWESSSHNR 546 (556)
Q Consensus 496 wd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D---g~V~vwdl~~~~~ 546 (556)
||+.+++. ..+. .+...+.+++|+|||++|++++.+ +.|++||+.+++.
T Consensus 296 ~d~~~~~~-~~l~-~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 296 VNINGGAP-QRIT-WEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 347 (415)
T ss_dssp EETTSSCC-EECC-CSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred EECCCCCE-EEEe-cCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCE
Confidence 89887764 3444 456789999999999999988764 5899999988654
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.3e-18 Score=188.51 Aligned_cols=226 Identities=8% Similarity=0.004 Sum_probs=179.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEe--eeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEY--ELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~--~~~~~~~~~~~~~~~~~l~ 372 (556)
++++++.|++|++||..+++.+..+..++. +.+++++|+|++|++++.|++|++||+ .+. +.+..+.
T Consensus 151 ~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~--~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~---------~~~~~i~ 219 (543)
T 1nir_A 151 FSVTLRDAGQIALVDGDSKKIVKVIDTGYA--VHISRMSASGRYLLVIGRDARIDMIDLWAKEP---------TKVAEIK 219 (543)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEECSTT--EEEEEECTTSCEEEEEETTSEEEEEETTSSSC---------EEEEEEE
T ss_pred EEEEEcCCCeEEEEECCCceEEEEEecCcc--cceEEECCCCCEEEEECCCCeEEEEECcCCCC---------cEEEEEe
Confidence 778889999999999999988888875554 889999999999999999999999999 443 3345565
Q ss_pred CCCccEEEEEEcc----CCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCC----------CCCCeeEEEEeCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCA----GFSVAVSSS-EDGTCLLWDINTIGYIREIPCVD----------PNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 373 ~h~~~V~~l~~s~----~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h----------~~~~V~~l~~sp~~~~i~s~ 437 (556)
+...+..++|+| +|+++++++ .+++|.+||..+++.+.++.. + +...+..+.++|+++.+++.
T Consensus 220 -~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~-~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs 297 (543)
T 1nir_A 220 -IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST-RGMTVDTQTYHPEPRVAAIIASHEHPEFIVN 297 (543)
T ss_dssp -CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC-CEECSSSCCEESCCCEEEEEECSSSSEEEEE
T ss_pred -cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecc-cCcccCccccccCCceEEEEECCCCCEEEEE
Confidence 345679999999 999998888 489999999999999888764 2 02368899999988776655
Q ss_pred eecCcCCCCeEEEEEeC-Cc--EEEEeecCCCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCCeEEEEecCC---
Q psy10778 438 LQTTKTGGSILRLHTIN-AQ--LITSLASELRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKLAHLLTLNTN--- 510 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~--~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~~~~~~~~~~--- 510 (556)
.. .++.|.+||.. ++ .+..+.+...+.+++|+ |+| +++++ +..+++|.+||..+++++..+..+
T Consensus 298 ~~----~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~~~s--pdg---~~l~va~~~~~~v~v~D~~tg~l~~~i~~g~~p 368 (543)
T 1nir_A 298 VK----ETGKVLLVNYKDIDNLTVTSIGAAPFLHDGGWD--SSH---RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTP 368 (543)
T ss_dssp ET----TTTEEEEEECTTSSSCEEEEEECCSSCCCEEEC--TTS---CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSB
T ss_pred EC----CCCeEEEEEecCCCcceeEEeccCcCccCceEC--CCC---CEEEEEecCCCeEEEEECCCCeEEEeeccCCCC
Confidence 43 78999999996 33 23355667788999999 899 66554 556899999999999999888742
Q ss_pred CCCCeEEEEEecC-CCEEEEEc-CCCcEEEEEcCC
Q psy10778 511 VALPVIAVTYSCD-SQHLYASN-TEGLVIIWESSS 543 (556)
Q Consensus 511 h~~~V~~l~~s~d-g~~l~sgs-~Dg~V~vwdl~~ 543 (556)
|.+....+ ++|+ +..++++. .|++|.+||+.+
T Consensus 369 h~g~g~~~-~~p~~g~~~~s~~~~d~~V~v~d~~~ 402 (543)
T 1nir_A 369 HPGRGANF-VHPKYGPVWSTSHLGDGSISLIGTDP 402 (543)
T ss_dssp CCTTCEEE-EETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCCCccc-CCCCCccEEEeccCCCceEEEEEeCC
Confidence 54444443 5777 56666665 589999999988
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.3e-19 Score=177.76 Aligned_cols=227 Identities=11% Similarity=0.035 Sum_probs=172.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++++.++.|++||..+++....+.......+..++|+|+|+.++ ++..++.|.+||+.++ +....+..
T Consensus 13 ~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~---------~~~~~~~~ 83 (349)
T 1jmx_B 13 YMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTC---------KNTFHANL 83 (349)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTT---------EEEEEEES
T ss_pred EEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCC---------cEEEEEEc
Confidence 7788889999999999988777766644333678999999998665 4557899999998765 22233332
Q ss_pred -C-----CccEEEEEEccCCCEEEEEcCC------------CcEEEEeCCCCe---EEEEeCCCCCCCCeeEEEEeCCCC
Q psy10778 374 -H-----SACVTDLYLCAGFSVAVSSSED------------GTCLLWDINTIG---YIREIPCVDPNTPVSHVTMSETNG 432 (556)
Q Consensus 374 -h-----~~~V~~l~~s~~~~~l~sgs~D------------g~I~iwdl~~~~---~v~~l~~~h~~~~V~~l~~sp~~~ 432 (556)
+ ...+.+++|+|+|+.+++++.+ +.|.+||+.+++ .+..+.. ...+.+++|+|+++
T Consensus 84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~ 160 (349)
T 1jmx_B 84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM---PRQVYLMRAADDGS 160 (349)
T ss_dssp CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC---CSSCCCEEECTTSC
T ss_pred ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccC---CCcccceeECCCCc
Confidence 2 2337789999999999988865 899999998843 3445554 35688999999999
Q ss_pred eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC----------------------------------------------
Q psy10778 433 EIASVLQTTKTGGSILRLHTIN-AQLITSLASEL---------------------------------------------- 465 (556)
Q Consensus 433 ~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~---------------------------------------------- 465 (556)
+++++ . .|++||+. ++.+..+....
T Consensus 161 -l~~~~-----~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 232 (349)
T 1jmx_B 161 -LYVAG-----P--DIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLL 232 (349)
T ss_dssp -EEEES-----S--SEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEE
T ss_pred -EEEcc-----C--cEEEEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccc
Confidence 65554 2 39999986 66665543221
Q ss_pred -----------------------CeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 466 -----------------------RITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 466 -----------------------~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
.+.+++++ | +| ++++++ ++.|.+||+.+++.+..+.. ...+.+++|+
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--p~dg---~~l~~~--~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s 303 (349)
T 1jmx_B 233 YGYLSVDLKTGKTHTQEFADLTELYFTGLRS--PKDP---NQIYGV--LNRLAKYDLKQRKLIKAANL--DHTYYCVAFD 303 (349)
T ss_dssp EEEEEEETTTCCEEEEEEEECSSCEEEEEEC--SSCT---TEEEEE--ESEEEEEETTTTEEEEEEEC--SSCCCEEEEC
T ss_pred eeEEEEeccCCcEEecccccCCCcceeeEec--CCCC---CEEEEE--cCeEEEEECccCeEEEEEcC--CCCccceEEC
Confidence 34456677 7 88 778777 78999999999998888873 3457899999
Q ss_pred cCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 522 CDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|+|+.|++++.++.|.+||+.+++.+..+
T Consensus 304 ~dg~~l~~~~~~~~v~v~d~~~~~~~~~~ 332 (349)
T 1jmx_B 304 KKGDKLYLGGTFNDLAVFNPDTLEKVKNI 332 (349)
T ss_dssp SSSSCEEEESBSSEEEEEETTTTEEEEEE
T ss_pred CCCCEEEEecCCCeEEEEeccccceeeee
Confidence 99998888899999999999987765554
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.81 E-value=4.1e-18 Score=171.63 Aligned_cols=231 Identities=13% Similarity=0.153 Sum_probs=165.7
Q ss_pred eEEeccCCCeEEEEeCC-CCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSK-ELPATPVIRPPLGATIATATTAPDCHTLWLGLTS-GNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~-~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D-g~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+++.++.|+.|++|++. ++.........|...+.+++|+|+|++|++++.+ +.|.+|++.... +.. +.+..+.
T Consensus 7 l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~--~~~---~~~~~~~ 81 (343)
T 1ri6_A 7 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDD--GAL---TFAAESA 81 (343)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTT--CCE---EEEEEEE
T ss_pred EEEeCCCCCeEEEEEECCCCcEEEeeeEecCCCCceEEECCCCCEEEEeecCCCeEEEEEecCCC--Cce---eeccccc
Confidence 55566889999999985 3333333333577789999999999999998876 999999997221 010 1223444
Q ss_pred CCCccEEEEEEccCCCEEEEEc-CCCcEEEEeC---CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSS-EDGTCLLWDI---NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl---~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.+. .+.+++|+|+++.+++++ .++.|.+||+ ..++.+..+.. ...+.+++|+|+++.+++++. .++.|
T Consensus 82 ~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~~~~~----~~~~v 153 (343)
T 1ri6_A 82 LPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG---LDGCHSANISPDNRTLWVPAL----KQDRI 153 (343)
T ss_dssp CSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC---CTTBCCCEECTTSSEEEEEEG----GGTEE
T ss_pred cCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCCccccccccccC---CCCceEEEECCCCCEEEEecC----CCCEE
Confidence 444 788999999999776554 5899999999 44456666665 467899999999998887753 57899
Q ss_pred EEEEeC--CcEEE----Ee--ecCCCeEEEEEeeCCCCCcceEEE-EEeCCCeEEEEeCCC--CeE--EEEecC---CC-
Q psy10778 449 RLHTIN--AQLIT----SL--ASELRITSVTFSNAPEGVSQNVIV-TGHSDGTIQLWSGYK--LAH--LLTLNT---NV- 511 (556)
Q Consensus 449 ~iwdi~--g~~i~----~~--~~~~~i~~i~~s~~pdg~~~~~l~-tg~~dg~I~iwd~~~--~~~--~~~~~~---~h- 511 (556)
++||++ ++... .. .....+.+++|+ |++ ++++ ++..++.|.+|++.. ++. ...+.. ++
T Consensus 154 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--pdg---~~l~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~ 228 (343)
T 1ri6_A 154 CLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFH--PNE---QYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFS 228 (343)
T ss_dssp EEEEECTTSCEEEEEEEEEECSTTCCEEEEEEC--TTS---SEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCC
T ss_pred EEEEecCCCceeeecccccccCCCCCcceEEEC--CCC---CEEEEEeCCCCEEEEEEecCCCCcEEEEeeccccCcccc
Confidence 999996 44322 22 234578899999 888 6554 555889999999943 332 233321 11
Q ss_pred -CCCeEEEEEecCCCEEE-EEcCCCcEEEEEcCC
Q psy10778 512 -ALPVIAVTYSCDSQHLY-ASNTEGLVIIWESSS 543 (556)
Q Consensus 512 -~~~V~~l~~s~dg~~l~-sgs~Dg~V~vwdl~~ 543 (556)
...+.+++|+|+|+.|+ ++..++.|.+|++..
T Consensus 229 ~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~ 262 (343)
T 1ri6_A 229 DTRWAADIHITPDGRHLYACDRTASLITVFSVSE 262 (343)
T ss_dssp SCCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred ccCCccceEECCCCCEEEEEecCCCEEEEEEEcC
Confidence 34677899999998877 455789999999983
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.6e-18 Score=182.79 Aligned_cols=206 Identities=17% Similarity=0.192 Sum_probs=156.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc-------ccccccCCCeEeeCCCccEEEEEEccCCCEEE----E
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNAST-------NKIEFCKPPTILLGHSACVTDLYLCAGFSVAV----S 392 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~-------~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~----s 392 (556)
...++.+++++++.++++|+.|+ +++|+....... ........ .....+...|++++|+|++++|+ +
T Consensus 36 ~~~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~l~~spdg~~lav~~~s 113 (434)
T 2oit_A 36 KERSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQ-GLLVPMKFPIHHLALSCDNLTLSACMMS 113 (434)
T ss_dssp CSCCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCC-CEEECCSSCEEEEEECTTSCEEEEEEEE
T ss_pred CCCccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCc-cccccCCCcccEEEEcCCCCEEEEEEec
Confidence 34578999999999999999888 889876432110 00000011 12234677899999999999999 8
Q ss_pred EcCCCcEEEEeCCCC--------e---EEEEeCCCCCCCCeeEEEEeCC-CCeEEEEeecCcCCCCeEEEEEeC-CcEEE
Q psy10778 393 SSEDGTCLLWDINTI--------G---YIREIPCVDPNTPVSHVTMSET-NGEIASVLQTTKTGGSILRLHTIN-AQLIT 459 (556)
Q Consensus 393 gs~Dg~I~iwdl~~~--------~---~v~~l~~~h~~~~V~~l~~sp~-~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~ 459 (556)
|+.|++|++||+.++ + .++.+.+ | ...|.+++|+|+ +..+++++ .|++|++||++ +..+.
T Consensus 114 gs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~-h-~~~V~~v~~~p~~~~~las~s-----~Dg~v~iwD~~~~~~~~ 186 (434)
T 2oit_A 114 SEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKD-A-GGMVIDMKWNPTVPSMVAVCL-----ADGSIAVLQVTETVKVC 186 (434)
T ss_dssp TTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCS-G-GGSEEEEEECSSCTTEEEEEE-----TTSCEEEEEESSSEEEE
T ss_pred cCCCceEEEEEccccccCCcCCcceeeeeeccCC-C-CCceEEEEECCCCCCEEEEEE-----CCCeEEEEEcCCCccee
Confidence 899999999998754 1 2455666 8 889999999998 78889898 89999999998 43333
Q ss_pred -EeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCCeEEEEEecCCCEEEE-Ec
Q psy10778 460 -SLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NVALPVIAVTYSCDSQHLYA-SN 531 (556)
Q Consensus 460 -~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~dg~~l~s-gs 531 (556)
...|...+.+++|+ |+| ++|++|+.||.|++||.+ ++....+.. .|...|.+++|++++.++++ ++
T Consensus 187 ~~~~~~~~v~~v~ws--pdg---~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~~~l~~~~~ 260 (434)
T 2oit_A 187 ATLPSTVAVTSVCWS--PKG---KQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTYVFAIVYAA 260 (434)
T ss_dssp EEECGGGCEEEEEEC--TTS---SCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETTEEEEEEEE
T ss_pred eccCCCCceeEEEEc--CCC---CEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCceEEEEEcc
Confidence 33467899999999 889 899999999999999997 666665542 12238999999999877754 33
Q ss_pred CCC------cEEEEEcCCC
Q psy10778 532 TEG------LVIIWESSSH 544 (556)
Q Consensus 532 ~Dg------~V~vwdl~~~ 544 (556)
.|| .+++|++.+.
T Consensus 261 ~dg~~~~~~~v~i~~l~~~ 279 (434)
T 2oit_A 261 ADGTLETSPDVVMALLPKK 279 (434)
T ss_dssp TTCCSSSCCEEEEEECCCT
T ss_pred CCCccCCCCceEEEEeccC
Confidence 443 3899999874
|
| >1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=5.4e-18 Score=183.70 Aligned_cols=228 Identities=16% Similarity=0.170 Sum_probs=179.9
Q ss_pred eEEeccCCCeEEEEeC--CCCCCcceEcCCCCCceEEEEEcC----CCCEEEEEe-CCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMS--KELPATPVIRPPLGATIATATTAP----DCHTLWLGL-TSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~--~~~~~~~~~~~~h~~~V~~i~~s~----dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
++.+++.|++|++||+ .+++.+..+. +...+..++|+| +|+++++++ .+++|.+||..+. ++
T Consensus 192 ~l~v~~~d~~V~v~D~~~~t~~~~~~i~--~g~~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~---------~~ 260 (543)
T 1nir_A 192 YLLVIGRDARIDMIDLWAKEPTKVAEIK--IGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL---------EP 260 (543)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEE--CCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC---------CE
T ss_pred EEEEECCCCeEEEEECcCCCCcEEEEEe--cCCCcceEEeCCCcCCCCCEEEEEEccCCeEEEEecccc---------cc
Confidence 7777788899999999 7776666665 456789999999 999999998 4899999997655 33
Q ss_pred CeEeeC----------CC-ccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEE--EeCCCCCCCCeeEEEEeCCCCe
Q psy10778 368 PTILLG----------HS-ACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIR--EIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 368 ~~~l~~----------h~-~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~--~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
+..+.. |. ..+.++.+++++. ++++...++.|.+||+.+++.+. .+.. ...+..++|+|++++
T Consensus 261 ~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~---~~~~~~~~~spdg~~ 337 (543)
T 1nir_A 261 KQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGA---APFLHDGGWDSSHRY 337 (543)
T ss_dssp EEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEEC---CSSCCCEEECTTSCE
T ss_pred ceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEecc---CcCccCceECCCCCE
Confidence 444443 22 3789999999776 56778889999999998865443 5543 567889999999998
Q ss_pred EEEEeecCcCCCCeEEEEEeC-CcEEEEee-----cCCCeEEEEEeeCCC-CCcceEEEEEe-CCCeEEEEeCCC-----
Q psy10778 434 IASVLQTTKTGGSILRLHTIN-AQLITSLA-----SELRITSVTFSNAPE-GVSQNVIVTGH-SDGTIQLWSGYK----- 500 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-----~~~~i~~i~~s~~pd-g~~~~~l~tg~-~dg~I~iwd~~~----- 500 (556)
+++++. .+++|.+||+. ++++..+. |.+....+ ++ |+ + .+++++. .|++|.+||+.+
T Consensus 338 l~va~~----~~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~~-~~--p~~g---~~~~s~~~~d~~V~v~d~~~~~~~~ 407 (543)
T 1nir_A 338 FMTAAN----NSNKVAVIDSKDRRLSALVDVGKTPHPGRGANF-VH--PKYG---PVWSTSHLGDGSISLIGTDPKNHPQ 407 (543)
T ss_dssp EEEEEG----GGTEEEEEETTTTEEEEEEECSSSBCCTTCEEE-EE--TTTE---EEEEEEBSSSSEEEEEECCTTTCTT
T ss_pred EEEEec----CCCeEEEEECCCCeEEEeeccCCCCCCCCCccc-CC--CCCc---cEEEeccCCCceEEEEEeCCCCCch
Confidence 877663 57899999997 78777775 33333333 35 66 5 6777776 689999999988
Q ss_pred --CeEEEEecCCCCCCeEEEEEecCCCEEEEEc-------CCCcEEEEEcCCCCCc
Q psy10778 501 --LAHLLTLNTNVALPVIAVTYSCDSQHLYASN-------TEGLVIIWESSSHNRT 547 (556)
Q Consensus 501 --~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs-------~Dg~V~vwdl~~~~~~ 547 (556)
++.++++. .|...+..++++|+++.|++++ .+++|.|||+.+.+..
T Consensus 408 ~~~~~v~~l~-~~g~~~~~v~~~pdg~~l~v~~~~~~~~~~~~~v~v~d~~~~~~~ 462 (543)
T 1nir_A 408 YAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVAVFDLKNLDAK 462 (543)
T ss_dssp TBTSEEEEEE-CSCSCCCCEECCTTCCEEEECCTTCSSHHHHTCEEEEETTCTTSC
T ss_pred hcCeEEEEEE-cCCCCceEEEcCCCCCcEEEecCCCCCcccCceEEEEECCCCCCC
Confidence 89999998 7778889999999999999987 2779999999997765
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.80 E-value=1.9e-17 Score=167.82 Aligned_cols=223 Identities=11% Similarity=0.097 Sum_probs=174.2
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCc----
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSA---- 376 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~---- 376 (556)
++.|.+||..+++....+.. ...+.+++++++|+.++++ ..++.|.+||..++ +.+..+..+..
T Consensus 68 ~~~v~~~d~~~~~~~~~~~~--~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~---------~~~~~~~~~~~~~~~ 136 (353)
T 3vgz_A 68 GGVVYRLDPVTLEVTQAIHN--DLKPFGATINNTTQTLWFGNTVNSAVTAIDAKTG---------EVKGRLVLDDRKRTE 136 (353)
T ss_dssp SEEEEEECTTTCCEEEEEEE--SSCCCSEEEETTTTEEEEEETTTTEEEEEETTTC---------CEEEEEESCCCCCCS
T ss_pred CccEEEEcCCCCeEEEEEec--CCCcceEEECCCCCEEEEEecCCCEEEEEeCCCC---------eeEEEEecCCCcccc
Confidence 78999999998887776653 3457789999999966554 55799999998765 33344444332
Q ss_pred -----cEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 377 -----CVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 377 -----~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
.+.+++|+|+++.+++++ .++.|.+||+.+++.+..+.. + ...+..++|+|+++.+++++ .++.|.
T Consensus 137 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~-----~~~~i~ 209 (353)
T 3vgz_A 137 EVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQN-T-GKMSTGLALDSEGKRLYTTN-----ADGELI 209 (353)
T ss_dssp SCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECC-C-CTTCCCCEEETTTTEEEEEC-----TTSEEE
T ss_pred ccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecC-C-CCccceEEECCCCCEEEEEc-----CCCeEE
Confidence 278999999999777665 588999999999999999885 4 56689999999999999988 789999
Q ss_pred EEEeC-CcEEEEeec-----CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 450 LHTIN-AQLITSLAS-----ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 450 iwdi~-g~~i~~~~~-----~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
+||+. ++.+..+.. ...+.+++|+ |+| +.+++++ .++.|.+||..+++.+..+..+ . ..+++|+|
T Consensus 210 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~--~-~~~~~~s~ 281 (353)
T 3vgz_A 210 TIDTADNKILSRKKLLDDGKEHFFINISLD--TAR---QRAFITDSKAAEVLVVDTRNGNILAKVAAP--E-SLAVLFNP 281 (353)
T ss_dssp EEETTTTEEEEEEECCCSSSCCCEEEEEEE--TTT---TEEEEEESSSSEEEEEETTTCCEEEEEECS--S-CCCEEEET
T ss_pred EEECCCCeEEEEEEcCCCCCCcccceEEEC--CCC---CEEEEEeCCCCEEEEEECCCCcEEEEEEcC--C-CceEEECC
Confidence 99997 666666643 4467889999 888 6555554 5599999999999998888732 2 25799999
Q ss_pred CCCEEEEEc-CCCcEEEEEcCCCCCcCee
Q psy10778 523 DSQHLYASN-TEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 523 dg~~l~sgs-~Dg~V~vwdl~~~~~~~~~ 550 (556)
+|+.+++++ .++.|.+||+.+++.+..+
T Consensus 282 dg~~l~v~~~~~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 282 ARNEAYVTHRQAGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp TTTEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEECCCCeEEEEE
Confidence 999665554 7899999999887655444
|
| >1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=2.8e-17 Score=165.47 Aligned_cols=229 Identities=10% Similarity=0.098 Sum_probs=160.1
Q ss_pred eEEeccC-CCeEEEEeCC--CCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNEC-DNLIRLKMSK--ELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~-Dg~I~lw~~~--~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++++++. ++.|++|++. +++............+.+++|+|+|++|++++. ++.|.+|++..+ ... +....
T Consensus 51 ~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~-~~~-----~~~~~ 124 (343)
T 1ri6_A 51 YLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG-LPV-----GVVDV 124 (343)
T ss_dssp EEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETT-EEE-----EEEEE
T ss_pred EEEEeecCCCeEEEEEecCCCCceeeccccccCCCCcEEEEcCCCCEEEEEecCCCeEEEEECCCC-ccc-----ccccc
Confidence 4444444 5999999987 554333222222337889999999998877664 889999999511 000 22233
Q ss_pred eeCCCccEEEEEEccCCCEEEEEc-CCCcEEEEeCCC-CeEEE----EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSS-EDGTCLLWDINT-IGYIR----EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~-~~~v~----~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
+..+ ..+.+++|+|+++.+++++ .++.|.+||+.+ ++... .+.... ...+..++|+|+++.+++++. .
T Consensus 125 ~~~~-~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~pdg~~l~~~~~----~ 198 (343)
T 1ri6_A 125 VEGL-DGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVE-GAGPRHMVFHPNEQYAYCVNE----L 198 (343)
T ss_dssp ECCC-TTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECST-TCCEEEEEECTTSSEEEEEET----T
T ss_pred ccCC-CCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCC-CCCcceEEECCCCCEEEEEeC----C
Confidence 3333 4588999999999777776 899999999987 64432 222202 467889999999997766653 6
Q ss_pred CCeEEEEEeC---CcE--EEEee---c----CCCeEEEEEeeCCCCCcceEEE-EEeCCCeEEEEeCC----CCeEEEEe
Q psy10778 445 GSILRLHTIN---AQL--ITSLA---S----ELRITSVTFSNAPEGVSQNVIV-TGHSDGTIQLWSGY----KLAHLLTL 507 (556)
Q Consensus 445 d~~I~iwdi~---g~~--i~~~~---~----~~~i~~i~~s~~pdg~~~~~l~-tg~~dg~I~iwd~~----~~~~~~~~ 507 (556)
++.|.+|+++ ++. ..... . ...+.+++|+ |+| ++|+ ++..++.|.+||+. ..+.+..+
T Consensus 199 ~~~i~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--~dg---~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~ 273 (343)
T 1ri6_A 199 NSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAADIHIT--PDG---RHLYACDRTASLITVFSVSEDGSVLSKEGFQ 273 (343)
T ss_dssp TTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEEEEEEC--TTS---SEEEEEETTTTEEEEEEECTTSCCEEEEEEE
T ss_pred CCEEEEEEecCCCCcEEEEeeccccCccccccCCccceEEC--CCC---CEEEEEecCCCEEEEEEEcCCCCceEEeeee
Confidence 8899999995 322 22222 1 2356789999 888 6665 55579999999997 34555566
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcC
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~ 542 (556)
. .+ ..+.+++|+|+|+.|++++ .++.|.+|++.
T Consensus 274 ~-~~-~~~~~~~~s~dg~~l~~~~~~~~~v~v~~~d 307 (343)
T 1ri6_A 274 P-TE-TQPRGFNVDHSGKYLIAAGQKSHHISVYEIV 307 (343)
T ss_dssp E-CS-SSCCCEEECTTSSEEEEECTTTCEEEEEEEE
T ss_pred c-CC-CccceEEECCCCCEEEEecCCCCeEEEEEEc
Confidence 5 33 3488999999999888887 68999999664
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.79 E-value=4e-17 Score=165.76 Aligned_cols=225 Identities=8% Similarity=0.048 Sum_probs=160.6
Q ss_pred CCCeEEEEeCCCCCCcceEc-CCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeC-----
Q psy10778 301 CDNLIRLKMSKELPATPVIR-PPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLG----- 373 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~-~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~----- 373 (556)
.++.|++|++.++....... ..+...+..++|+|+|++|++++ .++.|.+|++..... . ..+..+..
T Consensus 61 ~~~~v~~~~~~~g~~~~~~~~~~~~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~---~---~~~~~~~~~~~~p 134 (347)
T 3hfq_A 61 DEGGIAAWQIDGQTAHKLNTVVAPGTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGA---L---TLTDTVQHSGHGP 134 (347)
T ss_dssp TEEEEEEEEEETTEEEEEEEEEEESCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSC---E---EEEEEEECCCCCS
T ss_pred CCceEEEEEecCCcEEEeeeeecCCCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCC---e---eecceeecCCCCC
Confidence 47899999997665333222 23567788999999999998887 779999999963211 0 11122211
Q ss_pred ----CCccEEEEEEccCCCEEEEEcCCCcEEEEeCC-CCeEE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 374 ----HSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN-TIGYI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 374 ----h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~-~~~~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
+...+.+++|+|+|+++++...++.|.+||+. +++.. ..+.. +....+..++|+|+|+++++++. .++
T Consensus 135 ~~~~~~~~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~-~~g~~p~~~~~spdg~~l~v~~~----~~~ 209 (347)
T 3hfq_A 135 RPEQDGSHIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTM-EAGFGPRHLVFSPDGQYAFLAGE----LSS 209 (347)
T ss_dssp STTCSSCCEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEEC-CTTCCEEEEEECTTSSEEEEEET----TTT
T ss_pred CccccCCCceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEc-CCCCCCceEEECCCCCEEEEEeC----CCC
Confidence 23358899999999977777789999999998 55432 22232 21457889999999997777653 678
Q ss_pred eEEEEEeC---CcE--EEEeec-C------CCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCC---CCeEEEEecCC
Q psy10778 447 ILRLHTIN---AQL--ITSLAS-E------LRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGY---KLAHLLTLNTN 510 (556)
Q Consensus 447 ~I~iwdi~---g~~--i~~~~~-~------~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~---~~~~~~~~~~~ 510 (556)
.|.+|+++ ++. +..... . ..+..++|+ |+| ++| +++..++.|.+|++. ..+.+..+. .
T Consensus 210 ~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s--pdG---~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~-~ 283 (347)
T 3hfq_A 210 QIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLS--HDG---HFLYVSNRGYNTLAVFAVTADGHLTLIQQIS-T 283 (347)
T ss_dssp EEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEEC--TTS---CEEEEEEETTTEEEEEEECGGGCEEEEEEEE-C
T ss_pred EEEEEEecCCCCceEEeeeeeecCCCCCCCCcceeEEEC--CCC---CEEEEEeCCCCEEEEEEECCCCcEEEeEEEe-c
Confidence 99999986 332 222221 1 458899999 999 666 566678999999986 235555665 4
Q ss_pred CCCCeEEEEEecCCCEEEEEcCC-CcEEEEEcC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTE-GLVIIWESS 542 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~D-g~V~vwdl~ 542 (556)
+...+.+++|+|||++|++++.+ +.|.+|++.
T Consensus 284 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~d 316 (347)
T 3hfq_A 284 EGDFPRDFDLDPTEAFVVVVNQNTDNATLYARD 316 (347)
T ss_dssp SSSCCCEEEECTTSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcCeEEECCCCCEEEEEEcCCCcEEEEEEe
Confidence 55678999999999988887754 899999664
|
| >3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans} | Back alignment and structure |
|---|
Probab=99.79 E-value=3.5e-17 Score=164.64 Aligned_cols=227 Identities=9% Similarity=0.046 Sum_probs=166.2
Q ss_pred eEEeccCCCeEEEEeCCCCCC-cceEcCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPA-TPVIRPPLGATIATATTAPDCHTLWLGLTSG---NILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~-~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg---~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+++.+..++.|++||..+++. ...+. .+.....+++|+|+|++++++..++ .|.+||+..+ +.+..
T Consensus 54 l~~~~~~~~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~---------~~~~~ 123 (331)
T 3u4y_A 54 VVVTSDFCQTLVQIETQLEPPKVVAIQ-EGQSSMADVDITPDDQFAVTVTGLNHPFNMQSYSFLKN---------KFIST 123 (331)
T ss_dssp EEEEESTTCEEEEEECSSSSCEEEEEE-ECSSCCCCEEECTTSSEEEECCCSSSSCEEEEEETTTT---------EEEEE
T ss_pred EEEEeCCCCeEEEEECCCCceeEEecc-cCCCCccceEECCCCCEEEEecCCCCcccEEEEECCCC---------CeEEE
Confidence 566666789999999998876 44443 4445554599999999999665553 8999998765 23344
Q ss_pred eeCCCccEEEEEEccCCCE-EEEEcCCCc-EEEEeCCCCeEE-----EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 371 LLGHSACVTDLYLCAGFSV-AVSSSEDGT-CLLWDINTIGYI-----REIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~-l~sgs~Dg~-I~iwdl~~~~~v-----~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
+.. .....+++|+|+|+. ++++..++. +.+|++.....+ ..+.. ...+..++|+|+++.+++++.
T Consensus 124 ~~~-~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~spdg~~l~v~~~---- 195 (331)
T 3u4y_A 124 IPI-PYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISG---GTRPFNITFTPDGNFAFVANL---- 195 (331)
T ss_dssp EEC-CTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECS---SSSEEEEEECTTSSEEEEEET----
T ss_pred EEC-CCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccC---CCCccceEECCCCCEEEEEeC----
Confidence 443 345689999999984 455566688 999998754322 33333 567899999999997766653
Q ss_pred CCCeEEEEEeC-CcE---EEEeecCCCeEEEEEeeCCCCCcceEEEEE-eCCCeEEEEeCCCCeE--EEEecCC---CCC
Q psy10778 444 GGSILRLHTIN-AQL---ITSLASELRITSVTFSNAPEGVSQNVIVTG-HSDGTIQLWSGYKLAH--LLTLNTN---VAL 513 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg-~~dg~I~iwd~~~~~~--~~~~~~~---h~~ 513 (556)
.++.|++||++ ++. +..+.....+.+++|+ |+| ++++++ ..++.|.+||..+++. +..+... +..
T Consensus 196 ~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~s--pdg---~~l~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~ 270 (331)
T 3u4y_A 196 IGNSIGILETQNPENITLLNAVGTNNLPGTIVVS--RDG---STVYVLTESTVDVFNFNQLSGTLSFVKSFGHGLLIDPR 270 (331)
T ss_dssp TTTEEEEEECSSTTSCEEEEEEECSSCCCCEEEC--TTS---SEEEEECSSEEEEEEEETTTTEEEEEEEEECCCCCCCG
T ss_pred CCCeEEEEECCCCcccceeeeccCCCCCceEEEC--CCC---CEEEEEEcCCCEEEEEECCCCceeeecccccccccCCC
Confidence 67899999997 666 7777777888999999 899 766554 4578899999998877 4444311 112
Q ss_pred ---CeEEEEEecCCCEEEEEc-CCCcEEEEEcCCC
Q psy10778 514 ---PVIAVTYSCDSQHLYASN-TEGLVIIWESSSH 544 (556)
Q Consensus 514 ---~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~~~ 544 (556)
....++|+|||+.|++++ .++.|.+||+.+.
T Consensus 271 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~ 305 (331)
T 3u4y_A 271 PLFGANQMALNKTETKLFISANISRELKVFTISGK 305 (331)
T ss_dssp GGTTCCCEEECTTSSEEEEEETTTTEEEEEETTSC
T ss_pred CcccccceEECCCCCEEEEecCCCCcEEEEEecCC
Confidence 235689999999886554 5679999999773
|
| >2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-17 Score=163.89 Aligned_cols=218 Identities=11% Similarity=-0.021 Sum_probs=162.9
Q ss_pred eEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
++++++ ++.|++|+..+ ++........+...+.+++|+|+|++|++++ .++...||.++... .....+
T Consensus 55 ~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~--------~~~~~~ 125 (297)
T 2ojh_A 55 YLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTG--------GTPRLM 125 (297)
T ss_dssp EEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTC--------CCCEEC
T ss_pred EEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEEEECCC--------CceEEe
Confidence 566655 88999999998 7666555433357889999999999999998 44678888776431 122334
Q ss_pred eCCCccEEEEEEccCCCEEE-EEcCCCcEEEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 372 LGHSACVTDLYLCAGFSVAV-SSSEDGTCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~-sgs~Dg~I~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
..+. .+.+++|+|+++.++ +++.++.+.+|++.. ......+.. + ...+.+++|+|+++.+++++. .++.++
T Consensus 126 ~~~~-~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~-~-~~~~~~~~~s~dg~~l~~~~~----~~~~~~ 198 (297)
T 2ojh_A 126 TKNL-PSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTH-G-EGRNDGPDYSPDGRWIYFNSS----RTGQMQ 198 (297)
T ss_dssp CSSS-SEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCC-S-SSCEEEEEECTTSSEEEEEEC----TTSSCE
T ss_pred ecCC-CccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEccc-C-CCccccceECCCCCEEEEEec----CCCCcc
Confidence 4343 488999999999776 788899999998532 233455655 6 788999999999998887762 478888
Q ss_pred EEEeC--CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCC-----------CeEEEEeCCCCeE--EEEecCCCCC
Q psy10778 450 LHTIN--AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSD-----------GTIQLWSGYKLAH--LLTLNTNVAL 513 (556)
Q Consensus 450 iwdi~--g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----------g~I~iwd~~~~~~--~~~~~~~h~~ 513 (556)
+|+++ +..+..+ .+...+.+++|+ |+| ++|++++.+ +.|++||+.+++. +..+. +|..
T Consensus 199 i~~~~~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~-~~~~ 272 (297)
T 2ojh_A 199 IWRVRVDGSSVERITDSAYGDWFPHPS--PSG---DKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNVETLFDLF-GGQG 272 (297)
T ss_dssp EEEEETTSSCEEECCCCSEEEEEEEEC--TTS---SEEEEEEEETTCCSCCSSEEEEEEEEETTSCSCEEEEEEE-ESTT
T ss_pred EEEECCCCCCcEEEecCCcccCCeEEC--CCC---CEEEEEEcCCCCCcccccCceEEEEEecCCCCceeeeccC-CCCc
Confidence 88875 4444444 455678899999 899 788877755 5699999987765 34443 5678
Q ss_pred CeEEEEEecCCCEEEEEcCCC
Q psy10778 514 PVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg 534 (556)
.+.+++|+|+++.|++++.+.
T Consensus 273 ~~~~~~~spdg~~l~~~~~~~ 293 (297)
T 2ojh_A 273 TMNSPNWSPDGDEFAYVRYFP 293 (297)
T ss_dssp TSCSCCBCTTSSEEEEEEECC
T ss_pred ccccceECCCCCEEEEEEecc
Confidence 899999999999998877653
|
| >2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.3e-17 Score=175.81 Aligned_cols=235 Identities=12% Similarity=0.053 Sum_probs=161.4
Q ss_pred eEEeccCCCeEEEEeCCCC--------CCcc------eEcCCCCCceEEEEEcCCCCEEE----EEeCCCcEEEEEeeec
Q psy10778 295 MICWNECDNLIRLKMSKEL--------PATP------VIRPPLGATIATATTAPDCHTLW----LGLTSGNILVYEYELN 356 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~--------~~~~------~~~~~h~~~V~~i~~s~dg~~l~----tgs~Dg~I~vwd~~~~ 356 (556)
+++.|+.|+ +++|+.... .... .....+...|++++|+|+|++|+ +|+.|++|+|||+...
T Consensus 50 ~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~ 128 (434)
T 2oit_A 50 LVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLVPMKFPIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTF 128 (434)
T ss_dssp EEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEECCSSCEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHH
T ss_pred EEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccccCCCcccEEEEcCCCCEEEEEEeccCCCceEEEEEcccc
Confidence 677777777 777654211 0001 11124567899999999999999 7889999999998764
Q ss_pred cCcc-cc-cccCCCeEeeCCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 357 ASTN-KI-EFCKPPTILLGHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 357 ~~~~-~~-~~~~~~~~l~~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
.... .. ........+.+|...|++++|+|+ +.++++++.||+|++||++++..+..... | ...|.+++|+|+|.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~-~-~~~v~~v~wspdg~~ 206 (434)
T 2oit_A 129 SNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLP-S-TVAVTSVCWSPKGKQ 206 (434)
T ss_dssp HCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEEC-G-GGCEEEEEECTTSSC
T ss_pred ccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccC-C-CCceeEEEEcCCCCE
Confidence 1100 00 000113456789999999999998 78999999999999999999877766666 7 789999999999999
Q ss_pred EEEEeecCcCCCCeEEEEEeCCcEEEEeec--------CCCeEEEEEeeCCCCCcceEEEE-EeCCC------eEEEEeC
Q psy10778 434 IASVLQTTKTGGSILRLHTINAQLITSLAS--------ELRITSVTFSNAPEGVSQNVIVT-GHSDG------TIQLWSG 498 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~--------~~~i~~i~~s~~pdg~~~~~l~t-g~~dg------~I~iwd~ 498 (556)
|++++ .|+.|++||++++....+.. ...+.+++|+ +++ .++++ +..+| .+++|++
T Consensus 207 lasgs-----~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~v~w~--~~~---~~l~~~~~~dg~~~~~~~v~i~~l 276 (434)
T 2oit_A 207 LAVGK-----QNGTVVQYLPTLQEKKVIPCPPFYESDHPVRVLDVLWI--GTY---VFAIVYAAADGTLETSPDVVMALL 276 (434)
T ss_dssp EEEEE-----TTSCEEEECTTCCEEEEECCCTTCCTTSCEEEEEEEEE--ETT---EEEEEEEETTCCSSSCCEEEEEEC
T ss_pred EEEEc-----CCCcEEEEccCCcccccccCCcccCCCCceeEEEEEEe--cCc---eEEEEEccCCCccCCCCceEEEEe
Confidence 99999 89999999999766655532 1278999999 666 55544 43443 3899998
Q ss_pred CCCe-----EEEEecC------CCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcC
Q psy10778 499 YKLA-----HLLTLNT------NVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542 (556)
Q Consensus 499 ~~~~-----~~~~~~~------~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~ 542 (556)
...+ ....+.. +...+-..+..-++.+++++++ ..+.|.|....
T Consensus 277 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~l~dw~l~~v~s~~s~dv~vl~~~ 332 (434)
T 2oit_A 277 PKKEEKHPEIFVNFMEPCYGSCTERQHHYYLSYIEEWDLVLAASAASTEVSILARQ 332 (434)
T ss_dssp CCTTTCCCCEEEECCCSSCCCCSSSCCCEEEEEEGGGTEEEEEETTCSBCEEEEEC
T ss_pred ccCCCCCCcceEecccCCCCCCCCcCcceeeehhccCCEEEEecCCCCceeEEEec
Confidence 7542 2222211 1122233344446766666544 34556666543
|
| >3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=1.6e-16 Score=160.88 Aligned_cols=218 Identities=13% Similarity=0.086 Sum_probs=172.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC--------ceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA--------TIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~--------~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
+++.+..++.|.+||..+++....+...+.. .+.+++|+|+|+.+++++ .++.|.+||..++
T Consensus 103 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~-------- 174 (353)
T 3vgz_A 103 LWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVDGGNI-------- 174 (353)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEETTTT--------
T ss_pred EEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEcCCCC--------
Confidence 6667777899999999998877776643322 278999999999888776 4788999998765
Q ss_pred cCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC---CCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV---DPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 365 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~---h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
+....+..+...+.+++|+|+++.+++++.++.+.+||+.+++.+..+... + ...+..++++|+++.+++++.
T Consensus 175 -~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~dg~~l~~~~~-- 250 (353)
T 3vgz_A 175 -KLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGK-EHFFINISLDTARQRAFITDS-- 250 (353)
T ss_dssp -EEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSS-CCCEEEEEEETTTTEEEEEES--
T ss_pred -ceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCC-CcccceEEECCCCCEEEEEeC--
Confidence 333555545666889999999999999999999999999999888776530 2 345788999999998877763
Q ss_pred cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEE
Q psy10778 442 KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVT 519 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~ 519 (556)
.++.|.+||+. ++.+..+..... .+++|+ |+| +.+ ++...++.|.+||..+++.+..+.. ...+.+++
T Consensus 251 --~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s--~dg---~~l~v~~~~~~~v~~~d~~~~~~~~~~~~--~~~~~~~~ 320 (353)
T 3vgz_A 251 --KAAEVLVVDTRNGNILAKVAAPES-LAVLFN--PAR---NEAYVTHRQAGKVSVIDAKSYKVVKTFDT--PTHPNSLA 320 (353)
T ss_dssp --SSSEEEEEETTTCCEEEEEECSSC-CCEEEE--TTT---TEEEEEETTTTEEEEEETTTTEEEEEEEC--CSEEEEEE
T ss_pred --CCCEEEEEECCCCcEEEEEEcCCC-ceEEEC--CCC---CEEEEEECCCCeEEEEECCCCeEEEEEec--CCCCCeEE
Confidence 56899999996 777777765443 679999 888 644 5555789999999999999988872 45789999
Q ss_pred EecCCCEEEEEcCCC
Q psy10778 520 YSCDSQHLYASNTEG 534 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg 534 (556)
|+|+|++|+++..++
T Consensus 321 ~s~dg~~l~v~~~~~ 335 (353)
T 3vgz_A 321 LSADGKTLYVSVKQK 335 (353)
T ss_dssp ECTTSCEEEEEEECC
T ss_pred EcCCCCEEEEEEccc
Confidence 999999877776653
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.76 E-value=7.3e-18 Score=188.58 Aligned_cols=229 Identities=13% Similarity=0.018 Sum_probs=166.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC---ceEEEEEcCCCCEEEEEeCC---------CcEEEEEeeeccCcccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA---TIATATTAPDCHTLWLGLTS---------GNILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~---~V~~i~~s~dg~~l~tgs~D---------g~I~vwd~~~~~~~~~~ 362 (556)
+++. +.||+|++|+..+++....+. .|.. .|.+++|+|||++|++++.+ +.+++||+.++..
T Consensus 30 ~~~~-~~dg~i~~~d~~~g~~~~~~~-~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~---- 103 (723)
T 1xfd_A 30 FIYR-EQKGTVRLWNVETNTSTVLIE-GKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP---- 103 (723)
T ss_dssp BCCC-CSSSCEEEBCGGGCCCEEEEC-TTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC----
T ss_pred EEEE-eCCCCEEEEECCCCcEEEEec-cccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCce----
Confidence 4444 689999999999988776664 4443 49999999999999999864 7888999887511
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCe------------------eE
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV------------------SH 424 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V------------------~~ 424 (556)
..+....+|...+..++|||+|+.|++++. +.|++||+.+++..+.... + ...+ .+
T Consensus 104 ---~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~-~-~~~~~~~g~~~~v~~ee~~~~~~~ 177 (723)
T 1xfd_A 104 ---QSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVST-G-KEGVIYNGLSDWLYEEEILKTHIA 177 (723)
T ss_dssp ---EECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECC-C-BTTTEEEEECCHHHHHTTSSSSEE
T ss_pred ---EeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecC-C-CCCceECcccceeEEEEeccCcce
Confidence 111222355566889999999999999886 7999999998877766654 3 3333 78
Q ss_pred EEEeCCCCeEEEEeecCc-----------------------------CCCCeEEEEEeC-CcEEEEeec-------CCCe
Q psy10778 425 VTMSETNGEIASVLQTTK-----------------------------TGGSILRLHTIN-AQLITSLAS-------ELRI 467 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~-----------------------------~~d~~I~iwdi~-g~~i~~~~~-------~~~i 467 (556)
++|||||+.|++++.+.. ..+..|++||+. ++....+.. ...+
T Consensus 178 ~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~ 257 (723)
T 1xfd_A 178 HWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYI 257 (723)
T ss_dssp EEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEE
T ss_pred EEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEECCCCceeEEeeCCccCCCcccee
Confidence 999999999998874310 012379999997 443344432 4578
Q ss_pred EEEEEeeCCCCCcceEEEEEeC----CCeEEEEeCCCCeEEEEecCCCCCCe----EEEEEecCCCEEEE--EcCCC---
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHS----DGTIQLWSGYKLAHLLTLNTNVALPV----IAVTYSCDSQHLYA--SNTEG--- 534 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~----dg~I~iwd~~~~~~~~~~~~~h~~~V----~~l~~s~dg~~l~s--gs~Dg--- 534 (556)
.+++|+ ||| ++|++... +..|++||+.+++....+...+...+ ..++|+|||+.|+. +..+|
T Consensus 258 ~~~~~S--pDg---~~l~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 332 (723)
T 1xfd_A 258 TMVKWA--TST---KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRG 332 (723)
T ss_dssp EEEEES--SSS---EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSS
T ss_pred EEEEEe--CCC---eEEEEEEcCCCCeEEEEEEeCCCCcceEEEEeccCCEEeccCCCceEcCCCCeEEEEEecccCCCc
Confidence 899999 999 78876643 35799999999887666542233433 37899999997764 45667
Q ss_pred ---cEEEEE
Q psy10778 535 ---LVIIWE 540 (556)
Q Consensus 535 ---~V~vwd 540 (556)
.|.+||
T Consensus 333 ~~~~l~~~d 341 (723)
T 1xfd_A 333 KFYHITVSS 341 (723)
T ss_dssp CEEEEEEEC
T ss_pred ceeEEEEEe
Confidence 567777
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-17 Score=185.00 Aligned_cols=230 Identities=10% Similarity=0.045 Sum_probs=169.2
Q ss_pred eEEeccC-CC-----eEEEEeCCCCCCcceEcCC-CC----------------------CceEEEEEcCCCCEEEEEeCC
Q psy10778 295 MICWNEC-DN-----LIRLKMSKELPATPVIRPP-LG----------------------ATIATATTAPDCHTLWLGLTS 345 (556)
Q Consensus 295 ~l~~gs~-Dg-----~I~lw~~~~~~~~~~~~~~-h~----------------------~~V~~i~~s~dg~~l~tgs~D 345 (556)
+|++++. |+ .|++|+..+++........ +. ..|.+++|+|||++|++++.
T Consensus 50 ~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~- 128 (741)
T 2ecf_A 50 RVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQWSPDAQRLLFPLG- 128 (741)
T ss_dssp EEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCEECTTSSEEEEEET-
T ss_pred EEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeEECCCCCEEEEEeC-
Confidence 5666666 77 8999999988766555421 11 23889999999999999986
Q ss_pred CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC----
Q psy10778 346 GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP---- 421 (556)
Q Consensus 346 g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~---- 421 (556)
+.|++||+.++.. .....+..|...+.+++|+|+|+.|++++ ++.|.+||+.+++..+.... + ...
T Consensus 129 ~~i~~~d~~~~~~-------~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~-~-~~~~~~g 198 (741)
T 2ecf_A 129 GELYLYDLKQEGK-------AAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTAD-G-STTIGNG 198 (741)
T ss_dssp TEEEEEESSSCST-------TSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCC-C-CSSEEES
T ss_pred CcEEEEECCCCCc-------ceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccC-C-ccceecc
Confidence 9999999876400 02345677888999999999999999887 46899999998876655444 3 322
Q ss_pred ------------eeEEEEeCCCCeEEEEeecCcC----------------------------CCCeEEEEEeCC-cEEEE
Q psy10778 422 ------------VSHVTMSETNGEIASVLQTTKT----------------------------GGSILRLHTINA-QLITS 460 (556)
Q Consensus 422 ------------V~~l~~sp~~~~i~s~s~~~~~----------------------------~d~~I~iwdi~g-~~i~~ 460 (556)
+..++|+|||+.|++++.+... ....|++||+++ .....
T Consensus 199 ~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~ 278 (741)
T 2ecf_A 199 IAEFVADEEMDRHTGYWWAPDDSAIAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQW 278 (741)
T ss_dssp CCCHHHHHHSCCCCSEEECTTSSCEEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEE
T ss_pred ccceeeeeccccccceEECCCCCEEEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEE
Confidence 4789999999999998732100 001788888865 43333
Q ss_pred ee----cCCCeEEEEEeeCCCCCcceEEEEEeC-----CCeEEEEeCCCCeEEEEecCCCCC----CeEEEEEecCCCEE
Q psy10778 461 LA----SELRITSVTFSNAPEGVSQNVIVTGHS-----DGTIQLWSGYKLAHLLTLNTNVAL----PVIAVTYSCDSQHL 527 (556)
Q Consensus 461 ~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~-----dg~I~iwd~~~~~~~~~~~~~h~~----~V~~l~~s~dg~~l 527 (556)
+. +...+.+++| + +| +.|++++. ++.|++||+.+++....+. .+.. .+.+++|+|||+++
T Consensus 279 ~~~~~~~~~~~~~~~~-p--Dg---~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~~-~~~~~~~~~~~~~~~spdg~~~ 351 (741)
T 2ecf_A 279 IDLGKEQDIYLARVNW-R--DP---QHLSFQRQSRDQKKLDLVEVTLASNQQRVLAH-ETSPTWVPLHNSLRFLDDGSIL 351 (741)
T ss_dssp ECCCSCSSEEEEEEEE-E--ET---TEEEEEEEETTSSEEEEEEEETTTCCEEEEEE-EECSSCCCCCSCCEECTTSCEE
T ss_pred ecCCCCcceEEEEEEe-C--CC---CEEEEEEecccCCeEEEEEEECCCCceEEEEE-cCCCCcCCcCCceEECCCCeEE
Confidence 32 4567889999 5 56 56665543 5789999999988776665 2322 45688999999999
Q ss_pred EEEcCCCcEEEEEcC
Q psy10778 528 YASNTEGLVIIWESS 542 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~ 542 (556)
++++.||.+.+|.+.
T Consensus 352 ~~~~~~g~~~l~~~~ 366 (741)
T 2ecf_A 352 WSSERTGFQHLYRID 366 (741)
T ss_dssp EEECTTSSCEEEEEC
T ss_pred EEecCCCccEEEEEc
Confidence 999999988888876
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.5e-16 Score=177.51 Aligned_cols=230 Identities=9% Similarity=0.024 Sum_probs=167.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeee-----ccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYEL-----NASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~-----~~~~~~~~~~~~~~ 369 (556)
.++.+ .|+.|++||..+++..... .+...+.+++|+|||+.|+++ .|+.|++|++.+ + +...
T Consensus 94 ~~~~~-~~~~i~~~d~~~~~~~~l~--~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g---------~~~~ 160 (706)
T 2z3z_A 94 LVVLF-TQGGLVGFDMLARKVTYLF--DTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMS---------RAIA 160 (706)
T ss_dssp EEEEE-ETTEEEEEETTTTEEEEEE--CCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCC---------CCEE
T ss_pred eEEEE-ECCEEEEEECCCCceEEcc--CCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCC---------CcEE
Confidence 44444 4599999999887655444 466778899999999999995 679999999986 4 1222
Q ss_pred EeeCCCc--------------cEEEEEEccCCCEEEEEc---------------------------------CCCcEEEE
Q psy10778 370 ILLGHSA--------------CVTDLYLCAGFSVAVSSS---------------------------------EDGTCLLW 402 (556)
Q Consensus 370 ~l~~h~~--------------~V~~l~~s~~~~~l~sgs---------------------------------~Dg~I~iw 402 (556)
....+.. .+.+++|+|||+.|++++ .++.|.+|
T Consensus 161 ~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~ 240 (706)
T 2z3z_A 161 VTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIY 240 (706)
T ss_dssp SCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEE
T ss_pred eccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEE
Confidence 2222222 258899999999999987 45789999
Q ss_pred eCCCCeEEEEeC--CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee---cCC---CeEEEEEe
Q psy10778 403 DINTIGYIREIP--CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA---SEL---RITSVTFS 473 (556)
Q Consensus 403 dl~~~~~v~~l~--~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~---~~~---~i~~i~~s 473 (556)
|+.+++...... . + ...+..++|+|+|+.|++++.+.......|++||+. ++....+. ... .+.+++|+
T Consensus 241 d~~~~~~~~~~~~~~-~-~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~s 318 (706)
T 2z3z_A 241 HLATGKTVYLQTGEP-K-EKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFL 318 (706)
T ss_dssp ETTTTEEEECCCCSC-T-TCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEEC
T ss_pred ECCCCceEeeccCCC-C-ceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceee
Confidence 999887654432 3 4 567999999999999998773221122489999997 52443332 222 24678999
Q ss_pred eCC--CCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCCeEE-EEEecCCCEEEEEcC-CC----cEEEEEcCCC
Q psy10778 474 NAP--EGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVALPVIA-VTYSCDSQHLYASNT-EG----LVIIWESSSH 544 (556)
Q Consensus 474 ~~p--dg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs~-Dg----~V~vwdl~~~ 544 (556)
| +| +++++++.+|.+++|++. +++.+..+. .+...+.+ ++|+|+|+.|+.++. ++ .|..|++.++
T Consensus 319 --p~~dg---~~l~~~~~~g~~~l~~~~~~~~~~~~l~-~~~~~v~~~~~~spdg~~l~~~~~~~~~~~~~l~~~d~~~~ 392 (706)
T 2z3z_A 319 --PGSNN---QFIWQSRRDGWNHLYLYDTTGRLIRQVT-KGEWEVTNFAGFDPKGTRLYFESTEASPLERHFYCIDIKGG 392 (706)
T ss_dssp --TTCSS---EEEEEECTTSSCEEEEEETTSCEEEECC-CSSSCEEEEEEECTTSSEEEEEESSSCTTCBEEEEEETTCC
T ss_pred --cCCCC---EEEEEEccCCccEEEEEECCCCEEEecC-CCCeEEEeeeEEcCCCCEEEEEecCCCCceEEEEEEEcCCC
Confidence 8 99 899999999999999875 677778886 56677877 799999987765544 44 6777777664
Q ss_pred C
Q psy10778 545 N 545 (556)
Q Consensus 545 ~ 545 (556)
+
T Consensus 393 ~ 393 (706)
T 2z3z_A 393 K 393 (706)
T ss_dssp C
T ss_pred C
Confidence 3
|
| >2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-16 Score=179.51 Aligned_cols=203 Identities=14% Similarity=0.151 Sum_probs=155.7
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CC-----cEEEEEeeeccCcccccccCCCeEeeCCC----------------------
Q psy10778 324 GATIATATTAPDCHTLWLGLT-SG-----NILVYEYELNASTNKIEFCKPPTILLGHS---------------------- 375 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~-Dg-----~I~vwd~~~~~~~~~~~~~~~~~~l~~h~---------------------- 375 (556)
...+.+++|+|||++|++++. |+ +|++||+.++ +....+..+.
T Consensus 36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 106 (741)
T 2ecf_A 36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSG---------QTRLLVDSKVVLPGTETLSDEEKARRERQRIA 106 (741)
T ss_dssp CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTC---------CEEEEECGGGTC--------------------
T ss_pred CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCC---------ceeEccchhhcccccccccchhhhhhhhhhhc
Confidence 456899999999999999998 88 8999998765 2222333222
Q ss_pred --ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe--EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 376 --ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG--YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 376 --~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
..|.+++|+|||+.|++++. +.|.+||+.++. .++.+.. + ...+..++|+|||+.|++++ ++.|++|
T Consensus 107 ~~~~v~~~~~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~-~-~~~~~~~~~SPDG~~la~~~------~~~i~~~ 177 (741)
T 2ecf_A 107 AMTGIVDYQWSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTH-G-EGFATDAKLSPKGGFVSFIR------GRNLWVI 177 (741)
T ss_dssp CCEESCCCEECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCC-S-SSCEEEEEECTTSSEEEEEE------TTEEEEE
T ss_pred cccCcceeEECCCCCEEEEEeC-CcEEEEECCCCCcceEEEccc-C-CcccccccCCCCCCEEEEEe------CCcEEEE
Confidence 33789999999999999886 999999999872 4455666 6 78899999999999999986 5699999
Q ss_pred EeCC-cEEEEeecCCC-----------------eEEEEEeeCCCCCcceEEEEEeCCC----------------------
Q psy10778 452 TINA-QLITSLASELR-----------------ITSVTFSNAPEGVSQNVIVTGHSDG---------------------- 491 (556)
Q Consensus 452 di~g-~~i~~~~~~~~-----------------i~~i~~s~~pdg~~~~~l~tg~~dg---------------------- 491 (556)
|+.+ +.......... +.+++|+ ||| +.|++++.|+
T Consensus 178 d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~S--pDg---~~l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~ 252 (741)
T 2ecf_A 178 DLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWA--PDD---SAIAYARIDESPVPVQKRYEVYADRTDVIEQR 252 (741)
T ss_dssp ETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEEC--TTS---SCEEEEEEECTTSCEEEEEEECSSCEEEEEEE
T ss_pred ecCCCCEEEeccCCccceeccccceeeeeccccccceEEC--CCC---CEEEEEEEcCCCCceEecCCCCCCcccceEee
Confidence 9984 44333222221 4789999 999 7888887665
Q ss_pred -----------eEEEEeCCC-CeEEEEecC-CCCCCeEEEEEecCCCEEEEEcC-----CCcEEEEEcCCCCCcCee
Q psy10778 492 -----------TIQLWSGYK-LAHLLTLNT-NVALPVIAVTYSCDSQHLYASNT-----EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 492 -----------~I~iwd~~~-~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~-----Dg~V~vwdl~~~~~~~~~ 550 (556)
.|++||+.+ ++....... .|...+.+++| |||+.|++++. ++.|++||+.+++....+
T Consensus 253 ~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~~~~~~~~~~~~~i~~~d~~~g~~~~~~ 328 (741)
T 2ecf_A 253 YPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLSFQRQSRDQKKLDLVEVTLASNQQRVLA 328 (741)
T ss_dssp CCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEEEEEEETTSSEEEEEEEETTTCCEEEEE
T ss_pred cCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEEEEEecccCCeEEEEEEECCCCceEEEE
Confidence 889999988 776554432 36778999999 99999987654 578999999887654433
|
| >2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.4e-15 Score=169.80 Aligned_cols=228 Identities=12% Similarity=0.044 Sum_probs=162.7
Q ss_pred eEEeccCCCeEEEEeCCC-----CCCcceEcCCCCCc--------------eEEEEEcCCCCEEEEEe------------
Q psy10778 295 MICWNECDNLIRLKMSKE-----LPATPVIRPPLGAT--------------IATATTAPDCHTLWLGL------------ 343 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~-----~~~~~~~~~~h~~~--------------V~~i~~s~dg~~l~tgs------------ 343 (556)
.++++ .|+.|++|++.+ ++...... .+... +.+++|+|||++|++++
T Consensus 134 ~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~-~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~ 211 (706)
T 2z3z_A 134 RVAYV-RNHNLYIARGGKLGEGMSRAIAVTI-DGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIV 211 (706)
T ss_dssp EEEEE-ETTEEEEEECBCTTSCCCCCEESCS-CCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEE
T ss_pred EEEEE-ECCeEEEEecCcccccCCCcEEecc-CCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEee
Confidence 56663 689999999988 76554433 22222 48999999999999997
Q ss_pred ---------------------CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC-----
Q psy10778 344 ---------------------TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG----- 397 (556)
Q Consensus 344 ---------------------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----- 397 (556)
.+..|++||+.++. .. .+.....|...+.+++|+|+|+.|++++.++
T Consensus 212 ~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~----~~---~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~ 284 (706)
T 2z3z_A 212 DYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGK----TV---YLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNEC 284 (706)
T ss_dssp ECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTE----EE---ECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEE
T ss_pred ccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCc----eE---eeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCee
Confidence 44678999987541 10 1111125777899999999999999887765
Q ss_pred cEEEEeCCCCeEEEEeC-CCCCCC---CeeEEEEeC--CCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEee-cCCCeE
Q psy10778 398 TCLLWDINTIGYIREIP-CVDPNT---PVSHVTMSE--TNGEIASVLQTTKTGGSILRLHTIN--AQLITSLA-SELRIT 468 (556)
Q Consensus 398 ~I~iwdl~~~~~v~~l~-~~h~~~---~V~~l~~sp--~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~-~~~~i~ 468 (556)
.|.+||+.+++..+.+. ..+ .. .+..++|+| +|+.++++. .++.+++|.++ +..+..+. +...+.
T Consensus 285 ~v~~~d~~~g~~~~~~~~~~~-~~~~~~~~~~~~sp~~dg~~l~~~~-----~~g~~~l~~~~~~~~~~~~l~~~~~~v~ 358 (706)
T 2z3z_A 285 KVNAYDAETGRFVRTLFVETD-KHYVEPLHPLTFLPGSNNQFIWQSR-----RDGWNHLYLYDTTGRLIRQVTKGEWEVT 358 (706)
T ss_dssp EEEEEETTTCCEEEEEEEEEC-SSCCCCCSCCEECTTCSSEEEEEEC-----TTSSCEEEEEETTSCEEEECCCSSSCEE
T ss_pred EEEEEECCCCceeeEEEEccC-CCeECccCCceeecCCCCEEEEEEc-----cCCccEEEEEECCCCEEEecCCCCeEEE
Confidence 89999999984433332 101 22 346789999 999888776 77888888774 66666664 445576
Q ss_pred E-EEEeeCCCCCcceEEEE-EeCCC----eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC----CcEEE
Q psy10778 469 S-VTFSNAPEGVSQNVIVT-GHSDG----TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE----GLVII 538 (556)
Q Consensus 469 ~-i~~s~~pdg~~~~~l~t-g~~dg----~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D----g~V~v 538 (556)
+ ++|+ |+| +.|+. +..++ .|..||+.+++ ...+. +...+.+++|+|||+.++.++.+ +.|++
T Consensus 359 ~~~~~s--pdg---~~l~~~~~~~~~~~~~l~~~d~~~~~-~~~l~--~~~~~~~~~~spdg~~l~~~~~~~~~p~~i~l 430 (706)
T 2z3z_A 359 NFAGFD--PKG---TRLYFESTEASPLERHFYCIDIKGGK-TKDLT--PESGMHRTQLSPDGSAIIDIFQSPTVPRKVTV 430 (706)
T ss_dssp EEEEEC--TTS---SEEEEEESSSCTTCBEEEEEETTCCC-CEESC--CSSSEEEEEECTTSSEEEEEEECSSCSCEEEE
T ss_pred eeeEEc--CCC---CEEEEEecCCCCceEEEEEEEcCCCC-ceecc--CCCceEEEEECCCCCEEEEEecCCCCCcEEEE
Confidence 6 7999 888 55554 55554 67777877665 44554 56779999999999988876544 56999
Q ss_pred EEcCCCC
Q psy10778 539 WESSSHN 545 (556)
Q Consensus 539 wdl~~~~ 545 (556)
||+.+++
T Consensus 431 ~d~~~~~ 437 (706)
T 2z3z_A 431 TNIGKGS 437 (706)
T ss_dssp EESSSCE
T ss_pred EECCCCe
Confidence 9998765
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=2.2e-16 Score=172.42 Aligned_cols=221 Identities=10% Similarity=-0.021 Sum_probs=160.6
Q ss_pred eEEeccC-CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEEeee--ccCcccccccCCC
Q psy10778 295 MICWNEC-DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT---SGNILVYEYEL--NASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~-Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~---Dg~I~vwd~~~--~~~~~~~~~~~~~ 368 (556)
.|++++. ||+++||++.+++.... ...+...+.+++|+|| +.+++++. +...++|.+.. .. ..
T Consensus 35 ~la~~s~~~g~~~lw~~~~g~~~~l-t~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~~g---------~~ 103 (582)
T 3o4h_A 35 KLLVVGFSEGSVNAYLYDGGETVKL-NREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSRPG---------EE 103 (582)
T ss_dssp EEEEEEEETTEEEEEEEETTEEEEC-CSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTSTT---------CC
T ss_pred eEEEEEccCCceeEEEEcCCCcEee-ecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccCCC---------cc
Confidence 5666665 99999999866554333 2233368999999999 77777775 56678888765 21 11
Q ss_pred eEeeCCCccEEEEEEccCCC--EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 369 TILLGHSACVTDLYLCAGFS--VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~--~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
..+..+ ..+...+|+|+++ .+++++.+ .+.+||+.+++..+.... + . .+++|+|||+.|++++.+.. ..+
T Consensus 104 ~~l~~~-~~~~~~~~s~dg~~~~~~s~~~~-~~~l~d~~~g~~~~l~~~-~--~--~~~~~spDG~~la~~~~~~~-~~~ 175 (582)
T 3o4h_A 104 QRLEAV-KPMRILSGVDTGEAVVFTGATED-RVALYALDGGGLRELARL-P--G--FGFVSDIRGDLIAGLGFFGG-GRV 175 (582)
T ss_dssp EECTTS-CSBEEEEEEECSSCEEEEEECSS-CEEEEEEETTEEEEEEEE-S--S--CEEEEEEETTEEEEEEEEET-TEE
T ss_pred ccccCC-CCceeeeeCCCCCeEEEEecCCC-CceEEEccCCcEEEeecC-C--C--ceEEECCCCCEEEEEEEcCC-CCe
Confidence 122222 2234568888875 44455444 455999998876655554 3 3 88999999999998773210 116
Q ss_pred eEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC--eEEEEeCCCCeEEEEecCCCCCCeEEEE----
Q psy10778 447 ILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG--TIQLWSGYKLAHLLTLNTNVALPVIAVT---- 519 (556)
Q Consensus 447 ~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg--~I~iwd~~~~~~~~~~~~~h~~~V~~l~---- 519 (556)
.|++||+. |+......+...+.+++|+ ||| +.|+++..+| .|++||+.+++.. .+. +|...+.+++
T Consensus 176 ~i~~~d~~~g~~~~l~~~~~~~~~~~~S--pDG---~~l~~~~~~~~~~i~~~d~~~~~~~-~~~-~~~~~~~~~~~~~~ 248 (582)
T 3o4h_A 176 SLFTSNLSSGGLRVFDSGEGSFSSASIS--PGM---KVTAGLETAREARLVTVDPRDGSVE-DLE-LPSKDFSSYRPTAI 248 (582)
T ss_dssp EEEEEETTTCCCEEECCSSCEEEEEEEC--TTS---CEEEEEECSSCEEEEEECTTTCCEE-ECC-CSCSHHHHHCCSEE
T ss_pred EEEEEcCCCCCceEeecCCCccccceEC--CCC---CEEEEccCCCeeEEEEEcCCCCcEE-Ecc-CCCcChhhhhhccc
Confidence 79999987 5544434567788999999 999 8899888888 8999999888877 555 6666777777
Q ss_pred ----EecCCCEEEEEcCCCcEEEEEc
Q psy10778 520 ----YSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 520 ----~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
|+|||.++++++.||.+++|++
T Consensus 249 ~~~~~spdg~~~~~~~~~g~~~l~~~ 274 (582)
T 3o4h_A 249 TWLGYLPDGRLAVVARREGRSAVFID 274 (582)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred cceeEcCCCcEEEEEEcCCcEEEEEE
Confidence 9999999999999999999999
|
| >3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.8e-15 Score=153.56 Aligned_cols=225 Identities=13% Similarity=0.103 Sum_probs=154.0
Q ss_pred cCCCeEEEEeCC--CCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC---CCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 300 ECDNLIRLKMSK--ELPATPVIRPPLGATIATATTAPDCHTLWLGLT---SGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 300 s~Dg~I~lw~~~--~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~---Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.++.|.+|... +++........+...+..++|+|+|+ |++++. ++.|++|++..+. . +.+..+..+
T Consensus 13 ~~~~~i~v~~~d~~tg~~~~~~~~~~~~~p~~~a~spdg~-l~~~~~~~~~~~v~~~~~~~g~----~---~~~~~~~~~ 84 (347)
T 3hfq_A 13 KTSQGIYQGTLDTTAKTLTNDGLLAATQNPTYLALSAKDC-LYSVDKEDDEGGIAAWQIDGQT----A---HKLNTVVAP 84 (347)
T ss_dssp SSCCEEEEEEEETTTTEEEEEEEEEECSCCCCEEECTTCE-EEEEEEETTEEEEEEEEEETTE----E---EEEEEEEEE
T ss_pred CCCCCEEEEEEcCCCCeEEEeeeeeccCCcceEEEccCCe-EEEEEecCCCceEEEEEecCCc----E---EEeeeeecC
Confidence 346677777654 44443322224556778899999999 665554 6899999996541 0 223444557
Q ss_pred CccEEEEEEccCCCEEEEEc-CCCcEEEEeCCC---CeEEEEeCCCCCC--------CCeeEEEEeCCCCeEEEEeecCc
Q psy10778 375 SACVTDLYLCAGFSVAVSSS-EDGTCLLWDINT---IGYIREIPCVDPN--------TPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~---~~~v~~l~~~h~~--------~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
...+..++|+|++++|++++ .++.+.+|++.. .+.+..+.. ... ..+.+++|+|+++.+++..
T Consensus 85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~spdg~l~v~~~---- 159 (347)
T 3hfq_A 85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQH-SGHGPRPEQDGSHIHYTDLTPDNRLAVIDL---- 159 (347)
T ss_dssp SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEEC-CCCCSSTTCSSCCEEEEEECTTSCEEEEET----
T ss_pred CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeec-CCCCCCccccCCCceEEEECCCCcEEEEeC----
Confidence 77889999999999888777 789999999962 233444432 101 2488999999999444444
Q ss_pred CCCCeEEEEEeC--CcEEEE--ee--cCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCC--CeE--EEEecCCC
Q psy10778 443 TGGSILRLHTIN--AQLITS--LA--SELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYK--LAH--LLTLNTNV 511 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~--~~--~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~--~~~--~~~~~~~h 511 (556)
.++.|++|+++ |++... .. ....+..++|+ |+| +++ +++..++.|.+|++.. ++. +..+....
T Consensus 160 -~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~s--pdg---~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~ 233 (347)
T 3hfq_A 160 -GSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFS--PDG---QYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIP 233 (347)
T ss_dssp -TTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEEC--TTS---SEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSC
T ss_pred -CCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEEC--CCC---CEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecC
Confidence 67899999997 443322 22 23478889999 899 655 4566789999999863 443 33333111
Q ss_pred -----CCCeEEEEEecCCCEEE-EEcCCCcEEEEEcCC
Q psy10778 512 -----ALPVIAVTYSCDSQHLY-ASNTEGLVIIWESSS 543 (556)
Q Consensus 512 -----~~~V~~l~~s~dg~~l~-sgs~Dg~V~vwdl~~ 543 (556)
...+..++|+|||++|+ ++..++.|.+|++..
T Consensus 234 ~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~ 271 (347)
T 3hfq_A 234 ADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTA 271 (347)
T ss_dssp TTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred CCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECC
Confidence 14588999999999875 555689999999974
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=6.1e-16 Score=180.58 Aligned_cols=223 Identities=7% Similarity=-0.026 Sum_probs=174.3
Q ss_pred ceEEeccCCCeEEEEeCCC-CCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKE-LPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~-~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++..++.|+.++||.... +.....+. .|. .+.+.+|+|||+.|+++. ++.|++|+.... .+..+.
T Consensus 215 ~l~~~~~~dg~~~l~~~~~~g~~~~~l~-~~~-~~~~~~~SpDG~~la~~~-~~~i~~~d~~~~----------~l~~l~ 281 (1045)
T 1k32_A 215 RIYFITDIDGFGQIYSTDLDGKDLRKHT-SFT-DYYPRHLNTDGRRILFSK-GGSIYIFNPDTE----------KIEKIE 281 (1045)
T ss_dssp EEEEEECTTSSCEEEEEETTSCSCEECC-CCC-SSCEEEEEESSSCEEEEE-TTEEEEECTTTC----------CEEECC
T ss_pred EEEEEEeccCceEEEEEeCCCCcceEec-CCC-CcceeeEcCCCCEEEEEe-CCEEEEecCCce----------Eeeeec
Confidence 3666778889999997653 22233332 343 467789999999999885 899999997321 112222
Q ss_pred C-----------CCccEEEEEEc-cCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-CeeEEEEeCCCCeEEEEee
Q psy10778 373 G-----------HSACVTDLYLC-AGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT-PVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 373 ~-----------h~~~V~~l~~s-~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~-~V~~l~~sp~~~~i~s~s~ 439 (556)
+ |...+.+++|+ |+|+.+++++ ++.+.+|++..++.. .+.. + .. .+..++|+ +++.+++++
T Consensus 282 ~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~-~~~~-~-~~~~~~~~~~s-dg~~l~~~s- 355 (1045)
T 1k32_A 282 IGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVL-KVPE-P-LRIRYVRRGGD-TKVAFIHGT- 355 (1045)
T ss_dssp CCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEE-ECSC-C-SCEEEEEECSS-SEEEEEEEE-
T ss_pred cCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceE-EccC-C-CcceEEeeeEc-CCCeEEEEE-
Confidence 2 45678999999 9999888887 889999999877644 4555 5 56 89999999 999999988
Q ss_pred cCcCCCCeEE-EEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEE
Q psy10778 440 TTKTGGSILR-LHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIA 517 (556)
Q Consensus 440 ~~~~~d~~I~-iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~ 517 (556)
.++.+. +|++.+.....+ .+...+.+++|+ |+| +.|++++.++.|++||+.+++...... +|...+.+
T Consensus 356 ----~~~~l~~~~d~~~~~~~~l~~~~~~~~~~~~S--pDG---~~la~~~~~~~v~~~d~~tg~~~~~~~-~~~~~v~~ 425 (1045)
T 1k32_A 356 ----REGDFLGIYDYRTGKAEKFEENLGNVFAMGVD--RNG---KFAVVANDRFEIMTVDLETGKPTVIER-SREAMITD 425 (1045)
T ss_dssp ----TTEEEEEEEETTTCCEEECCCCCCSEEEEEEC--TTS---SEEEEEETTSEEEEEETTTCCEEEEEE-CSSSCCCC
T ss_pred ----CCCceEEEEECCCCCceEecCCccceeeeEEC--CCC---CEEEEECCCCeEEEEECCCCceEEecc-CCCCCccc
Confidence 677888 899874433333 455789999999 999 899999999999999999998877775 68888999
Q ss_pred EEEecCCCEEEEEcCCC----------cEEEEEcCCCC
Q psy10778 518 VTYSCDSQHLYASNTEG----------LVIIWESSSHN 545 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg----------~V~vwdl~~~~ 545 (556)
++|||||++|++++.++ .|++||+.+++
T Consensus 426 ~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 426 FTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRK 463 (1045)
T ss_dssp EEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTE
T ss_pred eEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCc
Confidence 99999999998887654 89999998754
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.67 E-value=2.8e-14 Score=145.66 Aligned_cols=225 Identities=14% Similarity=0.065 Sum_probs=157.1
Q ss_pred cCCCeEEEEeC--CCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 300 ECDNLIRLKMS--KELPATPVIRPPLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 300 s~Dg~I~lw~~--~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+.++.|.+|.+ ++++....... +...+..++|+|+|++|++++.+ +.|.+|++.... +.. +.+.....
T Consensus 24 ~~~~~i~~~~~d~~~g~~~~~~~~-~~~~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~--g~~---~~~~~~~~ 97 (361)
T 3scy_A 24 GNSKGIYTFRFNEETGESLPLSDA-EVANPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEK--GTL---HLLNTQKT 97 (361)
T ss_dssp SSCCEEEEEEEETTTCCEEEEEEE-ECSCCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTT--TEE---EEEEEEEC
T ss_pred CCCCCEEEEEEeCCCCCEEEeecc-cCCCCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCC--CcE---EEeeEecc
Confidence 45778888866 45555444433 66778889999999999999876 799999987531 111 22334445
Q ss_pred CCccEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeEEE------EeCC-------CCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 374 HSACVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGYIR------EIPC-------VDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~------~l~~-------~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
+......+++ +++.+++++ .++.+.+|++.....+. ...+ .+ ...+.+++|+|+++++++++.
T Consensus 98 ~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~spdg~~l~~~~~ 174 (361)
T 3scy_A 98 MGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALLPASDVIEFKGSGPDKERQT-MPHLHCVRITPDGKYLLADDL 174 (361)
T ss_dssp SSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBCSCSEEEECCCCCSCTTTCS-SCCEEEEEECTTSSEEEEEET
T ss_pred CCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCcccceeEEccCCCCCccccC-CCcceEEEECCCCCEEEEEeC
Confidence 5667778888 777666655 68999999997543221 1111 01 123578999999998777652
Q ss_pred cCcCCCCeEEEEEeC--C-----c-E-------EEEeecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeE
Q psy10778 440 TTKTGGSILRLHTIN--A-----Q-L-------ITSLASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAH 503 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~--g-----~-~-------i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~ 503 (556)
.++.|.+|+++ + + + .........+..++|+ |+| +++++++ .++.|.+|++.+++.
T Consensus 175 ----~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s--pdg---~~l~v~~~~~~~v~v~~~~~g~~ 245 (361)
T 3scy_A 175 ----GTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFN--SDG---KFAYLINEIGGTVIAFRYADGML 245 (361)
T ss_dssp ----TTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEEC--TTS---SEEEEEETTTCEEEEEEEETTEE
T ss_pred ----CCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEc--CCC---CEEEEEcCCCCeEEEEEecCCce
Confidence 57899999986 2 2 2 1222345678899999 999 7776666 689999999987654
Q ss_pred --EEEecC--CCCCCeEEEEEecCCCEEEEEcCC--CcEEEEEcC
Q psy10778 504 --LLTLNT--NVALPVIAVTYSCDSQHLYASNTE--GLVIIWESS 542 (556)
Q Consensus 504 --~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~D--g~V~vwdl~ 542 (556)
+..+.. .+...+.+++|+|||++|+++..+ +.|.+|++.
T Consensus 246 ~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~ 290 (361)
T 3scy_A 246 DEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVD 290 (361)
T ss_dssp EEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEEC
T ss_pred EEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEc
Confidence 333331 334567899999999998776654 899999996
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.7e-14 Score=145.78 Aligned_cols=225 Identities=8% Similarity=-0.001 Sum_probs=172.4
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe---------
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL--------- 371 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l--------- 371 (556)
.++.|.+||..+++........+......++++++|+++++...++.|++|+..... ..+..+
T Consensus 67 ~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~l~v~d~~~~~v~~~~~~g~~--------~~~~~~~~~~~~g~~ 138 (329)
T 3fvz_A 67 EEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGNYWVTDVALHQVFKLDPHSKE--------GPLLILGRSMQPGSD 138 (329)
T ss_dssp CSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSCEEEEETTTTEEEEECTTCSS--------CCSEEESBTTBCCCS
T ss_pred cCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCCEEEEECCCCEEEEEeCCCCe--------EEEEEecccCCCCCC
Confidence 568999999988877665554566688999999999988888889999999975420 123333
Q ss_pred eCCCccEEEEEEcc-CCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCCC---------CCCeeEEEEeCCCCeEEEEeec
Q psy10778 372 LGHSACVTDLYLCA-GFSVAVSSS-EDGTCLLWDINTIGYIREIPCVDP---------NTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 372 ~~h~~~V~~l~~s~-~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h~---------~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
.++.....+++++| ++.++++.+ .++.|++|| .+++.+..+.. .. -.....++++|+++.++++..
T Consensus 139 ~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~-~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~- 215 (329)
T 3fvz_A 139 QNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGE-ESSGSSPRPGQFSVPHSLALVPHLDQLCVADR- 215 (329)
T ss_dssp TTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECE-ECCSSSCCTTEESCEEEEEEETTTTEEEEEET-
T ss_pred ccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEecc-CCCCCCCCCcccCCCcEEEEECCCCEEEEEEC-
Confidence 34555789999999 788888886 699999999 55777777753 20 123889999999555544432
Q ss_pred CcCCCCeEEEEEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEE-------eCCCeEEEEeCCCCeEEEEecC
Q psy10778 441 TKTGGSILRLHTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTG-------HSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg-------~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
.++.|++||.+ |+.+..+. ....+.+++++ | + ..+++. ..+..|++|+..+++.+..+..
T Consensus 216 ---~~~~I~~~~~~~G~~~~~~~~~~~~~~~~~~~~~--p-g---~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~ 286 (329)
T 3fvz_A 216 ---ENGRIQCFKTDTKEFVREIKHASFGRNVFAISYI--P-G---FLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP 286 (329)
T ss_dssp ---TTTEEEEEETTTCCEEEEECCTTTTTCEEEEEEE--T-T---EEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC
T ss_pred ---CCCEEEEEECCCCcEEEEEeccccCCCcceeeec--C-C---EEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC
Confidence 78899999998 99988874 34678899999 6 4 344433 3345899999999999988842
Q ss_pred --CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 510 --NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 510 --~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
++...+.+++++++|.++++...+++|++|++....
T Consensus 287 ~~~~~~~p~~ia~~~dG~lyvad~~~~~I~~~~~~~~~ 324 (329)
T 3fvz_A 287 VRKHFDMPHDIVASEDGTVYIGDAHTNTVWKFTLTEKM 324 (329)
T ss_dssp SSSCCSSEEEEEECTTSEEEEEESSSCCEEEEEEEECS
T ss_pred CCCccCCeeEEEECCCCCEEEEECCCCEEEEEeCCccc
Confidence 456779999999999888888899999999987643
|
| >1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24 | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=175.96 Aligned_cols=201 Identities=11% Similarity=0.107 Sum_probs=153.0
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc---cEEEEEEccCCCEEEEEcCC------
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA---CVTDLYLCAGFSVAVSSSED------ 396 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~sgs~D------ 396 (556)
.+.+++|+|||+++++ +.||+|++||..++ +....+.+|.. .|.+++|||||+.|++++.+
T Consensus 18 ~~~~~~~spdg~~~~~-~~dg~i~~~d~~~g---------~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~ 87 (723)
T 1xfd_A 18 HDPEAKWISDTEFIYR-EQKGTVRLWNVETN---------TSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQH 87 (723)
T ss_dssp CCCCCCBSSSSCBCCC-CSSSCEEEBCGGGC---------CCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSS
T ss_pred cccccEEcCCCcEEEE-eCCCCEEEEECCCC---------cEEEEeccccccccccceEEECCCCCEEEEEecCccceee
Confidence 3567899999997776 78999999999876 44455666654 49999999999999998764
Q ss_pred ---CcEEEEeCCCCeEEEEeCC--CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-CC----
Q psy10778 397 ---GTCLLWDINTIGYIREIPC--VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS-EL---- 465 (556)
Q Consensus 397 ---g~I~iwdl~~~~~v~~l~~--~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~-~~---- 465 (556)
+.+.+||+.+++. +.+.. .+ ...+..++|||||+.|+.++ ++.|++||+. ++....... ..
T Consensus 88 ~~~~~i~~~d~~~~~~-~~l~~~~~~-~~~~~~~~~SPdG~~la~~~------~~~i~~~~~~~g~~~~~~~~~~~~~~~ 159 (723)
T 1xfd_A 88 SYTGYYVLSKIPHGDP-QSLDPPEVS-NAKLQYAGWGPKGQQLIFIF------ENNIYYCAHVGKQAIRVVSTGKEGVIY 159 (723)
T ss_dssp CCCSEEEEEESSSCCC-EECCCTTCC-SCCCSBCCBCSSTTCEEEEE------TTEEEEESSSSSCCEEEECCCBTTTEE
T ss_pred cceeeEEEEECCCCce-EeccCCccc-cccccccEECCCCCEEEEEE------CCeEEEEECCCCceEEEecCCCCCceE
Confidence 7888999998875 44443 02 33488999999999999997 4799999997 444433322 22
Q ss_pred --------------CeEEEEEeeCCCCCcceEEEEEeCCC----------------------------------eEEEEe
Q psy10778 466 --------------RITSVTFSNAPEGVSQNVIVTGHSDG----------------------------------TIQLWS 497 (556)
Q Consensus 466 --------------~i~~i~~s~~pdg~~~~~l~tg~~dg----------------------------------~I~iwd 497 (556)
.+.+++|| ||| +.|++++.++ .|++||
T Consensus 160 ~g~~~~v~~ee~~~~~~~~~~S--pDg---~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~d 234 (723)
T 1xfd_A 160 NGLSDWLYEEEILKTHIAHWWS--PDG---TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIG 234 (723)
T ss_dssp EEECCHHHHHTTSSSSEEEEEC--TTS---SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEE
T ss_pred CcccceeEEEEeccCcceEEEC--CCC---CEEEEEEECCCccceEEeeccCCcCCCcceeccCCCCCCCCCeeEEEEEE
Confidence 23789999 999 7888877543 799999
Q ss_pred CCCCeEEEEecCC-----CCCCeEEEEEecCCCEEEEEcC----CCcEEEEEcCCCCCcCe
Q psy10778 498 GYKLAHLLTLNTN-----VALPVIAVTYSCDSQHLYASNT----EGLVIIWESSSHNRTPK 549 (556)
Q Consensus 498 ~~~~~~~~~~~~~-----h~~~V~~l~~s~dg~~l~sgs~----Dg~V~vwdl~~~~~~~~ 549 (556)
+.+++....+... +...+.+++|||||++|++.+. ++.|++||+.+++....
T Consensus 235 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~ 295 (723)
T 1xfd_A 235 LNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK 295 (723)
T ss_dssp SSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred CCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence 9888765666521 2567899999999998877643 35799999988765443
|
| >1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.3e-15 Score=177.85 Aligned_cols=220 Identities=11% Similarity=-0.022 Sum_probs=175.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC----------CCCCceEEEEEc-CCCCEEEEEeCCCcEEEEEeeeccCccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP----------PLGATIATATTA-PDCHTLWLGLTSGNILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~----------~h~~~V~~i~~s-~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~ 363 (556)
.++++ .++.|++|+....+.. .+.. .|...+.+++|+ |||+.|++++ ++.|.+|+...+
T Consensus 258 ~la~~-~~~~i~~~d~~~~~l~-~l~~~~~~~~~~~~~~~~~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~------- 327 (1045)
T 1k32_A 258 RILFS-KGGSIYIFNPDTEKIE-KIEIGDLESPEDRIISIPSKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGT------- 327 (1045)
T ss_dssp CEEEE-ETTEEEEECTTTCCEE-ECCCCCCCBCCSEEEECGGGGEEEEEECGGGCEEEEE-TTEEEEECTTSS-------
T ss_pred EEEEE-eCCEEEEecCCceEee-eeccCcccccccccccccccceeeecCCCCCEEEEEE-cCEEEEEcCCCC-------
Confidence 56665 5899999998544332 2221 033478999999 9999999988 789999987654
Q ss_pred ccCCCeEeeCCCc-cEEEEEEccCCCEEEEEcCCCcEE-EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 364 FCKPPTILLGHSA-CVTDLYLCAGFSVAVSSSEDGTCL-LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 364 ~~~~~~~l~~h~~-~V~~l~~s~~~~~l~sgs~Dg~I~-iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
....+..|.. .+.+++|+ +|+.+++++.++.+. +||+..++.. .+.. | ...+..++|+|+|+.|++++
T Consensus 328 ---~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~-~l~~-~-~~~~~~~~~SpDG~~la~~~--- 397 (1045)
T 1k32_A 328 ---YVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAE-KFEE-N-LGNVFAMGVDRNGKFAVVAN--- 397 (1045)
T ss_dssp ---BEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEE-ECCC-C-CCSEEEEEECTTSSEEEEEE---
T ss_pred ---ceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCce-EecC-C-ccceeeeEECCCCCEEEEEC---
Confidence 1234566777 89999999 999999998888888 9999876644 4446 7 78999999999999999998
Q ss_pred cCCCCeEEEEEeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCC----------eEEEEeCCCCeEEEEecC
Q psy10778 442 KTGGSILRLHTIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDG----------TIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg----------~I~iwd~~~~~~~~~~~~ 509 (556)
.++.|++||+. ++..... .+...+.+++|+ |+| ++|++++.++ .|++||+.+++ +..+.
T Consensus 398 --~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~S--pDG---~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~-~~~l~- 468 (1045)
T 1k32_A 398 --DRFEIMTVDLETGKPTVIERSREAMITDFTIS--DNS---RFIAYGFPLKHGETDGYVMQAIHVYDMEGRK-IFAAT- 468 (1045)
T ss_dssp --TTSEEEEEETTTCCEEEEEECSSSCCCCEEEC--TTS---CEEEEEEEECSSTTCSCCEEEEEEEETTTTE-EEECS-
T ss_pred --CCCeEEEEECCCCceEEeccCCCCCccceEEC--CCC---CeEEEEecCccccccCCCCCeEEEEECCCCc-EEEee-
Confidence 88999999997 6666555 567788999999 999 8888877644 89999998887 56665
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.|...+.+++|+|||+.|+.++.++...+|+...
T Consensus 469 ~~~~~~~~~~~spdG~~l~~~s~~~~~~~~~~~~ 502 (1045)
T 1k32_A 469 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 502 (1045)
T ss_dssp CSSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred CCCcccCCceEcCCCCEEEEEecccCCcCcchhc
Confidence 6778899999999999999999988888887543
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=4.6e-15 Score=152.20 Aligned_cols=233 Identities=10% Similarity=-0.001 Sum_probs=158.4
Q ss_pred eEEeccCCCeEEEEeCC-CCCCcceEcCCCCCceEEEEEcCCCCE--EEEEe-------------CCCcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSK-ELPATPVIRPPLGATIATATTAPDCHT--LWLGL-------------TSGNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~-~~~~~~~~~~~h~~~V~~i~~s~dg~~--l~tgs-------------~Dg~I~vwd~~~~~~ 358 (556)
++.+++.+ .|.+|++. +++..........+.+.+++++|+|++ ++++. .+|++.+|++....
T Consensus 53 ~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g- 130 (365)
T 1jof_A 53 NIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETG- 130 (365)
T ss_dssp EEEEEEBT-EEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTC-
T ss_pred EEEEEccc-eEEEEEECCCCCEEEeeEeecCCCCccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCC-
Confidence 45555556 99999987 665443322111123566899999994 45553 68999999997421
Q ss_pred cccccccCCCeEee-CCCccEEEEEEccCCCEEEEEc-CCCcEEEEeCC-CCeEE--EEeCCC-CCCCCeeEEEEeCCCC
Q psy10778 359 TNKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSS-EDGTCLLWDIN-TIGYI--REIPCV-DPNTPVSHVTMSETNG 432 (556)
Q Consensus 359 ~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~-~~~~v--~~l~~~-h~~~~V~~l~~sp~~~ 432 (556)
... ..+..+. .+...+.+++|+|+|+++++++ .++.|.+||+. +++.. ..+..+ + ...+..++|+|+|+
T Consensus 131 --~~~--~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~-g~~p~~~~~spdg~ 205 (365)
T 1jof_A 131 --KLE--KNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHPTGN 205 (365)
T ss_dssp --CEE--EEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECTTSS
T ss_pred --cCc--ceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCC-CCCCCEeEECCCCC
Confidence 110 0011111 3567799999999999877765 46899999998 67643 334310 3 46689999999999
Q ss_pred eEEEEeecCcCCCCeEEEEEeC---CcEE---EEee---cC----C-------CeEEEE-EeeCCCCCcceEEEEEeCC-
Q psy10778 433 EIASVLQTTKTGGSILRLHTIN---AQLI---TSLA---SE----L-------RITSVT-FSNAPEGVSQNVIVTGHSD- 490 (556)
Q Consensus 433 ~i~s~s~~~~~~d~~I~iwdi~---g~~i---~~~~---~~----~-------~i~~i~-~s~~pdg~~~~~l~tg~~d- 490 (556)
++++++. .++.|.+|+++ |++. ..+. .. . .+..++ |+ |+| ++|++++.+
T Consensus 206 ~l~v~~~----~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~s--pdG---~~l~v~~~~~ 276 (365)
T 1jof_A 206 YLYALME----AGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT--FSG---KYMFASSRAN 276 (365)
T ss_dssp EEEEEET----TTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC--TTS---SEEEEEEEES
T ss_pred EEEEEEC----CCCeEEEEEEeCCCCcEEEccceEEcCCCCcCCcccccccccccccEEEEC--CCC---CEEEEECCCC
Confidence 9988762 46899999875 5543 2222 11 1 488999 99 999 777766543
Q ss_pred C-----eEEEEeCC-CCeEEE---EecCCCCCCeEEEEEec---CCCEEEEEcCC-CcEEEEEcCCC
Q psy10778 491 G-----TIQLWSGY-KLAHLL---TLNTNVALPVIAVTYSC---DSQHLYASNTE-GLVIIWESSSH 544 (556)
Q Consensus 491 g-----~I~iwd~~-~~~~~~---~~~~~h~~~V~~l~~s~---dg~~l~sgs~D-g~V~vwdl~~~ 544 (556)
+ .|.+|++. +++... .+. .+...+..++|+| ||++|++++.+ +.|.+|++...
T Consensus 277 ~~~~~~~i~v~~~~~~g~~~~~~~~~~-~~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~ 342 (365)
T 1jof_A 277 KFELQGYIAGFKLRDCGSIEKQLFLSP-TPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp STTSCCEEEEEEECTTSCEEEEEEEEE-CSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred CCCCCCeEEEEEECCCCCEEEeeeeee-cCCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence 2 89999985 566543 232 3445567889999 89999998875 89999999765
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.66 E-value=6.4e-14 Score=138.02 Aligned_cols=225 Identities=8% Similarity=0.056 Sum_probs=165.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-----CCCCceEEEEE-cCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-----PLGATIATATT-APDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-----~h~~~V~~i~~-s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.+..++.|++|+.. ++....+.. ++...+.++++ .++++++++... ++.|.+|+.. + +.
T Consensus 43 l~v~~~~~~~i~~~d~~-g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d~~-g---------~~ 111 (286)
T 1q7f_A 43 IIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQY-G---------QF 111 (286)
T ss_dssp EEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTT-S---------CE
T ss_pred EEEEECCCCEEEEECCC-CcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCCCCCEEEEECCC-C---------cE
Confidence 55566678889999876 433333321 24457889999 467766666543 7899999833 2 12
Q ss_pred CeEee-CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 368 PTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 368 ~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
+..+. .+...+.+++++++++++++...++.|.+||.. ++.+..+.. .+ ...+..+++++++..+++.. .+
T Consensus 112 ~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~-~~~p~~i~~~~~g~l~v~~~-----~~ 184 (286)
T 1q7f_A 112 VRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH-LEFPNGVVVNDKQEIFISDN-----RA 184 (286)
T ss_dssp EEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT-CSSEEEEEECSSSEEEEEEG-----GG
T ss_pred EEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCc-cCCcEEEEECCCCCEEEEEC-----CC
Confidence 23332 344678999999999988888889999999965 666666642 03 45689999999988666665 67
Q ss_pred CeEEEEEeCCcEEEEeecC---CCeEEEEEeeCCCCCcceEEEEEeCCC-eEEEEeCCCCeEEEEecCC-CCCCeEEEEE
Q psy10778 446 SILRLHTINAQLITSLASE---LRITSVTFSNAPEGVSQNVIVTGHSDG-TIQLWSGYKLAHLLTLNTN-VALPVIAVTY 520 (556)
Q Consensus 446 ~~I~iwdi~g~~i~~~~~~---~~i~~i~~s~~pdg~~~~~l~tg~~dg-~I~iwd~~~~~~~~~~~~~-h~~~V~~l~~ 520 (556)
+.|++||.+++.+..+... ..+.+++++ ++| +++++...++ .|.+||. +++.+..+... ....+.++++
T Consensus 185 ~~i~~~~~~g~~~~~~~~~g~~~~p~~i~~d--~~G---~l~v~~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~~i~~ 258 (286)
T 1q7f_A 185 HCVKVFNYEGQYLRQIGGEGITNYPIGVGIN--SNG---EILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVAL 258 (286)
T ss_dssp TEEEEEETTCCEEEEESCTTTSCSEEEEEEC--TTC---CEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEE
T ss_pred CEEEEEcCCCCEEEEEccCCccCCCcEEEEC--CCC---CEEEEeCCCCEEEEEECC-CCCEEEEEcccCCCCcceeEEE
Confidence 8999999998888777543 578999999 888 7888888776 9999995 67777777531 2234789999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+++|+++++ +.|++|++|++...
T Consensus 259 ~~~g~l~vs-~~~~~v~v~~~~~~ 281 (286)
T 1q7f_A 259 MDDGSVVLA-SKDYRLYIYRYVQL 281 (286)
T ss_dssp ETTTEEEEE-ETTTEEEEEECSCC
T ss_pred CCCCcEEEE-CCCCeEEEEEcccc
Confidence 999987776 57999999998654
|
| >3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A | Back alignment and structure |
|---|
Probab=99.65 E-value=9.6e-14 Score=141.61 Aligned_cols=227 Identities=9% Similarity=0.084 Sum_probs=153.1
Q ss_pred eEEeccC----CCeEEEEeCCC--CCCcceEcC-CCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNEC----DNLIRLKMSKE--LPATPVIRP-PLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~----Dg~I~lw~~~~--~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
+|.+++. ++.|.+|++.. ++....... .+......+++ ++++|++++ .++.|.+|++....... .
T Consensus 63 ~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~~~g~~~-----~ 135 (361)
T 3scy_A 63 FVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIGQDGALL-----P 135 (361)
T ss_dssp EEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBCTTSCBC-----S
T ss_pred EEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeCCCCcCc-----c
Confidence 4444444 38999998765 333222221 24456777887 788777776 67899999997542111 1
Q ss_pred CCeEe----------eCCCccEEEEEEccCCCEEE-EEcCCCcEEEEeCCCCe-------E-------EEEeCCCCCCCC
Q psy10778 367 PPTIL----------LGHSACVTDLYLCAGFSVAV-SSSEDGTCLLWDINTIG-------Y-------IREIPCVDPNTP 421 (556)
Q Consensus 367 ~~~~l----------~~h~~~V~~l~~s~~~~~l~-sgs~Dg~I~iwdl~~~~-------~-------v~~l~~~h~~~~ 421 (556)
..... ..+...+.+++|+|+|+.++ ++..++.|.+|++.... . ..... + ...
T Consensus 136 ~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~~~ 212 (361)
T 3scy_A 136 ASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA--P-GSG 212 (361)
T ss_dssp CSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC--T-TCC
T ss_pred cceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC--C-CCC
Confidence 11111 11233468899999999554 45568999999887533 1 12222 3 567
Q ss_pred eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcE--EEEee----cCCCeEEEEEeeCCCCCcceEEEEEeC--CCe
Q psy10778 422 VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQL--ITSLA----SELRITSVTFSNAPEGVSQNVIVTGHS--DGT 492 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~--i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~--dg~ 492 (556)
+..++|+|+++++++++. .++.|.+|+++ +++ +.... +.....+++|+ |+| ++|+++.. ++.
T Consensus 213 ~~~~~~spdg~~l~v~~~----~~~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~s--pdg---~~l~v~~~~~~~~ 283 (361)
T 3scy_A 213 PRHLIFNSDGKFAYLINE----IGGTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLS--PDG---KYLYASNRLKADG 283 (361)
T ss_dssp EEEEEECTTSSEEEEEET----TTCEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEEC--TTS---SEEEEEECSSSCE
T ss_pred CeEEEEcCCCCEEEEEcC----CCCeEEEEEecCCceEEeEEEecCCCCCCCcccEEEC--CCC---CEEEEECCCCCCE
Confidence 899999999998877763 57899999997 433 22222 12456899999 999 77766655 489
Q ss_pred EEEEeCC--CCe--EEEEecCCCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcC
Q psy10778 493 IQLWSGY--KLA--HLLTLNTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESS 542 (556)
Q Consensus 493 I~iwd~~--~~~--~~~~~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~ 542 (556)
|.+|++. +++ .+..+. . ...+.+++|+|||++|++++ .++.|.+|++.
T Consensus 284 i~v~~~~~~~g~~~~~~~~~-~-g~~~~~~~~spdg~~l~~~~~~~~~v~v~~~d 336 (361)
T 3scy_A 284 VAIFKVDETNGTLTKVGYQL-T-GIHPRNFIITPNGKYLLVACRDTNVIQIFERD 336 (361)
T ss_dssp EEEEEECTTTCCEEEEEEEE-C-SSCCCEEEECTTSCEEEEEETTTTEEEEEEEC
T ss_pred EEEEEEcCCCCcEEEeeEec-C-CCCCceEEECCCCCEEEEEECCCCCEEEEEEE
Confidence 9999985 344 455555 3 46788999999999888877 67899997665
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.64 E-value=5.5e-16 Score=173.49 Aligned_cols=232 Identities=10% Similarity=-0.001 Sum_probs=158.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC---ceEEEEEcCCCCEEEEEeC---------CCcEEEEEeeeccCcccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA---TIATATTAPDCHTLWLGLT---------SGNILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~---~V~~i~~s~dg~~l~tgs~---------Dg~I~vwd~~~~~~~~~~ 362 (556)
+++. +.|+.|++|+..+++....+. .|.. .+.+++|+|||++|++++. +++|++||+.++..
T Consensus 29 ~~~~-~~d~~i~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~---- 102 (719)
T 1z68_A 29 YLHQ-SADNNIVLYNIETGQSYTILS-NRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEF---- 102 (719)
T ss_dssp EEEE-CTTSCEEEEESSSCCEEEEEC-HHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEE----
T ss_pred EEEE-cCCCCEEEEEcCCCcEEEEEc-cccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCcc----
Confidence 4444 469999999999887665553 2322 3889999999999999876 78999999876511
Q ss_pred cccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCe-----------------eEE
Q psy10778 363 EFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV-----------------SHV 425 (556)
Q Consensus 363 ~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V-----------------~~l 425 (556)
. ....+ ...+..++|||||+.|++++ ++.|++||+.+++..+.....+ ...+ .++
T Consensus 103 ~---~~~~l---~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~-~~~v~~g~~~~v~~ee~~~~~~~~ 174 (719)
T 1z68_A 103 V---RGNEL---PRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGR-ENKIFNGIPDWVYEEEMLATKYAL 174 (719)
T ss_dssp C---CSSCC---CSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCB-TTTEEESSCCHHHHHHTTCSSCCE
T ss_pred c---cceec---CcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCC-cCCeEcccccceeeeecccCcccE
Confidence 0 00111 24688899999999999886 7899999999887654332202 2212 489
Q ss_pred EEeCCCCeEEEEeecCcC-----------------------------CCCeEEEEEeCCcEE---EEe-------ecCCC
Q psy10778 426 TMSETNGEIASVLQTTKT-----------------------------GGSILRLHTINAQLI---TSL-------ASELR 466 (556)
Q Consensus 426 ~~sp~~~~i~s~s~~~~~-----------------------------~d~~I~iwdi~g~~i---~~~-------~~~~~ 466 (556)
+|||||+.|++++.+... ....|++||+.+... ..+ .+...
T Consensus 175 ~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~ 254 (719)
T 1z68_A 175 WWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYY 254 (719)
T ss_dssp EECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEE
T ss_pred EECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCCccceeEccCCccCCCCcce
Confidence 999999999998743100 112788999974321 111 24567
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCC----CeEEEEe----CCCCeEEEEec---CCCCCCeE-----EEEEecCCCEEEE-
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSD----GTIQLWS----GYKLAHLLTLN---TNVALPVI-----AVTYSCDSQHLYA- 529 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~d----g~I~iwd----~~~~~~~~~~~---~~h~~~V~-----~l~~s~dg~~l~s- 529 (556)
+.+++|+ ||+ +++++.... ..|.+|| ..+++....+. .+|...+. .++|+|||+.++.
T Consensus 255 ~~~~~~S--pD~---~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~ 329 (719)
T 1z68_A 255 FSWLTWV--TDE---RVCLQWLKRVQNVSVLSICDFREDWQTWDCPKTQEHIEESRTGWAGGFFVSTPVFSYDAISYYKI 329 (719)
T ss_dssp EEEEEES--SSS---EEEEEEEESSTTEEEEEEEEECSSSSSEECCGGGEEEEECSSSCSSSSSCCCCEECTTSSCEEEE
T ss_pred EEEeEEe--CCC---eEEEEEeccccCeEEEEEEcccCCCCCCceEEEEecccccCCceEccccCCccEECCCCCeEEEE
Confidence 8999999 888 777775432 3488899 77776554441 24566666 7899999985543
Q ss_pred -EcCCC--cEEEEEcCCCC
Q psy10778 530 -SNTEG--LVIIWESSSHN 545 (556)
Q Consensus 530 -gs~Dg--~V~vwdl~~~~ 545 (556)
+..+| .|.+|++.+++
T Consensus 330 ~~~~~g~~~l~~~~~~~~~ 348 (719)
T 1z68_A 330 FSDKDGYKHIHYIKDTVEN 348 (719)
T ss_dssp EECTTSCEEEEEESSCSTT
T ss_pred EEccCCceEEEEEECCCCc
Confidence 55566 46666766544
|
| >3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-15 Score=162.61 Aligned_cols=196 Identities=11% Similarity=-0.011 Sum_probs=145.6
Q ss_pred CCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEeeCCC-ccEEEEEEccCCCEEEEEcC---CCc
Q psy10778 324 GATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTILLGHS-ACVTDLYLCAGFSVAVSSSE---DGT 398 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~---Dg~ 398 (556)
..+|.+++++|||+.||+++. ||+++||++..+ ....+..|. ..+..++|+|+ +++++++. +..
T Consensus 21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g----------~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~ 89 (582)
T 3o4h_A 21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGG----------ETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQ 89 (582)
T ss_dssp HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETT----------EEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCC
T ss_pred ccchheeecCCCCCeEEEEEccCCceeEEEEcCC----------CcEeeecccccccccccCCCC-eEEEEeccCCCCcc
Confidence 457999999999999999887 999999998543 123445555 68999999999 77777765 455
Q ss_pred EEEEeCCC---CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEee
Q psy10778 399 CLLWDINT---IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSN 474 (556)
Q Consensus 399 I~iwdl~~---~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~ 474 (556)
..+|.+.. +... .+.. ...+...+|+|+++.++..+. .++.+.+||+. ++......+.. .+++|+
T Consensus 90 ~~l~~~~~~~~g~~~-~l~~---~~~~~~~~~s~dg~~~~~~s~----~~~~~~l~d~~~g~~~~l~~~~~--~~~~~s- 158 (582)
T 3o4h_A 90 HALFKVNTSRPGEEQ-RLEA---VKPMRILSGVDTGEAVVFTGA----TEDRVALYALDGGGLRELARLPG--FGFVSD- 158 (582)
T ss_dssp EEEEEEETTSTTCCE-ECTT---SCSBEEEEEEECSSCEEEEEE----CSSCEEEEEEETTEEEEEEEESS--CEEEEE-
T ss_pred eEEEEEeccCCCccc-cccC---CCCceeeeeCCCCCeEEEEec----CCCCceEEEccCCcEEEeecCCC--ceEEEC-
Confidence 56655432 3322 5544 344667899999876544432 45556699998 44433333433 889999
Q ss_pred CCCCCcceEEEEEeCC----CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC--cEEEEEcCCCCCc
Q psy10778 475 APEGVSQNVIVTGHSD----GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG--LVIIWESSSHNRT 547 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~d----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg--~V~vwdl~~~~~~ 547 (556)
||| +.|++++.+ +.|++||+.+++.. .+. .|...+.+++|||||+.|++++.+| .|++||+.+++..
T Consensus 159 -pDG---~~la~~~~~~~~~~~i~~~d~~~g~~~-~l~-~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 159 -IRG---DLIAGLGFFGGGRVSLFTSNLSSGGLR-VFD-SGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE 231 (582)
T ss_dssp -EET---TEEEEEEEEETTEEEEEEEETTTCCCE-EEC-CSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE
T ss_pred -CCC---CEEEEEEEcCCCCeEEEEEcCCCCCce-Eee-cCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE
Confidence 899 889987766 78999999887765 454 5778899999999999999888888 8999999886654
|
| >1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.5e-14 Score=140.31 Aligned_cols=189 Identities=12% Similarity=0.033 Sum_probs=148.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCC----CceEEEEEcCCCCEEEEEe------------CCCcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLG----ATIATATTAPDCHTLWLGL------------TSGNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~----~~V~~i~~s~dg~~l~tgs------------~Dg~I~vwd~~~~~~ 358 (556)
+++.+..++.|.+||..+++....+...+. ..+.+++|+|+|+++++++ .++.|.+||+.++
T Consensus 48 l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~-- 125 (337)
T 1pby_B 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-- 125 (337)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--
T ss_pred EEEEeCCCCeEEEEECCCCCeEeeEEcCCcccccccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCC--
Confidence 667777889999999998887766654331 2577899999999999886 5799999998754
Q ss_pred cccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-------------------
Q psy10778 359 TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN------------------- 419 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~------------------- 419 (556)
+....+.. ...+.+++|+|+++.++++ ++.|.+||+.+++.+..+.. + .
T Consensus 126 -------~~~~~~~~-~~~~~~~~~s~dg~~l~~~--~~~i~~~d~~~~~~~~~~~~-~-~~~~~~~~s~dg~~l~~~~~ 193 (337)
T 1pby_B 126 -------SRRKAFEA-PRQITMLAWARDGSKLYGL--GRDLHVMDPEAGTLVEDKPI-Q-SWEAETYAQPDVLAVWNQHE 193 (337)
T ss_dssp -------EEEEEEEC-CSSCCCEEECTTSSCEEEE--SSSEEEEETTTTEEEEEECS-T-TTTTTTBCCCBCCCCCCCCT
T ss_pred -------cEEEEEeC-CCCcceeEECCCCCEEEEe--CCeEEEEECCCCcEeeeeec-c-ccCCCceeCCCccEEeeecc
Confidence 22233433 4457889999999988877 68899999998877766543 2 1
Q ss_pred -----------------------------------------------CCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 420 -----------------------------------------------TPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 420 -----------------------------------------------~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
..+..++|+|+++.++++ ++.|++||
T Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~-------~~~v~~~d 266 (337)
T 1pby_B 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKTRAFGA-------YNVLESFD 266 (337)
T ss_dssp TTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECTTSSEEEEE-------ESEEEEEE
T ss_pred CCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCCCCceeeEEECCCCCEEEEe-------CCeEEEEE
Confidence 123458999999888876 37999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
++ ++.+..+.....+.+++|+ |+| ++|++++.++.|++||+.+++.+..+..
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~i~v~d~~~~~~~~~~~~ 319 (337)
T 1pby_B 267 LEKNASIKRVPLPHSYYSVNVS--TDG---STVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTTTEEEEEEECSSCCCEEEEC--TTS---CEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCCcCcceecCCCceeeEEEC--CCC---CEEEEEcCCCcEEEEECcCCcEEEEEEc
Confidence 97 7777777777788999999 899 7888888899999999999999888873
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.62 E-value=9.1e-14 Score=137.07 Aligned_cols=212 Identities=10% Similarity=-0.018 Sum_probs=168.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++.++.|+.|.+||.++++.+..+.......+.+++++|+|++++ +.++.|..||. ++ +.+..+..+
T Consensus 7 ~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G---------~~~W~~~~~ 74 (276)
T 3no2_A 7 LLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DG---------RELWNIAAP 74 (276)
T ss_dssp EEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TS---------CEEEEEECC
T ss_pred EEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CC---------CEEEEEcCC
Confidence 8899999999999999999888777643224688999999999888 34678888887 44 334555544
Q ss_pred -CccEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEEeCCC-----CCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 375 -SACVTDLYLCAGFSVAVSSSE-DGTCLLWDINTIGYIREIPCV-----DPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 375 -~~~V~~l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l~~~-----h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
...+.++.+.++|+++++.+. ++.+..+|. +|+.+.++... + ......++..++|+++++.. .++.
T Consensus 75 ~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~-~~~~~~v~~~~~G~~lv~~~-----~~~~ 147 (276)
T 3no2_A 75 AGCEMQTARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERP-HAQFRQINKNKKGNYLVPLF-----ATSE 147 (276)
T ss_dssp TTCEEEEEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSG-GGSCSCCEECTTSCEEEEET-----TTTE
T ss_pred CCccccccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcc-cccccCceECCCCCEEEEec-----CCCE
Confidence 357889999999999999887 788888886 68877766420 1 12455678899999999887 7899
Q ss_pred EEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-----CCCCeEEEEEec
Q psy10778 448 LRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-----VALPVIAVTYSC 522 (556)
Q Consensus 448 I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-----h~~~V~~l~~s~ 522 (556)
|..||.+|+.+..+.......++... ++| ++++++..++.|..+|..+++.+.++... ....+.+++..+
T Consensus 148 v~~~d~~G~~~w~~~~~~~~~~~~~~--~~g---~~~v~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~l~~~~~~~~~~ 222 (276)
T 3no2_A 148 VREIAPNGQLLNSVKLSGTPFSSAFL--DNG---DCLVACGDAHCFVQLNLESNRIVRRVNANDIEGVQLFFVAQLFPLQ 222 (276)
T ss_dssp EEEECTTSCEEEEEECSSCCCEEEEC--TTS---CEEEECBTTSEEEEECTTTCCEEEEEEGGGSBSCCCSEEEEEEECT
T ss_pred EEEECCCCCEEEEEECCCCccceeEc--CCC---CEEEEeCCCCeEEEEeCcCCcEEEEecCCCCCCccccccccceEcC
Confidence 99999999999999876677777777 888 89999998899999999999999998621 112378889999
Q ss_pred CCCEEEEE
Q psy10778 523 DSQHLYAS 530 (556)
Q Consensus 523 dg~~l~sg 530 (556)
+|..+++.
T Consensus 223 ~G~i~v~~ 230 (276)
T 3no2_A 223 NGGLYICN 230 (276)
T ss_dssp TSCEEEEE
T ss_pred CCCEEEEe
Confidence 99988877
|
| >1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B* | Back alignment and structure |
|---|
Probab=99.60 E-value=1.9e-13 Score=137.74 Aligned_cols=191 Identities=14% Similarity=0.077 Sum_probs=145.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCC-----CCceEEEEEcCCCCEEEEEeCC------------CcEEEEEeeecc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPL-----GATIATATTAPDCHTLWLGLTS------------GNILVYEYELNA 357 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h-----~~~V~~i~~s~dg~~l~tgs~D------------g~I~vwd~~~~~ 357 (556)
+++.+..++.|.+|+..+++....+...+ ...+.+++|+|+|+++++++.+ +.|.+||+.++.
T Consensus 57 ~~v~~~~~~~i~~~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~ 136 (349)
T 1jmx_B 57 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 136 (349)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEeCCCCcEEEEeCCCCcEEEEEEcccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCcc
Confidence 55667789999999999887666665433 2337889999999999999866 899999987641
Q ss_pred CcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC------------------
Q psy10778 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN------------------ 419 (556)
Q Consensus 358 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~------------------ 419 (556)
.. +.+..... ...+.+++|+|+++ +++++. .|.+||+.+++.+..+.. + .
T Consensus 137 ----~~--~~~~~~~~-~~~~~~~~~s~dg~-l~~~~~--~i~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 204 (349)
T 1jmx_B 137 ----EA--KPVRTFPM-PRQVYLMRAADDGS-LYVAGP--DIYKMDVKTGKYTVALPL-R-NWNRKGYSAPDVLYFWPHQ 204 (349)
T ss_dssp ----GB--CCSEEEEC-CSSCCCEEECTTSC-EEEESS--SEEEECTTTCCEEEEECS-T-TCCCTTBCCCBCCCCCCCC
T ss_pred ----cc--ceeeeccC-CCcccceeECCCCc-EEEccC--cEEEEeCCCCceeccccc-c-ccCCccccCccceeeecCC
Confidence 11 23344443 34688999999999 555544 499999999888777654 2 1
Q ss_pred --------------------------------------------------CCeeEEEEeC-CCCeEEEEeecCcCCCCeE
Q psy10778 420 --------------------------------------------------TPVSHVTMSE-TNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 420 --------------------------------------------------~~V~~l~~sp-~~~~i~s~s~~~~~~d~~I 448 (556)
..+..++++| +++.++++ ++.|
T Consensus 205 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~dg~~l~~~-------~~~v 277 (349)
T 1jmx_B 205 SPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGV-------LNRL 277 (349)
T ss_dssp CTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEECSSCEEEEEECSSCTTEEEEE-------ESEE
T ss_pred CcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecccccCCCcceeeEecCCCCCEEEEE-------cCeE
Confidence 1244567778 88888776 3689
Q ss_pred EEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 449 RLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
.+||+. ++.+..+.....+.+++|+ ++| +.|++++.++.|++||+.+++.+..+..
T Consensus 278 ~~~d~~~~~~~~~~~~~~~~~~~~~s--~dg---~~l~~~~~~~~v~v~d~~~~~~~~~~~~ 334 (349)
T 1jmx_B 278 AKYDLKQRKLIKAANLDHTYYCVAFD--KKG---DKLYLGGTFNDLAVFNPDTLEKVKNIKL 334 (349)
T ss_dssp EEEETTTTEEEEEEECSSCCCEEEEC--SSS---SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred EEEECccCeEEEEEcCCCCccceEEC--CCC---CEEEEecCCCeEEEEeccccceeeeeec
Confidence 999997 7777777777778899999 888 7777788899999999999999888863
|
| >1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=1.8e-13 Score=140.30 Aligned_cols=221 Identities=11% Similarity=0.022 Sum_probs=148.9
Q ss_pred CeEEEEeC--CCCCCcceEc--CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEee-eccCcccccccCCCeEeeCCCcc
Q psy10778 303 NLIRLKMS--KELPATPVIR--PPLGATIATATTAPDCHTLWLGLTSGNILVYEYE-LNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 303 g~I~lw~~--~~~~~~~~~~--~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~-~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
+.|.++++ +++++..... ......+..++++|+|++|++++.+ .|.+|++. .+ +.. .......+ +.
T Consensus 14 ~~i~~~~~d~~~g~l~~~~~~~~~~~~~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g----~~~---~~~~~~~~-g~ 84 (365)
T 1jof_A 14 GAIFTVQFDDEKLTCKLIKRTEIPQDEPISWMTFDHERKNIYGAAMK-KWSSFAVKSPT----EIV---HEASHPIG-GH 84 (365)
T ss_dssp CEEEEEEEETTTTEEEEEEEEECCTTCCCSEEEECTTSSEEEEEEBT-EEEEEEEEETT----EEE---EEEEEECC-SS
T ss_pred CcEEEEEEECCCCCEEEeeEEccCCCCCCcEEEECCCCCEEEEEccc-eEEEEEECCCC----CEE---EeeEeecC-CC
Confidence 46776654 3443322211 1334467899999999999999887 99999987 33 111 01111111 23
Q ss_pred EEEEEEccCCCE--EEEEc-------------CCCcEEEEeCC-CCeEEEEeC----CCCCCCCeeEEEEeCCCCeEEEE
Q psy10778 378 VTDLYLCAGFSV--AVSSS-------------EDGTCLLWDIN-TIGYIREIP----CVDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 378 V~~l~~s~~~~~--l~sgs-------------~Dg~I~iwdl~-~~~~v~~l~----~~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
..+++|+|+|+. +++++ .+|++.+|++. +++....+. . + ...+.+++|+|+|++++++
T Consensus 85 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~g~v~v~~~~~~g~~~~~~~~~~~~-~-~~~~~~~~~spdG~~l~~~ 162 (365)
T 1jof_A 85 PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQ-E-NTGIHGMVFDPTETYLYSA 162 (365)
T ss_dssp GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCEEEEEEECTTCCEEEEEEEEECC-T-TCCEEEEEECTTSSEEEEE
T ss_pred CccEEECCCCCEEEEEEecCCcceeccceeecCCceEEEEccCCCCcCcceEeeEEeC-C-CCcceEEEECCCCCEEEEE
Confidence 456899999994 55553 68999999997 465544332 2 2 5679999999999988876
Q ss_pred eecCcCCCCeEEEEEeC--CcEE--EEee---cCCCeEEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCC--CCeEE---
Q psy10778 438 LQTTKTGGSILRLHTIN--AQLI--TSLA---SELRITSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGY--KLAHL--- 504 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~--g~~i--~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~--~~~~~--- 504 (556)
.. .++.|++|+++ |+.. ..+. +...+..++|+ |+| +++++++. ++.|.+|++. +++..
T Consensus 163 ~~----~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~s--pdg---~~l~v~~~~~~~v~v~~~~~~~g~~~~~~ 233 (365)
T 1jof_A 163 DL----TANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMH--PTG---NYLYALMEAGNRICEYVIDPATHMPVYTH 233 (365)
T ss_dssp ET----TTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEEC--TTS---SEEEEEETTTTEEEEEEECTTTCCEEEEE
T ss_pred cC----CCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEEC--CCC---CEEEEEECCCCeEEEEEEeCCCCcEEEcc
Confidence 52 46799999996 5543 3333 25678999999 999 77777664 7899999764 55542
Q ss_pred EEecC--C----CCC------CeEEEE-EecCCCEEEEEcCCC------cEEEEEcCC
Q psy10778 505 LTLNT--N----VAL------PVIAVT-YSCDSQHLYASNTEG------LVIIWESSS 543 (556)
Q Consensus 505 ~~~~~--~----h~~------~V~~l~-~s~dg~~l~sgs~Dg------~V~vwdl~~ 543 (556)
..+.. . +.. .+.+++ |+|||++|++++.++ .|.+|++..
T Consensus 234 ~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~ 291 (365)
T 1jof_A 234 HSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRD 291 (365)
T ss_dssp EEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECT
T ss_pred ceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECC
Confidence 22221 1 121 488999 999999988776533 899999963
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.59 E-value=2.4e-14 Score=161.00 Aligned_cols=232 Identities=8% Similarity=-0.011 Sum_probs=159.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCC-----ceEEEEEcCCCCEEEEEeCC---------CcEEEEEeeeccCcc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGA-----TIATATTAPDCHTLWLGLTS---------GNILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~-----~V~~i~~s~dg~~l~tgs~D---------g~I~vwd~~~~~~~~ 360 (556)
+++.+ ||.|++|+..+++....+. .|.. ....++|||||++|+.++.+ +.+.+||+.++
T Consensus 30 ~~~~~--~~~i~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~~~d~~~~---- 102 (740)
T 4a5s_A 30 YLYKQ--ENNILVFNAEYGNSSVFLE-NSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR---- 102 (740)
T ss_dssp EEEEE--TTEEEEEETTTCCEEEEEC-TTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT----
T ss_pred EEEEc--CCcEEEEECCCCceEEEEe-chhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEEEEECCCC----
Confidence 66665 9999999999988766654 4432 22448899999999999876 56679998875
Q ss_pred cccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCe-----------------e
Q psy10778 361 KIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV-----------------S 423 (556)
Q Consensus 361 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V-----------------~ 423 (556)
+ ...+..|...+...+|||||+.|+.++ |+.|.+||+.+++..+.....+ ...+ .
T Consensus 103 -----~-~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~-~~~~~~g~~~~v~~ee~~~~~~ 174 (740)
T 4a5s_A 103 -----Q-LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGK-EDIIYNGITDWVYEEEVFSAYS 174 (740)
T ss_dssp -----E-ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCB-TTTEEESBCCHHHHHHTSSSSB
T ss_pred -----c-EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCC-ccceecCcccccccchhcCCCc
Confidence 1 123566778899999999999998885 6899999999887554322102 1222 3
Q ss_pred EEEEeCCCCeEEEEeecCc-------------------------------CCCCeEEEEEeCC---c---EEEEee----
Q psy10778 424 HVTMSETNGEIASVLQTTK-------------------------------TGGSILRLHTINA---Q---LITSLA---- 462 (556)
Q Consensus 424 ~l~~sp~~~~i~s~s~~~~-------------------------------~~d~~I~iwdi~g---~---~i~~~~---- 462 (556)
.++|||||+.||.++.+.. .....|++||+.+ . ....+.
T Consensus 175 ~~~wSpDg~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~ 254 (740)
T 4a5s_A 175 ALWWSPNGTFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPAS 254 (740)
T ss_dssp CEEECTTSSEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHH
T ss_pred ceEECCCCCEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCcc
Confidence 5899999999998864221 0112688899876 3 333332
Q ss_pred ---cCCCeEEEEEeeCCCCCcceEEEEEeC----CCeEEEEeCCCCe----EE--EEe-cCCCCCCeE-----EEEEecC
Q psy10778 463 ---SELRITSVTFSNAPEGVSQNVIVTGHS----DGTIQLWSGYKLA----HL--LTL-NTNVALPVI-----AVTYSCD 523 (556)
Q Consensus 463 ---~~~~i~~i~~s~~pdg~~~~~l~tg~~----dg~I~iwd~~~~~----~~--~~~-~~~h~~~V~-----~l~~s~d 523 (556)
+...+..++|+ |+| ++++.... +..|++||+.+++ +. ..+ ..++...|. ..+|+||
T Consensus 255 ~~~~~~~~~~~~ws--pdg---~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspD 329 (740)
T 4a5s_A 255 MLIGDHYLCDVTWA--TQE---RISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLD 329 (740)
T ss_dssp HHTSCEEEEEEEEE--ETT---EEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTT
T ss_pred CCCCCeEEEEEEEe--CCC---eEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCC
Confidence 45678999999 888 76665432 3479999998876 21 111 113444443 7889999
Q ss_pred CCEEE-EEc-CCC--cEEEEEcCCCCC
Q psy10778 524 SQHLY-ASN-TEG--LVIIWESSSHNR 546 (556)
Q Consensus 524 g~~l~-sgs-~Dg--~V~vwdl~~~~~ 546 (556)
|+.++ ..+ .+| .|++|++.++..
T Consensus 330 G~~l~~~~s~~~G~~~l~~~~~~~~~~ 356 (740)
T 4a5s_A 330 GNSFYKIISNEEGYRHICYFQIDKKDC 356 (740)
T ss_dssp SSEEEEEEECTTSCEEEEEEETTCSSC
T ss_pred CCEEEEEEEcCCCceEEEEEECCCCce
Confidence 99876 554 344 688888876543
|
| >1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.9e-15 Score=167.64 Aligned_cols=197 Identities=14% Similarity=0.139 Sum_probs=142.0
Q ss_pred EEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCc---cEEEEEEccCCCEEEEEcC---------C
Q psy10778 329 TATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSA---CVTDLYLCAGFSVAVSSSE---------D 396 (556)
Q Consensus 329 ~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~---~V~~l~~s~~~~~l~sgs~---------D 396 (556)
+++|+|+|++++ .+.|++|++|++.++ +....+.+|.. .+.+++|||||+.|++++. +
T Consensus 20 ~~~~s~dg~~~~-~~~d~~i~~~~~~~g---------~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~ 89 (719)
T 1z68_A 20 FPNWISGQEYLH-QSADNNIVLYNIETG---------QSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYT 89 (719)
T ss_dssp CCEESSSSEEEE-ECTTSCEEEEESSSC---------CEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEE
T ss_pred ccEECCCCeEEE-EcCCCCEEEEEcCCC---------cEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecc
Confidence 678999996554 456999999999876 33344444433 3899999999999998876 7
Q ss_pred CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee--cCCCe------
Q psy10778 397 GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA--SELRI------ 467 (556)
Q Consensus 397 g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~--~~~~i------ 467 (556)
+.|++||+.+++.+..... ...+..++|||||+.|+.+. ++.|++|++. ++...... +...+
T Consensus 90 ~~i~~~d~~~g~~~~~~~l---~~~~~~~~~SPDG~~la~~~------~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~ 160 (719)
T 1z68_A 90 ATYYIYDLSNGEFVRGNEL---PRPIQYLCWSPVGSKLAYVY------QNNIYLKQRPGDPPFQITFNGRENKIFNGIPD 160 (719)
T ss_dssp EEEEEEETTTTEECCSSCC---CSSBCCEEECSSTTCEEEEE------TTEEEEESSTTSCCEECCCCCBTTTEEESSCC
T ss_pred eEEEEEECCCCccccceec---CcccccceECCCCCEEEEEE------CCeEEEEeCCCCCcEEEecCCCcCCeEccccc
Confidence 8999999998876321222 34588999999999999985 6799999997 44433221 11112
Q ss_pred -----------EEEEEeeCCCCCcceEEEEEeCCC----------------------------------eEEEEeCCCCe
Q psy10778 468 -----------TSVTFSNAPEGVSQNVIVTGHSDG----------------------------------TIQLWSGYKLA 502 (556)
Q Consensus 468 -----------~~i~~s~~pdg~~~~~l~tg~~dg----------------------------------~I~iwd~~~~~ 502 (556)
.+++|| ||| +.|++++.|. .|++||+.+++
T Consensus 161 ~v~~ee~~~~~~~~~wS--PDG---~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~~~~~~~l~~~d~~~~~ 235 (719)
T 1z68_A 161 WVYEEEMLATKYALWWS--PNG---KFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGAKNPVVRIFIIDTTYPA 235 (719)
T ss_dssp HHHHHHTTCSSCCEEEC--TTS---SEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTSCCCEEEEEEEESSCHH
T ss_pred ceeeeecccCcccEEEC--CCC---CEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCCCCCeeEEEEEECCCCC
Confidence 489999 999 8888877542 78899998876
Q ss_pred EE--EEec-----CCCCCCeEEEEEecCCCEEEEEcCC----CcEEEEE----cCCCCCcCe
Q psy10778 503 HL--LTLN-----TNVALPVIAVTYSCDSQHLYASNTE----GLVIIWE----SSSHNRTPK 549 (556)
Q Consensus 503 ~~--~~~~-----~~h~~~V~~l~~s~dg~~l~sgs~D----g~V~vwd----l~~~~~~~~ 549 (556)
.. ..+. .+|...+.+++||||++++++.... ..|.+|| +.+++....
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~~~ 297 (719)
T 1z68_A 236 YVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCPKT 297 (719)
T ss_dssp HHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECCGG
T ss_pred ccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceEEE
Confidence 42 1221 0577789999999998877764433 2488999 766554433
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.56 E-value=2.8e-13 Score=138.94 Aligned_cols=227 Identities=7% Similarity=-0.010 Sum_probs=149.1
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.|+.|.+||..+++....+.. +..+ .++++|||++++++. .+++|.+||..+. +.+..
T Consensus 29 ~d~~v~v~D~~t~~~~~~i~~-g~~p--~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~---------~~~~~ 96 (361)
T 2oiz_A 29 TESRVHVYDYTNGKFLGMVPT-AFNG--HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKL---------TFEKE 96 (361)
T ss_dssp GGCEEEEEETTTCCEEEEEEC-CEEE--EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTC---------CEEEE
T ss_pred ccCeEEEEECCCCeEEEEecC-CCCC--ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCC---------cEEEE
Confidence 578999999998887776653 3333 899999999999986 3678999997654 23344
Q ss_pred eeC------CCccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEE-eCCCCCCC---------CeeEEEEeCCCC
Q psy10778 371 LLG------HSACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIRE-IPCVDPNT---------PVSHVTMSETNG 432 (556)
Q Consensus 371 l~~------h~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~-l~~~h~~~---------~V~~l~~sp~~~ 432 (556)
+.. +......++++|+|++|+++.. +++|.+||+.+++.+.. +.. . .. .-..+++++++.
T Consensus 97 i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~-~-~~~~v~~~p~~~~~~~~~~~dg~ 174 (361)
T 2oiz_A 97 ISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAA-A-GCWSVIPQPNRPRSFMTICGDGG 174 (361)
T ss_dssp EEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGG-T-TEEEEEECTTSSSEEEEEETTSS
T ss_pred EEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecC-C-CcceeEEcCCCCeeEEEECCCCc
Confidence 332 2234667999999999988763 68999999999988887 543 1 10 112233333333
Q ss_pred eEEEEeecC---------------------------------cCCCCeEEEEEeCCc---EEEEeec-----------CC
Q psy10778 433 EIASVLQTT---------------------------------KTGGSILRLHTINAQ---LITSLAS-----------EL 465 (556)
Q Consensus 433 ~i~s~s~~~---------------------------------~~~d~~I~iwdi~g~---~i~~~~~-----------~~ 465 (556)
.++...... .+.++.|.++|+.+. .+..+.. ..
T Consensus 175 ~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~ 254 (361)
T 2oiz_A 175 LLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPG 254 (361)
T ss_dssp EEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEEC
T ss_pred EEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEecCCCceecccccccCccccccccccC
Confidence 222211000 002334555555311 1111110 01
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeC-----------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHS-----------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~-----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
....++++ +++ +.++++.. .+.|.+||+.+++.+.++. .+. +.+++|+|||++|++++. +
T Consensus 255 g~~~~a~~--~dg---~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~-~~~--p~~ia~spdg~~l~v~n~-~ 325 (361)
T 2oiz_A 255 GYNLVGLH--RAS---GRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIP-GRD--ALSMTIDQQRNLMLTLDG-G 325 (361)
T ss_dssp CSSCEEEE--TTT---TEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEE-CTT--CCEEEEETTTTEEEEECS-S
T ss_pred CeeEEEEe--cCC---CeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEe-cCC--eeEEEECCCCCEEEEeCC-C
Confidence 11126788 776 45554432 3589999999999999998 444 999999999999999887 9
Q ss_pred cEEEEEcCCC--CCcCee
Q psy10778 535 LVIIWESSSH--NRTPKF 550 (556)
Q Consensus 535 ~V~vwdl~~~--~~~~~~ 550 (556)
.|.+||..++ +.+..+
T Consensus 326 ~v~v~D~~t~~l~~~~~i 343 (361)
T 2oiz_A 326 NVNVYDISQPEPKLLRTI 343 (361)
T ss_dssp CEEEEECSSSSCEEEEEE
T ss_pred eEEEEECCCCcceeeEEe
Confidence 9999999998 655444
|
| >1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=2.6e-12 Score=126.45 Aligned_cols=198 Identities=8% Similarity=0.046 Sum_probs=153.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe------eCCCccEEEEEE-ccCCCEEEEEc
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL------LGHSACVTDLYL-CAGFSVAVSSS 394 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l------~~h~~~V~~l~~-s~~~~~l~sgs 394 (556)
++...+.+++++++++++++...++.|.+|+.... ....+ .+|...+.++++ .+++.++++..
T Consensus 27 g~~~~p~~v~~~~~g~l~v~~~~~~~i~~~d~~g~----------~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~ 96 (286)
T 1q7f_A 27 GQFTEPSGVAVNAQNDIIVADTNNHRIQIFDKEGR----------FKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTER 96 (286)
T ss_dssp TCBSCEEEEEECTTCCEEEEEGGGTEEEEECTTSC----------EEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEEC
T ss_pred CccCCCceEEECCCCCEEEEECCCCEEEEECCCCc----------EEEEecccCCCcccccCceEEEEEcCCCeEEEEcC
Confidence 45567899999999998888888999999986521 11222 234567899999 46777777764
Q ss_pred C-CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec---CCCeEEE
Q psy10778 395 E-DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS---ELRITSV 470 (556)
Q Consensus 395 ~-Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~---~~~i~~i 470 (556)
. ++.|.+|| .+++.+..+...+ ...+..+++++++..+++.. .++.|.+||.+++.+..+.. ...+.++
T Consensus 97 ~~~~~i~~~d-~~g~~~~~~~~~~-~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~~~g~~~~~~~~~~~~~~p~~i 169 (286)
T 1q7f_A 97 SPTHQIQIYN-QYGQFVRKFGATI-LQHPRGVTVDNKGRIIVVEC-----KVMRVIIFDQNGNVLHKFGCSKHLEFPNGV 169 (286)
T ss_dssp GGGCEEEEEC-TTSCEEEEECTTT-CSCEEEEEECTTSCEEEEET-----TTTEEEEECTTSCEEEEEECTTTCSSEEEE
T ss_pred CCCCEEEEEC-CCCcEEEEecCcc-CCCceEEEEeCCCCEEEEEC-----CCCEEEEEcCCCCEEEEeCCCCccCCcEEE
Confidence 3 89999999 5677777775413 46789999999998777665 67899999998888777742 3568999
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCC-cEEEEEcC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEG-LVIIWESS 542 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg-~V~vwdl~ 542 (556)
+++ ++| +++++...++.|++||. +++.+..+.. ++...+.+++++++|+++++...++ .|.+|+..
T Consensus 170 ~~~--~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~ 237 (286)
T 1q7f_A 170 VVN--DKQ---EIFISDNRAHCVKVFNY-EGQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD 237 (286)
T ss_dssp EEC--SSS---EEEEEEGGGTEEEEEET-TCCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT
T ss_pred EEC--CCC---CEEEEECCCCEEEEEcC-CCCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC
Confidence 999 888 88888888999999997 6677777752 2236789999999999888888776 99999964
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=1e-13 Score=142.44 Aligned_cols=233 Identities=11% Similarity=0.034 Sum_probs=153.8
Q ss_pred eEEeccC-CC--eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 295 MICWNEC-DN--LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 295 ~l~~gs~-Dg--~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
.|++++. +| .|.+|+..+++...... ++...+..++|+|||+.|+.++.++.|++||+.++ +.....
T Consensus 49 ~l~~~~~~~g~~~l~~~d~~~g~~~~lt~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~g---------~~~~~~ 118 (388)
T 3pe7_A 49 KLLFGGAFDGPWNYYLLDLNTQVATQLTE-GRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLATL---------EENVVY 118 (388)
T ss_dssp EEEEEECTTSSCEEEEEETTTCEEEECCC-SSCBCSSSCEECTTSSEEEEEETTTEEEEEETTTC---------CEEEEE
T ss_pred EEEEEEcCCCCceEEEEeCCCCceEEeee-CCCCCccceEEcCCCCEEEEEeCCCeEEEEECCCC---------cceeee
Confidence 4555554 66 48888988876554443 45555556789999999999999999999998875 223344
Q ss_pred eCCCccEEEEE--EccCCCEEEEE----------------------cCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEE
Q psy10778 372 LGHSACVTDLY--LCAGFSVAVSS----------------------SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTM 427 (556)
Q Consensus 372 ~~h~~~V~~l~--~s~~~~~l~sg----------------------s~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~ 427 (556)
..+...+.... ++++++.++.. +.++.|.+||+.+++....... ...+..++|
T Consensus 119 ~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~---~~~~~~~~~ 195 (388)
T 3pe7_A 119 QVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQE---NQWLGHPIY 195 (388)
T ss_dssp ECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEE
T ss_pred echhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecC---CccccccEE
Confidence 45555554443 48899887742 2457899999998876554443 577899999
Q ss_pred eC-CCCeEEEEeecCc-CCCCeEEEEEeCCcEEEEee-cC--CCeEEEEEeeCCCCCcceEEEE-EeCCC----eEEEEe
Q psy10778 428 SE-TNGEIASVLQTTK-TGGSILRLHTINAQLITSLA-SE--LRITSVTFSNAPEGVSQNVIVT-GHSDG----TIQLWS 497 (556)
Q Consensus 428 sp-~~~~i~s~s~~~~-~~d~~I~iwdi~g~~i~~~~-~~--~~i~~i~~s~~pdg~~~~~l~t-g~~dg----~I~iwd 497 (556)
+| +++.|+.+..... .....|.++|..+.....+. +. ..+..++|+ |+| +.|+. +..++ .|++||
T Consensus 196 sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s--pdg---~~l~~~~~~~~~~~~~l~~~d 270 (388)
T 3pe7_A 196 RPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHEFWV--PDG---SALVYVSYLKGSPDRFIYSAD 270 (388)
T ss_dssp ETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEEEEC--TTS---SCEEEEEEETTCCCEEEEEEC
T ss_pred CCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccceEC--CCC---CEEEEEecCCCCCcceEEEEe
Confidence 99 9999988773110 01347888888755444443 33 257788999 899 65544 33322 399999
Q ss_pred CCCCeEE--EEecCCCCC---CeEEEEEecCCCEEEEE---------cCCCcEEEEEcCCCCC
Q psy10778 498 GYKLAHL--LTLNTNVAL---PVIAVTYSCDSQHLYAS---------NTEGLVIIWESSSHNR 546 (556)
Q Consensus 498 ~~~~~~~--~~~~~~h~~---~V~~l~~s~dg~~l~sg---------s~Dg~V~vwdl~~~~~ 546 (556)
+.+++.. ..+. ++.. ....++|+|||+.|+.. ..++.|++||+.+++.
T Consensus 271 ~~~g~~~~l~~~~-~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (388)
T 3pe7_A 271 PETLENRQLTSMP-ACSHLMSNYDGSLMVGDGSDAPVDVQDDSGYKIENDPFLYVFNMKNGTQ 332 (388)
T ss_dssp TTTCCEEEEEEEC-CEEEEEECTTSSEEEEEECCC------------CCCCEEEEEETTTTEE
T ss_pred cCCCceEEEEcCC-CceeeeecCCCCeEccCCCcceeEeeeccccccCCCCEEEEEeccCCce
Confidence 9888743 3332 2100 01123799999888754 4566899999988554
|
| >3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.8e-13 Score=138.17 Aligned_cols=200 Identities=10% Similarity=0.064 Sum_probs=140.5
Q ss_pred EEEcCCCCEEEEEeC-CCc--EEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10778 330 ATTAPDCHTLWLGLT-SGN--ILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406 (556)
Q Consensus 330 i~~s~dg~~l~tgs~-Dg~--I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~ 406 (556)
.+|+|||++|+.++. +|. |.+||+.++ +......++...+..++|+|+++.|+.++.++.+.+||+.+
T Consensus 41 ~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g---------~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~ 111 (388)
T 3pe7_A 41 KCFTRDGSKLLFGGAFDGPWNYYLLDLNTQ---------VATQLTEGRGDNTFGGFLSPDDDALFYVKDGRNLMRVDLAT 111 (388)
T ss_dssp CCBCTTSCEEEEEECTTSSCEEEEEETTTC---------EEEECCCSSCBCSSSCEECTTSSEEEEEETTTEEEEEETTT
T ss_pred ccCCCCCCEEEEEEcCCCCceEEEEeCCCC---------ceEEeeeCCCCCccceEEcCCCCEEEEEeCCCeEEEEECCC
Confidence 789999999999887 775 666666544 22233445655565778999999999999999999999999
Q ss_pred CeEEEEeCCCCCCCCeeEEE--EeCCCCeEEEEeecC-----------------cCCCCeEEEEEeC-CcEEEEeecCCC
Q psy10778 407 IGYIREIPCVDPNTPVSHVT--MSETNGEIASVLQTT-----------------KTGGSILRLHTIN-AQLITSLASELR 466 (556)
Q Consensus 407 ~~~v~~l~~~h~~~~V~~l~--~sp~~~~i~s~s~~~-----------------~~~d~~I~iwdi~-g~~i~~~~~~~~ 466 (556)
++....... + ...+.... +++++..++...... ...+..|.+||+. |+......+...
T Consensus 112 g~~~~~~~~-~-~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~~~~~ 189 (388)
T 3pe7_A 112 LEENVVYQV-P-AEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQENQW 189 (388)
T ss_dssp CCEEEEEEC-C-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEEESSC
T ss_pred Ccceeeeec-h-hhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeecCCcc
Confidence 887766665 4 44444333 489988887542110 1134789999997 655555566778
Q ss_pred eEEEEEeeCC-CCCcceEEEEEeCC------CeEEEEeCCCCeEEEEecCCCC-CCeEEEEEecCCCEEEEEcC-CC---
Q psy10778 467 ITSVTFSNAP-EGVSQNVIVTGHSD------GTIQLWSGYKLAHLLTLNTNVA-LPVIAVTYSCDSQHLYASNT-EG--- 534 (556)
Q Consensus 467 i~~i~~s~~p-dg~~~~~l~tg~~d------g~I~iwd~~~~~~~~~~~~~h~-~~V~~l~~s~dg~~l~sgs~-Dg--- 534 (556)
+..++|+ | +| +.|+....+ ..|.++|...++ ...+..... ..+..++|+|||+.|+..+. ++
T Consensus 190 ~~~~~~s--p~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~-~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~ 263 (388)
T 3pe7_A 190 LGHPIYR--PYDD---STVAFCHEGPHDLVDARMWLINEDGTN-MRKVKTHAEGESCTHEFWVPDGSALVYVSYLKGSPD 263 (388)
T ss_dssp EEEEEEE--TTEE---EEEEEEECSCTTTSSCSEEEEETTSCC-CEESCCCCTTEEEEEEEECTTSSCEEEEEEETTCCC
T ss_pred ccccEEC--CCCC---CEEEEEEecCCCCCcceEEEEeCCCCc-eEEeeeCCCCcccccceECCCCCEEEEEecCCCCCc
Confidence 9999999 8 88 777776653 378888875544 344442222 35788999999997755433 22
Q ss_pred -cEEEEEcCCCCC
Q psy10778 535 -LVIIWESSSHNR 546 (556)
Q Consensus 535 -~V~vwdl~~~~~ 546 (556)
.|++||+.+++.
T Consensus 264 ~~l~~~d~~~g~~ 276 (388)
T 3pe7_A 264 RFIYSADPETLEN 276 (388)
T ss_dssp EEEEEECTTTCCE
T ss_pred ceEEEEecCCCce
Confidence 399999988764
|
| >3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A* | Back alignment and structure |
|---|
Probab=99.52 E-value=1.7e-12 Score=131.06 Aligned_cols=207 Identities=12% Similarity=0.048 Sum_probs=155.3
Q ss_pred CCceEEEEEcCCCCEEEEEeCC------------------------CcEEEEEeeeccCcccccccCCCeEee-CCCccE
Q psy10778 324 GATIATATTAPDCHTLWLGLTS------------------------GNILVYEYELNASTNKIEFCKPPTILL-GHSACV 378 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~D------------------------g~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V 378 (556)
.+.+.+++++++|+++++...+ ++|.+||..++ +...... ++....
T Consensus 23 l~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g---------~~~~~~~~~~~~~p 93 (329)
T 3fvz_A 23 PGQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNA---------EILQSSGKNLFYLP 93 (329)
T ss_dssp CSCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTC---------CEEEEECTTTCSSE
T ss_pred cCCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCC---------eEEeccCCCccCCc
Confidence 4578999999999999888777 47888887654 2222222 455678
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEeCCCCe-EEEEeC---------CCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCe
Q psy10778 379 TDLYLCAGFSVAVSSSEDGTCLLWDINTIG-YIREIP---------CVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~-~v~~l~---------~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~ 447 (556)
.+++++++|+++++.+.++.|++||..... .+..+. . + -.....++++| ++..+++.+. .++.
T Consensus 94 ~gia~d~~g~l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~-~-~~~P~~ia~~~~~g~lyv~d~~----~~~~ 167 (329)
T 3fvz_A 94 HGLSIDTDGNYWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQN-H-FCQPTDVAVEPSTGAVFVSDGY----CNSR 167 (329)
T ss_dssp EEEEECTTSCEEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTT-C-CSSEEEEEECTTTCCEEEEECS----SCCE
T ss_pred eEEEECCCCCEEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCcc-c-cCCCcEEEEeCCCCeEEEEeCC----CCCe
Confidence 999999999999999999999999986432 555552 2 3 34689999999 6666666531 3789
Q ss_pred EEEEEeCCcEEEEeecC-----------CCeEEEEEeeCCC-CCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCC
Q psy10778 448 LRLHTINAQLITSLASE-----------LRITSVTFSNAPE-GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALP 514 (556)
Q Consensus 448 I~iwdi~g~~i~~~~~~-----------~~i~~i~~s~~pd-g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~ 514 (556)
|++|+.+|+.+..+... .....++++ ++ + +++++...++.|++||..+++.+..+.. .+...
T Consensus 168 I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d--~~~g---~l~v~d~~~~~I~~~~~~~G~~~~~~~~~~~~~~ 242 (329)
T 3fvz_A 168 IVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALV--PHLD---QLCVADRENGRIQCFKTDTKEFVREIKHASFGRN 242 (329)
T ss_dssp EEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEE--TTTT---EEEEEETTTTEEEEEETTTCCEEEEECCTTTTTC
T ss_pred EEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEE--CCCC---EEEEEECCCCEEEEEECCCCcEEEEEeccccCCC
Confidence 99999889888777421 238899999 87 7 7888888999999999988999888853 45677
Q ss_pred eEEEEEec------CCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 515 VIAVTYSC------DSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 515 V~~l~~s~------dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
+.+++++| +|+..++...+..|++|++.+++.+..+
T Consensus 243 ~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~ 284 (329)
T 3fvz_A 243 VFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVF 284 (329)
T ss_dssp EEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEE
T ss_pred cceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEE
Confidence 89999999 3333333344568999999887766554
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.51 E-value=5.8e-13 Score=147.34 Aligned_cols=221 Identities=13% Similarity=0.038 Sum_probs=151.4
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceE---------EEEEc--CCCCE-EEEEeC-CCcEEEEEee--e-ccCccccc
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIA---------TATTA--PDCHT-LWLGLT-SGNILVYEYE--L-NASTNKIE 363 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~---------~i~~s--~dg~~-l~tgs~-Dg~I~vwd~~--~-~~~~~~~~ 363 (556)
+.++...||....+.....+. .|...+. ..+|+ |||+. |+.++. +..|.+++.. . +
T Consensus 44 ~~~~~~~l~~~~~~~~~~~l~-~~~~~~~~~~~~~~~~~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~------- 115 (662)
T 3azo_A 44 AEAGRATLVRRRADGAEESAL-PAPWNVRNRVFEYSGFPWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGA------- 115 (662)
T ss_dssp TTTTEEEEEEECTTSCEEESS-CTTCCBCCCGGGTCCCCEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCC-------
T ss_pred ccCCcEEEEEECCCCCcceeC-CCCccccccccccCCccceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCC-------
Confidence 557888888853332222332 4545555 56565 99998 776654 3444444433 1 2
Q ss_pred ccCCCeEeeC-----CCccEEEEEEccCCCEEEEEcCC----------CcEEEEeCCC------CeEEEEeC-CCCCCCC
Q psy10778 364 FCKPPTILLG-----HSACVTDLYLCAGFSVAVSSSED----------GTCLLWDINT------IGYIREIP-CVDPNTP 421 (556)
Q Consensus 364 ~~~~~~~l~~-----h~~~V~~l~~s~~~~~l~sgs~D----------g~I~iwdl~~------~~~v~~l~-~~h~~~~ 421 (556)
....+.. |...+.+++|+|||+.|++++.+ ..|.+||+.+ ++. +.+. . + ...
T Consensus 116 ---~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~l~~~-~-~~~ 189 (662)
T 3azo_A 116 ---VPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAV-RELSDD-A-HRF 189 (662)
T ss_dssp ---CCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGS-EESSCS-C-SSE
T ss_pred ---CCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCce-eEEEec-C-CCc
Confidence 1234444 67789999999999999988877 5899999987 554 4555 4 4 567
Q ss_pred eeEEEEeCCCCeEEEEeecCcC---CCCeEEEEEeC--C---cEEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCC-
Q psy10778 422 VSHVTMSETNGEIASVLQTTKT---GGSILRLHTIN--A---QLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDG- 491 (556)
Q Consensus 422 V~~l~~sp~~~~i~s~s~~~~~---~d~~I~iwdi~--g---~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg- 491 (556)
+..++|||||+.|+.++..... ....|++||++ | +....... ...+..++|+ |+| +++++++.+|
T Consensus 190 ~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~s--pdg---~l~~~~~~~~~ 264 (662)
T 3azo_A 190 VTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWA--PDG---SLIVATDRTGW 264 (662)
T ss_dssp ECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEEC--TTS---CEEEEECTTSS
T ss_pred ccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEEC--CCC---eEEEEECCCCC
Confidence 8889999999999987732100 12589999997 3 33333333 5789999999 999 7888888888
Q ss_pred -eEEEEeCCCCeEEEEecCCCCCC--------eEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 492 -TIQLWSGYKLAHLLTLNTNVALP--------VIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 492 -~I~iwd~~~~~~~~~~~~~h~~~--------V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
.|.+||+.+++...... .+... +.+++|+++++++++++. |.+++|.+
T Consensus 265 ~~l~~~~~~~~~~~~l~~-~~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~ 321 (662)
T 3azo_A 265 WNLHRVDPATGAATQLCR-REEEFAGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGIL 321 (662)
T ss_dssp CEEEEECTTTCCEEESSC-CSSBSSCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEE
T ss_pred eEEEEEECCCCceeeccc-ccccccCccccccCceEeEeCCCEEEEEEEc-CccEEEEE
Confidence 67777776666543333 22221 567899999999999998 99999944
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.50 E-value=8.1e-13 Score=133.60 Aligned_cols=207 Identities=12% Similarity=0.052 Sum_probs=139.6
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---Cc--EEEEEeeeccCcccccccCCCeEeeCCC
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---GN--ILVYEYELNASTNKIEFCKPPTILLGHS 375 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---g~--I~vwd~~~~~~~~~~~~~~~~~~l~~h~ 375 (556)
.++.|.+|+..+++...+ ..+.+++|+|||+.|+.++.+ +. |.+|++.++ +. ..+..+.
T Consensus 41 ~~~~l~~~d~~~~~~~~l------~~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g---------~~-~~l~~~~ 104 (347)
T 2gop_A 41 YENTIVIENLKNNARRFI------ENATMPRISPDGKKIAFMRANEEKKVSEIWVADLETL---------SS-KKILEAK 104 (347)
T ss_dssp EEEEEEEEETTTCCEEEE------ESCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTT---------EE-EEEEEES
T ss_pred ccceEEEEeCCCCceEEc------ccCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCC---------ce-EEEEcCC
Confidence 357789999987764333 458899999999999988754 34 555555433 11 2233333
Q ss_pred ccEEEEEEccCCCEEEEEcC---------------------------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe
Q psy10778 376 ACVTDLYLCAGFSVAVSSSE---------------------------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS 428 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~---------------------------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s 428 (556)
. +..++|+|+|+.|+.++. ...|.+||+.+++.++.+.. . .+..++|+
T Consensus 105 ~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~---~-~~~~~~~s 179 (347)
T 2gop_A 105 N-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK---P-RFSSGIWH 179 (347)
T ss_dssp E-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE---E-TTCEEEEE
T ss_pred C-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC---C-CcccccCC
Confidence 4 999999999998887763 25799999998876566654 4 67899999
Q ss_pred CCCCeEEEEeecCcC---C-CCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC--------CeEEEE
Q psy10778 429 ETNGEIASVLQTTKT---G-GSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD--------GTIQLW 496 (556)
Q Consensus 429 p~~~~i~s~s~~~~~---~-d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d--------g~I~iw 496 (556)
|+| .++++...... . ...|.++| .++......+ ..+..+ + |+| +.|+.++.+ ..|.+|
T Consensus 180 pdg-~~~~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~-~~~~~~--s--pdg---~~l~~~~~~~~~~~~~~~~l~~~ 249 (347)
T 2gop_A 180 RDK-IVVNVPHREIIPQYFKFWDIYIWE-DGKEEKMFEK-VSFYAV--D--SDG---ERILLYGKPEKKYMSEHNKLYIY 249 (347)
T ss_dssp TTE-EEEEEECCCSSCCSSCCEEEEEEE-TTEEEEEEEE-ESEEEE--E--ECS---SCEEEEECCSSSCCCSSCEEEEE
T ss_pred CCe-EEEEEecccccccccccccEEEeC-CCceEEeccC-cceeeE--C--CCC---CEEEEEEccccCCccccceEEEE
Confidence 999 66665421000 0 22455556 4544333333 444443 6 888 677666543 478888
Q ss_pred eCCCCeEEEEecCCCCCCeEE-EEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 497 SGYKLAHLLTLNTNVALPVIA-VTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 497 d~~~~~~~~~~~~~h~~~V~~-l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
| +++.. .+..++...+.. +.|+ |+ ++++++.+|.+++| +.++
T Consensus 250 d--~~~~~-~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g 292 (347)
T 2gop_A 250 D--GKEVM-GILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDG 292 (347)
T ss_dssp C--SSCEE-ESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESS
T ss_pred C--CCceE-eccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCC
Confidence 8 55544 343356678886 9999 88 88999999999999 8743
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=128.32 Aligned_cols=223 Identities=8% Similarity=-0.031 Sum_probs=163.7
Q ss_pred ccCCCeEEEEeCCCCCCcceEcC-----CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 299 NECDNLIRLKMSKELPATPVIRP-----PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~~-----~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
|+.+++|.++|.++++....+.. ........+++. +++..++...++.|.+||..++ +.+..+.
T Consensus 13 g~~~~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~-~~~lyv~~~~~~~v~viD~~t~---------~~~~~i~- 81 (328)
T 3dsm_A 13 QYSNATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIR-DGIGWIVVNNSHVIFAIDINTF---------KEVGRIT- 81 (328)
T ss_dssp TSCCBEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEE-TTEEEEEEGGGTEEEEEETTTC---------CEEEEEE-
T ss_pred CCCCceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEE-CCEEEEEEcCCCEEEEEECccc---------EEEEEcC-
Confidence 45689999999998765443311 112345677774 3455666667899999998876 3345554
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-----CCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPN-----TPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~-----~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
.......+++++++++.++...++.|.+||+.+++....+.. . . .....+++ +++.+.++... .++.|
T Consensus 82 ~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~-g-~~~~~~~~p~~i~~--~~~~lyv~~~~---~~~~v 154 (328)
T 3dsm_A 82 GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC-P-DMDMESGSTEQMVQ--YGKYVYVNCWS---YQNRI 154 (328)
T ss_dssp CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC-T-TCCTTTCBCCCEEE--ETTEEEEEECT---TCCEE
T ss_pred CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc-C-CccccCCCcceEEE--ECCEEEEEcCC---CCCEE
Confidence 346688999999986656655899999999999998887775 2 2 15667777 35555555410 27899
Q ss_pred EEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC----------CeEEEEeCCCCeEEEEecCCCCCCeEE
Q psy10778 449 RLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD----------GTIQLWSGYKLAHLLTLNTNVALPVIA 517 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d----------g~I~iwd~~~~~~~~~~~~~h~~~V~~ 517 (556)
.++|+. ++.+..+........++++ ++| ++++++..+ +.|.++|..+++....+..........
T Consensus 155 ~viD~~t~~~~~~i~~g~~p~~i~~~--~dG---~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~ 229 (328)
T 3dsm_A 155 LKIDTETDKVVDELTIGIQPTSLVMD--KYN---KMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSE 229 (328)
T ss_dssp EEEETTTTEEEEEEECSSCBCCCEEC--TTS---EEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEE
T ss_pred EEEECCCCeEEEEEEcCCCccceEEc--CCC---CEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCcee
Confidence 999997 7777777766677889998 888 777766654 799999999999887776322347899
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 518 VTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
++++|+++.|+++.. .|.+||..+++.
T Consensus 230 la~~~d~~~lyv~~~--~v~~~d~~t~~~ 256 (328)
T 3dsm_A 230 VQLNGTRDTLYWINN--DIWRMPVEADRV 256 (328)
T ss_dssp EEECTTSCEEEEESS--SEEEEETTCSSC
T ss_pred EEEecCCCEEEEEcc--EEEEEECCCCce
Confidence 999999999998765 899999988654
|
| >4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=2.6e-13 Score=152.56 Aligned_cols=195 Identities=13% Similarity=0.091 Sum_probs=142.4
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCcc-----EEEEEEccCCCEEEEEcCC----
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSAC-----VTDLYLCAGFSVAVSSSED---- 396 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~-----V~~l~~s~~~~~l~sgs~D---- 396 (556)
...+++|+|||++++++ ||+|++|++.++ +....+.+|... ...++|||||+.|++++.+
T Consensus 18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~ 86 (740)
T 4a5s_A 18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYG---------NSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQW 86 (740)
T ss_dssp CCCCEEECSSSEEEEEE--TTEEEEEETTTC---------CEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECS
T ss_pred cccccEECCCCcEEEEc--CCcEEEEECCCC---------ceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeE
Confidence 35578999999988886 899999999876 333455666532 2458899999999998876
Q ss_pred -----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec---CCCe-
Q psy10778 397 -----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS---ELRI- 467 (556)
Q Consensus 397 -----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~---~~~i- 467 (556)
+.+.+||+.+++.. .+.. + ...+..++|||||+.||.+. ++.|++|++.+.....+.. ...+
T Consensus 87 r~~~~~~~~~~d~~~~~~~-~l~~-~-~~~~~~~~~SPdG~~la~~~------~~~i~~~~~~~~~~~~lt~~g~~~~~~ 157 (740)
T 4a5s_A 87 RHSYTASYDIYDLNKRQLI-TEER-I-PNNTQWVTWSPVGHKLAYVW------NNDIYVKIEPNLPSYRITWTGKEDIIY 157 (740)
T ss_dssp SSCEEEEEEEEETTTTEEC-CSSC-C-CTTEEEEEECSSTTCEEEEE------TTEEEEESSTTSCCEECCSCCBTTTEE
T ss_pred EEccceEEEEEECCCCcEE-Eccc-C-CCcceeeEECCCCCEEEEEE------CCeEEEEECCCCceEEEcCCCCcccee
Confidence 56779999998754 4555 6 67899999999999999885 6899999997332223221 1112
Q ss_pred ----------------EEEEEeeCCCCCcceEEEEEeCC------------------------------------CeEEE
Q psy10778 468 ----------------TSVTFSNAPEGVSQNVIVTGHSD------------------------------------GTIQL 495 (556)
Q Consensus 468 ----------------~~i~~s~~pdg~~~~~l~tg~~d------------------------------------g~I~i 495 (556)
.++.|| ||| +.|+.++.| ..|++
T Consensus 158 ~g~~~~v~~ee~~~~~~~~~wS--pDg---~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v 232 (740)
T 4a5s_A 158 NGITDWVYEEEVFSAYSALWWS--PNG---TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFV 232 (740)
T ss_dssp ESBCCHHHHHHTSSSSBCEEEC--TTS---SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEE
T ss_pred cCcccccccchhcCCCcceEEC--CCC---CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEE
Confidence 358999 999 778776422 15888
Q ss_pred EeCCC---Ce--EEEEecC-----CCCCCeEEEEEecCCCEEEEEcC----CCcEEEEEcCCCC
Q psy10778 496 WSGYK---LA--HLLTLNT-----NVALPVIAVTYSCDSQHLYASNT----EGLVIIWESSSHN 545 (556)
Q Consensus 496 wd~~~---~~--~~~~~~~-----~h~~~V~~l~~s~dg~~l~sgs~----Dg~V~vwdl~~~~ 545 (556)
||+.+ ++ ....+.. ++...+..++|+|||+.++.... +..|.+||+.+++
T Consensus 233 ~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 233 VNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRIQNYSVMDICDYDESS 296 (740)
T ss_dssp EETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESSTTEEEEEEEEEETTT
T ss_pred EECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCc
Confidence 99987 63 2333432 26777999999999997665533 3479999998876
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4.1e-12 Score=123.53 Aligned_cols=225 Identities=10% Similarity=-0.033 Sum_probs=158.0
Q ss_pred eccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee-CCCc
Q psy10778 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSA 376 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~ 376 (556)
....++.|.+|+..+.... .+...+...+.+++++++|+.+++.. ++.|.+|+.... ....+. ....
T Consensus 41 ~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~----------~~~~~~~~~~~ 108 (270)
T 1rwi_B 41 SEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSN----------NQTVLPFDGLN 108 (270)
T ss_dssp ECSSSCEEEEECC-----E-ECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECTTCS----------CCEECCCCSCS
T ss_pred ccCCCCcEEEecCCCcccc-eEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeCCCc----------eEeeeecCCcC
Confidence 4467788988987654322 22223445678999999998666655 889999986643 112222 2335
Q ss_pred cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc
Q psy10778 377 CVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ 456 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~ 456 (556)
.+.+++++++++++++...++.|.+|+..+......... . ...+..+++++++..+++.. .++.|.+||.++.
T Consensus 109 ~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~-~-~~~p~~i~~~~~g~l~v~~~-----~~~~i~~~~~~~~ 181 (270)
T 1rwi_B 109 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-G-LNDPDGVAVDNSGNVYVTDT-----DNNRVVKLEAESN 181 (270)
T ss_dssp SEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCC-S-CCSCCCEEECTTCCEEEEEG-----GGTEEEEECTTTC
T ss_pred CCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccc-c-CCCceeEEEeCCCCEEEEEC-----CCCEEEEEecCCC
Confidence 789999999999888888889999998765543332222 2 35678999999988666655 5689999999854
Q ss_pred EEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 457 LITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 457 ~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
..... .....+.+++++ ++| +++++...++.|.+|+........ ....+...+.+++++++|+++++...++
T Consensus 182 ~~~~~~~~~~~~p~~i~~d--~~g---~l~v~~~~~~~v~~~~~~~~~~~~-~~~~~~~~p~~i~~~~~g~l~v~~~~~~ 255 (270)
T 1rwi_B 182 NQVVLPFTDITAPWGIAVD--EAG---TVYVTEHNTNQVVKLLAGSTTSTV-LPFTGLNTPLAVAVDSDRTVYVADRGND 255 (270)
T ss_dssp CEEECCCSSCCSEEEEEEC--TTC---CEEEEETTTSCEEEECTTCSCCEE-CCCCSCSCEEEEEECTTCCEEEEEGGGT
T ss_pred ceEeecccCCCCceEEEEC--CCC---CEEEEECCCCcEEEEcCCCCccee-eccCCCCCceeEEECCCCCEEEEECCCC
Confidence 43332 223678899999 888 788888788999999986544333 3213346789999999999888989999
Q ss_pred cEEEEEcCCCCCc
Q psy10778 535 LVIIWESSSHNRT 547 (556)
Q Consensus 535 ~V~vwdl~~~~~~ 547 (556)
+|.++++...+..
T Consensus 256 ~v~~~~~~~~~~~ 268 (270)
T 1rwi_B 256 RVVKLTSLEHHHH 268 (270)
T ss_dssp EEEEECCCGGGSC
T ss_pred EEEEEcCCCcccc
Confidence 9999999875543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.49 E-value=2.1e-11 Score=122.53 Aligned_cols=224 Identities=9% Similarity=0.015 Sum_probs=156.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+++.+..++.|.+|+.++++...... .+...+.+++++++|++++++..+ +.|.+|+..++ .....
T Consensus 58 l~~~~~~~~~i~~~d~~~~~~~~~~~-~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~---------~~~~~ 127 (333)
T 2dg1_A 58 LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGD---------NLQDI 127 (333)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSC---------SCEEE
T ss_pred EEEEECCCCEEEEEeCCCCcEEEEee-CCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCC---------EEEEE
Confidence 55567788999999998876555442 456789999999999988877766 68888887654 11112
Q ss_pred ee--CCCccEEEEEEccCCCEEEEEcC------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 371 LL--GHSACVTDLYLCAGFSVAVSSSE------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 371 l~--~h~~~V~~l~~s~~~~~l~sgs~------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
+. .+...+.+++++++|+++++... .+.|..+|..+++....... ...+..++++|+++.++.+..
T Consensus 128 ~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~~~~~i~~~~dg~~l~v~~~--- 201 (333)
T 2dg1_A 128 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN---ISVANGIALSTDEKVLWVTET--- 201 (333)
T ss_dssp ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE---ESSEEEEEECTTSSEEEEEEG---
T ss_pred EccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC---CCcccceEECCCCCEEEEEeC---
Confidence 21 24467899999999998887654 35666777665544333332 355789999999987665542
Q ss_pred CCCCeEEEEEeC--CcEEEEe------e--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 443 TGGSILRLHTIN--AQLITSL------A--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~~------~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
.++.|.+||++ +..+..+ . ....+..++++ ++| +++++...++.|.+||. +++.+..+.. +.
T Consensus 202 -~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d--~~G---~l~v~~~~~~~v~~~d~-~g~~~~~~~~-~~ 273 (333)
T 2dg1_A 202 -TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID--SDD---NLYVAMYGQGRVLVFNK-RGYPIGQILI-PG 273 (333)
T ss_dssp -GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB--TTC---CEEEEEETTTEEEEECT-TSCEEEEEEC-TT
T ss_pred -CCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEEC--CCC---CEEEEEcCCCEEEEECC-CCCEEEEEEc-CC
Confidence 56899999994 4432211 1 12367889999 888 78888778899999998 6777777752 22
Q ss_pred C------CeEEEEEecCCCEEEEEcCCC------cEEEEEcC
Q psy10778 513 L------PVIAVTYSCDSQHLYASNTEG------LVIIWESS 542 (556)
Q Consensus 513 ~------~V~~l~~s~dg~~l~sgs~Dg------~V~vwdl~ 542 (556)
. .+.+++|++|++.|+.++.+| .|...++.
T Consensus 274 ~~~g~~~~~~~~~~~~dg~~L~v~~~~g~~~~~~~l~~~~~~ 315 (333)
T 2dg1_A 274 RDEGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 315 (333)
T ss_dssp GGGTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CccccccCcceEEECCCCCEEEEEeCccCCCCCceEEEEecc
Confidence 2 689999999987777666553 45555554
|
| >3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis} | Back alignment and structure |
|---|
Probab=99.46 E-value=4.6e-12 Score=127.97 Aligned_cols=234 Identities=9% Similarity=-0.061 Sum_probs=163.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|.++|..+++.+..+. .......++++++++..++...++.|.+||..++ +....+...
T Consensus 56 lyv~~~~~~~v~viD~~t~~~~~~i~--~~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~---------~~~~~i~~g 124 (328)
T 3dsm_A 56 GWIVVNNSHVIFAIDINTFKEVGRIT--GFTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTY---------EITGYIECP 124 (328)
T ss_dssp EEEEEGGGTEEEEEETTTCCEEEEEE--CCSSEEEEEEEETTEEEEEEBSCSEEEEEETTTT---------EEEEEEECT
T ss_pred EEEEEcCCCEEEEEECcccEEEEEcC--CCCCCcEEEEeCCCeEEEEECCCCeEEEEECCCC---------eEEEEEEcC
Confidence 55555678999999999988877664 3467889999888854444448899999998765 222233322
Q ss_pred C-----ccEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC-----
Q psy10778 375 S-----ACVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT----- 443 (556)
Q Consensus 375 ~-----~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~----- 443 (556)
. .....+++ .++.++++.. .++.|.++|+.+++.+.++.. ......++++++|+.++++......
T Consensus 125 ~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~---g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~ 200 (328)
T 3dsm_A 125 DMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTI---GIQPTSLVMDKYNKMWTITDGGYEGSPYGY 200 (328)
T ss_dssp TCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEEC---SSCBCCCEECTTSEEEEEBCCBCTTCSSCB
T ss_pred CccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEc---CCCccceEEcCCCCEEEEECCCccCCcccc
Confidence 2 14456666 4444555544 489999999999998888876 4556789999998866655410000
Q ss_pred CCCeEEEEEeC-CcEEEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCCeEEEE
Q psy10778 444 GGSILRLHTIN-AQLITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT-LNTNVALPVIAVT 519 (556)
Q Consensus 444 ~d~~I~iwdi~-g~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~ 519 (556)
..+.|.++|.. ++....+.. ......++++ |++ +.|.++.. .|.+||..+++.... +.........+++
T Consensus 201 ~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~--~d~---~~lyv~~~--~v~~~d~~t~~~~~~~~~~~~~~~p~gi~ 273 (328)
T 3dsm_A 201 EAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLN--GTR---DTLYWINN--DIWRMPVEADRVPVRPFLEFRDTKYYGLT 273 (328)
T ss_dssp CCCEEEEEETTTTEEEEEEECCTTCCCEEEEEC--TTS---CEEEEESS--SEEEEETTCSSCCSSCSBCCCSSCEEEEE
T ss_pred CCceEEEEECCCCeEEEEEecCCCCCceeEEEe--cCC---CEEEEEcc--EEEEEECCCCceeeeeeecCCCCceEEEE
Confidence 02789999997 666666654 3478999999 888 67777665 899999988775321 1111246789999
Q ss_pred Eec-CCCEEEEE----cCCCcEEEEEcCCCCCcCeee
Q psy10778 520 YSC-DSQHLYAS----NTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 520 ~s~-dg~~l~sg----s~Dg~V~vwdl~~~~~~~~~~ 551 (556)
++| ++.+.++. ..++.|.+||.. ++.+.++.
T Consensus 274 vdp~~g~lyva~~~~y~~~~~V~v~d~~-g~~~~~i~ 309 (328)
T 3dsm_A 274 VNPNNGEVYVADAIDYQQQGIVYRYSPQ-GKLIDEFY 309 (328)
T ss_dssp ECTTTCCEEEEECTTSSSEEEEEEECTT-CCEEEEEE
T ss_pred EcCCCCeEEEEcccccccCCEEEEECCC-CCEEEEEE
Confidence 999 55666665 578999999998 66655543
|
| >3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.2e-12 Score=141.39 Aligned_cols=229 Identities=12% Similarity=-0.014 Sum_probs=150.6
Q ss_pred EEecc-CCCeEEEEeCC--C-CCCcceEcCC---CCCceEEEEEcCCCCEEEEEeCC----------CcEEEEEeeeccC
Q psy10778 296 ICWNE-CDNLIRLKMSK--E-LPATPVIRPP---LGATIATATTAPDCHTLWLGLTS----------GNILVYEYELNAS 358 (556)
Q Consensus 296 l~~gs-~Dg~I~lw~~~--~-~~~~~~~~~~---h~~~V~~i~~s~dg~~l~tgs~D----------g~I~vwd~~~~~~ 358 (556)
|++++ .+..|.+++.. + ++...+.... |...+.+++|+|||+.|++++.+ ..|++|++.+...
T Consensus 94 la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 173 (662)
T 3azo_A 94 LVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAA 173 (662)
T ss_dssp EEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTT
T ss_pred EEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCcc
Confidence 55443 36677778776 3 4433222111 56788999999999999999877 5788888875100
Q ss_pred c--ccccccCCCeEee-CCCccEEEEEEccCCCEEEEEcCC--------CcEEEEeCC-CC---eEEEEeCCCCCCCCee
Q psy10778 359 T--NKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSSED--------GTCLLWDIN-TI---GYIREIPCVDPNTPVS 423 (556)
Q Consensus 359 ~--~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~D--------g~I~iwdl~-~~---~~v~~l~~~h~~~~V~ 423 (556)
. + + ...+. .+...+..++|+|||+.|+.++.+ ..|.+||+. ++ +..+.... + ...+.
T Consensus 174 ~~~~-----~-~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~-~-~~~~~ 245 (662)
T 3azo_A 174 ADRS-----A-VRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGG-P-EEAIA 245 (662)
T ss_dssp TCGG-----G-SEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEE-T-TBCEE
T ss_pred ccCC-----c-eeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCC-C-CceEc
Confidence 0 0 1 23444 566788889999999999887754 379999999 56 44444444 4 57899
Q ss_pred EEEEeCCCCeEEEEeecCcCCCC--eEEEEEeC-CcEEEEeecCCC---------eEEEEEeeCCCCCcceEEEEEeCCC
Q psy10778 424 HVTMSETNGEIASVLQTTKTGGS--ILRLHTIN-AQLITSLASELR---------ITSVTFSNAPEGVSQNVIVTGHSDG 491 (556)
Q Consensus 424 ~l~~sp~~~~i~s~s~~~~~~d~--~I~iwdi~-g~~i~~~~~~~~---------i~~i~~s~~pdg~~~~~l~tg~~dg 491 (556)
.++|+|||+.++++. .++ .|.+||+. ++......+... +.+++|+ +++ +++++++. +
T Consensus 246 ~~~~spdg~l~~~~~-----~~~~~~l~~~~~~~~~~~~l~~~~~~~~~p~w~~~~~~~~~~--~~~---~~~~~~~~-~ 314 (662)
T 3azo_A 246 QAEWAPDGSLIVATD-----RTGWWNLHRVDPATGAATQLCRREEEFAGPLWTPGMRWFAPL--ANG---LIAVVHGK-G 314 (662)
T ss_dssp EEEECTTSCEEEEEC-----TTSSCEEEEECTTTCCEEESSCCSSBSSCCCCSTTCCSEEEC--TTS---CEEEEEBS-S
T ss_pred ceEECCCCeEEEEEC-----CCCCeEEEEEECCCCceeecccccccccCccccccCceEeEe--CCC---EEEEEEEc-C
Confidence 999999999555554 566 66666764 554433332221 4678888 788 89999988 9
Q ss_pred eEEEE--eCCCCeEEEEecCCCCCCeEEE-EEecCCCEEEEEcCCC--cEEEEEcCCCC
Q psy10778 492 TIQLW--SGYKLAHLLTLNTNVALPVIAV-TYSCDSQHLYASNTEG--LVIIWESSSHN 545 (556)
Q Consensus 492 ~I~iw--d~~~~~~~~~~~~~h~~~V~~l-~~s~dg~~l~sgs~Dg--~V~vwdl~~~~ 545 (556)
.++|| |+.+++ +..+. .+...+..+ +++.+.-.+++++.+. .|.+||+.+++
T Consensus 315 ~~~l~~~d~~~~~-~~~l~-~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~d~~~g~ 371 (662)
T 3azo_A 315 AAVLGILDPESGE-LVDAA-GPWTEWAATLTVSGTRAVGVAASPRTAYEVVELDTVTGR 371 (662)
T ss_dssp SCEEEEEETTTTE-EEECC-SSCCEEEEEEEEETTEEEEEEEETTEEEEEEEEETTTCC
T ss_pred ccEEEEEECCCCc-EEEec-CCCCeEEEEEecCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 99999 555555 66776 566677776 4443333334445454 45666665654
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.45 E-value=2.3e-11 Score=120.39 Aligned_cols=219 Identities=8% Similarity=-0.045 Sum_probs=154.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-- 372 (556)
++..+..++.|..|+..++ ...+. .+...+.+++++++|+++++...++.|.+|+..++. ......
T Consensus 42 l~~~~~~~~~i~~~~~~~~--~~~~~-~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~---------~~~~~~~~ 109 (296)
T 3e5z_A 42 VIFSDVRQNRTWAWSDDGQ--LSPEM-HPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGE---------WESIADSF 109 (296)
T ss_dssp EEEEEGGGTEEEEEETTSC--EEEEE-SSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCC---------EEEEECEE
T ss_pred EEEEeCCCCEEEEEECCCC--eEEEE-CCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCc---------EEEEeecc
Confidence 5667778899999999876 33443 466779999999999988877777899999975441 111111
Q ss_pred -C-CCccEEEEEEccCCCEEEEE----c-------------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 373 -G-HSACVTDLYLCAGFSVAVSS----S-------------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 373 -~-h~~~V~~l~~s~~~~~l~sg----s-------------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
+ ....+.+++++++|+++++. + ..+.|..++.. ++.. .+.. + ......++|+|+++.
T Consensus 110 ~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~-~~~~-~-~~~~~gi~~s~dg~~ 185 (296)
T 3e5z_A 110 EGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLS-APIR-D-RVKPNGLAFLPSGNL 185 (296)
T ss_dssp TTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEE-EEEC-C-CSSEEEEEECTTSCE
T ss_pred CCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEE-Eeec-C-CCCCccEEECCCCCE
Confidence 1 12346789999999988873 3 13456666655 4443 3333 3 567899999999998
Q ss_pred EEEEeecCcCCCCeEEEEEeC--CcE---EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 434 IASVLQTTKTGGSILRLHTIN--AQL---ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~--g~~---i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
+++.+ .++.|.+|+++ |.+ ...+ .....+.+++++ ++| +++++. ++.|.+||.. ++.+..+
T Consensus 186 lv~~~-----~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~~d--~~G---~l~v~~--~~~v~~~~~~-g~~~~~~ 252 (296)
T 3e5z_A 186 LVSDT-----GDNATHRYCLNARGETEYQGVHFTVEPGKTDGLRVD--AGG---LIWASA--GDGVHVLTPD-GDELGRV 252 (296)
T ss_dssp EEEET-----TTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEEEB--TTS---CEEEEE--TTEEEEECTT-SCEEEEE
T ss_pred EEEeC-----CCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEEEC--CCC---CEEEEc--CCeEEEECCC-CCEEEEE
Confidence 85555 67899999985 554 2222 123456789999 898 666655 7899999985 8888888
Q ss_pred cCCCCCCeEEEEE-ecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 508 NTNVALPVIAVTY-SCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 508 ~~~h~~~V~~l~~-s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
. .+.. +++++| +++++.|++++.+ .+.-++.++.+
T Consensus 253 ~-~~~~-~~~~~f~~~d~~~L~v~t~~-~l~~~~~~~~~ 288 (296)
T 3e5z_A 253 L-TPQT-TSNLCFGGPEGRTLYMTVST-EFWSIETNVRG 288 (296)
T ss_dssp E-CSSC-CCEEEEESTTSCEEEEEETT-EEEEEECSCCB
T ss_pred E-CCCC-ceeEEEECCCCCEEEEEcCC-eEEEEEccccc
Confidence 7 4445 899999 5899989888876 45556665543
|
| >2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-11 Score=123.21 Aligned_cols=222 Identities=10% Similarity=0.038 Sum_probs=152.0
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
+.++.++.|.. +....+. .+...+.+++|+++|++++++..++.|.+|+..++ +.......+...+.
T Consensus 24 ~~~~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~---------~~~~~~~~~~~~~~ 90 (333)
T 2dg1_A 24 ISESELQTITA---EPWLEIS-KKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETK---------EIKRPFVSHKANPA 90 (333)
T ss_dssp CCGGGSCEEEC---EEEEEEE-SSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTC---------CEEEEEECSSSSEE
T ss_pred eecccCccccc---ceeEEEe-ccCccccCcEECCCCCEEEEECCCCEEEEEeCCCC---------cEEEEeeCCCCCcc
Confidence 45667777722 2222232 45567799999999998888888999999987654 21222335667899
Q ss_pred EEEEccCCCEEEEEcCC----CcEEEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecC-cCCCCeEEEEEe
Q psy10778 380 DLYLCAGFSVAVSSSED----GTCLLWDINTIGYIREIPC-VDPNTPVSHVTMSETNGEIASVLQTT-KTGGSILRLHTI 453 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~D----g~I~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~-~~~d~~I~iwdi 453 (556)
++++++++++++++..+ +.|.+||..+++....+.. .+ ...+..++++|++..+++..... ....+.|..+|.
T Consensus 91 ~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~ 169 (333)
T 2dg1_A 91 AIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLST-AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSP 169 (333)
T ss_dssp EEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSS-CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECT
T ss_pred eEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCcc-CCcccceEECCCCCEEEEeccccccCCCceEEEEeC
Confidence 99999999988887776 6899999987765434431 02 46789999999987776654100 001356666666
Q ss_pred CC-cEEEEeecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCC-CeEEEE--------ecCCCCCCeEEEEEec
Q psy10778 454 NA-QLITSLASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYK-LAHLLT--------LNTNVALPVIAVTYSC 522 (556)
Q Consensus 454 ~g-~~i~~~~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~-~~~~~~--------~~~~h~~~V~~l~~s~ 522 (556)
++ +..........+..++|+ ++| +.| ++.+.++.|.+||..+ ++.+.. +. ++ ..+..+++++
T Consensus 170 ~~~~~~~~~~~~~~~~~i~~~--~dg---~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~-~~-~~~~~i~~d~ 242 (333)
T 2dg1_A 170 DFRTVTPIIQNISVANGIALS--TDE---KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFT-GH-EGPDSCCIDS 242 (333)
T ss_dssp TSCCEEEEEEEESSEEEEEEC--TTS---SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECC-SS-SEEEEEEEBT
T ss_pred CCCEEEEeecCCCcccceEEC--CCC---CEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecC-CC-CCCCceEECC
Confidence 64 443333334567899999 888 655 5555688999999853 332211 11 22 4688999999
Q ss_pred CCCEEEEEcCCCcEEEEEcC
Q psy10778 523 DSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~ 542 (556)
+|+++++...++.|.+||..
T Consensus 243 ~G~l~v~~~~~~~v~~~d~~ 262 (333)
T 2dg1_A 243 DDNLYVAMYGQGRVLVFNKR 262 (333)
T ss_dssp TCCEEEEEETTTEEEEECTT
T ss_pred CCCEEEEEcCCCEEEEECCC
Confidence 99988888788999999984
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-12 Score=134.63 Aligned_cols=222 Identities=9% Similarity=-0.019 Sum_probs=145.5
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE--
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD-- 380 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~-- 380 (556)
..|.+|+..+++...... .+......+.|+|||+.|+.++.++.|++|++.++ +.......+......
T Consensus 60 ~~l~~~d~~~~~~~~l~~-~~~~~~~~~~~spdg~~l~~~~~~~~l~~~d~~~~---------~~~~~~~~~~~~~~~g~ 129 (396)
T 3c5m_A 60 RNYYLLNLETQQAVQLTE-GKGDNTFGGFISTDERAFFYVKNELNLMKVDLETL---------EEQVIYTVDEEWKGYGT 129 (396)
T ss_dssp CEEEEEETTTTEEEECCC-SSCBCTTTCEECTTSSEEEEEETTTEEEEEETTTC---------CEEEEEECCTTEEEEEE
T ss_pred ceEEEEECCCCcEEEeec-CCCCccccceECCCCCEEEEEEcCCcEEEEECCCC---------CcEEEEecccccCCCCC
Confidence 478888988775443322 22222334789999999999999999999998754 112222323332222
Q ss_pred -----------------EEEccCCCEEEEE-----cCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEEE
Q psy10778 381 -----------------LYLCAGFSVAVSS-----SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIASV 437 (556)
Q Consensus 381 -----------------l~~s~~~~~l~sg-----s~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s~ 437 (556)
+.|+|+++.++.+ ..+..|.+||+.+++....... ...+..++|+| +++.|+.+
T Consensus 130 ~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~~---~~~~~~~~~sp~dg~~l~~~ 206 (396)
T 3c5m_A 130 WVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQD---TAWLGHPIYRPFDDSTVGFC 206 (396)
T ss_dssp EEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEEE---SSCEEEEEEETTEEEEEEEE
T ss_pred EEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeeccC---CcccccceECCCCCCEEEEE
Confidence 3456777765543 3567899999998876555543 67799999999 78878877
Q ss_pred eecCc-CCCCeEEEEEeCCcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEEec
Q psy10778 438 LQTTK-TGGSILRLHTINAQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 438 s~~~~-~~d~~I~iwdi~g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~ 508 (556)
+.... .....|.+||+++.....+.. ...+..++|+ |+| +.|+.++.+ +.|++||+.+++......
T Consensus 207 ~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~s--pdg---~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 207 HEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWI--PDG---SAMAYVSYFKGQTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp ECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEEC--TTS---SCEEEEEEETTTCCEEEEEECTTTCCEEEEEE
T ss_pred ecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEEC--CCC---CEEEEEecCCCCccceEEEEECCCCCeEEeee
Confidence 63100 001578889987543333322 2257889999 898 666655433 459999998876544332
Q ss_pred CCCCCCeEEEEEec-CCCEEEEEc----------------CCCcEEEEEcCCCCC
Q psy10778 509 TNVALPVIAVTYSC-DSQHLYASN----------------TEGLVIIWESSSHNR 546 (556)
Q Consensus 509 ~~h~~~V~~l~~s~-dg~~l~sgs----------------~Dg~V~vwdl~~~~~ 546 (556)
. . ... +.|+| ||+.+++++ .++.|++||+.+++.
T Consensus 282 -~-~-~~~-~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~ 332 (396)
T 3c5m_A 282 -M-P-PCS-HLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSA 332 (396)
T ss_dssp -C-C-SEE-EEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBC
T ss_pred -C-C-CCC-CCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCce
Confidence 1 1 233 89999 999888754 347899999987654
|
| >3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae} | Back alignment and structure |
|---|
Probab=99.42 E-value=6.3e-12 Score=123.81 Aligned_cols=191 Identities=8% Similarity=0.004 Sum_probs=154.1
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC-ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS-ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI 413 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~-~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l 413 (556)
.++.|++++.|+.|.+||..++ +.+..+..+. ..+.+++++|+|++++ +.++.|..||. +++.+.++
T Consensus 4 ~~~~lv~~~~~~~v~~~d~~tG---------~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~ 71 (276)
T 3no2_A 4 PQHLLVGGSGWNKIAIINKDTK---------EIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNI 71 (276)
T ss_dssp CCEEEEECTTCSEEEEEETTTT---------EEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEE
T ss_pred CCcEEEeeCCCCEEEEEECCCC---------eEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEE
Confidence 4589999999999999998766 4445666655 4788999999999888 35788999999 79999998
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCC-CCeEEEEEeCCcEEEEeecC-------CCeEEEEEeeCCCCCcceEEE
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTG-GSILRLHTINAQLITSLASE-------LRITSVTFSNAPEGVSQNVIV 485 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~-d~~I~iwdi~g~~i~~~~~~-------~~i~~i~~s~~pdg~~~~~l~ 485 (556)
.. +....+.++.+.++|+.+++.+ . ++.+..+|.+|+.+..+... .....++.. ++| ++++
T Consensus 72 ~~-~~~~~~~~~~~~~dG~~lv~~~-----~~~~~v~~vd~~Gk~l~~~~~~~~~~~~~~~~~~v~~~--~~G---~~lv 140 (276)
T 3no2_A 72 AA-PAGCEMQTARILPDGNALVAWC-----GHPSTILEVNMKGEVLSKTEFETGIERPHAQFRQINKN--KKG---NYLV 140 (276)
T ss_dssp EC-CTTCEEEEEEECTTSCEEEEEE-----STTEEEEEECTTSCEEEEEEECCSCSSGGGSCSCCEEC--TTS---CEEE
T ss_pred cC-CCCccccccEECCCCCEEEEec-----CCCCEEEEEeCCCCEEEEEeccCCCCcccccccCceEC--CCC---CEEE
Confidence 86 3135788999999999999887 5 67888888889988877532 133455666 888 8999
Q ss_pred EEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 486 TGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 486 tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+...++.|..||.. |+.+.++.. ...+.++...++|..+++++.+++|..+|..+++.+..+.
T Consensus 141 ~~~~~~~v~~~d~~-G~~~w~~~~--~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~~tG~~~w~~~ 203 (276)
T 3no2_A 141 PLFATSEVREIAPN-GQLLNSVKL--SGTPFSSAFLDNGDCLVACGDAHCFVQLNLESNRIVRRVN 203 (276)
T ss_dssp EETTTTEEEEECTT-SCEEEEEEC--SSCCCEEEECTTSCEEEECBTTSEEEEECTTTCCEEEEEE
T ss_pred EecCCCEEEEECCC-CCEEEEEEC--CCCccceeEcCCCCEEEEeCCCCeEEEEeCcCCcEEEEec
Confidence 99999999999987 999999973 3456778889999999999988899999999877765553
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.42 E-value=1.2e-11 Score=138.12 Aligned_cols=223 Identities=7% Similarity=-0.045 Sum_probs=157.2
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCc----------------EEEEEeeeccCcccccccCC
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGN----------------ILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~----------------I~vwd~~~~~~~~~~~~~~~ 367 (556)
.|++||+.+++...... .+ ..+..++|+|||+.|+.++.++. |++|++.++.. +.
T Consensus 152 ~i~v~d~~tg~~~~~~~-~~-~~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~-------~~ 222 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL-ER-VKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS-------ED 222 (710)
T ss_dssp EEEEEETTTTEEEEEEE-EE-ECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG-------GC
T ss_pred EEEEEECCCCCCCcccc-cC-cccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcc-------cc
Confidence 89999999887655332 12 22668999999999999988766 89999865411 11
Q ss_pred CeEee--CCCccEEEEEEccCCCEEEEEcC-----CCcEEEEeCCC------Ce-EEEEeCCCCCCCCeeEEEEeCCCCe
Q psy10778 368 PTILL--GHSACVTDLYLCAGFSVAVSSSE-----DGTCLLWDINT------IG-YIREIPCVDPNTPVSHVTMSETNGE 433 (556)
Q Consensus 368 ~~~l~--~h~~~V~~l~~s~~~~~l~sgs~-----Dg~I~iwdl~~------~~-~v~~l~~~h~~~~V~~l~~sp~~~~ 433 (556)
..... .|...+..+.|+|+|++|+.++. +..|.+||+.+ +. ..+.+.. + ...+.. .|+++|+.
T Consensus 223 ~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~-~-~~~~~~-~~s~dg~~ 299 (710)
T 2xdw_A 223 ILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID-N-FEGEYD-YVTNEGTV 299 (710)
T ss_dssp EEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC-S-SSSCEE-EEEEETTE
T ss_pred eEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC-C-CCcEEE-EEeccCCE
Confidence 12222 35566889999999998887664 56899999986 43 3555555 4 444444 58899998
Q ss_pred EEEEeecCcCCCCeEEEEEeCC-c---EEEEeecC--CCeEEEEEeeCCCCCcceEEEEEeCCCe--EEEEeCCCCeEEE
Q psy10778 434 IASVLQTTKTGGSILRLHTINA-Q---LITSLASE--LRITSVTFSNAPEGVSQNVIVTGHSDGT--IQLWSGYKLAHLL 505 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~g-~---~i~~~~~~--~~i~~i~~s~~pdg~~~~~l~tg~~dg~--I~iwd~~~~~~~~ 505 (556)
|+..+... .....|.+||+++ . ......+. ..+..++|+ +++ .++++...++. |.+|++.+++.+.
T Consensus 300 l~~~s~~~-~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~~---~lv~~~~~~g~~~l~~~~~~~g~~~~ 373 (710)
T 2xdw_A 300 FTFKTNRH-SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV--RSN---FLVLCYLHDVKNTLQLHDLATGALLK 373 (710)
T ss_dssp EEEEECTT-CTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE--TTT---EEEEEEEETTEEEEEEEETTTCCEEE
T ss_pred EEEEECCC-CCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE--cCC---EEEEEEEECCEEEEEEEECCCCCEEE
Confidence 88876321 1245799999873 2 12223333 367889998 677 78888888885 5667776788778
Q ss_pred EecCCCCCCeEEEEEecCCCEEEEE-c---CCCcEEEEEcCCCC
Q psy10778 506 TLNTNVALPVIAVTYSCDSQHLYAS-N---TEGLVIIWESSSHN 545 (556)
Q Consensus 506 ~~~~~h~~~V~~l~~s~dg~~l~sg-s---~Dg~V~vwdl~~~~ 545 (556)
.+. .+...+..++++|++..++.. + ..+.|+.||+.+++
T Consensus 374 ~l~-~~~~~v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 374 IFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEE 416 (710)
T ss_dssp EEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSS
T ss_pred ecC-CCCceEEEEecCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 887 557788899999998766633 2 35789999998866
|
| >3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.41 E-value=6.1e-11 Score=117.30 Aligned_cols=201 Identities=8% Similarity=-0.035 Sum_probs=146.7
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 323 LGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 323 h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+.....+++|+|+|+ .++++..++.|..|+...+ ...+..+...+.+++++++|+++++...++.|.+
T Consensus 26 ~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~-----------~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~ 94 (296)
T 3e5z_A 26 GFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ-----------LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLER 94 (296)
T ss_dssp CCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC-----------EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEE
T ss_pred CCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC-----------eEEEECCCCCcceeeECCCCcEEEEecCCCeEEE
Confidence 445678999999998 7888888999999997642 2455667788999999999998888888899999
Q ss_pred EeCCCCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEEEeecC------------cCCCCeEEEEEeCCcEEEEeecCCCe
Q psy10778 402 WDINTIGYIREIPCV--DPNTPVSHVTMSETNGEIASVLQTT------------KTGGSILRLHTINAQLITSLASELRI 467 (556)
Q Consensus 402 wdl~~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~------------~~~d~~I~iwdi~g~~i~~~~~~~~i 467 (556)
||..+++........ .....+..++++|+|..+++.+..+ ....+.|..++..++...........
T Consensus 95 ~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~ 174 (296)
T 3e5z_A 95 QREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPDGTLSAPIRDRVKP 174 (296)
T ss_dssp ECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTTSCEEEEECCCSSE
T ss_pred EcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCCCCEEEeecCCCCC
Confidence 999888754433210 1023567899999998777632000 00134566666666655444556678
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeE---EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAH---LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~---~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
..++|+ |+| +.+++.+.++.|.+|++. +++. ...+ ..+...+.+++++++|+++++. ++.|.+|+..
T Consensus 175 ~gi~~s--~dg---~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~-~~~~~~p~~i~~d~~G~l~v~~--~~~v~~~~~~ 245 (296)
T 3e5z_A 175 NGLAFL--PSG---NLLVSDTGDNATHRYCLNARGETEYQGVHF-TVEPGKTDGLRVDAGGLIWASA--GDGVHVLTPD 245 (296)
T ss_dssp EEEEEC--TTS---CEEEEETTTTEEEEEEECSSSCEEEEEEEE-CCSSSCCCSEEEBTTSCEEEEE--TTEEEEECTT
T ss_pred ccEEEC--CCC---CEEEEeCCCCeEEEEEECCCCcCcCCCeEe-eCCCCCCCeEEECCCCCEEEEc--CCeEEEECCC
Confidence 999999 898 777777788999999986 4554 3444 2445667889999999877666 8899999986
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.38 E-value=3.3e-10 Score=122.64 Aligned_cols=226 Identities=9% Similarity=-0.010 Sum_probs=166.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEee--eccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYE--LNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~--~~~~~~~~~~~~~~~~l~ 372 (556)
++++...+++|.++|..+++.+..+..+ ..+..++++|||+++++++.|+.|.+||+. +. +.+..+.
T Consensus 169 ~~V~~~~~~~V~viD~~t~~v~~~i~~g--~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~---------~~v~~i~ 237 (567)
T 1qks_A 169 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEP---------TTVAEIK 237 (567)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSC---------CEEEEEE
T ss_pred EEEEeCCCCeEEEEECCCCeEEEEEeCC--CCccceEECCCCCEEEEEcCCCeEEEEECCCCCC---------cEeEEEe
Confidence 6677788999999999999888777643 356799999999999999999999999984 33 2334554
Q ss_pred CCCccEEEEEEc----cCCCEEEEEcC-CCcEEEEeCCCCeEEEEeCCCC----------CCCCeeEEEEeCCCCeEEEE
Q psy10778 373 GHSACVTDLYLC----AGFSVAVSSSE-DGTCLLWDINTIGYIREIPCVD----------PNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 373 ~h~~~V~~l~~s----~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l~~~h----------~~~~V~~l~~sp~~~~i~s~ 437 (556)
... ....++++ |+|+++++++. ++++.++|..+++.+.++.. . +...+..+..++++..++..
T Consensus 238 ~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~-~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~ 315 (567)
T 1qks_A 238 IGS-EARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST-RGMTYDEQEYHPEPRVAAILASHYRPEFIVN 315 (567)
T ss_dssp CCS-EEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-CEECTTTCCEESCCCEEEEEECSSSSEEEEE
T ss_pred cCC-CCceeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEec-cccccccccccCCCceEEEEEcCCCCEEEEE
Confidence 433 35789999 69998777664 59999999999998887653 1 01257788889887665555
Q ss_pred eecCcCCCCeEEEEEeCC---cEEEEeecCCCeEEEEEeeCCCCCcceEEEEE-eCCCeEEEEeCCCCeEEEEecC-C--
Q psy10778 438 LQTTKTGGSILRLHTINA---QLITSLASELRITSVTFSNAPEGVSQNVIVTG-HSDGTIQLWSGYKLAHLLTLNT-N-- 510 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~g---~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg-~~dg~I~iwd~~~~~~~~~~~~-~-- 510 (556)
.. ..|.|.++|... ..+..+........+.|+ ++| ++++++ ..+++|.++|+.+++.+..+.. +
T Consensus 316 ~~----~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~~--pdg---r~~~va~~~sn~V~ViD~~t~kl~~~i~vgg~~ 386 (567)
T 1qks_A 316 VK----ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD--GSH---RYFITAANARNKLVVIDTKEGKLVAIEDTGGQT 386 (567)
T ss_dssp ET----TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC--TTS---CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSS
T ss_pred ec----CCCeEEEEecCCCccceeeeeeccccccCceEC--CCC---CEEEEEeCCCCeEEEEECCCCcEEEEEeccCcC
Confidence 42 679999999862 233444556678899999 898 666554 4678999999999998887764 2
Q ss_pred -CCCCeEEEEEecCCCEEE-EEc-CCCcEEEEEcCC
Q psy10778 511 -VALPVIAVTYSCDSQHLY-ASN-TEGLVIIWESSS 543 (556)
Q Consensus 511 -h~~~V~~l~~s~dg~~l~-sgs-~Dg~V~vwdl~~ 543 (556)
|.+.-.. -++|++..+. ++. .++.|.++|..+
T Consensus 387 Phpg~g~~-~~~p~~g~v~~t~~~g~~~Vsvid~~~ 421 (567)
T 1qks_A 387 PHPGRGAN-FVHPTFGPVWATSHMGDDSVALIGTDP 421 (567)
T ss_dssp BCCTTCEE-EEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred CCCcccee-eECCCCCcEEEeCCCCCCeEEEecCCC
Confidence 3222222 2588755444 443 468999999987
|
| >3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=99.37 E-value=1.4e-12 Score=133.91 Aligned_cols=202 Identities=8% Similarity=-0.036 Sum_probs=133.1
Q ss_pred eEEEEEcCCCCEEEEEeCC-C--cEEEEEeeeccCcccccccCCCeEeeCCCcc-EEEEEEccCCCEEEEEcCCCcEEEE
Q psy10778 327 IATATTAPDCHTLWLGLTS-G--NILVYEYELNASTNKIEFCKPPTILLGHSAC-VTDLYLCAGFSVAVSSSEDGTCLLW 402 (556)
Q Consensus 327 V~~i~~s~dg~~l~tgs~D-g--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~sgs~Dg~I~iw 402 (556)
+.+++|+|||++|+.+... + .|.+|++.++ +. ..+..+... ...+.|+|+|+.|+.++.++.|.+|
T Consensus 38 ~~~~~~SpdG~~l~~~~~~~g~~~l~~~d~~~~---------~~-~~l~~~~~~~~~~~~~spdg~~l~~~~~~~~l~~~ 107 (396)
T 3c5m_A 38 FYQKCFTQDGKKLLFAGDFDGNRNYYLLNLETQ---------QA-VQLTEGKGDNTFGGFISTDERAFFYVKNELNLMKV 107 (396)
T ss_dssp TTSCCBCTTSCEEEEEECTTSSCEEEEEETTTT---------EE-EECCCSSCBCTTTCEECTTSSEEEEEETTTEEEEE
T ss_pred eecCcCCCCCCEEEEEEecCCCceEEEEECCCC---------cE-EEeecCCCCccccceECCCCCEEEEEEcCCcEEEE
Confidence 6678899999998877543 3 5666676543 11 223333333 3347899999999999999999999
Q ss_pred eCCCCeEEEEeCCCCCCCCeeE-------------------EEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee
Q psy10778 403 DINTIGYIREIPCVDPNTPVSH-------------------VTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA 462 (556)
Q Consensus 403 dl~~~~~v~~l~~~h~~~~V~~-------------------l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~ 462 (556)
|+.+++....... + ...... ++++|+++.++.........+..|++||+. ++......
T Consensus 108 d~~~~~~~~~~~~-~-~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~~~~~l~~~d~~~g~~~~~~~ 185 (396)
T 3c5m_A 108 DLETLEEQVIYTV-D-EEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTNPTCRLIKVDIETGELEVIHQ 185 (396)
T ss_dssp ETTTCCEEEEEEC-C-TTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTCCCEEEEEEETTTCCEEEEEE
T ss_pred ECCCCCcEEEEec-c-cccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCCCcceEEEEECCCCcEEeecc
Confidence 9998876665554 3 332222 245666665554320000156789999997 55555556
Q ss_pred cCCCeEEEEEeeCC-CCCcceEEEEEeCC------CeEEEEeCCCCeEEEEecCCC-CCCeEEEEEecCCCEEEEEcCC-
Q psy10778 463 SELRITSVTFSNAP-EGVSQNVIVTGHSD------GTIQLWSGYKLAHLLTLNTNV-ALPVIAVTYSCDSQHLYASNTE- 533 (556)
Q Consensus 463 ~~~~i~~i~~s~~p-dg~~~~~l~tg~~d------g~I~iwd~~~~~~~~~~~~~h-~~~V~~l~~s~dg~~l~sgs~D- 533 (556)
+...+..+.|+ | ++ ..|+..+.+ ..|.+||+..++. ..+.... ...+..++|+|||+.|+.++.+
T Consensus 186 ~~~~~~~~~~s--p~dg---~~l~~~~~~~~~~~~~~l~~~d~~~~~~-~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~ 259 (396)
T 3c5m_A 186 DTAWLGHPIYR--PFDD---STVGFCHEGPHDLVDARMWLVNEDGSNV-RKIKEHAEGESCTHEFWIPDGSAMAYVSYFK 259 (396)
T ss_dssp ESSCEEEEEEE--TTEE---EEEEEEECSCSSSCSCCCEEEETTSCCC-EESSCCCTTEEEEEEEECTTSSCEEEEEEET
T ss_pred CCcccccceEC--CCCC---CEEEEEecCCCCCCCceEEEEECCCCce-eEeeccCCCccccceEECCCCCEEEEEecCC
Confidence 67789999999 8 67 666655543 4688899865543 3343111 2358889999999987766543
Q ss_pred ----CcEEEEEcCCCCC
Q psy10778 534 ----GLVIIWESSSHNR 546 (556)
Q Consensus 534 ----g~V~vwdl~~~~~ 546 (556)
+.|++||+.+++.
T Consensus 260 ~~~~~~l~~~d~~~g~~ 276 (396)
T 3c5m_A 260 GQTDRVIYKANPETLEN 276 (396)
T ss_dssp TTCCEEEEEECTTTCCE
T ss_pred CCccceEEEEECCCCCe
Confidence 4499999987653
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.37 E-value=2e-10 Score=113.95 Aligned_cols=224 Identities=9% Similarity=0.025 Sum_probs=152.6
Q ss_pred ccCCCeEEEEeCCCCCCcceEc---CCCCCceEEEEEcCC-CCEEEEEeCCCcEEEEEeeeccCcccccccCC-CeEee-
Q psy10778 299 NECDNLIRLKMSKELPATPVIR---PPLGATIATATTAPD-CHTLWLGLTSGNILVYEYELNASTNKIEFCKP-PTILL- 372 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~---~~h~~~V~~i~~s~d-g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~-~~~l~- 372 (556)
+..++.|.+|+..+++...... .++...+.+++++++ |+++++. ..+.|.+|+.. +. .. .. .....
T Consensus 42 ~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~-~~~~l~~~d~~-g~----~~--~~~~~~~~~ 113 (314)
T 1pjx_A 42 GKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVAD-MRLGLLVVQTD-GT----FE--EIAKKDSEG 113 (314)
T ss_dssp TEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEE-TTTEEEEEETT-SC----EE--ECCSBCTTS
T ss_pred CCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEE-CCCCEEEEeCC-CC----EE--EEEeccCCC
Confidence 4667889999987766543321 124467899999999 6555544 44578888866 31 00 00 00001
Q ss_pred CCCccEEEEEEccCCCEEEEEcCC---------------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe----CCCCe
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSED---------------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMS----ETNGE 433 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~D---------------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s----p~~~~ 433 (556)
.....+.+++++++|++.++...+ +.|..+|.. ++....... ......++++ ++++.
T Consensus 114 ~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~---~~~~~~i~~~~~~d~dg~~ 189 (314)
T 1pjx_A 114 RRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQ 189 (314)
T ss_dssp CBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEE
T ss_pred ccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC---CCCcceEEEecccCCCCCE
Confidence 122457899999999988877655 567778776 554443333 3557889999 99876
Q ss_pred EEEEeecCcCCCCeEEEEEeC--CcE-----EEEeecC--CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE
Q psy10778 434 IASVLQTTKTGGSILRLHTIN--AQL-----ITSLASE--LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL 504 (556)
Q Consensus 434 i~s~s~~~~~~d~~I~iwdi~--g~~-----i~~~~~~--~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~ 504 (556)
++.+.. .++.|.+||.+ ++. ...+... ..+..++++ ++| +++++...++.|.+||..+++.+
T Consensus 190 l~v~~~----~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d--~~G---~l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 190 LIVAET----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDN---NLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp EEEEET----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTC---CEEEEEETTTEEEEECTTCBSCS
T ss_pred EEEEEC----CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC--CCC---CEEEEEcCCCEEEEEcCCCCcEe
Confidence 665542 57899999975 432 1222212 567889999 888 78888878899999998877776
Q ss_pred EEecCCCCCCeEEEEEecCCCEE-EEEcCCCcEEEEEcCCC
Q psy10778 505 LTLNTNVALPVIAVTYSCDSQHL-YASNTEGLVIIWESSSH 544 (556)
Q Consensus 505 ~~~~~~h~~~V~~l~~s~dg~~l-~sgs~Dg~V~vwdl~~~ 544 (556)
..+. .+...+.+++++++++.| ++...++.|..|++...
T Consensus 261 ~~~~-~~~~~~~~i~~~~dg~~l~v~~~~~~~l~~~~~~~~ 300 (314)
T 1pjx_A 261 MRIR-CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp EEEE-CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred EEEe-CCCCCceeEEECCCCCEEEEEeCCCCeEEEEeCCCC
Confidence 6665 445789999999999955 45556789999998763
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.1e-09 Score=107.36 Aligned_cols=224 Identities=9% Similarity=-0.086 Sum_probs=159.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|.+|+.. ++........+...+.+++++++|...++...++.|..|+.... .. ...+...
T Consensus 28 l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~-----~~----~~~~~~~ 97 (299)
T 2z2n_A 28 VWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGI-----IK----EYTLPNP 97 (299)
T ss_dssp EEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSC-----EE----EEECSST
T ss_pred EEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCc-----EE----EEeCCCc
Confidence 33334456788888887 54433322234567999999999998888777888988886411 00 0111234
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...+.++++.+++.+.++...++.|.+||. +++.... ... . ...+..+++++++..+++.. .++.|..||.
T Consensus 98 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~~ 169 (299)
T 2z2n_A 98 DSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPN-K-GSYPSFITLGSDNALWFTEN-----QNNAIGRITE 169 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSCEEEEET-----TTTEEEEECT
T ss_pred CCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCC-C-CCCCceEEEcCCCCEEEEeC-----CCCEEEEEcC
Confidence 567899999999998888888899999998 5554432 332 3 46789999999987776665 5789999999
Q ss_pred CCcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 454 NAQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 454 ~g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+++..... .....+.+++++ ++| ++.++...++.|.+||. +++........+...+.+++++++|++.++..
T Consensus 170 ~g~~~~~~~~~~~~~~~~i~~~--~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~ 243 (299)
T 2z2n_A 170 SGDITEFKIPTPASGPVGITKG--NDD---ALWFVEIIGNKIGRITT-SGEITEFKIPTPNARPHAITAGAGIDLWFTEW 243 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEEC--TTS---SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred CCcEEEeeCCCCCCcceeEEEC--CCC---CEEEEccCCceEEEECC-CCcEEEEECCCCCCCceeEEECCCCCEEEecc
Confidence 76654431 134568899998 888 77777767889999998 66644321213456799999999999777776
Q ss_pred CCCcEEEEEcC
Q psy10778 532 TEGLVIIWESS 542 (556)
Q Consensus 532 ~Dg~V~vwdl~ 542 (556)
.++.|..|+..
T Consensus 244 ~~~~i~~~d~~ 254 (299)
T 2z2n_A 244 GANKIGRLTSN 254 (299)
T ss_dssp TTTEEEEEETT
T ss_pred CCceEEEECCC
Confidence 78899999983
|
| >2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A* | Back alignment and structure |
|---|
Probab=99.35 E-value=5e-11 Score=133.24 Aligned_cols=207 Identities=8% Similarity=-0.085 Sum_probs=137.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED 396 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D 396 (556)
+|...+..++|||||++||.++.++ +|++||+.++ +...... ....+..++|+|||+.|+.++.+
T Consensus 122 ~~~~~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg---------~~~~~~~-~~~~~~~~~wspDg~~l~~~~~~ 191 (710)
T 2xdw_A 122 DGTVALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGA---------KELPDVL-ERVKFSCMAWTHDGKGMFYNAYP 191 (710)
T ss_dssp TSCEEEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTT---------EEEEEEE-EEECSCCEEECTTSSEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---------CCCcccc-cCcccceEEEEeCCCEEEEEEEC
Confidence 3444688999999999999876544 8999999876 1112111 11236679999999999988887
Q ss_pred Cc----------------EEEEeCCCCeE--EEEeCCC-CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC--
Q psy10778 397 GT----------------CLLWDINTIGY--IREIPCV-DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-- 455 (556)
Q Consensus 397 g~----------------I~iwdl~~~~~--v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-- 455 (556)
+. |.+|++.+++. ...+... + ...+..++|+|||++|+.++......+..|++||+.+
T Consensus 192 ~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~-~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~ 270 (710)
T 2xdw_A 192 QQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDE-PKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQES 270 (710)
T ss_dssp CCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSS
T ss_pred CccccccccccccCCCCEEEEEECCCCcccceEEeccCCC-CeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccc
Confidence 66 99999988752 2222220 3 4457899999999999988743211267899999864
Q ss_pred ----c--EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeC----CCeEEEEeCCCCe--EEEEecCCCC-CCeEEEEEe
Q psy10778 456 ----Q--LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHS----DGTIQLWSGYKLA--HLLTLNTNVA-LPVIAVTYS 521 (556)
Q Consensus 456 ----~--~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~----dg~I~iwd~~~~~--~~~~~~~~h~-~~V~~l~~s 521 (556)
. ....+ .+...+.. .|+ ++| ..|+..+. ++.|.+||+.+++ ....+...+. ..+.+++|+
T Consensus 271 ~~~~~~~~~~~l~~~~~~~~~-~~s--~dg---~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~~~~~~~ 344 (710)
T 2xdw_A 271 NGITGILKWVKLIDNFEGEYD-YVT--NEG---TVFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV 344 (710)
T ss_dssp SSSCSSCCCEEEECSSSSCEE-EEE--EET---TEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCEEEEEEEE
T ss_pred cccCCccceEEeeCCCCcEEE-EEe--ccC---CEEEEEECCCCCCCEEEEEeCCCCCcccceeccCCCCCCeEEEEEEE
Confidence 2 23333 34444444 477 666 45544443 3479999997764 2234432222 368889999
Q ss_pred cCCCEEEEEcCCCc--EEEEEcCCCC
Q psy10778 522 CDSQHLYASNTEGL--VIIWESSSHN 545 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~--V~vwdl~~~~ 545 (556)
+++.++++...||. |.+|++.+++
T Consensus 345 ~~~~lv~~~~~~g~~~l~~~~~~~g~ 370 (710)
T 2xdw_A 345 RSNFLVLCYLHDVKNTLQLHDLATGA 370 (710)
T ss_dssp TTTEEEEEEEETTEEEEEEEETTTCC
T ss_pred cCCEEEEEEEECCEEEEEEEECCCCC
Confidence 88888888888884 5667775554
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.6e-09 Score=111.37 Aligned_cols=222 Identities=9% Similarity=-0.051 Sum_probs=143.1
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.|.++|..+++.+..+..+. .+ .++++|||+.++++. .++.|.+||..+. +.+..+.-
T Consensus 48 ~v~v~D~~t~~~~~~i~~g~-~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~---------~~~~~i~~ 115 (373)
T 2mad_H 48 QQWVLDAGSGSILGHVNGGF-LP--NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTF---------LPIADIEL 115 (373)
T ss_pred EEEEEECCCCeEEEEecCCC-CC--CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCC---------cEEEEEEC
Confidence 88999999888776665432 23 899999999999886 3678999998764 22222221
Q ss_pred C-------CccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEE-eCCCCCCCCee--------EEEEeCCCCeEE
Q psy10778 374 H-------SACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIRE-IPCVDPNTPVS--------HVTMSETNGEIA 435 (556)
Q Consensus 374 h-------~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~--------~l~~sp~~~~i~ 435 (556)
. ...-..++++|+|++|+.++. ++.|.++| .+++.+.+ +.. ...+. -++.++++..++
T Consensus 116 ~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~---~~~~~~~~~~~~~~~~~~~dg~~~~ 191 (373)
T 2mad_H 116 PDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSS---PTCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred CCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCC---CceEEEEeCCCceEEEEcCCCCEEE
Confidence 1 123457999999999988764 57899999 99998888 654 22111 112222222111
Q ss_pred EEeecC---------------------------------cCCCCeEEEEEeCCc---EEEEeec-----------CCCeE
Q psy10778 436 SVLQTT---------------------------------KTGGSILRLHTINAQ---LITSLAS-----------ELRIT 468 (556)
Q Consensus 436 s~s~~~---------------------------------~~~d~~I~iwdi~g~---~i~~~~~-----------~~~i~ 468 (556)
... .+ ....+.+.+.|+.+. .+..+.. .....
T Consensus 192 vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~ 270 (373)
T 2mad_H 192 TDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQ 270 (373)
T ss_pred EEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceE
Confidence 100 00 002234455555321 1111110 12233
Q ss_pred EEEEeeCCCCCcceEEEEEeC----------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-EEEEEc-CCCcE
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHS----------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-HLYASN-TEGLV 536 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs-~Dg~V 536 (556)
.++++ +++ +.+.++.. ++.|.++|..+++.+.++.. .....+++|+|||+ .++++. .++.|
T Consensus 271 ~~~~s--~d~---~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~--g~~p~~i~~s~Dg~~~l~v~~~~~~~V 343 (373)
T 2mad_H 271 QVAYL--KSS---DGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL--GHDVDAISVAQDGGPDLYALSAGTEVL 343 (373)
T ss_pred eEEEC--CCC---CEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC--CCCcCeEEECCCCCeEEEEEcCCCCeE
Confidence 36677 777 55555432 35899999999999999973 34689999999999 788877 58999
Q ss_pred EEEEcCCCCCcCe
Q psy10778 537 IIWESSSHNRTPK 549 (556)
Q Consensus 537 ~vwdl~~~~~~~~ 549 (556)
.++|+.+.+.+.+
T Consensus 344 ~ViD~~t~~vv~~ 356 (373)
T 2mad_H 344 HIYDAGAGDQDQS 356 (373)
T ss_pred EEEECCCCCEEee
Confidence 9999999877655
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.31 E-value=7.2e-11 Score=131.62 Aligned_cols=227 Identities=9% Similarity=-0.068 Sum_probs=153.4
Q ss_pred eccCCCeEEEEeCCCCCCc-ceEcCCCCCce--EEEEEcCCCCEEEEEeCCCc-------------EEEEEeeeccCccc
Q psy10778 298 WNECDNLIRLKMSKELPAT-PVIRPPLGATI--ATATTAPDCHTLWLGLTSGN-------------ILVYEYELNASTNK 361 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~-~~~~~~h~~~V--~~i~~s~dg~~l~tgs~Dg~-------------I~vwd~~~~~~~~~ 361 (556)
.|+.+..|++||+.+++.. .. +...+ ..++|+|||+.|+.++.|.. |++|++.++....
T Consensus 142 ~G~~~~~i~v~dl~tg~~~~~~----~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~- 216 (695)
T 2bkl_A 142 NAADEAVLHVIDVDSGEWSKVD----VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKD- 216 (695)
T ss_dssp TTCSCCEEEEEETTTCCBCSSC----CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGC-
T ss_pred CCCceEEEEEEECCCCCCcCCc----ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhc-
Confidence 4566789999999988764 21 21222 67899999999999988776 9999987652111
Q ss_pred ccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC----cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEE
Q psy10778 362 IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG----TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 362 ~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg----~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
..+.....|...+.++.|+|+|++|+.++.++ .|.+||..+++.. .+.. + ...+....+ ++++ ++..
T Consensus 217 ----~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~-~l~~-~-~~~~~~~~~-~~g~-l~~~ 287 (695)
T 2bkl_A 217 ----TVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFR-LLVK-G-VGAKYEVHA-WKDR-FYVL 287 (695)
T ss_dssp ----EEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCE-EEEE-C-SSCCEEEEE-ETTE-EEEE
T ss_pred ----eEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceE-Eeec-C-CCceEEEEe-cCCc-EEEE
Confidence 11122334566889999999999888777665 6777776655543 3333 3 445566656 5666 6555
Q ss_pred eecCcCCCCeEEEEEeC-CcE---EEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCC
Q psy10778 438 LQTTKTGGSILRLHTIN-AQL---ITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTN 510 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~~---i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~ 510 (556)
+.. ...++.|.+||++ +.. ...+.+ ...+..++++ ++ .++++...|+..++|.+. +++....+...
T Consensus 288 s~~-~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~l~~~~~~---~~---~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~ 360 (695)
T 2bkl_A 288 TDE-GAPRQRVFEVDPAKPARASWKEIVPEDSSASLLSVSIV---GG---HLSLEYLKDATSEVRVATLKGKPVRTVQLP 360 (695)
T ss_dssp ECT-TCTTCEEEEEBTTBCSGGGCEEEECCCSSCEEEEEEEE---TT---EEEEEEEETTEEEEEEEETTCCEEEECCCS
T ss_pred ECC-CCCCCEEEEEeCCCCCccCCeEEecCCCCCeEEEEEEE---CC---EEEEEEEECCEEEEEEEeCCCCeeEEecCC
Confidence 421 1135889999996 431 333333 3457888887 44 788999999988888654 46666766522
Q ss_pred CCCCeEEEEEecCCCEEEE----EcCCCcEEEEEcCCCC
Q psy10778 511 VALPVIAVTYSCDSQHLYA----SNTEGLVIIWESSSHN 545 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~s----gs~Dg~V~vwdl~~~~ 545 (556)
....+..+++++++..++. ....+.|++||+.+++
T Consensus 361 ~~~~v~~~~~s~d~~~l~~~~ss~~~P~~v~~~d~~~g~ 399 (695)
T 2bkl_A 361 GVGAASNLMGLEDLDDAYYVFTSFTTPRQIYKTSVSTGK 399 (695)
T ss_dssp SSSEECCCBSCTTCSEEEEEEEETTEEEEEEEEETTTCC
T ss_pred CCeEEEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 3567788899999977763 2345789999998865
|
| >2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ... | Back alignment and structure |
|---|
Probab=99.30 E-value=9e-11 Score=120.17 Aligned_cols=207 Identities=12% Similarity=0.024 Sum_probs=133.3
Q ss_pred CCCeEEEEeCCCCCCcceEcCC-----CCCceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCCeE-ee
Q psy10778 301 CDNLIRLKMSKELPATPVIRPP-----LGATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPPTI-LL 372 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~-----h~~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~~~-l~ 372 (556)
.++.|.+||..+.+....+... +......++++|||++|+++.. +++|.+||+.++. .+.. +.
T Consensus 79 ~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~---------~~~~~i~ 149 (361)
T 2oiz_A 79 RSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGD---------YVEDVTA 149 (361)
T ss_dssp EEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTE---------EEEEEGG
T ss_pred CCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCc---------EEEEEec
Confidence 5788999999888776666532 2345678999999999999874 5899999987652 1122 11
Q ss_pred C--------------------CCccEEEEEEccCC---------------------------CEEEEEcCCCcEEEEeCC
Q psy10778 373 G--------------------HSACVTDLYLCAGF---------------------------SVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 373 ~--------------------h~~~V~~l~~s~~~---------------------------~~l~sgs~Dg~I~iwdl~ 405 (556)
. ..+.+..+.+..++ ..++..+.++.+.++|+.
T Consensus 150 ~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~v~v~d~~ 229 (361)
T 2oiz_A 150 AAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDKAHFVSYYGNVYSADFS 229 (361)
T ss_dssp GTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSEEEEEBTTSEEEEEECS
T ss_pred CCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCEEEEEeCCCeEEEEEec
Confidence 0 11111112221111 112222334445555554
Q ss_pred CCe--EEEEeCCCCC---------CCCeeEEEEeCCCCeEEEEee-cCc-----CCCCeEEEEEeC-CcEEEEeecCCCe
Q psy10778 406 TIG--YIREIPCVDP---------NTPVSHVTMSETNGEIASVLQ-TTK-----TGGSILRLHTIN-AQLITSLASELRI 467 (556)
Q Consensus 406 ~~~--~v~~l~~~h~---------~~~V~~l~~sp~~~~i~s~s~-~~~-----~~d~~I~iwdi~-g~~i~~~~~~~~i 467 (556)
... .+..+.. .. ......++++|+++.++++.. ++. ...+.|.+||+. ++.+.++.... +
T Consensus 230 ~~~~~~~~~~~~-~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~~t~~~v~~i~~~~-p 307 (361)
T 2oiz_A 230 GDEVKVDGPWSL-LNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDTKTKQRVARIPGRD-A 307 (361)
T ss_dssp SSSCEEEEEEES-CCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEETTTTEEEEEEECTT-C
T ss_pred CCCceecccccc-cCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEECCCCcEEEEEecCC-e
Confidence 322 1111111 00 011123789999888887652 110 014589999997 78888887666 9
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecCCCCCCeEEEEEecCCC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
.+++|+ |+| ++|++++. +.|.+||..++ +.+.++. .+......++++|+|+
T Consensus 308 ~~ia~s--pdg---~~l~v~n~-~~v~v~D~~t~~l~~~~~i~-~~G~~P~~~~~~p~G~ 360 (361)
T 2oiz_A 308 LSMTID--QQR---NLMLTLDG-GNVNVYDISQPEPKLLRTIE-GAAEASLQVQFHPVGG 360 (361)
T ss_dssp CEEEEE--TTT---TEEEEECS-SCEEEEECSSSSCEEEEEET-TSCSSEEEEEECCCSC
T ss_pred eEEEEC--CCC---CEEEEeCC-CeEEEEECCCCcceeeEEec-cCCCCcEEEEecCCCC
Confidence 999999 999 78888886 99999999999 9999985 4567789999999985
|
| >2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.7e-10 Score=128.60 Aligned_cols=201 Identities=7% Similarity=-0.074 Sum_probs=135.0
Q ss_pred CCCCceEEEEEcCCCCEEEE-----EeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC
Q psy10778 322 PLGATIATATTAPDCHTLWL-----GLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED 396 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~t-----gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D 396 (556)
+|...+.+++|||||++||. |+.+.+|++||+.++... . ...+... ....++|+|||+.|+.++.|
T Consensus 118 ~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~------~-~~~~~~~--~~~~~~wspDg~~l~~~~~d 188 (695)
T 2bkl_A 118 DGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWS------K-VDVIEGG--KYATPKWTPDSKGFYYEWLP 188 (695)
T ss_dssp SSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBC------S-SCCBSCC--TTCCCEECTTSSEEEEEECC
T ss_pred CCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCc------C-CcccCcc--cccceEEecCCCEEEEEEec
Confidence 45557899999999999984 344568999999876210 0 0111111 12578999999999999887
Q ss_pred Cc-------------EEEEeCCCCe----EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEE
Q psy10778 397 GT-------------CLLWDINTIG----YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLI 458 (556)
Q Consensus 397 g~-------------I~iwdl~~~~----~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i 458 (556)
.. |++|++.+++ .+..... + ...+..++|+|+|++|+.++.... ....|++++.. ++..
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~-~-~~~~~~~~~SpDG~~l~~~~~~~~-~~~~l~~~~~~~~~~~ 265 (695)
T 2bkl_A 189 TDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTG-D-PTTFLQSDLSRDGKYLFVYILRGW-SENDVYWKRPGEKDFR 265 (695)
T ss_dssp CCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCC-C-TTCEEEEEECTTSCCEEEEEEETT-TEEEEEEECTTCSSCE
T ss_pred CCCCCccccCCCCCEEEEEECCCCchhceEEEecCC-C-CEEEEEEEECCCCCEEEEEEeCCC-CceEEEEEcCCCCceE
Confidence 76 9999998875 3333333 3 457889999999999988873210 12267777664 4444
Q ss_pred EEeecCCCeEEEEEeeCCCCCcceEEEEEe---CCCeEEEEeCCCCeE---EEEecCCC-CCCeEEEEEecCCCEEEEEc
Q psy10778 459 TSLASELRITSVTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYKLAH---LLTLNTNV-ALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~~~~---~~~~~~~h-~~~V~~l~~s~dg~~l~sgs 531 (556)
....+...+....+ ++| .+++.+. .++.|.+||+.+++. ...+. .+ ...+.+++++ ++.++++..
T Consensus 266 ~l~~~~~~~~~~~~---~~g---~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~~-~~~~~~l~~~~~~-~~~lv~~~~ 337 (695)
T 2bkl_A 266 LLVKGVGAKYEVHA---WKD---RFYVLTDEGAPRQRVFEVDPAKPARASWKEIVP-EDSSASLLSVSIV-GGHLSLEYL 337 (695)
T ss_dssp EEEECSSCCEEEEE---ETT---EEEEEECTTCTTCEEEEEBTTBCSGGGCEEEEC-CCSSCEEEEEEEE-TTEEEEEEE
T ss_pred EeecCCCceEEEEe---cCC---cEEEEECCCCCCCEEEEEeCCCCCccCCeEEec-CCCCCeEEEEEEE-CCEEEEEEE
Confidence 43444555555555 466 6333333 258999999977653 33333 23 4568889998 678888899
Q ss_pred CCCcEEEEEcC
Q psy10778 532 TEGLVIIWESS 542 (556)
Q Consensus 532 ~Dg~V~vwdl~ 542 (556)
.||..++|.+.
T Consensus 338 ~dg~~~l~~~~ 348 (695)
T 2bkl_A 338 KDATSEVRVAT 348 (695)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 99988888665
|
| >2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A* | Back alignment and structure |
|---|
Probab=99.29 E-value=9.3e-09 Score=100.76 Aligned_cols=223 Identities=9% Similarity=-0.036 Sum_probs=154.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|..|+.. ++............+.++++.++|+++++...++.|.+|+. .+. .. ......+
T Consensus 70 l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~----~~----~~~~~~~ 139 (299)
T 2z2n_A 70 VWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGK----IR----EYELPNK 139 (299)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCC----EE----EEECSST
T ss_pred EEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCC----EE----EecCCCC
Confidence 44445557889999876 33222221124567899999999988888777889999886 320 00 0112234
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...+.++++.+++.+.++...++.|..||. +++.... +.. . ...+..+++++++...++.. .++.|..||.
T Consensus 140 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~~~~g~l~v~~~-----~~~~i~~~~~ 211 (299)
T 2z2n_A 140 GSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPT-P-ASGPVGITKGNDDALWFVEI-----IGNKIGRITT 211 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEET-----TTTEEEEECT
T ss_pred CCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCC-C-CCcceeEEECCCCCEEEEcc-----CCceEEEECC
Confidence 567899999999998888888899999999 6665443 333 3 46688999999988666554 5789999999
Q ss_pred CCcEEEEe-e-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec-CCCCCCeEEEEEecCCCEEEEE
Q psy10778 454 NAQLITSL-A-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-TNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 454 ~g~~i~~~-~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~-~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+++..... . ....+.+++++ ++| ++.++...++.|..||. +++. ..+. ..+...+.++++ +++++.++.
T Consensus 212 ~g~~~~~~~~~~~~~~~~i~~~--~~g---~l~v~~~~~~~i~~~d~-~g~~-~~~~~~~~~~~~~~i~~-~~g~l~v~~ 283 (299)
T 2z2n_A 212 SGEITEFKIPTPNARPHAITAG--AGI---DLWFTEWGANKIGRLTS-NNII-EEYPIQIKSAEPHGICF-DGETIWFAM 283 (299)
T ss_dssp TCCEEEEECSSTTCCEEEEEEC--STT---CEEEEETTTTEEEEEET-TTEE-EEEECSSSSCCEEEEEE-CSSCEEEEE
T ss_pred CCcEEEEECCCCCCCceeEEEC--CCC---CEEEeccCCceEEEECC-CCce-EEEeCCCCCCccceEEe-cCCCEEEEe
Confidence 76643321 1 33678999999 888 76666667899999998 5543 3332 134567999999 888877765
Q ss_pred cCCCcEEEEEcCCC
Q psy10778 531 NTEGLVIIWESSSH 544 (556)
Q Consensus 531 s~Dg~V~vwdl~~~ 544 (556)
. .+.+..++.+++
T Consensus 284 ~-~~~l~~~~~~~~ 296 (299)
T 2z2n_A 284 E-CDKIGKLTLIKD 296 (299)
T ss_dssp T-TTEEEEEEEC--
T ss_pred c-CCcEEEEEcCcc
Confidence 5 677888887664
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.6e-09 Score=112.74 Aligned_cols=225 Identities=10% Similarity=-0.041 Sum_probs=154.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccCCCeEe-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCKPPTIL- 371 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l- 371 (556)
++++...++.|++|+.+++........ ..... ++|+++++.|+++..++ .|.+++.... .....+
T Consensus 144 lyv~d~~~~~I~~id~~~g~~~~~~~~--~~~~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~---------~~~~~~g 211 (409)
T 3hrp_A 144 VLAYQRDDPRVRLISVDDNKVTTVHPG--FKGGK-PAVTKDKQRVYSIGWEGTHTVYVYMKASG---------WAPTRIG 211 (409)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEET--CCBCB-CEECTTSSEEEEEBSSTTCEEEEEEGGGT---------TCEEEEE
T ss_pred EEEEecCCCcEEEEECCCCEEEEeecc--CCCCc-eeEecCCCcEEEEecCCCceEEEEEcCCC---------ceeEEee
Confidence 566666778999999987765555442 22233 89999999999998876 5666665433 111222
Q ss_pred ---eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE----eCCCCCCCCe--eEEEEeCCCCeEEEEeecCc
Q psy10778 372 ---LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE----IPCVDPNTPV--SHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 372 ---~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~----l~~~h~~~~V--~~l~~sp~~~~i~s~s~~~~ 442 (556)
......+.+++++|++..|+.+..++.|..||..++..... ... . ...- ..++++|+++.|..+..
T Consensus 212 ~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~~~~~~~g-~-~~~~P~~~ia~~p~~g~lyv~d~--- 286 (409)
T 3hrp_A 212 QLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLIKQLELSG-S-LGTNPGPYLIYYFVDSNFYMSDQ--- 286 (409)
T ss_dssp ECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEEEECCCCS-C-CCCSSCCEEEEETTTTEEEEEET---
T ss_pred eccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEEecccccC-C-CCCCccccEEEeCCCCEEEEEeC---
Confidence 21446678899999555555577789999999987653322 222 1 1222 39999997666655542
Q ss_pred CCCCeEEEEEeCCcEEEEeecC---------------CCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEE
Q psy10778 443 TGGSILRLHTINAQLITSLASE---------------LRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 443 ~~d~~I~iwdi~g~~i~~~~~~---------------~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~ 506 (556)
..+.|+.|+.++......... .....++++ ++| +++++-. .++.|+.|++.+++....
T Consensus 287 -~~~~I~~~~~~g~~~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d--~dG---~lyvad~~~~~~I~~~~~~~G~v~~~ 360 (409)
T 3hrp_A 287 -NLSSVYKITPDGECEWFCGSATQKTVQDGLREEALFAQPNGMTVD--EDG---NFYIVDGFKGYCLRKLDILDGYVSTV 360 (409)
T ss_dssp -TTTEEEEECTTCCEEEEEECTTCCSCBCEEGGGCBCSSEEEEEEC--TTC---CEEEEETTTTCEEEEEETTTTEEEEE
T ss_pred -CCCEEEEEecCCCEEEEEeCCCCCCcCCCcccccEeCCCeEEEEe--CCC---CEEEEeCCCCCEEEEEECCCCEEEEE
Confidence 678999999987744333221 347899999 899 8888877 899999999877764433
Q ss_pred ecCC-------------CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 507 LNTN-------------VALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 507 ~~~~-------------h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.... .-....+++++++|.++++...+++|+.++++
T Consensus 361 ~g~~~~~g~~~g~~~~~~~~~P~giavd~~g~lyVad~~n~~Ir~i~~e 409 (409)
T 3hrp_A 361 AGQVDVASQIDGTPLEATFNYPYDICYDGEGGYWIAEAWGKAIRKYAVE 409 (409)
T ss_dssp EECTTCBSCCCBSTTTCCBSSEEEEEECSSSEEEEEESTTCEEEEEEEC
T ss_pred eCCCCCCCcCCCChhceEeCCceEEEEcCCCCEEEEECCCCeEEEEEeC
Confidence 3210 02458999999999888888888999988763
|
| >1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=6e-10 Score=120.65 Aligned_cols=194 Identities=11% Similarity=-0.013 Sum_probs=148.0
Q ss_pred CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC--CCeEEE
Q psy10778 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN--TIGYIR 411 (556)
Q Consensus 334 ~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~--~~~~v~ 411 (556)
+.+..+++...+++|.++|..++ +.+..+... ..+.++.++|+|+++++++.|+.|.+||+. +++.+.
T Consensus 165 ~~~~~~V~~~~~~~V~viD~~t~---------~v~~~i~~g-~~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~ 234 (567)
T 1qks_A 165 LENLFSVTLRDAGQIALIDGSTY---------EIKTVLDTG-YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVA 234 (567)
T ss_dssp GGGEEEEEETTTTEEEEEETTTC---------CEEEEEECS-SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEE
T ss_pred CCceEEEEeCCCCeEEEEECCCC---------eEEEEEeCC-CCccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeE
Confidence 34456677778899999998765 334455433 356789999999999999999999999996 788888
Q ss_pred EeCCCCCCCCeeEEEEe----CCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec------------CCCeEEEEEee
Q psy10778 412 EIPCVDPNTPVSHVTMS----ETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS------------ELRITSVTFSN 474 (556)
Q Consensus 412 ~l~~~h~~~~V~~l~~s----p~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~------------~~~i~~i~~s~ 474 (556)
++.. ......++++ |+|+++++++. .+++|.++|.. .+++..+.. ...+..+..+
T Consensus 235 ~i~~---G~~P~~ia~s~~~~pDGk~l~v~n~----~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s- 306 (567)
T 1qks_A 235 EIKI---GSEARSIETSKMEGWEDKYAIAGAY----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS- 306 (567)
T ss_dssp EEEC---CSEEEEEEECCSTTCTTTEEEEEEE----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC-
T ss_pred EEec---CCCCceeEEccccCCCCCEEEEEEc----cCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEc-
Confidence 8876 4567899999 69999998875 67899999986 677766642 1267788888
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcCCCCCcCee
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~~~~~~~~~ 550 (556)
+++. .+++....+|.|.++|..+.+. +..+. ......++.|+|+|+++++++ .++.|.++|+.+++.+..+
T Consensus 307 -~~~~--~~vv~~~~~g~v~~vd~~~~~~~~v~~i~--~~~~~~d~~~~pdgr~~~va~~~sn~V~ViD~~t~kl~~~i 380 (567)
T 1qks_A 307 -HYRP--EFIVNVKETGKILLVDYTDLNNLKTTEIS--AERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAIE 380 (567)
T ss_dssp -SSSS--EEEEEETTTTEEEEEETTCSSEEEEEEEE--CCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred -CCCC--EEEEEecCCCeEEEEecCCCccceeeeee--ccccccCceECCCCCEEEEEeCCCCeEEEEECCCCcEEEEE
Confidence 6552 5666667789999999876543 33343 345678899999999887655 5789999999987655443
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.7e-10 Score=118.41 Aligned_cols=179 Identities=10% Similarity=-0.002 Sum_probs=134.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc--cccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTN--KIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~--~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
.+..+++++...++++|+.+ .+++|++....... .....++.. ...+.. |+.++| ++++|+++ .++.|++||
T Consensus 39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~-~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~d 112 (388)
T 1xip_A 39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKW-EKEIPD-VIFVCF--HGDQVLVS-TRNALYSLD 112 (388)
T ss_dssp CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSE-EEECTT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceE-EeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence 68899999999999999987 45569976542000 000012222 334666 999999 88999998 889999999
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcce
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQN 482 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~ 482 (556)
+.+......... + ..++..+.+.+. .++++. .+|.|.+||+. +.... ....|+|++|+ |+|
T Consensus 113 v~sl~~~~~~~~-~-~~~v~~i~~~~p--~~av~~-----~dG~L~v~dl~~~~~~~---~~~~Vs~v~WS--pkG---- 174 (388)
T 1xip_A 113 LEELSEFRTVTS-F-EKPVFQLKNVNN--TLVILN-----SVNDLSALDLRTKSTKQ---LAQNVTSFDVT--NSQ---- 174 (388)
T ss_dssp SSSTTCEEEEEE-C-SSCEEEEEECSS--EEEEEE-----TTSEEEEEETTTCCEEE---EEESEEEEEEC--SSE----
T ss_pred chhhhccCccce-e-ecceeeEEecCC--CEEEEE-----CCCCEEEEEccCCcccc---ccCCceEEEEc--CCc----
Confidence 987765555555 6 677888777654 377777 89999999997 55433 34689999999 886
Q ss_pred EEEEEeCCCeEEEEeCCCCeE--EEEecC--------CCCCCeEEEEEecCCCEEEE
Q psy10778 483 VIVTGHSDGTIQLWSGYKLAH--LLTLNT--------NVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 483 ~l~tg~~dg~I~iwd~~~~~~--~~~~~~--------~h~~~V~~l~~s~dg~~l~s 529 (556)
++.|..||++++|+...++. .+++.. +|...|.++.|.+++.++++
T Consensus 175 -~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~ 230 (388)
T 1xip_A 175 -LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAV 230 (388)
T ss_dssp -EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEE
T ss_pred -eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEE
Confidence 67899999999998876665 556621 36788999999999988886
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.25 E-value=9.1e-09 Score=100.87 Aligned_cols=224 Identities=8% Similarity=-0.091 Sum_probs=157.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|.+++.. ++........+...+.++++.++|+..++...++.|..|+.. +. .. ...+...
T Consensus 33 l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~-g~----~~----~~~~~~~ 102 (300)
T 2qc5_A 33 VWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKK-GG----FT----EYPLPQP 102 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----EE----EEECSST
T ss_pred EEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCC-CC----eE----EecCCCC
Confidence 33344457888888877 444332222334678999999999887777667889888865 31 00 0112223
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEE-EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIR-EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~-~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...+.++++.+++.+.++...++.|..+|.. ++... .+.. . ...+..++++++++..++.. .++.|..+|.
T Consensus 103 ~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~-~-~~~~~~i~~d~~g~l~v~~~-----~~~~i~~~~~ 174 (300)
T 2qc5_A 103 DSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPN-K-GSYPAFITLGSDNALWFTEN-----QNNSIGRITN 174 (300)
T ss_dssp TCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSS-T-TCCEEEEEECTTSSEEEEET-----TTTEEEEECT
T ss_pred CCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCC-C-CCCceeEEECCCCCEEEEec-----CCCeEEEECC
Confidence 4678999999999988888878899999988 65543 2332 3 46789999999988666554 5788999998
Q ss_pred CCcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 454 NAQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 454 ~g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+++..... .....+.+++++ ++| ++.++....+.|.+|+. +++............+.+++++++|++.++..
T Consensus 175 ~g~~~~~~~~~~~~~~~~i~~d--~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~ 248 (300)
T 2qc5_A 175 TGKLEEYPLPTNAAAPVGITSG--NDG---ALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEW 248 (300)
T ss_dssp TCCEEEEECSSTTCCEEEEEEC--TTS---SEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEET
T ss_pred CCcEEEeeCCCCCCCcceEEEC--CCC---CEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEecc
Confidence 77655422 123568899998 888 77777777789999998 55544432213456789999999999777776
Q ss_pred CCCcEEEEEcC
Q psy10778 532 TEGLVIIWESS 542 (556)
Q Consensus 532 ~Dg~V~vwdl~ 542 (556)
.++.|..|+..
T Consensus 249 ~~~~i~~~~~~ 259 (300)
T 2qc5_A 249 GANQIGRITND 259 (300)
T ss_dssp TTTEEEEECTT
T ss_pred CCCeEEEECCC
Confidence 77899999873
|
| >2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=99.24 E-value=3e-10 Score=114.56 Aligned_cols=205 Identities=8% Similarity=0.010 Sum_probs=135.7
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC---------------------------CcEEEEEeeec
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS---------------------------GNILVYEYELN 356 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D---------------------------g~I~vwd~~~~ 356 (556)
.|.+|++.+++...... +.. +.+++|+|||+.|+.++.+ ..|.+|++.++
T Consensus 86 ~l~~~~~~~g~~~~l~~--~~~-~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~ 162 (347)
T 2gop_A 86 EIWVADLETLSSKKILE--AKN-IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESE 162 (347)
T ss_dssp EEEEEETTTTEEEEEEE--ESE-EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTT
T ss_pred eEEEEECCCCceEEEEc--CCC-ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCC
Confidence 47778888776555443 223 9999999999999888642 46777877654
Q ss_pred cCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC-------cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC
Q psy10778 357 ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG-------TCLLWDINTIGYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 357 ~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-------~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp 429 (556)
+.+..+.. . .+..++|+|+| ++++++.++ ...+|.+.+++ .+.+.. ...+.. ++|
T Consensus 163 ---------~~~~~l~~-~-~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~-~~~l~~---~~~~~~--~sp 224 (347)
T 2gop_A 163 ---------EVIEEFEK-P-RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGK-EEKMFE---KVSFYA--VDS 224 (347)
T ss_dssp ---------EEEEEEEE-E-TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTE-EEEEEE---EESEEE--EEE
T ss_pred ---------eEEeeecC-C-CcccccCCCCe-EEEEEecccccccccccccEEEeCCCc-eEEecc---Ccceee--ECC
Confidence 11123333 3 77889999999 888776542 34555444444 444443 223333 499
Q ss_pred CCCeEEEEeecCc---CCCCeEEEEEeCCcEEEEee-cCCCeEE-EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE
Q psy10778 430 TNGEIASVLQTTK---TGGSILRLHTINAQLITSLA-SELRITS-VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL 504 (556)
Q Consensus 430 ~~~~i~s~s~~~~---~~d~~I~iwdi~g~~i~~~~-~~~~i~~-i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~ 504 (556)
+|+.|+.++.... .....|.+|| .++...... +...+.. +.|+ + .++++++.++.+++| +.+++..
T Consensus 225 dg~~l~~~~~~~~~~~~~~~~l~~~d-~~~~~~l~~~~~~~~~~~~~~s---d----g~~~~~~~~~~~~l~-~~~g~~~ 295 (347)
T 2gop_A 225 DGERILLYGKPEKKYMSEHNKLYIYD-GKEVMGILDEVDRGVGQAKIKD---G----KVYFTLFEEGSVNLY-IWDGEIK 295 (347)
T ss_dssp CSSCEEEEECCSSSCCCSSCEEEEEC-SSCEEESSTTCCSEEEEEEEET---T----EEEEEEEETTEEEEE-EESSSEE
T ss_pred CCCEEEEEEccccCCccccceEEEEC-CCceEeccccCCcccCCccEEc---C----cEEEEEecCCcEEEE-EcCCceE
Confidence 9999988773210 0135788888 666544333 3456665 7775 3 378888999999999 8766654
Q ss_pred EEecCCCCCCeEEEEEecCCCEEEEEcCCCcE-EEEEcC
Q psy10778 505 LTLNTNVALPVIAVTYSCDSQHLYASNTEGLV-IIWESS 542 (556)
Q Consensus 505 ~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V-~vwdl~ 542 (556)
.... +...|.+++|++ .++++++.++.. .+|.+.
T Consensus 296 ~~~~--~~~~v~~~~~s~--~~~~~~~~~~~~~~l~~~~ 330 (347)
T 2gop_A 296 PIAK--GRHWIMGFDVDE--IVVYLKETATRLRELFTWD 330 (347)
T ss_dssp EEEC--SSSEEEEEEESS--SEEEEEECSSSCCEEEEES
T ss_pred EEec--CCCeEEeeeeeC--cEEEEEcCCCChHHheEeC
Confidence 4443 467899999999 677777777765 778776
|
| >1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A | Back alignment and structure |
|---|
Probab=99.23 E-value=7.8e-10 Score=107.23 Aligned_cols=196 Identities=7% Similarity=-0.025 Sum_probs=138.5
Q ss_pred ceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10778 326 TIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
...+++++++|+.++ +.+.++.|.+|+..... .......+...+.+++++++++++++.. ++.|.+||.
T Consensus 25 ~p~~i~~~~~g~l~v~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~~i~~~~~g~l~v~~~-~~~i~~~d~ 94 (270)
T 1rwi_B 25 SPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---------TTVLPFNGLYQPQGLAVDGAGTVYVTDF-NNRVVTLAA 94 (270)
T ss_dssp CEEEEEECTTCCEEEEECSSSCEEEEECC--------------EECCCCSCCSCCCEEECTTCCEEEEET-TTEEEEECT
T ss_pred CccceEECCCCCEEEEccCCCCcEEEecCCCcc---------cceEeeCCcCCcceeEECCCCCEEEEcC-CCEEEEEeC
Confidence 678999999998776 44678899999865431 1011123335678899999999777766 889999998
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-EEEEe-ecCCCeEEEEEeeCCCCCcce
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ-LITSL-ASELRITSVTFSNAPEGVSQN 482 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-~i~~~-~~~~~i~~i~~s~~pdg~~~~ 482 (556)
.... ...+.... ...+..+++++++..+++.. .++.|.+|+.... ..... .....+.+++++ ++| +
T Consensus 95 ~~~~-~~~~~~~~-~~~p~~i~~~~~g~l~v~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~g---~ 162 (270)
T 1rwi_B 95 GSNN-QTVLPFDG-LNYPEGLAVDTQGAVYVADR-----GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD--NSG---N 162 (270)
T ss_dssp TCSC-CEECCCCS-CSSEEEEEECTTCCEEEEEG-----GGTEEEEECTTCCSCEECCCCSCCSCCCEEEC--TTC---C
T ss_pred CCce-EeeeecCC-cCCCcceEECCCCCEEEEEC-----CCCEEEEEECCCceeEeeccccCCCceeEEEe--CCC---C
Confidence 7654 33343202 36789999999988666655 5788999976532 22111 223467889999 888 7
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 483 VIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 483 ~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
++++...++.|.+||........... .+...+.+++++++|.++++...++.|.+|+..+.
T Consensus 163 l~v~~~~~~~i~~~~~~~~~~~~~~~-~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~ 223 (270)
T 1rwi_B 163 VYVTDTDNNRVVKLEAESNNQVVLPF-TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST 223 (270)
T ss_dssp EEEEEGGGTEEEEECTTTCCEEECCC-SSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCS
T ss_pred EEEEECCCCEEEEEecCCCceEeecc-cCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCC
Confidence 77777778999999987665444332 33367899999999988888878899999998764
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.20 E-value=4.1e-09 Score=104.46 Aligned_cols=213 Identities=7% Similarity=-0.026 Sum_probs=144.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-- 372 (556)
++.+...++.|..|+..+++.. .+ .....+.+++++++|+++++ . ++.|.+||..++. . +.+....
T Consensus 27 l~~~d~~~~~i~~~d~~~~~~~-~~--~~~~~~~~i~~~~dG~l~v~-~-~~~l~~~d~~~g~----~---~~~~~~~~~ 94 (297)
T 3g4e_A 27 LLFVDIPAKKVCRWDSFTKQVQ-RV--TMDAPVSSVALRQSGGYVAT-I-GTKFCALNWKEQS----A---VVLATVDND 94 (297)
T ss_dssp EEEEETTTTEEEEEETTTCCEE-EE--ECSSCEEEEEEBTTSSEEEE-E-TTEEEEEETTTTE----E---EEEEECCTT
T ss_pred EEEEECCCCEEEEEECCCCcEE-EE--eCCCceEEEEECCCCCEEEE-E-CCeEEEEECCCCc----E---EEEEecCCC
Confidence 5666677899999999876542 23 24567999999999995544 4 5678888876431 0 0011111
Q ss_pred CCCccEEEEEEccCCCEEEEEcC---------CCcEEEEeCCC-CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSE---------DGTCLLWDINT-IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~---------Dg~I~iwdl~~-~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.....+.+++++++|++.++... ...-.+|.+.. ++....... ......++|+|+++.++.+..
T Consensus 95 ~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~---~~~pngi~~spdg~~lyv~~~--- 168 (297)
T 3g4e_A 95 KKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ---VDISNGLDWSLDHKIFYYIDS--- 168 (297)
T ss_dssp CSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE---ESBEEEEEECTTSCEEEEEEG---
T ss_pred CCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec---cccccceEEcCCCCEEEEecC---
Confidence 12345889999999997765432 12334444432 343333332 355789999999987766542
Q ss_pred CCCCeEEEEEeC---CcEE-----EEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q psy10778 443 TGGSILRLHTIN---AQLI-----TSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513 (556)
Q Consensus 443 ~~d~~I~iwdi~---g~~i-----~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~ 513 (556)
.++.|.+|+++ |.+. ..+. .......++++ ++| ++.++...++.|..||..+++.+..+. .+..
T Consensus 169 -~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d--~~G---~lwva~~~~~~v~~~d~~tG~~~~~i~-~p~~ 241 (297)
T 3g4e_A 169 -LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID--AEG---KLWVACYNGGRVIRLDPVTGKRLQTVK-LPVD 241 (297)
T ss_dssp -GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB--TTS---CEEEEEETTTEEEEECTTTCCEEEEEE-CSSS
T ss_pred -CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC--CCC---CEEEEEcCCCEEEEEcCCCceEEEEEE-CCCC
Confidence 57899999973 4432 1221 23567889998 889 788888888999999998899998887 4557
Q ss_pred CeEEEEEe-cCCCEEEEEcC
Q psy10778 514 PVIAVTYS-CDSQHLYASNT 532 (556)
Q Consensus 514 ~V~~l~~s-~dg~~l~sgs~ 532 (556)
.+++++|. |+++.|+.++.
T Consensus 242 ~~t~~~f~g~d~~~L~vt~~ 261 (297)
T 3g4e_A 242 KTTSCCFGGKNYSEMYVTCA 261 (297)
T ss_dssp BEEEEEEESGGGCEEEEEEB
T ss_pred CceEEEEeCCCCCEEEEEcC
Confidence 89999999 88877665543
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.18 E-value=6.7e-10 Score=124.72 Aligned_cols=223 Identities=7% Similarity=-0.028 Sum_probs=147.7
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCc--------------EEEEEeeeccCcccccccCCC
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGN--------------ILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~--------------I~vwd~~~~~~~~~~~~~~~~ 368 (556)
..|++||+.+++...... +...+..++|+|| +.|+.++.++. |++|++.++... ..
T Consensus 189 ~~i~v~dl~tg~~~~~~~--~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~-------~~ 258 (741)
T 1yr2_A 189 RTVKFVGVADGKPLADEL--KWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSA-------DQ 258 (741)
T ss_dssp EEEEEEETTTCCEEEEEE--EEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGG-------CE
T ss_pred EEEEEEECCCCCCCCccC--CCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchh-------CE
Confidence 469999999887654321 1122357899999 99998887654 777777544110 11
Q ss_pred eEee--CCCccEEEEEEccCCCEEEEEcCCC-----cEEEEeCCCC--eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 369 TILL--GHSACVTDLYLCAGFSVAVSSSEDG-----TCLLWDINTI--GYIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 369 ~~l~--~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iwdl~~~--~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
.... .+...+..+.|+|+|++|+..+.++ .|.+||+.++ +..+.+.. + ...+... ++|+++.|+..+.
T Consensus 259 lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~-~-~~~~~~~-~~~dg~~l~~~s~ 335 (741)
T 1yr2_A 259 PVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIP-D-LKAQWDF-VDGVGDQLWFVSG 335 (741)
T ss_dssp EEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEEC-S-SSSCEEE-EEEETTEEEEEEC
T ss_pred EEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecC-C-CCceEEE-EeccCCEEEEEEC
Confidence 2222 3334588999999999888776543 8999999876 31445544 3 4444444 4588999988874
Q ss_pred cCcCCCCeEEEEEeCC--cEEEEe-ec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-CCeEEEEecCCCCCC
Q psy10778 440 TTKTGGSILRLHTINA--QLITSL-AS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-KLAHLLTLNTNVALP 514 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~g--~~i~~~-~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-~~~~~~~~~~~h~~~ 514 (556)
.. ...+.|.+||+++ .....+ .+ ...+.+++++ ++ .++++...|+..+||.+. +++....+.......
T Consensus 336 ~~-~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~---~~---~lv~~~~~dg~~~l~~~~~~g~~~~~l~~~~~~~ 408 (741)
T 1yr2_A 336 DG-APLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA---GN---RLFASYIHDAKSQVLAFDLDGKPAGAVSLPGIGS 408 (741)
T ss_dssp TT-CTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE---BT---EEEEEEEETTEEEEEEEETTSCEEEECBCSSSCE
T ss_pred CC-CCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE---CC---EEEEEEEECCEEEEEEEeCCCCceeeccCCCCeE
Confidence 21 1356799999974 233333 33 3446667776 34 688888899987777553 566677776323567
Q ss_pred eEEEEEecCCCEEEE----EcCCCcEEEEEcCCCC
Q psy10778 515 VIAVTYSCDSQHLYA----SNTEGLVIIWESSSHN 545 (556)
Q Consensus 515 V~~l~~s~dg~~l~s----gs~Dg~V~vwdl~~~~ 545 (556)
+..+.+++++..|+. ....+.|++||+.+++
T Consensus 409 v~~~~~s~d~~~l~~~~ss~~~P~~i~~~d~~tg~ 443 (741)
T 1yr2_A 409 ASGLSGRPGDRHAYLSFSSFTQPATVLALDPATAK 443 (741)
T ss_dssp EEEEECCBTCSCEEEEEEETTEEEEEEEEETTTTE
T ss_pred EEEeecCCCCCEEEEEEcCCCCCCEEEEEECCCCc
Confidence 889999999876552 2345899999998754
|
| >2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii} | Back alignment and structure |
|---|
Probab=99.18 E-value=5.1e-08 Score=95.45 Aligned_cols=221 Identities=11% Similarity=-0.018 Sum_probs=152.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|..++.. ++............+.++++.++|+++++...++.|..++.. +. .. ...+...
T Consensus 75 l~v~~~~~~~v~~~d~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~----~~----~~~~~~~ 144 (300)
T 2qc5_A 75 IWFTENGANKIGKLSKK-GGFTEYPLPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GT----IY----EYDLPNK 144 (300)
T ss_dssp EEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SC----EE----EEECSST
T ss_pred EEEEecCCCeEEEECCC-CCeEEecCCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CC----EE----EccCCCC
Confidence 44444557889999887 544322222244678999999999888877767888888765 21 00 0112234
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
...+.++++.+++++.++...++.|..+|. +++.... ... + ...+..+++++++...++.. ..+.|.+||.
T Consensus 145 ~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~-~-~~~~~~i~~d~~g~l~v~~~-----~~~~i~~~~~ 216 (300)
T 2qc5_A 145 GSYPAFITLGSDNALWFTENQNNSIGRITN-TGKLEEYPLPT-N-AAAPVGITSGNDGALWFVEI-----MGNKIGRITT 216 (300)
T ss_dssp TCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSS-T-TCCEEEEEECTTSSEEEEET-----TTTEEEEECT
T ss_pred CCCceeEEECCCCCEEEEecCCCeEEEECC-CCcEEEeeCCC-C-CCCcceEEECCCCCEEEEcc-----CCCEEEEEcC
Confidence 567899999999998777777889999998 5554432 223 3 45789999999887666554 5678999999
Q ss_pred CCcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE-ecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 454 NAQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT-LNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 454 ~g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~-~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+++..... .....+.+++++ ++| ++.++...++.|..+|. +++.... +. .....+.+++++++|++.++.
T Consensus 217 ~g~~~~~~~~~~~~~~~~i~~d--~~g---~l~v~~~~~~~i~~~~~-~g~~~~~~~~-~~~~~~~~i~~~~~g~l~v~~ 289 (300)
T 2qc5_A 217 TGEISEYDIPTPNARPHAITAG--KNS---EIWFTEWGANQIGRITN-DNTIQEYQLQ-TENAEPHGITFGKDGSVWFAL 289 (300)
T ss_dssp TCCEEEEECSSTTCCEEEEEEC--STT---CEEEEETTTTEEEEECT-TSCEEEEECC-STTCCCCCEEECTTSCEEEEC
T ss_pred CCcEEEEECCCCCCCceEEEEC--CCC---CEEEeccCCCeEEEECC-CCcEEEEECC-ccCCccceeEeCCCCCEEEEc
Confidence 76655432 134678899999 888 77776667799999998 5544322 22 234668899999999866655
Q ss_pred cCCCcEEEEEcC
Q psy10778 531 NTEGLVIIWESS 542 (556)
Q Consensus 531 s~Dg~V~vwdl~ 542 (556)
. + .|..++.+
T Consensus 290 ~-~-~i~~~~p~ 299 (300)
T 2qc5_A 290 K-C-KIGKLNLN 299 (300)
T ss_dssp S-S-EEEEEEEC
T ss_pred c-C-ceEEeCCC
Confidence 4 5 77777754
|
| >1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C* | Back alignment and structure |
|---|
Probab=99.17 E-value=4.4e-10 Score=115.29 Aligned_cols=160 Identities=10% Similarity=0.012 Sum_probs=118.5
Q ss_pred ceEEeccCCCeEEEEeCCCCC---------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccc
Q psy10778 294 GMICWNECDNLIRLKMSKELP---------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~---------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
++++.|+.++ +++|++++.. ........+.+ |++++| |+++|+++ .++.|++||+...
T Consensus 50 gll~a~~~~~-l~v~~~~~l~~~~~~~~~~~~~~~~~~lp~-V~~l~f--d~~~L~v~-~~~~l~v~dv~sl-------- 116 (388)
T 1xip_A 50 SLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEIPD-VIFVCF--HGDQVLVS-TRNALYSLDLEEL-------- 116 (388)
T ss_dssp TEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEECTT-EEEEEE--ETTEEEEE-ESSEEEEEESSST--------
T ss_pred CEEEEeCCCE-EEEEEhhHhhhhhccccccccceEEeeCCC-eeEEEE--CCCEEEEE-cCCcEEEEEchhh--------
Confidence 3677777764 4458764322 22212224556 999999 89999999 8899999998765
Q ss_pred cCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 365 CKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 365 ~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
........|..++.++.+.+. .+++++.||.+.+||+.++.... + ...|++++|||+| ++.+. .
T Consensus 117 -~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~-~-----~~~Vs~v~WSpkG--~~vg~-----~ 180 (388)
T 1xip_A 117 -SEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ-L-----AQNVTSFDVTNSQ--LAVLL-----K 180 (388)
T ss_dssp -TCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE-E-----EESEEEEEECSSE--EEEEE-----T
T ss_pred -hccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc-c-----cCCceEEEEcCCc--eEEEE-----c
Confidence 222455677788888887765 38888999999999999877643 2 3569999999998 67777 8
Q ss_pred CCeEEEEEeCCcE---EEEe------e----cCCCeEEEEEeeCCCCCcceEEEEE
Q psy10778 445 GSILRLHTINAQL---ITSL------A----SELRITSVTFSNAPEGVSQNVIVTG 487 (556)
Q Consensus 445 d~~I~iwdi~g~~---i~~~------~----~~~~i~~i~~s~~pdg~~~~~l~tg 487 (556)
+|++++|+.++.. ..++ . +...|.+++|. +++ .++++-
T Consensus 181 dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl--~~~---~flv~y 231 (388)
T 1xip_A 181 DRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTIL--SPQ---DFLAVF 231 (388)
T ss_dssp TSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEES--SSS---EEEEEE
T ss_pred CCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEe--cCC---eEEEEE
Confidence 9999999998655 4455 2 46789999999 777 677763
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=99.15 E-value=1.4e-09 Score=112.98 Aligned_cols=227 Identities=8% Similarity=-0.050 Sum_probs=152.4
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+.|.++|..+.+.+..+..+.. + .++++|||++++++. .++.|.++|..+. +.+..+.
T Consensus 99 ~~VsVID~~t~~vv~~I~vG~~-P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~---------~vv~~I~ 166 (426)
T 3c75_H 99 TQQFVIDGSTGRILGMTDGGFL-P--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF---------LPIADIE 166 (426)
T ss_dssp EEEEEEETTTTEEEEEEEECSS-C--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---------CEEEEEE
T ss_pred CeEEEEECCCCEEEEEEECCCC-C--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC---------cEEEEEE
Confidence 7999999999988888875543 3 899999999988876 4678999998765 3333332
Q ss_pred CC-------CccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCC-------CeeEEEEeCCCCeEEE
Q psy10778 373 GH-------SACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIREIPCVDPNT-------PVSHVTMSETNGEIAS 436 (556)
Q Consensus 373 ~h-------~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~l~~~h~~~-------~V~~l~~sp~~~~i~s 436 (556)
-. ......++++|+|++++.+.. +++|.+.|+.+++.+.++.. . .. .-..++++++|..++.
T Consensus 167 v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v-~-g~~~~~p~g~~~~v~~~~dG~~~~V 244 (426)
T 3c75_H 167 LPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDV-P-DCYHIFPASPTVFYMNCRDGSLARV 244 (426)
T ss_dssp ETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-C-SEEEEEEEETTEEEEEETTSSEEEE
T ss_pred CCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEc-C-CceeeccCCCcEEEEEcCCCCEEEE
Confidence 11 123456899999999888764 58899999999998887765 2 11 1112444555544433
Q ss_pred EeecC--------------------------------cCCCCeEEEEEeCCcEEEEe---ec-----------CCCeEEE
Q psy10778 437 VLQTT--------------------------------KTGGSILRLHTINAQLITSL---AS-----------ELRITSV 470 (556)
Q Consensus 437 ~s~~~--------------------------------~~~d~~I~iwdi~g~~i~~~---~~-----------~~~i~~i 470 (556)
..... ....+.|.+.|..+..+... .. ......+
T Consensus 245 ~~~~~~v~~~~~~~~~v~~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~v 324 (426)
T 3c75_H 245 DFADGETKVTNTEVFHTEDELLINHPAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQT 324 (426)
T ss_dssp ECCTTCCEEEECCCCSCTTSCBCSCCEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCE
T ss_pred ECCCCcEEEEeeeeeccCCCceeeEeeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceee
Confidence 32000 00334566666643221111 10 1112236
Q ss_pred EEeeCCCCCcceEEEEEeC----------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-EEEEEc-CCCcEEE
Q psy10778 471 TFSNAPEGVSQNVIVTGHS----------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-HLYASN-TEGLVII 538 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~----------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs-~Dg~V~v 538 (556)
+++ +++ +.+++... ++.|.+.|..+++.+.++..+ ....+++|+|||+ ++++.. .++.|.|
T Consensus 325 a~s--~dg---~rlyVa~~~~~~gthk~~s~~VsVID~~T~kvv~~I~vg--~~P~gia~spDg~~~lyv~n~~s~~VsV 397 (426)
T 3c75_H 325 AYH--RQS---DRIYLLVDQRDEWKHKAASRFVVVLNAETGERINKIELG--HEIDSINVSQDAEPLLYALSAGTQTLHI 397 (426)
T ss_dssp EEE--GGG---TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEE--EEECEEEECCSSSCEEEEEETTTTEEEE
T ss_pred EEc--CCC---CEEEEEecccccccccCCCCEEEEEECCCCeEEEEEECC--CCcCeEEEccCCCEEEEEEcCCCCeEEE
Confidence 788 776 44444431 357999999999999999742 4588999999999 888887 5899999
Q ss_pred EEcCCCCCcCee
Q psy10778 539 WESSSHNRTPKF 550 (556)
Q Consensus 539 wdl~~~~~~~~~ 550 (556)
+|+.+.+.+.++
T Consensus 398 ID~~t~kvv~tI 409 (426)
T 3c75_H 398 YDAATGEELRSV 409 (426)
T ss_dssp EETTTCCEEEEE
T ss_pred EECCCCCEEEEe
Confidence 999998877665
|
| >1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum} | Back alignment and structure |
|---|
Probab=99.13 E-value=3.8e-09 Score=118.54 Aligned_cols=201 Identities=7% Similarity=-0.084 Sum_probs=130.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCC-----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC
Q psy10778 323 LGATIATATTAPDCHTLWLGLTS-----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg 397 (556)
|...+..++|||||++||.++.+ .+|++||+.++ +.+. ...+...+..++|+|| +.|+.++.++
T Consensus 161 ~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg---------~~~~-~~~~~~~~~~~~wspD-~~l~~~~~~~ 229 (741)
T 1yr2_A 161 GATALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADG---------KPLA-DELKWVKFSGLAWLGN-DALLYSRFAE 229 (741)
T ss_dssp --EEEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTC---------CEEE-EEEEEEESCCCEESTT-SEEEEEECCC
T ss_pred CCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCC---------CCCC-ccCCCceeccEEEECC-CEEEEEEecC
Confidence 43468899999999999987654 46999998876 1111 1111222357899999 9888877665
Q ss_pred c--------------EEEEeCCCCeE--EEEeCCC-CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc--E-
Q psy10778 398 T--------------CLLWDINTIGY--IREIPCV-DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ--L- 457 (556)
Q Consensus 398 ~--------------I~iwdl~~~~~--v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~--~- 457 (556)
. |.+|++.++.. ...+... + ...+..+.|+|||++|+..+....+....|++||+++. .
T Consensus 230 ~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~-~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~ 308 (741)
T 1yr2_A 230 PKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPEL-PKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGP 308 (741)
T ss_dssp C--------CCCCCEEEEEETTSCGGGCEEEECCTTC-TTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECC
T ss_pred cccccccccCCCCCEEEEEECCCCchhCEEEeccCCC-CeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcc
Confidence 4 88999987652 2233320 2 23588999999999998887432112458999999743 2
Q ss_pred EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeC----CCeEEEEeCCCC-eEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 458 ITSL-ASELRITSVTFSNAPEGVSQNVIVTGHS----DGTIQLWSGYKL-AHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 458 i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~----dg~I~iwd~~~~-~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
...+ ......... ++ ++| +.|+..+. ++.|.+||+.++ .....+...+...+.+++++ ++.++++..
T Consensus 309 ~~~l~~~~~~~~~~-~~--~dg---~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~l~~~~~~~l~~~~~~-~~~lv~~~~ 381 (741)
T 1yr2_A 309 VTALIPDLKAQWDF-VD--GVG---DQLWFVSGDGAPLKKIVRVDLSGSTPRFDTVVPESKDNLESVGIA-GNRLFASYI 381 (741)
T ss_dssp CEEEECSSSSCEEE-EE--EET---TEEEEEECTTCTTCEEEEEECSSSSCEEEEEECCCSSEEEEEEEE-BTEEEEEEE
T ss_pred cEEecCCCCceEEE-Ee--ccC---CEEEEEECCCCCCCEEEEEeCCCCccccEEEecCCCCeEEEEEEE-CCEEEEEEE
Confidence 3333 334444444 34 566 55665554 456999998774 23333333455567788888 567788888
Q ss_pred CCCcEEEEEcC
Q psy10778 532 TEGLVIIWESS 542 (556)
Q Consensus 532 ~Dg~V~vwdl~ 542 (556)
.||..++|.+.
T Consensus 382 ~dg~~~l~~~~ 392 (741)
T 1yr2_A 382 HDAKSQVLAFD 392 (741)
T ss_dssp ETTEEEEEEEE
T ss_pred ECCEEEEEEEe
Confidence 89987777654
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=99.09 E-value=4.1e-08 Score=98.67 Aligned_cols=207 Identities=8% Similarity=0.005 Sum_probs=139.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG- 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~- 373 (556)
++.++..++.|..|+..+++... +. ....+.+++++++|+++++. .+ .|.+||..++. ...+..
T Consensus 63 l~~~d~~~~~i~~~d~~~~~~~~-~~--~~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~----------~~~~~~~ 127 (326)
T 2ghs_A 63 AWWFNILERELHELHLASGRKTV-HA--LPFMGSALAKISDSKQLIAS-DD-GLFLRDTATGV----------LTLHAEL 127 (326)
T ss_dssp EEEEEGGGTEEEEEETTTTEEEE-EE--CSSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCC----------EEEEECS
T ss_pred EEEEECCCCEEEEEECCCCcEEE-EE--CCCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCc----------EEEEeeC
Confidence 55556677899999988764332 22 34579999999998877654 44 48888865441 111211
Q ss_pred ----CCccEEEEEEccCCCEEEEEcC------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 374 ----HSACVTDLYLCAGFSVAVSSSE------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 374 ----h~~~V~~l~~s~~~~~l~sgs~------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
....+.+++++++|++.++... .+.|..++ +++....... ......++|+|+++.++.+..
T Consensus 128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~---~~~~~~i~~s~dg~~lyv~~~---- 198 (326)
T 2ghs_A 128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD---ISIPNSICFSPDGTTGYFVDT---- 198 (326)
T ss_dssp STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE---ESSEEEEEECTTSCEEEEEET----
T ss_pred CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC---CcccCCeEEcCCCCEEEEEEC----
Confidence 1246889999999997766542 24566666 4554333222 355789999999987766642
Q ss_pred CCCeEEEEEeC---C-c-----EEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCC
Q psy10778 444 GGSILRLHTIN---A-Q-----LITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVAL 513 (556)
Q Consensus 444 ~d~~I~iwdi~---g-~-----~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~ 513 (556)
.++.|.+||++ | . .+..+. ....+..++++ ++| ++.++...++.|..||. +++.+..+. .+..
T Consensus 199 ~~~~I~~~d~~~~~Gl~~~~~~~~~~~~~~~~~p~gi~~d--~~G---~lwva~~~~~~v~~~d~-~g~~~~~i~-~~~~ 271 (326)
T 2ghs_A 199 KVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD--AEG---HIWNARWGEGAVDRYDT-DGNHIARYE-VPGK 271 (326)
T ss_dssp TTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC--TTS---CEEEEEETTTEEEEECT-TCCEEEEEE-CSCS
T ss_pred CCCEEEEEEcccccCCcccCceEEEECCCCCCCCCeeEEC--CCC---CEEEEEeCCCEEEEECC-CCCEEEEEE-CCCC
Confidence 56899999984 4 2 122221 23456788888 888 77777767789999998 677777776 4456
Q ss_pred CeEEEEEe-cCCCEEEEEcC
Q psy10778 514 PVIAVTYS-CDSQHLYASNT 532 (556)
Q Consensus 514 ~V~~l~~s-~dg~~l~sgs~ 532 (556)
.+++++|+ ++++.|++++.
T Consensus 272 ~~~~~af~g~d~~~L~vt~~ 291 (326)
T 2ghs_A 272 QTTCPAFIGPDASRLLVTSA 291 (326)
T ss_dssp BEEEEEEESTTSCEEEEEEB
T ss_pred CcEEEEEecCCCCEEEEEec
Confidence 79999999 88877765543
|
| >1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ... | Back alignment and structure |
|---|
Probab=99.09 E-value=1.3e-08 Score=100.81 Aligned_cols=203 Identities=8% Similarity=-0.009 Sum_probs=137.2
Q ss_pred CCceEEEEEcCCCCEEEE-------EeCCCcEEEEEeeeccCcccccccCCCeEee-----CCCccEEEEEEccC-CCEE
Q psy10778 324 GATIATATTAPDCHTLWL-------GLTSGNILVYEYELNASTNKIEFCKPPTILL-----GHSACVTDLYLCAG-FSVA 390 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~t-------gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-----~h~~~V~~l~~s~~-~~~l 390 (556)
.....+++|+++|+.+++ +..++.|.+|+..++. ...+. ++...+.+++++++ ++++
T Consensus 17 ~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~----------~~~~~~~~~~~~~~~~~~i~~~~~~g~l~ 86 (314)
T 1pjx_A 17 IPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGK----------KTVICKPEVNGYGGIPAGCQCDRDANQLF 86 (314)
T ss_dssp CTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCC----------EEEEECCEETTEECCEEEEEECSSSSEEE
T ss_pred CCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCc----------EEEEEecccCCCCCCCceEEEecCCCcEE
Confidence 345689999999988877 5778899999865441 11121 25567899999999 7666
Q ss_pred EEEcCCCcEEEEeCCCCeEEEE-eCCC--CCCCCeeEEEEeCCCCeEEEEeecCcCCC---------------CeEEEEE
Q psy10778 391 VSSSEDGTCLLWDINTIGYIRE-IPCV--DPNTPVSHVTMSETNGEIASVLQTTKTGG---------------SILRLHT 452 (556)
Q Consensus 391 ~sgs~Dg~I~iwdl~~~~~v~~-l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~~~~d---------------~~I~iwd 452 (556)
++.. .+.|.+||.. ++.... .... .....+..+++++++..+++.. .+ +.|..++
T Consensus 87 v~~~-~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~-----~~~~~~~~~~~~~~~~~~~l~~~~ 159 (314)
T 1pjx_A 87 VADM-RLGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAP-----AGEVAPADYTRSMQEKFGSIYCFT 159 (314)
T ss_dssp EEET-TTEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEEC-----BCBCTTSCCCBTTSSSCEEEEEEC
T ss_pred EEEC-CCCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEec-----CcccccccccccccCCCCeEEEEC
Confidence 6554 4478999998 765433 2210 1023588999999987776654 22 5677777
Q ss_pred eCCcEEEEeecCCCeEEEEEe--eCCCCCcceEEE-EEeCCCeEEEEeCC-CCe-----EEEEecCCCC-CCeEEEEEec
Q psy10778 453 INAQLITSLASELRITSVTFS--NAPEGVSQNVIV-TGHSDGTIQLWSGY-KLA-----HLLTLNTNVA-LPVIAVTYSC 522 (556)
Q Consensus 453 i~g~~i~~~~~~~~i~~i~~s--~~pdg~~~~~l~-tg~~dg~I~iwd~~-~~~-----~~~~~~~~h~-~~V~~l~~s~ 522 (556)
.+++.............++++ .++++ +.|+ +...++.|.+||.. +++ ....+. .+. ..+..+++++
T Consensus 160 ~~g~~~~~~~~~~~~~~i~~~~~~d~dg---~~l~v~~~~~~~i~~~~~~~~g~~~~~~~~~~~~-~~~~~~p~~i~~d~ 235 (314)
T 1pjx_A 160 TDGQMIQVDTAFQFPNGIAVRHMNDGRP---YQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIP-GTHEGGADGMDFDE 235 (314)
T ss_dssp TTSCEEEEEEEESSEEEEEEEECTTSCE---EEEEEEETTTTEEEEEEEEETTEEEEEEEEEECC-CCSSCEEEEEEEBT
T ss_pred CCCCEEEeccCCCCcceEEEecccCCCC---CEEEEEECCCCeEEEEECCCCCccccceEEEECC-CCCCCCCCceEECC
Confidence 766655444444566788887 22455 4554 44567899999975 443 222333 333 5688999999
Q ss_pred CCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 523 DSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 523 dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+|+++++...++.|.+||..+++..
T Consensus 236 ~G~l~v~~~~~~~i~~~d~~~g~~~ 260 (314)
T 1pjx_A 236 DNNLLVANWGSSHIEVFGPDGGQPK 260 (314)
T ss_dssp TCCEEEEEETTTEEEEECTTCBSCS
T ss_pred CCCEEEEEcCCCEEEEEcCCCCcEe
Confidence 9998888878899999998865543
|
| >3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B | Back alignment and structure |
|---|
Probab=99.06 E-value=4.3e-08 Score=97.00 Aligned_cols=207 Identities=7% Similarity=-0.012 Sum_probs=137.0
Q ss_pred CceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 325 ATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 325 ~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
.---+..|++++ ..+++...++.|..|+..++ + ... ......+.+++++++++++++. ++.|.+||
T Consensus 13 ~~~Egp~w~~~~~~l~~~d~~~~~i~~~d~~~~---------~-~~~-~~~~~~~~~i~~~~dG~l~v~~--~~~l~~~d 79 (297)
T 3g4e_A 13 RCGESPVWEEVSNSLLFVDIPAKKVCRWDSFTK---------Q-VQR-VTMDAPVSSVALRQSGGYVATI--GTKFCALN 79 (297)
T ss_dssp SBEEEEEEETTTTEEEEEETTTTEEEEEETTTC---------C-EEE-EECSSCEEEEEEBTTSSEEEEE--TTEEEEEE
T ss_pred ccccCCeEECCCCEEEEEECCCCEEEEEECCCC---------c-EEE-EeCCCceEEEEECCCCCEEEEE--CCeEEEEE
Confidence 344578899854 45666667889999997654 1 122 2345679999999999966554 56799999
Q ss_pred CCCCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEEEeecCc------CCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeC
Q psy10778 404 INTIGYIREIPCV--DPNTPVSHVTMSETNGEIASVLQTTK------TGGSILRLHTINAQLITSLASELRITSVTFSNA 475 (556)
Q Consensus 404 l~~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~~------~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~ 475 (556)
..+++........ .....+..++++|+|+.+++...... ...+.|..++.+++...........+.++|+
T Consensus 80 ~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~~~~pngi~~s-- 157 (297)
T 3g4e_A 80 WKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQVDISNGLDWS-- 157 (297)
T ss_dssp TTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEEESBEEEEEEC--
T ss_pred CCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeeccccccceEEc--
Confidence 9887654332210 00235788999999986665431100 0123455555556655444445667899999
Q ss_pred CCCCcceEE-EEEeCCCeEEEEeC--CCCeE-----EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 476 PEGVSQNVI-VTGHSDGTIQLWSG--YKLAH-----LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 476 pdg~~~~~l-~tg~~dg~I~iwd~--~~~~~-----~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
|++ +.| ++.+.++.|.+|++ .++.. +..+. .+...+..++++++|++.++...++.|.+||..+++.+
T Consensus 158 pdg---~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~-~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~ 233 (297)
T 3g4e_A 158 LDH---KIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLE-KEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRL 233 (297)
T ss_dssp TTS---CEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECC-GGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEE
T ss_pred CCC---CEEEEecCCCCcEEEEeccCCCCcccCcEEEEECC-CCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEE
Confidence 888 555 55666889999986 45543 22222 23356889999999988888878889999999876654
Q ss_pred Cee
Q psy10778 548 PKF 550 (556)
Q Consensus 548 ~~~ 550 (556)
..+
T Consensus 234 ~~i 236 (297)
T 3g4e_A 234 QTV 236 (297)
T ss_dssp EEE
T ss_pred EEE
Confidence 433
|
| >3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.5e-08 Score=103.73 Aligned_cols=196 Identities=9% Similarity=-0.065 Sum_probs=137.9
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC--cEEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG--TCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--~I~i 401 (556)
......++++++++++++...++.|++||...+ ........ ..... ++|+++++.|++++.++ .|.+
T Consensus 130 ~~~P~~la~d~~g~lyv~d~~~~~I~~id~~~g---------~~~~~~~~-~~~~~-ia~~~~g~~l~~~d~~~~~~I~~ 198 (409)
T 3hrp_A 130 FKYMWGIAAVGNNTVLAYQRDDPRVRLISVDDN---------KVTTVHPG-FKGGK-PAVTKDKQRVYSIGWEGTHTVYV 198 (409)
T ss_dssp CCCEEEEEECSTTEEEEEETTTTEEEEEETTTT---------EEEEEEET-CCBCB-CEECTTSSEEEEEBSSTTCEEEE
T ss_pred cCCceEEEEeCCCCEEEEecCCCcEEEEECCCC---------EEEEeecc-CCCCc-eeEecCCCcEEEEecCCCceEEE
Confidence 346789999999987777777899999998754 11122222 22233 99999999998888766 7888
Q ss_pred EeCCCCeEEEEe----CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe----e-cC-CCe-E-E
Q psy10778 402 WDINTIGYIREI----PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL----A-SE-LRI-T-S 469 (556)
Q Consensus 402 wdl~~~~~v~~l----~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~----~-~~-~~i-~-~ 469 (556)
++...+...+.+ .. . ...+.+++++|+++.|+++. .++.|+.||.++.....+ . .. ..- . .
T Consensus 199 ~d~~~~~~~~~~g~~~~~-~-~~~p~~iav~p~~g~lyv~d-----~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ 271 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLGST-F-SGKIGAVALDETEEWLYFVD-----SNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPY 271 (409)
T ss_dssp EEGGGTTCEEEEEECCTT-S-CSCCCBCEECTTSSEEEEEC-----TTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCE
T ss_pred EEcCCCceeEEeeeccch-h-cCCcEEEEEeCCCCeEEEEE-----CCCcEEEEECCCCCEEEEecccccCCCCCCcccc
Confidence 988765544444 31 2 46678999999767777765 678999999974333333 1 11 111 3 9
Q ss_pred EEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC---------------CCCeEEEEEecCCCEEEEEc-C
Q psy10778 470 VTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV---------------ALPVIAVTYSCDSQHLYASN-T 532 (556)
Q Consensus 470 i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h---------------~~~V~~l~~s~dg~~l~sgs-~ 532 (556)
++|+ | ++ .++++...++.|+.|+.. ++ +..+. ++ -.....++++++|+++++-+ .
T Consensus 272 ia~~--p~~g---~lyv~d~~~~~I~~~~~~-g~-~~~~~-g~~~~~g~~dg~~~~~~~~~P~gia~d~dG~lyvad~~~ 343 (409)
T 3hrp_A 272 LIYY--FVDS---NFYMSDQNLSSVYKITPD-GE-CEWFC-GSATQKTVQDGLREEALFAQPNGMTVDEDGNFYIVDGFK 343 (409)
T ss_dssp EEEE--TTTT---EEEEEETTTTEEEEECTT-CC-EEEEE-ECTTCCSCBCEEGGGCBCSSEEEEEECTTCCEEEEETTT
T ss_pred EEEe--CCCC---EEEEEeCCCCEEEEEecC-CC-EEEEE-eCCCCCCcCCCcccccEeCCCeEEEEeCCCCEEEEeCCC
Confidence 9999 7 46 777777788999999974 33 22332 12 14588999999999888877 8
Q ss_pred CCcEEEEEcCCCC
Q psy10778 533 EGLVIIWESSSHN 545 (556)
Q Consensus 533 Dg~V~vwdl~~~~ 545 (556)
+++|+.|++.++.
T Consensus 344 ~~~I~~~~~~~G~ 356 (409)
T 3hrp_A 344 GYCLRKLDILDGY 356 (409)
T ss_dssp TCEEEEEETTTTE
T ss_pred CCEEEEEECCCCE
Confidence 8999999976654
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.02 E-value=3.1e-08 Score=98.45 Aligned_cols=217 Identities=8% Similarity=-0.004 Sum_probs=142.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL-- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-- 372 (556)
++.++..++.|..|+.. ++. ..+. .+...+..++++++|+++++...++.|.+|+.+ +. ...+.
T Consensus 59 l~~~d~~~~~i~~~~~~-g~~-~~~~-~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~~-g~----------~~~~~~~ 124 (305)
T 3dr2_A 59 LVWSDLVGRRVLGWRED-GTV-DVLL-DATAFTNGNAVDAQQRLVHCEHGRRAITRSDAD-GQ----------AHLLVGR 124 (305)
T ss_dssp EEEEETTTTEEEEEETT-SCE-EEEE-ESCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SC----------EEEEECE
T ss_pred EEEEECCCCEEEEEeCC-CCE-EEEe-CCCCccceeeECCCCCEEEEECCCCEEEEECCC-CC----------EEEEEec
Confidence 56667778899999873 443 2332 345678999999999977666666788888864 21 11111
Q ss_pred --CC-CccEEEEEEccCCCEEEE----EcC-------------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC
Q psy10778 373 --GH-SACVTDLYLCAGFSVAVS----SSE-------------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG 432 (556)
Q Consensus 373 --~h-~~~V~~l~~s~~~~~l~s----gs~-------------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~ 432 (556)
+. ...+.+++++++|++.++ |.. .+.|..+|..+++..... . ......++|+|+++
T Consensus 125 ~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~---~~~p~gl~~spdg~ 200 (305)
T 3dr2_A 125 YAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D---LDHPNGLAFSPDEQ 200 (305)
T ss_dssp ETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E---ESSEEEEEECTTSS
T ss_pred cCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c---CCCCcceEEcCCCC
Confidence 11 134678999999998886 332 256788887666544433 4 34578899999999
Q ss_pred eEEEEeecC-cCCCCeEEEEEeCCcEEEEe---e--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 433 EIASVLQTT-KTGGSILRLHTINAQLITSL---A--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 433 ~i~s~s~~~-~~~d~~I~iwdi~g~~i~~~---~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
.++.+.... ....+.|.+|++++..+... . .......++++ ++| + |.+++.+ .|.+|+. +++.+..
T Consensus 201 ~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d--~~G---~-lwv~~~~-gv~~~~~-~g~~~~~ 272 (305)
T 3dr2_A 201 TLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVD--RGG---W-LWSSSGT-GVCVFDS-DGQLLGH 272 (305)
T ss_dssp EEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEEC--TTS---C-EEECCSS-EEEEECT-TSCEEEE
T ss_pred EEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEEC--CCC---C-EEEecCC-cEEEECC-CCCEEEE
Confidence 887775200 00027899999873322211 1 13445678888 888 6 4444444 5999997 6788877
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
+.. . ..+.+++|+++++.|+.++.++ +..++
T Consensus 273 ~~~-~-~~~~~~~f~~d~~~L~it~~~~-l~~~~ 303 (305)
T 3dr2_A 273 IPT-P-GTASNCTFDQAQQRLFITGGPC-LWMLP 303 (305)
T ss_dssp EEC-S-SCCCEEEECTTSCEEEEEETTE-EEEEE
T ss_pred EEC-C-CceeEEEEeCCCCEEEEEcCCe-EEEEE
Confidence 763 3 3688999999998888887764 44333
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=99.02 E-value=9e-09 Score=105.23 Aligned_cols=226 Identities=12% Similarity=0.023 Sum_probs=150.3
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCC------CCceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPL------GATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h------~~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
..++.|.+||..+.+....+..+. ...-..++++|||++++++.. ++.|.++|..++ +.+.++
T Consensus 106 ~~~~~VsviD~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~---------~vv~tI 176 (386)
T 3sjl_D 106 ERTDYVEVFDPVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGK---------AFKRML 176 (386)
T ss_dssp EEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTT---------EEEEEE
T ss_pred CCCCEEEEEECCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCC---------cEEEEE
Confidence 357899999999988777765432 123557899999999998864 689999999876 333444
Q ss_pred eCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCC-CeEEEEeCCCC---CCCCee-EEEEe-CCCCeEEEEeecCcCCC
Q psy10778 372 LGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-IGYIREIPCVD---PNTPVS-HVTMS-ETNGEIASVLQTTKTGG 445 (556)
Q Consensus 372 ~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-~~~v~~l~~~h---~~~~V~-~l~~s-p~~~~i~s~s~~~~~~d 445 (556)
.-.. . ...+....+.+++.+.||.+.+.++.+ ++...+... . ...++. ..+|. ++| .++..+ .+
T Consensus 177 ~v~g--~-~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~-~~~~~~~~~~~~~~~~~~dG-~~~~vs-----~~ 246 (386)
T 3sjl_D 177 DVPD--C-YHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE-VFHPEDEFLINHPAYSQKAG-RLVWPT-----YT 246 (386)
T ss_dssp ECCS--E-EEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC-CCSCTTSCBCSCCEEETTTT-EEEEEB-----TT
T ss_pred ECCC--c-ceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc-eeccccccccccceeEcCCC-cEEEEe-----CC
Confidence 3211 1 122333445777888899998888876 554332211 1 012222 24665 455 444455 68
Q ss_pred CeEEEEEeCCc---EEEEee-----------cCCCeEEEEEeeCCCCCcceEEEEEeC----------CCeEEEEeCCCC
Q psy10778 446 SILRLHTINAQ---LITSLA-----------SELRITSVTFSNAPEGVSQNVIVTGHS----------DGTIQLWSGYKL 501 (556)
Q Consensus 446 ~~I~iwdi~g~---~i~~~~-----------~~~~i~~i~~s~~pdg~~~~~l~tg~~----------dg~I~iwd~~~~ 501 (556)
+.|++.|..+. .+..+. ..+....++++ +++ +.+.+... .+.|.+.|+.++
T Consensus 247 g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~--~~~---~~lyV~~~~~~~~~hk~~~~~V~viD~~t~ 321 (386)
T 3sjl_D 247 GKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYH--RAL---DRIYLLVDQRDEWRHKTASRFVVVLDAKTG 321 (386)
T ss_dssp SEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEE--TTT---TEEEEEEEECCTTCTTSCEEEEEEEETTTC
T ss_pred CEEEEEECCCCcceeecceeccccccccccccCCCcceeeEC--CCC---CeEEEEeccccccccCCCCCEEEEEECCCC
Confidence 89999999743 222221 12334457777 777 45554432 257999999999
Q ss_pred eEEEEecCCCCCCeEEEEEecCCC-EEEEE-cCCCcEEEEEcCCCCCcCeee
Q psy10778 502 AHLLTLNTNVALPVIAVTYSCDSQ-HLYAS-NTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 502 ~~~~~~~~~h~~~V~~l~~s~dg~-~l~sg-s~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+.++.+..+ ..+.++++++|++ +|+++ ..++.|.++|..+++.+.+++
T Consensus 322 kv~~~i~vg--~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~ 371 (386)
T 3sjl_D 322 ERLAKFEMG--HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN 371 (386)
T ss_dssp CEEEEEEEE--EEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred eEEEEEECC--CCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence 999999843 5788999999996 66665 458999999999988776654
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.98 E-value=9.1e-11 Score=120.53 Aligned_cols=201 Identities=9% Similarity=-0.016 Sum_probs=108.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..|+.||.|+.||..+++.+..+.. +.+.+..+..++..+++++.||.|+.||..++ +.+..+..+
T Consensus 11 ~v~~gs~dg~v~a~d~~tG~~~W~~~~---~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG---------~~~w~~~~~ 78 (369)
T 2hz6_A 11 LLFVSTLDGSLHAVSKRTGSIKWTLKE---DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNN---------EGLTKLPFT 78 (369)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEEC---CCSCCCC-----CCEEECTTTCCEEEC--------------CCSEECSCC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEecC---CCceecceEcCCCEEEEeCCCCEEEEEECCCC---------ceeeeeecc
Confidence 778889999999999999988776653 45555555667778888889999999999776 222222222
Q ss_pred Ccc-EE-EEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SAC-VT-DLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~-V~-~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
... +. +..+. .+..+++|+.|+.++.||..+|+.+..+.. + . ...++|+++.+++++ .++.|+.||
T Consensus 79 ~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~-~-~----~~~~~p~~~~v~~~~-----~dg~v~a~d 146 (369)
T 2hz6_A 79 IPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSS-A-F----ADSLSPSTSLLYLGR-----TEYTITMYD 146 (369)
T ss_dssp HHHHHTTCSCC------CCCCEEEEEEEEECCC----------------------------EEEEE-----EEEEEECCC
T ss_pred CccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecC-C-C----cccccccCCEEEEEe-----cCCEEEEEE
Confidence 110 10 00111 345678888899999999999998887776 3 2 234566888888887 789999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEE-EEEecCC
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIA-VTYSCDS 524 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~-l~~s~dg 524 (556)
.+ |+.+....... ....++. .+......+++++.+|.|+.||..+++.+.... ...++.. ..++++|
T Consensus 147 ~~tG~~~W~~~~~~-~~~~~~~--~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~~--~~~pv~~~~~~~~dg 215 (369)
T 2hz6_A 147 TKTRELRWNATYFD-YAASLPE--DDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQN--YASPVVAFYVWQREG 215 (369)
T ss_dssp SSSSSCCCEEEEEE-ECCBCCC--CCTTCCCCEEEEETSCEEEEECTTTCCEEEEEE--CSSCEEEEEECTTSS
T ss_pred CCCCCEEEeEeccc-ccCcccc--CCccccceEEEECCCCEEEEEECCCCcEEEEec--CCCceEEEEEecCCc
Confidence 86 77655443211 1112222 211000256778889999999999999888876 2344443 2333444
|
| >2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=1.5e-07 Score=94.42 Aligned_cols=196 Identities=13% Similarity=0.082 Sum_probs=129.2
Q ss_pred eEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 327 IATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 327 V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
..+.+|++++ ..++++..++.|..|+..++. ...+. ....+.+++++++++++++. .+| |.+||..
T Consensus 51 ~egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~----------~~~~~-~~~~v~~i~~~~dg~l~v~~-~~g-l~~~d~~ 117 (326)
T 2ghs_A 51 GEGPTFDPASGTAWWFNILERELHELHLASGR----------KTVHA-LPFMGSALAKISDSKQLIAS-DDG-LFLRDTA 117 (326)
T ss_dssp EEEEEEETTTTEEEEEEGGGTEEEEEETTTTE----------EEEEE-CSSCEEEEEEEETTEEEEEE-TTE-EEEEETT
T ss_pred CcCCeEeCCCCEEEEEECCCCEEEEEECCCCc----------EEEEE-CCCcceEEEEeCCCeEEEEE-CCC-EEEEECC
Confidence 4567899974 456666678899999876531 11222 34679999999999877765 444 9999998
Q ss_pred CCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEEEeecC-cCCCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcce
Q psy10778 406 TIGYIREIPCV--DPNTPVSHVTMSETNGEIASVLQTT-KTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQN 482 (556)
Q Consensus 406 ~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s~s~~~-~~~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~ 482 (556)
+++........ .....+..++++|+|+.+++..... ....+.|..++ +++.............++|+ +++ +
T Consensus 118 ~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~-~g~~~~~~~~~~~~~~i~~s--~dg---~ 191 (326)
T 2ghs_A 118 TGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA-KGKVTKLFADISIPNSICFS--PDG---T 191 (326)
T ss_dssp TCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE-TTEEEEEEEEESSEEEEEEC--TTS---C
T ss_pred CCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe-CCcEEEeeCCCcccCCeEEc--CCC---C
Confidence 87754333210 1023588999999998666543100 00125666666 56544333334567899999 888 6
Q ss_pred EEE-EEeCCCeEEEEeCC--CC-e-----EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 483 VIV-TGHSDGTIQLWSGY--KL-A-----HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 483 ~l~-tg~~dg~I~iwd~~--~~-~-----~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.++ +.+.++.|.+||+. ++ + .+..+. .....+.+++++++|.+.++...++.|.+|+..
T Consensus 192 ~lyv~~~~~~~I~~~d~~~~~Gl~~~~~~~~~~~~-~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~~ 259 (326)
T 2ghs_A 192 TGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDTD 259 (326)
T ss_dssp EEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECTT
T ss_pred EEEEEECCCCEEEEEEcccccCCcccCceEEEECC-CCCCCCCeeEECCCCCEEEEEeCCCEEEEECCC
Confidence 554 44567899999975 55 2 233333 234567899999999888777677899999983
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.94 E-value=3.9e-08 Score=109.48 Aligned_cols=227 Identities=6% Similarity=-0.051 Sum_probs=142.0
Q ss_pred ccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCc-------------EEEEEeeeccCccccccc
Q psy10778 299 NECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGN-------------ILVYEYELNASTNKIEFC 365 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~-------------I~vwd~~~~~~~~~~~~~ 365 (556)
|+.+..|+++|+++++...... +......++|+ ||+.|+.++.+.. |++|++.+.....
T Consensus 151 G~~~~~i~v~dl~tg~~~~~~~--~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~----- 222 (693)
T 3iuj_A 151 GSDWREIHLMDVESKQPLETPL--KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDD----- 222 (693)
T ss_dssp SCCEEEEEEEETTTCSEEEEEE--EEEESCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGC-----
T ss_pred CCceEEEEEEECCCCCCCcccc--CCceeccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccc-----
Confidence 4445789999999987544321 11112567899 9999999887743 8888876542111
Q ss_pred CCCeEeeC-CCccEEEEEEccCCCEEEEEc----CCCcEEEEeCCCCe-EEEEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 366 KPPTILLG-HSACVTDLYLCAGFSVAVSSS----EDGTCLLWDINTIG-YIREIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 366 ~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs----~Dg~I~iwdl~~~~-~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
..+..... |...+..+.|+|+|++|+..+ .+..|.++|+.++. ..+.+.. + ....... ++++++.|+..+.
T Consensus 223 ~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~-~-~~~~~~~-~~~~g~~l~~~t~ 299 (693)
T 3iuj_A 223 RLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQG-D-LDADVSL-VDNKGSTLYLLTN 299 (693)
T ss_dssp EEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEEC-S-SSSCEEE-EEEETTEEEEEEC
T ss_pred eEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeC-C-CCceEEE-EeccCCEEEEEEC
Confidence 11111223 445678899999999765433 23589999998763 3445544 4 4444444 6777887776663
Q ss_pred cCcCCCCeEEEEEeCC-cE---EEEeecCCCeEEEEEeeCCCCCcceEEE-EEeCCC--eEEEEeCCCCeEEEEecCCCC
Q psy10778 440 TTKTGGSILRLHTINA-QL---ITSLASELRITSVTFSNAPEGVSQNVIV-TGHSDG--TIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~g-~~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~-tg~~dg--~I~iwd~~~~~~~~~~~~~h~ 512 (556)
... ..+.|..+|+++ .. .....+...+. .|+ +++ +.|+ +...+| .|++|++. +.....+.....
T Consensus 300 ~~~-~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~~s--~~g---~~lv~~~~~~g~~~l~~~d~~-g~~~~~l~~p~~ 370 (693)
T 3iuj_A 300 RDA-PNRRLVTVDAANPGPAHWRDLIPERQQVL--TVH--SGS---GYLFAEYMVDATARVEQFDYE-GKRVREVALPGL 370 (693)
T ss_dssp TTC-TTCEEEEEETTSCCGGGCEEEECCCSSCE--EEE--EET---TEEEEEEEETTEEEEEEECTT-SCEEEEECCSSS
T ss_pred CCC-CCCEEEEEeCCCCCccccEEEecCCCCEE--EEE--EEC---CEEEEEEEECCeeEEEEEECC-CCeeEEeecCCC
Confidence 211 246899999873 22 22233444444 777 566 4554 444555 68899986 445556543344
Q ss_pred CCeEEEEEecCCCEEEEEcCC----CcEEEEEcCCCC
Q psy10778 513 LPVIAVTYSCDSQHLYASNTE----GLVIIWESSSHN 545 (556)
Q Consensus 513 ~~V~~l~~s~dg~~l~sgs~D----g~V~vwdl~~~~ 545 (556)
..+..+.+++++..++....+ +.|..||+.+++
T Consensus 371 ~~~~~~~~~~d~~~l~~~~ss~~tP~~l~~~d~~~g~ 407 (693)
T 3iuj_A 371 GSVSGFNGKHDDPALYFGFENYAQPPTLYRFEPKSGA 407 (693)
T ss_dssp SEEEECCCCTTCSCEEEEEECSSSCCEEEEECTTTCC
T ss_pred ceEEeeecCCCCCEEEEEecCCCCCCEEEEEECCCCe
Confidence 567788888888766655444 889999987754
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.93 E-value=9e-09 Score=105.12 Aligned_cols=220 Identities=10% Similarity=-0.035 Sum_probs=142.4
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|.+.|..+++.+..+..+.. + .++++||+++++++. .++.|.+||..+. +.+..+..
T Consensus 47 ~vsvID~~t~~v~~~i~vG~~-P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~---------~vv~~I~v 114 (368)
T 1mda_H 47 ENWVSCAGCGVTLGHSLGAFL-S--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---------LPIADIEL 114 (368)
T ss_dssp EEEEEETTTTEEEEEEEECTT-C--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---------CEEEEEEE
T ss_pred eEEEEECCCCeEEEEEeCCCC-C--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---------CEEEEEEC
Confidence 888999999988888876654 4 799999999999886 4789999999876 44455542
Q ss_pred C-------CccEEEEEEccCCCEEEEEcC--CCcEEE--EeCCCCeEEEEeCCCC-----CCCCeeEEEEeCCCC-----
Q psy10778 374 H-------SACVTDLYLCAGFSVAVSSSE--DGTCLL--WDINTIGYIREIPCVD-----PNTPVSHVTMSETNG----- 432 (556)
Q Consensus 374 h-------~~~V~~l~~s~~~~~l~sgs~--Dg~I~i--wdl~~~~~v~~l~~~h-----~~~~V~~l~~sp~~~----- 432 (556)
. ......++++|||++++.+.. +..+.+ +|+.+ +.++..+. +.+.-.-++.++++.
T Consensus 115 ~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd 191 (368)
T 1mda_H 115 PDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASCFHIHPGAAATHYLGSCPASLAASD 191 (368)
T ss_dssp TTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSCCCCEEEETTEEECCCCTTSCEEEE
T ss_pred CCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCceEEccCCCeEEEEEcCCCCEEEEE
Confidence 2 123457899999998888764 467888 99876 33332200 000001122222222
Q ss_pred --------------------------------eEEEEeecCcCCCCeEEEEEeCC---cEEEEeec-----------CCC
Q psy10778 433 --------------------------------EIASVLQTTKTGGSILRLHTINA---QLITSLAS-----------ELR 466 (556)
Q Consensus 433 --------------------------------~i~s~s~~~~~~d~~I~iwdi~g---~~i~~~~~-----------~~~ 466 (556)
.++..+ . +.+.+.|+.+ +.+..+.. ...
T Consensus 192 ~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs-----~-~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g 265 (368)
T 1mda_H 192 LAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAV-----A-SSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp CCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECB-----S-SCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred CccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEc-----C-CEEEEEECCCCcceEEEEEEeccccccccccccCc
Confidence 222222 3 5566666642 12222211 111
Q ss_pred eEEEEEeeCCCCCcceEEEEEeC---------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-EEEEEc-CCCc
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHS---------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-HLYASN-TEGL 535 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~---------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs-~Dg~ 535 (556)
...++++ +++ +.+.++.. ++.+.++|+.+++.+..+..+ ....+++|++||+ .+++.. .++.
T Consensus 266 ~~~v~~s--~dg---~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg--~~p~gi~~s~Dg~~l~va~~~~~~~ 338 (368)
T 1mda_H 266 FQMVAKL--KNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG--HDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp SSCEEEE--TTT---TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE--EEECEEEECCSSSCEEEEEETTTTE
T ss_pred ceeeEEc--CCC---CEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECC--CCcceEEECCCCCEEEEEccCCCCe
Confidence 1226788 887 55554432 235669999999999998743 3689999999997 566666 5899
Q ss_pred EEEEEcCCCCCcCeee
Q psy10778 536 VIIWESSSHNRTPKFL 551 (556)
Q Consensus 536 V~vwdl~~~~~~~~~~ 551 (556)
|.++|+.+.+.+.++.
T Consensus 339 VsVID~~t~kvv~~I~ 354 (368)
T 1mda_H 339 LDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEESSSCEEEEECC
T ss_pred EEEEECCCCcEEEEEE
Confidence 9999999987665553
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.88 E-value=2.3e-07 Score=102.99 Aligned_cols=244 Identities=10% Similarity=0.096 Sum_probs=152.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC-CCC---ceEEEEEcCCCCEEEEEe------CCCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP-LGA---TIATATTAPDCHTLWLGL------TSGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~-h~~---~V~~i~~s~dg~~l~tgs------~Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.+..++.|+.|..+|.++++.+-..... +.. .+.+.-...++ .+++++ .+|.|+.||..++...-....
T Consensus 123 ~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g-~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 201 (689)
T 1yiq_A 123 KVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNG-KVVIGNGGAEFGVRGYVTAYDAETGKEAWRFYT 201 (689)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETT-EEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECC-EEEEEeCCCccCCCCEEEEEECCCCcEEEEecc
Confidence 6777889999999999999877665543 211 11110001144 445543 368899988877621100000
Q ss_pred --cCCCeE------------e--------eCCCccEEEEEEccCCCEEEEEcCCCc-------------------EEEEe
Q psy10778 365 --CKPPTI------------L--------LGHSACVTDLYLCAGFSVAVSSSEDGT-------------------CLLWD 403 (556)
Q Consensus 365 --~~~~~~------------l--------~~h~~~V~~l~~s~~~~~l~sgs~Dg~-------------------I~iwd 403 (556)
..+... . .++...-..++++++..+++.++.++. |..+|
T Consensus 202 ~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD 281 (689)
T 1yiq_A 202 VPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVN 281 (689)
T ss_dssp SCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEE
T ss_pred cCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEE
Confidence 000000 0 011111125788888889999888764 99999
Q ss_pred CCCCeEEEEeCCC-CC------CCCeeEEEEeCCCC---eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC--C----
Q psy10778 404 INTIGYIREIPCV-DP------NTPVSHVTMSETNG---EIASVLQTTKTGGSILRLHTIN-AQLITSLASEL--R---- 466 (556)
Q Consensus 404 l~~~~~v~~l~~~-h~------~~~V~~l~~sp~~~---~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~--~---- 466 (556)
..+|+.+..+... |+ ..++.......+|+ .++.++ .+|.++++|.+ |+++....... .
T Consensus 282 ~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~-----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~ 356 (689)
T 1yiq_A 282 ADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAP-----KNGFFYVIDRATGELLSAKGIVPQSWTKGM 356 (689)
T ss_dssp TTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECC-----TTSEEEEEETTTCCEEEEEESSCCSSEEEE
T ss_pred ccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEEC-----CCCeEEEEECCCCCEecccccccccccccc
Confidence 9999988766431 20 01222222233454 566666 89999999986 88875432111 0
Q ss_pred ----------------------------------eEEEEEeeCCCCCcceEEEEEeC-----------------------
Q psy10778 467 ----------------------------------ITSVTFSNAPEGVSQNVIVTGHS----------------------- 489 (556)
Q Consensus 467 ----------------------------------i~~i~~s~~pdg~~~~~l~tg~~----------------------- 489 (556)
-..++++ |+. .+++++..
T Consensus 357 ~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~d--p~~---~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~ 431 (689)
T 1yiq_A 357 DMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYN--PDT---GLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQ 431 (689)
T ss_dssp ETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEE--TTT---TEEEEEEEECCEEEECCSSCCCCCSCTTSCC
T ss_pred CccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceEC--CCC---CEEEEeccccceeeeeccccccccccccccc
Confidence 1125777 655 45655421
Q ss_pred ----------------------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 490 ----------------------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 490 ----------------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+|.|+.||+.+++.+..+.. ..++..-.++..+.++++|+.||.++.||.++++.+
T Consensus 432 ~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~g~~~tagglvf~gt~dg~l~a~D~~tG~~l 509 (689)
T 1yiq_A 432 LGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPY--VTIFNGGTLSTAGNLVFEGSADGRVIAYAADTGEKL 509 (689)
T ss_dssp CSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred cCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccC--CCCccCccceECCCEEEEECCCCcEEEEECCCCccc
Confidence 37899999999999988873 234444466777889999999999999999999887
Q ss_pred Ceee
Q psy10778 548 PKFL 551 (556)
Q Consensus 548 ~~~~ 551 (556)
..+.
T Consensus 510 w~~~ 513 (689)
T 1yiq_A 510 WEQP 513 (689)
T ss_dssp EEEE
T ss_pred eeee
Confidence 6664
|
| >2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.86 E-value=1.5e-10 Score=118.92 Aligned_cols=186 Identities=15% Similarity=0.093 Sum_probs=105.2
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP 414 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~ 414 (556)
++..+++++.||.|+.||..++ +.+..+.. +.+.+..+..++..+++++.||.|+.||..+|+.+..+.
T Consensus 8 ~~~~v~~gs~dg~v~a~d~~tG---------~~~W~~~~--~~~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~ 76 (369)
T 2hz6_A 8 PETLLFVSTLDGSLHAVSKRTG---------SIKWTLKE--DPVLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLP 76 (369)
T ss_dssp CTTEEEEEETTSEEEEEETTTC---------CEEEEEEC--CCSCCCC-----CCEEECTTTCCEEEC-----CCSEECS
T ss_pred eCCEEEEEcCCCEEEEEECCCC---------CEEEEecC--CCceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeee
Confidence 5678999999999999998876 33344443 444445555677788888999999999999988777665
Q ss_pred CCCCCC-Cee-EEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC
Q psy10778 415 CVDPNT-PVS-HVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG 491 (556)
Q Consensus 415 ~~h~~~-~V~-~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg 491 (556)
. + .. .+. ...+. .++.+++++ .++.|+.||.+ |+.+..+..... ..++ |++ ..+++++.++
T Consensus 77 ~-~-~~~~~~~sp~~~-~~~~v~~g~-----~dg~v~a~D~~tG~~~w~~~~~~~---~~~~--p~~---~~v~~~~~dg 140 (369)
T 2hz6_A 77 F-T-IPELVQASPCRS-SDGILYMGK-----KQDIWYVIDLLTGEKQQTLSSAFA---DSLS--PST---SLLYLGRTEY 140 (369)
T ss_dssp C-C-HHHHHTTCSCC------CCCCE-----EEEEEEEECCC------------------------------EEEEEEEE
T ss_pred c-c-CccccccCceEe-cCCEEEEEe-----CCCEEEEEECCCCcEEEEecCCCc---cccc--ccC---CEEEEEecCC
Confidence 4 2 11 110 11111 345666666 68899999997 888776654332 3345 556 6888999999
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC---CEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 492 TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS---QHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg---~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
.|+.||..+++.+..+.. + .....+++.+. ..+++++.||.|+.||..+++.+..+
T Consensus 141 ~v~a~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~W~~ 199 (369)
T 2hz6_A 141 TITMYDTKTRELRWNATY-F--DYAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVLWIQ 199 (369)
T ss_dssp EEECCCSSSSSCCCEEEE-E--EECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEEEEE
T ss_pred EEEEEECCCCCEEEeEec-c--cccCccccCCccccceEEEECCCCEEEEEECCCCcEEEEe
Confidence 999999999987666541 1 11222333332 45777888999999999988765443
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.83 E-value=4e-07 Score=100.85 Aligned_cols=229 Identities=14% Similarity=0.109 Sum_probs=153.8
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCC-------------------------------ceEEEEEcCCCCEEEEEeCCC----
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGA-------------------------------TIATATTAPDCHTLWLGLTSG---- 346 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~-------------------------------~V~~i~~s~dg~~l~tgs~Dg---- 346 (556)
+|.|+.+|.++++.+-.+...... ....+++++++..++.++.++
T Consensus 189 ~g~v~a~D~~tG~~~W~~~~~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~ 268 (677)
T 1kb0_A 189 RGYITAYDAETGERKWRWFSVPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWS 268 (677)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCEEEEEECCCCcEEEEeccCCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCcccc
Confidence 799999999999877655432111 112567888888999887664
Q ss_pred ---------------cEEEEEeeeccCcccccccCCCeEeeC--CC-------ccEEEEEEccCC---CEEEEEcCCCcE
Q psy10778 347 ---------------NILVYEYELNASTNKIEFCKPPTILLG--HS-------ACVTDLYLCAGF---SVAVSSSEDGTC 399 (556)
Q Consensus 347 ---------------~I~vwd~~~~~~~~~~~~~~~~~~l~~--h~-------~~V~~l~~s~~~---~~l~sgs~Dg~I 399 (556)
.|..+|..++ +.+..+.. |. .....+....+| ..++.++.+|.+
T Consensus 269 ~~~~~~~~gd~~~~~sv~AlD~~TG---------~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~~~G~l 339 (677)
T 1kb0_A 269 HKVRSPKGGDNLYLASIVALDPDTG---------KYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAPKNGFF 339 (677)
T ss_dssp HHHHSTTCCCCTTTTEEEEECTTTC---------CEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECCTTSEE
T ss_pred CCCCCccCCCCeeeEEEEEEECCCC---------CEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEECCCCEE
Confidence 4777777665 22222221 21 122223334467 689999999999
Q ss_pred EEEeCCCCeEEEEeCCCCCCC----------Ce------------------------eEEEEeCCCCeEEEEeecC----
Q psy10778 400 LLWDINTIGYIREIPCVDPNT----------PV------------------------SHVTMSETNGEIASVLQTT---- 441 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~h~~~----------~V------------------------~~l~~sp~~~~i~s~s~~~---- 441 (556)
.++|..+|+.+..+.. .+.. ++ ..++++|+++.+++.....
T Consensus 340 ~~lD~~tG~~l~~~~~-~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~~yv~~~~~~~~~ 418 (677)
T 1kb0_A 340 FVLDRTNGKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLVYLPAQNVPVNL 418 (677)
T ss_dssp EEEETTTCCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEEEEEEEECCCEE
T ss_pred EEEECCCCCEeccccc-cccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCEEEEeChhcceee
Confidence 9999999998876653 1001 01 1578899988888765310
Q ss_pred --------c--------------------------CCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEE
Q psy10778 442 --------K--------------------------TGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVT 486 (556)
Q Consensus 442 --------~--------------------------~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t 486 (556)
+ ...+.|..||++ |+.+....+...+....+. ..+ .++++
T Consensus 419 ~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~--~~g---~~v~~ 493 (677)
T 1kb0_A 419 MDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT--TAG---NVVFQ 493 (677)
T ss_dssp EECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--ETT---TEEEE
T ss_pred ecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceE--eCC---CEEEE
Confidence 0 012789999997 8888888776655555565 455 57888
Q ss_pred EeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEE-cC----------------CCcEEEEEcCCCC
Q psy10778 487 GHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYAS-NT----------------EGLVIIWESSSHN 545 (556)
Q Consensus 487 g~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sg-s~----------------Dg~V~vwdl~~~~ 545 (556)
++.||.+++||..+++.+.++..++.....-+.+..+|+.+++. +. .+.+.+|.+....
T Consensus 494 g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~~~G~~~~~~~~~~~~~~~~~~~l~~f~l~~~a 569 (677)
T 1kb0_A 494 GTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSVAVGWGGVYGLAARATERQGPGTVYTFVVGGKA 569 (677)
T ss_dssp ECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCEEEEEEETCBC
T ss_pred ECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEEeccCCccccccccccccCCCCeEEEEeccccc
Confidence 99999999999999999999985443333455677888755543 22 3688899987533
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.82 E-value=2.5e-07 Score=92.17 Aligned_cols=218 Identities=10% Similarity=0.012 Sum_probs=147.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..|+.++.|..++.. ++...... .+...+.++...+++. ++.|+.++.|..++.. + +........
T Consensus 109 ~l~v~t~~~~l~~~d~~-g~~~~~~~-~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g---------~~~~~~~~~ 175 (330)
T 3hxj_A 109 ILYVTSMDGHLYAINTD-GTEKWRFK-TKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-G---------TEKWRFKTN 175 (330)
T ss_dssp EEEEECTTSEEEEECTT-SCEEEEEE-CSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-S---------CEEEEEECS
T ss_pred EEEEEecCCEEEEEcCC-CCEEEEEc-CCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-C---------CEeEEEecC
Confidence 56667788999999988 65444443 2344456666776765 6667888999998876 4 222333334
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...+.++...+++.+.+ ++ +.+..+| .+++.+..... . ...+.++...+++. |..++ .++.|..+|.+
T Consensus 176 ~~~~~~~~~d~~g~l~v-~t--~~l~~~d-~~g~~~~~~~~-~-~~~~~~~~~~~~g~-l~v~t-----~~~gl~~~~~~ 243 (330)
T 3hxj_A 176 DAITSAASIGKDGTIYF-GS--DKVYAIN-PDGTEKWNFYA-G-YWTVTRPAISEDGT-IYVTS-----LDGHLYAINPD 243 (330)
T ss_dssp SCCCSCCEECTTCCEEE-ES--SSEEEEC-TTSCEEEEECC-S-SCCCSCCEECTTSC-EEEEE-----TTTEEEEECTT
T ss_pred CCceeeeEEcCCCEEEE-Ee--CEEEEEC-CCCcEEEEEcc-C-CcceeceEECCCCe-EEEEc-----CCCeEEEECCC
Confidence 45566777777777544 44 8899999 77777777765 4 56788888888765 44555 67788888877
Q ss_pred CcEEEEeecCC-CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 AQLITSLASEL-RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 g~~i~~~~~~~-~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
++.+....... .+.++... +++ .|.+++.+|.|..+|. +++.+..+. .....+.++..+++|+ |..++.+
T Consensus 244 g~~~~~~~~~~~~~~~~~~~--~~g----~l~v~t~~ggl~~~d~-~g~~~~~~~-~~~~~~~~~~~d~~g~-l~~gt~~ 314 (330)
T 3hxj_A 244 GTEKWRFKTGKRIESSPVIG--NTD----TIYFGSYDGHLYAINP-DGTEKWNFE-TGSWIIATPVIDENGT-IYFGTRN 314 (330)
T ss_dssp SCEEEEEECSSCCCSCCEEC--TTS----CEEEECTTCEEEEECT-TSCEEEEEE-CSSCCCSCCEECTTCC-EEEECTT
T ss_pred CCEeEEeeCCCCccccceEc--CCC----eEEEecCCCCEEEECC-CCcEEEEEE-cCCccccceEEcCCCE-EEEEcCC
Confidence 88776665432 33445554 555 5778888889999996 788777776 3345677777777776 5568899
Q ss_pred CcEEEEEcCCCCC
Q psy10778 534 GLVIIWESSSHNR 546 (556)
Q Consensus 534 g~V~vwdl~~~~~ 546 (556)
|.+++...+..+.
T Consensus 315 G~~~~~~~~~~~~ 327 (330)
T 3hxj_A 315 GKFYALFNLEHHH 327 (330)
T ss_dssp SCEEEEEC-----
T ss_pred CeEEEEecccccc
Confidence 9999988766443
|
| >3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A* | Back alignment and structure |
|---|
Probab=98.82 E-value=1.2e-07 Score=105.47 Aligned_cols=200 Identities=14% Similarity=0.068 Sum_probs=128.5
Q ss_pred CCCCceEEEEEcCCCCEEEEE-----eCCCcEEEEEeeeccCcccccccCCCeEeeCCCcc--EEEEEEccCCCEEEEEc
Q psy10778 322 PLGATIATATTAPDCHTLWLG-----LTSGNILVYEYELNASTNKIEFCKPPTILLGHSAC--VTDLYLCAGFSVAVSSS 394 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tg-----s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~--V~~l~~s~~~~~l~sgs 394 (556)
+|...+..++|||||++||.+ +...+|++||+.++ +.+. .+... ...++|+ |++.|+.++
T Consensus 126 ~~~~~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg---------~~~~---~~~~~~k~~~~~Ws-Dg~~l~y~~ 192 (693)
T 3iuj_A 126 DGTTALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESK---------QPLE---TPLKDVKFSGISWL-GNEGFFYSS 192 (693)
T ss_dssp TSCCEEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTC---------SEEE---EEEEEEESCCCEEE-TTTEEEEEE
T ss_pred CCcEEEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCC---------CCCc---cccCCceeccEEEe-CCCEEEEEE
Confidence 355578899999999998854 33357999999876 1111 12222 2567899 999888888
Q ss_pred CCCc-------------EEEEeCCCCeE--EEEeCCCCC--CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-C-
Q psy10778 395 EDGT-------------CLLWDINTIGY--IREIPCVDP--NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-A- 455 (556)
Q Consensus 395 ~Dg~-------------I~iwdl~~~~~--v~~l~~~h~--~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g- 455 (556)
.+.. |.+|++.+... ...+.. .. ......+.++|||++|+....... ..+.|+++|++ +
T Consensus 193 ~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~-~~~~~~~~~~~~~SpDg~~l~~~~~~~~-~~~~i~~~d~~~~~ 270 (693)
T 3iuj_A 193 YDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGA-IPAQHHRYVGATVTEDDRFLLISAANST-SGNRLYVKDLSQEN 270 (693)
T ss_dssp SSCCC-------CCCCEEEEEETTSCGGGCEEEESC-SGGGCCSEEEEEECTTSCEEEEEEESSS-SCCEEEEEETTSTT
T ss_pred ecCcccccccccCCCcEEEEEECCCCcccceEEEec-CCCCCeEEEEEEEcCCCCEEEEEEccCC-CCcEEEEEECCCCC
Confidence 7743 99999987642 333333 20 234678999999999876653221 33689999986 3
Q ss_pred -cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC---CeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 456 -QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD---GTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 456 -~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d---g~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
+.............. ++ ++|. .++++...+ +.|..+|+.++.. ...+. .+...+. .|+++++.|+.
T Consensus 271 ~~~~~l~~~~~~~~~~-~~--~~g~--~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~-~~~~~~~--~~s~~g~~lv~ 342 (693)
T 3iuj_A 271 APLLTVQGDLDADVSL-VD--NKGS--TLYLLTNRDAPNRRLVTVDAANPGPAHWRDLI-PERQQVL--TVHSGSGYLFA 342 (693)
T ss_dssp CCCEEEECSSSSCEEE-EE--EETT--EEEEEECTTCTTCEEEEEETTSCCGGGCEEEE-CCCSSCE--EEEEETTEEEE
T ss_pred CceEEEeCCCCceEEE-Ee--ccCC--EEEEEECCCCCCCEEEEEeCCCCCccccEEEe-cCCCCEE--EEEEECCEEEE
Confidence 333333344444444 55 4442 555555543 6899999977653 23444 3444454 88999988776
Q ss_pred EcC-CC--cEEEEEcCCC
Q psy10778 530 SNT-EG--LVIIWESSSH 544 (556)
Q Consensus 530 gs~-Dg--~V~vwdl~~~ 544 (556)
... +| .|++|++..+
T Consensus 343 ~~~~~g~~~l~~~d~~g~ 360 (693)
T 3iuj_A 343 EYMVDATARVEQFDYEGK 360 (693)
T ss_dssp EEEETTEEEEEEECTTSC
T ss_pred EEEECCeeEEEEEECCCC
Confidence 654 44 6889988753
|
| >1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida} | Back alignment and structure |
|---|
Probab=98.82 E-value=1e-06 Score=97.83 Aligned_cols=233 Identities=12% Similarity=0.080 Sum_probs=152.6
Q ss_pred CCCeEEEEeCCCCCCcceEcCCC-C-----------------------------CceEEEEEcCCCCEEEEEeCCCc---
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPL-G-----------------------------ATIATATTAPDCHTLWLGLTSGN--- 347 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h-~-----------------------------~~V~~i~~s~dg~~l~tgs~Dg~--- 347 (556)
.+|.|+.+|.++++.+-.+.... . ..-..+++++++..++.++.++.
T Consensus 181 ~~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~ 260 (689)
T 1yiq_A 181 VRGYVTAYDAETGKEAWRFYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWD 260 (689)
T ss_dssp CBCEEEEEETTTCCEEEEEESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSC
T ss_pred CCCEEEEEECCCCcEEEEecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccc
Confidence 37899999999998766554211 0 00125778888899999987764
Q ss_pred ----------------EEEEEeeeccCcccccccCCCeEeeC--C-------CccEEEEEEccCCC---EEEEEcCCCcE
Q psy10778 348 ----------------ILVYEYELNASTNKIEFCKPPTILLG--H-------SACVTDLYLCAGFS---VAVSSSEDGTC 399 (556)
Q Consensus 348 ----------------I~vwd~~~~~~~~~~~~~~~~~~l~~--h-------~~~V~~l~~s~~~~---~l~sgs~Dg~I 399 (556)
|..+|..++ +.+-.+.. | ..+........+|+ .++.++.+|.+
T Consensus 261 ~~~~~~~~gd~~y~~~v~AlD~~TG---------~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l 331 (689)
T 1yiq_A 261 PKWRSQAKGDNLFLSSIVAVNADTG---------EYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFF 331 (689)
T ss_dssp HHHHHTTCSCCTTTTEEEEEETTTC---------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEE
T ss_pred cCCCCCCCCCceeeeeEEEEEccCC---------ceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeE
Confidence 888888876 22222221 2 12222223333564 78899999999
Q ss_pred EEEeCCCCeEEEEeCCCCCCC--------------------------------------CeeEEEEeCCCCeEEEEeecC
Q psy10778 400 LLWDINTIGYIREIPCVDPNT--------------------------------------PVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~h~~~--------------------------------------~V~~l~~sp~~~~i~s~s~~~ 441 (556)
+++|..+|+.+..... .+.. .-..++++|+.+.+++.....
T Consensus 332 ~~lD~~tG~~l~~~~~-~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~~yv~~~~~ 410 (689)
T 1yiq_A 332 YVIDRATGELLSAKGI-VPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNPDTGLVYIPAHIM 410 (689)
T ss_dssp EEEETTTCCEEEEEES-SCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEEC
T ss_pred EEEECCCCCEeccccc-cccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECCCCCEEEEecccc
Confidence 9999999998754332 1000 012378899888887764320
Q ss_pred ----------------------c------------------CCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCc
Q psy10778 442 ----------------------K------------------TGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 442 ----------------------~------------------~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~ 480 (556)
+ ..++.|+.||++ |+.+.............+. ..+
T Consensus 411 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~--tag-- 486 (689)
T 1yiq_A 411 SAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFNGGTLS--TAG-- 486 (689)
T ss_dssp CEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--ETT--
T ss_pred ceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCccCccce--ECC--
Confidence 0 013789999997 8888888765555444555 445
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc-C--------------------CCcEEEE
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN-T--------------------EGLVIIW 539 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs-~--------------------Dg~V~vw 539 (556)
.++++|+.||.++.||..+|+.+.++..++.....-+.|..+|+..++.. . .+.+.+|
T Consensus 487 -glvf~gt~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~ty~~~G~qyv~~~~G~gg~~~~~~~~~~~~~~~~~g~~~~~f 565 (689)
T 1yiq_A 487 -NLVFEGSADGRVIAYAADTGEKLWEQPAASGVMAAPVTYSVDGEQYVTFMAGWGGAFSTFAGALSLRAGVQPYAQVLTY 565 (689)
T ss_dssp -TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCTTHHHHTHHHHGGGCCCCCCEEEEE
T ss_pred -CEEEEECCCCcEEEEECCCCccceeeeCCCCcccCceEEEECCEEEEEEEecCCccccccccccccccccCCCceEEEe
Confidence 68899999999999999999999998754333334467788887554422 1 2367888
Q ss_pred EcCCCCCcC
Q psy10778 540 ESSSHNRTP 548 (556)
Q Consensus 540 dl~~~~~~~ 548 (556)
.+......|
T Consensus 566 ~l~~~~~~p 574 (689)
T 1yiq_A 566 KLGGTAKLQ 574 (689)
T ss_dssp EETCCCCCC
T ss_pred ecCCccccc
Confidence 887654433
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.82 E-value=5.1e-08 Score=103.89 Aligned_cols=228 Identities=10% Similarity=0.029 Sum_probs=164.4
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEE-c-CCCCEEEEEeC------------------CCcEEEEEe
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATT-A-PDCHTLWLGLT------------------SGNILVYEY 353 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~-s-~dg~~l~tgs~------------------Dg~I~vwd~ 353 (556)
.+.+....++.|.+.|+.+.+...++..........+++ + |+++++++++. ++.+.+.|.
T Consensus 103 ~lfVnd~~~~rVavIdl~t~~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~ 182 (595)
T 1fwx_A 103 FLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDA 182 (595)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEET
T ss_pred EEEEEcCCCCEEEEEECCCceEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEEC
Confidence 366677788899999999988777666555567889988 4 89999999852 356788887
Q ss_pred eeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC------------------------------------
Q psy10778 354 ELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG------------------------------------ 397 (556)
Q Consensus 354 ~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg------------------------------------ 397 (556)
.+. +...++.--. .-..++++|+|+++++.+.+.
T Consensus 183 ~t~---------~v~~qI~Vgg-~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~ 252 (595)
T 1fwx_A 183 DKW---------EVAWQVLVSG-NLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQE 252 (595)
T ss_dssp TTT---------EEEEEEEESS-CCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEE
T ss_pred CCC---------eEEEEEEeCC-CccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeE
Confidence 654 2223333111 334577889999888777442
Q ss_pred --cEEEEeCCC--CeE-EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-------------EEE
Q psy10778 398 --TCLLWDINT--IGY-IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ-------------LIT 459 (556)
Q Consensus 398 --~I~iwdl~~--~~~-v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-------------~i~ 459 (556)
.|.|.|..+ ++. ++.+.. .....++.++|||+++++++. .+.+|.++|++.. .+.
T Consensus 253 i~~V~VID~~~~~~~~~~~~Ipv---g~~PhGv~~sPDGk~v~V~~~----~s~~VsVid~~~~~~~~~~~l~~~~~v~~ 325 (595)
T 1fwx_A 253 LNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGK----LSPTVTVLDVTRFDAVFYENADPRSAVVA 325 (595)
T ss_dssp ETTEEEEECSGGGCCSSEEEEEE---ESSCCCEEECTTSSEEEEECT----TSSBEEEEEGGGHHHHHHSCCCGGGGEEE
T ss_pred ECcEEEEeCcccCCceeEEEEec---CCCceEEEEcCCCCEEEEeCC----CCCeEEEEECcccccccccccCcccceEE
Confidence 477888887 444 566654 455678999999999988875 6789999999732 556
Q ss_pred EeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----------CeEEEEecCCCCCCe-----EEEEEecCC
Q psy10778 460 SLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----------LAHLLTLNTNVALPV-----IAVTYSCDS 524 (556)
Q Consensus 460 ~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----------~~~~~~~~~~h~~~V-----~~l~~s~dg 524 (556)
..........++|+ ++| +..++...|+.|.+||+.. .+.+.++. .|-.+- .++.++|||
T Consensus 326 ~v~vG~gP~h~aF~--~dG---~aY~t~~ldsqV~kwdi~~a~~~~~g~~~~~vi~kid-V~yqpGh~~~~~g~t~~~DG 399 (595)
T 1fwx_A 326 EPELGLGPLHTAFD--GRG---NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHYQPGHLKTVMGETLDATN 399 (595)
T ss_dssp CCBCCSCEEEEEEC--TTS---EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSSCEEEEEETTTTSTTCCS
T ss_pred EcCCCCCcceEEEC--CCC---eEEEEEecCCcEEEEEhhHhhhhhcccccceeEEEee-cccccccceeccceEeCCCC
Confidence 66667889999999 898 7778888999999999876 56777777 343321 223558999
Q ss_pred CEEEEEcCCC--cE-----------EEEEcCCC
Q psy10778 525 QHLYASNTEG--LV-----------IIWESSSH 544 (556)
Q Consensus 525 ~~l~sgs~Dg--~V-----------~vwdl~~~ 544 (556)
++|+++..-. ++ .++|+..+
T Consensus 400 k~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~ 432 (595)
T 1fwx_A 400 DWLVCLSKFSKDRFLNVGPLKPENDQLIDISGD 432 (595)
T ss_dssp SEEEEEESCCTTSSCCCCSSCCEEEEEEECSSS
T ss_pred CEEEEcCCCCccccccCCCCCCCcceEEEcCCC
Confidence 9999876422 33 78898543
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.82 E-value=6.9e-07 Score=92.15 Aligned_cols=224 Identities=16% Similarity=0.078 Sum_probs=147.5
Q ss_pred cceEEeccCCCeEEEEeCCCCC----CcceEc---C---CCCCceEEEEEcCCCCEEEEEeCC------CcEEEEEeeec
Q psy10778 293 AGMICWNECDNLIRLKMSKELP----ATPVIR---P---PLGATIATATTAPDCHTLWLGLTS------GNILVYEYELN 356 (556)
Q Consensus 293 ~~~l~~gs~Dg~I~lw~~~~~~----~~~~~~---~---~h~~~V~~i~~s~dg~~l~tgs~D------g~I~vwd~~~~ 356 (556)
+.+++.|..++.|.++|..+.+ ....++ . .....-..+...|+| .++++..+ |.|.++|..+.
T Consensus 96 ~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~~T~ 174 (462)
T 2ece_A 96 RFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDHYSF 174 (462)
T ss_dssp CEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECTTTC
T ss_pred CEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEECCCC
Confidence 3478888999999999997652 233331 0 011134556788999 77776655 78999998765
Q ss_pred cCcccccccCCCeEeeC--CC-ccEEEEEEccCCCEEEEEc-------------------CCCcEEEEeCCCCeEEEEeC
Q psy10778 357 ASTNKIEFCKPPTILLG--HS-ACVTDLYLCAGFSVAVSSS-------------------EDGTCLLWDINTIGYIREIP 414 (556)
Q Consensus 357 ~~~~~~~~~~~~~~l~~--h~-~~V~~l~~s~~~~~l~sgs-------------------~Dg~I~iwdl~~~~~v~~l~ 414 (556)
+.+..+.. .. .--..+.|+|+++.+++.. .+.+|.+||+.+++.+.++.
T Consensus 175 ---------~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~ 245 (462)
T 2ece_A 175 ---------EPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLT 245 (462)
T ss_dssp ---------CEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEE
T ss_pred ---------eEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEe
Confidence 33344431 11 2234588899999888874 36899999999998888887
Q ss_pred CCCCCCCeeEEEE--eCCCCeEEEEee-cCcCCCCeEEEEEeC-CcE--EEEe--ec-----------------CCCeEE
Q psy10778 415 CVDPNTPVSHVTM--SETNGEIASVLQ-TTKTGGSILRLHTIN-AQL--ITSL--AS-----------------ELRITS 469 (556)
Q Consensus 415 ~~h~~~~V~~l~~--sp~~~~i~s~s~-~~~~~d~~I~iwdi~-g~~--i~~~--~~-----------------~~~i~~ 469 (556)
..........+.| +|++++..+++. +....+++|.+|..+ |+. ...+ .. ......
T Consensus 246 vg~~g~~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~ 325 (462)
T 2ece_A 246 LGEENRMALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTD 325 (462)
T ss_dssp SCTTEEEEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCC
T ss_pred cCCCCCccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeE
Confidence 6100134556666 999998888872 000024577776654 321 1111 00 245678
Q ss_pred EEEeeCCCCCcceEEEEEe-CCCeEEEEeCC---CCeEEEEecCCCC-------------CCeEEEEEecCCCEEEEEc
Q psy10778 470 VTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY---KLAHLLTLNTNVA-------------LPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 470 i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~---~~~~~~~~~~~h~-------------~~V~~l~~s~dg~~l~sgs 531 (556)
|.+| +|| ++|.++. ..+.|.++|+. +.+.+..+..+-. .....++++|||++|+++.
T Consensus 326 I~lS--~DG---rfLYVSnrg~d~VavfdV~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN 399 (462)
T 2ece_A 326 IDIS--LDD---KFLYLSLWGIGEVRQYDISNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN 399 (462)
T ss_dssp EEEC--TTS---CEEEEEETTTTEEEEEECSSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred EEEC--CCC---CEEEEEeCCCCEEEEEEecCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence 9999 899 6776665 57899999985 3466777764211 1368899999999999988
|
| >1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.79 E-value=1.8e-07 Score=103.54 Aligned_cols=244 Identities=11% Similarity=0.072 Sum_probs=156.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC-CC---CceEEEEEcCCCCEEEEEeC------CCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP-LG---ATIATATTAPDCHTLWLGLT------SGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~-h~---~~V~~i~~s~dg~~l~tgs~------Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.+..++.|+.|..+|.++++.+-..... .. ..+.+.-.. .+..+++++. +|.|+.+|..++...-....
T Consensus 130 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v-~~~~v~v~~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 130 KVYVGAWDGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRV-FKGKVIIGNGGAEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEE-ETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEE-ECCEEEEEecccccCCCCEEEEEECCCCcEEEEecc
Confidence 6777788999999999999887666533 10 112111111 1345555543 68899999876621100000
Q ss_pred cCCC--e------------Eee---------CCCccEEEEEEccCCCEEEEEcCCC-------------------cEEEE
Q psy10778 365 CKPP--T------------ILL---------GHSACVTDLYLCAGFSVAVSSSEDG-------------------TCLLW 402 (556)
Q Consensus 365 ~~~~--~------------~l~---------~h~~~V~~l~~s~~~~~l~sgs~Dg-------------------~I~iw 402 (556)
.... . ... +.......+++++++.+++.++.++ +|..+
T Consensus 209 ~~~~~~~~~~~~~~~~g~~~w~~~g~~~~~~~g~~~w~~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~Al 288 (677)
T 1kb0_A 209 VPGDPSKPFEDESMKRAARTWDPSGKWWEAGGGGTMWDSMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVAL 288 (677)
T ss_dssp SCCCTTSCCSSHHHHHHHTTSCGGGCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred CCCCccccccccccccccccccccCceeEeCCCcccccceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEE
Confidence 0000 0 000 1111223578888888888887664 59999
Q ss_pred eCCCCeEEEEeCCC-CC------CCCeeEEEEeCCC---CeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC------
Q psy10778 403 DINTIGYIREIPCV-DP------NTPVSHVTMSETN---GEIASVLQTTKTGGSILRLHTIN-AQLITSLASEL------ 465 (556)
Q Consensus 403 dl~~~~~v~~l~~~-h~------~~~V~~l~~sp~~---~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~------ 465 (556)
|..+|+.+..+... |+ ......+....+| +.++.++ .+|.++++|.. |+++.......
T Consensus 289 D~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~~~~l~~~~-----~~G~l~~lD~~tG~~l~~~~~~~~~~~~~ 363 (677)
T 1kb0_A 289 DPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKPRKVILHAP-----KNGFFFVLDRTNGKFISAKNFVPVNWASG 363 (677)
T ss_dssp CTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEEEEEEEECC-----TTSEEEEEETTTCCEEEEEESSCCSSEEE
T ss_pred ECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcEeeEEEEEC-----CCCEEEEEECCCCCEeccccccccCcccc
Confidence 99999988765431 20 0122233334466 5677776 89999999996 88887664211
Q ss_pred ------Ce------------------------EEEEEeeCCCCCcceEEEEEeC--------------------------
Q psy10778 466 ------RI------------------------TSVTFSNAPEGVSQNVIVTGHS-------------------------- 489 (556)
Q Consensus 466 ------~i------------------------~~i~~s~~pdg~~~~~l~tg~~-------------------------- 489 (556)
.+ ..++++ |++ .+++++..
T Consensus 364 ~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d--p~~---~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~ 438 (677)
T 1kb0_A 364 YDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN--PQT---GLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGT 438 (677)
T ss_dssp ECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE--TTT---TEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGG
T ss_pred cCCCCceeeccccCcCCCccEECcCcccccCCCCceEc--CCC---CEEEEeChhcceeeeccccccccccccccccccc
Confidence 01 146777 666 56666432
Q ss_pred -----------------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 490 -----------------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 490 -----------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.|.|..||+.+++.+.++. +..++.+..++.++..+++++.||.+++||..+++.+..+.
T Consensus 439 ~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~--~~~~~~~g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~ 515 (677)
T 1kb0_A 439 GWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVE--HVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAP 515 (677)
T ss_dssp TCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEE--ESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccccccccccccCCCCCccEEEEEeCCCCcEEeecC--CCCCCcCcceEeCCCEEEEECCCCcEEEEECCCCceeeeee
Confidence 2789999999999998887 33455566677788899999999999999999988876664
|
| >3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=98.78 E-value=6.7e-07 Score=88.66 Aligned_cols=200 Identities=9% Similarity=-0.024 Sum_probs=130.5
Q ss_pred CCCceEEEEEcCCCC-EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 323 LGATIATATTAPDCH-TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 323 h~~~V~~i~~s~dg~-~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
........+|+++|+ +++++..++.|..|+.. + ....+..+...+.+++++++|+++++...++.|.+
T Consensus 43 ~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~~-g----------~~~~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~ 111 (305)
T 3dr2_A 43 QATWSEGPAWWEAQRTLVWSDLVGRRVLGWRED-G----------TVDVLLDATAFTNGNAVDAQQRLVHCEHGRRAITR 111 (305)
T ss_dssp CCSSEEEEEEEGGGTEEEEEETTTTEEEEEETT-S----------CEEEEEESCSCEEEEEECTTSCEEEEETTTTEEEE
T ss_pred CCcCccCCeEeCCCCEEEEEECCCCEEEEEeCC-C----------CEEEEeCCCCccceeeECCCCCEEEEECCCCEEEE
Confidence 334567899999998 66777778899999763 2 12445556677899999999997777777788999
Q ss_pred EeCCCCeEEEEeCCC--CCCCCeeEEEEeCCCCeEEE----EeecC--------cCCCCeEEEEEeC-CcEEEEeecCCC
Q psy10778 402 WDINTIGYIREIPCV--DPNTPVSHVTMSETNGEIAS----VLQTT--------KTGGSILRLHTIN-AQLITSLASELR 466 (556)
Q Consensus 402 wdl~~~~~v~~l~~~--h~~~~V~~l~~sp~~~~i~s----~s~~~--------~~~d~~I~iwdi~-g~~i~~~~~~~~ 466 (556)
|+.. ++........ .....+..++++++|..+++ +.... ....+.|..+|.. ++..... ....
T Consensus 112 ~~~~-g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~ 189 (305)
T 3dr2_A 112 SDAD-GQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDH 189 (305)
T ss_dssp ECTT-SCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESS
T ss_pred ECCC-CCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCC
Confidence 9986 5533222110 10234678999999987775 22000 0013567778874 5443333 4456
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCC------CeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEE
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSD------GTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII 538 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~d------g~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v 538 (556)
...++|+ |++ +.|+++... +.|.+|++..... ...+.......+..++++++|++.+ ++.+ .|.+
T Consensus 190 p~gl~~s--pdg---~~lyv~~~~~~~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv-~~~~-gv~~ 262 (305)
T 3dr2_A 190 PNGLAFS--PDE---QTLYVSQTPEQGHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWS-SSGT-GVCV 262 (305)
T ss_dssp EEEEEEC--TTS---SEEEEEECCC---CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEE-CCSS-EEEE
T ss_pred CcceEEc--CCC---CEEEEEecCCcCCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEE-ecCC-cEEE
Confidence 7889999 898 777766654 7899999865431 1122111234466789999999544 4444 4999
Q ss_pred EEcC
Q psy10778 539 WESS 542 (556)
Q Consensus 539 wdl~ 542 (556)
|+..
T Consensus 263 ~~~~ 266 (305)
T 3dr2_A 263 FDSD 266 (305)
T ss_dssp ECTT
T ss_pred ECCC
Confidence 9874
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.78 E-value=4.7e-06 Score=80.71 Aligned_cols=227 Identities=9% Similarity=-0.035 Sum_probs=141.5
Q ss_pred CeEEEEeCCCCCCc-----ceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 303 NLIRLKMSKELPAT-----PVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 303 g~I~lw~~~~~~~~-----~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
+.|+.+++...... ..+. .....+..+++++++..|+.+ ..++.|.+++.... .....+.....
T Consensus 10 ~~I~~~~~~g~~~~~~~~~~~~~-~~~~~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~---------~~~~~~~~~~~ 79 (267)
T 1npe_A 10 GKIERLPLERNTMKKTEAKAFLH-IPAKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---------EPTTIIRQDLG 79 (267)
T ss_dssp EEEEEEEESSSCBCGGGCEEEEE-EEEEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---------CCEEEECTTCC
T ss_pred CeEEEEEecCcccccccceeeec-CCCCcEEEEEEecCCCEEEEEECCCCEEEEEecCCC---------CcEEEEECCCC
Confidence 46777777654321 1121 112356799999976666555 45678999887643 11122222335
Q ss_pred cEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC
Q psy10778 377 CVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA 455 (556)
Q Consensus 377 ~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g 455 (556)
...++++++++. +.++-...+.|.++++........... . ......++++|+++.|..+.... ..+.|..++++|
T Consensus 80 ~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~-~-~~~P~~i~vd~~~g~lyv~~~~~--~~~~I~~~~~dg 155 (267)
T 1npe_A 80 SPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDT-G-LVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMDG 155 (267)
T ss_dssp CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-S-CSSEEEEEEETTTTEEEEEECCS--SSCEEEEEETTS
T ss_pred CccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEEC-C-CCCccEEEEeeCCCEEEEEECCC--CCcEEEEEecCC
Confidence 678999999755 555556678999999874332222332 1 35678999999877776665200 146898999886
Q ss_pred cEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 456 QLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 456 ~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
.....+. .-.....++++ +++. .++++....+.|.++|.........+. . .....+++.. ++.++++...+
T Consensus 156 ~~~~~~~~~~~~~P~gia~d--~~~~--~lyv~d~~~~~I~~~~~~g~~~~~~~~-~-~~~P~gi~~d-~~~lyva~~~~ 228 (267)
T 1npe_A 156 TNRRILAQDNLGLPNGLTFD--AFSS--QLCWVDAGTHRAECLNPAQPGRRKVLE-G-LQYPFAVTSY-GKNLYYTDWKT 228 (267)
T ss_dssp CCCEEEECTTCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTEEEEEEEEE-C-CCSEEEEEEE-TTEEEEEETTT
T ss_pred CCcEEEEECCCCCCcEEEEc--CCCC--EEEEEECCCCEEEEEecCCCceEEEec-C-CCCceEEEEe-CCEEEEEECCC
Confidence 5444332 23467899999 7651 455666677899999986544333333 2 2345677765 44445555566
Q ss_pred CcEEEEEcCCCCCcCee
Q psy10778 534 GLVIIWESSSHNRTPKF 550 (556)
Q Consensus 534 g~V~vwdl~~~~~~~~~ 550 (556)
+.|.++|..+++.+..+
T Consensus 229 ~~v~~~d~~~g~~~~~i 245 (267)
T 1npe_A 229 NSVIAMDLAISKEMDTF 245 (267)
T ss_dssp TEEEEEETTTTEEEEEE
T ss_pred CeEEEEeCCCCCceEEE
Confidence 89999999886655444
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.78 E-value=2e-07 Score=94.27 Aligned_cols=207 Identities=10% Similarity=-0.001 Sum_probs=135.3
Q ss_pred CceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCccccccc-CCCeEeeCCCccEEEEEEccCCCEEEEEcC-----C
Q psy10778 325 ATIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEFC-KPPTILLGHSACVTDLYLCAGFSVAVSSSE-----D 396 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~~-~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-----D 396 (556)
..+..++++++|+.+++.. .++.++||.+..+ +.... .......+|...+.++++++++++.++-+. +
T Consensus 17 ~~p~~va~~~~g~~~v~~~~~~~~~~~l~~~~~g----~~~~~p~~~~~~~~~~~~p~gv~~d~~g~L~v~D~g~~~~~~ 92 (343)
T 2qe8_A 17 LAPGNITLTPDGRLFLSLHQFYQPEMQVAELTQD----GLIPFPPQSGNAIITFDTVLGIKSDGNGIVWMLDNGNQSKSV 92 (343)
T ss_dssp SCEEEEEECTTSCEEEEECGGGCCSCSEEEEETT----EEEESCCCCSSCCCCCSCEEEEEECSSSEEEEEECHHHHTSC
T ss_pred CCcceEEECCCCCEEEEeCCCCCCceEEEEECCC----CeecCCCcccCcccceeEeeEEEEcCCCcEEEEcCCCCcCCC
Confidence 5688999999999988864 2344677777622 11100 000112356678999999999887666543 5
Q ss_pred CcEEEEeCCCCeEEEEeCCC-----CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-------
Q psy10778 397 GTCLLWDINTIGYIREIPCV-----DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS------- 463 (556)
Q Consensus 397 g~I~iwdl~~~~~v~~l~~~-----h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~------- 463 (556)
+.|.+||+.+++.++.+..+ + ...+..++++++++.+..+.... ..++.|.+||+. ++....+..
T Consensus 93 ~~i~~~d~~tg~~~~~~~~~~~~~~~-~~~~~~v~vd~~~g~~yvtd~~~-~~~~~i~v~d~~~g~~~r~~~~~~~~~~~ 170 (343)
T 2qe8_A 93 PKLVAWDTLNNQLSRVIYLPPPITLS-NSFVNDLAVDLIHNFVYISDPAP-DDKAALIRVDLQTGLAARVLQGYPGIAPE 170 (343)
T ss_dssp CEEEEEETTTTEEEEEEECCTTTSCT-TCCCCEEEEETTTTEEEEEECCS-GGGCEEEEEETTTCCEEEECTTCTTTSCC
T ss_pred CeEEEEECCCCeEEEEEECChhhccc-ccccceEEEecCCCEEEEEcCcc-CCCCeEEEEECCCCCEEEEecCCCccccc
Confidence 78999999999877776530 1 23568999998766665553100 025689999986 665544321
Q ss_pred -----------------------CCCeEEEEEeeCCCCCcceEEEEEeCCC-eEEEEeCC---CCe--------EEEEec
Q psy10778 464 -----------------------ELRITSVTFSNAPEGVSQNVIVTGHSDG-TIQLWSGY---KLA--------HLLTLN 508 (556)
Q Consensus 464 -----------------------~~~i~~i~~s~~pdg~~~~~l~tg~~dg-~I~iwd~~---~~~--------~~~~~~ 508 (556)
...+..++++ |+| +.|+++...+ .+..++.. .+. .+...
T Consensus 171 ~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s--~dg---~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~- 244 (343)
T 2qe8_A 171 DIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLD--AEN---EWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERY- 244 (343)
T ss_dssp SCCCEETTEECBEECTTSCEECCCCCEEEEEEC--TTS---CEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEE-
T ss_pred ccceeECCEEEEeccCCCceeceecccceeEec--cCC---CEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEec-
Confidence 0235889999 888 7777777655 55555431 110 01111
Q ss_pred CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 509 TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 509 ~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
++......++++++|.++++...++.|.+||..++
T Consensus 245 -g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G 279 (343)
T 2qe8_A 245 -SEKPICDGISIDKDHNIYVGDLAHSAIGVITSADR 279 (343)
T ss_dssp -EECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTT
T ss_pred -ccCCCCceEEECCCCCEEEEccCCCeEEEEECCCC
Confidence 12335667899999999999999999999998444
|
| >2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=98.77 E-value=2e-06 Score=88.66 Aligned_cols=202 Identities=15% Similarity=0.072 Sum_probs=132.9
Q ss_pred CCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEee-------CCCccEEEEEEccCCCEEEEEcCC------CcE
Q psy10778 334 PDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILL-------GHSACVTDLYLCAGFSVAVSSSED------GTC 399 (556)
Q Consensus 334 ~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-------~h~~~V~~l~~s~~~~~l~sgs~D------g~I 399 (556)
.++++|++. ..+++|.|+|+.+.....+ ..+++. .....-..+..+|+| +++++..+ |.+
T Consensus 93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~-----~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v 166 (462)
T 2ece_A 93 IERRFLIVPGLRSSRIYIIDTKPNPREPK-----IIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGI 166 (462)
T ss_dssp CCSCEEEEEBTTTCCEEEEECCSCTTSCE-----EEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEE
T ss_pred ccCCEEEEccCCCCeEEEEECCCCCCCce-----eeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeE
Confidence 777777665 5778999999875532222 223331 111244567888999 77776655 789
Q ss_pred EEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCeEEEEeec----------Cc----CCCCeEEEEEeC-CcEEEEeec
Q psy10778 400 LLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGEIASVLQT----------TK----TGGSILRLHTIN-AQLITSLAS 463 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~----------~~----~~d~~I~iwdi~-g~~i~~~~~ 463 (556)
.+.|..+++.+.++... .+..-...+.|+|+++.+++..-. .. ..+.+|.+||++ ++.+.++..
T Consensus 167 ~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~v 246 (462)
T 2ece_A 167 LMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTL 246 (462)
T ss_dssp EEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEES
T ss_pred EEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEec
Confidence 99999999999998740 101223458889999988876310 00 147899999997 677777765
Q ss_pred C---CCeEEEEEeeCCCCCcceEEEEEe------CCCeEEEEeCCCCe--EEEEe--cC----C-----------CCCCe
Q psy10778 464 E---LRITSVTFSNAPEGVSQNVIVTGH------SDGTIQLWSGYKLA--HLLTL--NT----N-----------VALPV 515 (556)
Q Consensus 464 ~---~~i~~i~~s~~pdg~~~~~l~tg~------~dg~I~iwd~~~~~--~~~~~--~~----~-----------h~~~V 515 (556)
. .....+.|...|++ +++.+++ .+++|.+|....++ ....+ .. + .....
T Consensus 247 g~~g~~P~~i~f~~~Pdg---~~aYV~~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~p 323 (462)
T 2ece_A 247 GEENRMALELRPLHDPTK---LMGFINMVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLV 323 (462)
T ss_dssp CTTEEEEEEEEECSSTTC---CEEEEEEEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCC
T ss_pred CCCCCccceeEeeECCCC---CEEEEEEeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCce
Confidence 4 34556667323888 6666655 56688776654433 12221 10 0 02457
Q ss_pred EEEEEecCCCEEEEEcC-CCcEEEEEcCCC
Q psy10778 516 IAVTYSCDSQHLYASNT-EGLVIIWESSSH 544 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~~ 544 (556)
..|.+|+||++|+++.. .+.|.++|+.+.
T Consensus 324 a~I~lS~DGrfLYVSnrg~d~VavfdV~d~ 353 (462)
T 2ece_A 324 TDIDISLDDKFLYLSLWGIGEVRQYDISNP 353 (462)
T ss_dssp CCEEECTTSCEEEEEETTTTEEEEEECSST
T ss_pred eEEEECCCCCEEEEEeCCCCEEEEEEecCC
Confidence 88999999999998776 589999999753
|
| >2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.7e-07 Score=93.29 Aligned_cols=199 Identities=12% Similarity=0.042 Sum_probs=133.3
Q ss_pred CCCCceEEEEEcCCCCEEEEEeC-----CCcEEEEEeeeccCcccccccCCCeEee------CCCccEEEEEEccCCC-E
Q psy10778 322 PLGATIATATTAPDCHTLWLGLT-----SGNILVYEYELNASTNKIEFCKPPTILL------GHSACVTDLYLCAGFS-V 389 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~-----Dg~I~vwd~~~~~~~~~~~~~~~~~~l~------~h~~~V~~l~~s~~~~-~ 389 (556)
.|...+.+++++++|+++++-.. ++.|.+||..++ +.+..+. .+...+..+++++++. .
T Consensus 64 ~~~~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg---------~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~ 134 (343)
T 2qe8_A 64 ITFDTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNN---------QLSRVIYLPPPITLSNSFVNDLAVDLIHNFV 134 (343)
T ss_dssp CCCSCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTT---------EEEEEEECCTTTSCTTCCCCEEEEETTTTEE
T ss_pred cceeEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCC---------eEEEEEECChhhcccccccceEEEecCCCEE
Confidence 45678999999999876665543 578999998755 1122222 2234568899998654 4
Q ss_pred EEEEc---CCCcEEEEeCCCCeEEEEeCCCCC----------------------------CCCeeEEEEeCCCCeEEEEe
Q psy10778 390 AVSSS---EDGTCLLWDINTIGYIREIPCVDP----------------------------NTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 390 l~sgs---~Dg~I~iwdl~~~~~v~~l~~~h~----------------------------~~~V~~l~~sp~~~~i~s~s 438 (556)
.++.+ .++.|.+||+.+++..+.+.. |. ...+..|+++|+++.++.+.
T Consensus 135 yvtd~~~~~~~~i~v~d~~~g~~~r~~~~-~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~ 213 (343)
T 2qe8_A 135 YISDPAPDDKAALIRVDLQTGLAARVLQG-YPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSP 213 (343)
T ss_dssp EEEECCSGGGCEEEEEETTTCCEEEECTT-CTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEE
T ss_pred EEEcCccCCCCeEEEEECCCCCEEEEecC-CCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEe
Confidence 56655 678999999998887776643 20 01357899999998888776
Q ss_pred ecCcCCCCeEEEEEeC----Cc--------EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 439 QTTKTGGSILRLHTIN----AQ--------LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~----g~--------~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
. ..+.+..++.. +. .+...........++++ ++| +++++...++.|.+||..+++....
T Consensus 214 ~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d--~~G---~l~va~~~~~~V~~~d~~~G~~~~~ 284 (343)
T 2qe8_A 214 M----HSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISID--KDH---NIYVGDLAHSAIGVITSADRAYKLL 284 (343)
T ss_dssp S----SCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEEC--TTC---CEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred C----CCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEEC--CCC---CEEEEccCCCeEEEEECCCCCEEEE
Confidence 2 33456555532 11 01112233456778999 888 8999998999999999856664333
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEE
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vw 539 (556)
........+++++++++++++++.+..+.+.+|
T Consensus 285 ~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f 317 (343)
T 2qe8_A 285 VTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPL 317 (343)
T ss_dssp EECGGGSCEEEEEECTTSCEEEEECCGGGSGGG
T ss_pred EECCceecCCeeEECCCCcEEEEeCcccccccc
Confidence 331124568999999999988887765554333
|
| >3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ... | Back alignment and structure |
|---|
Probab=98.74 E-value=3e-07 Score=93.96 Aligned_cols=222 Identities=9% Similarity=-0.012 Sum_probs=147.2
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCeEe
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPTIL 371 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~~l 371 (556)
++.|.+.|..+++.+..+..+.. + . ++++|||++++++. .++.|.+||..+. +.+..+
T Consensus 58 ~~~V~ViD~~t~~v~~~I~vG~~-P-~-va~spDG~~lyVan~~~~r~~~G~~~~~VsviD~~t~---------~v~~~I 125 (386)
T 3sjl_D 58 VTQQFVIDGEAGRVIGMIDGGFL-P-N-PVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---------LPTADI 125 (386)
T ss_dssp SEEEEEEETTTTEEEEEEEECSS-C-E-EEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---------CEEEEE
T ss_pred CCEEEEEECCCCeEEEEEECCCC-C-c-EEECCCCCEEEEEcccccccccCCCCCEEEEEECCCC---------eEEEEE
Confidence 68999999999888887775443 3 3 99999999988875 3678999998876 333443
Q ss_pred eCC-------CccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc
Q psy10778 372 LGH-------SACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 372 ~~h-------~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.-. ...-..++++|||++++.+.. ++.|.++|+.+++.+.++.. .+. ...+....+.+++.+
T Consensus 126 ~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v---~g~--~~~~P~g~~~~~~~~---- 196 (386)
T 3sjl_D 126 ELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV---PDC--YHIFPTAPDTFFMHC---- 196 (386)
T ss_dssp EETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC---CSE--EEEEEEETTEEEEEE----
T ss_pred ECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEEC---CCc--ceeecCCCceeEEEC----
Confidence 211 123456899999998887764 68999999999999999976 231 222333345566666
Q ss_pred CCCCeEEEEEeC--CcEEEEee-c----CCCe-EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe--EEEEec----
Q psy10778 443 TGGSILRLHTIN--AQLITSLA-S----ELRI-TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA--HLLTLN---- 508 (556)
Q Consensus 443 ~~d~~I~iwdi~--g~~i~~~~-~----~~~i-~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~--~~~~~~---- 508 (556)
.||.+.+.++. ++...... . ...+ ....|.+ ++| +++. .+.+|.|++.|+.+.. .+..+.
T Consensus 197 -~DG~~~~v~~~~~g~v~~~~~~~~~~~~~~~~~~~~~~~-~dG---~~~~-vs~~g~V~v~d~~~~~~~v~~~~~~~~~ 270 (386)
T 3sjl_D 197 -RDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQ-KAG---RLVW-PTYTGKIHQIDLSSGDAKFLPAVEALTE 270 (386)
T ss_dssp -TTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEET-TTT---EEEE-EBTTSEEEEEECTTSSCEECCCEESSCH
T ss_pred -CCCCEEEEECCCCCeEEEeecceeccccccccccceeEc-CCC---cEEE-EeCCCEEEEEECCCCcceeecceecccc
Confidence 78888888874 44432211 1 1122 1235542 566 5544 5558999999986553 333332
Q ss_pred ----CC-CCCCeEEEEEecCCCEEEEEcC----------CCcEEEEEcCCCCCcCee
Q psy10778 509 ----TN-VALPVIAVTYSCDSQHLYASNT----------EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 509 ----~~-h~~~V~~l~~s~dg~~l~sgs~----------Dg~V~vwdl~~~~~~~~~ 550 (556)
.+ .......++++++++.++.... .+.|.+.|+++.+.+.++
T Consensus 271 ~~~~~g~~p~g~q~~a~~~~~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i 327 (386)
T 3sjl_D 271 AERADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF 327 (386)
T ss_dssp HHHHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE
T ss_pred ccccccccCCCcceeeECCCCCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE
Confidence 00 1123345778999998888753 257999999998876655
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.73 E-value=2e-06 Score=87.73 Aligned_cols=226 Identities=8% Similarity=-0.013 Sum_probs=141.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCC--------CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPL--------GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h--------~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
.+..++.++.|..+|.++++.+-...... ...+.+.. ..++..+++++.++.|..+|..++ +
T Consensus 55 ~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~~~v~v~~~~g~l~a~d~~tG---------~ 124 (376)
T 3q7m_A 55 VVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGV-TVSGGHVYIGSEKAQVYALNTSDG---------T 124 (376)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEE-EEETTEEEEEETTSEEEEEETTTC---------C
T ss_pred EEEEEcCCCeEEEEEccCCceeeeecCccccccccccCcccccCc-eEeCCEEEEEcCCCEEEEEECCCC---------C
Confidence 44455677888889988887665554321 22232222 224568888899999999998766 2
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCe------eEEEEeCCCCeEEEEeec
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPV------SHVTMSETNGEIASVLQT 440 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V------~~l~~sp~~~~i~s~s~~ 440 (556)
.+................ +..++.++.++.+..+|..+|+.+..... . .++ ...... ++.++++.
T Consensus 125 ~~W~~~~~~~~~~~p~~~--~~~v~v~~~~g~l~~~d~~tG~~~W~~~~-~--~~~~~~~~~~~~~~~--~~~v~~g~-- 195 (376)
T 3q7m_A 125 VAWQTKVAGEALSRPVVS--DGLVLIHTSNGQLQALNEADGAVKWTVNL-D--MPSLSLRGESAPTTA--FGAAVVGG-- 195 (376)
T ss_dssp EEEEEECSSCCCSCCEEE--TTEEEEECTTSEEEEEETTTCCEEEEEEC-C--C-----CCCCCCEEE--TTEEEECC--
T ss_pred EEEEEeCCCceEcCCEEE--CCEEEEEcCCCeEEEEECCCCcEEEEEeC-C--CCceeecCCCCcEEE--CCEEEEEc--
Confidence 222222221111111121 45788888999999999999998877665 2 222 222333 45677666
Q ss_pred CcCCCCeEEEEEeC-CcEEEEeecCCCe-----EE---EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC
Q psy10778 441 TKTGGSILRLHTIN-AQLITSLASELRI-----TS---VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV 511 (556)
Q Consensus 441 ~~~~d~~I~iwdi~-g~~i~~~~~~~~i-----~~---i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h 511 (556)
.++.|..+|.. |+.+......... .. +.-.+.-.+ ..+++++.+|.+..+|..+++.+.....
T Consensus 196 ---~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~v~~~~~~g~l~~~d~~tG~~~w~~~~-- 267 (376)
T 3q7m_A 196 ---DNGRVSAVLMEQGQMIWQQRISQATGSTEIDRLSDVDTTPVVVN---GVVFALAYNGNLTALDLRSGQIMWKREL-- 267 (376)
T ss_dssp ---TTTEEEEEETTTCCEEEEEECCC-----------CCCCCCEEET---TEEEEECTTSCEEEEETTTCCEEEEECC--
T ss_pred ---CCCEEEEEECCCCcEEEEEecccCCCCcccccccccCCCcEEEC---CEEEEEecCcEEEEEECCCCcEEeeccC--
Confidence 78899999985 8887766432110 00 101100112 4677788899999999999998887762
Q ss_pred CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 512 ALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 512 ~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
.....+... +..++.++.+|.|..+|..+++.+...
T Consensus 268 -~~~~~~~~~--~~~l~~~~~~g~l~~~d~~tG~~~w~~ 303 (376)
T 3q7m_A 268 -GSVNDFIVD--GNRIYLVDQNDRVMALTIDGGVTLWTQ 303 (376)
T ss_dssp -CCEEEEEEE--TTEEEEEETTCCEEEEETTTCCEEEEE
T ss_pred -CCCCCceEE--CCEEEEEcCCCeEEEEECCCCcEEEee
Confidence 334455443 667888888999999999887765433
|
| >2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.4e-06 Score=87.47 Aligned_cols=189 Identities=11% Similarity=-0.031 Sum_probs=126.8
Q ss_pred cCCCCEEEEEeC--CC---cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc----------CCC
Q psy10778 333 APDCHTLWLGLT--SG---NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS----------EDG 397 (556)
Q Consensus 333 s~dg~~l~tgs~--Dg---~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs----------~Dg 397 (556)
.++++++++... .+ +|.++|..++ +.+..+.....+ .++++|+++.++.+. .++
T Consensus 29 ~~~~~~~yv~~~~~~~~~~~v~v~D~~t~---------~~~~~i~~g~~p--~i~~spDg~~lyv~n~~~~~~~rg~~~~ 97 (373)
T 2mad_H 29 GADGRRSYINLPAHHSAIIQQWVLDAGSG---------SILGHVNGGFLP--NPVAAHSGSEFALASTSFSRIAKGKRTD 97 (373)
T ss_pred CCCCCEEEEeCCcccCCccEEEEEECCCC---------eEEEEecCCCCC--CeEECCCCCEEEEEeccccccccCCCCC
Confidence 367777776653 22 7899998765 333445443444 899999999888875 367
Q ss_pred cEEEEeCCCCeEEEEeCCC---CC--CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEE-eecCCCeEEE
Q psy10778 398 TCLLWDINTIGYIREIPCV---DP--NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITS-LASELRITSV 470 (556)
Q Consensus 398 ~I~iwdl~~~~~v~~l~~~---h~--~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~-~~~~~~i~~i 470 (556)
.|.+||..+++.+.++..+ .. ......++++|||++++++... .++.|.++| . ++.+.. +..... +
T Consensus 98 ~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~---~~~~v~viD-~t~~~~~~~i~~~~~---~ 170 (373)
T 2mad_H 98 YVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFA---AGPAVGLVV-QGGSSDDQLLSSPTC---Y 170 (373)
T ss_pred eEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecC---CCCeEEEEE-CCCCEEeEEcCCCce---E
Confidence 8999999998888776541 00 0235589999999999988621 247899999 8 777777 654432 4
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC----CCCCC-eEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT----NVALP-VIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~----~h~~~-V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.+. +++. +.+++.+.||.+.++|. +++.+..... ....+ .....+.+++..++..+.++.+.+.|+.+.
T Consensus 171 ~~~--~~~~--~~~~~~~~dg~~~~vd~-~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~v~vid~~~~ 244 (373)
T 2mad_H 171 HIH--PGAP--STFYLLCAQGGLAKTDH-AGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIVWPVYSGKILQADISAA 244 (373)
T ss_pred EEE--eCCC--ceEEEEcCCCCEEEEEC-CCcEEEEEeccccccCCcceeecceeEecCCEEEEEcCCceEEEEeccCC
Confidence 445 4442 45667778999999999 8877643320 01122 233566777666555557889999998653
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.69 E-value=6.1e-06 Score=79.86 Aligned_cols=196 Identities=11% Similarity=-0.006 Sum_probs=136.4
Q ss_pred CceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 325 ATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.....+++++++...++.+. ++.|+++|..++ +.+..+. +.......+++.. +.+.++.-.++.+.+
T Consensus 21 ~f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg---------~v~~~i~l~~~~fgeGi~~~g-~~lyv~t~~~~~v~v 90 (266)
T 2iwa_A 21 AFTQGLVYAENDTLFESTGLYGRSSVRQVALQTG---------KVENIHKMDDSYFGEGLTLLN-EKLYQVVWLKNIGFI 90 (266)
T ss_dssp CCEEEEEECSTTEEEEEECSTTTCEEEEEETTTC---------CEEEEEECCTTCCEEEEEEET-TEEEEEETTCSEEEE
T ss_pred CCcccEEEeCCCeEEEECCCCCCCEEEEEECCCC---------CEEEEEecCCCcceEEEEEeC-CEEEEEEecCCEEEE
Confidence 34678999998654444443 579999999876 3333332 1112223455552 344555567899999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC------CCeEEEEEee
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE------LRITSVTFSN 474 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~------~~i~~i~~s~ 474 (556)
+|..+++.+.++.. . .-....++++++.++++. .++.|.++|.. .+.+..+... ..++.+.|.
T Consensus 91 iD~~t~~v~~~i~~---g-~~~g~glt~Dg~~l~vs~-----gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~- 160 (266)
T 2iwa_A 91 YDRRTLSNIKNFTH---Q-MKDGWGLATDGKILYGSD-----GTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI- 160 (266)
T ss_dssp EETTTTEEEEEEEC---C-SSSCCEEEECSSSEEEEC-----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-
T ss_pred EECCCCcEEEEEEC---C-CCCeEEEEECCCEEEEEC-----CCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-
Confidence 99999999998865 2 111244667888888775 67899999997 5667766532 246778877
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-C-----------CCCeEEEEEecCCC-EEEEEcCCCcEEEEEc
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-V-----------ALPVIAVTYSCDSQ-HLYASNTEGLVIIWES 541 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-h-----------~~~V~~l~~s~dg~-~l~sgs~Dg~V~vwdl 541 (556)
+| .+.+....++.|.+.|..+++.+..+..+ . ......|+++|+++ +++++...+.+.+.++
T Consensus 161 --dg---~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~~~~v~~i~l 235 (266)
T 2iwa_A 161 --NG---EVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKLWPKLFEIKL 235 (266)
T ss_dssp --TT---EEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETTCSEEEEEEE
T ss_pred --CC---EEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCCCCeEEEEEE
Confidence 56 66666667899999999999999988741 0 13568999999985 5566777899999998
Q ss_pred CCCC
Q psy10778 542 SSHN 545 (556)
Q Consensus 542 ~~~~ 545 (556)
....
T Consensus 236 ~~~~ 239 (266)
T 2iwa_A 236 HLVR 239 (266)
T ss_dssp EECC
T ss_pred eccc
Confidence 7643
|
| >1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1 | Back alignment and structure |
|---|
Probab=98.67 E-value=3.2e-05 Score=74.68 Aligned_cols=207 Identities=9% Similarity=-0.084 Sum_probs=135.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEee-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILL- 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~- 372 (556)
+..+...++.|..++..+......+. ........+++++++..|+.+ ...+.|.+++.+.. ....+.
T Consensus 50 ly~~d~~~~~I~~~~~~g~~~~~~~~-~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~----------~~~~~~~ 118 (267)
T 1npe_A 50 VYWTDISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT----------QRRVLFD 118 (267)
T ss_dssp EEEEETTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC----------SCEEEEC
T ss_pred EEEEECCCCEEEEEecCCCCcEEEEE-CCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCC----------CEEEEEE
Confidence 44455567889999987655433332 233567899999976655555 45678888887532 112222
Q ss_pred CCCccEEEEEEccCCCEEEEEcC---CCcEEEEeCCCCeEEEEeC-CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSE---DGTCLLWDINTIGYIREIP-CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~---Dg~I~iwdl~~~~~v~~l~-~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
........++++|++..|..+.. .+.|..+++.. +....+. . . -.....++++++++.|..+.. ..+.|
T Consensus 119 ~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg-~~~~~~~~~-~-~~~P~gia~d~~~~~lyv~d~----~~~~I 191 (267)
T 1npe_A 119 TGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDG-TNRRILAQD-N-LGLPNGLTFDAFSSQLCWVDA----GTHRA 191 (267)
T ss_dssp SSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTS-CCCEEEECT-T-CSCEEEEEEETTTTEEEEEET----TTTEE
T ss_pred CCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCC-CCcEEEEEC-C-CCCCcEEEEcCCCCEEEEEEC----CCCEE
Confidence 22245689999996655544443 46888888763 3333332 2 2 356889999998887776653 56899
Q ss_pred EEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC
Q psy10778 449 RLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 449 ~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
..+|.++.....+ ........++.. ++ .++++...++.|..+|..+++.+..+..+.......+++.|++.
T Consensus 192 ~~~~~~g~~~~~~~~~~~~P~gi~~d---~~---~lyva~~~~~~v~~~d~~~g~~~~~i~~g~~~~p~gi~~~~~~~ 263 (267)
T 1npe_A 192 ECLNPAQPGRRKVLEGLQYPFAVTSY---GK---NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALSQC 263 (267)
T ss_dssp EEEETTEEEEEEEEECCCSEEEEEEE---TT---EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECSCC
T ss_pred EEEecCCCceEEEecCCCCceEEEEe---CC---EEEEEECCCCeEEEEeCCCCCceEEEccccccccceeeecCccC
Confidence 9999986443333 333455677654 34 56666667789999999999999998743233578888888864
|
| >3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A | Back alignment and structure |
|---|
Probab=98.65 E-value=6.8e-06 Score=83.67 Aligned_cols=224 Identities=9% Similarity=0.019 Sum_probs=141.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+..++.++.|..+|.++++......... ........ .+..+++++.++.|..+|..++. .+......
T Consensus 105 ~v~v~~~~g~l~a~d~~tG~~~W~~~~~~-~~~~~p~~--~~~~v~v~~~~g~l~~~d~~tG~---------~~W~~~~~ 172 (376)
T 3q7m_A 105 HVYIGSEKAQVYALNTSDGTVAWQTKVAG-EALSRPVV--SDGLVLIHTSNGQLQALNEADGA---------VKWTVNLD 172 (376)
T ss_dssp EEEEEETTSEEEEEETTTCCEEEEEECSS-CCCSCCEE--ETTEEEEECTTSEEEEEETTTCC---------EEEEEECC
T ss_pred EEEEEcCCCEEEEEECCCCCEEEEEeCCC-ceEcCCEE--ECCEEEEEcCCCeEEEEECCCCc---------EEEEEeCC
Confidence 56667889999999999888765554321 11111112 24578888889999999987652 11222111
Q ss_pred CccE-----EEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC---------e-eEEEEeCCCCeEEEEee
Q psy10778 375 SACV-----TDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP---------V-SHVTMSETNGEIASVLQ 439 (556)
Q Consensus 375 ~~~V-----~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~---------V-~~l~~sp~~~~i~s~s~ 439 (556)
.... ...... +..++.++.+|.+..+|..+++.+..... ..... + ....+ .++.+++++
T Consensus 173 ~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG~~~w~~~~-~~~~~~~~~~~~~~~~~~p~~--~~~~v~~~~- 246 (376)
T 3q7m_A 173 MPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQGQMIWQQRI-SQATGSTEIDRLSDVDTTPVV--VNGVVFALA- 246 (376)
T ss_dssp C-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTCCEEEEEEC-CC-----------CCCCCCEE--ETTEEEEEC-
T ss_pred CCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCCcEEEEEec-ccCCCCcccccccccCCCcEE--ECCEEEEEe-
Confidence 1100 111111 45677888899999999999988776653 10000 1 11111 246677776
Q ss_pred cCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEE
Q psy10778 440 TTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAV 518 (556)
Q Consensus 440 ~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 518 (556)
.++.+..+|.. |+.+...... ...++... + ..+++++.+|.|..+|..+++.+..........+...
T Consensus 247 ----~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~~----~---~~l~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~ 314 (376)
T 3q7m_A 247 ----YNGNLTALDLRSGQIMWKRELG-SVNDFIVD----G---NRIYLVDQNDRVMALTIDGGVTLWTQSDLLHRLLTSP 314 (376)
T ss_dssp ----TTSCEEEEETTTCCEEEEECCC-CEEEEEEE----T---TEEEEEETTCCEEEEETTTCCEEEEECTTTTSCCCCC
T ss_pred ----cCcEEEEEECCCCcEEeeccCC-CCCCceEE----C---CEEEEEcCCCeEEEEECCCCcEEEeecccCCCcccCC
Confidence 78899999996 8877665433 34444443 3 4677888899999999999998877752112223333
Q ss_pred EEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 519 TYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 519 ~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
... +..|+.++.+|.|+++|..+++.+..+
T Consensus 315 ~~~--~~~l~v~~~~g~l~~~d~~tG~~~~~~ 344 (376)
T 3q7m_A 315 VLY--NGNLVVGDSEGYLHWINVEDGRFVAQQ 344 (376)
T ss_dssp EEE--TTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred EEE--CCEEEEEeCCCeEEEEECCCCcEEEEE
Confidence 333 567888999999999999987765443
|
| >1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A | Back alignment and structure |
|---|
Probab=98.48 E-value=5.4e-06 Score=88.42 Aligned_cols=191 Identities=8% Similarity=0.048 Sum_probs=135.8
Q ss_pred CCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEeeC-CCccEEEEEE-c-cCCCEEEEEc----------------
Q psy10778 335 DCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTILLG-HSACVTDLYL-C-AGFSVAVSSS---------------- 394 (556)
Q Consensus 335 dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~-s-~~~~~l~sgs---------------- 394 (556)
||++++.... ++.|.+.|+.+. +..+.+.- .......+++ + |++++++.++
T Consensus 100 DG~~lfVnd~~~~rVavIdl~t~---------~~~~ii~ip~g~~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~ 170 (595)
T 1fwx_A 100 DGRFLFMNDKANTRVARVRCDVM---------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 170 (595)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred CCCEEEEEcCCCCEEEEEECCCc---------eEeeEEeCCCCCCCcceeeeecCCCcEEEEecccccccCCCCcccccc
Confidence 7888877665 456999898875 33333321 2245778887 5 8999888874
Q ss_pred --CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC-----------------------------
Q psy10778 395 --EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT----------------------------- 443 (556)
Q Consensus 395 --~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~----------------------------- 443 (556)
.++.+.+.|..+++.+.++.- .+....++++|+|+++++.+.+...
T Consensus 171 ~~~~~~vtvID~~t~~v~~qI~V---gg~pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~ 247 (595)
T 1fwx_A 171 ANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 247 (595)
T ss_dssp GGEEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred cccCceEEEEECCCCeEEEEEEe---CCCccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccC
Confidence 246799999999999888875 3456788999999999998854300
Q ss_pred ----CCCeEEEEEeCC---cE-EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe------------E
Q psy10778 444 ----GGSILRLHTINA---QL-ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------------H 503 (556)
Q Consensus 444 ----~d~~I~iwdi~g---~~-i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------------~ 503 (556)
.-+.|.+.|... +. +..+.......++.++ |||. .+++++..+.+|.++|+.+.+ .
T Consensus 248 Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~s--PDGk--~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v 323 (595)
T 1fwx_A 248 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMA--PDKK--HLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAV 323 (595)
T ss_dssp TCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEEC--TTSS--EEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGE
T ss_pred CCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEc--CCCC--EEEEeCCCCCeEEEEECcccccccccccCcccce
Confidence 012366666652 33 4555555677889999 9993 344555578999999998653 4
Q ss_pred EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 504 LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 504 ~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+..+. -......++|+++|...++.-.|+.|.+||+.+
T Consensus 324 ~~~v~--vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~ 361 (595)
T 1fwx_A 324 VAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 361 (595)
T ss_dssp EECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEEcC--CCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence 55555 346789999999995445666799999999976
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=98.47 E-value=0.00059 Score=67.81 Aligned_cols=230 Identities=9% Similarity=-0.021 Sum_probs=144.6
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
+.|+..++.+......+. ....+.+++|++++..|+.+ ..++.|..++...... +. .....+........++
T Consensus 10 ~~I~~i~~~~~~~~~~~~--~~~~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~-~~----~~~~~~~~~~~~p~gl 82 (316)
T 1ijq_A 10 HEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHG-VS----SYDTVISRDIQAPDGL 82 (316)
T ss_dssp SSEEEEETTSCCCEEEEC--SCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEE
T ss_pred CeEEEEECCCcceEehhc--CCCceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCC-Cc----ccEEEEeCCCCCcCEE
Confidence 568888888766555543 34567899999876555554 4568888888765100 00 1111222223455788
Q ss_pred EEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE
Q psy10778 382 YLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460 (556)
Q Consensus 382 ~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~ 460 (556)
++.+.+ .+.++-...+.|.+.|+........+.. . ......++++|.++.|..+... ..+.|..++.+|.....
T Consensus 83 avd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~-~-~~~P~~iavdp~~g~ly~~d~~---~~~~I~~~~~dG~~~~~ 157 (316)
T 1ijq_A 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-N-GSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGVDIYS 157 (316)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-T-TCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTSCCEEE
T ss_pred EEeecCCeEEEEECCCCEEEEEeCCCCceEEEEEC-C-CCCcceEEeCCCCCEEEEEccC---CCCeEEEEcCCCCCeEE
Confidence 998654 4556667788999999875433333332 2 4568999999988877766510 12689889998766554
Q ss_pred ee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 461 LA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 461 ~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
+. .-.....++++ +++. ++.++-...+.|..+|+.. ...+.+.. .......++++. .+.++++....++|
T Consensus 158 ~~~~~~~~P~gla~d--~~~~--~lY~~D~~~~~I~~~d~dg-~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V 231 (316)
T 1ijq_A 158 LVTENIQWPNGITLD--LLSG--RLYWVDSKLHSISSIDVNG-GNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAI 231 (316)
T ss_dssp EECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTS-CSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEE
T ss_pred EEECCCCCceEEEEe--ccCC--EEEEEECCCCeEEEEecCC-CceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeE
Confidence 42 23567899999 6551 5556666778999999853 32233321 123456788886 45666666778899
Q ss_pred EEEEcCCCCCcCee
Q psy10778 537 IIWESSSHNRTPKF 550 (556)
Q Consensus 537 ~vwdl~~~~~~~~~ 550 (556)
..++..+++....+
T Consensus 232 ~~~~~~~g~~~~~i 245 (316)
T 1ijq_A 232 FSANRLTGSDVNLL 245 (316)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEE
Confidence 99998776554443
|
| >3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-06 Score=88.96 Aligned_cols=188 Identities=13% Similarity=0.042 Sum_probs=128.5
Q ss_pred CCCCEEEEEeCC-----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc----------CCCc
Q psy10778 334 PDCHTLWLGLTS-----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS----------EDGT 398 (556)
Q Consensus 334 ~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs----------~Dg~ 398 (556)
++++.+++.... +.|.++|..+. +.+..+..-..+ .++++|+++.++.+. .++.
T Consensus 82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~---------~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~ 150 (426)
T 3c75_H 82 PDARRVYIQDPAHFAAITQQFVIDGSTG---------RILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDY 150 (426)
T ss_dssp CCTTEEEEEECTTTCSSEEEEEEETTTT---------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEE
T ss_pred CCCCEEEEECCCcCCCCCeEEEEECCCC---------EEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCE
Confidence 466666665542 68999998776 444555544455 899999999777765 4678
Q ss_pred EEEEeCCCCeEEEEeCCC-CC----CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEE
Q psy10778 399 CLLWDINTIGYIREIPCV-DP----NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTF 472 (556)
Q Consensus 399 I~iwdl~~~~~v~~l~~~-h~----~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~ 472 (556)
|.++|..+++.+.++..+ .. ......++++|||++++++... .++.|.++|+. ++.+.++..... ...
T Consensus 151 VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~---~~~~VsVID~~t~kvv~~I~v~g~---~~~ 224 (426)
T 3c75_H 151 VEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFS---PAPAVGVVDLEGKTFDRMLDVPDC---YHI 224 (426)
T ss_dssp EEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECS---SSCEEEEEETTTTEEEEEEECCSE---EEE
T ss_pred EEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecC---CCCeEEEEECCCCeEEEEEEcCCc---eee
Confidence 999999999998877530 00 1245678999999999988620 25789999997 777777765432 223
Q ss_pred eeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE----ecCCCCCCe-EEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 473 SNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT----LNTNVALPV-IAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 473 s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~----~~~~h~~~V-~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
. |++. +.+++.+.||++.+.+..+++.... +..+ ..++ ..+.+++++..++..+..|.|.+.|+.+
T Consensus 225 ~--p~g~--~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~-~~p~~~~~~~~~dg~~~~~~s~~g~V~ViD~~~ 295 (426)
T 3c75_H 225 F--PASP--TVFYMNCRDGSLARVDFADGETKVTNTEVFHTE-DELLINHPAFSLRSGRLVWPTYTGKIFQADLTA 295 (426)
T ss_dssp E--EEET--TEEEEEETTSSEEEEECCTTCCEEEECCCCSCT-TSCBCSCCEECTTTCEEEEEBTTSEEEEEEECS
T ss_pred c--cCCC--cEEEEEcCCCCEEEEECCCCcEEEEeeeeeccC-CCceeeEeeecCCCCEEEEEeCCCcEEEEeccC
Confidence 3 3332 4566667788888888766655432 2211 1221 2457899998888888889999999865
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.47 E-value=2e-05 Score=75.45 Aligned_cols=180 Identities=10% Similarity=0.079 Sum_probs=122.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEE-EcCCCcEEE
Q psy10778 325 ATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVS-SSEDGTCLL 401 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s-gs~Dg~I~i 401 (556)
.-...+.|+ ++.+..+++.+| .|+++|+.++ +.+..+... .........++++.|.. .-.++.+.+
T Consensus 43 ~ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tg---------kv~~~~~l~-~~~FgeGit~~g~~ly~ltw~~~~v~v 111 (262)
T 3nol_A 43 AFTEGFFYR-NGYFYESTGLNGRSSIRKVDIESG---------KTLQQIELG-KRYFGEGISDWKDKIVGLTWKNGLGFV 111 (262)
T ss_dssp CEEEEEEEE-TTEEEEEEEETTEEEEEEECTTTC---------CEEEEEECC-TTCCEEEEEEETTEEEEEESSSSEEEE
T ss_pred cccceEEEE-CCEEEEECCCCCCceEEEEECCCC---------cEEEEEecC-CccceeEEEEeCCEEEEEEeeCCEEEE
Confidence 345788888 666666777666 8999998876 333333322 22222222233444444 446899999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC------CCeEEEEEee
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE------LRITSVTFSN 474 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~------~~i~~i~~s~ 474 (556)
+|..+++.+.++.. . . ....++++++.++.+. .++.|.++|.. .+.+..+... ..++.+.|.
T Consensus 112 ~D~~t~~~~~ti~~-~--~--eG~glt~dg~~L~~Sd-----Gs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~- 180 (262)
T 3nol_A 112 WNIRNLRQVRSFNY-D--G--EGWGLTHNDQYLIMSD-----GTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV- 180 (262)
T ss_dssp EETTTCCEEEEEEC-S--S--CCCCEEECSSCEEECC-----SSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-
T ss_pred EECccCcEEEEEEC-C--C--CceEEecCCCEEEEEC-----CCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-
Confidence 99999999999886 3 2 2234446778777765 57889999987 6777776531 345567776
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-C----------CCCeEEEEEecCCCEEEEEc
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-V----------ALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-h----------~~~V~~l~~s~dg~~l~sgs 531 (556)
+| .+.+....++.|.+.|..+++.+..+... . ......||++|+++.|++.+
T Consensus 181 --~G---~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVTG 243 (262)
T 3nol_A 181 --DG---EIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVTG 243 (262)
T ss_dssp --TT---EEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEEE
T ss_pred --CC---EEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEEC
Confidence 57 66666667889999999999999888741 0 13568999999877666555
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.46 E-value=2.5e-05 Score=74.90 Aligned_cols=181 Identities=10% Similarity=0.022 Sum_probs=124.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
.....+.++. +.+.++.+.+|.|+++|+.++ +.+..+......--.+++.. +++.++.-.++.+.++|.
T Consensus 55 ~ftqGL~~~~-~~Ly~stG~~g~v~~iD~~Tg---------kv~~~~l~~~~FgeGit~~g-~~Ly~ltw~~~~v~V~D~ 123 (268)
T 3nok_A 55 AFTQGLVFHQ-GHFFESTGHQGTLRQLSLESA---------QPVWMERLGNIFAEGLASDG-ERLYQLTWTEGLLFTWSG 123 (268)
T ss_dssp CCEEEEEEET-TEEEEEETTTTEEEECCSSCS---------SCSEEEECTTCCEEEEEECS-SCEEEEESSSCEEEEEET
T ss_pred cccceEEEEC-CEEEEEcCCCCEEEEEECCCC---------cEEeEECCCCcceeEEEEeC-CEEEEEEccCCEEEEEEC
Confidence 4456788873 566777788899999999887 44444411111122344432 344555557899999999
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC------CCeEEEEEeeCCC
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE------LRITSVTFSNAPE 477 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~------~~i~~i~~s~~pd 477 (556)
.+++.+.++.. . ..-..++ ++++.++.+. .++.|.++|.. .+.+..+... ..++.+.|. +
T Consensus 124 ~Tl~~~~ti~~-~--~eGwGLt--~Dg~~L~vSd-----Gs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~---d 190 (268)
T 3nok_A 124 MPPQRERTTRY-S--GEGWGLC--YWNGKLVRSD-----GGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA---N 190 (268)
T ss_dssp TTTEEEEEEEC-S--SCCCCEE--EETTEEEEEC-----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE---T
T ss_pred CcCcEEEEEeC-C--CceeEEe--cCCCEEEEEC-----CCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe---C
Confidence 99999999886 2 3223343 5678888776 68899999987 6777776531 255777876 6
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC------------CCCCeEEEEEecCC-CEEEEEcC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN------------VALPVIAVTYSCDS-QHLYASNT 532 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~s~dg-~~l~sgs~ 532 (556)
| .+.+....+..|.+.|..+++.+..+... .....+.||++|++ ++++||-.
T Consensus 191 G---~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVTGK~ 255 (268)
T 3nok_A 191 G---VIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMTGKL 255 (268)
T ss_dssp T---EEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEEETT
T ss_pred C---EEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEeCCC
Confidence 7 66666667889999999999999888741 12357899999976 45555543
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=0.0001 Score=73.27 Aligned_cols=222 Identities=10% Similarity=-0.077 Sum_probs=135.9
Q ss_pred EEeccCCCeEEEEeCCCCCCcceEcCC------------------CCCceEEEEEcC-CCCEEEEEeCCCcEEEEEeeec
Q psy10778 296 ICWNECDNLIRLKMSKELPATPVIRPP------------------LGATIATATTAP-DCHTLWLGLTSGNILVYEYELN 356 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~~~~~~~~~~------------------h~~~V~~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~ 356 (556)
+.++..++.|..|+..++......... ....+..+++.+ ++ .|+++...+.|..++...+
T Consensus 33 l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g-~l~v~d~~~~i~~~d~~~g 111 (322)
T 2fp8_A 33 FYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNN-QLYIVDCYYHLSVVGSEGG 111 (322)
T ss_dssp EEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTT-EEEEEETTTEEEEECTTCE
T ss_pred EEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCC-cEEEEECCCCEEEEeCCCC
Confidence 444556777887877654332211100 013578899997 55 4555554455777765432
Q ss_pred cCcccccccCCCeEee----C-CCccEEEEEEcc-CCCEEEEEcC-----------------CCcEEEEeCCCCeEEEEe
Q psy10778 357 ASTNKIEFCKPPTILL----G-HSACVTDLYLCA-GFSVAVSSSE-----------------DGTCLLWDINTIGYIREI 413 (556)
Q Consensus 357 ~~~~~~~~~~~~~~l~----~-h~~~V~~l~~s~-~~~~l~sgs~-----------------Dg~I~iwdl~~~~~v~~l 413 (556)
. +..+. + .......+++.+ +|.+.++-.. +|.|..+|..+++.....
T Consensus 112 ~----------~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~ 181 (322)
T 2fp8_A 112 H----------ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLL 181 (322)
T ss_dssp E----------CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEE
T ss_pred E----------EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEec
Confidence 0 11111 1 123467899999 9987776533 367889998776543332
Q ss_pred CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc---EEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeC
Q psy10778 414 PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ---LITSL-ASELRITSVTFSNAPEGVSQNVIVTGHS 489 (556)
Q Consensus 414 ~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~---~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~ 489 (556)
.. ......++++++++.+..+.. ..+.|..|++++. ....+ ...+ ...+++. ++| ++.++...
T Consensus 182 ~~---~~~p~gia~~~dg~~lyv~d~----~~~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d--~~G---~l~va~~~ 248 (322)
T 2fp8_A 182 KE---LHVPGGAEVSADSSFVLVAEF----LSHQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRN--ADG---HFWVSSSE 248 (322)
T ss_dssp EE---ESCCCEEEECTTSSEEEEEEG----GGTEEEEEESSSTTTTCEEEEEECSS-EEEEEEC--TTS---CEEEEEEE
T ss_pred cC---CccCcceEECCCCCEEEEEeC----CCCeEEEEECCCCcCCccceEEeCCC-CCCeEEC--CCC---CEEEEecC
Confidence 22 234567999999987766642 5678999998741 11111 2233 7888888 888 66666544
Q ss_pred ----------CCeEEEEeCCCCeEEEEecCCC---CCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 490 ----------DGTIQLWSGYKLAHLLTLNTNV---ALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 490 ----------dg~I~iwd~~~~~~~~~~~~~h---~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+.|..+|. .++.+..+.... -..++++++ .+++++++...++.|.++++..
T Consensus 249 ~~~~~~~~~~~~~v~~~d~-~G~~~~~~~~~~g~~~~~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~ 313 (322)
T 2fp8_A 249 ELDGNMHGRVDPKGIKFDE-FGNILEVIPLPPPFAGEHFEQIQE-HDGLLYIGTLFHGSVGILVYDK 313 (322)
T ss_dssp ETTSSTTSCEEEEEEEECT-TSCEEEEEECCTTTTTSCCCEEEE-ETTEEEEECSSCSEEEEEEC--
T ss_pred cccccccCCCccEEEEECC-CCCEEEEEECCCCCccccceEEEE-eCCEEEEeecCCCceEEEeccc
Confidence 467888886 577777776321 245677776 4666666666788999999865
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.42 E-value=3.4e-05 Score=83.55 Aligned_cols=242 Identities=11% Similarity=0.034 Sum_probs=142.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCC---CceEE-EEEcCCCCEEEEEeC------CCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLG---ATIAT-ATTAPDCHTLWLGLT------SGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~---~~V~~-i~~s~dg~~l~tgs~------Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.+..++.|+.|..+|.++++.+-....... ..+.+ .... + ..+++++. +|.|..+|..++...-+...
T Consensus 117 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~-~-g~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 194 (571)
T 2ad6_A 117 QIVKKQANGHLLALDAKTGKINWEVEVCDPKVGSTLTQAPFVA-K-DTVLMGCSGAELGVRGAVNAFDLKTGELKWRAFA 194 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-T-TEEEEECBCGGGTCCCEEEEEETTTCCEEEEEES
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEecCCCCCccceeccCCEEE-C-CEEEEEecCCccCCCCEEEEEECCCCcEEEEEcc
Confidence 666778899999999999987765543210 01211 1111 3 45666654 68898888876521100000
Q ss_pred cCCCeE------------e-----------------eCCCccEEEEEEccCCCEEEEEcCC----------------CcE
Q psy10778 365 CKPPTI------------L-----------------LGHSACVTDLYLCAGFSVAVSSSED----------------GTC 399 (556)
Q Consensus 365 ~~~~~~------------l-----------------~~h~~~V~~l~~s~~~~~l~sgs~D----------------g~I 399 (556)
...... + .+....-..+++.++...+..++.+ +.|
T Consensus 195 ~~~~~~~~~~p~~~~~~~~~G~~~~g~~~w~~~~~~~gg~~~w~~~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v 274 (571)
T 2ad6_A 195 TGSDDSVRLAKDFNSANPHYGQFGLGTKTWEGDAWKIGGGTNWGWYAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTI 274 (571)
T ss_dssp SSCHHHHTBCTTTTTTCGGGCCSSHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEE
T ss_pred CCCccccccCcccccccccccccccccccCcccceecCCCCeeeeEEEcCCCCeEEEECCCCccccCCccCCCceeEEEE
Confidence 000000 0 0000001135566666666666532 359
Q ss_pred EEEeCCCCeEEEEeCCC-CCCC----CeeE---EEEeCCCC---eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC--
Q psy10778 400 LLWDINTIGYIREIPCV-DPNT----PVSH---VTMSETNG---EIASVLQTTKTGGSILRLHTIN-AQLITSLASEL-- 465 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~-h~~~----~V~~---l~~sp~~~---~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~-- 465 (556)
..+|..+|+.+..+... | .. .+.. +....+|+ .++.++ .+|.++++|.. |+++.......
T Consensus 275 ~Ald~~tG~~~W~~~~~~~-d~~d~~~~~~p~l~~~~~~G~~~~~v~~~~-----~~G~l~~lD~~tG~~~w~~~~~~~~ 348 (571)
T 2ad6_A 275 WGRDLDTGMAKWGYQKTPH-DEWDFAGVNQMVLTDQPVNGKMTPLLSHID-----RNGILYTLNRENGNLIVAEKVDPAV 348 (571)
T ss_dssp EEEETTTCCEEEEEESSTT-CSSCCCCCCCCEEEEEEETTEEEEEEEEEC-----TTSEEEEEETTTCCEEEEEESSTTC
T ss_pred EEEecCCCcEEEEecCCCC-cccccccCCCCEEEecccCCcEEEEEEEeC-----CCcEEEEEECCCCCEEeeecccCCc
Confidence 99999999988766430 1 11 1111 22224564 455666 78999999986 88877654321
Q ss_pred ------------Ce--------------------------EEEEEeeCCCCCcceEEEEEe-------------------
Q psy10778 466 ------------RI--------------------------TSVTFSNAPEGVSQNVIVTGH------------------- 488 (556)
Q Consensus 466 ------------~i--------------------------~~i~~s~~pdg~~~~~l~tg~------------------- 488 (556)
++ ..++++ |+. .++++..
T Consensus 349 ~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d--p~~---g~~yv~~~~~~~~~~~~~~~~~~g~~ 423 (571)
T 2ad6_A 349 NVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYD--PES---RTLYAGLNHICMDWEPFMLPYRAGQF 423 (571)
T ss_dssp CSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE--TTT---TEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred cccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceEC--CCC---CEEEEEchhccccccccccccccCCc
Confidence 11 134566 554 3454432
Q ss_pred ------------------CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 489 ------------------SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 489 ------------------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
.+|.|..||..+++.+.++.. ...+.+..+...+..++.++.||.|++||.++++.+.++
T Consensus 424 ~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~ 501 (571)
T 2ad6_A 424 FVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWE--KFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNF 501 (571)
T ss_dssp CCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEE
T ss_pred cccccceeccCccccCCCCCCeEEEEECCCCCEEEEecC--CCCccceeEEECCCEEEEEcCCCeEEEEECCCCCEEEEE
Confidence 357899999999999888863 233333334445677888999999999999998887665
Q ss_pred e
Q psy10778 551 L 551 (556)
Q Consensus 551 ~ 551 (556)
.
T Consensus 502 ~ 502 (571)
T 2ad6_A 502 K 502 (571)
T ss_dssp E
T ss_pred e
Confidence 4
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.40 E-value=2e-05 Score=87.08 Aligned_cols=242 Identities=10% Similarity=0.068 Sum_probs=147.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCC---CceEE-EEEcCCCCEEEEEeC------CCcEEEEEeeeccCcccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLG---ATIAT-ATTAPDCHTLWLGLT------SGNILVYEYELNASTNKIEF 364 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~---~~V~~-i~~s~dg~~l~tgs~------Dg~I~vwd~~~~~~~~~~~~ 364 (556)
.+..++.|+.|..+|.++++.+-....... ..+.+ ... .+ ..++++.. +|.|..+|..++...-....
T Consensus 119 ~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v-~~-~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~~ 196 (668)
T 1kv9_A 119 KVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRV-VK-GKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFYT 196 (668)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEE-ET-TEEEECCBCTTTCCBCEEEEEETTTCCEEEEEES
T ss_pred EEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEE-EC-CEEEEeCCCCCcCCCCEEEEEECCCCcEEEEecc
Confidence 677788899999999999987766654211 11111 011 13 35555543 57888888776521100000
Q ss_pred --cCCCeE------------e--------eCCCccEEEEEEccCCCEEEEEcCCC-------------------cEEEEe
Q psy10778 365 --CKPPTI------------L--------LGHSACVTDLYLCAGFSVAVSSSEDG-------------------TCLLWD 403 (556)
Q Consensus 365 --~~~~~~------------l--------~~h~~~V~~l~~s~~~~~l~sgs~Dg-------------------~I~iwd 403 (556)
..+... . .++......+++.++..+++.++.++ .|..+|
T Consensus 197 ~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD 276 (668)
T 1kv9_A 197 VPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIR 276 (668)
T ss_dssp SCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEEC
T ss_pred cCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEc
Confidence 000000 0 01111123467888888888888776 399999
Q ss_pred CCCCeEEEEeCCC-CCC-------CCeeEEEEeCCCC---eEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC------
Q psy10778 404 INTIGYIREIPCV-DPN-------TPVSHVTMSETNG---EIASVLQTTKTGGSILRLHTIN-AQLITSLASEL------ 465 (556)
Q Consensus 404 l~~~~~v~~l~~~-h~~-------~~V~~l~~sp~~~---~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~------ 465 (556)
..+|+.+..+... | . .+.....+..+++ .++.++ .+|.++++|.. |+++.......
T Consensus 277 ~~tG~~~W~~~~~~~-~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~-----~~G~l~~lD~~tG~~l~~~~~~~~~w~~~ 350 (668)
T 1kv9_A 277 PDTGKLAWHYQVTPG-DSWDFTATQQITLAELNIDGKPRKVLMQAP-----KNGFFYVLDRTNGKLISAEKFGKVTWAEK 350 (668)
T ss_dssp TTTCCEEEEEESSTT-CCSCCCCCSCEEEEEEEETTEEEEEEEECC-----TTSEEEEEETTTCCEEEEEESSCCCSEEE
T ss_pred CCCCceeeEeecCCC-ccccccCCCCcEEEEeccCCcEEEEEEEEC-----CCCEEEEEECCCCCEeccccccccccccc
Confidence 9999988766531 2 1 2333333334554 466666 89999999986 88875432111
Q ss_pred -------C------------------------eEEEEEeeCCCCCcceEEEEE---------------------------
Q psy10778 466 -------R------------------------ITSVTFSNAPEGVSQNVIVTG--------------------------- 487 (556)
Q Consensus 466 -------~------------------------i~~i~~s~~pdg~~~~~l~tg--------------------------- 487 (556)
. -..++++ |+. .++++.
T Consensus 351 ~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~d--p~~---g~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 425 (668)
T 1kv9_A 351 VDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFN--PGT---GLVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGF 425 (668)
T ss_dssp ECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEE--TTT---TEEEEEEEECCEEECCCGGGCCCCSSCCCSSCG
T ss_pred cccccCCccccccccccCCeeEECCCCccccCCCcceEC--CCC---CEEEEeccccceEeeeeccccccccccccCccc
Confidence 0 0125566 443 333321
Q ss_pred ---------eCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 488 ---------HSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 488 ---------~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..+|.|..||+.+++.+.+... ..+.....+...+.++++++.||.|++||.++++.+..+.
T Consensus 426 ~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~--~~~~~~~~~~t~gg~vf~g~~dg~l~a~d~~tG~~l~~~~ 496 (668)
T 1kv9_A 426 ADATDVPAAVVSGALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (668)
T ss_dssp GGCCCCCGGGCEEEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cccCCCCCCCccceEEEEeCCCCcEEEEccC--CCCCcCceeEeCCCEEEEECCcccchhhhhhcChhheEec
Confidence 1248899999999999888763 2344444556678899999999999999999988776553
|
| >1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1 | Back alignment and structure |
|---|
Probab=98.37 E-value=7.5e-05 Score=82.46 Aligned_cols=234 Identities=12% Similarity=0.102 Sum_probs=146.0
Q ss_pred CCeEEEEeCCCCCCcceEcCCC-C-----------------------------CceEEEEEcCCCCEEEEEeCCCc----
Q psy10778 302 DNLIRLKMSKELPATPVIRPPL-G-----------------------------ATIATATTAPDCHTLWLGLTSGN---- 347 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h-~-----------------------------~~V~~i~~s~dg~~l~tgs~Dg~---- 347 (556)
+|.|+.+|.++++.+-.+.... . .....+++.++...++.++.++.
T Consensus 177 ~g~v~a~D~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~ 256 (668)
T 1kv9_A 177 RGFVSAYDADTGKLAWRFYTVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNR 256 (668)
T ss_dssp BCEEEEEETTTCCEEEEEESSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCH
T ss_pred CCEEEEEECCCCcEEEEecccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCcccc
Confidence 5899999999998776654311 0 01124678888888988887663
Q ss_pred ---------------EEEEEeeeccCcccccccCCCeEeeC--CC-------ccEEEEEEccCCC---EEEEEcCCCcEE
Q psy10778 348 ---------------ILVYEYELNASTNKIEFCKPPTILLG--HS-------ACVTDLYLCAGFS---VAVSSSEDGTCL 400 (556)
Q Consensus 348 ---------------I~vwd~~~~~~~~~~~~~~~~~~l~~--h~-------~~V~~l~~s~~~~---~l~sgs~Dg~I~ 400 (556)
|..+|..++ +.+-.... |. .+.....+..+|+ .++.++.+|.+.
T Consensus 257 ~~~~~~~gd~l~~~~v~AlD~~tG---------~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~ 327 (668)
T 1kv9_A 257 EVRSPGGGDNLYLSSILAIRPDTG---------KLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFY 327 (668)
T ss_dssp HHHSTTCCCCTTTTEEEEECTTTC---------CEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEE
T ss_pred CCCCCCCCCceeeeeEEEEcCCCC---------ceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEE
Confidence 777777665 22222221 21 2333333334665 688999999999
Q ss_pred EEeCCCCeEEEEeCCCCC-----------CCC------------------------eeEEEEeCCCCeEEEEeec-----
Q psy10778 401 LWDINTIGYIREIPCVDP-----------NTP------------------------VSHVTMSETNGEIASVLQT----- 440 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~-----------~~~------------------------V~~l~~sp~~~~i~s~s~~----- 440 (556)
++|..+|+.+...+. .+ ..+ -..++++|+.+.+.+....
T Consensus 328 ~lD~~tG~~l~~~~~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g~~yv~~~~~~~~~ 406 (668)
T 1kv9_A 328 VLDRTNGKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGLVYIPYQEVPGVY 406 (668)
T ss_dssp EEETTTCCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTEEEEEEEECCEEE
T ss_pred EEECCCCCEeccccc-cccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCCEEEEeccccceEe
Confidence 999999998754332 10 000 0126788887776653210
Q ss_pred --------------------------CcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeE
Q psy10778 441 --------------------------TKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTI 493 (556)
Q Consensus 441 --------------------------~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I 493 (556)
....++.|..||++ |+.+.............+. ..+ .++++|+.||.|
T Consensus 407 ~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~--t~g---g~vf~g~~dg~l 481 (668)
T 1kv9_A 407 RNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS--TAG---NLVFQGTAAGQM 481 (668)
T ss_dssp CCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--ETT---TEEEEECTTSEE
T ss_pred eeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeE--eCC---CEEEEECCcccc
Confidence 00124789999986 8888777655544443444 344 588889999999
Q ss_pred EEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE-EEEcC--------------------CCcEEEEEcCCCCCcCee
Q psy10778 494 QLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL-YASNT--------------------EGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 494 ~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~sgs~--------------------Dg~V~vwdl~~~~~~~~~ 550 (556)
+.||..+++.+..+..+....-.-+.+..+|+.. +.++. .+.|.++.+......|.+
T Consensus 482 ~a~d~~tG~~l~~~~~~~~~~~~p~~~~~~G~~yva~~~G~g~~~~~~~~~~~~~~~~~~~~~i~~~~l~g~~~~p~~ 559 (668)
T 1kv9_A 482 HAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFALDGKAQLPPP 559 (668)
T ss_dssp EEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEEETCCCCCCCC
T ss_pred hhhhhhcChhheEecCCCCcccCceEEEECCEEEEEEEecCCCccccccccccccccCCCCCeEEEEEcCccCCCCCC
Confidence 9999999999998874321111233445677643 33332 347888888765444443
|
| >2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A* | Back alignment and structure |
|---|
Probab=98.37 E-value=2.7e-05 Score=75.27 Aligned_cols=160 Identities=8% Similarity=-0.015 Sum_probs=114.3
Q ss_pred cEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 377 CVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
....+.+++++.+.++.+. ++.|.+.|+.+++.++++.. ........+++. ++.+..+.. .++.+.++|..
T Consensus 22 f~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l-~~~~fgeGi~~~--g~~lyv~t~----~~~~v~viD~~ 94 (266)
T 2iwa_A 22 FTQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKM-DDSYFGEGLTLL--NEKLYQVVW----LKNIGFIYDRR 94 (266)
T ss_dssp CEEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEEC-CTTCCEEEEEEE--TTEEEEEET----TCSEEEEEETT
T ss_pred CcccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEec-CCCcceEEEEEe--CCEEEEEEe----cCCEEEEEECC
Confidence 4689999998766665543 68999999999999998765 202223345554 566766653 78999999997
Q ss_pred -CcEEEEeecC-CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-C---CCeEEEEEecCCCEEE
Q psy10778 455 -AQLITSLASE-LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-A---LPVIAVTYSCDSQHLY 528 (556)
Q Consensus 455 -g~~i~~~~~~-~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-~---~~V~~l~~s~dg~~l~ 528 (556)
.+.+.++... .. ...++ ++| ..++++..++.|.++|..+.+.+..+..+. . ..+..+.|. +|+..+
T Consensus 95 t~~v~~~i~~g~~~--g~glt--~Dg---~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyv 166 (266)
T 2iwa_A 95 TLSNIKNFTHQMKD--GWGLA--TDG---KILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWA 166 (266)
T ss_dssp TTEEEEEEECCSSS--CCEEE--ECS---SSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred CCcEEEEEECCCCC--eEEEE--ECC---CEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEE
Confidence 7888888654 22 23344 456 455556678999999999999888887421 1 236788888 776555
Q ss_pred EEcCCCcEEEEEcCCCCCcCeee
Q psy10778 529 ASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
....++.|.+.|..+++.+..+.
T Consensus 167 n~~~~~~V~vID~~tg~V~~~I~ 189 (266)
T 2iwa_A 167 NIWQTDCIARISAKDGTLLGWIL 189 (266)
T ss_dssp EETTSSEEEEEETTTCCEEEEEE
T ss_pred ecCCCCeEEEEECCCCcEEEEEE
Confidence 55568899999999988766554
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00024 Score=72.80 Aligned_cols=232 Identities=7% Similarity=-0.047 Sum_probs=146.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|..+. .+.|+..+..+........ ....+..++|.+.+..|+.+ ...+.|..++.... .....+..
T Consensus 89 ~l~~~~-~~~I~~i~~~~~~~~~~~~--~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~---------~~~~~~~~ 156 (386)
T 3v65_B 89 VLLFAN-RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------NVEEVVST 156 (386)
T ss_dssp EEEEEC-BSCEEEECTTSCCCEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------CEEEEECS
T ss_pred eeEeec-CccceeeccCCCcEEEEec--CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCC---------CcEEEEeC
Confidence 444433 3567888887665544443 34567899999765555544 45677877776543 11112222
Q ss_pred CCccEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC-CeEEEE
Q psy10778 374 HSACVTDLYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG-SILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d-~~I~iw 451 (556)
.......+++.+.+ .+.++-...+.|.+.++........+.. . -.....++++|.++.|..+.. .. +.|..+
T Consensus 157 ~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~-~-l~~P~giavdp~~g~ly~td~----~~~~~I~r~ 230 (386)
T 3v65_B 157 GLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-S-LEKPRAIALHPMEGTIYWTDW----GNTPRIEAS 230 (386)
T ss_dssp SCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECS-S-CSCEEEEEEETTTTEEEEEEC----SSSCEEEEE
T ss_pred CCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecC-C-CCCCcEEEEEcCCCeEEEecc----CCCCEEEEE
Confidence 23345678888754 4556666678888888874433333333 2 467899999998887776652 33 789889
Q ss_pred EeCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TINAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
+.+|.....+. .-.....++++ +++. ++.++-+..+.|..+|+........+. .......+|++ .++.++++
T Consensus 231 ~~dG~~~~~~~~~~~~~PnGlavd--~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~~-~~~~~P~giav-~~~~ly~t 304 (386)
T 3v65_B 231 SMDGSGRRIIADTHLFWPNGLTID--YAGR--RMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWT 304 (386)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEE--GGGT--EEEEEETTTTEEEEECTTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEE
T ss_pred eCCCCCcEEEEECCCCCeeeEEEe--CCCC--EEEEEECCCCEEEEEeCCCCeeEEEEE-CCCCCceEEEE-ECCEEEEe
Confidence 98876544442 23467899999 5441 566666677899999975433322333 23456788888 45566667
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
....+.|..++..+++....+
T Consensus 305 d~~~~~V~~~~~~~G~~~~~i 325 (386)
T 3v65_B 305 DWHTKSINSANKFTGKNQEII 325 (386)
T ss_dssp ETTTTEEEEEETTTCCSCEEE
T ss_pred eCCCCeEEEEECCCCcceEEE
Confidence 777889999996666554443
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00045 Score=69.75 Aligned_cols=226 Identities=8% Similarity=-0.059 Sum_probs=143.0
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
.+.|+..+.........+. ....+..++|++.+..|+.+ ...+.|..++.... .....+.........
T Consensus 52 ~~~I~~i~~~g~~~~~~~~--~~~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~---------~~~~~~~~~~~~p~g 120 (349)
T 3v64_C 52 RIDIRQVLPHRSEYTLLLN--NLENAIALDFHHRRELVFWSDVTLDRILRANLNGS---------NVEEVVSTGLESPGG 120 (349)
T ss_dssp BSCEEEECTTSCCEEEEEC--SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSSCSCCCE
T ss_pred ccceEEEeCCCCeeEEeec--CCCceEEEEEeccccEEEEEeccCCceEEEecCCC---------CceEEEeCCCCCccE
Confidence 3457777776554433332 33457899999766666554 45677877776643 111222223344578
Q ss_pred EEEccCC-CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCC-CeEEEEEeCCcEE
Q psy10778 381 LYLCAGF-SVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGG-SILRLHTINAQLI 458 (556)
Q Consensus 381 l~~s~~~-~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d-~~I~iwdi~g~~i 458 (556)
+++.+.+ .+.++-...+.|.+.++........+.. . -.....++++|.++.|..+.. .. +.|..++.+|...
T Consensus 121 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~-l~~P~~iavdp~~g~ly~td~----~~~~~I~r~~~dG~~~ 194 (349)
T 3v64_C 121 LAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQ-S-LEKPRAIALHPMEGTIYWTDW----GNTPRIEASSMDGSGR 194 (349)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECT-T-CSCEEEEEEETTTTEEEEEEC----SSSCEEEEEETTSCSC
T ss_pred EEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeC-C-CCCcceEEEecCcCeEEEecc----CCCCEEEEEeCCCCCc
Confidence 8998754 4556666778899999875433333333 2 466899999998777776652 34 7899999887654
Q ss_pred EEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 459 TSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 459 ~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
..+. .-.....++++ +++. ++.++-...+.|..+|+........+. .......++++ .++.++++-...+.|
T Consensus 195 ~~~~~~~~~~PnGla~d--~~~~--~lY~aD~~~~~I~~~~~dG~~~~~~~~-~~~~~P~giav-~~~~ly~td~~~~~V 268 (349)
T 3v64_C 195 RIIADTHLFWPNGLTID--YAGR--RMYWVDAKHHVIERANLDGSHRKAVIS-QGLPHPFAITV-FEDSLYWTDWHTKSI 268 (349)
T ss_dssp EESCCSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTSCSCEEEEC-SSCSSEEEEEE-ETTEEEEEETTTTEE
T ss_pred EEEEECCCCCcceEEEe--CCCC--EEEEEECCCCEEEEEeCCCCceEEEEe-CCCCCceEEEE-ECCEEEEecCCCCeE
Confidence 4442 23467899999 6541 556666677899999975433222232 23456788888 455666666678889
Q ss_pred EEEEcCCCCCcCee
Q psy10778 537 IIWESSSHNRTPKF 550 (556)
Q Consensus 537 ~vwdl~~~~~~~~~ 550 (556)
..++..+++....+
T Consensus 269 ~~~~~~~G~~~~~i 282 (349)
T 3v64_C 269 NSANKFTGKNQEII 282 (349)
T ss_dssp EEEETTTCCSCEEE
T ss_pred EEEEccCCCccEEe
Confidence 98886666554443
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.34 E-value=0.00025 Score=67.21 Aligned_cols=181 Identities=7% Similarity=0.021 Sum_probs=121.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccCCCeEeeCCCcc-EEEEEEccCCCEEEEEcCCCcEE
Q psy10778 324 GATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCKPPTILLGHSAC-VTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~-V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
......+.|+. +.+..+.+.+| .|+++|+.++ +.+..+.-.... --.++.. .+++.+..-.++.+.
T Consensus 20 ~~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tg---------kv~~~~~l~~~~fgeGi~~~-~~~ly~ltw~~~~v~ 88 (243)
T 3mbr_X 20 TAFTEGLFYLR-GHLYESTGETGRSSVRKVDLETG---------RILQRAEVPPPYFGAGIVAW-RDRLIQLTWRNHEGF 88 (243)
T ss_dssp TCCEEEEEEET-TEEEEEECCTTSCEEEEEETTTC---------CEEEEEECCTTCCEEEEEEE-TTEEEEEESSSSEEE
T ss_pred ccccccEEEEC-CEEEEECCCCCCceEEEEECCCC---------CEEEEEeCCCCcceeEEEEe-CCEEEEEEeeCCEEE
Confidence 34566888886 55566666654 8999999876 333333322211 1233333 234444556789999
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC------CCeEEEEEe
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE------LRITSVTFS 473 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~------~~i~~i~~s 473 (556)
++|..+++.+.++.. . ..-..+ +++++.++.+. .++.|.++|.. .+.+.++... ..++.+.+.
T Consensus 89 v~D~~tl~~~~ti~~-~--~~Gwgl--t~dg~~L~vSd-----gs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~ 158 (243)
T 3mbr_X 89 VYDLATLTPRARFRY-P--GEGWAL--TSDDSHLYMSD-----GTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV 158 (243)
T ss_dssp EEETTTTEEEEEEEC-S--SCCCEE--EECSSCEEEEC-----SSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE
T ss_pred EEECCcCcEEEEEeC-C--CCceEE--eeCCCEEEEEC-----CCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe
Confidence 999999999999986 3 322334 46777777776 67899999987 6777776532 456677776
Q ss_pred eCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC------------CCCCeEEEEEecCCCEEEEEc
Q psy10778 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN------------VALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~------------h~~~V~~l~~s~dg~~l~sgs 531 (556)
+| ++.+....+..|.+.|..+++.+..+... .....+.|+++|+++.|++.+
T Consensus 159 ---~G---~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVTG 222 (243)
T 3mbr_X 159 ---NG---ELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVTG 222 (243)
T ss_dssp ---TT---EEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEEE
T ss_pred ---CC---EEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEEC
Confidence 66 66666667889999999999999888741 123568999999775555443
|
| >3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.32 E-value=2.7e-06 Score=84.53 Aligned_cols=210 Identities=10% Similarity=0.037 Sum_probs=129.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.+-.|+.++.|..++ .+++...... .+...+.++...++| .++.|+.+ +..+|. .+ +.. ......
T Consensus 32 ~l~v~t~~~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g-~l~v~t~~--l~~~d~-~g----~~~-----~~~~~~ 96 (330)
T 3hxj_A 32 TIYLGSSNKNLYAIN-TDGSVKWFFK-SGEIIECRPSIGKDG-TIYFGSDK--VYAINP-DG----TEK-----WRFDTK 96 (330)
T ss_dssp CEECSSTTTTTEEEC-TTSCEEESSC-GGGEEEECCEETTTT-EECCSSCE--EEEECC-CG----GGG-----GGSCC-
T ss_pred eEEEEcCCCEEEEEC-CCCcEEEEEe-cCCCcccceEEecCC-cEEEecCc--EEEECC-CC----cEE-----EEEECC
Confidence 444556677777787 6555432222 123345666776665 45556554 777764 22 111 111111
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
........+. +..+..++.++.+..+|.. ++....... . ...+.++...+++. +..++ .++.|..+|.+
T Consensus 97 ~~~~~~~~~~--~~~l~v~t~~~~l~~~d~~-g~~~~~~~~-~-~~~~~~~~~~~~g~-l~vgt-----~~~~l~~~d~~ 165 (330)
T 3hxj_A 97 KAIVSDFTIF--EDILYVTSMDGHLYAINTD-GTEKWRFKT-K-KAIYATPIVSEDGT-IYVGS-----NDNYLYAINPD 165 (330)
T ss_dssp ----CCEEEE--TTEEEEECTTSEEEEECTT-SCEEEEEEC-S-SCCCSCCEECTTSC-EEEEC-----TTSEEEEECTT
T ss_pred CCcccCceEE--CCEEEEEecCCEEEEEcCC-CCEEEEEcC-C-CceeeeeEEcCCCE-EEEEc-----CCCEEEEECCC
Confidence 1112222233 4567778889999999998 777666655 4 45566777776665 55565 67899999998
Q ss_pred CcEEEEeec-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 455 AQLITSLAS-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 455 g~~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
|+.+..... ...+.++... +++ . +..++ +.|..+| .+++.+.... .....+.++..+++|.+ ..++.+
T Consensus 166 g~~~~~~~~~~~~~~~~~~d--~~g---~-l~v~t--~~l~~~d-~~g~~~~~~~-~~~~~~~~~~~~~~g~l-~v~t~~ 234 (330)
T 3hxj_A 166 GTEKWRFKTNDAITSAASIG--KDG---T-IYFGS--DKVYAIN-PDGTEKWNFY-AGYWTVTRPAISEDGTI-YVTSLD 234 (330)
T ss_dssp SCEEEEEECSSCCCSCCEEC--TTC---C-EEEES--SSEEEEC-TTSCEEEEEC-CSSCCCSCCEECTTSCE-EEEETT
T ss_pred CCEeEEEecCCCceeeeEEc--CCC---E-EEEEe--CEEEEEC-CCCcEEEEEc-cCCcceeceEECCCCeE-EEEcCC
Confidence 777766643 3455666665 666 4 45555 7889999 7888777776 34466788888888754 456667
Q ss_pred CcEEEEEc
Q psy10778 534 GLVIIWES 541 (556)
Q Consensus 534 g~V~vwdl 541 (556)
+.|..++.
T Consensus 235 ~gl~~~~~ 242 (330)
T 3hxj_A 235 GHLYAINP 242 (330)
T ss_dssp TEEEEECT
T ss_pred CeEEEECC
Confidence 77877764
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=98.28 E-value=0.0015 Score=67.19 Aligned_cols=238 Identities=9% Similarity=-0.003 Sum_probs=149.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|.+. ....|+..++........+ .....+..++|++.+..|+.+ ...+.|+.+++....... .....+..
T Consensus 85 ~ll~~-~~~~I~~i~l~~~~~~~~~--~~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~-----~~~~~~~~ 156 (400)
T 3p5b_L 85 YLFFT-NRHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----SYDTVISR 156 (400)
T ss_dssp EEEEE-ETTEEEEECTTSCSCEEEE--CSCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------C-----CCEEEECS
T ss_pred eeEEe-ccceeEEEccCCcceeEec--cccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCC-----cceEEEeC
Confidence 44443 3478888888876555444 345678899999866666555 456778888776421000 11223333
Q ss_pred CCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.......+++.+ .+.+.++-...+.|.+.++........+.. . ......|+++|.++.|+.+... ..+.|...+
T Consensus 157 ~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~-~-~~~P~~iavdp~~g~ly~td~~---~~~~I~~~~ 231 (400)
T 3p5b_L 157 DIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-N-GSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGG 231 (400)
T ss_dssp SCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEEC-S-SCCEEEEEEETTTTEEEEEECS---SSCCEEEEE
T ss_pred CCCCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeC-C-CCCcceEEEecccCeEEEEeCC---CCCEEEEEe
Confidence 455678899987 455666666788999999885544333433 2 4568999999987877766410 246888889
Q ss_pred eCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEE
Q psy10778 453 INAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 453 i~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~s 529 (556)
++|.....+. .-.....|+++ +++. ++.++-...+.|..+|+........+.. .......++++. .+.++++
T Consensus 232 ~dG~~~~~~~~~~l~~P~glavd--~~~~--~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywt 306 (400)
T 3p5b_L 232 LNGVDIYSLVTENIQWPNGITLD--LLSG--RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWT 306 (400)
T ss_dssp TTSCSCEEEECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEE
T ss_pred CCCCccEEEEECCCCceEEEEEE--eCCC--EEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEe
Confidence 8876544442 23578899999 6551 4555555678999999854332222221 123456678874 3456666
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
....+.|..++..+++.+..+
T Consensus 307 d~~~~~V~~~~~~~G~~~~~i 327 (400)
T 3p5b_L 307 DIINEAIFSANRLTGSDVNLL 327 (400)
T ss_dssp ESSSCSEEEEESSSCCCCEEE
T ss_pred cCCCCeEEEEEcCCCCceEEE
Confidence 667789999997776655444
|
| >3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A | Back alignment and structure |
|---|
Probab=98.27 E-value=3e-05 Score=74.33 Aligned_cols=159 Identities=9% Similarity=0.046 Sum_probs=115.2
Q ss_pred cEEEEEEccCCCEEEEEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 377 CVTDLYLCAGFSVAVSSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
-...+.|+ ++.+..+.+.+| .|+++|+.+++.++++.. ........+.++++.|..+.. .++.+.+||.+
T Consensus 44 ftqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw----~~~~v~v~D~~ 115 (262)
T 3nol_A 44 FTEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTW----KNGLGFVWNIR 115 (262)
T ss_dssp EEEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEES----SSSEEEEEETT
T ss_pred ccceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEec---CCccceeEEEEeCCEEEEEEe----eCCEEEEEECc
Confidence 35788898 677777877776 899999999999999876 344444434445667766653 68999999997
Q ss_pred -CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-CC---CCeEEEEEecCCCEEEE
Q psy10778 455 -AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-VA---LPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 455 -g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-h~---~~V~~l~~s~dg~~l~s 529 (556)
.+.+.++.....-..++ +++ ..|+.+..++.|.++|..+.+.+.++..+ .. ..+..+.|. +|+..+.
T Consensus 116 t~~~~~ti~~~~eG~glt----~dg---~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan 187 (262)
T 3nol_A 116 NLRQVRSFNYDGEGWGLT----HND---QYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFAN 187 (262)
T ss_dssp TCCEEEEEECSSCCCCEE----ECS---SCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEE
T ss_pred cCcEEEEEECCCCceEEe----cCC---CEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEE
Confidence 88888887654333444 345 45655566789999999999999888741 11 334567887 7766666
Q ss_pred EcCCCcEEEEEcCCCCCcCeee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.-.++.|.+.|..+++.+..+.
T Consensus 188 ~w~~~~I~vIDp~tG~V~~~Id 209 (262)
T 3nol_A 188 VWQTNKIVRIDPETGKVTGIID 209 (262)
T ss_dssp ETTSSEEEEECTTTCBEEEEEE
T ss_pred EccCCeEEEEECCCCcEEEEEE
Confidence 6578899999999987765553
|
| >3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.6e-05 Score=71.17 Aligned_cols=158 Identities=6% Similarity=-0.089 Sum_probs=114.8
Q ss_pred cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-C
Q psy10778 377 CVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-A 455 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g 455 (556)
....+.++ ++.+.++.+.+|.|+++|+.+++.++++ . . .......+.++++.|..+.. .++.+.+||.+ .
T Consensus 56 ftqGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l-~--~~~FgeGit~~g~~Ly~ltw----~~~~v~V~D~~Tl 126 (268)
T 3nok_A 56 FTQGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-R-L--GNIFAEGLASDGERLYQLTW----TEGLLFTWSGMPP 126 (268)
T ss_dssp CEEEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-E-C--TTCCEEEEEECSSCEEEEES----SSCEEEEEETTTT
T ss_pred ccceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-C-C--CCcceeEEEEeCCEEEEEEc----cCCEEEEEECCcC
Confidence 35788887 4678888899999999999999988887 5 2 33444333445556665543 78999999997 8
Q ss_pred cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCC---CCeEEEEEecCCCEEEEEc
Q psy10778 456 QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVA---LPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 456 ~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~---~~V~~l~~s~dg~~l~sgs 531 (556)
+.+.++.....-..+++. + ..|+++..++.|.++|..+.+.+.++.. .+. ..++.+.|. +|+..+..-
T Consensus 127 ~~~~ti~~~~eGwGLt~D----g---~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw 198 (268)
T 3nok_A 127 QRERTTRYSGEGWGLCYW----N---GKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIW 198 (268)
T ss_dssp EEEEEEECSSCCCCEEEE----T---TEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEET
T ss_pred cEEEEEeCCCceeEEecC----C---CEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEEC
Confidence 888888765444455543 5 4666666789999999999999988874 111 245677887 776665555
Q ss_pred CCCcEEEEEcCCCCCcCeee
Q psy10778 532 TEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.+..|.+.|..+++.+..+.
T Consensus 199 ~s~~I~vIDp~TG~V~~~Id 218 (268)
T 3nok_A 199 HSSDVLEIDPATGTVVGVID 218 (268)
T ss_dssp TCSEEEEECTTTCBEEEEEE
T ss_pred CCCeEEEEeCCCCcEEEEEE
Confidence 78899999999988766554
|
| >2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=0.00017 Score=78.05 Aligned_cols=138 Identities=12% Similarity=0.063 Sum_probs=92.3
Q ss_pred cCCC---EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-------------CCe--------------------------
Q psy10778 385 AGFS---VAVSSSEDGTCLLWDINTIGYIREIPCVDPN-------------TPV-------------------------- 422 (556)
Q Consensus 385 ~~~~---~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~-------------~~V-------------------------- 422 (556)
.+|+ .++.++.+|.+.+.|..+|+.+..... . . .++
T Consensus 311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~-~-~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w 388 (571)
T 2ad6_A 311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKV-D-PAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQ 388 (571)
T ss_dssp ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEES-S-TTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCS
T ss_pred cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecc-c-CCccccccccccCCceecccccCCCCCCCceEECCCCccccCC
Confidence 4674 677899999999999999998876543 1 1 111
Q ss_pred eEEEEeCCCCeEEEEeecC-----------------------------c---CCCCeEEEEEeC-CcEEEEeecCCCeEE
Q psy10778 423 SHVTMSETNGEIASVLQTT-----------------------------K---TGGSILRLHTIN-AQLITSLASELRITS 469 (556)
Q Consensus 423 ~~l~~sp~~~~i~s~s~~~-----------------------------~---~~d~~I~iwdi~-g~~i~~~~~~~~i~~ 469 (556)
..++++|+++.+++.+... . ..++.|..||+. |+.+........+.+
T Consensus 389 ~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~ 468 (571)
T 2ad6_A 389 GVDSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWG 468 (571)
T ss_dssp CBCEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCS
T ss_pred CCceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccc
Confidence 2467888888877765310 0 135789999986 888877765544433
Q ss_pred EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 470 i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
.... ..+ ..+++++.||.|+.+|..+++.+.++..+....-.-+.+..+|+.+++
T Consensus 469 ~~~~--t~g---g~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~ 523 (571)
T 2ad6_A 469 GTLY--TKG---GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIG 523 (571)
T ss_dssp BCEE--ETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred eeEE--ECC---CEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEE
Confidence 3333 233 467779999999999999999999987532221222345677765554
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=98.20 E-value=0.00083 Score=66.86 Aligned_cols=230 Identities=7% Similarity=-0.094 Sum_probs=142.7
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
...|+..++................+.+++|.+.+..|+ +-...+.|..++..... .....+........+
T Consensus 12 ~~~I~~i~l~~~~~~~~~~~~~~~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~--------~~~~~~~~~l~~p~g 83 (318)
T 3sov_A 12 RRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--------SVQNVVVSGLLSPDG 83 (318)
T ss_dssp EEEEEEEETTCTTSCCEEEEEEEEEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSS--------CCCEEEEECCSCCCE
T ss_pred cCeEEEEECCCCceEEEEEecCCCccEEEEEEeCCCEEEEEECCCCcEEEEEccCCC--------ceEEEEcCCCCCccE
Confidence 567888888765322222112234567899998655554 44566778777765431 011222223345667
Q ss_pred EEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEE
Q psy10778 381 LYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLIT 459 (556)
Q Consensus 381 l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~ 459 (556)
+++.+. +.+.++-...+.|.+.++........+.. . ......++++|.++.|..+... ..+.|...+.+|....
T Consensus 84 lavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~-~-~~~P~giavdp~~g~ly~td~~---~~~~I~r~~~dG~~~~ 158 (318)
T 3sov_A 84 LACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQ-E-LDQPRAIALDPSSGFMYWTDWG---EVPKIERAGMDGSSRF 158 (318)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECS-S-CSSEEEEEEEGGGTEEEEEECS---SSCEEEEEETTSCSCE
T ss_pred EEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeC-C-CCCccEEEEeCCCCEEEEEecC---CCCEEEEEEcCCCCeE
Confidence 888874 45556666778999999874332222323 2 4678999999987777766410 2578888888875444
Q ss_pred Eee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEE
Q psy10778 460 SLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVI 537 (556)
Q Consensus 460 ~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~ 537 (556)
.+. .-...+.++++ +++. ++.++-+..+.|..+|+.. ...+.+..+......++++.. +.++.+-...+.|.
T Consensus 159 ~~~~~~l~~Pnglavd--~~~~--~lY~aD~~~~~I~~~d~dG-~~~~~~~~~~~~~P~glav~~-~~lywtd~~~~~V~ 232 (318)
T 3sov_A 159 IIINSEIYWPNGLTLD--YEEQ--KLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFE-DILYWTDWSTHSIL 232 (318)
T ss_dssp EEECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTS-CSCEEEECSCCSCEEEEEEET-TEEEEEETTTTEEE
T ss_pred EEEECCCCCccEEEEe--ccCC--EEEEEECCCCEEEEEcCCC-CceEEEecCCCCCceEEEEeC-CEEEEEecCCCeEE
Confidence 432 23467899999 6541 5666666778999999853 323333222345677888863 45566666778999
Q ss_pred EEEcCCCCCcCee
Q psy10778 538 IWESSSHNRTPKF 550 (556)
Q Consensus 538 vwdl~~~~~~~~~ 550 (556)
.++..+++....+
T Consensus 233 ~~~~~~G~~~~~i 245 (318)
T 3sov_A 233 ACNKYTGEGLREI 245 (318)
T ss_dssp EEETTTCCSCEEE
T ss_pred EEECCCCCceEEE
Confidence 9998776654433
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=0.0011 Score=74.67 Aligned_cols=230 Identities=10% Similarity=0.033 Sum_probs=139.7
Q ss_pred eccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCcc
Q psy10778 298 WNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSAC 377 (556)
Q Consensus 298 ~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~ 377 (556)
.|+.++-|..++.++++........+...|.++...++|. |..|+.++-+.+|+...+... ...........-....
T Consensus 188 igt~~~Gl~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~-lwigt~~~Gl~~~~~~~~~~~--~~~~~~~~~~~l~~~~ 264 (795)
T 4a2l_A 188 IGTSTDGLYTYSITQKTFEKVIPILGTKQIQAILQQSPTR-IWVATEGAGLFLINPKTKEIK--NYLHSPSNPKSISSNY 264 (795)
T ss_dssp EEESSSCEEEEETTTCCEEECC----CCCEEEEEEEETTE-EEEEEBSSCEEEEETTTTEEE--EECCCTTCTTSCSCSB
T ss_pred EEECCCCEEEEeCCCCeEEEecCCCCCCeeEEEEEcCCCC-EEEEECCCCeEEEeCCCCeEE--EeecCCCCccccCCCe
Confidence 3555555778887765543322112356788888877765 555555545778876542100 0000000000012356
Q ss_pred EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC------CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 378 VTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC------VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~------~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
|.++...++|.+.+. +.+| |.+||..+++....... .. ...|.++..+++|.. ..|+ .++-|..|
T Consensus 265 i~~i~~d~~g~lWig-t~~G-l~~~~~~~~~~~~~~~~~~~~~~l~-~~~i~~i~~D~~g~l-Wigt-----~~~Gl~~~ 335 (795)
T 4a2l_A 265 IRSLAMDSQNRLWIG-TFND-LNIYHEGTDSFASYSSNPVENGSLS-QRSVRSIFMDSQGGM-WLGT-----YFGGLNYY 335 (795)
T ss_dssp EEEEEECTTSCEEEE-ESSC-EEEEETTTTEEEEECCCTTSTTSCS-SSCEEEEEECTTSCE-EEEE-----SSSCEEEE
T ss_pred EEEEEEcCCCCEEEE-eCCh-hheEcCCCCeEEEEecCCCCCCCCC-CCcEEEEEEeCCcCE-EEEE-----CCCCeEEe
Confidence 999999988875554 4444 88999887654433211 01 356999999888664 4455 56778888
Q ss_pred EeCCcEEEEee--------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-------CCCCCeE
Q psy10778 452 TINAQLITSLA--------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-------NVALPVI 516 (556)
Q Consensus 452 di~g~~i~~~~--------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-------~h~~~V~ 516 (556)
+........+. ....|.+++.. ++| .|..|+.++.|..|+..+++....... -....|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~l~~~~V~~i~~d--~~g----~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~ 409 (795)
T 4a2l_A 336 HPIRNRFKNIRNIPYKNSLSDNVVSCIVED--KDK----NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIK 409 (795)
T ss_dssp CGGGGSSEEECCCTTSSSCSCSSEEEEEEC--TTS----CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEE
T ss_pred CCCcccceEEcCCCCCCCCCCCeeEEEEEC--CCC----CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEE
Confidence 87633232322 13468888877 776 466788887899999876654332210 1236799
Q ss_pred EEEEecCCCEEEEEcCCCcEEEEEcCCCC
Q psy10778 517 AVTYSCDSQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
+++..++|+.|..|+.++-|..|+..+++
T Consensus 410 ~i~~d~~g~~lWigt~~~Gl~~~d~~~~~ 438 (795)
T 4a2l_A 410 AVYVDEKKSLVYIGTHAGGLSILHRNSGQ 438 (795)
T ss_dssp EEEEETTTTEEEEEETTTEEEEEETTTCC
T ss_pred EEEEcCCCCEEEEEeCcCceeEEeCCCCc
Confidence 99999999856667777779999987643
|
| >1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1 | Back alignment and structure |
|---|
Probab=98.18 E-value=2.1e-05 Score=80.07 Aligned_cols=213 Identities=9% Similarity=-0.011 Sum_probs=128.2
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCC------CCceEEEEEcCCCCEEEEEeC--CCcEEE--EEeeeccCcccccccCCCe
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPL------GATIATATTAPDCHTLWLGLT--SGNILV--YEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h------~~~V~~i~~s~dg~~l~tgs~--Dg~I~v--wd~~~~~~~~~~~~~~~~~ 369 (556)
..++.|.+||..+++....+..+. ......++++|||++++++.. +..+.+ +|..+-. ......+..
T Consensus 93 ~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~tv~---~i~v~~~~~ 169 (368)
T 1mda_H 93 KRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQ---LTKSASCFH 169 (368)
T ss_dssp SEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEE---EEECSSCCC
T ss_pred CCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhhce---EEECCCceE
Confidence 357899999999998888775430 123457899999999999874 457888 8875410 000000000
Q ss_pred EeeC---------CCccEEEEE--------------------------EccCCCEEEEEcCCCcEEEEeCCCC--eEEEE
Q psy10778 370 ILLG---------HSACVTDLY--------------------------LCAGFSVAVSSSEDGTCLLWDINTI--GYIRE 412 (556)
Q Consensus 370 ~l~~---------h~~~V~~l~--------------------------~s~~~~~l~sgs~Dg~I~iwdl~~~--~~v~~ 412 (556)
.... -.+.+..+. ..+++..++..+. +.+.+.|+... +.+..
T Consensus 170 ~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P~~~~~~~~~~~vs~-~~V~viD~~~~~~~v~~~ 248 (368)
T 1mda_H 170 IHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVA-SSILQGDIPAAGATMKAA 248 (368)
T ss_dssp CEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBS-SCCEEEECCSSCCEEECC
T ss_pred EccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCccccccCCEEEEEcC-CEEEEEECCCCcceEEEE
Confidence 0000 000000000 1334444444444 77888887643 22332
Q ss_pred eCCC------CC--CCCeeEEEEeCCCCeEEEEee-c-C--cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCC
Q psy10778 413 IPCV------DP--NTPVSHVTMSETNGEIASVLQ-T-T--KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGV 479 (556)
Q Consensus 413 l~~~------h~--~~~V~~l~~sp~~~~i~s~s~-~-~--~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~ 479 (556)
+... +. ......++++++++.++++.. . + -..++.+.++|+. ++.+..+........++++ ++|.
T Consensus 249 ~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~~ViD~~t~~vv~~i~vg~~p~gi~~s--~Dg~ 326 (368)
T 1mda_H 249 IDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAA--QDGA 326 (368)
T ss_dssp CCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECEEEEC--CSSS
T ss_pred EEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCEEEEECCCCeEEEEEECCCCcceEEEC--CCCC
Confidence 3210 00 011223789999998887651 0 0 0001356699997 7888888766689999999 8882
Q ss_pred cceEEEEEe-CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 480 SQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 480 ~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
.++++.. .++.|.++|+.+++.+.++.. ......+++.+
T Consensus 327 --~l~va~~~~~~~VsVID~~t~kvv~~I~v--g~~P~~i~~~~ 366 (368)
T 1mda_H 327 --SDNYANSAGTEVLDIYDAASDQDQSSVEL--DKGPESLSVQN 366 (368)
T ss_dssp --CEEEEEETTTTEEEEEESSSCEEEEECCC--CSCCCEEECCC
T ss_pred --EEEEEccCCCCeEEEEECCCCcEEEEEEC--CCCCCEEEeec
Confidence 3666776 599999999999999999973 24455666654
|
| >3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.18 E-value=0.00022 Score=67.67 Aligned_cols=160 Identities=8% Similarity=-0.015 Sum_probs=115.0
Q ss_pred ccEEEEEEccCCCEEEEEcCCC--cEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDG--TCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg--~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
.....+.|+. +.+..+.+.+| .|+.+|+.+++.++++.. ........+...++.|..... .++.+.+||.
T Consensus 21 ~ftqGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l---~~~~fgeGi~~~~~~ly~ltw----~~~~v~v~D~ 92 (243)
T 3mbr_X 21 AFTEGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEV---PPPYFGAGIVAWRDRLIQLTW----RNHEGFVYDL 92 (243)
T ss_dssp CCEEEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEES----SSSEEEEEET
T ss_pred cccccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeC---CCCcceeEEEEeCCEEEEEEe----eCCEEEEEEC
Confidence 4467899986 56777777754 899999999999998876 344444444444666666653 7899999999
Q ss_pred C-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-CC---CCeEEEEEecCCCEEE
Q psy10778 454 N-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-VA---LPVIAVTYSCDSQHLY 528 (556)
Q Consensus 454 ~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-h~---~~V~~l~~s~dg~~l~ 528 (556)
+ .+++.++.....-..++. ++ ..|+++..++.|.++|..+.+.+.++..+ +. ..++.+.+. +|+..+
T Consensus 93 ~tl~~~~ti~~~~~Gwglt~----dg---~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lya 164 (243)
T 3mbr_X 93 ATLTPRARFRYPGEGWALTS----DD---SHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLA 164 (243)
T ss_dssp TTTEEEEEEECSSCCCEEEE----CS---SCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEE
T ss_pred CcCcEEEEEeCCCCceEEee----CC---CEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEE
Confidence 7 888888876544445553 45 45555667899999999999998888742 11 345677776 676665
Q ss_pred EEcCCCcEEEEEcCCCCCcCeee
Q psy10778 529 ASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 529 sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..-.+..|.+.|..+++.+..+.
T Consensus 165 nvw~s~~I~vIDp~tG~V~~~id 187 (243)
T 3mbr_X 165 NVWLTSRIARIDPASGKVVAWID 187 (243)
T ss_dssp EETTTTEEEEECTTTCBEEEEEE
T ss_pred EECCCCeEEEEECCCCCEEEEEE
Confidence 55567899999999987665543
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=0.00047 Score=74.78 Aligned_cols=212 Identities=10% Similarity=0.038 Sum_probs=128.2
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCC------------------------------------ce-EEEEEcCCCCEEEEEe
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGA------------------------------------TI-ATATTAPDCHTLWLGL 343 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~------------------------------------~V-~~i~~s~dg~~l~tgs 343 (556)
.+|.|+.+|.++++.+-.+...... .+ ...++.++...++.++
T Consensus 180 ~~g~v~A~D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~ 259 (599)
T 1w6s_A 180 VRGYLTAYDVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGT 259 (599)
T ss_dssp CCCEEEEEETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEEC
T ss_pred CCCeEEEEECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeC
Confidence 3899999999998876555432111 00 1345666777888776
Q ss_pred CCC----------------cEEEEEeeeccCcccccccCCCeEee--CC--------CccEEEEEEc-cCC---CEEEEE
Q psy10778 344 TSG----------------NILVYEYELNASTNKIEFCKPPTILL--GH--------SACVTDLYLC-AGF---SVAVSS 393 (556)
Q Consensus 344 ~Dg----------------~I~vwd~~~~~~~~~~~~~~~~~~l~--~h--------~~~V~~l~~s-~~~---~~l~sg 393 (556)
.++ .|..+|..++ +.+-..+ .| ..++. +... .+| ..++.+
T Consensus 260 g~~~p~~~~~r~gd~~y~~sv~Ald~~TG---------~~~W~~q~~~~d~wd~d~~~~p~l-~d~~~~~G~~~~~v~~~ 329 (599)
T 1w6s_A 260 GNPAPWNETMRPGDNKWTMTIFGRDADTG---------EAKFGYQKTPHDEWDYAGVNVMML-SEQKDKDGKARKLLTHP 329 (599)
T ss_dssp CCCSCSCGGGSCSCCTTSSEEEEEETTTC---------CEEEEEESSTTCSSCCCCCCCCEE-EEEECTTSCEEEEEEEE
T ss_pred CCCccccCcccCCCccccceEEEEeCCCC---------ceeeEeecCCCccccccCCCccEE-EeccccCCcEEEEEEEE
Confidence 553 6777777665 1112222 12 12232 2222 467 467889
Q ss_pred cCCCcEEEEeCCCCeEEEEeCCCCC------------CCCe--------------------------eEEEEeCCCCeEE
Q psy10778 394 SEDGTCLLWDINTIGYIREIPCVDP------------NTPV--------------------------SHVTMSETNGEIA 435 (556)
Q Consensus 394 s~Dg~I~iwdl~~~~~v~~l~~~h~------------~~~V--------------------------~~l~~sp~~~~i~ 435 (556)
+.+|.+.+.|..+|+.+..... .+ ..++ ..++++|+.+.++
T Consensus 330 ~~~G~l~~lD~~tG~~lw~~~~-~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~~~~y 408 (599)
T 1w6s_A 330 DRNGIVYTLDRTDGALVSANKL-DDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKRELFF 408 (599)
T ss_dssp CTTSEEEEEETTTCCEEEEEES-STTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTTEEE
T ss_pred CCCcEEEEEECCCCCEeecccc-cCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCCCEEE
Confidence 9999999999999998876542 10 0111 2467788777666
Q ss_pred EEeecC----------------------------cC------CCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCc
Q psy10778 436 SVLQTT----------------------------KT------GGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 436 s~s~~~----------------------------~~------~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~ 480 (556)
+..... .+ ..+.|.-||+. |+.+-.........+-... ..+
T Consensus 409 v~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~--tag-- 484 (599)
T 1w6s_A 409 MGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMA--TAG-- 484 (599)
T ss_dssp EEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEE--ETT--
T ss_pred EeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceE--ecC--
Confidence 542110 00 24688889986 8887776544322211112 123
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEE
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~ 528 (556)
.+++.|+.||.++.+|..+++.+.++..+......-+.+..+|+..+
T Consensus 485 -g~vf~gt~dg~l~A~D~~tG~~lW~~~l~~g~~~~P~~y~~~G~qyv 531 (599)
T 1w6s_A 485 -DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQYV 531 (599)
T ss_dssp -TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred -CEEEEECCCCeEEEEECCCCCEEEEeeCCCCcEeccEEEEeCCEEEE
Confidence 47777999999999999999999988753222223355667886433
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.06 E-value=0.0014 Score=62.73 Aligned_cols=196 Identities=9% Similarity=0.066 Sum_probs=128.2
Q ss_pred CCceEEEEEcCCCCEEEE-EeCCCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 324 GATIATATTAPDCHTLWL-GLTSGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~t-gs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
.+.+..++++|++..|++ ...++.|...|.. + +.++.+. +-....-.|++.+++.++++.-.++.+.+
T Consensus 26 ~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g---------~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~ 95 (255)
T 3qqz_A 26 TNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-G---------DLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYV 95 (255)
T ss_dssp CSCEEEEEEETTTTEEEEEEETTEEEEEEETT-C---------CEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEE
T ss_pred ccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-C---------CEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEE
Confidence 356999999998776655 5667777776765 3 2223332 22256778889888887777667788999
Q ss_pred EeCCCCeE---EEEeC-----CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC----cEEEEee-------
Q psy10778 402 WDINTIGY---IREIP-----CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA----QLITSLA------- 462 (556)
Q Consensus 402 wdl~~~~~---v~~l~-----~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g----~~i~~~~------- 462 (556)
+++..... +.... .+. ......++++|.++.+.++. +.....+|.++| ..+....
T Consensus 96 ~~v~~~~~i~~~~~~~~~~~~~~~-N~g~EGLA~d~~~~~L~va~-----E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~ 169 (255)
T 3qqz_A 96 ISLTPNSEVKILKKIKIPLQESPT-NCGFEGLAYSRQDHTFWFFK-----EKNPIEVYKVNGLLSSNELHISKDKALQRQ 169 (255)
T ss_dssp EEECTTCCEEEEEEEECCCSSCCC-SSCCEEEEEETTTTEEEEEE-----ESSSEEEEEEESTTCSSCCEEEECHHHHHT
T ss_pred EEcCCCCeeeeeeeeccccccccc-cCCcceEEEeCCCCEEEEEE-----CcCCceEEEEcccccCCceeeecchhhccc
Confidence 88765432 22221 112 45678999999998888887 444445555543 1112121
Q ss_pred -cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC--------CCCeEEEEEecCCCEEEEEcCC
Q psy10778 463 -SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV--------ALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 463 -~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h--------~~~V~~l~~s~dg~~l~sgs~D 533 (556)
.-..+.++++.+ ..+ ++++....+..|..+|. +++.+..+.... -...-.|+|.++|+ |+..++.
T Consensus 170 ~~~~d~S~l~~dp-~tg---~lliLS~~s~~L~~~d~-~g~~~~~~~L~~g~~~l~~~~~qpEGia~d~~G~-lyIvsE~ 243 (255)
T 3qqz_A 170 FTLDDVSGAEFNQ-QKN---TLLVLSHESRALQEVTL-VGEVIGEMSLTKGSRGLSHNIKQAEGVAMDASGN-IYIVSEP 243 (255)
T ss_dssp CCSSCCCEEEEET-TTT---EEEEEETTTTEEEEECT-TCCEEEEEECSTTGGGCSSCCCSEEEEEECTTCC-EEEEETT
T ss_pred cccCCceeEEEcC-CCC---eEEEEECCCCeEEEEcC-CCCEEEEEEcCCccCCcccccCCCCeeEECCCCC-EEEEcCC
Confidence 123568899995 344 78888889999999996 566666665321 13568999999998 4555777
Q ss_pred CcEEEEEc
Q psy10778 534 GLVIIWES 541 (556)
Q Consensus 534 g~V~vwdl 541 (556)
..++++.-
T Consensus 244 n~~y~f~~ 251 (255)
T 3qqz_A 244 NRFYRFTP 251 (255)
T ss_dssp TEEEEEEC
T ss_pred ceEEEEEe
Confidence 76666643
|
| >1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00017 Score=78.19 Aligned_cols=241 Identities=10% Similarity=0.017 Sum_probs=139.0
Q ss_pred EEeccCCCeEEEEeCCCCCCcceEcCCCC---CceEE-EEEcCCCCEEEEEe------CCCcEEEEEeeeccCccccccc
Q psy10778 296 ICWNECDNLIRLKMSKELPATPVIRPPLG---ATIAT-ATTAPDCHTLWLGL------TSGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~---~~V~~-i~~s~dg~~l~tgs------~Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
+..++.|+.|..+|.++++.+-....... ..+++ -.. .++ .+++++ .+|.|+-+|..++...-+....
T Consensus 124 V~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v-~~g-~V~vg~~g~e~g~~g~v~A~D~~TG~~~W~~~~~ 201 (599)
T 1w6s_A 124 ILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYV-VKD-KVIIGSSGAELGVRGYLTAYDVKTGEQVWRAYAT 201 (599)
T ss_dssp EEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEE-ETT-EEEECCBCGGGTCCCEEEEEETTTCCEEEEEESS
T ss_pred EEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEE-ECC-EEEEEecccccCCCCeEEEEECCCCcEEEEEcCC
Confidence 66778899999999999987655543210 01211 111 133 555554 3788888887765211000000
Q ss_pred CCCe----------------------------EeeCCCccE-EEEEEccCCCEEEEEcCC----------------CcEE
Q psy10778 366 KPPT----------------------------ILLGHSACV-TDLYLCAGFSVAVSSSED----------------GTCL 400 (556)
Q Consensus 366 ~~~~----------------------------~l~~h~~~V-~~l~~s~~~~~l~sgs~D----------------g~I~ 400 (556)
.... .+..-...+ ..+++.++..+++.++.+ ++|.
T Consensus 202 ~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~ 281 (599)
T 1w6s_A 202 GPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIF 281 (599)
T ss_dssp SCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEE
T ss_pred CCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccCcccCCCccccceEE
Confidence 0000 000000011 134566677777777665 3799
Q ss_pred EEeCCCCeEEEEeCCC-CCCC-------CeeEEEEe-CCC---CeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC--
Q psy10778 401 LWDINTIGYIREIPCV-DPNT-------PVSHVTMS-ETN---GEIASVLQTTKTGGSILRLHTIN-AQLITSLASEL-- 465 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~-h~~~-------~V~~l~~s-p~~---~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~-- 465 (556)
.+|..+|+.+..+... | .. ....+... .+| ..++.++ .+|.++++|.+ |+++.......
T Consensus 282 Ald~~TG~~~W~~q~~~~-d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~-----~~G~l~~lD~~tG~~lw~~~~~~~~ 355 (599)
T 1w6s_A 282 GRDADTGEAKFGYQKTPH-DEWDYAGVNVMMLSEQKDKDGKARKLLTHPD-----RNGIVYTLDRTDGALVSANKLDDTV 355 (599)
T ss_dssp EEETTTCCEEEEEESSTT-CSSCCCCCCCCEEEEEECTTSCEEEEEEEEC-----TTSEEEEEETTTCCEEEEEESSTTC
T ss_pred EEeCCCCceeeEeecCCC-ccccccCCCccEEEeccccCCcEEEEEEEEC-----CCcEEEEEECCCCCEeecccccCCc
Confidence 9999999988766541 2 11 11112222 456 3455566 89999999986 88876654211
Q ss_pred ------------Ce--------------------------EEEEEeeCCCCCcceEEEEE--------------------
Q psy10778 466 ------------RI--------------------------TSVTFSNAPEGVSQNVIVTG-------------------- 487 (556)
Q Consensus 466 ------------~i--------------------------~~i~~s~~pdg~~~~~l~tg-------------------- 487 (556)
.+ ..++++ |+. .++++.
T Consensus 356 ~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~d--p~~---~~~yv~~~~~~~~~~~~~~~~~~g~~ 430 (599)
T 1w6s_A 356 NVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYD--PKR---ELFFMGINHICMDWEPFMLPYKAGQF 430 (599)
T ss_dssp CSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEE--TTT---TEEEEEEECEEEEEEECCCCCCTTSC
T ss_pred ccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCC--CCC---CEEEEeccccceeeecccccccCCcc
Confidence 00 134455 333 222221
Q ss_pred -------------e------CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 488 -------------H------SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 488 -------------~------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+ ..|.|..||+.+++.+.+...+ .+..+-.+...+.+++.++.||.++.||.++++.+-
T Consensus 431 ~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagg~vf~gt~dg~l~A~D~~tG~~lW 508 (599)
T 1w6s_A 431 FVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMER--FAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLW 508 (599)
T ss_dssp CCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred eecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCC--CCccCcceEecCCEEEEECCCCeEEEEECCCCCEEE
Confidence 1 3578999999999998887632 222222233456778889999999999999998876
Q ss_pred eee
Q psy10778 549 KFL 551 (556)
Q Consensus 549 ~~~ 551 (556)
+++
T Consensus 509 ~~~ 511 (599)
T 1w6s_A 509 KFK 511 (599)
T ss_dssp EEE
T ss_pred Eee
Confidence 664
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.00043 Score=74.98 Aligned_cols=60 Identities=13% Similarity=0.197 Sum_probs=45.0
Q ss_pred CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 490 DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 490 dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+|.|..||+.+++.+.+.... .++..-.....+.+++.++.||.++.||.++++.+-+++
T Consensus 465 ~G~l~A~D~~tG~~~W~~~~~--~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~ 524 (582)
T 1flg_A 465 VGSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp SEEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEEECCCCCEEEEecCC--CCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEec
Confidence 588999999999998877632 223222233346788889999999999999998876664
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.05 E-value=0.003 Score=65.57 Aligned_cols=221 Identities=8% Similarity=-0.048 Sum_probs=131.9
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CCc---EEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SGN---ILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~---I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
+.|+.++.+++....... .......++++++|+.|+++.. ++. ..+|-...+. . .....+.. ....
T Consensus 159 ~~I~~id~~~~~v~~~~~--~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~----~---~~~~~l~~-~~~p 228 (430)
T 3tc9_A 159 HPTRLIDFEKEYVSTVYS--GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESG----F---KVITELTK-GQNC 228 (430)
T ss_dssp EEEEEEETTTTEEEEEEC--CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGT----S---CSEEEEEE-CSSC
T ss_pred CcEEEEECCCCEEEEEec--CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCc----e---eeeeeecc-CCCc
Confidence 677777777654443332 4456789999999996666654 221 2222222220 0 10122221 2345
Q ss_pred EEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-
Q psy10778 379 TDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ- 456 (556)
Q Consensus 379 ~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~- 456 (556)
.+++++| ++.++++-..++.|..++...+........ ........++++|++++|..+.. ..+.|..++.++.
T Consensus 229 ~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~-~~~~~P~gia~~pdG~~lyv~d~----~~~~I~~~~~d~~~ 303 (430)
T 3tc9_A 229 NGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTI-QDSGWEFHIQFHPSGNYAYIVVV----NQHYILRSDYDWKT 303 (430)
T ss_dssp CCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEEC-SSSSCCEEEEECTTSSEEEEEET----TTTEEEEEEEETTT
T ss_pred eEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEc-CCCCcceeEEEcCCCCEEEEEEC----CCCEEEEEeCCccc
Confidence 6788999 777777777889999999987654222222 10345789999999996665542 6789999988742
Q ss_pred -E---EEEeecC----------------CCeE-EEEEee------CCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 457 -L---ITSLASE----------------LRIT-SVTFSN------APEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 457 -~---i~~~~~~----------------~~i~-~i~~s~------~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
. +..+... .... .++..+ +++| +++++-..++.|+.++ .+++.......
T Consensus 304 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g---~lyvaD~~n~~I~~i~-~~G~v~~~~g~ 379 (430)
T 3tc9_A 304 KRLTTPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEY---DFYFCDRENHCIRILT-PQGRVTTFAGR 379 (430)
T ss_dssp TEECCCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCE---EEEEEEGGGTEEEEEC-TTSEEEEEEEC
T ss_pred ccccceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCC---eEEEEECCCcEEEEEC-CCCcEEEEEeC
Confidence 1 1111110 1122 455431 1345 6667767778999998 45654433321
Q ss_pred C---C-------------CCCeEEEEEecC-CCEEEEEcCCCcEEEEEcC
Q psy10778 510 N---V-------------ALPVIAVTYSCD-SQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 510 ~---h-------------~~~V~~l~~s~d-g~~l~sgs~Dg~V~vwdl~ 542 (556)
+ . -.....++++++ +.++++-..+++|+.++++
T Consensus 380 g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 429 (430)
T 3tc9_A 380 GSNGTSGYNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE 429 (430)
T ss_dssp CTTSSSSCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred CCCCCCcccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence 0 0 125789999994 6666666667889888764
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=98.05 E-value=0.0017 Score=63.87 Aligned_cols=215 Identities=9% Similarity=0.032 Sum_probs=124.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCc--EEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGN--ILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~--I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++++...++.|..++..+. ....+. .......+++.++|+++++...... |..++...+ +. +.+..+
T Consensus 45 lyv~d~~~~~I~~~d~~g~-~~~~~~--~~~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g----~~---~~~~~~- 113 (306)
T 2p4o_A 45 IFVTNHEVGEIVSITPDGN-QQIHAT--VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG----TV---ETLLTL- 113 (306)
T ss_dssp EEEEETTTTEEEEECTTCC-EEEEEE--CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS----CE---EEEEEC-
T ss_pred EEEEeCCCCeEEEECCCCc-eEEEEe--CCCCceeEEEcCCCcEEEEeccCCcceEEEEcCCCC----eE---EEEEeC-
Confidence 3444445677877876643 222332 2346889999999996665543333 444443332 11 000111
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE-EEEe-------CCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY-IREI-------PCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~-v~~l-------~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
........++..+++..+++-..++.|.++|...++. +... .....-.....+ +++++.+..+.. .
T Consensus 114 ~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~----~ 187 (306)
T 2p4o_A 114 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNT----E 187 (306)
T ss_dssp TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEET----T
T ss_pred CCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeC----C
Confidence 1122234555555555566666789999999876532 2111 110001234555 888887766653 6
Q ss_pred CCeEEEEEeCC--cE--EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCCeEEE
Q psy10778 445 GSILRLHTINA--QL--ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL--TLNTNVALPVIAV 518 (556)
Q Consensus 445 d~~I~iwdi~g--~~--i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l 518 (556)
.+.|..+++++ .. ...+........++++ ++| +++++....+.|.++|.. ++... .+. ......+++
T Consensus 188 ~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd--~dG---~l~va~~~~~~V~~~~~~-G~~~~~~~~~-~~~~~p~~~ 260 (306)
T 2p4o_A 188 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD--VEG---NLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAV 260 (306)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB--TTC---CEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEE
T ss_pred CCEEEEEEeCCCCCCCccEEEeccCCCCCeEEC--CCC---CEEEEeCCCCeEEEECCC-CCEEEEeecc-cccCCceEE
Confidence 78999999863 21 1111112355678888 888 787777778899999974 66533 343 223568999
Q ss_pred EEe---cCCCEEEEEcCC
Q psy10778 519 TYS---CDSQHLYASNTE 533 (556)
Q Consensus 519 ~~s---~dg~~l~sgs~D 533 (556)
+|. ++++.|+.++..
T Consensus 261 a~~g~~~d~~~LyVt~~~ 278 (306)
T 2p4o_A 261 AFGQTEGDCTAIYVVTNG 278 (306)
T ss_dssp EECCSTTTTTEEEEEECT
T ss_pred EEecccCCCCEEEEECCC
Confidence 999 888777776654
|
| >1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00049 Score=74.51 Aligned_cols=138 Identities=14% Similarity=0.169 Sum_probs=89.6
Q ss_pred cCCC---EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-------------CC---------------------------
Q psy10778 385 AGFS---VAVSSSEDGTCLLWDINTIGYIREIPCVDPN-------------TP--------------------------- 421 (556)
Q Consensus 385 ~~~~---~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~-------------~~--------------------------- 421 (556)
.+|+ .++.++.+|.+.++|..+|+.+..... . . .+
T Consensus 331 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~-~-~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~ 408 (582)
T 1flg_A 331 KDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPF-V-DNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF 408 (582)
T ss_dssp SSSCEEEEEEEECTTSEEEEEETTTCCEEEEEES-S-SCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred CCCCEEEEEEEECCCceEEEEECCCCCEeccccc-c-cCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence 4664 788899999999999999998866543 2 1 00
Q ss_pred -----eeEEEEeCCCCeEEEEeecC----------------------------cCCCCeEEEEEeC-CcEEEEeecCCCe
Q psy10778 422 -----VSHVTMSETNGEIASVLQTT----------------------------KTGGSILRLHTIN-AQLITSLASELRI 467 (556)
Q Consensus 422 -----V~~l~~sp~~~~i~s~s~~~----------------------------~~~d~~I~iwdi~-g~~i~~~~~~~~i 467 (556)
-..++++|+.+.+++..... ....+.|.-||++ |+.+-.......+
T Consensus 409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~ 488 (582)
T 1flg_A 409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL 488 (582)
T ss_dssp TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence 01356677766666543210 0135789999986 8888776554333
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
..-... ..+ .+++.|+.||.++.||..+++.+.++..+....-.-+.+..+|+..++
T Consensus 489 ~~g~~~--tag---glvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv~ 545 (582)
T 1flg_A 489 WAGVLA--TAG---NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYLG 545 (582)
T ss_dssp CSCCEE--ETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEE
T ss_pred cccceE--eCC---CEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEEE
Confidence 222222 123 478889999999999999999999987532111223566778865443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.003 Score=65.70 Aligned_cols=219 Identities=9% Similarity=-0.052 Sum_probs=130.7
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC---cEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG---NILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg---~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
+.|+.++..++...... ........++++++|+ |+.+...+ .-.++.+...... .....+. ......
T Consensus 162 ~~I~~id~~~g~v~~~~--~~~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~~~~------~~~~~~~-~~~~P~ 231 (433)
T 4hw6_A 162 DAFRHVDFVNQYVDIKT--TNIGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRASGF------TERLSLC-NARGAK 231 (433)
T ss_dssp SCEEEEETTTTEEEEEC--CCCSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGGGTT------CCEEEEE-ECSSBC
T ss_pred CCEEEEECCCCEEEEee--cCCCCccEEEECCCCC-EEEEcCCCCcccceEEEEECCCCe------ecccccc-ccCCCC
Confidence 66667776655443332 2445688999999999 44444321 1122222211000 0001222 233456
Q ss_pred EEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEe-CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC---
Q psy10778 380 DLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREI-PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--- 454 (556)
Q Consensus 380 ~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l-~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--- 454 (556)
.+++++ ++.+.++-..++.|..+|..++.....+ .. ........++++|+++.|..+.. ..+.|+.++.+
T Consensus 232 giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~-~~~~~~~~ia~dpdG~~LYvad~----~~~~I~~~~~d~~~ 306 (433)
T 4hw6_A 232 TCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMM-DTKGSNFHIVWHPTGDWAYIIYN----GKHCIYRVDYNRET 306 (433)
T ss_dssp CCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEEC-SCCSSCEEEEECTTSSEEEEEET----TTTEEEEEEBCTTT
T ss_pred EEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEecc-CCCCCcccEEEeCCCCEEEEEeC----CCCEEEEEeCCCCC
Confidence 788999 6777667667889999999877653332 22 10233457999999996666542 67889998876
Q ss_pred CcE--EEEeec----------------CCCeEEEEE---------eeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 455 AQL--ITSLAS----------------ELRITSVTF---------SNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 455 g~~--i~~~~~----------------~~~i~~i~~---------s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
+.. ...+.. -.....+++ . .+| +++++-..++.|+.++. ++......
T Consensus 307 ~~~~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd--~~g---~lyvaD~~n~~I~~~~~-~G~v~t~~ 380 (433)
T 4hw6_A 307 GKLAVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEE--DEY---DFYFCDRDSHTVRVLTP-EGRVTTYA 380 (433)
T ss_dssp CCBCCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSS--CCE---EEEEEETTTTEEEEECT-TSEEEEEE
T ss_pred cccCcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccC--CCC---cEEEEECCCCEEEEECC-CCCEEEEE
Confidence 211 111111 123567888 5 667 77777778889999985 66443332
Q ss_pred cCCC----------------CCCeEEEEEe-cCCCEEEEEcCCCcEEEEEcC
Q psy10778 508 NTNV----------------ALPVIAVTYS-CDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 508 ~~~h----------------~~~V~~l~~s-~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
..+. -.....|+++ ++|.++++-..+++|+.++++
T Consensus 381 G~g~~~~~G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e 432 (433)
T 4hw6_A 381 GRGNSREWGYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE 432 (433)
T ss_dssp CCCTTCSSCCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred eCCCCCccccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence 1110 1247899999 677777777777899988875
|
| >2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A* | Back alignment and structure |
|---|
Probab=97.96 E-value=0.00074 Score=66.96 Aligned_cols=198 Identities=10% Similarity=-0.038 Sum_probs=119.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--------------------CCCccEEEEEEcc
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL--------------------GHSACVTDLYLCA 385 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~--------------------~h~~~V~~l~~s~ 385 (556)
...++++.++|++++++..++.|..|+...+. ...+. .......++++.+
T Consensus 20 ~p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~----------~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~ 89 (322)
T 2fp8_A 20 APNSFTFDSTNKGFYTSVQDGRVIKYEGPNSG----------FVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNL 89 (322)
T ss_dssp CCCCEECCTTCSSEEEECTTSEEEEECCTTTC----------EEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEET
T ss_pred CceEEEEcCCCCEEEEEcCCCeEEEECCCCCc----------eEEEecccccccccccccccchhccccCCCCceEEEcC
Confidence 34578888998878888888999888765321 11111 0113578899997
Q ss_pred -CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC---CCCCCeeEEEEeC-CCCeEEEEeecC------------cCCCCeE
Q psy10778 386 -GFSVAVSSSEDGTCLLWDINTIGYIREIPCV---DPNTPVSHVTMSE-TNGEIASVLQTT------------KTGGSIL 448 (556)
Q Consensus 386 -~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~---h~~~~V~~l~~sp-~~~~i~s~s~~~------------~~~d~~I 448 (556)
++.++++ ...+.+..+|..+++ +..+... ........+++.+ +|...++-.... ....+.|
T Consensus 90 ~~g~l~v~-d~~~~i~~~d~~~g~-~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v 167 (322)
T 2fp8_A 90 QNNQLYIV-DCYYHLSVVGSEGGH-ATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRL 167 (322)
T ss_dssp TTTEEEEE-ETTTEEEEECTTCEE-CEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEE
T ss_pred CCCcEEEE-ECCCCEEEEeCCCCE-EEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceE
Confidence 6655544 444558888877553 2222110 0013478899999 887666543100 0023678
Q ss_pred EEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEE-eCCCeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecCC
Q psy10778 449 RLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTG-HSDGTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 449 ~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg-~~dg~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~dg 524 (556)
..+|..+..+..+ ..-.....++++ ++| +.|+++ +.++.|..+++.... ....+.. ..+ ...++++++|
T Consensus 168 ~~~d~~~~~~~~~~~~~~~p~gia~~--~dg---~~lyv~d~~~~~I~~~~~~~~~~~~~~~~~~-~~g-P~gi~~d~~G 240 (322)
T 2fp8_A 168 IKYDPSTKETTLLLKELHVPGGAEVS--ADS---SFVLVAEFLSHQIVKYWLEGPKKGTAEVLVK-IPN-PGNIKRNADG 240 (322)
T ss_dssp EEEETTTTEEEEEEEEESCCCEEEEC--TTS---SEEEEEEGGGTEEEEEESSSTTTTCEEEEEE-CSS-EEEEEECTTS
T ss_pred EEEeCCCCEEEEeccCCccCcceEEC--CCC---CEEEEEeCCCCeEEEEECCCCcCCccceEEe-CCC-CCCeEECCCC
Confidence 8888863333322 223456779999 888 655544 567899999986421 1122211 123 7889999999
Q ss_pred CEEEEEcC----------CCcEEEEEcC
Q psy10778 525 QHLYASNT----------EGLVIIWESS 542 (556)
Q Consensus 525 ~~l~sgs~----------Dg~V~vwdl~ 542 (556)
++.++... .+.|..+|..
T Consensus 241 ~l~va~~~~~~~~~~~~~~~~v~~~d~~ 268 (322)
T 2fp8_A 241 HFWVSSSEELDGNMHGRVDPKGIKFDEF 268 (322)
T ss_dssp CEEEEEEEETTSSTTSCEEEEEEEECTT
T ss_pred CEEEEecCcccccccCCCccEEEEECCC
Confidence 87766544 3567777653
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.95 E-value=0.01 Score=66.42 Aligned_cols=232 Identities=9% Similarity=-0.017 Sum_probs=142.3
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
...|+..++.......++ .....+..+++.+.+..|+ +-...+.|+.+++......+ .....+.........
T Consensus 403 ~~~Ir~i~l~~~~~~~l~--~~~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~-----~~~~vi~~~l~~P~G 475 (791)
T 3m0c_C 403 RHEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----SYDTVISRDIQAPDG 475 (791)
T ss_dssp BSSEEEECTTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCE
T ss_pred ccceeEeeccCCcceeee--cCCCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCc-----ceeEEEecCCCCcce
Confidence 456777777765554444 3456678999998655555 44556778888776421000 112233334456678
Q ss_pred EEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEE
Q psy10778 381 LYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLIT 459 (556)
Q Consensus 381 l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~ 459 (556)
|++.+.++ +.++-...+.|.+.++........+.. . ......|+++|.++.|+.+... ..+.|...+++|....
T Consensus 476 LAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~-~-l~~P~gIaVDp~~g~LYwtD~g---~~~~I~~~~~dG~~~~ 550 (791)
T 3m0c_C 476 LAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-N-GSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGVDIY 550 (791)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-T-TCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTSCCEE
T ss_pred eeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeC-C-CCCcceEEEecCCCCEEEecCC---CCCeEEEEecCCCceE
Confidence 99987764 555666788999999985433333333 2 4568999999987777766420 2368999999876655
Q ss_pred Eeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 460 SLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 460 ~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
.+.. -.....|+++ +.+. +++++-...+.|...++........+.. +.-....+|++.. ++++++-...+.|
T Consensus 551 ~lv~~~l~~P~GLavD--~~~~--~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I 625 (791)
T 3m0c_C 551 SLVTENIQWPNGITLD--LLSG--RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAI 625 (791)
T ss_dssp EEECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEE
T ss_pred EEEeCCCCCceEEEEe--cCCC--eEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEE
Confidence 5532 3578899999 5441 5555555678899999854333333321 1223456777743 3455555566888
Q ss_pred EEEEcCCCCCcCee
Q psy10778 537 IIWESSSHNRTPKF 550 (556)
Q Consensus 537 ~vwdl~~~~~~~~~ 550 (556)
...+..+++.+..+
T Consensus 626 ~~~dk~tG~~~~~l 639 (791)
T 3m0c_C 626 FSANRLTGSDVNLL 639 (791)
T ss_dssp EEEETTTCCCCEEE
T ss_pred EEEeCCCCcceEEe
Confidence 88887776555444
|
| >3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.0065 Score=61.12 Aligned_cols=192 Identities=8% Similarity=-0.064 Sum_probs=120.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+..+....+.|+.++..+......+. ........+++.+.+..| ++-...+.|.+.+.+.. .....+..
T Consensus 87 ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~---------~~~~l~~~ 156 (349)
T 3v64_C 87 VFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------HRKVLLWQ 156 (349)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECT
T ss_pred EEEEeccCCceEEEecCCCCceEEEe-CCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCC---------ceEEEEeC
Confidence 33334456778778777654443333 223445688888755554 45455678888876643 11122233
Q ss_pred CCccEEEEEEccCCCE-EEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSV-AVSSSED-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~-l~sgs~D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.......++++|.+.. .++-... +.|...++.. .....+.... -.....++++++++.|..+.. ..+.|..+
T Consensus 157 ~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG-~~~~~~~~~~-~~~PnGla~d~~~~~lY~aD~----~~~~I~~~ 230 (349)
T 3v64_C 157 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDG-SGRRIIADTH-LFWPNGLTIDYAGRRMYWVDA----KHHVIERA 230 (349)
T ss_dssp TCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTS-CSCEESCCSS-CSCEEEEEEETTTTEEEEEET----TTTEEEEE
T ss_pred CCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCC-CCcEEEEECC-CCCcceEEEeCCCCEEEEEEC----CCCEEEEE
Confidence 4456789999986554 4454444 7888888763 3333432202 356789999998888877753 56789999
Q ss_pred EeCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 452 TINAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 452 di~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
|++|.....+. .......+++. ++ .++++-...+.|..++..+++....+.
T Consensus 231 ~~dG~~~~~~~~~~~~~P~giav~---~~---~ly~td~~~~~V~~~~~~~G~~~~~i~ 283 (349)
T 3v64_C 231 NLDGSHRKAVISQGLPHPFAITVF---ED---SLYWTDWHTKSINSANKFTGKNQEIIR 283 (349)
T ss_dssp ETTSCSCEEEECSSCSSEEEEEEE---TT---EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred eCCCCceEEEEeCCCCCceEEEEE---CC---EEEEecCCCCeEEEEEccCCCccEEec
Confidence 99865433332 23466778875 34 677777788899999876776655554
|
| >4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A* | Back alignment and structure |
|---|
Probab=97.90 E-value=0.02 Score=64.23 Aligned_cols=219 Identities=8% Similarity=-0.020 Sum_probs=138.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-------CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-------PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-------~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
-+=.|+.++-|..++..+++....... -....|.+++..++|+.|..|+.++-|.+|+..++.
T Consensus 369 ~lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~---------- 438 (795)
T 4a2l_A 369 NLWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQ---------- 438 (795)
T ss_dssp CEEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETTTCC----------
T ss_pred CEEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCc----------
Confidence 344566676788888776654332211 123579999998888867778877778888866431
Q ss_pred CeEee-----CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC-----CCCCCCCeeEEEEeCCCCeEEEE
Q psy10778 368 PTILL-----GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP-----CVDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 368 ~~~l~-----~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~-----~~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
...+. .....|.++...+++.+.+... + -+.+||..+++...... ... ...|.++...+++...+ +
T Consensus 439 ~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~-~-Gl~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~i~~d~~g~lWi-g 514 (795)
T 4a2l_A 439 VENFNQRNSQLVNENVYAILPDGEGNLWLGTL-S-ALVRFNPEQRSFTTIEKEKDGTPVV-SKQITTLFRDSHKRLWI-G 514 (795)
T ss_dssp EEEECTTTSCCSCSCEEEEEECSSSCEEEEES-S-CEEEEETTTTEEEECCBCTTCCBCC-CCCEEEEEECTTCCEEE-E
T ss_pred EEEeecCCCCcCCCeeEEEEECCCCCEEEEec-C-ceeEEeCCCCeEEEccccccccccC-CceEEEEEECCCCCEEE-E
Confidence 11111 2345799999988888655544 4 48889988765433211 101 35788998888776554 4
Q ss_pred eecCcCCCCeEEEEEeCCcEEEEee--------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 438 LQTTKTGGSILRLHTINAQLITSLA--------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~g~~i~~~~--------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
+ . +-|..||.++... .+. ....|.++... ++| + |..|+.+ .|..||..+++.. .+..
T Consensus 515 t-----~-~Gl~~~~~~~~~~-~~~~~~~~~~l~~~~i~~i~~d--~~g---~-lWigT~~-Gl~~~d~~~~~~~-~~~~ 579 (795)
T 4a2l_A 515 G-----E-EGLSVFKQEGLDI-QKASILPVSNVTKLFTNCIYEA--SNG---I-IWVGTRE-GFYCFNEKDKQIK-RYNT 579 (795)
T ss_dssp E-----S-SCEEEEEEETTEE-EECCCSCSCGGGGSCEEEEEEC--TTS---C-EEEEESS-CEEEEETTTTEEE-EECG
T ss_pred e-----C-CceEEEeCCCCeE-EEecCCCCCCCCCCeeEEEEEC--CCC---C-EEEEeCC-CceeECCCCCcEE-EeCC
Confidence 4 4 4688888874444 332 13468888877 777 4 4445544 5788887666543 3321
Q ss_pred --C-CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 510 --N-VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 510 --~-h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
+ ....|.++..+++|.+.+++ . +-|..|+..+.
T Consensus 580 ~~gl~~~~i~~i~~d~~g~lWi~t-~-~Gl~~~~~~~~ 615 (795)
T 4a2l_A 580 TNGLPNNVVYGILEDSFGRLWLST-N-RGISCFNPETE 615 (795)
T ss_dssp GGTCSCSCEEEEEECTTSCEEEEE-T-TEEEEEETTTT
T ss_pred CCCCchhheEEEEECCCCCEEEEc-C-CceEEEcCCCC
Confidence 2 13568999999999876655 3 45777887653
|
| >1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=0.012 Score=58.13 Aligned_cols=191 Identities=10% Similarity=-0.058 Sum_probs=118.9
Q ss_pred eEEeccCCCeEEEEeCCC----CCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKE----LPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~----~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+..+....+.|..++..+ ......+. ........+++.+.+..| ++-...+.|.+.+.+.. ....
T Consensus 44 ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~-~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~---------~~~~ 113 (316)
T 1ijq_A 44 IYWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKT 113 (316)
T ss_dssp EEEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------SEEE
T ss_pred EEEEECCCCcEEEEECCCCCCCcccEEEEe-CCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCC---------ceEE
Confidence 344445567888888765 22222222 222445788888655555 45466788888886532 1111
Q ss_pred EeeCCCccEEEEEEccCCCEEEEEcC-C-CcEEEEeCCCCeEEEEe-CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 370 ILLGHSACVTDLYLCAGFSVAVSSSE-D-GTCLLWDINTIGYIREI-PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 370 ~l~~h~~~V~~l~~s~~~~~l~sgs~-D-g~I~iwdl~~~~~v~~l-~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
.+.........+++.|.+..|..+.. . +.|...++. |...+.+ .. . -.....++++++++.|..+.. ..+
T Consensus 114 ~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~d-G~~~~~~~~~-~-~~~P~gla~d~~~~~lY~~D~----~~~ 186 (316)
T 1ijq_A 114 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLN-GVDIYSLVTE-N-IQWPNGITLDLLSGRLYWVDS----KLH 186 (316)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETT-SCCEEEEECS-S-CSCEEEEEEETTTTEEEEEET----TTT
T ss_pred EEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCC-CCCeEEEEEC-C-CCCceEEEEeccCCEEEEEEC----CCC
Confidence 22233456789999986665544443 3 678888876 4444433 22 2 456889999998888877753 567
Q ss_pred eEEEEEeCCcEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 447 ILRLHTINAQLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 447 ~I~iwdi~g~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
.|..+|.+|.....+. .-.....+++. . + .++++....+.|..++..+++.+..+.
T Consensus 187 ~I~~~d~dg~~~~~~~~~~~~~~~P~giav~--~-~---~ly~~d~~~~~V~~~~~~~g~~~~~i~ 246 (316)
T 1ijq_A 187 SISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E-D---KVFWTDIINEAIFSANRLTGSDVNLLA 246 (316)
T ss_dssp EEEEEETTSCSCEEEEECTTTTSSEEEEEEE--T-T---EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred eEEEEecCCCceEEEeecCCccCCcEEEEEE--C-C---EEEEEECCCCeEEEEeCCCCcceEEEe
Confidence 9999999864433332 12456788886 3 4 677788788999999987777666654
|
| >3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli} | Back alignment and structure |
|---|
Probab=97.87 E-value=0.0031 Score=60.41 Aligned_cols=192 Identities=10% Similarity=0.029 Sum_probs=122.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+.+....++.|...|.. ++....+...-....-.+++.+++.++++.-.++.+.++++.....................
T Consensus 41 L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~ 119 (255)
T 3qqz_A 41 LFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPT 119 (255)
T ss_dssp EEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCC
T ss_pred EEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccc
Confidence 55555567788888887 66666665443456778888888876666556678888887654210000000000000123
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCC---CCeEEEEeC------CCCCCCCeeEEEEeCCCCeEEEEeecCcCCC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDIN---TIGYIREIP------CVDPNTPVSHVTMSETNGEIASVLQTTKTGG 445 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~---~~~~v~~l~------~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d 445 (556)
....-.|+|+|.++.|.++.+.....+|.+. ....+..+. ..+ ...+..++++|..+.+.+.+. .+
T Consensus 120 N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~-~~d~S~l~~dp~tg~lliLS~----~s 194 (255)
T 3qqz_A 120 NCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFT-LDDVSGAEFNQQKNTLLVLSH----ES 194 (255)
T ss_dssp SSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCC-SSCCCEEEEETTTTEEEEEET----TT
T ss_pred cCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccc-cCCceeEEEcCCCCeEEEEEC----CC
Confidence 4557899999999877777766555555543 111122110 102 346789999999888887775 77
Q ss_pred CeEEEEEeCCcEEEEeecC----------CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 446 SILRLHTINAQLITSLASE----------LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 446 ~~I~iwdi~g~~i~~~~~~----------~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
+.|..+|.+|+.+..+... .....|++. ++| ++.++ ++...++.+..
T Consensus 195 ~~L~~~d~~g~~~~~~~L~~g~~~l~~~~~qpEGia~d--~~G---~lyIv-sE~n~~y~f~~ 251 (255)
T 3qqz_A 195 RALQEVTLVGEVIGEMSLTKGSRGLSHNIKQAEGVAMD--ASG---NIYIV-SEPNRFYRFTP 251 (255)
T ss_dssp TEEEEECTTCCEEEEEECSTTGGGCSSCCCSEEEEEEC--TTC---CEEEE-ETTTEEEEEEC
T ss_pred CeEEEEcCCCCEEEEEEcCCccCCcccccCCCCeeEEC--CCC---CEEEE-cCCceEEEEEe
Confidence 8999999999988777533 267899999 888 65555 66666666643
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=0.012 Score=64.18 Aligned_cols=234 Identities=7% Similarity=-0.092 Sum_probs=147.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
+|.++ ..+.|+..++++......+.......+..++|++.+..|+.+ ..++.|..+++... .....+..
T Consensus 8 ~Ll~s-~~~~I~~i~l~~~~~~~~~~~~~~~~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~---------~~~~v~~~ 77 (628)
T 4a0p_A 8 FLLFS-RRADIRRISLETNNNNVAIPLTGVKEASALDFDVTDNRIYWTDISLKTISRAFMNGS---------ALEHVVEF 77 (628)
T ss_dssp EEEEE-ETTEEEEEESSCTTCEEECCCCSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECS
T ss_pred EEEEE-eCCcEEEEECCCCCcceEEEcCCCCceEEEEEECCCCEEEEEECCCCeEEEEECCCC---------CcEEEEeC
Confidence 44443 567888888886554333333344568899999876666554 45678877776542 11122222
Q ss_pred CCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.......+++.+.+. +.++-...+.|.+.++........+.. . -.....|+++|..+.|..+... ..+.|...+
T Consensus 78 g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~-~-l~~P~~iavdp~~G~lY~tD~g---~~~~I~r~~ 152 (628)
T 4a0p_A 78 GLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWK-D-LDSPRALALDPAEGFMYWTEWG---GKPKIDRAA 152 (628)
T ss_dssp SCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECS-S-CCCEEEEEEETTTTEEEEEECS---SSCEEEEEE
T ss_pred CCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeC-C-CCCcccEEEccCCCeEEEeCCC---CCCEEEEEe
Confidence 224567888887655 555656678899999874332222323 2 4668999999977777766410 256788888
Q ss_pred eCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 453 INAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 453 i~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
++|.....+ ..-.....++++ +++. ++.++-...+.|...|+..... ..+. .......++++.. +.++++-.
T Consensus 153 ~dG~~~~~l~~~~~~P~GlalD--~~~~--~LY~aD~~~~~I~~~d~dG~~~-~v~~-~~l~~P~glav~~-~~ly~tD~ 225 (628)
T 4a0p_A 153 MDGSERTTLVPNVGRANGLTID--YAKR--RLYWTDLDTNLIESSNMLGLNR-EVIA-DDLPHPFGLTQYQ-DYIYWTDW 225 (628)
T ss_dssp TTSCSCEEEECSCSSEEEEEEE--TTTT--EEEEEETTTTEEEEEETTSCSC-EEEE-ECCSCEEEEEEET-TEEEEEET
T ss_pred CCCCceEEEECCCCCcceEEEc--cccC--EEEEEECCCCEEEEEcCCCCce-EEee-ccCCCceEEEEEC-CEEEEecC
Confidence 886544333 344678899999 6541 5556666778999999854333 2333 2234567888875 45555555
Q ss_pred CCCcEEEEEcCCCCCcCee
Q psy10778 532 TEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~ 550 (556)
..+.|...|..+++....+
T Consensus 226 ~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 226 SRRSIERANKTSGQNRTII 244 (628)
T ss_dssp TTTEEEEEETTTCCSCEEE
T ss_pred CCCEEEEEECCCCCceEEE
Confidence 6789999998776654444
|
| >2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3 | Back alignment and structure |
|---|
Probab=97.86 E-value=0.0028 Score=62.34 Aligned_cols=193 Identities=9% Similarity=-0.055 Sum_probs=116.9
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--CcEEEE
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED--GTCLLW 402 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D--g~I~iw 402 (556)
.....++|+++|+++++-..++.|..|+.... . ...........++++.++++++++.... ..|..+
T Consensus 32 ~~pegia~~~~g~lyv~d~~~~~I~~~d~~g~----------~-~~~~~~~~~p~gia~~~dG~l~vad~~~~~~~v~~~ 100 (306)
T 2p4o_A 32 TFLENLASAPDGTIFVTNHEVGEIVSITPDGN----------Q-QIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSL 100 (306)
T ss_dssp CCEEEEEECTTSCEEEEETTTTEEEEECTTCC----------E-EEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred CCcceEEECCCCCEEEEeCCCCeEEEECCCCc----------e-EEEEeCCCCceeEEEcCCCcEEEEeccCCcceEEEE
Confidence 34678999999987777667888888875432 0 1111223468899999999976665433 247777
Q ss_pred eCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc--EEEEee----------cCCCeEEE
Q psy10778 403 DINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ--LITSLA----------SELRITSV 470 (556)
Q Consensus 403 dl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~--~i~~~~----------~~~~i~~i 470 (556)
|..+++.......+. ......++..+++..+++-. ..+.|+.+|..+. .+.... .-.....+
T Consensus 101 d~~~g~~~~~~~~~~-~~~~~g~~~~~~~~~~v~d~-----~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi 174 (306)
T 2p4o_A 101 VKSDGTVETLLTLPD-AIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL 174 (306)
T ss_dssp ECTTSCEEEEEECTT-CSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE
T ss_pred cCCCCeEEEEEeCCC-ccccCcccccCCCcEEEEEC-----CCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc
Confidence 877776543332201 23345566555444344333 4788888887632 121110 01234555
Q ss_pred EEeeCCCCCcceEEEEEeCCCeEEEEeCCC-CeE--EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-LAH--LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 471 ~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
+ +++. .++++-...+.|..+++.. ++. ...+.. ......++++++|++.++....+.|.+++..
T Consensus 175 --s--~dg~--~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~--~~~P~gi~vd~dG~l~va~~~~~~V~~~~~~ 241 (306)
T 2p4o_A 175 --K--RFGN--FLYVSNTEKMLLLRIPVDSTDKPGEPEIFVE--QTNIDDFAFDVEGNLYGATHIYNSVVRIAPD 241 (306)
T ss_dssp --E--EETT--EEEEEETTTTEEEEEEBCTTSCBCCCEEEEE--SCCCSSEEEBTTCCEEEECBTTCCEEEECTT
T ss_pred --C--cCCC--EEEEEeCCCCEEEEEEeCCCCCCCccEEEec--cCCCCCeEECCCCCEEEEeCCCCeEEEECCC
Confidence 5 5551 4556666778999999864 321 122211 1345678999999887777778899999875
|
| >3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.0042 Score=63.50 Aligned_cols=203 Identities=7% Similarity=-0.086 Sum_probs=123.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++.+....+.|+.++..+......+. ........+++.+.+..| ++-...+.|.+.+++.. .....+..
T Consensus 130 ly~~D~~~~~I~r~~~~g~~~~~~~~-~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~---------~~~~l~~~ 199 (386)
T 3v65_B 130 VFWSDVTLDRILRANLNGSNVEEVVS-TGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGA---------HRKVLLWQ 199 (386)
T ss_dssp EEEEETTTTEEEEEETTSCCEEEEEC-SSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSC---------SCEEEECS
T ss_pred EEEEeCCCCcEEEEecCCCCcEEEEe-CCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCC---------ceEEeecC
Confidence 33344556777778777554333332 223345678888755555 44455667777665532 11122333
Q ss_pred CCccEEEEEEccCCCEEEEE-cCC-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSS-SED-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sg-s~D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.......+++.|.+..|..+ ... +.|...++........+.. . -.....|+++++++.|..+.. ..+.|..+
T Consensus 200 ~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~-~-~~~PnGlavd~~~~~lY~aD~----~~~~I~~~ 273 (386)
T 3v65_B 200 SLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADT-H-LFWPNGLTIDYAGRRMYWVDA----KHHVIERA 273 (386)
T ss_dssp SCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS-S-CSCEEEEEEEGGGTEEEEEET----TTTEEEEE
T ss_pred CCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEEC-C-CCCeeeEEEeCCCCEEEEEEC----CCCEEEEE
Confidence 34567899999866655444 344 6788888874332223332 2 456789999998888877753 66889999
Q ss_pred EeCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 452 TINAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 452 di~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
|++|.....+. .......+++. . + .++++....+.|..++..+++.+..+.. ......++++
T Consensus 274 d~dG~~~~~~~~~~~~~P~giav~--~-~---~ly~td~~~~~V~~~~~~~G~~~~~i~~-~~~~p~gi~v 337 (386)
T 3v65_B 274 NLDGSHRKAVISQGLPHPFAITVF--E-D---SLYWTDWHTKSINSANKFTGKNQEIIRN-KLHFPMDIHT 337 (386)
T ss_dssp CTTSCSCEEEECSSCSSEEEEEEE--T-T---EEEEEETTTTEEEEEETTTCCSCEEEEC-SCSCCCCEEE
T ss_pred eCCCCeeEEEEECCCCCceEEEEE--C-C---EEEEeeCCCCeEEEEECCCCcceEEEcc-CCCCCceEEE
Confidence 99864333332 23466788875 3 4 6777888889999999777776666652 2233444444
|
| >3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L | Back alignment and structure |
|---|
Probab=97.83 E-value=0.023 Score=58.25 Aligned_cols=200 Identities=9% Similarity=-0.048 Sum_probs=122.0
Q ss_pred ccCCCeEEEEeCCCCC---CcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 299 NECDNLIRLKMSKELP---ATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~---~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
....+.|+.++..... ....+..........+++.+.+..| ++-...+.|.+.+++.. .....+...
T Consensus 130 D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~---------~~~~l~~~~ 200 (400)
T 3p5b_L 130 DLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKTLFREN 200 (400)
T ss_dssp ETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTTTC---------SEEEEEECS
T ss_pred ecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCCCC---------ceEEEEeCC
Confidence 3445677777765421 1122222234567788998744444 45456677877776532 111223334
Q ss_pred CccEEEEEEccCCCEEEEEc-C-CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSS-E-DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs-~-Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
......|++.|.+..|..+. . .+.|...++........+.. . -.....|+++++++.|..+.. ..+.|..+|
T Consensus 201 ~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~-~-l~~P~glavd~~~~~lY~aD~----~~~~I~~~d 274 (400)
T 3p5b_L 201 GSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-N-IQWPNGITLDLLSGRLYWVDS----KLHSISSID 274 (400)
T ss_dssp SCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECS-S-CSCEEEEEEETTTTEEEEEET----TTTEEEEEE
T ss_pred CCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEEC-C-CCceEEEEEEeCCCEEEEEEC----CCCEEEEEe
Confidence 45578999999666555444 2 47888888874333233333 2 367899999998888887753 578899999
Q ss_pred eCCcEEEEeec----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 453 INAQLITSLAS----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 453 i~g~~i~~~~~----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
++|.....+.. -....++++. . + .++++....+.|..+|..+++.+..+. .......+++.
T Consensus 275 ~dG~~~~~~~~~~~~l~~P~gl~v~--~-~---~lywtd~~~~~V~~~~~~~G~~~~~i~-~~~~~p~~i~v 339 (400)
T 3p5b_L 275 VNGGNRKTILEDEKRLAHPFSLAVF--E-D---KVFWTDIINEAIFSANRLTGSDVNLLA-ENLLSPEDMVL 339 (400)
T ss_dssp TTSCCCEEEEECSSTTSSEEEEEEE--T-T---EEEEEESSSCSEEEEESSSCCCCEEEE-CSCSCEEEEEE
T ss_pred CCCCccEEEEeCCCCCCCCEEEEEe--C-C---EEEEecCCCCeEEEEEcCCCCceEEEe-cCCCCCceEEE
Confidence 98654443321 2456677775 3 3 577788888899999987887766665 22334555544
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0041 Score=62.03 Aligned_cols=193 Identities=12% Similarity=0.124 Sum_probs=122.9
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC----C---EEEEEcC---CCcEEEEeC
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF----S---VAVSSSE---DGTCLLWDI 404 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~----~---~l~sgs~---Dg~I~iwdl 404 (556)
....++.....+-+.+||+. + +.++.+.. +.++.+..-|+. + ++++... +++|.++++
T Consensus 39 ~~s~ii~t~k~~gL~Vydl~-G---------~~l~~~~~--g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~i 106 (355)
T 3amr_A 39 QNSKLITTNKKSGLVVYSLD-G---------KMLHSYNT--GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAI 106 (355)
T ss_dssp GGCEEEEEETTTEEEEEETT-S---------CEEEEECC--SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEE
T ss_pred CccEEEEEcCCCCEEEEcCC-C---------cEEEEccC--CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEE
Confidence 34456666677889999994 3 33444443 556666666532 2 3333333 578999977
Q ss_pred --CCCeEEEEeCC---C--CCCCCeeEEEE--eCCCC--eEEEEeecCcCCCCeEEEEEeC--------CcEEEEeecCC
Q psy10778 405 --NTIGYIREIPC---V--DPNTPVSHVTM--SETNG--EIASVLQTTKTGGSILRLHTIN--------AQLITSLASEL 465 (556)
Q Consensus 405 --~~~~~v~~l~~---~--h~~~~V~~l~~--sp~~~--~i~s~s~~~~~~d~~I~iwdi~--------g~~i~~~~~~~ 465 (556)
.++ .+..+.. + .....+..+++ ++.++ ++++.. .++.+..|++. +++++++...+
T Consensus 107 Dp~~~-~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~-----k~G~~~q~~l~~~~~g~~~~~lVR~f~lgs 180 (355)
T 3amr_A 107 DGKNG-TLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTG-----KEGEFEQYELKADKNGYISGKKVRAFKMNS 180 (355)
T ss_dssp CTTTC-CEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEEC-----SSSEEEEEEEEECTTSCEEEEEEEEEECSS
T ss_pred CCCCC-ceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEEC-----CCCeEEEEEEEeCCCCcccceEEEEecCCC
Confidence 333 3555521 0 10155667777 77544 344444 77999998872 35678888888
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-----CCeEEEEecCCC-CCCeEEEEE--ecCCC-EEEEEc-CCCc
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-----KLAHLLTLNTNV-ALPVIAVTY--SCDSQ-HLYASN-TEGL 535 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-----~~~~~~~~~~~h-~~~V~~l~~--s~dg~-~l~sgs-~Dg~ 535 (556)
.+..|... ++. ..|..+-++..|..++.. +++.+..+..++ ...+..|++ .++++ +|++++ .+.+
T Consensus 181 q~EgcvvD--d~~---g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s 255 (355)
T 3amr_A 181 QTEGMAAD--DEY---GRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSS 255 (355)
T ss_dssp CEEEEEEE--TTT---TEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTE
T ss_pred CcceEEEc--CCC---CeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCE
Confidence 99999998 666 689999998777777754 356676664322 346888888 45555 555555 5679
Q ss_pred EEEEEcC-CCCCcCee
Q psy10778 536 VIIWESS-SHNRTPKF 550 (556)
Q Consensus 536 V~vwdl~-~~~~~~~~ 550 (556)
..+||.. +.+.+..|
T Consensus 256 ~~Vydr~~~~~~vg~f 271 (355)
T 3amr_A 256 YAIYDRQGKNKYVADF 271 (355)
T ss_dssp EEEEESSTTCCEEEEE
T ss_pred EEEEECCCCCcEEEEE
Confidence 9999996 44444443
|
| >3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B | Back alignment and structure |
|---|
Probab=97.80 E-value=0.0078 Score=59.71 Aligned_cols=191 Identities=8% Similarity=-0.060 Sum_probs=120.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCE-EEEEeCCCcEEEEEeeeccCcccccccCCCeEe-e
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHT-LWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-L 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~-l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~ 372 (556)
+..+....+.|..++..+......+..........+++.+.+.. .++-...+.|.+++.+.. ....+ .
T Consensus 49 lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~----------~~~~l~~ 118 (318)
T 3sov_A 49 IYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGS----------LRKVLFW 118 (318)
T ss_dssp EEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC----------SCEEEEC
T ss_pred EEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCC----------cEEEEEe
Confidence 33334556778778776553222221122334567888875444 455456678888887642 11222 2
Q ss_pred CCCccEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEe-CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREI-PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l-~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
........+++.|.+..|..+. ..+.|...++. |.....+ .. . -.....|+++++++.|..+.. ..+.|.
T Consensus 119 ~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~d-G~~~~~~~~~-~-l~~Pnglavd~~~~~lY~aD~----~~~~I~ 191 (318)
T 3sov_A 119 QELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMD-GSSRFIIINS-E-IYWPNGLTLDYEEQKLYWADA----KLNFIH 191 (318)
T ss_dssp SSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETT-SCSCEEEECS-S-CSCEEEEEEETTTTEEEEEET----TTTEEE
T ss_pred CCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcC-CCCeEEEEEC-C-CCCccEEEEeccCCEEEEEEC----CCCEEE
Confidence 4445678999998765555544 35788888876 3333333 22 2 356789999998888877753 678999
Q ss_pred EEEeCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 450 LHTINAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 450 iwdi~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
.+|++|.....+. .......+++. .+ .++.+-...+.|..++..+++....+.
T Consensus 192 ~~d~dG~~~~~~~~~~~~~P~glav~--~~----~lywtd~~~~~V~~~~~~~G~~~~~i~ 246 (318)
T 3sov_A 192 KSNLDGTNRQAVVKGSLPHPFALTLF--ED----ILYWTDWSTHSILACNKYTGEGLREIH 246 (318)
T ss_dssp EEETTSCSCEEEECSCCSCEEEEEEE--TT----EEEEEETTTTEEEEEETTTCCSCEEEE
T ss_pred EEcCCCCceEEEecCCCCCceEEEEe--CC----EEEEEecCCCeEEEEECCCCCceEEEe
Confidence 9999864333332 23566778876 43 577777788999999988887666655
|
| >3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.0011 Score=68.90 Aligned_cols=159 Identities=7% Similarity=-0.028 Sum_probs=103.5
Q ss_pred cEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC
Q psy10778 377 CVTDLYLCA-GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA 455 (556)
Q Consensus 377 ~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g 455 (556)
....++++| +...|..+...+.|..+|+..+........ ......++++++++.|+++..........+..++.++
T Consensus 138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~~---~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g 214 (430)
T 3tc9_A 138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYSG---LSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRES 214 (430)
T ss_dssp CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEECC---CSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGG
T ss_pred CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEecC---CCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCC
Confidence 456789997 345555555558899999987654444443 5678999999999967666521100122345555554
Q ss_pred cEE--EEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE-EEEc
Q psy10778 456 QLI--TSLASELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL-YASN 531 (556)
Q Consensus 456 ~~i--~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~sgs 531 (556)
... ..+........++++ | +| .++++-..++.|..++...+........+.......++|+|+|++| ++-.
T Consensus 215 ~~~~~~~l~~~~~p~giavd--p~~g---~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~ 289 (430)
T 3tc9_A 215 GFKVITELTKGQNCNGAETH--PING---ELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVV 289 (430)
T ss_dssp TSCSEEEEEECSSCCCEEEC--TTTC---CEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEET
T ss_pred ceeeeeeeccCCCceEEEEe--CCCC---EEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEEC
Confidence 322 233334456778888 7 67 6777777889999999876654233322223457899999999954 4555
Q ss_pred CCCcEEEEEcCC
Q psy10778 532 TEGLVIIWESSS 543 (556)
Q Consensus 532 ~Dg~V~vwdl~~ 543 (556)
..++|..++...
T Consensus 290 ~~~~I~~~~~d~ 301 (430)
T 3tc9_A 290 NQHYILRSDYDW 301 (430)
T ss_dssp TTTEEEEEEEET
T ss_pred CCCEEEEEeCCc
Confidence 678899988754
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=97.72 E-value=0.00066 Score=74.66 Aligned_cols=227 Identities=8% Similarity=-0.052 Sum_probs=125.2
Q ss_pred eEEEEeCCCCCCcce--EcCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 304 LIRLKMSKELPATPV--IRPPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~--~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
.+.+||..+++.... ....+.....++++..+++.+++|+. ++.+.+||..+.... .+..+...... .+
T Consensus 220 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~yd~~t~~W~-------~~~~~~~~R~~-~s 291 (656)
T 1k3i_A 220 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWI-------PGPDMQVARGY-QS 291 (656)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEE-------ECCCCSSCCSS-CE
T ss_pred EEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEEecCcCCcee-------ECCCCCccccc-cc
Confidence 588899988765443 22223333445677889999999984 457899987754211 11111111111 23
Q ss_pred EEEccCCCEEEEEc-CC-----CcEEEEeCCCCeEEEEeCC----CCCCCCeeEEEEeCCCCeEEEEeecCc----CCCC
Q psy10778 381 LYLCAGFSVAVSSS-ED-----GTCLLWDINTIGYIREIPC----VDPNTPVSHVTMSETNGEIASVLQTTK----TGGS 446 (556)
Q Consensus 381 l~~s~~~~~l~sgs-~D-----g~I~iwdl~~~~~v~~l~~----~h~~~~V~~l~~sp~~~~i~s~s~~~~----~~d~ 446 (556)
++..+++++++.|+ .+ ..+.+||..+.+.... .. +.....- ...+..++..++.++.++. ....
T Consensus 292 ~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~-~~~~~~p~~~~~~-~~~~~~~~~iyv~Gg~~g~~~~~~~~~ 369 (656)
T 1k3i_A 292 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSL-PNAKVNPMLTADK-QGLYRSDNHAWLFGWKKGSVFQAGPST 369 (656)
T ss_dssp EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEE-TTSCSGGGCCCCT-TGGGTTTCSCCEEECGGGCEEECCSSS
T ss_pred eEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeC-CCccccccccccc-cceeecCCceEEEECCCCcEEEecCcc
Confidence 45567899999988 44 5799999988764432 11 0000000 0112234444455542110 0245
Q ss_pred eEEEEEeCC-cEEEEee---c-------CCCeEEEEEeeCCCCCcceEEEEEeCCC-----------eEEEEeCCCCeEE
Q psy10778 447 ILRLHTINA-QLITSLA---S-------ELRITSVTFSNAPEGVSQNVIVTGHSDG-----------TIQLWSGYKLAHL 504 (556)
Q Consensus 447 ~I~iwdi~g-~~i~~~~---~-------~~~i~~i~~s~~pdg~~~~~l~tg~~dg-----------~I~iwd~~~~~~~ 504 (556)
.+..||... ....... . ...-.++.+. ..++ ++++.|+.++ .|.+||..+.+..
T Consensus 370 ~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~-~~~~---~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 445 (656)
T 1k3i_A 370 AMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYD-AVKG---KILTFGGSPDYQDSDATTNAHIITLGEPGTSPNT 445 (656)
T ss_dssp EEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEE-TTTT---EEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEE
T ss_pred ceeeeecCCcceeecCCccccccccCCCCCCCceEecc-CCCC---eEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCee
Confidence 678888862 2222211 1 1122344443 1356 7888888543 6888888776654
Q ss_pred EEe-cCCCCCC-eEEEEEecCCCEEEEEcCC-----------CcEEEEEcCCC
Q psy10778 505 LTL-NTNVALP-VIAVTYSCDSQHLYASNTE-----------GLVIIWESSSH 544 (556)
Q Consensus 505 ~~~-~~~h~~~-V~~l~~s~dg~~l~sgs~D-----------g~V~vwdl~~~ 544 (556)
... ..-.... -.+++..+++++++.|+.+ ..+.+||..+.
T Consensus 446 ~~~~~~mp~~R~~~~~~~l~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~ 498 (656)
T 1k3i_A 446 VFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQD 498 (656)
T ss_dssp EECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGT
T ss_pred EEccCCCCCCcccCCeEECCCCCEEEECCcccCcCcCCCCcccceEEEcCCCC
Confidence 433 1111222 2345667899999998865 46889998663
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.026 Score=59.22 Aligned_cols=230 Identities=8% Similarity=-0.019 Sum_probs=136.5
Q ss_pred CCCeEEEEeCCCCCCcceEcCC--CCCceEEEEE-------cCCCCEEEEEeCCC-----c--EEEEEeeeccCcccccc
Q psy10778 301 CDNLIRLKMSKELPATPVIRPP--LGATIATATT-------APDCHTLWLGLTSG-----N--ILVYEYELNASTNKIEF 364 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~--h~~~V~~i~~-------s~dg~~l~tgs~Dg-----~--I~vwd~~~~~~~~~~~~ 364 (556)
..+.|++.|.+++.+..+...+ .......++| +++|+.|+++...+ . |.+.+.... +....
T Consensus 160 ~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~~~~V~~i~r~~~---G~~~~ 236 (496)
T 3kya_A 160 GHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDESPSVYIIKRNAD---GTFDD 236 (496)
T ss_dssp TEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGGEEEEEEEECCTT---SCCST
T ss_pred CCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcccCceEEEEecCCC---Cceee
Confidence 3466888888876665554432 2335889999 99999777766544 2 444442221 11100
Q ss_pred cCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEeCC-------CCeE--------------EEEeCCCCCCCCe
Q psy10778 365 CKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWDIN-------TIGY--------------IREIPCVDPNTPV 422 (556)
Q Consensus 365 ~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwdl~-------~~~~--------------v~~l~~~h~~~~V 422 (556)
......+... ....+++++| ++.++++-..++.|..+|+. ++.. +..+.. ....
T Consensus 237 ~~~~~~v~~~-~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~---~~~p 312 (496)
T 3kya_A 237 RSDIQLIAAY-KQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIAD---PSWE 312 (496)
T ss_dssp TSCEEEEEEE-SCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSS---SSCC
T ss_pred cccceeeccC-CCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCC---CCCc
Confidence 0000122211 2335678899 45667777788899999987 4443 222322 4557
Q ss_pred eEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc--EE---EEeec----C------------CCeE-EEEEeeC-----
Q psy10778 423 SHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ--LI---TSLAS----E------------LRIT-SVTFSNA----- 475 (556)
Q Consensus 423 ~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~--~i---~~~~~----~------------~~i~-~i~~s~~----- 475 (556)
..|+++|+++.+..+.. ..+.|+.++.++. .+ ..+.. . .... .++....
T Consensus 313 ~~ia~~p~G~~lYvaD~----~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~ 388 (496)
T 3kya_A 313 FQIFIHPTGKYAYFGVI----NNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGE 388 (496)
T ss_dssp EEEEECTTSSEEEEEET----TTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSS
T ss_pred eEEEEcCCCCEEEEEeC----CCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEcccccccc
Confidence 89999999996555542 6789999887642 22 12211 0 1233 3343210
Q ss_pred CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC-----------------------CCCCeEEEEEecC-CCEEEEEc
Q psy10778 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-----------------------VALPVIAVTYSCD-SQHLYASN 531 (556)
Q Consensus 476 pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-----------------------h~~~V~~l~~s~d-g~~l~sgs 531 (556)
.+| +++++-..++.|+.++ .++. +.++... .-.....|+++++ |.++++-+
T Consensus 389 ~~g---~lyVaD~~N~rIr~i~-~~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~ 463 (496)
T 3kya_A 389 EEY---DFYFVDRLNFCVRKVT-PEGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQ 463 (496)
T ss_dssp CCE---EEEEEEGGGTEEEEEC-TTCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEET
T ss_pred CCC---eEEEEECCCCEEEEEe-CCCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeC
Confidence 245 6777777889999998 4664 4444210 0134789999997 77777777
Q ss_pred CCCcEEEEEcCCCCC
Q psy10778 532 TEGLVIIWESSSHNR 546 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~ 546 (556)
.+.+|+.++++....
T Consensus 464 ~N~rIrki~~~~~~~ 478 (496)
T 3kya_A 464 VGHTIRTISMEQEEN 478 (496)
T ss_dssp TTTEEEEEEECCCC-
T ss_pred CCCEEEEEECCCCcc
Confidence 788999999977443
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.69 E-value=0.0022 Score=71.72 Aligned_cols=196 Identities=7% Similarity=0.037 Sum_probs=112.9
Q ss_pred ceEEEEEc-CCCCEEEEEeC-CC----cEEEEEeeec-cCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--
Q psy10778 326 TIATATTA-PDCHTLWLGLT-SG----NILVYEYELN-ASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-- 396 (556)
Q Consensus 326 ~V~~i~~s-~dg~~l~tgs~-Dg----~I~vwd~~~~-~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-- 396 (556)
.+...+|| |||++||.+.. +| +|+++|+.++ ... ...+.. ....++|+||++.|+..+.|
T Consensus 175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l--------~~~~~~---~~~~~~WspDg~~l~y~~~d~~ 243 (751)
T 2xe4_A 175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTI--------ADKVSG---TNGEIVWGPDHTSLFYVTKDET 243 (751)
T ss_dssp EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCC--------CCCEEE---ECSCCEECSSTTEEEEEEECTT
T ss_pred EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeC--------CccccC---ceeeEEEecCCCEEEEEEECCC
Confidence 67889999 99998886643 33 4888888764 210 011111 13468899999877766654
Q ss_pred ---CcEEEEeCCCCeE--EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC---cE-EEEe-e-cCC
Q psy10778 397 ---GTCLLWDINTIGY--IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA---QL-ITSL-A-SEL 465 (556)
Q Consensus 397 ---g~I~iwdl~~~~~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g---~~-i~~~-~-~~~ 465 (556)
..|.++++.+++. ...+.... ......+.|+|||++|+..+... ....|+++|+.+ +. +..+ . ...
T Consensus 244 ~~~~~v~~~~lgt~~~~~~lv~~~~~-~~~~~~~~~SpDg~~l~~~~~~~--~~~~l~~~d~~~~~~~~~~~~l~~~~~~ 320 (751)
T 2xe4_A 244 LRENKVWRHVMGKLQSEDVCLYEEHN-PLFSAFMYKAADTNTLCIGSQSP--ETAEVHLLDLRKGNAHNTLEIVRPREKG 320 (751)
T ss_dssp CCEEEEEEEETTSCGGGCEEEEECCC-TTCEEEEEECTTSSEEEEEEECS--SCEEEEEEESSSCTTCCCEEESSCCCTT
T ss_pred CCCCEEEEEECCCCchhcEEEEecCC-CceEEEEEECCCCCEEEEEecCC--CCceEEEEECCCCCCCceeEEeecCCCC
Confidence 2588888877532 22332202 34567889999999998776422 356788889873 22 1222 2 233
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeCC----CeEEEEeCCCC-eEEE-EecCCCCCCeEEEEEecCCCEEEEEcCCCc--EE
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHSD----GTIQLWSGYKL-AHLL-TLNTNVALPVIAVTYSCDSQHLYASNTEGL--VI 537 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~d----g~I~iwd~~~~-~~~~-~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~--V~ 537 (556)
...++.|+ ..+ .+++....+ ..|..+++.+. +... .+.......+..+.+. .+.++++...+|. |.
T Consensus 321 ~~~s~~~~--~g~---~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~~-~~~lv~~~~~~g~~~l~ 394 (751)
T 2xe4_A 321 VRYDVQMH--GTS---HLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAVR-SNYLVVAGRRAGLTRIW 394 (751)
T ss_dssp CCEEEEEE--TTT---EEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEEC-SSEEEEEEEETTEEEEE
T ss_pred ceEEEeee--eCC---EEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEEE-CCEEEEEEEeCCEEEEE
Confidence 44555554 333 455555443 36777777642 2222 2321112244555554 2345566677775 45
Q ss_pred EEEc
Q psy10778 538 IWES 541 (556)
Q Consensus 538 vwdl 541 (556)
++++
T Consensus 395 ~~dl 398 (751)
T 2xe4_A 395 TMMA 398 (751)
T ss_dssp EEEC
T ss_pred EEec
Confidence 5564
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.063 Score=59.95 Aligned_cols=230 Identities=9% Similarity=-0.056 Sum_probs=134.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-------------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-------------PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNK 361 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-------------~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~ 361 (556)
.+-.|+..+-|.+++..++....... .-....|.++...++|. |..|+.++-|..++.......
T Consensus 270 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~f~~~~~~~~~~~l~~~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~-- 346 (781)
T 3v9f_A 270 KLWIATELNGIMILDLQQNQFLLPEQIRFEFIREGDNNYSLSNASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFH-- 346 (781)
T ss_dssp EEEEEESSSCEEEEETTCC---------CEEECBCSSTTSBSSSCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCE--
T ss_pred CEEEEeCCCCeEEECCCCCeeeeeeccccccccCCCCCCCCCCCeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcce--
Confidence 44445554567777776654332211 01345799999888875 667777777888876543100
Q ss_pred ccccCCC--eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe---CCCCCCCCeeEEEEeCCCCeEEE
Q psy10778 362 IEFCKPP--TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI---PCVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 362 ~~~~~~~--~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l---~~~h~~~~V~~l~~sp~~~~i~s 436 (556)
....... ..-......|.++...+++.+ ..|+.++-+..+|..+++..... .. . ...|.++...+++...+
T Consensus 347 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~l-Wigt~~~Gl~~~~~~~~~~~~~~~~~~~-~-~~~v~~i~~d~~g~lWi- 422 (781)
T 3v9f_A 347 TWSYSPTQMNESSLSNKVVSSVCDDGQGKL-WIGTDGGGINVFENGKRVAIYNKENREL-L-SNSVLCSLKDSEGNLWF- 422 (781)
T ss_dssp EEC----CCCSSCCSSSCEEEEEECTTSCE-EEEEBSSCEEEEETTEEEEECC-----C-C-CSBEEEEEECTTSCEEE-
T ss_pred eeccCccccccCCCCCcceEEEEEcCCCCE-EEEeCCCcEEEEECCCCeEEEccCCCCC-C-CcceEEEEECCCCCEEE-
Confidence 0000000 000112356999998888764 45565566888998754332111 11 2 46788998887765444
Q ss_pred EeecCcCCCCeEEEEEeCCcEEEEee----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC--
Q psy10778 437 VLQTTKTGGSILRLHTINAQLITSLA----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN-- 510 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~g~~i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~-- 510 (556)
++ .++-|..++.+......+. ....|.++... ++| + |..|+. +.|..+|..+++........
T Consensus 423 gt-----~~~Gl~~~~~~~~~~~~~~~~~~~~~~v~~i~~d--~~g---~-lwigt~-~Gl~~~~~~~~~~~~~~~~~~~ 490 (781)
T 3v9f_A 423 GT-----YLGNISYYNTRLKKFQIIELEKNELLDVRVFYED--KNK---K-IWIGTH-AGVFVIDLASKKVIHHYDTSNS 490 (781)
T ss_dssp EE-----TTEEEEEECSSSCEEEECCSTTTCCCCEEEEEEC--TTS---E-EEEEET-TEEEEEESSSSSCCEEECTTTS
T ss_pred Ee-----ccCCEEEEcCCCCcEEEeccCCCCCCeEEEEEEC--CCC---C-EEEEEC-CceEEEeCCCCeEEecccCccc
Confidence 55 5667888888744444443 23578888877 777 4 555665 56888998766543322211
Q ss_pred --CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 511 --VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 511 --h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
....|.++...++|++.+ |+.++-|..|+..++
T Consensus 491 ~~~~~~i~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~ 525 (781)
T 3v9f_A 491 QLLENFVRSIAQDSEGRFWI-GTFGGGVGIYTPDMQ 525 (781)
T ss_dssp SCSCSCEEEEEECTTCCEEE-EESSSCEEEECTTCC
T ss_pred ccccceeEEEEEcCCCCEEE-EEcCCCEEEEeCCCC
Confidence 146799999999887665 444444777877553
|
| >3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=97.62 E-value=0.027 Score=63.01 Aligned_cols=225 Identities=13% Similarity=0.040 Sum_probs=136.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc--------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR--------PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~--------~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
-+=.|+.++-|..++..+........ ......|.+++..++|. |..|+.++-|.+|+..+... . .
T Consensus 325 ~lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~----~--~ 397 (781)
T 3v9f_A 325 NIWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVA----I--Y 397 (781)
T ss_dssp CEEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEE----E--C
T ss_pred CEEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeE----E--E
Confidence 34445556777777776554332211 01235699999888765 56677667788888654310 0 0
Q ss_pred CCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC--CCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 367 PPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC--VDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 367 ~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~--~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
....-......|.++...+++.+.+ |+.++-+..+|..+++.. .+.. .. ...|.++...+++. |..++ .
T Consensus 398 ~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~-~~~v~~i~~d~~g~-lwigt-----~ 468 (781)
T 3v9f_A 398 NKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNE-LLDVRVFYEDKNKK-IWIGT-----H 468 (781)
T ss_dssp C-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTC-CCCEEEEEECTTSE-EEEEE-----T
T ss_pred ccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCC-CCeEEEEEECCCCC-EEEEE-----C
Confidence 0000122346799999888887555 666666889998876543 3321 02 46789998887765 55555 4
Q ss_pred CCeEEEEEeCCcEEEEee-c------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC---CCCCC
Q psy10778 445 GSILRLHTINAQLITSLA-S------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---NVALP 514 (556)
Q Consensus 445 d~~I~iwdi~g~~i~~~~-~------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---~h~~~ 514 (556)
+-|..+|........+. . ...|.++... ++| + |..|+.++.|..+|..+++. ..+.. -....
T Consensus 469 -~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d--~~g---~-lWigt~~~Gl~~~~~~~~~~-~~~~~~~~l~~~~ 540 (781)
T 3v9f_A 469 -AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQD--SEG---R-FWIGTFGGGVGIYTPDMQLV-RKFNQYEGFCSNT 540 (781)
T ss_dssp -TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEEC--TTC---C-EEEEESSSCEEEECTTCCEE-EEECTTTTCSCSC
T ss_pred -CceEEEeCCCCeEEecccCcccccccceeEEEEEc--CCC---C-EEEEEcCCCEEEEeCCCCeE-EEccCCCCCCCCe
Confidence 56888888632222221 1 3578888877 777 4 55566544577788766543 33331 12457
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
|.++...++|.+.++. .+|.|..||..++
T Consensus 541 i~~i~~d~~g~lWi~T-~~Glv~~~d~~~~ 569 (781)
T 3v9f_A 541 INQIYRSSKGQMWLAT-GEGLVCFPSARNF 569 (781)
T ss_dssp EEEEEECTTSCEEEEE-TTEEEEESCTTTC
T ss_pred eEEEEECCCCCEEEEE-CCCceEEECCCCC
Confidence 8999999998866654 4776588887664
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00026 Score=78.48 Aligned_cols=228 Identities=9% Similarity=-0.048 Sum_probs=133.3
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
..+.|+..++.+.....++. ....+..++|.+.+..|+.+. ..+.|+.+++....... .....+........
T Consensus 384 ~~~~I~~id~~~~~~~~~~~--~~~~p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~-----~~~~~i~~~~~~P~ 456 (699)
T 1n7d_A 384 NRHEVRKMTLDRSEYTSLIP--NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----SYDTVISRDIQAPD 456 (699)
T ss_dssp CTTC-CEECTTSCCEECCSC--CCTTCCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-C-----CCCCBCCSCC--CC
T ss_pred CccceEEEeCCCCcceeeec--cCcceEEEccccccCeEEEEecCCCeEEEEecCCCCCCc-----ceEEEEeCCCCCcc
Confidence 34677888877654433332 234567889998766666654 55788888876410000 11111111222345
Q ss_pred EEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 380 DLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 380 ~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
.|++.+. +.+.++-...+.|.+.++........+.. . ......|+++|.++.|+.+... ..+.|..++++|...
T Consensus 457 glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~-~-~~~P~giavDp~~g~ly~td~~---~~~~I~~~~~dG~~~ 531 (699)
T 1n7d_A 457 GLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-Q-GSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGVDI 531 (699)
T ss_dssp CEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCC-S-SCCCCCEECCSSSSCCEECCCS---SSCCEEBCCSSSCCC
T ss_pred eEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeC-C-CCCcceEEEccCCCcEEEcccC---CCCeEEEEeCCCCCe
Confidence 6788754 45555656678999999875433333332 2 3567889999987776665410 236788888876544
Q ss_pred EEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 459 TSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 459 ~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
..+. .-...+.|+++ +++. +++++-+..+.|..+++.... .+.+.. .......+|++..+ .++++....+
T Consensus 532 ~~l~~~~l~~PnGlavd--~~~~--~LY~aD~~~~~I~~~d~dG~~-~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~ 605 (699)
T 1n7d_A 532 YSLVTENIQWPNGITLD--LLSG--RLYWVDSKLHSISSIDVNGGN-RKTILEDEKRLAHPFSLAVFED-KVFWTDIINE 605 (699)
T ss_dssp CEESCSSCSSCCCEEEC--TTTC--CEEEEETTTTEEEEECSSSSC-CEEECCCSSSCSSCCCCEEETT-EEEEECSTTT
T ss_pred eEEEeCCCCCccEEEEe--ccCC--EEEEEecCCCeEEEEccCCCc-eEEEEecCCcCCCceEeEEECC-EEEEEeCCCC
Confidence 3332 23456789999 6542 566666677899999985433 233321 11233456666654 4555555678
Q ss_pred cEEEEEcCCCCC
Q psy10778 535 LVIIWESSSHNR 546 (556)
Q Consensus 535 ~V~vwdl~~~~~ 546 (556)
.|..++..+++.
T Consensus 606 ~V~~~d~~~G~~ 617 (699)
T 1n7d_A 606 AIFSANRLTGSD 617 (699)
T ss_dssp CEEEEETTTEEE
T ss_pred eEEEEEccCCCc
Confidence 999999766543
|
| >3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A | Back alignment and structure |
|---|
Probab=97.60 E-value=0.014 Score=58.09 Aligned_cols=187 Identities=9% Similarity=0.081 Sum_probs=123.6
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC----CCE--EEEE-e-C--CCcEEEEEeeeccCcccccccCCCe
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD----CHT--LWLG-L-T--SGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d----g~~--l~tg-s-~--Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
...+-+.++|+ +++.+..+.. +.++.+..-|+ |+. ++.+ . . +++|++|+++... ..+.
T Consensus 47 ~k~~gL~Vydl-~G~~l~~~~~---g~~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~--------~~l~ 114 (355)
T 3amr_A 47 NKKSGLVVYSL-DGKMLHSYNT---GKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKN--------GTLQ 114 (355)
T ss_dssp ETTTEEEEEET-TSCEEEEECC---SCEEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTT--------CCEE
T ss_pred cCCCCEEEEcC-CCcEEEEccC---CCcccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCC--------Ccee
Confidence 34578999999 6777766642 45677666552 222 3333 3 3 5789999885321 1112
Q ss_pred Eee-------CCCccEEEEEE--ccC-CC-EEEEEcCCCcEEEEeC-------CCCeEEEEeCCCCCCCCeeEEEEeCCC
Q psy10778 370 ILL-------GHSACVTDLYL--CAG-FS-VAVSSSEDGTCLLWDI-------NTIGYIREIPCVDPNTPVSHVTMSETN 431 (556)
Q Consensus 370 ~l~-------~h~~~V~~l~~--s~~-~~-~l~sgs~Dg~I~iwdl-------~~~~~v~~l~~~h~~~~V~~l~~sp~~ 431 (556)
.+. .-...+..++. ++. +. +++...++|.+..|++ .+.+.++++.. .+.+..++..+..
T Consensus 115 ~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~l---gsq~EgcvvDd~~ 191 (355)
T 3amr_A 115 SMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKM---NSQTEGMAADDEY 191 (355)
T ss_dssp ECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEEC---SSCEEEEEEETTT
T ss_pred eccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecC---CCCcceEEEcCCC
Confidence 221 11145566666 664 43 6777888999999988 23477899987 6789999999999
Q ss_pred CeEEEEeecCcCCCCeEEEEEeC------CcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCC-C
Q psy10778 432 GEIASVLQTTKTGGSILRLHTIN------AQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGY-K 500 (556)
Q Consensus 432 ~~i~s~s~~~~~~d~~I~iwdi~------g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~-~ 500 (556)
+.|..+- ++.-|..++.+ ++++..... ...+..|++.+.+++. .+|++++ .++++.+||.. +
T Consensus 192 g~Lyv~e-----Ed~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~--gyLivSsQG~~s~~Vydr~~~ 264 (355)
T 3amr_A 192 GRLYIAE-----EDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGK--GYLMASSQGNSSYAIYDRQGK 264 (355)
T ss_dssp TEEEEEE-----TTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGC--EEEEEEEGGGTEEEEEESSTT
T ss_pred CeEEEec-----ccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCC--EEEEEEcCCCCEEEEEECCCC
Confidence 9999987 67666666654 345555432 3578889886445552 2566555 67799999996 6
Q ss_pred CeEEEEec
Q psy10778 501 LAHLLTLN 508 (556)
Q Consensus 501 ~~~~~~~~ 508 (556)
.+.+..+.
T Consensus 265 ~~~vg~f~ 272 (355)
T 3amr_A 265 NKYVADFR 272 (355)
T ss_dssp CCEEEEEE
T ss_pred CcEEEEEE
Confidence 77777774
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=97.58 E-value=0.018 Score=62.61 Aligned_cols=227 Identities=7% Similarity=-0.080 Sum_probs=133.7
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
....|+..++................+..+++++.+..|+.+. ..+.|..++++... .....+........
T Consensus 16 ~~~~I~~i~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~--------~~~~v~~~~~~~P~ 87 (619)
T 3s94_A 16 NRRDLRLVDATNGKENATIVVGGLEDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTE--------SVQNVVVSGLLSPD 87 (619)
T ss_dssp CSSBEEEECCC---------CBCCSCEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCEE
T ss_pred ccccEEEEeCCCCcceEEEEEcCCCceEEEEEEeCCCEEEEEECCCCeEEEEEccCCC--------ceEEEEeCCCCCcC
Confidence 3567788777654211222223445678999998767666654 45677777776430 01122333335688
Q ss_pred EEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeC-CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcE
Q psy10778 380 DLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIP-CVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQL 457 (556)
Q Consensus 380 ~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~-~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~ 457 (556)
.+++.+.+. +.++-...+.|.+.++... ..+.+. . . -.....|+++|.++.|..+... ..+.|...+++|..
T Consensus 88 GlAvD~~~~~ly~~d~~~~~I~v~~~dG~-~~~~l~~~-~-l~~P~~Iavdp~~g~ly~tD~g---~~~~I~r~~~dG~~ 161 (619)
T 3s94_A 88 GLACDWLGEKLYWTDSETNRIEVSNLDGS-LRKVLFWQ-E-LDQPRAIALDPSSGFMYWTDWG---EVPKIERAGMDGSS 161 (619)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECS-S-CSCCCCEEEETTTTEEEEEECS---SSCEEEEEETTSCS
T ss_pred eEEEEecCCEEEEEeCCCCEEEEEECCCC-CEEEEEeC-C-CCCCceEEEecCCCeEEEeccC---CCCEEEEEECCCCc
Confidence 999998555 5556667889999998743 333332 3 2 4567899999987777766410 24677777888754
Q ss_pred EEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCc
Q psy10778 458 ITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGL 535 (556)
Q Consensus 458 i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~ 535 (556)
...+. .-.....++++ +++. ++.++-...+.|...|+.. .....+..+......+|++..+ .+.++-...+.
T Consensus 162 ~~~l~~~~~~~P~Glald--~~~~--~LY~aD~~~~~I~~~~~dG-~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~ 235 (619)
T 3s94_A 162 RFIIINSEIYWPNGLTLD--YEEQ--KLYWADAKLNFIHKSNLDG-TNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHS 235 (619)
T ss_dssp CEEEECSSCSSEEEEEEE--TTTT--EEEEEETTTCCEEEESSSC-CEEC---------CCCEEESSS-EEEEECTTTCS
T ss_pred eEEEEeCCCCCCcEEEEE--ccCC--EEEEEeCCCCeEEEecCCC-CccEEEEeCCCCCceEEEEeCC-EEEEecCCCCE
Confidence 44442 33567899999 6541 5666666778899999854 3333332111223356677655 44445556788
Q ss_pred EEEEEcCCCCCc
Q psy10778 536 VIIWESSSHNRT 547 (556)
Q Consensus 536 V~vwdl~~~~~~ 547 (556)
|...|..+++..
T Consensus 236 V~~~d~~tg~~~ 247 (619)
T 3s94_A 236 ILACNKYTGEGL 247 (619)
T ss_dssp EEEEESSSCCCC
T ss_pred EEEEECCCCccc
Confidence 999998776544
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.50 E-value=0.0059 Score=60.34 Aligned_cols=198 Identities=9% Similarity=0.043 Sum_probs=123.3
Q ss_pred EEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeC----C--CccEEEEEE---ccCCCEEEEEc---
Q psy10778 328 ATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLG----H--SACVTDLYL---CAGFSVAVSSS--- 394 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~----h--~~~V~~l~~---s~~~~~l~sgs--- 394 (556)
-+++|.+....+..++ ..|+|..|+...+. .. .+ .+.+ . ...+.+|.| .++++++++..
T Consensus 16 E~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~----~~---~~-~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~ 87 (334)
T 2p9w_A 16 EDTIYDRTRQVFYQSNLYKGRIEVYNPKTQS----HF---NV-VIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAK 87 (334)
T ss_dssp SCEEEETTTTEEEEEETTTTEEEEECTTTCC----EE---EE-CCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETT
T ss_pred cCccCcCCCCEEEEEeccCCEEEEEcCCCCe----EE---EE-ecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccc
Confidence 4688988666666666 78999999875331 00 00 1111 1 124579999 68887777543
Q ss_pred ----------CCCcEEEEeCC---CCeEEEEeCCC-C----------CCCCeeEEEEeCCCCeEEEEeecCcCCC-CeEE
Q psy10778 395 ----------EDGTCLLWDIN---TIGYIREIPCV-D----------PNTPVSHVTMSETNGEIASVLQTTKTGG-SILR 449 (556)
Q Consensus 395 ----------~Dg~I~iwdl~---~~~~v~~l~~~-h----------~~~~V~~l~~sp~~~~i~s~s~~~~~~d-~~I~ 449 (556)
.+..+..+|+. +++.+...... . .......++..++|+..++.+ .. +.|.
T Consensus 88 af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s-----~~~~~I~ 162 (334)
T 2p9w_A 88 SFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFA-----LGMPAIA 162 (334)
T ss_dssp TTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEE-----ESSCEEE
T ss_pred cccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCC-----CCCCeEE
Confidence 26779999999 77766544320 0 013478999999999999888 66 7888
Q ss_pred EEEeCCcEEEEeec-------CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE--EEEec-CC--CCCCeEE
Q psy10778 450 LHTINAQLITSLAS-------ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH--LLTLN-TN--VALPVIA 517 (556)
Q Consensus 450 iwdi~g~~i~~~~~-------~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~--~~~~~-~~--h~~~V~~ 517 (556)
.++.+|+.+..+.. ....+.|++. |+| +.|++....|.|..+|+..... +..-. .. .-.....
T Consensus 163 rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~--pdg---~~Liv~~~~g~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dg 237 (334)
T 2p9w_A 163 RVSADGKTVSTFAWESGNGGQRPGYSGITFD--PHS---NKLIAFGGPRALTAFDVSKPYAWPEPVKINGDFGTLSGTEK 237 (334)
T ss_dssp EECTTSCCEEEEEECCCCSSSCCSCSEEEEE--TTT---TEEEEESSSSSEEEEECSSSSCCCEECEESSCCCCCTTEEE
T ss_pred EEeCCCCEEeeeeecCCCcccccCcceEEEe--CCC---CEEEEEcCCCeEEEEcCCCCcceeecccccCCcccccCccc
Confidence 88888774443321 1236799999 899 7888777799999999874332 21110 00 1123444
Q ss_pred E-EEecCCCE-EEEEcCCCcEEEEEcCC
Q psy10778 518 V-TYSCDSQH-LYASNTEGLVIIWESSS 543 (556)
Q Consensus 518 l-~~s~dg~~-l~sgs~Dg~V~vwdl~~ 543 (556)
| ..-.+|+. |++....+.+.+.+...
T Consensus 238 ilp~~~~G~vllV~~~~~~~~~l~S~Dg 265 (334)
T 2p9w_A 238 IVTVPVGNESVLVGARAPYAISFRSWDN 265 (334)
T ss_dssp EEEEEETTEEEEEEEETTEEEEEECSST
T ss_pred ccccccCCEEEEEEcCCCCEEEEECCCC
Confidence 3 33457777 44444555555544433
|
| >3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.40 E-value=0.1 Score=58.34 Aligned_cols=190 Identities=8% Similarity=-0.077 Sum_probs=117.1
Q ss_pred EEeccCCCeEEEEeCCCC----CCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 296 ICWNECDNLIRLKMSKEL----PATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~----~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+.+....+.|+.+++... ....++. ........+++.+.++.|+.+ ...+.|.+.+++.. ...+
T Consensus 439 Y~sD~~~~~I~~~~l~g~~~~~~~~~vi~-~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~----------~~~~ 507 (791)
T 3m0c_C 439 YWSDLSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------KRKT 507 (791)
T ss_dssp EEEETTTTEEEEEEC--------CEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS----------SEEE
T ss_pred EEeeccceeEEEEeccCCCCCcceeEEEe-cCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCCC----------eEEE
Confidence 333344566666666542 1122222 234556788888776555544 56678888887643 1122
Q ss_pred -eeCCCccEEEEEEccCCCEEEEEc-CC-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe
Q psy10778 371 -LLGHSACVTDLYLCAGFSVAVSSS-ED-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 371 -l~~h~~~V~~l~~s~~~~~l~sgs-~D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~ 447 (556)
+.........|++.|.+..|+.+. .. +.|.+.++........+.. . -.....|++++.++.|+.+.. ..+.
T Consensus 508 l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~-~-l~~P~GLavD~~~~~LYwaD~----~~~~ 581 (791)
T 3m0c_C 508 LFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTE-N-IQWPNGITLDLLSGRLYWVDS----KLHS 581 (791)
T ss_dssp EEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECS-S-CSCEEEEEEETTTTEEEEEET----TTTE
T ss_pred EEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeC-C-CCCceEEEEecCCCeEEEEeC----CCCc
Confidence 233445688999999766555544 23 6788888874333333333 2 367899999988888877753 5678
Q ss_pred EEEEEeCCcEEEEee-c---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 448 LRLHTINAQLITSLA-S---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 448 I~iwdi~g~~i~~~~-~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
|..++++|.....+. . -....+|++. . + +++++-...+.|...+..+++.+..+.
T Consensus 582 I~~~d~dG~~~~~v~~~~~~l~~P~glav~--~-~---~lYwtD~~~~~I~~~dk~tG~~~~~l~ 640 (791)
T 3m0c_C 582 ISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E-D---KVFWTDIINEAIFSANRLTGSDVNLLA 640 (791)
T ss_dssp EEEEETTSCSCEEEEECTTTTSSEEEEEEE--T-T---EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred EEEEecCCCceEEEecCCCccCCCCEEEEe--C-C---EEEEEECCCCEEEEEeCCCCcceEEee
Confidence 999999865444432 1 2345677765 3 3 577777778899988887776655554
|
| >2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major} | Back alignment and structure |
|---|
Probab=97.35 E-value=0.0045 Score=69.16 Aligned_cols=224 Identities=9% Similarity=0.021 Sum_probs=117.7
Q ss_pred CeEEEEeCCCC-CCcce-EcCCCCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcccccccCCCeEee-CC
Q psy10778 303 NLIRLKMSKEL-PATPV-IRPPLGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKIEFCKPPTILL-GH 374 (556)
Q Consensus 303 g~I~lw~~~~~-~~~~~-~~~~h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~l~-~h 374 (556)
..|+++++.++ +.+.. +. .....++|+|||+.|+....|. .|.++++.++.. +....+. ..
T Consensus 201 ~~l~v~dl~~g~~~l~~~~~----~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~-------~~~lv~~~~~ 269 (751)
T 2xe4_A 201 YTIEFKRISDPSQTIADKVS----GTNGEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQS-------EDVCLYEEHN 269 (751)
T ss_dssp EEEEEEETTCTTCCCCCCEE----EECSCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGG-------GCEEEEECCC
T ss_pred EEEEEEECCCCCEeCCcccc----CceeeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCch-------hcEEEEecCC
Confidence 46999999987 53221 11 1134678999999888877652 455555543210 1112222 22
Q ss_pred CccEEEEEEccCCCEEEEEcC---CCcEEEEeCCCCe-EE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSE---DGTCLLWDINTIG-YI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~---Dg~I~iwdl~~~~-~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
......+.|+|||+.|+..+. ...|.++|+.++. .. +.+.... ......+.|+. ++.|+..+.........|
T Consensus 270 ~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~-~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L 347 (751)
T 2xe4_A 270 PLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPRE-KGVRYDVQMHG-TSHLVILTNEGGAVNHKL 347 (751)
T ss_dssp TTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCC-TTCCEEEEEET-TTEEEEEECTTTCTTCEE
T ss_pred CceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCC-CCceEEEeeee-CCEEEEEeCCCCCCCcEE
Confidence 344678899999997776542 3467888988752 22 4443302 34445555443 666666553210123467
Q ss_pred EEEEeCC--cEEE-EeecCC--CeEEEEEeeCCCCCcceEEEEEeCCCeE--EEEeC-------CCCeEEEEecCCCCCC
Q psy10778 449 RLHTINA--QLIT-SLASEL--RITSVTFSNAPEGVSQNVIVTGHSDGTI--QLWSG-------YKLAHLLTLNTNVALP 514 (556)
Q Consensus 449 ~iwdi~g--~~i~-~~~~~~--~i~~i~~s~~pdg~~~~~l~tg~~dg~I--~iwd~-------~~~~~~~~~~~~h~~~ 514 (556)
..+++.+ .... .+.+.. .+..+.+. . + .++++...+|.. .++++ ..++.+..+.......
T Consensus 348 ~~~d~~~~~~~~~~li~~~~~~~l~~~~~~--~-~---~lv~~~~~~g~~~l~~~dl~~~~~~~~~g~~~~~l~l~~~~~ 421 (751)
T 2xe4_A 348 LIAPRGQPSDWSHVLVDHSEDVFMESIAVR--S-N---YLVVAGRRAGLTRIWTMMADSQDGVFKAGTGLREVVMEEPIF 421 (751)
T ss_dssp EEEETTSTTCCCCEEECCCSSEEEEEEEEC--S-S---EEEEEEEETTEEEEEEEECCTTTSCCCTTTCCEECCCCCSSC
T ss_pred EEEcCCCcccceeeEECCCCCcEEEEEEEE--C-C---EEEEEEEeCCEEEEEEEecccccccccCCccceEECCCCcee
Confidence 7777762 2222 233333 34455554 2 3 577778888864 45564 2333144443211122
Q ss_pred eEEEEE----ecCCC-EEEEEcCC---CcEEEEEcCCCC
Q psy10778 515 VIAVTY----SCDSQ-HLYASNTE---GLVIIWESSSHN 545 (556)
Q Consensus 515 V~~l~~----s~dg~-~l~sgs~D---g~V~vwdl~~~~ 545 (556)
+..+.+ ++++. ++++.+.. +.+..+|+.+++
T Consensus 422 ~~~~~~~~~~~~~~~~l~~~~ss~~~P~~~~~~d~~~~~ 460 (751)
T 2xe4_A 422 TVHLVESQMLEYEEPTFRMEYSSLATPNTWFDVSPQDHS 460 (751)
T ss_dssp EEEECGGGCCCTTCSCEEEEEEETTEEEEEEEECTTTCC
T ss_pred EEEeccCcccCCCCCEEEEEEeCCCCCCEEEEEECCCCc
Confidence 334432 34554 44444332 467777776643
|
| >2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.021 Score=56.39 Aligned_cols=159 Identities=14% Similarity=0.078 Sum_probs=106.3
Q ss_pred cEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCC------CCCCeeEEEE---eCCCCeEEEEeecC-----
Q psy10778 377 CVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGYIREIPCVD------PNTPVSHVTM---SETNGEIASVLQTT----- 441 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h------~~~~V~~l~~---sp~~~~i~s~s~~~----- 441 (556)
---+++|.+....+..++ ..|+|..||...+........ . +...+..|.+ .|+++.+++.. .+
T Consensus 14 yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~-~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~-~~~af~~ 91 (334)
T 2p9w_A 14 TPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVID-GASSNGDGEQQMSGLSLLTHDNSKRLFAVMK-NAKSFNF 91 (334)
T ss_dssp CCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCT-TTCCSSCCSEEEEEEEESSSSSCCEEEEEEE-ETTTTCT
T ss_pred CCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecC-CccccCCCcceeeEEEEeccCCCCcEEEEEc-ccccccc
Confidence 344788987555555544 799999999986644433211 1 0114679999 68866665432 11
Q ss_pred ----cCCCCeEEEEEeC----CcEEEEeecC--------------CCeEEEEEeeCCCCCcceEEEEEeCC-CeEEEEeC
Q psy10778 442 ----KTGGSILRLHTIN----AQLITSLASE--------------LRITSVTFSNAPEGVSQNVIVTGHSD-GTIQLWSG 498 (556)
Q Consensus 442 ----~~~d~~I~iwdi~----g~~i~~~~~~--------------~~i~~i~~s~~pdg~~~~~l~tg~~d-g~I~iwd~ 498 (556)
.+.+..|..||+. ++.+...... .....++.. ++| +..++++.. +.|...+.
T Consensus 92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD--~~G---naYVt~s~~~~~I~rV~p 166 (334)
T 2p9w_A 92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQD--RDG---NSYVAFALGMPAIARVSA 166 (334)
T ss_dssp TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEEC--TTS---CEEEEEEESSCEEEEECT
T ss_pred cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEEC--CCC---CEEEeCCCCCCeEEEEeC
Confidence 0125789999988 6666555321 247788888 899 899999988 88888886
Q ss_pred CCCeEEEEecC-----CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 499 YKLAHLLTLNT-----NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 499 ~~~~~~~~~~~-----~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
. ++.+..+.. ......+.|+++|+|..|++...+|.|..+|+.+
T Consensus 167 d-G~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~ 215 (334)
T 2p9w_A 167 D-GKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK 215 (334)
T ss_dssp T-SCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred C-CCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence 4 333332211 1123467999999999999888899999999885
|
| >4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A* | Back alignment and structure |
|---|
Probab=97.21 E-value=0.24 Score=53.82 Aligned_cols=189 Identities=7% Similarity=-0.097 Sum_probs=118.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEe-e
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTIL-L 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~ 372 (556)
+..+...++.|+.++.........+. ........+++...+..|+.+ ...+.|.+.+++.. ....+ .
T Consensus 51 lywtD~~~~~I~r~~~~g~~~~~v~~-~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~----------~~~~l~~ 119 (628)
T 4a0p_A 51 IYWTDISLKTISRAFMNGSALEHVVE-FGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQ----------HRQVLVW 119 (628)
T ss_dssp EEEEETTTTEEEEEETTSCSCEEEEC-SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTST----------TCEEEEC
T ss_pred EEEEECCCCeEEEEECCCCCcEEEEe-CCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCC----------cEEEEEe
Confidence 33444566788878776544433333 222456688888765555444 55677888776543 11222 2
Q ss_pred CCCccEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
..-....+|++.|....|..+. ..+.|...++........+.. -.....|+++++++.|..+.. ..+.|..
T Consensus 120 ~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~---~~~P~GlalD~~~~~LY~aD~----~~~~I~~ 192 (628)
T 4a0p_A 120 KDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPN---VGRANGLTIDYAKRRLYWTDL----DTNLIES 192 (628)
T ss_dssp SSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECS---CSSEEEEEEETTTTEEEEEET----TTTEEEE
T ss_pred CCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECC---CCCcceEEEccccCEEEEEEC----CCCEEEE
Confidence 3445678999998655555444 256777778764333223333 567899999998888877753 6788999
Q ss_pred EEeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 451 HTINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 451 wdi~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
+|++|.....+ ..-.....+++. . + .++++-...+.|...|..+++....+
T Consensus 193 ~d~dG~~~~v~~~~l~~P~glav~--~-~---~ly~tD~~~~~I~~~dk~tg~~~~~l 244 (628)
T 4a0p_A 193 SNMLGLNREVIADDLPHPFGLTQY--Q-D---YIYWTDWSRRSIERANKTSGQNRTII 244 (628)
T ss_dssp EETTSCSCEEEEECCSCEEEEEEE--T-T---EEEEEETTTTEEEEEETTTCCSCEEE
T ss_pred EcCCCCceEEeeccCCCceEEEEE--C-C---EEEEecCCCCEEEEEECCCCCceEEE
Confidence 99985322222 233456688887 4 4 67777777889999997776544433
|
| >1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A | Back alignment and structure |
|---|
Probab=97.20 E-value=0.0015 Score=72.28 Aligned_cols=198 Identities=10% Similarity=-0.072 Sum_probs=114.0
Q ss_pred cCCCeEEEEeCCC----CCCcceEcCCCCCceEEEEEcCCC-CEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe-eC
Q psy10778 300 ECDNLIRLKMSKE----LPATPVIRPPLGATIATATTAPDC-HTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL-LG 373 (556)
Q Consensus 300 s~Dg~I~lw~~~~----~~~~~~~~~~h~~~V~~i~~s~dg-~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l-~~ 373 (556)
...+.|+.+++.+ ......+. ........+++.+.+ +++++-...+.|.+++.... ....+ ..
T Consensus 425 ~~~~~I~~~~~~g~~~~~~~~~~i~-~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~----------~~~~l~~~ 493 (699)
T 1n7d_A 425 LSQRMICSTQLDRAHGVSSYDTVIS-RDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV----------KRKTLFRE 493 (699)
T ss_dssp TTTTSBEEEESCCCCC-CCCCCBCC-SCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSC----------CEEEECCC
T ss_pred cCCCeEEEEecCCCCCCcceEEEEe-CCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCC----------ceEEEEeC
Confidence 4456777777654 12111211 112234567777544 44444455678888876543 11222 22
Q ss_pred CCccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.......|++.|.+..|+.+.. .+.|.+.++.. .....+.... -.....|+++++++.|+.+.. ..+.|..+
T Consensus 494 ~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG-~~~~~l~~~~-l~~PnGlavd~~~~~LY~aD~----~~~~I~~~ 567 (699)
T 1n7d_A 494 QGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNG-VDIYSLVTEN-IQWPNGITLDLLSGRLYWVDS----KLHSISSI 567 (699)
T ss_dssp SSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSS-CCCCEESCSS-CSSCCCEEECTTTCCEEEEET----TTTEEEEE
T ss_pred CCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCC-CCeeEEEeCC-CCCccEEEEeccCCEEEEEec----CCCeEEEE
Confidence 2234567889986554444332 26788877753 3233332101 345678999998887776653 66789999
Q ss_pred EeCCcEEEEeec----CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 452 TINAQLITSLAS----ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 452 di~g~~i~~~~~----~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
+++|.....+.. -.....|++. .+ .++++....+.|..++..+++.+..+.. ....+++|++.
T Consensus 568 d~dG~~~~~~~~~~~~~~~P~glavd--~~----~lywtd~~~~~V~~~d~~~G~~~~~i~~-~~~~P~~i~v~ 634 (699)
T 1n7d_A 568 DVNGGNRKTILEDEKRLAHPFSLAVF--ED----KVFWTDIINEAIFSANRLTGSDVNLLAE-NLLSPEDMVLF 634 (699)
T ss_dssp CSSSSCCEEECCCSSSCSSCCCCEEE--TT----EEEEECSTTTCEEEEETTTEEEEECCCT-TCSSCCCCCBC
T ss_pred ccCCCceEEEEecCCcCCCceEeEEE--CC----EEEEEeCCCCeEEEEEccCCCceEEeec-CCCCCcEEEEe
Confidence 998654333321 1334566665 33 5777777788999999888988887753 22234455443
|
| >4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.017 Score=59.95 Aligned_cols=158 Identities=8% Similarity=0.006 Sum_probs=97.2
Q ss_pred cEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 377 CVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 377 ~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...+++|+++ ...|..+...+.|+.+|+.+++....... ......++++++++ |+.+..........+..++..
T Consensus 140 ~P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~~---~~~P~giavd~dG~-lyVad~~~~~~~~gv~~~~~~ 215 (433)
T 4hw6_A 140 NIWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTTN---IGQCADVNFTLNGD-MVVVDDQSSDTNTGIYLFTRA 215 (433)
T ss_dssp CCCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECCC---CSCEEEEEECTTCC-EEEEECCSCTTSEEEEEECGG
T ss_pred CCceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeecC---CCCccEEEECCCCC-EEEEcCCCCcccceEEEEECC
Confidence 4568999984 34455444448999999987765544443 56789999999999 444431000001123333433
Q ss_pred CcEE--EEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCCCCeEEEEe-cCCCCCCeEEEEEecCCCEEE-E
Q psy10778 455 AQLI--TSLASELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL-NTNVALPVIAVTYSCDSQHLY-A 529 (556)
Q Consensus 455 g~~i--~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~-~~~h~~~V~~l~~s~dg~~l~-s 529 (556)
+... ..+..-.....++++ + +| +++++-..++.|+.+|..++.....+ ..+....-..++++|+++.|+ +
T Consensus 216 ~~~~~~~~~~~~~~P~giavd--~~~G---~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYva 290 (433)
T 4hw6_A 216 SGFTERLSLCNARGAKTCAVH--PQNG---KIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYII 290 (433)
T ss_dssp GTTCCEEEEEECSSBCCCEEC--TTTC---CEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEE
T ss_pred CCeeccccccccCCCCEEEEe--CCCC---eEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEE
Confidence 2111 122233455678888 7 66 66666667889999998777653332 212223345799999998555 4
Q ss_pred EcCCCcEEEEEcCC
Q psy10778 530 SNTEGLVIIWESSS 543 (556)
Q Consensus 530 gs~Dg~V~vwdl~~ 543 (556)
-...++|+.++...
T Consensus 291 d~~~~~I~~~~~d~ 304 (433)
T 4hw6_A 291 YNGKHCIYRVDYNR 304 (433)
T ss_dssp ETTTTEEEEEEBCT
T ss_pred eCCCCEEEEEeCCC
Confidence 55568899988753
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=96.98 E-value=0.15 Score=50.49 Aligned_cols=189 Identities=11% Similarity=0.102 Sum_probs=109.1
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
..+..+.+.+++..++++ .+|.| |....+. .. -......+...+..+++.+++.+++.+...+..+-+|-
T Consensus 122 ~~~~~i~~~~~~~~~~~~-~~g~v--~~S~DgG---~t----W~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~ 191 (327)
T 2xbg_A 122 GSPRLIKALGNGSAEMIT-NVGAI--YRTKDSG---KN----WQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEP 191 (327)
T ss_dssp SCEEEEEEEETTEEEEEE-TTCCE--EEESSTT---SS----EEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECT
T ss_pred CCeEEEEEECCCCEEEEe-CCccE--EEEcCCC---CC----CEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCC
Confidence 457778777666666555 45643 3332211 10 01122344567889999999888777654443444442
Q ss_pred --CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeec-----CCCeEEEEEeeCC
Q psy10778 405 --NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLAS-----ELRITSVTFSNAP 476 (556)
Q Consensus 405 --~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~-----~~~i~~i~~s~~p 476 (556)
.+-+.+. .. . ...+..+++++++..++++ .++.+++.+.+ |+.-..... ...+.++++. +
T Consensus 192 gG~tW~~~~--~~-~-~~~~~~~~~~~~g~~~~~~------~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~--~ 259 (327)
T 2xbg_A 192 GQTAWEPHN--RT-T-SRRLHNMGFTPDGRLWMIV------NGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYR--T 259 (327)
T ss_dssp TCSSCEEEE--CC-S-SSCEEEEEECTTSCEEEEE------TTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEES--S
T ss_pred CCCceeECC--CC-C-CCccceeEECCCCCEEEEe------CCceEEEecCCCCCeeEeccCCcccCCcceEEEEec--C
Confidence 2223321 22 3 5678899999987665544 57787776544 443333321 2357888888 6
Q ss_pred CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
++ .+++++. +|.| ++....++.-..+.. .....+.++.|.++++ +++++.+|.|.-++-
T Consensus 260 ~~---~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~~-~~~~G~~G~i~~~~~ 320 (327)
T 2xbg_A 260 PN---EVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPDQ-GFILGQKGILLRYVT 320 (327)
T ss_dssp SS---CEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETTE-EEEECSTTEEEEECC
T ss_pred CC---EEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCCc-eEEEcCCceEEEEcC
Confidence 66 5666655 6766 344444544333431 2235678898986554 666777898776653
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.065 Score=51.99 Aligned_cols=222 Identities=9% Similarity=-0.034 Sum_probs=108.7
Q ss_pred CeEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCC-----CcEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 303 NLIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTS-----GNILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~D-----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
..+.++|..+.+....-... ......++. .+++.++.|+.+ ..+.+||..+.... ..+.+..+.....
T Consensus 31 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~----~W~~~~~~p~~r~ 104 (301)
T 2vpj_A 31 DVVEKYDPKTQEWSFLPSITRKRRYVASVS--LHDRIYVIGGYDGRSRLSSVECLDYTADEDG----VWYSVAPMNVRRG 104 (301)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBSCEEEE--ETTEEEEECCBCSSCBCCCEEEEETTCCTTC----CCEEECCCSSCCB
T ss_pred eEEEEEcCCCCeEEeCCCCChhhccccEEE--ECCEEEEEcCCCCCccCceEEEEECCCCCCC----eeEECCCCCCCcc
Confidence 36777777665432221111 111112222 356777888765 35778887654200 0000111111111
Q ss_pred cEEEEEEccCCCEEEEEcCC-----CcEEEEeCCCCeEEEE--eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 377 CVTDLYLCAGFSVAVSSSED-----GTCLLWDINTIGYIRE--IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~D-----g~I~iwdl~~~~~v~~--l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
...++.. ++.+++.|+.+ ..+.++|+.+.+.... +.. . ......+.+ ++..++.|+.........+.
T Consensus 105 ~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~-r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~ 178 (301)
T 2vpj_A 105 LAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQT-A-REGAGLVVA--SGVIYCLGGYDGLNILNSVE 178 (301)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSS-C-CBSCEEEEE--TTEEEEECCBCSSCBCCCEE
T ss_pred ceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCC-C-cccceEEEE--CCEEEEECCCCCCcccceEE
Confidence 1222222 56777777644 3588999887754332 222 1 122222222 55666666532211235688
Q ss_pred EEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEEecC-CCCCCeEEEEE
Q psy10778 450 LHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLTLNT-NVALPVIAVTY 520 (556)
Q Consensus 450 iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~ 520 (556)
+||+....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+-...-.. ........+
T Consensus 179 ~~d~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~-- 250 (301)
T 2vpj_A 179 KYDPHTGHWTNVTPMATKRSGAGVALL---ND---HIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGAT-- 250 (301)
T ss_dssp EEETTTTEEEEECCCSSCCBSCEEEEE---TT---EEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE--
T ss_pred EEeCCCCcEEeCCCCCcccccceEEEE---CC---EEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEE--
Confidence 9998744333332 11222233333 34 678887764 4689999877654332211 111112222
Q ss_pred ecCCCEEEEEcCC-----CcEEEEEcCCC
Q psy10778 521 SCDSQHLYASNTE-----GLVIIWESSSH 544 (556)
Q Consensus 521 s~dg~~l~sgs~D-----g~V~vwdl~~~ 544 (556)
.-++++++.|+.+ ..+.+||+.+.
T Consensus 251 ~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 279 (301)
T 2vpj_A 251 VLRGRLYAIAGYDGNSLLSSIECYDPIID 279 (301)
T ss_dssp EETTEEEEECCBCSSSBEEEEEEEETTTT
T ss_pred EECCEEEEEcCcCCCcccccEEEEcCCCC
Confidence 2367777777765 46788898763
|
| >3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A* | Back alignment and structure |
|---|
Probab=96.90 E-value=0.5 Score=51.17 Aligned_cols=229 Identities=7% Similarity=-0.086 Sum_probs=134.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceE-cCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVI-RPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~-~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|..+. .+.|+..++......... .......+.++++.+.+..|+.+. ..+.|+.++.+.. .....+.
T Consensus 319 ~Ll~~~-~~~i~~i~l~~~~~~~~~~~~~~l~~~~~ld~d~~~~~ly~sD~~~~~I~r~~~~g~---------~~~~v~~ 388 (619)
T 3s94_A 319 LLLLAR-RTDLRRISLDTPDFTDIVLQLEDIRHAIAIDYDPVEGYIYWTDDEVRAIRRSFIDGS---------GSQFVVT 388 (619)
T ss_dssp EEEEEE-SSCEEEEESSSTTCCCEECCCSCCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEEC
T ss_pred EEEEEc-ccceEEEecCCCccceeEEeccccCccEEEEEEcCCCeEEEEeCCCCeEEEEEcCCC---------ccEEEEE
Confidence 444433 456777777654432222 112345678999998655655554 5677777776542 1112233
Q ss_pred CCCccEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCAG-FSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~~-~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.......++++... +++.++-+..+.|.+.++... ..+.+.... -...+.|+++|..+.|..+... ..+.|...
T Consensus 389 ~~~~~p~GlAvD~~~~~lY~tD~~~~~I~v~~~~G~-~~~~l~~~~-l~~P~~iavdp~~G~ly~tD~g---~~~~I~r~ 463 (619)
T 3s94_A 389 AQIAHPDGIAVDWVARNLYWTDTGTDRIEVTRLNGT-MRKILISED-LEEPRAIVLDPMVGYMYWTDWG---EIPKIERA 463 (619)
T ss_dssp SSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSC-SCEEEECTT-CCSEEEEEEETTTTEEEEEECS---SSCEEEEE
T ss_pred CCCCCcCceEEecccCcEEEEeCCCCcEEEEeCCCC-eEEEEEECC-CCCeeeEEEEcCCCcEEEecCC---CCCEEEEE
Confidence 33356678999864 446666667889999998743 333332202 4678999999986777665410 23677777
Q ss_pred EeCCcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 452 TINAQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 452 di~g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
+++|.....+. .-...+.++++ +++. ++.++-+..+.|...++.... .+.+.........+++...+ .+.++
T Consensus 464 ~~dG~~~~~l~~~~l~~P~GlalD--~~~~--~LY~aD~~~~~I~~~~~dG~~-~~~~~~~~l~~P~glav~~~-~ly~t 537 (619)
T 3s94_A 464 ALDGSDRVVLVNTSLGWPNGLALD--YDEG--KIYWGDAKTDKIEVMNTDGTG-RRVLVEDKIPHIFGFTLLGD-YVYWT 537 (619)
T ss_dssp ETTSCSCEEEECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEESSSCC-CEEEEECCCCSSCCEEEETT-EEEEE
T ss_pred ccCCCccEEEEeCCCCCCeeeEEc--ccCC--EEEEEECCCCEEEEEecCCCc-eEEEeccCCCCcEEEEEECC-EEEEe
Confidence 77765433332 23577899999 6441 555555566889999874332 22221111223346666543 34444
Q ss_pred EcCCCcEEEEEcCCC
Q psy10778 530 SNTEGLVIIWESSSH 544 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~ 544 (556)
-...+.|...+..++
T Consensus 538 D~~~~~I~~~~k~~g 552 (619)
T 3s94_A 538 DWQRRSIERVHKRSA 552 (619)
T ss_dssp CTTSSCEEEEESSSC
T ss_pred ecCCCeEEEEEcCCC
Confidence 445677877777776
|
| >1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.01 Score=65.09 Aligned_cols=202 Identities=10% Similarity=0.059 Sum_probs=110.6
Q ss_pred EEEEcC-CCCEEEEEeCCC-----------cEEEEEeeeccCcccccccCCCeEeeC-CCccEEEEEEccCCCEEEEEc-
Q psy10778 329 TATTAP-DCHTLWLGLTSG-----------NILVYEYELNASTNKIEFCKPPTILLG-HSACVTDLYLCAGFSVAVSSS- 394 (556)
Q Consensus 329 ~i~~s~-dg~~l~tgs~Dg-----------~I~vwd~~~~~~~~~~~~~~~~~~l~~-h~~~V~~l~~s~~~~~l~sgs- 394 (556)
++++.+ +++.++.|+.+. .+.+||..++.. ..+..+.. +.....++++..++++++.|+
T Consensus 190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w-------~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~ 262 (656)
T 1k3i_A 190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIV-------SDRTVTVTKHDMFCPGISMDGNGQIVVTGGN 262 (656)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCB-------CCCEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcE-------EeCcccCCCCCCccccccCCCCCCEEEeCCC
Confidence 455666 888888887543 477787765521 22233322 233344567788999999988
Q ss_pred CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEee-cCcCCCCeEEEEEeCCcEEEEeec------CCCe
Q psy10778 395 EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQ-TTKTGGSILRLHTINAQLITSLAS------ELRI 467 (556)
Q Consensus 395 ~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~-~~~~~d~~I~iwdi~g~~i~~~~~------~~~i 467 (556)
.+..+.+||..+.+....-.. +....-.+++..++++.++.|+. ++......+.+||.....-..+.. ...-
T Consensus 263 ~~~~v~~yd~~t~~W~~~~~~-~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~ 341 (656)
T 1k3i_A 263 DAKKTSLYDSSSDSWIPGPDM-QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 341 (656)
T ss_dssp STTCEEEEEGGGTEEEECCCC-SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CCCceEEecCcCCceeECCCC-CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCcccccccccc
Confidence 456899999988755433222 10222335566678888888872 221123578999987433333210 0000
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCC---------eEEEEeCCCCeEEEEecCC--------CCCCeEEEEEec-CCCEEEE
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDG---------TIQLWSGYKLAHLLTLNTN--------VALPVIAVTYSC-DSQHLYA 529 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg---------~I~iwd~~~~~~~~~~~~~--------h~~~V~~l~~s~-dg~~l~s 529 (556)
....+. .++ ++++.|+.+| .+..||..+.......... ....-.++.+.. ++++++.
T Consensus 342 ~~~~~~--~~~---~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~ 416 (656)
T 1k3i_A 342 KQGLYR--SDN---HAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTF 416 (656)
T ss_dssp TTGGGT--TTC---SCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEE
T ss_pred ccceee--cCC---ceEEEECCCCcEEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEE
Confidence 001111 233 4555555443 4677887666543322210 011234445543 6778888
Q ss_pred EcCCC-----------cEEEEEcCC
Q psy10778 530 SNTEG-----------LVIIWESSS 543 (556)
Q Consensus 530 gs~Dg-----------~V~vwdl~~ 543 (556)
|+.++ .|.+||..+
T Consensus 417 GG~~~~~~~~~~~~~~~v~~yd~~~ 441 (656)
T 1k3i_A 417 GGSPDYQDSDATTNAHIITLGEPGT 441 (656)
T ss_dssp CCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred eCCCCCCCCCcCCcceEEEcCCCCC
Confidence 87543 577777655
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.21 Score=48.74 Aligned_cols=229 Identities=7% Similarity=-0.101 Sum_probs=111.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC----C---C----cEEEEEeeeccCccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT----S---G----NILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~----D---g----~I~vwd~~~~~~~~~~~ 363 (556)
+++.|+ ..+..||..+++....-...........+...+++.++.|+. + . .+.+||..+.... ..
T Consensus 7 l~~~GG--~~~~~yd~~~~~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~--~~ 82 (315)
T 4asc_A 7 IFMISE--EGAVAYDPAANECYCASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWL--GM 82 (315)
T ss_dssp EEEEET--TEEEEEETTTTEEEEEECCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEE--EC
T ss_pred EEEEcC--CceEEECCCCCeEecCCCCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEE--EC
Confidence 555666 578889988776543111111122333344457788888884 1 1 1555555443110 00
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSED--------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D--------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
. .......+| ..+.+ ++.+++.|+.+ ..+.++|..+.+....-..+. ...-.+++. -++..++
T Consensus 83 ~-~~p~~r~~~----~~~~~--~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv 153 (315)
T 4asc_A 83 P-PLPSPRCLF----GLGEA--LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPY-VVYGHTVLS-HMDLVYV 153 (315)
T ss_dssp C-CBSSCEESC----EEEEE--TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEE-ETTEEEE
T ss_pred C-CCCcchhce----eEEEE--CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCC-cccceeEEE-ECCEEEE
Confidence 0 000111122 12222 56677777632 468899998875433212101 111112222 3455566
Q ss_pred EEee-cCcCCCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCC-----eEEEEeCCCCeEEEE
Q psy10778 436 SVLQ-TTKTGGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDG-----TIQLWSGYKLAHLLT 506 (556)
Q Consensus 436 s~s~-~~~~~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg-----~I~iwd~~~~~~~~~ 506 (556)
.|+. ........+.+||+....-..+. ....-.+++.. ++ ++++.|+.++ .+.+||..+.+-...
T Consensus 154 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 227 (315)
T 4asc_A 154 IGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGATVH---DG---RIIVAAGVTDTGLTSSAEVYSITDNKWAPF 227 (315)
T ss_dssp ECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEEE---TT---EEEEEEEECSSSEEEEEEEEETTTTEEEEE
T ss_pred EeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEEEE---CC---EEEEEeccCCCCccceEEEEECCCCeEEEC
Confidence 6653 11112357889998744333332 12222233333 45 6788877654 588899877654332
Q ss_pred ecC-CCCCCeEEEEEecCCCEEEEEcCCC--------------cEEEEEcCCC
Q psy10778 507 LNT-NVALPVIAVTYSCDSQHLYASNTEG--------------LVIIWESSSH 544 (556)
Q Consensus 507 ~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg--------------~V~vwdl~~~ 544 (556)
-.. ...... +++ .-++++++.|+.++ .+.+||+.+.
T Consensus 228 ~~~p~~r~~~-~~~-~~~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 278 (315)
T 4asc_A 228 EAFPQERSSL-SLV-SLVGTLYAIGGFATLETESGELVPTELNDIWRYNEEEK 278 (315)
T ss_dssp CCCSSCCBSC-EEE-EETTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTT
T ss_pred CCCCCcccce-eEE-EECCEEEEECCccccCcCCccccccccCcEEEecCCCC
Confidence 211 111111 222 22567777777532 4678888764
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.61 E-value=0.12 Score=50.13 Aligned_cols=229 Identities=9% Similarity=-0.022 Sum_probs=113.9
Q ss_pred eEEeccC--CCeEEEEeCCCCCCcceEcC-CCCCceEEEEEcCCCCEEEEEeCC----CcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNEC--DNLIRLKMSKELPATPVIRP-PLGATIATATTAPDCHTLWLGLTS----GNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~--Dg~I~lw~~~~~~~~~~~~~-~h~~~V~~i~~s~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.|+. ...+.++|..+.+....-.. .....-.++. -++..++.|+.+ ..+.+||..+.... .
T Consensus 14 l~~~GG~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~--~~~~lyv~GG~~~~~~~~~~~~d~~~~~W~-------~ 84 (306)
T 3ii7_A 14 RIALFGGSQPQSCRYFNPKDYSWTDIRCPFEKRRDAACVF--WDNVVYILGGSQLFPIKRMDCYNVVKDSWY-------S 84 (306)
T ss_dssp EEEEECCSSTTSEEEEETTTTEEEECCCCSCCCBSCEEEE--ETTEEEEECCBSSSBCCEEEEEETTTTEEE-------E
T ss_pred EEEEeCCCCCceEEEecCCCCCEecCCCCCcccceeEEEE--ECCEEEEEeCCCCCCcceEEEEeCCCCeEE-------E
Confidence 4555554 36788888876643322111 1111122222 256777888755 45677776543111 0
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCC------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSED------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~D------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
+..+........++.+ ++++++.|+.+ ..+.+||..+.+....-..+. ...-.+++. -++..++.|+...
T Consensus 85 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~-~~~~iyv~GG~~~ 160 (306)
T 3ii7_A 85 KLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLT-QRCSHGMVE-ANGLIYVCGGSLG 160 (306)
T ss_dssp EECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSS-CCBSCEEEE-ETTEEEEECCEES
T ss_pred CCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcC-CcceeEEEE-ECCEEEEECCCCC
Confidence 0111111111122222 56777777755 468899999876544322201 111112222 2455666665332
Q ss_pred cCC----CCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEEecC
Q psy10778 442 KTG----GSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 442 ~~~----d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~~ 509 (556)
... ...+.+||+....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+-...-..
T Consensus 161 ~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~ 234 (306)
T 3ii7_A 161 NNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLVFV---KD---KIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPM 234 (306)
T ss_dssp CTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT---EEEEECCEETTEEBCCEEEEETTTTEEEECCCC
T ss_pred CCCcccccceEEEeCCCCCeEEECCCccchhhcceEEEE---CC---EEEEEeCCCCCCCCceEEEeeCCCCcEEECCCC
Confidence 212 466889998754333332 12222233333 34 677777643 3588899877653322111
Q ss_pred -CCCCCeEEEEEecCCCEEEEEcCC-----CcEEEEEcCCC
Q psy10778 510 -NVALPVIAVTYSCDSQHLYASNTE-----GLVIIWESSSH 544 (556)
Q Consensus 510 -~h~~~V~~l~~s~dg~~l~sgs~D-----g~V~vwdl~~~ 544 (556)
........+.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 235 p~~r~~~~~~~~--~~~i~v~GG~~~~~~~~~~~~yd~~~~ 273 (306)
T 3ii7_A 235 PWKGVTVKCAAV--GSIVYVLAGFQGVGRLGHILEYNTETD 273 (306)
T ss_dssp SCCBSCCEEEEE--TTEEEEEECBCSSSBCCEEEEEETTTT
T ss_pred CCCccceeEEEE--CCEEEEEeCcCCCeeeeeEEEEcCCCC
Confidence 11112222222 67788888754 46888998773
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.24 Score=47.96 Aligned_cols=192 Identities=11% Similarity=0.055 Sum_probs=95.0
Q ss_pred CCCEEEEEeCCC-----cEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC-----cEEEEeC
Q psy10778 335 DCHTLWLGLTSG-----NILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG-----TCLLWDI 404 (556)
Q Consensus 335 dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg-----~I~iwdl 404 (556)
++..++.|+.++ .+.+||..+..... +..+........++.+ ++.+++.|+.++ .+.+||+
T Consensus 61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~-------~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~ 131 (302)
T 2xn4_A 61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTS-------VANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNI 131 (302)
T ss_dssp TTEEEEESCBCSSSBCCCEEEEETTTTEEEE-------ECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEET
T ss_pred CCEEEEEeCcCCCccccceEEECCCCCceee-------CCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeC
Confidence 567778887553 46677765431110 0111111111122222 567777777553 5778898
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC--CCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCC
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT--GGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGV 479 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~--~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~ 479 (556)
.+.+....-..+. ...-.+++.. ++..++.|+..... ....+.+||+....-..+. ....-.+++.. ++
T Consensus 132 ~~~~W~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~- 205 (302)
T 2xn4_A 132 KSNEWFHVAPMNT-RRSSVGVGVV-GGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVGVL---NN- 205 (302)
T ss_dssp TTTEEEEECCCSS-CCBSCEEEEE-TTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT-
T ss_pred CCCeEeecCCCCC-cccCceEEEE-CCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEEEE---CC-
Confidence 8776443322201 1111222222 45555555532211 1346888998744333321 12222233333 45
Q ss_pred cceEEEEEeCC-----CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCC-----cEEEEEcCCC
Q psy10778 480 SQNVIVTGHSD-----GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEG-----LVIIWESSSH 544 (556)
Q Consensus 480 ~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg-----~V~vwdl~~~ 544 (556)
++++.|+.+ ..+.+||..+.+-...-.......-.+++ .-++++++.|+.++ .+.+||+.+.
T Consensus 206 --~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~-~~~~~i~v~GG~~~~~~~~~v~~yd~~~~ 277 (302)
T 2xn4_A 206 --LLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVC-AVNGLLYVVGGDDGSCNLASVEYYNPTTD 277 (302)
T ss_dssp --EEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBCSSSBCCCEEEEETTTT
T ss_pred --EEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEE-EECCEEEEECCcCCCcccccEEEEcCCCC
Confidence 688888754 36889998776543322111111111222 23677777777654 4899998763
|
| >3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=96.43 E-value=0.11 Score=54.50 Aligned_cols=161 Identities=7% Similarity=0.027 Sum_probs=97.9
Q ss_pred cEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCeEEEEeCCCC--CCCCeeEEEE-------eCCCCeEEEEeecCcC--
Q psy10778 377 CVTDLYLCAG--FSVAVSSSEDGTCLLWDINTIGYIREIPCVD--PNTPVSHVTM-------SETNGEIASVLQTTKT-- 443 (556)
Q Consensus 377 ~V~~l~~s~~--~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h--~~~~V~~l~~-------sp~~~~i~s~s~~~~~-- 443 (556)
....|+++|. +.++++....+.|++.|+.++.....+.. . .......++| +++++.|+++......
T Consensus 140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~-~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~ 218 (496)
T 3kya_A 140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNI-NTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGD 218 (496)
T ss_dssp SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECC-TTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGG
T ss_pred CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEcc-CccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCcc
Confidence 4678999983 44555544457788999987665544433 1 0135889999 9999977766521000
Q ss_pred CCCeEEEEEeCC--cEE-----EEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCCeEEEEeCC-------CCeE-----
Q psy10778 444 GGSILRLHTINA--QLI-----TSLASELRITSVTFSNAP-EGVSQNVIVTGHSDGTIQLWSGY-------KLAH----- 503 (556)
Q Consensus 444 ~d~~I~iwdi~g--~~i-----~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~I~iwd~~-------~~~~----- 503 (556)
....|.+++... ... ..+..-.....++++ | ++ .++++-..++.|..+|+. ++..
T Consensus 219 ~~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavd--p~~g---~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~ 293 (496)
T 3kya_A 219 ESPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIH--PING---ELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIV 293 (496)
T ss_dssp GEEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEEC--TTTC---CEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBG
T ss_pred cCceEEEEecCCCCceeecccceeeccCCCceEEEEc--CCCC---eEEEEECCCCEEEEEecccccccccCceeecccc
Confidence 012366665332 321 122222345677888 6 45 677777788999999986 4443
Q ss_pred ------EEE-ecCCCCCCeEEEEEecCCCEEE-EEcCCCcEEEEEcCC
Q psy10778 504 ------LLT-LNTNVALPVIAVTYSCDSQHLY-ASNTEGLVIIWESSS 543 (556)
Q Consensus 504 ------~~~-~~~~h~~~V~~l~~s~dg~~l~-sgs~Dg~V~vwdl~~ 543 (556)
... +..+.....+.|+|+|+|+.|+ +-+...+|+.++...
T Consensus 294 ~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~dg 341 (496)
T 3kya_A 294 KNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYDE 341 (496)
T ss_dssp GGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEET
T ss_pred cccccccceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecCC
Confidence 112 2212345578999999999544 445677888876543
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=96.41 E-value=0.44 Score=47.65 Aligned_cols=189 Identities=11% Similarity=0.025 Sum_probs=109.1
Q ss_pred CCCeEEEEeCCCC--CCcceEcCC-----CCCceEEEEEcC--CCC-EEEEE-eC--CCcEEEEEeeeccCcccccccCC
Q psy10778 301 CDNLIRLKMSKEL--PATPVIRPP-----LGATIATATTAP--DCH-TLWLG-LT--SGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 301 ~Dg~I~lw~~~~~--~~~~~~~~~-----h~~~V~~i~~s~--dg~-~l~tg-s~--Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.+|.|.++|.++. +....-..+ ..-....+.+.+ ++. +|+++ .. +.+|.+|+++..... . ..
T Consensus 81 ~~G~I~~~d~~~~~~~~~~l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~---~--~~ 155 (355)
T 3sre_A 81 KSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKS---L--LH 155 (355)
T ss_dssp -CCEEEEEETTSSSCCEEECEEECSSCCGGGCCEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTE---E--EE
T ss_pred CCCeEEEEecCCCCCceEEEEccCCCCCcCceeeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCE---E--EE
Confidence 5788999998732 221111111 122456666654 444 34444 33 568899998764211 1 22
Q ss_pred CeEeeCC-CccEEEEEEccCCCEEEEEc-----------------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC
Q psy10778 368 PTILLGH-SACVTDLYLCAGFSVAVSSS-----------------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 368 ~~~l~~h-~~~V~~l~~s~~~~~l~sgs-----------------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp 429 (556)
+..+.+. -...+++.+.++|+..++.. ..|.+.-+|.. +....... -...+.++|+|
T Consensus 156 ~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~--~~~~~~~~---l~~pNGia~sp 230 (355)
T 3sre_A 156 LKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN--DVRVVAEG---FDFANGINISP 230 (355)
T ss_dssp EEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT--CCEEEEEE---ESSEEEEEECT
T ss_pred EeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC--eEEEeecC---CcccCcceECC
Confidence 3344432 24578999999998877764 12445555543 32222222 34578999999
Q ss_pred CCCeEEEEeecCcCCCCeEEEEEeC--CcEE--EEeecCCCeEEEEEeeCC-CCCcceEEEEEeCC-CeEEEEeCC--CC
Q psy10778 430 TNGEIASVLQTTKTGGSILRLHTIN--AQLI--TSLASELRITSVTFSNAP-EGVSQNVIVTGHSD-GTIQLWSGY--KL 501 (556)
Q Consensus 430 ~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i--~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~d-g~I~iwd~~--~~ 501 (556)
|++.+..+.. ..+.|..|+++ |.+. ..+......-.+++. + +| ++.+++..+ +.|..|+.. .+
T Consensus 231 Dg~~lYvadt----~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~vD--~e~G---~lwva~~~~g~~v~~~~P~~~~~ 301 (355)
T 3sre_A 231 DGKYVYIAEL----LAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVD--PVTG---DLWVGCHPNGMRIFFYDAENPPG 301 (355)
T ss_dssp TSSEEEEEEG----GGTEEEEEEECTTSCEEEEEEEECSSEEEEEEEC--TTTC---CEEEEEESCHHHHHSCCTTSCCC
T ss_pred CCCEEEEEeC----CCCeEEEEEECCCCcEecCEEEeCCCCCceEEEe--CCCC---cEEEEecCCceEEEEECCCCCCC
Confidence 9998887763 56899999986 4432 233345667788888 7 48 777756533 344444433 24
Q ss_pred eEEEEec
Q psy10778 502 AHLLTLN 508 (556)
Q Consensus 502 ~~~~~~~ 508 (556)
..+..+.
T Consensus 302 s~v~rI~ 308 (355)
T 3sre_A 302 SEVLRIQ 308 (355)
T ss_dssp EEEEEEE
T ss_pred CEEEEEE
Confidence 5555554
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=96.37 E-value=0.13 Score=52.36 Aligned_cols=148 Identities=16% Similarity=0.174 Sum_probs=100.4
Q ss_pred EEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCC--CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc--
Q psy10778 382 YLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVD--PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ-- 456 (556)
Q Consensus 382 ~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h--~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~-- 456 (556)
..+.+|..++.+- ++.||.-++......+.+..++ .-..|..+..+|+|.++|..+ +..|.+..+. +.
T Consensus 27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g------~~~V~Vv~LP~~~~~ 99 (452)
T 3pbp_A 27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN------DNEIFVMEVPWGYSN 99 (452)
T ss_dssp EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC------SSEEEEEECCTTCSC
T ss_pred EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec------CCeEEEEEecCcccc
Confidence 3455666666653 4778888887544455554410 023688999999999999985 6788888874 21
Q ss_pred ----------EEEEee-------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecC--------
Q psy10778 457 ----------LITSLA-------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNT-------- 509 (556)
Q Consensus 457 ----------~i~~~~-------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~-------- 509 (556)
...++. ....|..+.|+ |-+.....|++-..|+.|++||+... ++. .+..
T Consensus 100 ~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWH--Pl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~-~L~k~~~~fg~d 176 (452)
T 3pbp_A 100 VEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFH--PKSYRDSCIVVLKEDDTITMFDILNSQEKPI-VLNKPNNSFGLD 176 (452)
T ss_dssp CCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEEC--TTBGGGCEEEEEETTSCEEEEETTCTTSCCE-EESCCCSEEESC
T ss_pred CcccccccccceeEEEcCCcccCCCCceeEEEec--cccCCCCeEEEEecCCEEEEEEcccCCCCCc-chhccccccCCC
Confidence 122332 24689999999 66654479999999999999999642 122 2221
Q ss_pred CCCCCeEEEEEecCCCEEEEEc--CCCcEEEE
Q psy10778 510 NVALPVIAVTYSCDSQHLYASN--TEGLVIIW 539 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs--~Dg~V~vw 539 (556)
.....|.+++|..++-.|+..+ ++|.|+-.
T Consensus 177 ~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl 208 (452)
T 3pbp_A 177 ARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF 208 (452)
T ss_dssp SSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred cccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence 2236789999999887777755 77887654
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=96.10 E-value=0.54 Score=45.81 Aligned_cols=227 Identities=8% Similarity=-0.024 Sum_probs=108.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC----CCc-------EEEEEeeeccCccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT----SGN-------ILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~----Dg~-------I~vwd~~~~~~~~~~~ 363 (556)
+++.|+. .+..||..+.+....-...........+...++..++.|+. ++. +.+||..+....
T Consensus 18 i~~~GG~--~~~~yd~~~~~W~~~~~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~---- 91 (318)
T 2woz_A 18 ILLVNDT--AAVAYDPMENECYLTALAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWV---- 91 (318)
T ss_dssp EEEECSS--EEEEEETTTTEEEEEEECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEE----
T ss_pred hhhcccc--ceEEECCCCCceecccCCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEE----
Confidence 5666664 37888887765443211111122223334457788888883 121 555555433110
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-------CcEEEEeCCCCeEEEEeCCCCCCCCe-eEEEEeCCCCeEE
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-------GTCLLWDINTIGYIREIPCVDPNTPV-SHVTMSETNGEIA 435 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~I~iwdl~~~~~v~~l~~~h~~~~V-~~l~~sp~~~~i~ 435 (556)
.+..+.........+.+ ++.+.+.|+.+ ..+.++|+.+.+....-.. . .... .+++. .++..++
T Consensus 92 ---~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~-p-~~r~~~~~~~-~~~~iyv 163 (318)
T 2woz_A 92 ---GLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNL-P-IKVYGHNVIS-HNGMIYC 163 (318)
T ss_dssp ---ECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCC-S-SCEESCEEEE-ETTEEEE
T ss_pred ---ECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCC-C-CcccccEEEE-ECCEEEE
Confidence 00111111111122222 56777777654 3578889987765433222 1 1111 12222 3455556
Q ss_pred EEeecC-cCCCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEE
Q psy10778 436 SVLQTT-KTGGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLT 506 (556)
Q Consensus 436 s~s~~~-~~~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~ 506 (556)
.|+... ......+.+||+....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+-...
T Consensus 164 ~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~ 237 (318)
T 2woz_A 164 LGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVAIH---KG---KIVIAGGVTEDGLSASVEAFDLKTNKWEVM 237 (318)
T ss_dssp ECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT---EEEEEEEEETTEEEEEEEEEETTTCCEEEC
T ss_pred EcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEEEE---CC---EEEEEcCcCCCCccceEEEEECCCCeEEEC
Confidence 655321 112356889998744333332 12222233333 35 677777643 3577888876553222
Q ss_pred --ecCCCCCCeEEEEEecCCCEEEEEcCC--------------CcEEEEEcCCC
Q psy10778 507 --LNTNVALPVIAVTYSCDSQHLYASNTE--------------GLVIIWESSSH 544 (556)
Q Consensus 507 --~~~~h~~~V~~l~~s~dg~~l~sgs~D--------------g~V~vwdl~~~ 544 (556)
+. ...... +++ .-++++++.|+.+ ..+.+||+.+.
T Consensus 238 ~~~p-~~r~~~-~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~ 288 (318)
T 2woz_A 238 TEFP-QERSSI-SLV-SLAGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKK 288 (318)
T ss_dssp CCCS-SCCBSC-EEE-EETTEEEEECCBCCBC----CCBCCBCCCEEEEETTTT
T ss_pred CCCC-Ccccce-EEE-EECCEEEEECCeeccCCCCceeccceeeeEEEEeCCCC
Confidence 21 111111 222 2356777777654 35788888773
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=96.02 E-value=3.3 Score=48.17 Aligned_cols=229 Identities=10% Similarity=0.070 Sum_probs=124.4
Q ss_pred ceEEeccC-CCeEEEEeCCCCCCcceEcCCCCCceEEEEEc--CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNEC-DNLIRLKMSKELPATPVIRPPLGATIATATTA--PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~-Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s--~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.+++.|.+ |++++++++.+.+.......+......++.+. ....+|..|-.||.+..+.++.. .+..... ...
T Consensus 572 ~~~aVg~~~d~tv~I~sL~~l~~~~~~~L~~~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~--tg~l~d~--r~~ 647 (1158)
T 3ei3_A 572 PLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSHYLLCALGDGALFYFGLNIE--TGLLSDR--KKV 647 (1158)
T ss_dssp SEEEEEETTTTEEEEEETTTCCEEEEEECCSSCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTT--TCCEEEE--EEE
T ss_pred cEEEEEECCCCEEEEEECCCCCeEEEEECCCCCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCC--CCccccc--eeE
Confidence 38899997 99999999986554443333222233444332 23467899999999887776532 1111110 011
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE-EEeCCCCCCCCeeE-EEEeCC--CCeEEEEeecCcCCCC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI-REIPCVDPNTPVSH-VTMSET--NGEIASVLQTTKTGGS 446 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v-~~l~~~h~~~~V~~-l~~sp~--~~~i~s~s~~~~~~d~ 446 (556)
.-| ..++.-..+...+..-+.+..+....++.-+ ++.. ..+.. ..+.. ..|+.. .+-++.. .++
T Consensus 648 ~LG-~~pv~L~~~~~~~~~~V~a~s~rp~liy~~~-~~l~~s~l~~----~~v~~~~~F~se~~~~g~v~~------~~~ 715 (1158)
T 3ei3_A 648 TLG-TQPTVLRTFRSLSTTNVFACSDRPTVIYSSN-HKLVFSNVNL----KEVNYMCPLNSDGYPDSLALA------NNS 715 (1158)
T ss_dssp ECC-SSCCEEEEEESSSCEEEEEESSSCEEEEESS-SSEEEEEBSS----SCCCEEEEECCSSSTTEEEEE------CSS
T ss_pred EcC-CCceEEEEEeeCCceeEEEECCCCEEEEEcC-CceEEeccCh----HHhceEeccCcccCCCcEEEE------cCC
Confidence 222 3344444444444333333334444444433 2322 22322 22332 334332 2334444 355
Q ss_pred eEEEEEeC---CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC----------------------------------
Q psy10778 447 ILRLHTIN---AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHS---------------------------------- 489 (556)
Q Consensus 447 ~I~iwdi~---g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---------------------------------- 489 (556)
.+++..++ .-.+..+.....+..++++ |+. +.++++..
T Consensus 716 ~LrI~~i~~~~~~~~~~ipL~~Tprri~y~--~~~---~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 790 (1158)
T 3ei3_A 716 TLTIGTIDEIQKLHIRTVPLYESPRKICYQ--EVS---QCFGVLSSRIEVQDTSGGTTALRPSASTQALSSSVSSSKLFS 790 (1158)
T ss_dssp CEEEEEECCSSSEEEEEEECSSEEEEEEEE--GGG---TEEEEEEEEEEEECSSSSEEESSCCHHHHCSEEEECCCCCC-
T ss_pred ceEEEEecccCCeeEEEEeCCCCceEEEEc--CCC---CEEEEEEEeccccccccccchhhhhhhhhhhhhccccccccc
Confidence 68888774 3345555667778888888 443 33322210
Q ss_pred ---------------CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe---cC-CCEEEEEc----------CCCcEEEEE
Q psy10778 490 ---------------DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS---CD-SQHLYASN----------TEGLVIIWE 540 (556)
Q Consensus 490 ---------------dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s---~d-g~~l~sgs----------~Dg~V~vwd 540 (556)
.+.|++.|-.+.+.+..+.......+.+++.. .+ ..++++|+ ..|+|++++
T Consensus 791 ~~~~~~~~~~g~~~~~s~i~lidp~t~~~i~~~~l~~nE~~~sv~~v~~~~~~~~~lvVGTa~~~~~e~~~~~Gri~vf~ 870 (1158)
T 3ei3_A 791 SSTAPHETSFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEEAEPKQGRIVVFQ 870 (1158)
T ss_dssp ---------CCCEEEEEEEEEEETTTCCEEEEEECCTTEEEEEEEEECCTTCCCCEEEEEEEECCTTCSSCCCEEEEEEE
T ss_pred ccccCchhhcCCceeeEEEEEEeCCCCeEEEEEeCCCCcceEEEEEEEEccCCCEEEEEEeeecCCCCCCCCceEEEEEE
Confidence 13477888777887777665444556666543 22 46888876 358899999
Q ss_pred cCC
Q psy10778 541 SSS 543 (556)
Q Consensus 541 l~~ 543 (556)
+.+
T Consensus 871 v~~ 873 (1158)
T 3ei3_A 871 YSD 873 (1158)
T ss_dssp EET
T ss_pred EEC
Confidence 863
|
| >3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A* | Back alignment and structure |
|---|
Probab=95.97 E-value=0.62 Score=46.60 Aligned_cols=198 Identities=10% Similarity=0.062 Sum_probs=111.0
Q ss_pred EEEEEcCCCCEEEEE------------eCCCcEEEEEeeeccCcccccccCCCeEeeC-----CCccEEEEEEcc--CCC
Q psy10778 328 ATATTAPDCHTLWLG------------LTSGNILVYEYELNASTNKIEFCKPPTILLG-----HSACVTDLYLCA--GFS 388 (556)
Q Consensus 328 ~~i~~s~dg~~l~tg------------s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-----h~~~V~~l~~s~--~~~ 388 (556)
-.++..++|..++++ ..+|.|.++|........ +.+ .+.+ ..-....+.+.+ ++.
T Consensus 53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~-----~~l-~~~g~~~~~~~f~PhGi~~~~d~dg~ 126 (355)
T 3sre_A 53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAV-----SEL-EIIGNTLDISSFNPHGISTFIDDDNT 126 (355)
T ss_dssp CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCE-----EEC-EEECSSCCGGGCCEEEEEEEECTTCC
T ss_pred ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCce-----EEE-EccCCCCCcCceeeeeeEEEECCCCc
Confidence 345566766444443 168889999876421111 111 1222 223566777755 354
Q ss_pred --EEEEEcC--CCcEEEEeCCCC----eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeec--C----------cCCCCeE
Q psy10778 389 --VAVSSSE--DGTCLLWDINTI----GYIREIPCVDPNTPVSHVTMSETNGEIASVLQT--T----------KTGGSIL 448 (556)
Q Consensus 389 --~l~sgs~--Dg~I~iwdl~~~----~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~--~----------~~~d~~I 448 (556)
+++.-.. +.++-+|++... ..+.++.+ ..-...+.+++.++|...++...- . ....+.|
T Consensus 127 ~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g-~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~v 205 (355)
T 3sre_A 127 VYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRH-KLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFV 205 (355)
T ss_dssp EEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECC-TTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEE
T ss_pred EEEEEEECCCCCCeEEEEEEECCCCEEEEEecccc-CCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEE
Confidence 3444333 567888776542 33455655 324568899999998766654310 0 0023455
Q ss_pred EEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCC-CeE--EEEecCCCCCCeEEEEEec-C
Q psy10778 449 RLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYK-LAH--LLTLNTNVALPVIAVTYSC-D 523 (556)
Q Consensus 449 ~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~-~~~--~~~~~~~h~~~V~~l~~s~-d 523 (556)
.-+|. ++.......-...+.++|+ ||+ +.|++ -+..+.|..|++.. ++. .+.+. .....-.+++.+ +
T Consensus 206 yr~d~-~~~~~~~~~l~~pNGia~s--pDg---~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~--~~g~PDGi~vD~e~ 277 (355)
T 3sre_A 206 TYYSP-NDVRVVAEGFDFANGINIS--PDG---KYVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVDPVT 277 (355)
T ss_dssp EEECT-TCCEEEEEEESSEEEEEEC--TTS---SEEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEECTTT
T ss_pred EEEEC-CeEEEeecCCcccCcceEC--CCC---CEEEEEeCCCCeEEEEEECCCCcEecCEEEe--CCCCCceEEEeCCC
Confidence 55554 3322222334677999999 888 55554 45678999999853 332 23343 246678899999 5
Q ss_pred CCEEEEEcCC-CcEEEEE
Q psy10778 524 SQHLYASNTE-GLVIIWE 540 (556)
Q Consensus 524 g~~l~sgs~D-g~V~vwd 540 (556)
|.+.+++..+ +.|..|+
T Consensus 278 G~lwva~~~~g~~v~~~~ 295 (355)
T 3sre_A 278 GDLWVGCHPNGMRIFFYD 295 (355)
T ss_dssp CCEEEEEESCHHHHHSCC
T ss_pred CcEEEEecCCceEEEEEC
Confidence 9887766533 3444343
|
| >2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus} | Back alignment and structure |
|---|
Probab=95.91 E-value=1.5 Score=43.10 Aligned_cols=188 Identities=7% Similarity=-0.008 Sum_probs=101.7
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...+.++.+.+ +..+ .++.+|.| +....+...= +.+.....+...+..+.+.+++..++.+. +|.|.. .
T Consensus 79 ~~~~~~i~~~~-~~~~-~~g~~g~i--~~S~DgG~tW-----~~~~~~~~~~~~~~~i~~~~~~~~~~~~~-~g~v~~-S 147 (327)
T 2xbg_A 79 DYRFNSVSFQG-NEGW-IVGEPPIM--LHTTDGGQSW-----SQIPLDPKLPGSPRLIKALGNGSAEMITN-VGAIYR-T 147 (327)
T ss_dssp CCEEEEEEEET-TEEE-EEEETTEE--EEESSTTSSC-----EECCCCTTCSSCEEEEEEEETTEEEEEET-TCCEEE-E
T ss_pred CccEEEEEecC-CeEE-EEECCCeE--EEECCCCCCc-----eECccccCCCCCeEEEEEECCCCEEEEeC-CccEEE-E
Confidence 44688898876 3444 44556644 3332221110 00111112334567788777777666654 554432 2
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE-EEeCCcEEEE--eecCCCeEEEEEeeCCCCCc
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL-HTINAQLITS--LASELRITSVTFSNAPEGVS 480 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i-wdi~g~~i~~--~~~~~~i~~i~~s~~pdg~~ 480 (556)
...|+.-..+..+. ...+..+++.+++..++++. .+.+.. .|-.|..-.. ......+..+++. +++
T Consensus 148 ~DgG~tW~~~~~~~-~~~~~~~~~~~~~~~~~~g~------~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~--~~g-- 216 (327)
T 2xbg_A 148 KDSGKNWQALVQEA-IGVMRNLNRSPSGEYVAVSS------RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFT--PDG-- 216 (327)
T ss_dssp SSTTSSEEEEECSC-CCCEEEEEECTTSCEEEEET------TSSEEEEECTTCSSCEEEECCSSSCEEEEEEC--TTS--
T ss_pred cCCCCCCEEeecCC-CcceEEEEEcCCCcEEEEEC------CCcEEEEeCCCCCceeECCCCCCCccceeEEC--CCC--
Confidence 22343333332214 56789999999877776653 444433 3332332221 2345678888888 777
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCC---CCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTN---VALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
.++ .++.+|.+++.+...++.-..+... ....+.++++.+++..++++. +|.|
T Consensus 217 -~~~-~~~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i 272 (327)
T 2xbg_A 217 -RLW-MIVNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL 272 (327)
T ss_dssp -CEE-EEETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred -CEE-EEeCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence 555 4455788877643334433333211 224588999998887776655 6666
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.88 E-value=0.67 Score=46.23 Aligned_cols=204 Identities=9% Similarity=0.002 Sum_probs=107.7
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC---CCEE-EEEcCC----
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG---FSVA-VSSSED---- 396 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~---~~~l-~sgs~D---- 396 (556)
.....+++.|+|+++++ ..+|.|++++ .+. ..... . +............|+++|+ +..| ++-+..
T Consensus 31 ~~P~~ia~~pdG~l~V~-e~~g~I~~i~--~g~--~~~~~-~-~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~~~~~ 103 (352)
T 2ism_A 31 EVPWALAFLPDGGMLIA-ERPGRIRLFR--EGR--LSTYA-E-LSVYHRGESGLLGLALHPRFPQEPYVYAYRTVAEGGL 103 (352)
T ss_dssp SCEEEEEECTTSCEEEE-ETTTEEEEEE--TTE--EEEEE-E-CCCCCSTTCSEEEEEECTTTTTSCEEEEEEEECTTSS
T ss_pred CCceEEEEcCCCeEEEE-eCCCeEEEEE--CCC--ccEee-c-ceEeecCCCCceeEEECCCCCCCCEEEEEEecCCCCC
Confidence 34679999999985554 5669888887 221 11000 0 0011223456889999998 4444 443322
Q ss_pred -CcEEEEeCCCCe-----E-EEEeC--CCCCCCCeeEEEEeCCCCeEEEEeecC--------cCCCCeEEEEEeCCcE--
Q psy10778 397 -GTCLLWDINTIG-----Y-IREIP--CVDPNTPVSHVTMSETNGEIASVLQTT--------KTGGSILRLHTINAQL-- 457 (556)
Q Consensus 397 -g~I~iwdl~~~~-----~-v~~l~--~~h~~~~V~~l~~sp~~~~i~s~s~~~--------~~~d~~I~iwdi~g~~-- 457 (556)
+.|..++...+. . +..+. ... ......++|.|+|...++.+... ....+.|.-++.+|..
T Consensus 104 ~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~-~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~ 182 (352)
T 2ism_A 104 RNQVVRLRHLGERGVLDRVVLDGIPARPHG-LHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGEPAP 182 (352)
T ss_dssp EEEEEEEEECSSCEEEEEEEEEEECCCTTC-CCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSSBCT
T ss_pred ccEEEEEEeCCCCcCceEEEEEeCCCCCCC-CcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCCCCC
Confidence 678888876431 1 22243 101 23457899999996666543211 0022566666665521
Q ss_pred -----------EEEe-ecCCCeEEEEEeeCC-CCCcceEEEEEeCCCe--------EEEEeCCC----------------
Q psy10778 458 -----------ITSL-ASELRITSVTFSNAP-EGVSQNVIVTGHSDGT--------IQLWSGYK---------------- 500 (556)
Q Consensus 458 -----------i~~~-~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg~--------I~iwd~~~---------------- 500 (556)
...+ ........++|+ + +| .++++-...+. |.+.....
T Consensus 183 ~npf~~~~~~~~~i~a~G~rnp~g~a~d--~~~g---~l~v~d~g~~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~ 257 (352)
T 2ism_A 183 GNPFLGRRGARPEVYSLGHRNPQGLAWH--PKTG---ELFSSEHGPSGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRY 257 (352)
T ss_dssp TCTTTTCTTSCTTEEEECCSEECCCEEC--TTTC---CEEEEEECC------CCCEEEEECTTCBCCTTTCCSCCCCTTS
T ss_pred CCcccCCCCCCccEEEEcCCCcccEEEE--CCCC---CEEEEEcCCCCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCC
Confidence 0111 112345678888 6 56 55555433332 33322100
Q ss_pred CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
..++..+. +......++| .+|.++++....+.|...++...
T Consensus 258 ~~p~~~~~--~~~ap~G~~~-~~G~l~v~~~~~~~v~~v~~~~~ 298 (352)
T 2ism_A 258 RDPLYFWP--QGFPPGNLAF-FRGDLYVAGLRGQALLRLVLEGE 298 (352)
T ss_dssp CCCSEECT--TCCCEEEEEE-ETTEEEEEETTTTEEEEEEEEEE
T ss_pred cCCeEecC--CCCCCcceEE-ECCEEEEEECCCCEEEEEEECCC
Confidence 01222222 2245677787 46777777667778887777653
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=95.84 E-value=0.5 Score=45.83 Aligned_cols=149 Identities=5% Similarity=-0.045 Sum_probs=77.3
Q ss_pred CCCEEEEEcCC-----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE
Q psy10778 386 GFSVAVSSSED-----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460 (556)
Q Consensus 386 ~~~~l~sgs~D-----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~ 460 (556)
++++++.|+.+ ..+.+||+.+.+....-..+.+......+.+ ++..++.|+.........+.+||+....-..
T Consensus 121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~ 198 (308)
T 1zgk_A 121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 198 (308)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence 56777776643 4688999987654432221010112222222 4555566553221123568889987543333
Q ss_pred ee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEc
Q psy10778 461 LA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 461 ~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+. ....-.+++.. ++ .+++.|+.+ ..+.+||+.+.+-...-.. ...... +++. -++++++.|+
T Consensus 199 ~~~~p~~r~~~~~~~~---~~---~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~-~~~~-~~~~i~v~GG 270 (308)
T 1zgk_A 199 ITAMNTIRSGAGVCVL---HN---CIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSAL-GITV-HQGRIYVLGG 270 (308)
T ss_dssp CCCCSSCCBSCEEEEE---TT---EEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSC-EEEE-ETTEEEEECC
T ss_pred CCCCCCccccceEEEE---CC---EEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccce-EEEE-ECCEEEEEcC
Confidence 32 11222233333 34 677887754 4688999877654322111 111111 2222 2577777777
Q ss_pred CC-----CcEEEEEcCCC
Q psy10778 532 TE-----GLVIIWESSSH 544 (556)
Q Consensus 532 ~D-----g~V~vwdl~~~ 544 (556)
.+ ..+.+||+.+.
T Consensus 271 ~~~~~~~~~v~~yd~~~~ 288 (308)
T 1zgk_A 271 YDGHTFLDSVECYDPDTD 288 (308)
T ss_dssp BCSSCBCCEEEEEETTTT
T ss_pred cCCCcccceEEEEcCCCC
Confidence 54 35788988764
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=95.75 E-value=2.7 Score=46.36 Aligned_cols=190 Identities=12% Similarity=0.096 Sum_probs=109.5
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...|.++....+| .|..|+.+| +..||..+... . .. .......|.++.. .++. |..|+.+ -+..+|
T Consensus 62 ~~~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f----~--~~---~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~ 127 (758)
T 3ott_A 62 NTRIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRY----E--QP---ETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQ 127 (758)
T ss_dssp SSCEEEEEEETTT-EEEEEETTE-EEEEETTTTEE----C--CC---SCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEE
T ss_pred CceEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEE----E--Cc---ccCCCceEEEEEe-cCCc-EEEEcCC-cceeEe
Confidence 3468888877765 677777665 67787654311 0 00 0111235777654 3554 5555555 578889
Q ss_pred CCCCeEEEEe---CCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-------CCCeEEEEEe
Q psy10778 404 INTIGYIREI---PCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-------ELRITSVTFS 473 (556)
Q Consensus 404 l~~~~~v~~l---~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-------~~~i~~i~~s 473 (556)
..+++..... .... ...|.++....++...+ ++ .+ -|..++........+.. ...|.++...
T Consensus 128 ~~~~~~~~~~~~~~~l~-~~~i~~i~~d~~g~lWi-gt-----~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d 199 (758)
T 3ott_A 128 LQSRKLTSFDTRRNGLP-NNTIYSIIRTKDNQIYV-GT-----YN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLED 199 (758)
T ss_dssp TTTCCEEEECHHHHCCS-CSCEEEEEECTTCCEEE-EE-----TT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEE
T ss_pred CCCCeEEEeccCCCCcC-CCeEEEEEEcCCCCEEE-Ee-----CC-CHhhCccCCCceEEecCCCccccccceeEEEEEE
Confidence 8765543220 1101 35688888877766554 44 33 47778876444433321 1247788776
Q ss_pred eCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 474 NAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.++ ..|..|+. +.+..+|..+++...... .....|.++....+|.+.+. +.+ -+.+++..+.
T Consensus 200 --~~~---~~lWigt~-~Gl~~~~~~~~~~~~~~~-l~~~~i~~i~~d~~g~lWig-T~~-Gl~~~~~~~~ 261 (758)
T 3ott_A 200 --TTR---QCVWIGTE-GYLFQYFPSTGQIKQTEA-FHNNSIKSLALDGNGDLLAG-TDN-GLYVYHNDTT 261 (758)
T ss_dssp --TTT---TEEEEEEE-EEEEEEETTTTEEEEEEE-EEEEEEEEEEECTTCCEEEE-ETT-EEEEECCTTS
T ss_pred --CCC---CEEEEEEC-CCCeEEcCCCCeEEeccC-CCCCeEEEEEEcCCCCEEEE-eCC-ceeEEecCCC
Confidence 555 45555664 468888877665322111 11356888888888876654 444 4777876553
|
| >2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.93 Score=43.56 Aligned_cols=189 Identities=10% Similarity=-0.036 Sum_probs=93.2
Q ss_pred eEEeccCC-----CeEEEEeCCCCC---CcceEcCC-CCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcc
Q psy10778 295 MICWNECD-----NLIRLKMSKELP---ATPVIRPP-LGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~D-----g~I~lw~~~~~~---~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~ 360 (556)
+++.|+.+ +.+.++|..+.+ ....-... ....-.++.. +++.++.|+.++ .+.+||..+...
T Consensus 65 l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~~W-- 140 (301)
T 2vpj_A 65 IYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNIDQW-- 140 (301)
T ss_dssp EEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTTEE--
T ss_pred EEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCCeE--
Confidence 66666654 468889988766 43332111 1111222222 567777877543 466677554311
Q ss_pred cccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 361 KIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 361 ~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
+.+..+......-.++.+ ++++++.|+.+ ..+.++|+.+.+....-..+. ...-.+++.. ++..++
T Consensus 141 -----~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~-~r~~~~~~~~-~~~i~v 211 (301)
T 2vpj_A 141 -----SMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMAT-KRSGAGVALL-NDHIYV 211 (301)
T ss_dssp -----EEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEEE
T ss_pred -----EECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCc-ccccceEEEE-CCEEEE
Confidence 111111111111122222 56777777654 468899998876543322201 1111122222 455556
Q ss_pred EEeecCcCCCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCe
Q psy10778 436 SVLQTTKTGGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLA 502 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~ 502 (556)
.|+.........+.+||+....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+
T Consensus 212 ~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~v~~yd~~~~~ 280 (301)
T 2vpj_A 212 VGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGATVL---RG---RLYAIAGYDGNSLLSSIECYDPIIDS 280 (301)
T ss_dssp ECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT---EEEEECCBCSSSBEEEEEEEETTTTE
T ss_pred EeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeEEEE---CC---EEEEEcCcCCCcccccEEEEcCCCCe
Confidence 665322112457899999754333332 11122233332 45 677777755 357788876554
|
| >3ei3_A DNA damage-binding protein 1; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Homo sapiens} PDB: 3ei1_A* 3ei2_A* 3ei4_A* 4a0l_A* 3e0c_A* 3i7k_A* 3i7h_A* 3i7l_A* 3i7n_A* 3i7o_A* 3i7p_A* 3i89_A* 3i8c_A* 3i8e_A* 2b5l_A 2b5m_A 2hye_A* 4a11_A* 4a0k_C* 4a0a_A* ... | Back alignment and structure |
|---|
Probab=95.56 E-value=2.7 Score=48.85 Aligned_cols=215 Identities=10% Similarity=0.060 Sum_probs=117.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCC------CCEEEEEeC-CCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPD------CHTLWLGLT-SGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~d------g~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.++.++ .+.+.++.+..+.+.......-...|+|+++.+. ++++++|.. |++|+|+++.... .. .
T Consensus 525 ~vvva~-g~~l~~fel~~~~L~~~~~~~l~~evscl~i~~~~~~~~~s~~~aVg~~~d~tv~I~sL~~l~----~~---~ 596 (1158)
T 3ei3_A 525 QVVVAV-GRALYYLQIHPQELRQISHTEMEHEVACLDITPLGDSNGLSPLCAIGLWTDISARILKLPSFE----LL---H 596 (1158)
T ss_dssp EEEEEE-TTEEEEEEEETTEEEEEEEEECSSCEEEEECCCCSSSTTCCSEEEEEETTTTEEEEEETTTCC----EE---E
T ss_pred EEEEEE-CCEEEEEEeeCCceeeecccCCCCceEEEEeecCCCCcccccEEEEEECCCCEEEEEECCCCC----eE---E
Confidence 444443 5677777665443322222223567999998763 479999996 9999999986431 00 0
Q ss_pred CeEeeCCCccEEEEEEc--cCCCEEEEEcCCCcEEEEeC--CCCeEE--EE-eCCCCCCCCeeEEEEeCCCCeEEEEeec
Q psy10778 368 PTILLGHSACVTDLYLC--AGFSVAVSSSEDGTCLLWDI--NTIGYI--RE-IPCVDPNTPVSHVTMSETNGEIASVLQT 440 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s--~~~~~l~sgs~Dg~I~iwdl--~~~~~v--~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~ 440 (556)
...+.+ .....++.+. ....+|..|-.||.+.-+.+ .+|+.. ++ .-+ ..++.-..+...+..-+.++
T Consensus 597 ~~~L~~-~~~p~si~l~~~~~~~~L~igl~dG~l~~~~~d~~tg~l~d~r~~~LG---~~pv~L~~~~~~~~~~V~a~-- 670 (1158)
T 3ei3_A 597 KEMLGG-EIIPRSILMTTFESSHYLLCALGDGALFYFGLNIETGLLSDRKKVTLG---TQPTVLRTFRSLSTTNVFAC-- 670 (1158)
T ss_dssp EEECCS-SCCEEEEEEEEETTEEEEEEEETTSEEEEEEECTTTCCEEEEEEEECC---SSCCEEEEEESSSCEEEEEE--
T ss_pred EEECCC-CCCCcEEEEEEeCCCcEEEEEeCCCeEEEEEEcCCCCccccceeEEcC---CCceEEEEEeeCCceeEEEE--
Confidence 111211 1223333332 22347888999998866544 455443 22 233 45666666665554433333
Q ss_pred CcCCCCeEEEEEeCCcEEEEeecCCCe-EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC--eEEEEecCCCCCCeEE
Q psy10778 441 TKTGGSILRLHTINAQLITSLASELRI-TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL--AHLLTLNTNVALPVIA 517 (556)
Q Consensus 441 ~~~~d~~I~iwdi~g~~i~~~~~~~~i-~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~--~~~~~~~~~h~~~V~~ 517 (556)
.+....+|.-+++...+--.-..+ ....|+. +... +-++..+ ++.++|..+... -.++++. -...++.
T Consensus 671 ---s~rp~liy~~~~~l~~s~l~~~~v~~~~~F~s--e~~~-~g~v~~~-~~~LrI~~i~~~~~~~~~~ip--L~~Tprr 741 (1158)
T 3ei3_A 671 ---SDRPTVIYSSNHKLVFSNVNLKEVNYMCPLNS--DGYP-DSLALAN-NSTLTIGTIDEIQKLHIRTVP--LYESPRK 741 (1158)
T ss_dssp ---SSSCEEEEESSSSEEEEEBSSSCCCEEEEECC--SSST-TEEEEEC-SSCEEEEEECCSSSEEEEEEE--CSSEEEE
T ss_pred ---CCCCEEEEEcCCceEEeccChHHhceEeccCc--ccCC-CcEEEEc-CCceEEEEecccCCeeEEEEe--CCCCceE
Confidence 345555565566654332222233 3334542 1111 2244333 455888876433 2455565 3578999
Q ss_pred EEEecCCCEEEEEcC
Q psy10778 518 VTYSCDSQHLYASNT 532 (556)
Q Consensus 518 l~~s~dg~~l~sgs~ 532 (556)
++++|+.+.++.+..
T Consensus 742 i~y~~~~~~~~v~~~ 756 (1158)
T 3ei3_A 742 ICYQEVSQCFGVLSS 756 (1158)
T ss_dssp EEEEGGGTEEEEEEE
T ss_pred EEEcCCCCEEEEEEE
Confidence 999998887766553
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.56 E-value=2.5 Score=43.22 Aligned_cols=232 Identities=10% Similarity=0.066 Sum_probs=150.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++|--. ..++.++|+++...+..... ...|.-=.|-.+ +.|+..+ +..|+-|++.... .+++.+.-|
T Consensus 79 iiALra-g~~lQiFnle~K~klks~~~--~e~VvfWkWis~-~~l~lVT-~taVyHWsi~~~s--------~P~kvFdR~ 145 (494)
T 1bpo_A 79 VIALKA-GKTLQIFNIEMKSKMKAHTM--TDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--------QPVKMFDRH 145 (494)
T ss_dssp CEEEEE-TTEEEEEETTTTEEEEEEEC--SSCCCEEEEEET-TEEEEEC-SSEEEEEESSSSC--------CCEEEEECC
T ss_pred EEEEec-CCeEEEEchHHhhhhcceec--CCCceEEEecCC-CeEEEEc-CCeeEEecccCCC--------Cchhheecc
Confidence 444432 68999999998765555542 345666667654 5666555 4689999986531 344444444
Q ss_pred ----CccEEEEEEccCCCEEEEEc-------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCC--C-CeEEEEeec
Q psy10778 375 ----SACVTDLYLCAGFSVAVSSS-------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET--N-GEIASVLQT 440 (556)
Q Consensus 375 ----~~~V~~l~~s~~~~~l~sgs-------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~--~-~~i~s~s~~ 440 (556)
...|..-..+++.++++..+ -.|.+.+|+.++ +.-+.+++ | .+....+.+..+ . ..++.+...
T Consensus 146 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er-~~sQ~ieG-h-aa~F~~~~~~g~~~~~~lf~fa~r~ 222 (494)
T 1bpo_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEG-H-AASFAQFKMEGNAEESTLFCFAVRG 222 (494)
T ss_dssp GGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTT-CCEEEECC-S-EEEEEEEECTTCSSEEEEEEEEECS
T ss_pred hhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEeeccc-cccchhee-e-eeeeEEEecCCCCCCceEEEEEEec
Confidence 34677788888888766432 247888999885 45667777 6 333333322211 1 233333311
Q ss_pred CcCCCCeEEEEEeCCc---------EEEEe--e---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 441 TKTGGSILRLHTINAQ---------LITSL--A---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 441 ~~~~d~~I~iwdi~g~---------~i~~~--~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
. ..+.+++.++... ....+ . ..+...++..+ +.. .++..-+.-|.|++||+.++.++..
T Consensus 223 ~--~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs--~ky---gviyviTK~G~i~lyDleTgt~i~~ 295 (494)
T 1bpo_A 223 Q--AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS--EKH---DVVFLITKYGYIHLYDLETGTCIYM 295 (494)
T ss_dssp T--TCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEE--TTT---TEEEEEETTSEEEEEETTTCCEEEE
T ss_pred C--CCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEec--ccC---CEEEEEecCceEEEEecccceeeee
Confidence 1 3478999988411 11111 1 14566788888 544 5888889999999999999999988
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
-. -...+|-..+-+.+..-++.....|.|.--.+.+...+|-+
T Consensus 296 nr-Is~~~iF~t~~~~~~~Gi~~Vnr~GqVl~v~v~e~~ivpyi 338 (494)
T 1bpo_A 296 NR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYI 338 (494)
T ss_dssp EE-CCSSCEEEEEEETTTTEEEEEETTCEEEEEEECTTTHHHHH
T ss_pred ec-ccCCceEEecccCCCCcEEEEccCceEEEEEEccccchhhh
Confidence 77 34677777777766667777789999999888887766544
|
| >2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.93 Score=45.15 Aligned_cols=191 Identities=9% Similarity=-0.055 Sum_probs=97.4
Q ss_pred CCceEEEEEcCC---CCEEEEEeCC------CcEEEEEeeeccCcccccccCCCeEee---CCCccEEEEEEccCCCEEE
Q psy10778 324 GATIATATTAPD---CHTLWLGLTS------GNILVYEYELNASTNKIEFCKPPTILL---GHSACVTDLYLCAGFSVAV 391 (556)
Q Consensus 324 ~~~V~~i~~s~d---g~~l~tgs~D------g~I~vwd~~~~~~~~~~~~~~~~~~l~---~h~~~V~~l~~s~~~~~l~ 391 (556)
......++++|+ +..|+++... +.|..++...... .... ..+..+. +.......++|.|+|.+.+
T Consensus 74 ~~~p~gia~~pdf~~~g~lYv~~~~~~~~~~~~v~r~~~~~~~~-~~~~--~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv 150 (352)
T 2ism_A 74 ESGLLGLALHPRFPQEPYVYAYRTVAEGGLRNQVVRLRHLGERG-VLDR--VVLDGIPARPHGLHSGGRIAFGPDGMLYV 150 (352)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEECTTSSEEEEEEEEECSSCE-EEEE--EEEEEECCCTTCCCCCCCEEECTTSCEEE
T ss_pred CCCceeEEECCCCCCCCEEEEEEecCCCCCccEEEEEEeCCCCc-CceE--EEEEeCCCCCCCCcCCceEEECCCCCEEE
Confidence 456789999998 5566555432 5566666542200 0000 0111122 1112235899999998766
Q ss_pred EEcCC-------------CcEEEEeCCC--------------CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 392 SSSED-------------GTCLLWDINT--------------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 392 sgs~D-------------g~I~iwdl~~--------------~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
+.+.. |.|.-++... ...+... + + .....++|+|+.+.|.++... .
T Consensus 151 ~~G~~~~~~~~~d~~~~~g~I~ri~~dG~~p~~npf~~~~~~~~~i~a~-G-~--rnp~g~a~d~~~g~l~v~d~g---~ 223 (352)
T 2ism_A 151 TTGEVYERELAQDLASLGGKILRLTPEGEPAPGNPFLGRRGARPEVYSL-G-H--RNPQGLAWHPKTGELFSSEHG---P 223 (352)
T ss_dssp ECCCTTCGGGGGCTTCSSSEEEEECTTSSBCTTCTTTTCTTSCTTEEEE-C-C--SEECCCEECTTTCCEEEEEEC---C
T ss_pred EECCCCCCccccCCCCCceEEEEEcCCCCCCCCCcccCCCCCCccEEEE-c-C--CCcccEEEECCCCCEEEEEcC---C
Confidence 64321 4555555442 0011111 1 1 235678999954445444321 1
Q ss_pred CC-------eEEEEEeCC-----------------cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC
Q psy10778 445 GS-------ILRLHTINA-----------------QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK 500 (556)
Q Consensus 445 d~-------~I~iwdi~g-----------------~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~ 500 (556)
+. .|.+....+ .++..+........++|. +| .++++....+.|...++..
T Consensus 224 ~~~~~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~ap~G~~~~---~G---~l~v~~~~~~~v~~v~~~~ 297 (352)
T 2ism_A 224 SGEQGYGHDEVNLIVPGGNYGWPRVVGRGNDPRYRDPLYFWPQGFPPGNLAFF---RG---DLYVAGLRGQALLRLVLEG 297 (352)
T ss_dssp ------CCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCEEEEEEE---TT---EEEEEETTTTEEEEEEEEE
T ss_pred CCCCCCCCeEEEEeccCCcCCCCcccCCCCCCCCcCCeEecCCCCCCcceEEE---CC---EEEEEECCCCEEEEEEECC
Confidence 11 233322111 111222223356677775 46 6777766777888777643
Q ss_pred Ce----E--EEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 501 LA----H--LLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 501 ~~----~--~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
.. . ...+. .....++.+++.|||.++++..
T Consensus 298 ~~~~~~~~~~~~~~-~~~~rp~~v~~~pdG~lyv~~~ 333 (352)
T 2ism_A 298 ERGRWRVLRVETAL-SGFGRLREVQVGPDGALYVTTS 333 (352)
T ss_dssp ETTEEEEEEEEEEE-ESSCCEEEEEECTTSCEEEEEC
T ss_pred CCcceeecchheec-ccCCCeeEEEECCCCcEEEEEe
Confidence 32 1 12221 1236789999999998777654
|
| >1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1 | Back alignment and structure |
|---|
Probab=95.19 E-value=3.2 Score=42.36 Aligned_cols=225 Identities=6% Similarity=0.054 Sum_probs=131.9
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC--ccE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS--ACV 378 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~--~~V 378 (556)
.+.+|.+.|+.++.........-. +.-.+|..+.+|.-. ..++.|+|+++. ..+..|. ..|
T Consensus 46 ~~~~vvIiDl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnle~K------------~klks~~~~e~V 108 (494)
T 1bpo_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMK------------SKMKAHTMTDDV 108 (494)
T ss_dssp TCCEEEEEETTSTTSCEEEECCCS----EEEECSSSSCEEEEE-TTEEEEEETTTT------------EEEEEEECSSCC
T ss_pred CCCeEEEEECCCCCcceecccccc----eeeeCCCCcEEEEec-CCeEEEEchHHh------------hhhcceecCCCc
Confidence 445888889887554433222222 334568777777765 689999999875 3333332 345
Q ss_pred EEEEEccCCCEEEEEcCCCcEEEEeCCC-CeEEEEeCCCCC---CCCeeEEEEeCCCCeEEEEeecC--cCCCCeEEEEE
Q psy10778 379 TDLYLCAGFSVAVSSSEDGTCLLWDINT-IGYIREIPCVDP---NTPVSHVTMSETNGEIASVLQTT--KTGGSILRLHT 452 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-~~~v~~l~~~h~---~~~V~~l~~sp~~~~i~s~s~~~--~~~d~~I~iwd 452 (556)
.-=.|-.+.. |+-.+ +..|.-|++.. ..+++.+.. |. ...|..-..+++.++++..+-.. +.-.|.+.+|+
T Consensus 109 vfWkWis~~~-l~lVT-~taVyHWsi~~~s~P~kvFdR-~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS 185 (494)
T 1bpo_A 109 TFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYS 185 (494)
T ss_dssp CEEEEEETTE-EEEEC-SSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEE
T ss_pred eEEEecCCCe-EEEEc-CCeeEEecccCCCCchhheec-chhcccceEEEEEECCCCCeEEEEeecccCCcccceEEEee
Confidence 5555654443 33332 56799999964 245555554 41 35677778889999887665321 11346788888
Q ss_pred eCCcEEEEeecC-CCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCC--------eEEEEecC---CCCCCeEE
Q psy10778 453 INAQLITSLASE-LRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKL--------AHLLTLNT---NVALPVIA 517 (556)
Q Consensus 453 i~g~~i~~~~~~-~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~--------~~~~~~~~---~h~~~V~~ 517 (556)
.+.+.-+.++.. .....+... .+.....+++.+.. .+++++.++... +....+.. ....-..+
T Consensus 186 ~er~~sQ~ieGhaa~F~~~~~~--g~~~~~~lf~fa~r~~~g~kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPva 263 (494)
T 1bpo_A 186 VDRKVSQPIEGHAASFAQFKME--GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVA 263 (494)
T ss_dssp STTCCEEEECCSEEEEEEEECT--TCSSEEEEEEEEECSTTCCEEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEE
T ss_pred ccccccchheeeeeeeEEEecC--CCCCCceEEEEEEecCCCcEEEEEEcCCCccCCCCccceeeeeeCCcccccCceeE
Confidence 875444444321 111112111 01111133444433 278999887432 11112111 11344668
Q ss_pred EEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 518 VTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 518 l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
+..|+....++..+.-|-|+++|+.++..+
T Consensus 264 mqvs~kygviyviTK~G~i~lyDleTgt~i 293 (494)
T 1bpo_A 264 MQISEKHDVVFLITKYGYIHLYDLETGTCI 293 (494)
T ss_dssp EEEETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred EEecccCCEEEEEecCceEEEEecccceee
Confidence 999999999999999999999999997654
|
| >3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.94 E-value=1.8 Score=41.60 Aligned_cols=189 Identities=12% Similarity=0.010 Sum_probs=93.3
Q ss_pred eEEeccCC----CeEEEEeCCCCCCcceEcCCC-CCceEEEEEcCCCCEEEEEeCC------CcEEEEEeeeccCccccc
Q psy10778 295 MICWNECD----NLIRLKMSKELPATPVIRPPL-GATIATATTAPDCHTLWLGLTS------GNILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~D----g~I~lw~~~~~~~~~~~~~~h-~~~V~~i~~s~dg~~l~tgs~D------g~I~vwd~~~~~~~~~~~ 363 (556)
+++.|+.+ ..+.++|..+.+....-.... ...-.++.+ +++.++.|+.+ ..+.+||..+.......
T Consensus 58 lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~- 134 (306)
T 3ii7_A 58 VYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKP- 134 (306)
T ss_dssp EEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEEC-
T ss_pred EEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCC-
Confidence 56666644 678888887765433322111 111222222 66778888765 35777776654111000
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcC---------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeE
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSE---------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEI 434 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~---------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i 434 (556)
........| .++. .++++++.|+. -..+.+||+.+.+....-..+. ...-.+++.. ++..+
T Consensus 135 --~~p~~r~~~----~~~~--~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~i~ 204 (306)
T 3ii7_A 135 --SMLTQRCSH----GMVE--ANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIE-ARKNHGLVFV-KDKIF 204 (306)
T ss_dssp --CCSSCCBSC----EEEE--ETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEE
T ss_pred --CCcCCccee----EEEE--ECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccc-hhhcceEEEE-CCEEE
Confidence 000111122 1222 25666676653 3458899998875443322201 1111222222 45566
Q ss_pred EEEeecCcCCCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCe
Q psy10778 435 ASVLQTTKTGGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLA 502 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~ 502 (556)
+.|+.........+.+||+....-..+. ....-.+++.. ++ .+++.|+.+ ..+.+||..+.+
T Consensus 205 v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~~~~yd~~~~~ 274 (306)
T 3ii7_A 205 AVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV---GS---IVYVLAGFQGVGRLGHILEYNTETDK 274 (306)
T ss_dssp EECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE---TT---EEEEEECBCSSSBCCEEEEEETTTTE
T ss_pred EEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE---CC---EEEEEeCcCCCeeeeeEEEEcCCCCe
Confidence 6655322111356888998754333332 11111223332 35 788888754 568889987654
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.92 E-value=2.2 Score=42.41 Aligned_cols=204 Identities=8% Similarity=-0.017 Sum_probs=110.2
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC----CCEEEEEcC---C-
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG----FSVAVSSSE---D- 396 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~~~l~sgs~---D- 396 (556)
.....++|.|+|+++ ++..+|.|++++. .+ . .... . +............|+++|+ +.+.++-+. +
T Consensus 29 ~~P~~ia~~pdG~l~-V~e~~g~I~~~d~-~G--~-~~~~-~-~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~~~~~ 101 (354)
T 3a9g_A 29 EVPWSIAPLGGGRYL-VTERPGRLVLISP-SG--K-KLVA-S-FDVANVGEAGLLGLALHPEFPKKSWVYLYASYFAEGG 101 (354)
T ss_dssp SCEEEEEEEETTEEE-EEETTTEEEEECS-SC--E-EEEE-E-CCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEECGGG
T ss_pred CCCeEEEEcCCCeEE-EEeCCCEEEEEeC-CC--c-eEee-c-cceeecCCCceeeEEeCCCCCcCCEEEEEEeccCCCC
Confidence 346789999998754 4566698888862 22 1 1110 0 0011222356889999997 444444332 3
Q ss_pred ---CcEEEEeCCCC-------eEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEeecC--------cCCCCeEEEEEeCCc-
Q psy10778 397 ---GTCLLWDINTI-------GYI-REIPCVDPNTPVSHVTMSETNGEIASVLQTT--------KTGGSILRLHTINAQ- 456 (556)
Q Consensus 397 ---g~I~iwdl~~~-------~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~--------~~~d~~I~iwdi~g~- 456 (556)
+.|..++.... +.+ ..+.. ........|+|.|+|...++.+... ....+.|.-++.+|+
T Consensus 102 ~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~-~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~ 180 (354)
T 3a9g_A 102 HIRNRVIRGRLDGSTFKLKEVKTLIDGIPG-AYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEEGRP 180 (354)
T ss_dssp CEEEEEEEEEECSSSCCEEEEEEEEEEEEC-CSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTTSCC
T ss_pred CcceEEEEEEECCCCcCcCccEEEEEcCCC-CCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCCCCC
Confidence 56777876643 111 22322 1023457799999997666644211 012356666666654
Q ss_pred ---------EEEEeecCCCeEEEEEeeCC-CCCcceEEEEEeCCC---eEEEEeCC--------CC--------eEEEEe
Q psy10778 457 ---------LITSLASELRITSVTFSNAP-EGVSQNVIVTGHSDG---TIQLWSGY--------KL--------AHLLTL 507 (556)
Q Consensus 457 ---------~i~~~~~~~~i~~i~~s~~p-dg~~~~~l~tg~~dg---~I~iwd~~--------~~--------~~~~~~ 507 (556)
.+... .......++|+ + +| +++++-...+ .|.+...- .+ .++..+
T Consensus 181 p~~npf~~~~i~a~-G~rnp~Gla~d--~~~g---~l~v~d~g~~~~dei~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~ 254 (354)
T 3a9g_A 181 PADNPFPNSPIWSY-GHRNPQGIDWH--RASG---VMVATEHGPVGHDEVNIILKGGNYGWPLATGKAGRGEFVDPVIDT 254 (354)
T ss_dssp CTTSSSTTCCEEEE-CCSCCCEEEEC--TTTC---CEEEEECCSSSCCEEEEECTTCBCCTTTCCSCCCCTTSCCCSEEC
T ss_pred CCCCCCCCCcEEEE-ccCCcceEEEe--CCCC---CEEEEecCCCCCcEEEEecCCCcCCCCcccCCCCCCCCcCCEeec
Confidence 12222 22345688999 7 56 5555433222 23332210 00 122333
Q ss_pred cCCCCCCeEEEEEe-------cCCCEEEEEcCCCcEEEEEcCC
Q psy10778 508 NTNVALPVIAVTYS-------CDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 508 ~~~h~~~V~~l~~s-------~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
. ........++|. .+|.++++.-..+.|...++..
T Consensus 255 ~-~~~~ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~ 296 (354)
T 3a9g_A 255 G-SETWAPSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGD 296 (354)
T ss_dssp T-TCCCCEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECG
T ss_pred C-CCCcCCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECC
Confidence 1 123467888883 5777777777778888888875
|
| >3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A | Back alignment and structure |
|---|
Probab=94.68 E-value=0.7 Score=47.07 Aligned_cols=113 Identities=12% Similarity=0.117 Sum_probs=78.3
Q ss_pred EEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecC-----CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 425 VTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASE-----LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 425 l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~-----~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
...+.++..++.+ .++.||.-++. +...+.++.+ ..+..+..+ |+| ++||..+. ..|.|-.+
T Consensus 26 ~~~~~n~t~i~~a------~~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlS--psG---~lLAl~g~-~~V~Vv~L 93 (452)
T 3pbp_A 26 IFSSQNGTRIVFI------QDNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISS--TSG---DLLCLFND-NEIFVMEV 93 (452)
T ss_dssp EEEETTTTEEEEE------ETTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEEC--TTS---SEEEEECS-SEEEEEEC
T ss_pred EEEEcCCCEEEEE------ECCEEEEEECCCCCcceEEecCcccccCceeEEEEC--CCC---CEEEEecC-CeEEEEEe
Confidence 3445567777776 47888888886 4434444333 257889999 999 78888764 57888877
Q ss_pred CCCe------------EEEEecCC-----CCCCeEEEEEecC---CCEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 499 YKLA------------HLLTLNTN-----VALPVIAVTYSCD---SQHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 499 ~~~~------------~~~~~~~~-----h~~~V~~l~~s~d---g~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
..+. ..+.+..+ ...+|..+.|+|- +..|++-.+|+.|++||+......|.
T Consensus 94 P~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~ 164 (452)
T 3pbp_A 94 PWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPI 164 (452)
T ss_dssp CTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCE
T ss_pred cCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCc
Confidence 5221 22333321 3578999999995 47899999999999999987544443
|
| >2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.64 E-value=2.5 Score=40.53 Aligned_cols=190 Identities=13% Similarity=0.004 Sum_probs=91.7
Q ss_pred eEEeccCC-----CeEEEEeCCCCCCcceEcCCC-CCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCccccc
Q psy10778 295 MICWNECD-----NLIRLKMSKELPATPVIRPPL-GATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKIE 363 (556)
Q Consensus 295 ~l~~gs~D-----g~I~lw~~~~~~~~~~~~~~h-~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~~ 363 (556)
+++.|+.+ ..+.++|..+.+....-.... ...-.++.+ +++.++.|+.++ .+.+||..+....
T Consensus 64 lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~---- 137 (302)
T 2xn4_A 64 VFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWF---- 137 (302)
T ss_dssp EEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEE----
T ss_pred EEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEe----
Confidence 66666644 357788887664333221111 111122222 567888887654 3556665433110
Q ss_pred ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-------CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEE
Q psy10778 364 FCKPPTILLGHSACVTDLYLCAGFSVAVSSSED-------GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 364 ~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-------g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s 436 (556)
.+..+........++. .++++++.|+.+ ..+.+||+.+.+....-..+. ...-.+++.. ++..++.
T Consensus 138 ---~~~~~p~~r~~~~~~~--~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~iyv~ 210 (302)
T 2xn4_A 138 ---HVAPMNTRRSSVGVGV--VGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMST-RRSGAGVGVL-NNLLYAV 210 (302)
T ss_dssp ---EECCCSSCCBSCEEEE--ETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEEEE
T ss_pred ---ecCCCCCcccCceEEE--ECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCcc-ccccccEEEE-CCEEEEE
Confidence 0011111111112222 256677776542 458899998875443322201 1111222222 4556666
Q ss_pred EeecCcCCCCeEEEEEeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCC-----eEEEEeCCCCeE
Q psy10778 437 VLQTTKTGGSILRLHTINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDG-----TIQLWSGYKLAH 503 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg-----~I~iwd~~~~~~ 503 (556)
|+.........+.+||+....-..+. ....-.+++.. ++ ++++.|+.++ .+.+||..+.+-
T Consensus 211 GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~v~~yd~~~~~W 279 (302)
T 2xn4_A 211 GGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGVCAV---NG---LLYVVGGDDGSCNLASVEYYNPTTDKW 279 (302)
T ss_dssp CCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE---TT---EEEEECCBCSSSBCCCEEEEETTTTEE
T ss_pred CCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeEEEE---CC---EEEEECCcCCCcccccEEEEcCCCCeE
Confidence 65322112357889998754333332 11112223333 45 6788877653 488888876653
|
| >3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A* | Back alignment and structure |
|---|
Probab=94.39 E-value=4.5 Score=40.17 Aligned_cols=198 Identities=10% Similarity=0.026 Sum_probs=101.8
Q ss_pred CCceEEEEEcCC---CCEEEEEeC----C----CcEEEEEeeeccCcccccccCC-CeEee-CCCccEEEEEEccCCCEE
Q psy10778 324 GATIATATTAPD---CHTLWLGLT----S----GNILVYEYELNASTNKIEFCKP-PTILL-GHSACVTDLYLCAGFSVA 390 (556)
Q Consensus 324 ~~~V~~i~~s~d---g~~l~tgs~----D----g~I~vwd~~~~~~~~~~~~~~~-~~~l~-~h~~~V~~l~~s~~~~~l 390 (556)
......++++|+ +..|+++.. + +.|..|+..... ......+. +..+. +.......|+|.|+|.+.
T Consensus 72 ~~g~~gia~~pdf~~~g~lyv~~~~~~~~~~~~~~v~r~~~~~~~--~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Ly 149 (354)
T 3a9g_A 72 EAGLLGLALHPEFPKKSWVYLYASYFAEGGHIRNRVIRGRLDGST--FKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLY 149 (354)
T ss_dssp TCSEEEEEECTTTTTSCEEEEEEEEECGGGCEEEEEEEEEECSSS--CCEEEEEEEEEEEECCSSCCCCCEEECTTSCEE
T ss_pred CCceeeEEeCCCCCcCCEEEEEEeccCCCCCcceEEEEEEECCCC--cCcCccEEEEEcCCCCCCcCCceEEECCCCcEE
Confidence 356889999997 555555443 2 455555554320 01100011 11122 111234579999999877
Q ss_pred EEEcC-------------CCcEEEEeCCCC---------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 391 VSSSE-------------DGTCLLWDINTI---------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 391 ~sgs~-------------Dg~I~iwdl~~~---------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
++.+. .|.|.-.+.... ..+... + + .....++|+|+.+.|.++.... .....|
T Consensus 150 vt~G~~~~~~~~~d~~~~~G~I~ri~~dG~~p~~npf~~~~i~a~-G-~--rnp~Gla~d~~~g~l~v~d~g~-~~~dei 224 (354)
T 3a9g_A 150 ITTGDAADPRLAQDLSSLAGKILRVDEEGRPPADNPFPNSPIWSY-G-H--RNPQGIDWHRASGVMVATEHGP-VGHDEV 224 (354)
T ss_dssp EECCCTTCGGGGTCTTCCSSEEEEECTTSCCCTTSSSTTCCEEEE-C-C--SCCCEEEECTTTCCEEEEECCS-SSCCEE
T ss_pred EEECCCCCCccccCCCCCCeEEEEEcCCCCCCCCCCCCCCcEEEE-c-c--CCcceEEEeCCCCCEEEEecCC-CCCcEE
Confidence 76432 144555554321 012111 2 1 2356899999544455443110 011234
Q ss_pred EEEEeCC-----------------cEEEEe-ecCCCeEEEEEeeC-----CCCCcceEEEEEeCCCeEEEEeCCCC-eEE
Q psy10778 449 RLHTINA-----------------QLITSL-ASELRITSVTFSNA-----PEGVSQNVIVTGHSDGTIQLWSGYKL-AHL 504 (556)
Q Consensus 449 ~iwdi~g-----------------~~i~~~-~~~~~i~~i~~s~~-----pdg~~~~~l~tg~~dg~I~iwd~~~~-~~~ 504 (556)
.+...-+ .++..+ ........++|... .+| .++++....+.|...++... +..
T Consensus 225 ~~i~~G~nyGwp~~~g~~~~~~~~~p~~~~~~~~~ap~G~~~y~g~~fp~~~G---~l~v~~~~~~~v~~~~~~~~g~~~ 301 (354)
T 3a9g_A 225 NIILKGGNYGWPLATGKAGRGEFVDPVIDTGSETWAPSGASFVHGDMFPGLRG---WLLIACLRGSMLAAVNFGDNMEVR 301 (354)
T ss_dssp EEECTTCBCCTTTCCSCCCCTTSCCCSEECTTCCCCEEEEEECCSSSCGGGTT---EEEEEETTTTEEEEEEECGGGCEE
T ss_pred EEecCCCcCCCCcccCCCCCCCCcCCEeecCCCCcCCcceEEECCCCCcccCC---cEEEEEcCCCEEEEEEECCCCccc
Confidence 3332111 122222 22346778888421 355 67777777788888887643 332
Q ss_pred --EEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 505 --LTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 505 --~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
..+..+....+..+++.|||.+.++..
T Consensus 302 ~~~~~~~~~~~rp~~v~~~pDG~lyv~~~ 330 (354)
T 3a9g_A 302 KISTFFKNVFGRLRDVVIDDDGGILISTS 330 (354)
T ss_dssp EEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred ceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence 233212246799999999998777664
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=94.33 E-value=4.6 Score=40.04 Aligned_cols=70 Identities=11% Similarity=0.077 Sum_probs=45.0
Q ss_pred CCCeEEEEEeeC-----CCCCcceEEEEEeCCCeEEEEeCCCCeEEEE--ecCCCCCCeEEEEEecCCCEEEEEc-CCCc
Q psy10778 464 ELRITSVTFSNA-----PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT--LNTNVALPVIAVTYSCDSQHLYASN-TEGL 535 (556)
Q Consensus 464 ~~~i~~i~~s~~-----pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~--~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~ 535 (556)
......++|... -+| .++++....+.|...++..++.... +.......+..+++.|||.++++.. .+|.
T Consensus 270 ~~ap~G~~~y~g~~fp~~~g---~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td~~~g~ 346 (353)
T 2g8s_A 270 SPAVSGMAFYNSDKFPQWQQ---KLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTDESSGE 346 (353)
T ss_dssp CCCEEEEEEECCSSSGGGTT---EEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEECSTTEE
T ss_pred CcCcceeEEECCccCcccCC---cEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEeCCCCE
Confidence 346777888621 135 6777777888888888766554332 2112235799999999998666543 3454
Q ss_pred E
Q psy10778 536 V 536 (556)
Q Consensus 536 V 536 (556)
|
T Consensus 347 I 347 (353)
T 2g8s_A 347 L 347 (353)
T ss_dssp E
T ss_pred E
Confidence 4
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.32 E-value=0.41 Score=47.52 Aligned_cols=116 Identities=7% Similarity=-0.049 Sum_probs=64.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEE--cCCCCEEEEE--eCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATT--APDCHTLWLG--LTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~--s~dg~~l~tg--s~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
++..++.||.|.-.|.++|+..-.+......++....- .+.+..++.+ +.||.+..++...+... ... .+..
T Consensus 12 ~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~-~~~---~~~~ 87 (339)
T 2be1_A 12 ILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLIEIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQK-LPL---SIRQ 87 (339)
T ss_dssp EEEEEETTSCEEEEETTTTEEEEEECGGGSCCSEECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEE-EEE---EHHH
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEecCCccCCcEEecCCccccCCcEEEEEECCCCEEEEEECCCCcEE-eee---cccc
Confidence 78888999999999998887766665331122222110 0112233333 56788877775443100 000 0000
Q ss_pred eeCCCccEEE---EEE-----ccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC
Q psy10778 371 LLGHSACVTD---LYL-----CAGFSVAVSSSEDGTCLLWDINTIGYIREIPC 415 (556)
Q Consensus 371 l~~h~~~V~~---l~~-----s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~ 415 (556)
+. ..+++.. ..+ ...+..+++|+.+|.+...|+.+|+.+..+..
T Consensus 88 lv-~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 88 LV-STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp HH-TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred ce-eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 00 1122221 000 01356889999999999999999999998875
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=94.21 E-value=1.4 Score=43.62 Aligned_cols=140 Identities=10% Similarity=-0.067 Sum_probs=65.2
Q ss_pred CcEEEEeCCCCeEEEEeCCCCCCCCe-eEEEEeCCCCeEEEEeecCc-CCCCeEEEEEe--CCcEEEEee---cCC-C-e
Q psy10778 397 GTCLLWDINTIGYIREIPCVDPNTPV-SHVTMSETNGEIASVLQTTK-TGGSILRLHTI--NAQLITSLA---SEL-R-I 467 (556)
Q Consensus 397 g~I~iwdl~~~~~v~~l~~~h~~~~V-~~l~~sp~~~~i~s~s~~~~-~~d~~I~iwdi--~g~~i~~~~---~~~-~-i 467 (556)
..+.++|+.+.+....-..+. .... .+++.. ++..++.|+.... .....+..||+ ....-..+. ... . -
T Consensus 168 ~~v~~yd~~~~~W~~~~~~p~-~~~~~~~~~~~-~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~ 245 (357)
T 2uvk_A 168 KFLLSFDPSTQQWSYAGESPW-YGTAGAAVVNK-GDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAG 245 (357)
T ss_dssp CEEEEEETTTTEEEEEEECSS-CCCBSCEEEEE-TTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBS
T ss_pred ccEEEEeCCCCcEEECCCCCC-CCcccccEEEE-CCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCccccc
Confidence 578899998875443322201 1112 233333 4455555542110 01345777876 333222221 111 1 1
Q ss_pred EEEEEeeCCCCCcceEEEEEeCC----------------------CeEEEEeCCCCe--EEEEecCCCCCCeEEEEEecC
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSD----------------------GTIQLWSGYKLA--HLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~d----------------------g~I~iwd~~~~~--~~~~~~~~h~~~V~~l~~s~d 523 (556)
.+++.. ++ .+++.|+.+ ..+.+||..+.+ .+..+... ...-. +...+
T Consensus 246 ~~~~~~---~~---~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~--~~~~~ 316 (357)
T 2uvk_A 246 GFAGIS---ND---SLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGV--SLPWN 316 (357)
T ss_dssp CEEEEE---TT---EEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBSSE--EEEET
T ss_pred ceEEEE---CC---EEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-cccce--eEEeC
Confidence 223333 45 677777632 247788886543 44444321 12222 23346
Q ss_pred CCEEEEEcCCC------cEEEEEcCCCCCc
Q psy10778 524 SQHLYASNTEG------LVIIWESSSHNRT 547 (556)
Q Consensus 524 g~~l~sgs~Dg------~V~vwdl~~~~~~ 547 (556)
+++++.|+.++ .|.++++++++.+
T Consensus 317 ~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~ 346 (357)
T 2uvk_A 317 NSLLIIGGETAGGKAVTDSVLITVKDNKVT 346 (357)
T ss_dssp TEEEEEEEECGGGCEEEEEEEEEC-CCSCE
T ss_pred CEEEEEeeeCCCCCEeeeEEEEEEcCcEeE
Confidence 78888888653 3556688776554
|
| >3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A | Back alignment and structure |
|---|
Probab=93.74 E-value=9.8 Score=41.79 Aligned_cols=191 Identities=11% Similarity=0.079 Sum_probs=110.0
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...|+++.-..+| +|..|+.+| +..||-..- ... .... ......|.++....++. |..|+.+| +..+|
T Consensus 21 ~n~V~~I~qD~~G-~lWigT~~G-L~ryDG~~~----~~~--~~~~--~~~~~~i~~i~~d~~g~-lWigT~~G-l~~yd 88 (758)
T 3ott_A 21 ASVVSCFLQDSEG-LIWIGSNKG-LFSYDGYST----QQH--FTYG--ENNNTRIYCGVIIDNTY-LYMGTDNG-ILVYN 88 (758)
T ss_dssp CCCEEEEEECTTS-CEEEEESSC-EEEECSSCE----EEC--SCTT--STTSSCEEEEEEETTTE-EEEEETTE-EEEEE
T ss_pred cceEEEEEECCCC-CEEEEECCC-ccccCCCce----EEE--EccC--CCCCceEEEEEEcCCCc-EEEEeCCC-eEEEe
Confidence 4568999888876 566777777 444552211 000 0000 11235688888777664 55556666 78999
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee------cCCCeEEEEEeeCCC
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA------SELRITSVTFSNAPE 477 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~------~~~~i~~i~~s~~pd 477 (556)
..+.+....... . ...|.++... + +.|..++ .+ -|..+|.....+..+. ....|.++... .+
T Consensus 89 ~~~~~f~~~~~~-~-~~~i~~i~~~-~-g~lWigt-----~~-Gl~~~~~~~~~~~~~~~~~~~l~~~~i~~i~~d--~~ 156 (758)
T 3ott_A 89 YRADRYEQPETD-F-PTDVRTMALQ-G-DTLWLGA-----LN-GLYTYQLQSRKLTSFDTRRNGLPNNTIYSIIRT--KD 156 (758)
T ss_dssp TTTTEECCCSCC-C-CSCEEEEEEE-T-TEEEEEE-----TT-EEEEEETTTCCEEEECHHHHCCSCSCEEEEEEC--TT
T ss_pred CCCCEEECcccC-C-CceEEEEEec-C-CcEEEEc-----CC-cceeEeCCCCeEEEeccCCCCcCCCeEEEEEEc--CC
Confidence 887654331111 1 2357776543 3 4566665 44 6788888644344331 13467777776 66
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC----CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN----VALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~----h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
| . |..|+.+ .|..++..+++........ ....|.++...+++..|..|+. +-|..++..++
T Consensus 157 g---~-lWigt~~-Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~~~~~~~~ 221 (758)
T 3ott_A 157 N---Q-IYVGTYN-GLCRYIPSNGKFEGIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLFQYFPSTG 221 (758)
T ss_dssp C---C-EEEEETT-EEEEEETTTTEEEEECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEEEEETTTT
T ss_pred C---C-EEEEeCC-CHhhCccCCCceEEecCCCccccccceeEEEEEECCCCEEEEEEC-CCCeEEcCCCC
Confidence 6 4 4445554 5778887666533221111 1234888888887776666664 45888887664
|
| >1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A | Back alignment and structure |
|---|
Probab=93.60 E-value=3.5 Score=39.63 Aligned_cols=181 Identities=13% Similarity=0.024 Sum_probs=86.5
Q ss_pred CeEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEEEEEeCCC-----cEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 303 NLIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTLWLGLTSG-----NILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l~tgs~Dg-----~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
+.+.++|..+.+....-... ....-.++.+ +++.++.|+.++ .+.+||..+.... .+..+.....
T Consensus 90 ~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~-------~~~~~p~~r~ 160 (308)
T 1zgk_A 90 SALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERDEWH-------LVAPMLTRRI 160 (308)
T ss_dssp CCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTTEEE-------ECCCCSSCCB
T ss_pred ceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCCeEe-------ECCCCCcccc
Confidence 45777887765432221111 1111222222 667777777543 4667776543111 0011111111
Q ss_pred cEEEEEEccCCCEEEEEcCC-----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 377 CVTDLYLCAGFSVAVSSSED-----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~D-----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.-.++.+ ++.+++.|+.+ ..+.++|+.+.+....-..+. ...-.+++.. ++..++.|+.........+.+|
T Consensus 161 ~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~v~~y 236 (308)
T 1zgk_A 161 GVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNT-IRSGAGVCVL-HNCIYAAGGYDGQDQLNSVERY 236 (308)
T ss_dssp SCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE-TTEEEEECCBCSSSBCCCEEEE
T ss_pred ceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCC-ccccceEEEE-CCEEEEEeCCCCCCccceEEEE
Confidence 1122222 56777777654 468899998765433211101 1111222222 4556666653221123678899
Q ss_pred EeCCcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCe
Q psy10778 452 TINAQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLA 502 (556)
Q Consensus 452 di~g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~ 502 (556)
|+....-..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+
T Consensus 237 d~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~v~~yd~~~~~ 289 (308)
T 1zgk_A 237 DVETETWTFVAPMKHRRSALGITVH---QG---RIYVLGGYDGHTFLDSVECYDPDTDT 289 (308)
T ss_dssp ETTTTEEEECCCCSSCCBSCEEEEE---TT---EEEEECCBCSSCBCCEEEEEETTTTE
T ss_pred eCCCCcEEECCCCCCCccceEEEEE---CC---EEEEEcCcCCCcccceEEEEcCCCCE
Confidence 98754433332 11122233333 34 677777744 357788876654
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=92.64 E-value=3.1 Score=45.54 Aligned_cols=197 Identities=8% Similarity=-0.006 Sum_probs=100.1
Q ss_pred eEEeccCC----CeEEEEeCCCCCCcceE-c------CCCCCceEEEEEcCCCCEEEEEeCCC------cEEEEEeeecc
Q psy10778 295 MICWNECD----NLIRLKMSKELPATPVI-R------PPLGATIATATTAPDCHTLWLGLTSG------NILVYEYELNA 357 (556)
Q Consensus 295 ~l~~gs~D----g~I~lw~~~~~~~~~~~-~------~~h~~~V~~i~~s~dg~~l~tgs~Dg------~I~vwd~~~~~ 357 (556)
+++.|+.+ +.+.++|..+++....- . ......-.++.+..+++.++.|+.++ .+.+||..+..
T Consensus 400 iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~ 479 (695)
T 2zwa_A 400 VFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTRE 479 (695)
T ss_dssp EEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTE
T ss_pred EEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCc
Confidence 66677653 46778888776554443 1 01111222333322677888887543 46667765431
Q ss_pred CcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC--cEEEEeCCCCeEEEEeC---CCCCCCCeeEEEEeCC-C
Q psy10778 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG--TCLLWDINTIGYIREIP---CVDPNTPVSHVTMSET-N 431 (556)
Q Consensus 358 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg--~I~iwdl~~~~~v~~l~---~~h~~~~V~~l~~sp~-~ 431 (556)
.. .+..+......- +++...++.+++.|+.++ .+.+||..+.+....-. .+.+.....++.+..+ +
T Consensus 480 W~-------~~~~~p~~R~~h-~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~ 551 (695)
T 2zwa_A 480 WS-------MIKSLSHTRFRH-SACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSK 551 (695)
T ss_dssp EE-------ECCCCSBCCBSC-EEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTT
T ss_pred EE-------ECCCCCCCcccc-eEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCC
Confidence 11 011111111111 222223778888887654 79999999876443221 1000223344566655 4
Q ss_pred CeEEEEeecCc--CCCCeEEEEEeCCcE------EEEee----cCCCeEEEEEeeCCCCCcceEEEEEeC--------CC
Q psy10778 432 GEIASVLQTTK--TGGSILRLHTINAQL------ITSLA----SELRITSVTFSNAPEGVSQNVIVTGHS--------DG 491 (556)
Q Consensus 432 ~~i~s~s~~~~--~~d~~I~iwdi~g~~------i~~~~----~~~~i~~i~~s~~pdg~~~~~l~tg~~--------dg 491 (556)
..++.|+.... ...+.+..||+.... -..+. ....-.+++.. .++ ++++.|+. ..
T Consensus 552 ~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~~~--~~~---~iyv~GG~~~~~~~~~~~ 626 (695)
T 2zwa_A 552 QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIKYI--TPR---KLLIVGGTSPSGLFDRTN 626 (695)
T ss_dssp EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEEEE--ETT---EEEEECCBCSSCCCCTTT
T ss_pred EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEEEe--CCC---EEEEECCccCCCCCCCCC
Confidence 45555553110 123578899987332 22221 11112233333 335 78888874 34
Q ss_pred eEEEEeCCCCeEE
Q psy10778 492 TIQLWSGYKLAHL 504 (556)
Q Consensus 492 ~I~iwd~~~~~~~ 504 (556)
.+.+||..+.+-.
T Consensus 627 ~v~~yd~~t~~W~ 639 (695)
T 2zwa_A 627 SIISLDPLSETLT 639 (695)
T ss_dssp SEEEEETTTTEEE
T ss_pred eEEEEECCCCeEE
Confidence 5899998877654
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=92.50 E-value=8.1 Score=37.37 Aligned_cols=204 Identities=10% Similarity=0.036 Sum_probs=113.4
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe--CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL--TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVT 379 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs--~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~ 379 (556)
+..|+..++...+...+.. .. +.+++++++.|+-.. .++.-.||.+.... .....+..+..
T Consensus 87 ~~~Iy~i~~dg~~~~~l~~----~~--~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dG--------s~~~~lt~~~~--- 149 (302)
T 3s25_A 87 RNSLCRIKRNGHGSTVLDP----DP--CIYASLIGNYIYYLHYDTQTATSLYRIRIDG--------EEKKKIKNHYL--- 149 (302)
T ss_dssp SEEEEEEETTSCCCEEEEC----SC--EEEEEEETTEEEEEEESSSSCEEEEEEETTS--------CCCEEEESSCC---
T ss_pred CCeEEEEeCCCCcceEeec----CC--ccEEEEeCCEEEEEeecCCCCceEEEEECCC--------CCeEEEeCCCc---
Confidence 4577888887665433322 11 235677888888776 56677777776542 12244444433
Q ss_pred EEEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 380 DLYLCAGFSVAVSSSE-DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
.+++++++.|.-.+. ...|.+-++..+...+.+.. . .. ..++|+++.|+-.... ....|..-+++|...
T Consensus 150 -~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~~---~--~~-~~~~P~g~~iy~t~~~---~~~~I~~~~ldG~~~ 219 (302)
T 3s25_A 150 -FTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYDC---N--CY-KPVVLDDTNVYYMDVN---RDNAIVHVNINNPNP 219 (302)
T ss_dssp -CCSEEETTEEEEECTTTCCEEEEETTTTEEEEEECS---C--EE-EEEEEETTEEEEEEGG---GTTEEEEECSSSCCC
T ss_pred -eEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeCC---C--cc-ceeeecCCEEEEEEcC---CCcEEEEEECCCCCe
Confidence 345777887775554 67888888876554433333 1 22 3466999999877621 124677777776544
Q ss_pred EEeecCCCeEEEEEeeCCCCCcceEEEEEe--CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc-CCCc
Q psy10778 459 TSLASELRITSVTFSNAPEGVSQNVIVTGH--SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN-TEGL 535 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~--~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~ 535 (556)
..+. ...+.. ++ |++ ..|.-++ ..+.|..-++. |...+.+..+ .+.. +++.+.+|+-.. ..+.
T Consensus 220 ~~Lt-~~~~~~--~~--~~g---~~Iy~~~~~~~~~i~~~~~D-G~~r~~l~~~---~~~~--i~i~~d~Iy~td~~~~~ 285 (302)
T 3s25_A 220 VVLT-EANIEH--YN--VYG---SLIFYQRGGDNPALCVVKND-GTGFKELAKG---EFCN--INVTSQYVYFTDFVSNK 285 (302)
T ss_dssp EECS-CSCEEE--EE--EET---TEEEEEECSSSCEEEEEETT-SCCCEEEEES---CEEE--EEECSSEEEEEETTTCC
T ss_pred EEEe-CCCcce--EE--ECC---CEEEEEECCCCcEEEEEECC-CCccEEeeCC---ccce--EEEeCCEEEEEECCCCe
Confidence 4442 233433 55 556 4555442 34567776763 4333344312 2443 444566666444 4566
Q ss_pred EEEEEcCCCCC
Q psy10778 536 VIIWESSSHNR 546 (556)
Q Consensus 536 V~vwdl~~~~~ 546 (556)
|..-++.....
T Consensus 286 i~~~~~dGs~~ 296 (302)
T 3s25_A 286 EYCTSTQNPDT 296 (302)
T ss_dssp EEEEESSSCCS
T ss_pred EEEEECCCCCc
Confidence 66555444333
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=92.07 E-value=3.1 Score=48.76 Aligned_cols=232 Identities=10% Similarity=0.070 Sum_probs=139.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++|--. ..++.++++++........ -...|.-=.|..+ +.|+..+ +..|..|++.... .|++.+.-|
T Consensus 79 iiALra-g~~lQiFnl~~k~klks~~--~~e~VvfWkWis~-~~l~lVT-~~aVyHW~~~~~s--------~P~k~fdR~ 145 (1630)
T 1xi4_A 79 VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--------QPVKMFDRH 145 (1630)
T ss_pred eEEEec-CCeEEEeehHHhhhhcccc--cCCCceEEEecCC-CeeEEEc-CCeEEEeccCCCC--------ccHHHHhcc
Confidence 555443 6899999998765555443 2345666677655 4555444 4689999996531 222333333
Q ss_pred ----CccEEEEEEccCCCEEEEEc-------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEe--CC-CCeEEEEeec
Q psy10778 375 ----SACVTDLYLCAGFSVAVSSS-------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMS--ET-NGEIASVLQT 440 (556)
Q Consensus 375 ----~~~V~~l~~s~~~~~l~sgs-------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~s--p~-~~~i~s~s~~ 440 (556)
...|..-..+++.++++..+ -.|.+.+|+..+ +..+.+.+ | .+....+... +. ...++.+...
T Consensus 146 ~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er-~~sQ~ieg-h-a~~F~~~~~~~~~~~~~l~~f~~~~ 222 (1630)
T 1xi4_A 146 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEG-H-AASFAQFKMEGNAEESTLFCFAVRG 222 (1630)
T ss_pred hhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccc-ccchhhhH-h-HhhhheeccCCCCCCceEEEEEEec
Confidence 35677778888888766432 358888998875 34455555 5 3333333332 11 1233333211
Q ss_pred CcCCCCeEEEEEeCCc----EEE---E---e-e---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEE
Q psy10778 441 TKTGGSILRLHTINAQ----LIT---S---L-A---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLT 506 (556)
Q Consensus 441 ~~~~d~~I~iwdi~g~----~i~---~---~-~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~ 506 (556)
. .++.+++.++... ... . . . ..+...++..+ +.. .++..-+.-|.|+++|+.++.++..
T Consensus 223 ~--~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs--~k~---g~iy~itk~G~~~~~d~~t~~~i~~ 295 (1630)
T 1xi4_A 223 Q--AGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS--EKH---DVVFLITKYGYIHLYDLETGTCIYM 295 (1630)
T ss_pred C--CCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEEec--ccc---CEEEEEecCceEEEEecccchhhhh
Confidence 1 3478888887321 110 0 0 0 13445567777 443 4777888889999999999998776
Q ss_pred ecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 507 LNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 507 ~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
-. -...+|-..+-+....-+++....|.|.--.+.....+|-+
T Consensus 296 ~r-is~~~iF~~~~~~~~~g~~~vnr~G~vl~v~v~~~~iv~yi 338 (1630)
T 1xi4_A 296 NR-ISGETIFVTAPHEATAGIIGVNRKGQVLSVCVEEENIIPYI 338 (1630)
T ss_pred cc-ccCCceEEeccCCCCCceEEEcCCceEEEEEEccchhhhhH
Confidence 55 23455655555544445666678888888888877666654
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=91.96 E-value=14 Score=38.93 Aligned_cols=217 Identities=12% Similarity=0.063 Sum_probs=127.9
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEc--CCCCEEEEEeCC-------CcE---------EEEEeee
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTA--PDCHTLWLGLTS-------GNI---------LVYEYEL 355 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s--~dg~~l~tgs~D-------g~I---------~vwd~~~ 355 (556)
.+++-.-....|-..+++.-+...++.......+..+++- |+..+++++++. |.. .+|..-.
T Consensus 144 ylfiNdkan~RvAri~l~~~~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~iD 223 (638)
T 3sbq_A 144 YLFINDKANSRVARIRLDIMKCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAID 223 (638)
T ss_dssp EEEEEETTTTEEEEEETTTTEEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEEE
T ss_pred EEEEecCCCcceEEEECCcEeeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEEc
Confidence 3455555666777777777777777777788889999987 688888888743 221 1111111
Q ss_pred ccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--------------------------------------C
Q psy10778 356 NASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED--------------------------------------G 397 (556)
Q Consensus 356 ~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D--------------------------------------g 397 (556)
. .+ ++....+. -.+..-.+...+++++.++.+.+ +
T Consensus 224 ~-~t-----m~v~~Qv~-v~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~ 296 (638)
T 3sbq_A 224 A-ET-----MEMAFQVI-VDGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLG 296 (638)
T ss_dssp T-TT-----CSEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCT
T ss_pred C-Cc-----cEEEEEEE-cCCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEEC
Confidence 0 00 00000000 01122233445566666654422 1
Q ss_pred --cEEEEeCCC----C-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-------Cc-------
Q psy10778 398 --TCLLWDINT----I-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-------AQ------- 456 (556)
Q Consensus 398 --~I~iwdl~~----~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-------g~------- 456 (556)
.+.+-|.+. + ..++-+.. ......+.++|||+++++++. .+.++.++|++ ++
T Consensus 297 g~gv~ViD~~~~~~~~~~~~~~iP~---pksPHGv~vsPDGkyi~v~GK----LsptvtV~d~~k~~~~~~~k~~~~~~~ 369 (638)
T 3sbq_A 297 DSKTPVLDGRKKDGKDSKFTRYVPV---PKNPHGCNTSSDGKYFIAAGK----LSPTCSMIAIDKLPDLFAGKLADPRDV 369 (638)
T ss_dssp TCCCCEEECSCBTTBCCSSEEEEEE---SSSCCCEEECTTSCEEEEECT----TSSBEEEEEGGGHHHHHTTCCSCGGGG
T ss_pred CCCeeEEccccccccCCceEEEEeC---CCCCcceeeCCCCCEEEEcCC----CCCeEEEEEeehhhhhhhccccCcccc
Confidence 244444443 1 22333333 344567889999999999875 67899999985 22
Q ss_pred EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC----------eEEEEecCCCCCCeEEEEE------
Q psy10778 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL----------AHLLTLNTNVALPVIAVTY------ 520 (556)
Q Consensus 457 ~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~----------~~~~~~~~~h~~~V~~l~~------ 520 (556)
.+......-.....+|. ++| +...+-.-|..|.-|++... ..+..+. -|-. +-.+.-
T Consensus 370 ~~ae~e~GlGPlHt~Fd--~~G---~aYTtlfidSqvvkWni~~a~~~~~g~~~~~v~~k~d-v~Yq-pGH~~~~~get~ 442 (638)
T 3sbq_A 370 IVGEPELGLGPLHTTFD--GRG---NAYTTLFIDSQVVKWNMEEAVRAYKGEKVNYIKQKLD-VHYQ-PGHLHASLCETN 442 (638)
T ss_dssp EEECCBCCSCEEEEEEC--SSS---EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEE-CSSC-EEEEEETTTTST
T ss_pred eEeeccCCCcccEEEEC--CCC---ceEeeeeecceEEEEeccHHHHHhcCccCCeeeeccc-cccC-CcccccCCCccC
Confidence 24455556677889999 888 77777779999999998543 3555555 3322 222222
Q ss_pred ecCCCEEEEEc
Q psy10778 521 SCDSQHLYASN 531 (556)
Q Consensus 521 s~dg~~l~sgs 531 (556)
.+||++|++..
T Consensus 443 ~~dGk~lv~ln 453 (638)
T 3sbq_A 443 EADGKWLVALS 453 (638)
T ss_dssp TCCSCEEEEEE
T ss_pred CCCccEEEEec
Confidence 46777777764
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=91.60 E-value=12 Score=38.53 Aligned_cols=113 Identities=14% Similarity=0.128 Sum_probs=64.7
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE--EEEeCCC----CCCCCeeEEEEeCC---CCeEEEEeecC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY--IREIPCV----DPNTPVSHVTMSET---NGEIASVLQTT 441 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~--v~~l~~~----h~~~~V~~l~~sp~---~~~i~s~s~~~ 441 (556)
+...-...+.|+|.|+|+++++-...+.|++++..+++. +..+... ........|+++|+ ++.|.++....
T Consensus 22 ~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~ 101 (454)
T 1cru_A 22 ILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFK 101 (454)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred EECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEecc
Confidence 333345667999999999888765555788888655543 2233210 00356779999996 56665554210
Q ss_pred -c---CC----CCeEEEEEeCC---cE-----EE-Eee--cCCCeEEEEEeeCCCCCcceEEEEEe
Q psy10778 442 -K---TG----GSILRLHTINA---QL-----IT-SLA--SELRITSVTFSNAPEGVSQNVIVTGH 488 (556)
Q Consensus 442 -~---~~----d~~I~iwdi~g---~~-----i~-~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~ 488 (556)
. +. ...|.-++.+. .+ +. .+. .......|+|. ++| .+.++.+
T Consensus 102 ~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~--pDG---~Lyv~~G 162 (454)
T 1cru_A 102 NPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIG--PDQ---KIYYTIG 162 (454)
T ss_dssp CTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEEC--TTS---CEEEEEC
T ss_pred ccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeEC--CCC---eEEEEEC
Confidence 0 00 23566666531 11 11 121 12457899999 899 6666543
|
| >3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor} | Back alignment and structure |
|---|
Probab=90.99 E-value=13 Score=36.71 Aligned_cols=151 Identities=11% Similarity=0.055 Sum_probs=85.5
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE--EEEeCCC--CCCCCeeEEEEeCC---CCeEEEEeecCcC
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY--IREIPCV--DPNTPVSHVTMSET---NGEIASVLQTTKT 443 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~--v~~l~~~--h~~~~V~~l~~sp~---~~~i~s~s~~~~~ 443 (556)
+...-..-+.|+|.|+|+++++--..|.|++++...++. +..+... ........|+++|+ ++.|.+.-...
T Consensus 27 va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~-- 104 (347)
T 3das_A 27 VATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSA-- 104 (347)
T ss_dssp EECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECS--
T ss_pred eecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecC--
Confidence 334445678999999999888876689999998765543 2222110 11456889999996 45554432110
Q ss_pred CCCeEEEEEeCC-----------cE-EEEee--cCCCeEEEEEeeCCCCCcceEEEEEeC-------------CCeEEEE
Q psy10778 444 GGSILRLHTINA-----------QL-ITSLA--SELRITSVTFSNAPEGVSQNVIVTGHS-------------DGTIQLW 496 (556)
Q Consensus 444 ~d~~I~iwdi~g-----------~~-i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~-------------dg~I~iw 496 (556)
.++.|.-|...+ +. +..+. .......|+|. |+| .+.++.+. .|.|.-.
T Consensus 105 ~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fg--pDG---~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi 179 (347)
T 3das_A 105 SDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFG--PDK---MLYAGTGESGDTGLSQDRKSLGGKILRM 179 (347)
T ss_dssp SSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEEC--TTS---CEEEECBCTTCGGGTTCTTCSTTCEEEE
T ss_pred CCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCC--CCC---CEEEEECCCCCCccccCCCCCCCEEEEE
Confidence 345566665543 11 11221 12345678999 888 66665432 2444444
Q ss_pred eCCCCe--------EEEEecCCCCCCeEEEEEecCCCEEEEE
Q psy10778 497 SGYKLA--------HLLTLNTNVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 497 d~~~~~--------~~~~~~~~h~~~V~~l~~s~dg~~l~sg 530 (556)
+.. ++ ....+..+|.. ...++|+|+|.+.++-
T Consensus 180 ~~d-G~ip~~nPf~~~~i~a~G~RN-p~Gla~dp~G~L~~~d 219 (347)
T 3das_A 180 TPD-GEPAPGNPFPGSPVYSYGHRN-VQGLAWDDKQRLFASE 219 (347)
T ss_dssp CTT-SSBCTTCSSTTCCEEEBCCSB-CCEEEECTTCCEEEEE
T ss_pred eCC-CCccCCCCCCCCeEEeeCCCC-cceEEECCCCCEEEEe
Confidence 542 22 01122224533 4688999988766543
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=90.81 E-value=8.6 Score=35.46 Aligned_cols=143 Identities=10% Similarity=-0.065 Sum_probs=81.2
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE------EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY------IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~------v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
..+.+++|+|+|.+.+. .+|.+.-.+..+... -..+-. ..-..-.++.+.++|.+.++ + ++.|+
T Consensus 41 ~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~-~Gw~~F~a~~fD~~G~LYav-~------dG~iy 110 (236)
T 1tl2_A 41 SNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGN-GGWNQFQFLFFDPNGYLYAV-S------KDKLY 110 (236)
T ss_dssp TTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEEC-SCGGGCSEEEECTTSCEEEE-E------TTEEE
T ss_pred ccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecc-cccccceEEEECCCCCEEEe-C------CCEEE
Confidence 46779999998886555 677776666544111 122211 00122478999999887777 5 48887
Q ss_pred EEEe--CCcE--E---EEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe------EEEEecCCCCCC
Q psy10778 450 LHTI--NAQL--I---TSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------HLLTLNTNVALP 514 (556)
Q Consensus 450 iwdi--~g~~--i---~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------~~~~~~~~h~~~ 514 (556)
-++- ++.- + ..+. .=..+..+.+. |+| .+.++. ||.++-+...+.. ....+....-..
T Consensus 111 r~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~--p~G---~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~ 183 (236)
T 1tl2_A 111 KASPPQSDTDNWIARATEVGSGGWSGFKFLFFH--PNG---YLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDT 183 (236)
T ss_dssp EESCCCSTTCCHHHHSEEEECSSGGGEEEEEEC--TTS---CEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGG
T ss_pred EeCCCcCCCCceeccccEeccCCCCceEEEEEC--CCc---eEEEEe--CCcEEecCCCCCCCcccccccceeccCCcce
Confidence 7765 2211 0 1111 11467899999 999 555554 7876544433211 111221112233
Q ss_pred eEEEEEecCCCEEEEEcCCCcEE
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVI 537 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~ 537 (556)
-+-+.|++++.+.++. +|.++
T Consensus 184 yr~l~f~~~G~l~~v~--~g~~Y 204 (236)
T 1tl2_A 184 FKFLFFSSVGTLFGVQ--GGKFY 204 (236)
T ss_dssp EEEEEECTTSCEEEEE--TTEEE
T ss_pred EEEEEECCCCcEEEEe--CCeEE
Confidence 4557799998777665 77443
|
| >3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale} | Back alignment and structure |
|---|
Probab=90.63 E-value=13 Score=35.95 Aligned_cols=205 Identities=6% Similarity=-0.064 Sum_probs=109.6
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC------------cEEEEEeeeccCcccccccCC
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG------------NILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg------------~I~vwd~~~~~~~~~~~~~~~ 367 (556)
..++.|...+.+......+.. + .+--++++|++|+-+.... .-.|+.+..... .
T Consensus 34 ~d~~~ly~~~~dg~~~~~l~~----~--~~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~--------~ 99 (302)
T 3s25_A 34 NDNGRLYAMNIDGSNIHKLSN----D--TAMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGH--------G 99 (302)
T ss_dssp GGTTEEEEEETTSCSCEEEEE----E--EEEEEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSC--------C
T ss_pred CCCceEEEEcCCCCCCEEccC----C--ceeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCC--------c
Confidence 345666666665443333221 1 2334567888888775432 234444443211 1
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEc--CC--CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSS--ED--GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs--~D--g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
...+.... +..++++++.|+-.. .+ ..|..-++. +.....+.. + .. .+++++++.|...+.
T Consensus 100 ~~~l~~~~----~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~d-Gs~~~~lt~-~-~~----~~~~~~g~~iy~t~~---- 164 (302)
T 3s25_A 100 STVLDPDP----CIYASLIGNYIYYLHYDTQTATSLYRIRID-GEEKKKIKN-H-YL----FTCNTSDRYFYYNNP---- 164 (302)
T ss_dssp CEEEECSC----EEEEEEETTEEEEEEESSSSCEEEEEEETT-SCCCEEEES-S-CC----CCSEEETTEEEEECT----
T ss_pred ceEeecCC----ccEEEEeCCEEEEEeecCCCCceEEEEECC-CCCeEEEeC-C-Cc----eEeeEECCEEEEEeC----
Confidence 12232222 235677888777655 33 445555665 333444544 3 22 456788999987762
Q ss_pred CCCeEEEEEeCCcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCC--CeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 444 GGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD--GTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 444 ~d~~I~iwdi~g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~d--g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
....|...+++|.....+. .+... ..+. |++ ..|+-...+ ..|..-++.... ...+. ...+ ..++
T Consensus 165 g~~~Iy~~~l~g~~~~~l~-~~~~~-~~~~--P~g---~~iy~t~~~~~~~I~~~~ldG~~-~~~Lt---~~~~--~~~~ 231 (302)
T 3s25_A 165 KNGQLYRYDTASQSEALFY-DCNCY-KPVV--LDD---TNVYYMDVNRDNAIVHVNINNPN-PVVLT---EANI--EHYN 231 (302)
T ss_dssp TTCCEEEEETTTTEEEEEE-CSCEE-EEEE--EET---TEEEEEEGGGTTEEEEECSSSCC-CEECS---CSCE--EEEE
T ss_pred CCceEEEEECCCCCEEEEe-CCCcc-ceee--ecC---CEEEEEEcCCCcEEEEEECCCCC-eEEEe---CCCc--ceEE
Confidence 3678888888865544442 22222 3455 666 566554433 366666664433 44443 2333 3478
Q ss_pred cCCCEEEEEcC--CCcEEEEEcCCCCC
Q psy10778 522 CDSQHLYASNT--EGLVIIWESSSHNR 546 (556)
Q Consensus 522 ~dg~~l~sgs~--Dg~V~vwdl~~~~~ 546 (556)
|++..|+-++. .+.|..-++....+
T Consensus 232 ~~g~~Iy~~~~~~~~~i~~~~~DG~~r 258 (302)
T 3s25_A 232 VYGSLIFYQRGGDNPALCVVKNDGTGF 258 (302)
T ss_dssp EETTEEEEEECSSSCEEEEEETTSCCC
T ss_pred ECCCEEEEEECCCCcEEEEEECCCCcc
Confidence 88888876532 35666666655443
|
| >2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12} | Back alignment and structure |
|---|
Probab=90.48 E-value=14 Score=36.33 Aligned_cols=209 Identities=11% Similarity=0.044 Sum_probs=107.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccC----CCEEEEEcC------
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAG----FSVAVSSSE------ 395 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~----~~~l~sgs~------ 395 (556)
....++|.|+|+.|+++...|.|++++.... ...... ...............|+++|+ +.+.++-+.
T Consensus 19 ~P~~i~~~pdG~~l~V~e~~G~i~~~~~~g~--~~~~~~-~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~~~~~~g~ 95 (353)
T 2g8s_A 19 HPWALAFLPDNHGMLITLRGGELRHWQAGKG--LSAPLS-GVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYSEVGDDGK 95 (353)
T ss_dssp SEEEEEECSTTCCEEEEETTTEEEEEETTTE--ECCCCB-SCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEEEECSSSC
T ss_pred CcEEEEEcCCCCEEEEEeCCceEEEEeCCCc--eeeEec-CCcccccCCCCCceeEEECCCCCCCCEEEEEEeCCCCCCC
Confidence 4678999999983445556798888873211 000000 000112223456789999995 444444322
Q ss_pred -CCcEEEEeCCCC----eEEEE-eCC-CC---CCCCeeEEEEeCCCCeEEEEeecC--------cCCCCeEEEEEeCCcE
Q psy10778 396 -DGTCLLWDINTI----GYIRE-IPC-VD---PNTPVSHVTMSETNGEIASVLQTT--------KTGGSILRLHTINAQL 457 (556)
Q Consensus 396 -Dg~I~iwdl~~~----~~v~~-l~~-~h---~~~~V~~l~~sp~~~~i~s~s~~~--------~~~d~~I~iwdi~g~~ 457 (556)
...|..+++... ...+. +.. +. .......|+|.|+|.+.++.+... ....+.|.-++.+|..
T Consensus 96 ~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~ri~~dG~~ 175 (353)
T 2g8s_A 96 AGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVRLTDQGEI 175 (353)
T ss_dssp EEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEEEETTSCC
T ss_pred ceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEEECCCCCC
Confidence 235666666432 11111 111 00 012346799999986666654211 0123567777766541
Q ss_pred -------------EEEee-cCCCeEEEEEeeCC-CCCcceEEEEEeC-CCeEEEEeCCCC--------------------
Q psy10778 458 -------------ITSLA-SELRITSVTFSNAP-EGVSQNVIVTGHS-DGTIQLWSGYKL-------------------- 501 (556)
Q Consensus 458 -------------i~~~~-~~~~i~~i~~s~~p-dg~~~~~l~tg~~-dg~I~iwd~~~~-------------------- 501 (556)
...+. .......++|. + +| ++.++-.. ++.=.|.-+..+
T Consensus 176 p~~npf~~~~~~~~~i~a~G~rnp~gl~~d--~~~g---~l~~~d~g~~~~dei~~i~~G~nyGwp~~~~~~~~~~~~~~ 250 (353)
T 2g8s_A 176 PDDNPFIKESGVRAEIWSYGIRNPQGMAMN--PWSN---ALWLNEHGPRGGDEINIPQKGKNYGWPLATWGINYSGFKIP 250 (353)
T ss_dssp CTTCTTTTSTTSCTTEEEECCSEEEEEEEE--TTTT---EEEEEEECSBSCEEEECCCTTCBCCTTTBCSSBCTTSSCCT
T ss_pred CCCCCCcCCCCCCccEEEEcCcCccceEEE--CCCC---CEEEEecCCCCCcEEeEeccCCcCCCCCccCCCCCCCCccC
Confidence 11111 23457889999 7 56 55554332 111122211111
Q ss_pred -----------eEEEEecCCCCCCeEEEEEec-------CCCEEEEEcCCCcEEEEEcCCC
Q psy10778 502 -----------AHLLTLNTNVALPVIAVTYSC-------DSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 502 -----------~~~~~~~~~h~~~V~~l~~s~-------dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.++..+. +...+..++|.. +|.++++.-..+.|...++..+
T Consensus 251 ~~~~~~~~~~~~P~~~~~--~~~ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~ 309 (353)
T 2g8s_A 251 EAKGEIVAGTEQPVFYWK--DSPAVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGD 309 (353)
T ss_dssp TCCBSSCTTSCCCSEEES--SCCCEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETT
T ss_pred cccCCCCCCccCCeEEeC--CCcCcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCC
Confidence 1112222 234677888864 5777777777888888887653
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=90.39 E-value=6.8 Score=46.05 Aligned_cols=227 Identities=7% Similarity=0.053 Sum_probs=123.4
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
...+|.+.|+.++.........-. +.-.+|..+.+|.-. ..++.|+++++. ..++...- ..+|.-
T Consensus 46 ~~~~vvIidl~~~~~~~rrpi~Ad----sAIMnP~~~iiALra-g~~lQiFnl~~k---------~klks~~~-~e~Vvf 110 (1630)
T 1xi4_A 46 EQAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMK---------SKMKAHTM-TDDVTF 110 (1630)
T ss_pred CCceEEEEECCCCCCcccccccch----hhccCCCcceEEEec-CCeEEEeehHHh---------hhhccccc-CCCceE
Confidence 344788888876543322111122 233567777776655 689999999876 22222222 234555
Q ss_pred EEEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCC---CCCeeEEEEeCCCCeEEEEeecC--cCCCCeEEEEEeC
Q psy10778 381 LYLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDP---NTPVSHVTMSETNGEIASVLQTT--KTGGSILRLHTIN 454 (556)
Q Consensus 381 l~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~---~~~V~~l~~sp~~~~i~s~s~~~--~~~d~~I~iwdi~ 454 (556)
=.|-.+..+-+. + +..|.-|++... .+++.+.. |. ...|..-..+++.++++..+-.. +.-.|.+.+|+..
T Consensus 111 WkWis~~~l~lV-T-~~aVyHW~~~~~s~P~k~fdR-~~~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~e 187 (1630)
T 1xi4_A 111 WKWISLNTVALV-T-DNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVD 187 (1630)
T ss_pred EEecCCCeeEEE-c-CCeEEEeccCCCCccHHHHhc-chhcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecc
Confidence 556544443222 2 467999999632 33333332 20 35677778888999887665322 1245788888886
Q ss_pred CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEe---CCCeEEEEeCCCC---eE------EEE-ecC-CCCCCeEEEE
Q psy10778 455 AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYKL---AH------LLT-LNT-NVALPVIAVT 519 (556)
Q Consensus 455 g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~~---~~------~~~-~~~-~h~~~V~~l~ 519 (556)
.+.-+.+. |......+.....+.. ..+++.+. ..++++|.++... .. +.. +.. ....-..++.
T Consensus 188 r~~sQ~iegha~~F~~~~~~~~~~~--~~l~~f~~~~~~g~kLhi~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~ 265 (1630)
T 1xi4_A 188 RKVSQPIEGHAASFAQFKMEGNAEE--STLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQ 265 (1630)
T ss_pred cccchhhhHhHhhhheeccCCCCCC--ceEEEEEEecCCCceEEEEecCCCccCCCCCccccccccCCcccccCcceEEE
Confidence 44333332 1111111111100111 02222222 1368888887432 11 111 110 1123345788
Q ss_pred EecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 520 YSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 520 ~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
.|+....++..+.-|-|+++|+.++..+
T Consensus 266 vs~k~g~iy~itk~G~~~~~d~~t~~~i 293 (1630)
T 1xi4_A 266 ISEKHDVVFLITKYGYIHLYDLETGTCI 293 (1630)
T ss_pred eccccCEEEEEecCceEEEEecccchhh
Confidence 8888889999999999999999996653
|
| >2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus} | Back alignment and structure |
|---|
Probab=90.01 E-value=5.4 Score=38.45 Aligned_cols=113 Identities=8% Similarity=0.007 Sum_probs=57.1
Q ss_pred cCCCEEEEEcC------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 385 AGFSVAVSSSE------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 385 ~~~~~l~sgs~------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
.++++++.|+. -..+.++|+.+.+....-..+. ...-.+++.. ++..++.|+.........+.+||+....-
T Consensus 157 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 234 (318)
T 2woz_A 157 HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKT-PRSMFGVAIH-KGKIVIAGGVTEDGLSASVEAFDLKTNKW 234 (318)
T ss_dssp ETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSS-CCBSCEEEEE-TTEEEEEEEEETTEEEEEEEEEETTTCCE
T ss_pred ECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCC-CcccceEEEE-CCEEEEEcCcCCCCccceEEEEECCCCeE
Confidence 35677777764 2458999999876443322201 1111222332 45666666532211124577888864322
Q ss_pred EEee---cCCCeEEEEEeeCCCCCcceEEEEEeCC--------------CeEEEEeCCCCeEEE
Q psy10778 459 TSLA---SELRITSVTFSNAPEGVSQNVIVTGHSD--------------GTIQLWSGYKLAHLL 505 (556)
Q Consensus 459 ~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~d--------------g~I~iwd~~~~~~~~ 505 (556)
..+. ....-.+++.. ++ ++++.|+.+ ..+.+||..+.+-..
T Consensus 235 ~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~ 292 (318)
T 2woz_A 235 EVMTEFPQERSSISLVSL---AG---SLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAG 292 (318)
T ss_dssp EECCCCSSCCBSCEEEEE---TT---EEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEE
T ss_pred EECCCCCCcccceEEEEE---CC---EEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehh
Confidence 2221 11112233333 34 677777653 357778877655433
|
| >4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens} | Back alignment and structure |
|---|
Probab=89.65 E-value=3.5 Score=39.78 Aligned_cols=112 Identities=13% Similarity=0.014 Sum_probs=57.0
Q ss_pred cCCCEEEEEcC-C-----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEE
Q psy10778 385 AGFSVAVSSSE-D-----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLI 458 (556)
Q Consensus 385 ~~~~~l~sgs~-D-----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i 458 (556)
.++++++.|+. + ..+.++|+.+.+....-..+. ...-.+++.. ++..++.|+.........+.+||+....-
T Consensus 147 ~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~-~r~~~~~~~~-~~~iyv~GG~~~~~~~~~~~~yd~~~~~W 224 (315)
T 4asc_A 147 HMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQT-ARSLFGATVH-DGRIIVAAGVTDTGLTSSAEVYSITDNKW 224 (315)
T ss_dssp ETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE-TTEEEEEEEECSSSEEEEEEEEETTTTEE
T ss_pred ECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCC-chhceEEEEE-CCEEEEEeccCCCCccceEEEEECCCCeE
Confidence 35667777765 2 468999998865433221101 1111122222 55666776632211123678888874433
Q ss_pred EEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCC--------------eEEEEeCCCCeEE
Q psy10778 459 TSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDG--------------TIQLWSGYKLAHL 504 (556)
Q Consensus 459 ~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg--------------~I~iwd~~~~~~~ 504 (556)
..+. ....-.+++.. ++ ++++.|+.++ .+.+||..+.+-.
T Consensus 225 ~~~~~~p~~r~~~~~~~~---~~---~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~ 281 (315)
T 4asc_A 225 APFEAFPQERSSLSLVSL---VG---TLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWE 281 (315)
T ss_dssp EEECCCSSCCBSCEEEEE---TT---EEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEE
T ss_pred EECCCCCCcccceeEEEE---CC---EEEEECCccccCcCCccccccccCcEEEecCCCChhh
Confidence 3332 12222233333 34 6777777532 3667887665543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=89.62 E-value=2.5 Score=40.54 Aligned_cols=207 Identities=14% Similarity=0.088 Sum_probs=106.0
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
||.|..|-....-.+.. .......|..++...+ ..++. . ||.|..|-.....+.+.+. . -...|..+
T Consensus 41 ~G~v~~wG~n~~Gqlg~-p~~~~~~i~~ia~G~~-hs~~l-~-~G~v~~wG~n~~Gqlg~P~-----~----~~~~v~~i 107 (282)
T 3qhy_B 41 GGKVLGWGANLNGQLTM-PAATQSGVDAIAAGNY-HSLAL-K-DGEVIAWGGNEDGQTTVPA-----E----ARSGVDAI 107 (282)
T ss_dssp TTEEEEEECCSSSTTSC-CGGGGSCCCEEEECSS-EEEEE-E-TTEEEEEECCTTSTTCCCG-----G----GSSSEEEE
T ss_pred CCEEEEEeCCCCCCCCC-CccCCCCEEEEEeCCC-EEEEE-E-CCEEEEeeCCCCCCCCCCc-----c----cCCCeEEE
Confidence 77777776543211111 0011235777776544 33444 4 8999999766442222111 1 12467777
Q ss_pred EEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEE
Q psy10778 382 YLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLI 458 (556)
Q Consensus 382 ~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i 458 (556)
+.......++ . ||.|..|-.... +.-..... ...|..++.-.. +.+.. .++.|+.|-.+ +++-
T Consensus 108 a~G~~hs~al--~-~G~v~~wG~n~~gqlg~~~~~---~~~i~~i~~G~~--~~~~l------~~G~v~~wG~n~~gqlg 173 (282)
T 3qhy_B 108 AAGAWASYAL--K-DGKVIAWGDDSDGQTTVPAEA---QSGVTALDGGVY--TALAV------KNGGVIAWGDNYFGQTT 173 (282)
T ss_dssp EEETTEEEEE--E-TTEEEEEECCTTSTTSCCGGG---GSSEEEEEECSS--EEEEE------ETTEEEEEECCTTSTTS
T ss_pred ECcCCEEEEE--e-CCeEEEecCCCCCcCCCCccC---CCCeEEEEcccC--EEEEE------ECCEEEEecCCCCCCCC
Confidence 7665433333 4 899999976542 21111111 345666555432 22222 35778877664 3321
Q ss_pred EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEE
Q psy10778 459 TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII 538 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v 538 (556)
........|..++.. .. ..++. .||.|+.|-......+..-. .....|..++-..+...+ -+ ||.|+.
T Consensus 174 ~p~~~~~~v~~i~~G--~~----hs~al--~~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h~~a--l~-~g~v~~ 241 (282)
T 3qhy_B 174 VPAEAQSGVDDVAGG--IF----HSLAL--KDGKVIAWGDNRYKQTTVPT-EALSGVSAIASGEWYSLA--LK-NGKVIA 241 (282)
T ss_dssp CCGGGGSSEEEEEEC--SS----EEEEE--ETTEEEEEECCTTSTTCCCG-GGGSSCCEEEECSSCEEE--EE-TTEEEE
T ss_pred CceecCCCeEEEEec--CC----EEEEE--ECCeEEEEECCCCCCCCCCc-ccCCCceEEEcCCCEEEE--EE-CCEEEE
Confidence 111223567777765 32 44555 59999999754322111101 112457777665443333 33 999999
Q ss_pred EEcCCCCCc
Q psy10778 539 WESSSHNRT 547 (556)
Q Consensus 539 wdl~~~~~~ 547 (556)
|=.......
T Consensus 242 wG~n~~gq~ 250 (282)
T 3qhy_B 242 WGSSRTAPS 250 (282)
T ss_dssp ESTTCCCCG
T ss_pred ecCCCCccc
Confidence 977664433
|
| >2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=88.88 E-value=1.6 Score=43.26 Aligned_cols=110 Identities=10% Similarity=0.045 Sum_probs=70.9
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC--CCeeEEEE--eCCCCeEEEE--eecCcCCCCeEEEEEeC-CcEEEE
Q psy10778 388 SVAVSSSEDGTCLLWDINTIGYIREIPCVDPN--TPVSHVTM--SETNGEIASV--LQTTKTGGSILRLHTIN-AQLITS 460 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~--~~V~~l~~--sp~~~~i~s~--s~~~~~~d~~I~iwdi~-g~~i~~ 460 (556)
.+++.++.||.|.-.|..+|+...+++. . .++....- .+.++.++.+ . .+|.|..++.. |.....
T Consensus 11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~---~~~~p~~~~~~~~~~~~~~~~vv~p~-----~dG~l~a~~~~~G~~~~~ 82 (339)
T 2be1_A 11 DILIAADVEGGLHAVDRRNGHIIWSIEP---ENFQPLIEIQEPSRLETYETLIIEPF-----GDGNIYYFNAHQGLQKLP 82 (339)
T ss_dssp EEEEEEETTSCEEEEETTTTEEEEEECG---GGSCCSEECCCSCTTTSSEEEEECCS-----TTTEEEEEETTTEEEEEE
T ss_pred CEEEEEeCCCeEEEEECCCCcEEEEecC---CccCCcEEecCCccccCCcEEEEEEC-----CCCEEEEEECCCCcEEee
Confidence 4788899999999999999999888875 3 22222110 0112233333 3 68999999876 544433
Q ss_pred eec-----CCCeEEEEEeeCC-------CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 461 LAS-----ELRITSVTFSNAP-------EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 461 ~~~-----~~~i~~i~~s~~p-------dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
... .+++.. .-.|.- .+ ..+++|+.+|.+...|+.+|+.+..+..
T Consensus 83 ~~~~~lv~~SP~~~-~~~pvv~~~~~~~~~---g~Vy~Gs~~g~l~ald~~tG~~~W~~~~ 139 (339)
T 2be1_A 83 LSIRQLVSTSPLHL-KTNIVVNDSGKIVED---EKVYTGSMRTIMYTINMLNGEIISAFGP 139 (339)
T ss_dssp EEHHHHHTTCSEEE-ECC----------CC---EEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred eccccceecccccc-CCCceeecccccccC---CEEEEEecCCEEEEEECCCCcEEEEEec
Confidence 321 122221 100001 33 6889999999999999999999999974
|
| >1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A | Back alignment and structure |
|---|
Probab=88.72 E-value=8.8 Score=39.51 Aligned_cols=111 Identities=12% Similarity=0.092 Sum_probs=59.8
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee--CCCccEEEEEEccC---CCEE-EEEcC---
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL--GHSACVTDLYLCAG---FSVA-VSSSE--- 395 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~--~h~~~V~~l~~s~~---~~~l-~sgs~--- 395 (556)
...+.++|.|+|+++++-...+.|++++...+. ..... .....+. .....+..|+++|+ +..| ++-+.
T Consensus 27 ~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~--~~~~~-~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~ 103 (454)
T 1cru_A 27 NKPHALLWGPDNQIWLTERATGKILRVNPESGS--VKTVF-QVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNP 103 (454)
T ss_dssp SSEEEEEECTTSCEEEEETTTCEEEEECTTTCC--EEEEE-ECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECT
T ss_pred CCceEEEEcCCCcEEEEEcCCCEEEEEECCCCc--EeEEe-cCCccccccCCCCceeEEEECCCcCcCCEEEEEEecccc
Confidence 346799999999877765443467776543221 00000 0000111 13466789999995 4444 44332
Q ss_pred ---------CCcEEEEeCCCC-------eEE-EEeCCCCCCCCeeEEEEeCCCCeEEEEee
Q psy10778 396 ---------DGTCLLWDINTI-------GYI-REIPCVDPNTPVSHVTMSETNGEIASVLQ 439 (556)
Q Consensus 396 ---------Dg~I~iwdl~~~-------~~v-~~l~~~h~~~~V~~l~~sp~~~~i~s~s~ 439 (556)
...|.-+++... +.+ ..+.... ......|+|.|+|.+.++.+.
T Consensus 104 ~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~-~H~~~~l~f~pDG~Lyv~~Gd 163 (454)
T 1cru_A 104 KSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSK-DHQSGRLVIGPDQKIYYTIGD 163 (454)
T ss_dssp TC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCS-SCCEEEEEECTTSCEEEEECC
T ss_pred CCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCC-CCCCCeEeECCCCeEEEEECC
Confidence 234555654321 112 2233201 345789999999987777653
|
| >3no0_A DNA gyrase subunit A; DNA topology, topoisomerase, C-terminal DO gyrase, DNA binding protein, isomerase; HET: DNA GOL; 1.30A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=86.69 E-value=22 Score=33.75 Aligned_cols=197 Identities=8% Similarity=0.011 Sum_probs=115.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEEEcCCCcEEEEe
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~sgs~Dg~I~iwd 403 (556)
+.+..+........|+.-+.+|.++--....-+.... .-+ +. ....|..+.... +...++..+.+|.++...
T Consensus 24 D~~~~~~~~~t~~~ll~fT~~G~v~~~~~~~lp~~~~----~~l--l~-~~e~i~~v~~~~~~~~~~v~~T~~G~iKr~~ 96 (276)
T 3no0_A 24 APVVNILRVPFTEGLFLVSNRGRVYWIAGSQALQGSK----VSL--KS-REEKIVGAFIREKFGNRLLLATKKGYVKKIP 96 (276)
T ss_dssp CCEEEEEEEETTSCEEEEETTSEEEEECSHHHHTSEE----CCC--SS-TTCCEEEEEEGGGSCSEEEEEETTSEEEEEE
T ss_pred CeEEEEEEECCCCEEEEEcCCCeEEEEEhhhCccCcc----ccc--CC-CCCEEEEEECCcCCCCEEEEEeCCCEEEEEE
Confidence 4555554444455666667778776433221110000 111 22 345566664422 467899999999999988
Q ss_pred CCCCe------EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC----------CcEEEEeecCCCe
Q psy10778 404 INTIG------YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN----------AQLITSLASELRI 467 (556)
Q Consensus 404 l~~~~------~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~----------g~~i~~~~~~~~i 467 (556)
+.... ....++. ...+..+........++..+ ..|.+..+... |.....+...+.|
T Consensus 97 l~~~~~~~~G~~~i~lke---gD~l~~~~~~~~~~~ill~T-----~~G~~~r~~~~eip~~gR~a~Gv~~i~L~~~d~v 168 (276)
T 3no0_A 97 LAEFEYKAQGMPIIKLTE---GDEVVSIASSVDETHILLFT-----KKGRVARFSVREVPPSTPGARGVQGIKLEKNDET 168 (276)
T ss_dssp GGGTTTCSTTEECSCCCT---TCCEEEEEECCSSCEEEEEE-----TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCE
T ss_pred HHHhhhhcCCeEEEecCC---CCEEEEEEEeCCCCEEEEEE-----CCCEEEEEEhhhCCCcCCCCCCEEEEccCCCCEE
Confidence 65431 1222333 45666666665666777777 78888887652 2222223345667
Q ss_pred EEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-------CCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEE--
Q psy10778 468 TSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-------KLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII-- 538 (556)
Q Consensus 468 ~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-------~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v-- 538 (556)
.++... +++ ..++..+..|.++...+. .++-+..+. ....+..+....+...++..+.+|.+..
T Consensus 169 v~~~~~--~~~---~~ll~~T~~G~~kr~~~~e~~~~~R~gkGv~~i~--~~~~lv~~~~~~~~~~i~~~t~~G~~ir~~ 241 (276)
T 3no0_A 169 SGLRIW--NGE---PYLLVITAKGRVKKISHEEIPKTNRGVKGTEVSG--TKDTLVDLIPIKEEVELLITTKNGKAFYDK 241 (276)
T ss_dssp EEEEEE--SSC---SEEEEEETTSCEEEEEGGGSCCCCTTCCCEECCC--SSSCEEEEEEESSEEEEEEEETTSCEEEEE
T ss_pred EEEEEe--CCC---CEEEEEeCCCcEEEeEHHHcccCCCCCcceEEEc--CCCcEEEEEEeCCCCEEEEEcCCCeEEEee
Confidence 776655 444 578888999998888752 233334443 2345666555444456777888898888
Q ss_pred EEcCC
Q psy10778 539 WESSS 543 (556)
Q Consensus 539 wdl~~ 543 (556)
++..+
T Consensus 242 ~~~~~ 246 (276)
T 3no0_A 242 INQKD 246 (276)
T ss_dssp EEGGG
T ss_pred eCHHH
Confidence 87655
|
| >2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A* | Back alignment and structure |
|---|
Probab=86.41 E-value=32 Score=37.39 Aligned_cols=200 Identities=12% Similarity=0.091 Sum_probs=99.9
Q ss_pred CCCCEEEEEeCC----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC------CcEEEEe
Q psy10778 334 PDCHTLWLGLTS----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED------GTCLLWD 403 (556)
Q Consensus 334 ~dg~~l~tgs~D----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D------g~I~iwd 403 (556)
.++..++.|+.+ ..+.+||..++........ .+...+......-.++.+..++.+++.|+.+ ..+.+||
T Consensus 396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~-~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd 474 (695)
T 2zwa_A 396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIE-VSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFD 474 (695)
T ss_dssp CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECC-CCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEE
T ss_pred ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccC-CCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEe
Confidence 466788888754 3577777765421100000 0000011111122233332267778887754 3578899
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEeec-------CCCeEEEEEeeCC
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLAS-------ELRITSVTFSNAP 476 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~~-------~~~i~~i~~s~~p 476 (556)
..+.+....-..+. ...-.+++...++..++.|+... .+.+.+||.....-..... .....++.+. .
T Consensus 475 ~~t~~W~~~~~~p~-~R~~h~~~~~~~~~iyv~GG~~~---~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~--~ 548 (695)
T 2zwa_A 475 MKTREWSMIKSLSH-TRFRHSACSLPDGNVLILGGVTE---GPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD--P 548 (695)
T ss_dssp TTTTEEEECCCCSB-CCBSCEEEECTTSCEEEECCBCS---SCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEE--T
T ss_pred CCCCcEEECCCCCC-CcccceEEEEcCCEEEEECCCCC---CCCEEEEECCCCceEEccCCCCCCCcccceeEEEEe--C
Confidence 98865433221101 11112233323667777776322 1278999987544333321 1122334445 3
Q ss_pred C-CCcceEEEEEeC--C-----CeEEEEeCCCCe--------EEEEecCCCCCCeEEEEEecCCCEEEEEcCC-------
Q psy10778 477 E-GVSQNVIVTGHS--D-----GTIQLWSGYKLA--------HLLTLNTNVALPVIAVTYSCDSQHLYASNTE------- 533 (556)
Q Consensus 477 d-g~~~~~l~tg~~--d-----g~I~iwd~~~~~--------~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D------- 533 (556)
. + ++++.|+. + ..+.+||+.+.+ .+........... +++...++++++.|+.+
T Consensus 549 ~~~---~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~-~~~~~~~~~iyv~GG~~~~~~~~~ 624 (695)
T 2zwa_A 549 VSK---QGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGS-QIKYITPRKLLIVGGTSPSGLFDR 624 (695)
T ss_dssp TTT---EEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSC-EEEEEETTEEEEECCBCSSCCCCT
T ss_pred CCC---EEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccc-eEEEeCCCEEEEECCccCCCCCCC
Confidence 3 5 68888875 2 468899987665 2222111111112 23334446777777743
Q ss_pred -CcEEEEEcCCC
Q psy10778 534 -GLVIIWESSSH 544 (556)
Q Consensus 534 -g~V~vwdl~~~ 544 (556)
..+.+||+.+.
T Consensus 625 ~~~v~~yd~~t~ 636 (695)
T 2zwa_A 625 TNSIISLDPLSE 636 (695)
T ss_dssp TTSEEEEETTTT
T ss_pred CCeEEEEECCCC
Confidence 46889998774
|
| >3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A | Back alignment and structure |
|---|
Probab=85.77 E-value=35 Score=35.98 Aligned_cols=230 Identities=11% Similarity=0.079 Sum_probs=128.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC------------------------CCCceE--EEEEc---CCCCEEEEEeC-
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP------------------------LGATIA--TATTA---PDCHTLWLGLT- 344 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~------------------------h~~~V~--~i~~s---~dg~~l~tgs~- 344 (556)
.+.+|+..|.|+|+-+-+.+.+..+..- ..+... .+++. -||++|+.-..
T Consensus 72 ~f~SgG~sG~v~v~G~PSmR~l~~IpVF~~~~~~G~G~t~esk~il~~~~~~~~gD~HHp~~S~tdg~yDGrylfiNdka 151 (638)
T 3sbq_A 72 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGLTNESRHIMGDSAKFLNGDCHHPHISMTDGKYDGKYLFINDKA 151 (638)
T ss_dssp EEEECGGGCCEEEEEETTTEEEEEECSSSCCTTTCTTTBHHHHHHHGGGGGCCCCCCCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEeecCcCceEEEEecCCcceEEEeecccCCCCcccCCchhHHHHHhcCCCccCCCcCCCcccccCCeeeeEEEEEecCC
Confidence 4778888999999887766544332210 011111 22222 25777877663
Q ss_pred CCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEc--cCCCEEEEEcC-------CCcE------------EEE
Q psy10778 345 SGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLC--AGFSVAVSSSE-------DGTC------------LLW 402 (556)
Q Consensus 345 Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s--~~~~~l~sgs~-------Dg~I------------~iw 402 (556)
+..|-..+++.. ++.+.+. -....+.++++- |...+++.+++ ||.. ...
T Consensus 152 n~RvAri~l~~~---------~~d~Ii~iPn~~~~Hg~~~~~~p~T~yv~~~~e~~~P~pndg~~~~~~~~~~y~~f~~i 222 (638)
T 3sbq_A 152 NSRVARIRLDIM---------KCDKMITVPNVQAIHGLRLQKVPHTKYVFANAEFIIPHPNDGKVFDLQDENSYTMYNAI 222 (638)
T ss_dssp TTEEEEEETTTT---------EEEEEEECTTCSCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCTTSTTEEEEEEEE
T ss_pred CcceEEEECCcE---------eeceeEeCCCCcCcccccccccCCccEEEecceeeccCCCCCcccccCChhhceEEEEE
Confidence 344555555443 1112222 244567777775 56667776654 3331 112
Q ss_pred eCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC----------cCCCC-------------------------e
Q psy10778 403 DINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT----------KTGGS-------------------------I 447 (556)
Q Consensus 403 dl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~----------~~~d~-------------------------~ 447 (556)
|..+.+...++.- .+....+...+++++.++.|.+. .++.. .
T Consensus 223 D~~tm~v~~Qv~v---~gnld~~~~~~~g~~af~t~yNsE~~~~l~em~~~e~D~~~vfn~~~ie~~vk~G~~~~~~g~g 299 (638)
T 3sbq_A 223 DAETMEMAFQVIV---DGNLDNTDADYTGRFAAATCYNSEKAFDLGGMMRNERDWVVVFDIHAVEAAVKAGDFITLGDSK 299 (638)
T ss_dssp ETTTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSCEEEEEEEHHHHHHHHHTTCCBCCTTCC
T ss_pred cCCccEEEEEEEc---CCChhhcCCCCCCCEEEEeeeccccCcChhhcCcccccEEEEecHHHHHHHHhcCCeEEECCCC
Confidence 3333333222222 22334455677888888888755 11112 2
Q ss_pred EEEEEeCC------cEEEEeecCCCeEEEEEeeCCCCCcceEEEE-EeCCCeEEEEeCCCC------e-------EEEEe
Q psy10778 448 LRLHTINA------QLITSLASELRITSVTFSNAPEGVSQNVIVT-GHSDGTIQLWSGYKL------A-------HLLTL 507 (556)
Q Consensus 448 I~iwdi~g------~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~t-g~~dg~I~iwd~~~~------~-------~~~~~ 507 (556)
+.+.|.+. ..+..+........+..+ ||| +++++ |-.+.++.++|.... + .+...
T Consensus 300 v~ViD~~~~~~~~~~~~~~iP~pksPHGv~vs--PDG---kyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~ 374 (638)
T 3sbq_A 300 TPVLDGRKKDGKDSKFTRYVPVPKNPHGCNTS--SDG---KYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEP 374 (638)
T ss_dssp CCEEECSCBTTBCCSSEEEEEESSSCCCEEEC--TTS---CEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECC
T ss_pred eeEEccccccccCCceEEEEeCCCCCcceeeC--CCC---CEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeec
Confidence 44444432 122333344556677888 899 55554 557889999998632 1 24444
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
. ..-.....+|+++|....+.--|..|.-|++..
T Consensus 375 e--~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni~~ 408 (638)
T 3sbq_A 375 E--LGLGPLHTTFDGRGNAYTTLFIDSQVVKWNMEE 408 (638)
T ss_dssp B--CCSCEEEEEECSSSEEEEEETTTTEEEEEEHHH
T ss_pred c--CCCcccEEEECCCCceEeeeeecceEEEEeccH
Confidence 4 245678899999995555666899999999866
|
| >1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A* | Back alignment and structure |
|---|
Probab=83.73 E-value=23 Score=32.67 Aligned_cols=138 Identities=8% Similarity=-0.100 Sum_probs=76.0
Q ss_pred CCEEEEEcCCCcEEEEeCCCCe------EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-----
Q psy10778 387 FSVAVSSSEDGTCLLWDINTIG------YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA----- 455 (556)
Q Consensus 387 ~~~l~sgs~Dg~I~iwdl~~~~------~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g----- 455 (556)
..+|....+| +++.=...++. ...++-... -..++.++++|++...++ . ++.++-.+...
T Consensus 4 ~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~g-w~~~~~laf~P~G~LYaV-~------~G~Ly~~~~~t~~~~~ 74 (236)
T 1tl2_A 4 ESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGG-WSNFKFLFLSPGGELYGV-L------NDKIYKGTPPTHDNDN 74 (236)
T ss_dssp CCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSS-CTTCSEEEECTTSCEEEE-E------TTEEEEESCCCSTTCC
T ss_pred ceEEEEEeCC-cEEecCCCCCcccchhhhccccCccc-cccceeEEECCCccEEEE-e------CCeEEEECCCCCCccc
Confidence 3455666666 66655554433 122322101 256789999998776665 4 45665555421
Q ss_pred --cEEEEeec--CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE------EEEecCCCCCCeEEEEEecCCC
Q psy10778 456 --QLITSLAS--ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH------LLTLNTNVALPVIAVTYSCDSQ 525 (556)
Q Consensus 456 --~~i~~~~~--~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~------~~~~~~~h~~~V~~l~~s~dg~ 525 (556)
..-..+.. -....++.|. ++| .+.++ .||.|+-++-.+... -..+...-=..+..|.+.|+|.
T Consensus 75 W~~s~t~IG~~Gw~~F~a~~fD--~~G---~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~ 147 (236)
T 1tl2_A 75 WMGRAKKIGNGGWNQFQFLFFD--PNG---YLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGY 147 (236)
T ss_dssp HHHHCEEEECSCGGGCSEEEEC--TTS---CEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSC
T ss_pred ccccccEecccccccceEEEEC--CCC---CEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCce
Confidence 11111111 1124678888 898 56665 569998887633110 0111111125689999999997
Q ss_pred EEEEEcCCCcEEEEEcC
Q psy10778 526 HLYASNTEGLVIIWESS 542 (556)
Q Consensus 526 ~l~sgs~Dg~V~vwdl~ 542 (556)
+.++. ||.++-+..+
T Consensus 148 Lyav~--dg~lyr~~~P 162 (236)
T 1tl2_A 148 LYAVH--GQQFYKALPP 162 (236)
T ss_dssp EEEEE--TTEEEEECCC
T ss_pred EEEEe--CCcEEecCCC
Confidence 76665 8876544333
|
| >2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=82.51 E-value=27 Score=33.96 Aligned_cols=56 Identities=7% Similarity=-0.076 Sum_probs=27.4
Q ss_pred eEEEEEeCCc---EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCC------eEEEEeCCCCeEEEEec
Q psy10778 447 ILRLHTINAQ---LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDG------TIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 447 ~I~iwdi~g~---~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg------~I~iwd~~~~~~~~~~~ 508 (556)
.+.+||+... .+..+.....-.+++.. ++ ++++.|+.++ .|.++++.+++.+....
T Consensus 286 ~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~---~~---~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 286 STDIHLWHNGKWDKSGELSQGRAYGVSLPW---NN---SLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp CCEEEECC---CEEEEECSSCCBSSEEEEE---TT---EEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred eEEEEecCCCceeeCCCCCCCcccceeEEe---CC---EEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 5778888632 22222222111222222 45 7888888543 35556777776655543
|
| >3qhy_B Beta-lactamase inhibitory protein II; enyzme-inhibitor complex, beta-propeller, protein:protein interaction; 2.06A {Streptomyces exfoliatus} PDB: 3qi0_A 1jtd_B | Back alignment and structure |
|---|
Probab=82.14 E-value=11 Score=35.89 Aligned_cols=183 Identities=15% Similarity=0.161 Sum_probs=93.5
Q ss_pred CceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10778 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
..|..++.... ..++. . ||.|..|-.....+.+.. . .....|..++.......++ . ||.|..|-.
T Consensus 24 ~~i~~ia~G~~-h~~~l-~-~G~v~~wG~n~~Gqlg~p-----~----~~~~~i~~ia~G~~hs~~l--~-~G~v~~wG~ 88 (282)
T 3qhy_B 24 SGVDAIAGGYF-HGLAL-K-GGKVLGWGANLNGQLTMP-----A----ATQSGVDAIAAGNYHSLAL--K-DGEVIAWGG 88 (282)
T ss_dssp SSCCEEEECSS-EEEEE-E-TTEEEEEECCSSSTTSCC-----G----GGGSCCCEEEECSSEEEEE--E-TTEEEEEEC
T ss_pred CCCcEEEeCCC-eEEEE-E-CCEEEEEeCCCCCCCCCC-----c----cCCCCEEEEEeCCCEEEEE--E-CCEEEEeeC
Confidence 35777776543 33333 4 899999986644222211 1 1123566666654433333 4 899999976
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcce
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQN 482 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~ 482 (556)
.....+- ++..- ...|..++.......+++ ++.|+.|-.+ |++-........|..++.. .. .
T Consensus 89 n~~Gqlg-~P~~~-~~~v~~ia~G~~hs~al~--------~G~v~~wG~n~~gqlg~~~~~~~~i~~i~~G--~~----~ 152 (282)
T 3qhy_B 89 NEDGQTT-VPAEA-RSGVDAIAAGAWASYALK--------DGKVIAWGDDSDGQTTVPAEAQSGVTALDGG--VY----T 152 (282)
T ss_dssp CTTSTTC-CCGGG-SSSEEEEEEETTEEEEEE--------TTEEEEEECCTTSTTSCCGGGGSSEEEEEEC--SS----E
T ss_pred CCCCCCC-CCccc-CCCeEEEECcCCEEEEEe--------CCeEEEecCCCCCcCCCCccCCCCeEEEEcc--cC----E
Confidence 5421111 01001 235666665543222222 4677777654 3321111234567777655 22 3
Q ss_pred EEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 483 VIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 483 ~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.++. . ||.|+.|-......+..-. .....|..++-..+. .++- .||.|+.|-....
T Consensus 153 ~~~l-~-~G~v~~wG~n~~gqlg~p~-~~~~~v~~i~~G~~h--s~al-~~G~v~~wG~n~~ 208 (282)
T 3qhy_B 153 ALAV-K-NGGVIAWGDNYFGQTTVPA-EAQSGVDDVAGGIFH--SLAL-KDGKVIAWGDNRY 208 (282)
T ss_dssp EEEE-E-TTEEEEEECCTTSTTSCCG-GGGSSEEEEEECSSE--EEEE-ETTEEEEEECCTT
T ss_pred EEEE-E-CCEEEEecCCCCCCCCCce-ecCCCeEEEEecCCE--EEEE-ECCeEEEEECCCC
Confidence 3333 3 7999999764322111111 113567777765433 3333 5999999987663
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=81.94 E-value=40 Score=32.85 Aligned_cols=196 Identities=11% Similarity=0.074 Sum_probs=101.1
Q ss_pred CCCceEEEEEcC---CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcE
Q psy10778 323 LGATIATATTAP---DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTC 399 (556)
Q Consensus 323 h~~~V~~i~~s~---dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I 399 (556)
....|.++...+ +..++++++.+|.++--.+..-..... .......+.. .+.+..+........++..+..|.+
T Consensus 93 ~~e~i~~~~~~~~~~~e~~~v~~T~~G~iKr~~l~~~~~~~r--~G~~~i~lke-~D~lv~~~~~~~~d~ill~T~~G~~ 169 (327)
T 3uc1_A 93 PEERIAQVIQIRGYTDAPYLVLATRNGLVKKSKLTDFDSNRS--GGIVAVNLRD-NDELVGAVLCSAGDDLLLVSANGQS 169 (327)
T ss_dssp TTCCEEEEEEESSTTSSSEEEEEETTSEEEEEEGGGGCCCCS--SCEESCBCCT-TCCEEEEEEECTTCEEEEEETTSEE
T ss_pred CCCEEEEEEEeccCCCCCEEEEEcCCCEEEEeEHHHhhcccc--CceEEEEECC-CCEEEEEEEecCCCEEEEEECCCeE
Confidence 345566654433 468999999999999877654311110 0001112333 3455555555555677778889998
Q ss_pred EEEeCC--CC---------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--------CcEEEE
Q psy10778 400 LLWDIN--TI---------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--------AQLITS 460 (556)
Q Consensus 400 ~iwdl~--~~---------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--------g~~i~~ 460 (556)
..+... .- .....+.. ...|.++...+++..++.++ ..|.++.-.+. ++-+..
T Consensus 170 ~rf~~~~~eip~~gr~a~Gv~~i~L~~---~d~Vv~~~~~~~~~~ll~~T-----~~G~~Krt~l~e~~~~~R~~~G~~~ 241 (327)
T 3uc1_A 170 IRFSATDEALRPMGRATSGVQGMRFNI---DDRLLSLNVVREGTYLLVAT-----SGGYAKRTAIEEYPVQGRGGKGVLT 241 (327)
T ss_dssp EEEECCTTTSCCCCTTSBCEESSCCCT---TCCEEEEEECCTTCEEEEEE-----TTSEEEEEEGGGSCBCCTTSCCEES
T ss_pred EEEECcccccCcCCcCCCCeeeecCCC---CCEEEEEEEECCCCEEEEEe-----CCCcEEEEEHHHccccCcCCCcEEE
Confidence 888766 31 11112332 45677776666667788888 78888887752 122222
Q ss_pred ee--c-CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------CeEEEEecCCCCCCeEEEEEecC-CCEEEE
Q psy10778 461 LA--S-ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------LAHLLTLNTNVALPVIAVTYSCD-SQHLYA 529 (556)
Q Consensus 461 ~~--~-~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------~~~~~~~~~~h~~~V~~l~~s~d-g~~l~s 529 (556)
++ . .+.+..+... .+. ..++..+.+|.+.-++... .+-++.+.......|.+++..+. ...+.+
T Consensus 242 ~~l~~~~d~lv~~~~~--~~~---~~i~l~T~~G~~ir~~~~~i~~~gR~a~GV~~i~l~~~d~vv~~~~~~~~~~~~~~ 316 (327)
T 3uc1_A 242 VMYDRRRGRLVGALIV--DDD---SELYAVTSGGGVIRTAARQVRKAGRQTKGVRLMNLGEGDTLLAIARNAEESGDDNA 316 (327)
T ss_dssp SCCCTTTCSEEEEEEE--CTT---CEEEEEEGGGCEEEEEGGGSCBCCTTSCCEECTTCCTTCCEEEEEECC--------
T ss_pred EEecCCCCeEEEEEEe--CCC---ccEEEEcCCCeEEEEehhhccccCCCCCCeEeEecCCCCEEEEEEEcCCCcceEEE
Confidence 22 1 3455555444 223 3555566667666665422 12233333223456666665543 344555
Q ss_pred EcCCC
Q psy10778 530 SNTEG 534 (556)
Q Consensus 530 gs~Dg 534 (556)
.+++|
T Consensus 317 ~~~~g 321 (327)
T 3uc1_A 317 VDANG 321 (327)
T ss_dssp -----
T ss_pred EecCC
Confidence 55554
|
| >3uc1_A DNA gyrase subunit A; DNA binding protein, topoisomerase, isomerase; HET: DNA; 1.65A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=81.18 E-value=42 Score=32.66 Aligned_cols=205 Identities=11% Similarity=0.040 Sum_probs=116.6
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEee---eccC--cccccccCCCeEeeCCCccEEEEEEcc---CCCEEEEEc
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYE---LNAS--TNKIEFCKPPTILLGHSACVTDLYLCA---GFSVAVSSS 394 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~---~~~~--~~~~~~~~~~~~l~~h~~~V~~l~~s~---~~~~l~sgs 394 (556)
..+.+..+........|+.-+..|.++-.... .... .+..+ ...-.+. ....|.++..-. +...++.++
T Consensus 40 e~D~~~~~~~~~t~d~ll~fT~~Gr~y~~~~~~lp~~~r~~~G~~i--~~~l~l~-~~e~i~~~~~~~~~~~e~~~v~~T 116 (327)
T 3uc1_A 40 QDDIVAHFFVCSTHDLILFFTTQGRVYRAKAYDLPEASRTARGQHV--ANLLAFQ-PEERIAQVIQIRGYTDAPYLVLAT 116 (327)
T ss_dssp GGGCEEEEEEEETTSEEEEEETTSEEEEEEGGGSCBCCSSSCCEEH--HHHTTCC-TTCCEEEEEEESSTTSSSEEEEEE
T ss_pred CCCEEEEEEEeCCCCEEEEEeCCCeEEEEEHHHCcCCCccCCCEEH--HHccCCC-CCCEEEEEEEeccCCCCCEEEEEc
Confidence 34556666555556677777777876654432 2110 11110 0000122 234455554433 467999999
Q ss_pred CCCcEEEEeCCCCe-------EEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--C----------
Q psy10778 395 EDGTCLLWDINTIG-------YIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--A---------- 455 (556)
Q Consensus 395 ~Dg~I~iwdl~~~~-------~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g---------- 455 (556)
.+|.++.-.+.... ....++. ...+..+........|+..+ ..|.+..+... .
T Consensus 117 ~~G~iKr~~l~~~~~~~r~G~~~i~lke---~D~lv~~~~~~~~d~ill~T-----~~G~~~rf~~~~~eip~~gr~a~G 188 (327)
T 3uc1_A 117 RNGLVKKSKLTDFDSNRSGGIVAVNLRD---NDELVGAVLCSAGDDLLLVS-----ANGQSIRFSATDEALRPMGRATSG 188 (327)
T ss_dssp TTSEEEEEEGGGGCCCCSSCEESCBCCT---TCCEEEEEEECTTCEEEEEE-----TTSEEEEEECCTTTSCCCCTTSBC
T ss_pred CCCEEEEeEHHHhhccccCceEEEEECC---CCEEEEEEEecCCCEEEEEE-----CCCeEEEEECcccccCcCCcCCCC
Confidence 99999998765422 1223333 45566666555666777777 67877766543 1
Q ss_pred cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC-------CeEEEEecC-CCCCCeEEEEEecCCCEE
Q psy10778 456 QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK-------LAHLLTLNT-NVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 456 ~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~-------~~~~~~~~~-~h~~~V~~l~~s~dg~~l 527 (556)
...-.+.....|.++... +++ ..+++.+..|.++.-.+.. ++-+..+.. .-...+..+....+...+
T Consensus 189 v~~i~L~~~d~Vv~~~~~--~~~---~~ll~~T~~G~~Krt~l~e~~~~~R~~~G~~~~~l~~~~d~lv~~~~~~~~~~i 263 (327)
T 3uc1_A 189 VQGMRFNIDDRLLSLNVV--REG---TYLLVATSGGYAKRTAIEEYPVQGRGGKGVLTVMYDRRRGRLVGALIVDDDSEL 263 (327)
T ss_dssp EESSCCCTTCCEEEEEEC--CTT---CEEEEEETTSEEEEEEGGGSCBCCTTSCCEESSCCCTTTCSEEEEEEECTTCEE
T ss_pred eeeecCCCCCEEEEEEEE--CCC---CEEEEEeCCCcEEEEEHHHccccCcCCCcEEEEEecCCCCeEEEEEEeCCCccE
Confidence 111122335667777665 444 5888999999998876522 223333332 113456666555555677
Q ss_pred EEEcCCCcEEEEEcCC
Q psy10778 528 YASNTEGLVIIWESSS 543 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~ 543 (556)
+..+.+|.+.-+....
T Consensus 264 ~l~T~~G~~ir~~~~~ 279 (327)
T 3uc1_A 264 YAVTSGGGVIRTAARQ 279 (327)
T ss_dssp EEEEGGGCEEEEEGGG
T ss_pred EEEcCCCeEEEEehhh
Confidence 7788888888887654
|
| >1zi0_A DNA gyrase subunit A; beta pinwheel, topoisomerase, spiralling beta pinwheel, DNA wrapping, isomerase, DNA bindng protein; HET: DNA; 2.60A {Escherichia coli} | Back alignment and structure |
|---|
Probab=80.47 E-value=43 Score=32.25 Aligned_cols=235 Identities=9% Similarity=0.017 Sum_probs=122.8
Q ss_pred eEEeccCCCeEEEEeCCCCC-------CcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCC
Q psy10778 295 MICWNECDNLIRLKMSKELP-------ATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~-------~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
+++.-+.+|.|+--.+.+-+ ....+.....+.+..+........|+..+..|.+.-.....-+..+......+
T Consensus 5 ~~v~~T~~G~iKr~~~~~~~~~~~~~~g~~~~~~ke~D~l~~~~~~~~~~~ll~fT~~G~~~~~~~~elp~~~~~a~G~~ 84 (307)
T 1zi0_A 5 VVVTLSHQGYVKYQPLSEYEAQRRGGKGKSAARIKEEDFIDRLLVANTHDHILCFSSRGRVYSMKVYQLPEATRGARGRP 84 (307)
T ss_dssp EEEEEETTSEEEEEECC--------------------CCEEEEEEEETTCEEEEEETTSEEEEEEGGGSCCCCSSSCCEE
T ss_pred EEEEEeCCCEEEEeeHHHhhhhccCCCCceeeeeCCCCEEEEEEEECCCCEEEEEECCCEEEEEEhhHCcCCCCCCCCeE
Confidence 44555677777655443211 11111112334555555455556777778888876655432111111000010
Q ss_pred C---eEeeCCCccEEEEEEc---cCCCEEEEEcCCCcEEEEeCCCC-----eEEE--EeCCCCCCCCeeEEEEeCCCCeE
Q psy10778 368 P---TILLGHSACVTDLYLC---AGFSVAVSSSEDGTCLLWDINTI-----GYIR--EIPCVDPNTPVSHVTMSETNGEI 434 (556)
Q Consensus 368 ~---~~l~~h~~~V~~l~~s---~~~~~l~sgs~Dg~I~iwdl~~~-----~~v~--~l~~~h~~~~V~~l~~sp~~~~i 434 (556)
+ -.+. ....|.++..- .+...++..+..|.++.-.+... .-+. .+.. ...+..+........+
T Consensus 85 i~~~l~l~-~~e~i~~~~~~~~~~~~~~ll~~T~~G~~Krt~l~e~~~~~r~G~~~i~l~~---~d~lv~~~~~~~~~~i 160 (307)
T 1zi0_A 85 IVNLLPLE-QDERITAILPVTEFEEGVKVFMATANGTVKKTVLTEFNRLRTAGKVAIKLVD---GDELIGVDLTSGEDEV 160 (307)
T ss_dssp GGGTSCCC-TTCCEEEEEEESCCCTTCEEEEEETTSEEEEEEGGGGTTCCTTCEESSCCCT---TCCEEEEEEECTTCEE
T ss_pred hhhccCCC-CCCEEEEEEEeccCCCCcEEEEEeCCCeEEEEEHHHhhccccCCeEEEEECC---CCEEEEEEEeCCCCEE
Confidence 0 1122 23445555432 34567889999999999876421 1122 2333 3455555555555667
Q ss_pred EEEeecCcCCCCeEEEEEeC-----C-----cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----
Q psy10778 435 ASVLQTTKTGGSILRLHTIN-----A-----QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK---- 500 (556)
Q Consensus 435 ~s~s~~~~~~d~~I~iwdi~-----g-----~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~---- 500 (556)
+..+ ..|.+..+... | ...-.+...+.|.++... .++ ..+++.+..|.++-.++..
T Consensus 161 ~l~T-----~~G~~irf~~~~v~~~gr~a~Gv~~i~L~~~d~Vv~~~~~--~~~---~~ll~~T~~G~~Kr~~~~e~~~~ 230 (307)
T 1zi0_A 161 MLFS-----AEGKVVRFKESSVRAMGCNTTGVRGIRLGEGDKVVSLIVP--RGD---GAILTATQNGYGKRTAVAEYPTK 230 (307)
T ss_dssp EEEE-----TTSEEEEEEGGGSCBCCTTCCCEECCCCCTTCCEEEEECC--CSS---CEEEEEETTSEEEEECGGGSCCC
T ss_pred EEEC-----CCCcEEEEEHHHcCccCCCCCCeEeEEeCCCCEEEEEEEe--cCC---CEEEEEEcCCceEEEEHHHhccC
Confidence 6666 67887777652 1 111223345677777654 444 5688889999998887622
Q ss_pred ---CeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 501 ---LAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 501 ---~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
++-+..+.. .....+..+....+...++..+.+|.+.-..+..
T Consensus 231 ~Rg~kG~~~~~~~~~~~~lv~~~~v~~~~~l~~~t~~g~~ir~~~~~ 277 (307)
T 1zi0_A 231 SRATKGVISIKVTERNGLVVGAVQVDDCDQIMMITDAGTLVRTRVSE 277 (307)
T ss_dssp CTTSCCEESSCCCTTTCSEEEEEEECTTCEEEEEESSCCEEEEEGGG
T ss_pred CCCCCCEEeeEecCCCCeEEEEEEeCCCceEEEEcCCCcEEEEeccc
Confidence 121222221 1235566655544556667778888887777655
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 556 | ||||
| d1t77a1 | 304 | a.169.1.1 (A:2186-2489) Lipopolysaccharide-respons | 2e-84 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-08 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 0.002 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 8e-08 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 0.003 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 9e-06 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 8e-05 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 2e-04 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 3e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 5e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 0.001 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} Length = 304 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Score = 263 bits (672), Expect = 2e-84
Identities = 93/194 (47%), Positives = 123/194 (63%), Gaps = 2/194 (1%)
Query: 9 NQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSES 68
+HYG+HYS + VL +L+RI PFT+ FLN Q FD DRTF +++ WR S
Sbjct: 110 QVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWR-NSQRD 168
Query: 69 TTDVKELIPELFYLADILVNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLES 128
T+D+KELIPE +YL ++ VN ++ GV +G V V LPPWA F+ ++R +LES
Sbjct: 169 TSDIKELIPEFYYLPEMFVNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALES 228
Query: 129 ELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYGF-DIAAIPDPLERTAWETMIRT 187
E VS L WIDL+FGYKQ G AV A+NVF+ TY G ++ +I DP+ R A E IR+
Sbjct: 229 EFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEGAVNLNSITDPVLREAVEAQIRS 288
Query: 188 YGQTPRQLFKSAHP 201
+GQTP QL HP
Sbjct: 289 FGQTPSQLLIEPHP 302
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 54.4 bits (129), Expect = 2e-08
Identities = 18/133 (13%), Positives = 48/133 (36%), Gaps = 10/133 (7%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHV 425
GH + + + + + S+D TC L+D+ + + ++ V
Sbjct: 217 MCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSV 276
Query: 426 TMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPEGVSQNVI 484
+ S++ + + + + A L + R++ + + +G +
Sbjct: 277 SFSKSGRLLLA----GYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVT--DDG---MAV 327
Query: 485 VTGHSDGTIQLWS 497
TG D +++W+
Sbjct: 328 ATGSWDSFLKIWN 340
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 52.8 bits (125), Expect = 4e-08
Identities = 28/166 (16%), Positives = 53/166 (31%), Gaps = 9/166 (5%)
Query: 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE 433
H+ V L L + VS + D + LWD+ + + ++ +
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFT--GHESDINAICFFPNGNA 240
Query: 434 IASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTI 493
A+ T + ITSV+FS S +++ G+ D
Sbjct: 241 FATGSDD-ATCRLFDLRADQELMTYSHDNIICGITSVSFSK-----SGRLLLAGYDDFNC 294
Query: 494 QLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIW 539
+W K L + V + + D + + + + IW
Sbjct: 295 NVWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 37.8 bits (86), Expect = 0.002
Identities = 13/79 (16%), Positives = 24/79 (30%), Gaps = 9/79 (11%)
Query: 325 ATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLC 384
I + + + L G N V++ +L GH V+ L +
Sbjct: 271 CGITSVSFSKSGRLLLAGYDDFNCNVWD---------ALKADRAGVLAGHDNRVSCLGVT 321
Query: 385 AGFSVAVSSSEDGTCLLWD 403
+ S D +W+
Sbjct: 322 DDGMAVATGSWDSFLKIWN 340
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 52.1 bits (123), Expect = 8e-08
Identities = 31/194 (15%), Positives = 66/194 (34%), Gaps = 21/194 (10%)
Query: 362 IEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP------- 414
++ GH V + ++ S S D T +W + T E+
Sbjct: 130 VQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVE 189
Query: 415 CVDPNTPVSHVTMSETNGEIASV-------LQTTKTGGSILRLHTINAQLITSL-ASELR 466
C+ S+ ++SE G L + +I + +L +
Sbjct: 190 CISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNW 249
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526
+ V F + I++ D T+++W + TLN + V ++ + + +
Sbjct: 250 VRGVLFHS-----GGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPY 303
Query: 527 LYASNTEGLVIIWE 540
+ + + V +WE
Sbjct: 304 VVTGSVDQTVKVWE 317
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 37.8 bits (86), Expect = 0.003
Identities = 34/180 (18%), Positives = 63/180 (35%), Gaps = 11/180 (6%)
Query: 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSET 430
L GH + VT + FSV VS+SED T +WD T + R + V ++ +
Sbjct: 13 LSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKG--HTDSVQDISFDHS 70
Query: 431 NGEIASVLQTTKTGGSILRLHTINAQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSD 490
+AS + + S+ + + IV+ D
Sbjct: 71 GKLLASCSADMTIKLWDFQGFECIRTMHG--------HDHNVSSVSIMPNGDHIVSASRD 122
Query: 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550
TI++W + T + V V + D + + + + V +W ++ +
Sbjct: 123 KTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAEL 181
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 45.6 bits (106), Expect = 9e-06
Identities = 31/174 (17%), Positives = 53/174 (30%), Gaps = 14/174 (8%)
Query: 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS 393
D + G + V++ E +++ GH V + VS
Sbjct: 215 GDGKYIAAGSLDRAVRVWDSETGFLVERLD--SENESGTGHKDSVYSVVFTRDGQSVVSG 272
Query: 394 SEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASV--------LQTTKTGG 445
S D + LW++ PN+ VT + SV + +
Sbjct: 273 SLDRSVKLWNLQNANNKS--DSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDR 330
Query: 446 SILRLHTINAQLITSL-ASELRITSVTFSNAPE-GVSQNVIVTGHSDGTIQLWS 497
+L + + L + SV +N G NV TG D ++W
Sbjct: 331 GVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWK 384
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.5 bits (98), Expect = 8e-05
Identities = 22/174 (12%), Positives = 52/174 (29%), Gaps = 20/174 (11%)
Query: 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI-----------GYIREIPCVD 417
H A + + C F VS S DG +WD + ++ +
Sbjct: 8 NAGKAHDADIFSVSACNSF--TVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHH 65
Query: 418 PNTPVSHVTMSETNGEIASV-------LQTTKTGGSILRLHTINAQLITSLASELRITSV 470
+ + + +A+ ++ L+ S + ++
Sbjct: 66 VDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWAL 125
Query: 471 TFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524
+ + + + + +V GT +W + A T P + + + +S
Sbjct: 126 KWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVES 179
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.4 bits (95), Expect = 2e-04
Identities = 26/109 (23%), Positives = 36/109 (33%), Gaps = 5/109 (4%)
Query: 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYE 354
++ DN IRL ++ +R G D + G G I V++
Sbjct: 190 LVVSGSSDNTIRLW---DIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLV 246
Query: 355 LNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403
L+ HS V L VSSS D T L+WD
Sbjct: 247 AALDPRAPAGTLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIWD 293
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.6 bits (93), Expect = 3e-04
Identities = 12/81 (14%), Positives = 28/81 (34%), Gaps = 8/81 (9%)
Query: 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLW--SGYKLAHLLTLNTNVALPVIAVTYSCDS 524
I+ ++ + I ++ + ++ SG K + L + V V ++ DS
Sbjct: 10 ISCHAWN--KDR---TQIAICPNNHEVHIYEKSGNKWVQVHELKEHNG-QVTGVDWAPDS 63
Query: 525 QHLYASNTEGLVIIWESSSHN 545
+ T+ +W
Sbjct: 64 NRIVTCGTDRNAYVWTLKGRT 84
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.8 bits (91), Expect = 5e-04
Identities = 8/59 (13%), Positives = 21/59 (35%), Gaps = 2/59 (3%)
Query: 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540
V+ D + W A + + V++ S D +++ + + ++E
Sbjct: 278 KWFVSTGKDNLLNAWRTPYGASIFQSKES--SSVLSCDISVDDKYIVTGSGDKKATVYE 334
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 38.8 bits (88), Expect = 0.001
Identities = 8/41 (19%), Positives = 17/41 (41%), Gaps = 4/41 (9%)
Query: 366 KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINT 406
+ + GH+ +T + +S S DG + W ++
Sbjct: 4 EVLKTISGHNKGIT----ALTVNPLISGSYDGRIMEWSSSS 40
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 556 | |||
| d1t77a1 | 304 | Lipopolysaccharide-responsive and beige-like ancho | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.98 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.98 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.97 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 99.97 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.97 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.97 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 99.96 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 99.95 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.95 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 99.95 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.95 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.94 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.94 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.94 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.92 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.92 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 99.92 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.92 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 99.91 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 99.9 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.9 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.9 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 99.89 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.86 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.86 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.86 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.85 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.83 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.8 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.78 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.76 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.72 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.67 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.66 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.65 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.6 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.59 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.55 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.54 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.39 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.37 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.33 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.28 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.26 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.11 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.03 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.01 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 98.97 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.87 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.76 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.75 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 98.71 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.68 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.67 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.62 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.62 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.59 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.4 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.36 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.35 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.31 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.28 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.27 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 98.24 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.99 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 97.92 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 97.58 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.57 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 97.4 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.27 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 97.24 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 97.09 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 96.69 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.66 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 96.61 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 96.41 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 96.11 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.97 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.96 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 95.8 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 95.46 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 95.43 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 94.64 | |
| d1ijqa1 | 266 | Low density lipoprotein (LDL) receptor {Human (Hom | 94.61 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 94.17 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 93.83 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 93.57 | |
| d1flga_ | 582 | Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax | 92.64 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 92.56 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 91.67 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 91.57 | |
| d1zgka1 | 288 | Kelch-like ECH-associated protein 1, KEAP1 {Human | 90.39 | |
| d1v04a_ | 340 | Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory | 90.06 | |
| d1qfma1 | 430 | Prolyl oligopeptidase, N-terminal domain {Pig (Sus | 89.19 | |
| d1h6la_ | 353 | Thermostable phytase (3-phytase) {Bacillus amyloli | 89.19 | |
| d1xipa_ | 381 | Nucleoporin NUP159 {Baker's yeast (Saccharomyces c | 84.98 | |
| d1jtdb_ | 273 | beta-lactamase inhibitor protein-II, BLIP-II {Stre | 83.24 | |
| d2hu7a1 | 313 | Acylamino-acid-releasing enzyme, N-terminal donain | 83.18 |
| >d1t77a1 a.169.1.1 (A:2186-2489) Lipopolysaccharide-responsive and beige-like anchor protein LRBA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: BEACH domain superfamily: BEACH domain family: BEACH domain domain: Lipopolysaccharide-responsive and beige-like anchor protein LRBA species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.6e-75 Score=562.94 Aligned_cols=196 Identities=47% Similarity=0.861 Sum_probs=189.7
Q ss_pred CCCCCCcccCCCCCChHHHHhcccCCcccchhhhhcccCCCcCCCCccccHHHHHHHhccCCcCccccccccccccCcce
Q psy10778 7 GVNQEPYHYGSHYSNSGTVLHFLVRIPPFTSMFLNYQDNNFDLPDRTFHNLATTWRLTSSESTTDVKELIPELFYLADIL 86 (556)
Q Consensus 7 ~~~~~~~~~~~~~s~~~~v~~~l~r~~pf~~~~~~~~~~~~d~~~r~f~~~~~~~~~~~~~~~~~~~e~~pef~~~~~~~ 86 (556)
+...++||||+|||++++|++||+|+||||++++.+|+|+||+|||+|+||+++|+++. .+++|++|||||||++||||
T Consensus 108 ~~~~~~~~y~s~yS~~~~V~~~L~R~ePft~l~~~lq~g~fD~~~R~F~si~~~~~~~~-~~~~d~~EliPEFf~~Pe~f 186 (304)
T d1t77a1 108 DDQVPKFHYGTHYSTASFVLAWLLRIEPFTTYFLNLQGGKFDHADRTFSSISRAWRNSQ-RDTSDIKELIPEFYYLPEMF 186 (304)
T ss_dssp CSSSCCCSBSSCSCCHHHHHHHHTTSTTHHHHHHHHHTSSCCCTTTSCCBHHHHHHHHH-HCTTCCCCBCGGGGTCGGGG
T ss_pred cCCCCCcccCCCCCChhHHHHHHhcCCchhHHHHHhhcCcccCCccccccHHHHHHHhc-ccccchhhcCchhhcChHhh
Confidence 34568999999999999999999999999999999999999999999999999999875 56899999999999999999
Q ss_pred ecCCCCCcccccCCceeCeEecCCCCCCHHHHHHHHHHhhhhhhhhcccCceEEEEeecCCCCHHHHhccccCCCccccc
Q psy10778 87 VNNEGFDFGVRQNGQRVDSVILPPWASDPRTFIMVHRQSLESELVSENLPHWIDLVFGYKQSGKAAVDAINVFHPATYYG 166 (556)
Q Consensus 87 ~n~~~~~~~~~~~~~~~~~v~lp~w~~~~~~f~~~~r~~les~~v~~~l~~widl~fg~~~~~~~~~~~~n~~~~~~y~~ 166 (556)
.|.|+++||++++|+.|+||+||+|+++|++||++||+||||+|||++||+||||||||||+|++|++|.|||+|++|++
T Consensus 187 ~n~n~~~~g~~~~g~~v~DV~LP~Wa~s~~~FV~~~R~aLES~~VS~~L~~WIDLiFG~kq~G~~A~~a~Nvf~p~~Y~~ 266 (304)
T d1t77a1 187 VNFNNYNLGVMDDGTVVSDVELPPWAKTSEEFVHINRLALESEFVSCQLHQWIDLIFGYKQQGPEAVRALNVFYYLTYEG 266 (304)
T ss_dssp SCTTCCCCCBCTTSCBCSSCBCCTTCSSHHHHHHHHHHHHHSHHHHTTHHHHHHHHTSTTSSHHHHHHHTCCBCGGGSTT
T ss_pred hhccccccccccCCCcccccccCCccCCcHHHHHHHHHHHhchHHHhHhhhhHHhhhccccCCHHHHHhccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred -cccCCCCCHHHHHHHHHHHHhcCCcccccccCCCCCC
Q psy10778 167 -FDIAAIPDPLERTAWETMIRTYGQTPRQLFKSAHPMN 203 (556)
Q Consensus 167 -~~~~~~~d~~~~~~~~~~~~~~g~~p~~lf~~~h~~~ 203 (556)
++.+.+.|+.+|.+++.++++|||+|.|||++|||+|
T Consensus 267 ~~~~~~~~d~~~~~~~~~~~~~~Gq~P~QLF~~pHP~R 304 (304)
T d1t77a1 267 AVNLNSITDPVLREAVEAQIRSFGQTPSQLLIEPHPPR 304 (304)
T ss_dssp SCCGGGCCSHHHHHHHHHHHHHHCCCCCCCCSSCCCCC
T ss_pred cccccccCCHHHHHHHHHHHHHCCCCchhhcCCCCCCC
Confidence 6888999999999999999999999999999999985
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=6.5e-31 Score=262.64 Aligned_cols=236 Identities=14% Similarity=0.152 Sum_probs=204.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
.++++ .++.+.+|++.+......+. +|.+.|++++|+|+|++||+|+.||+|++|++..... .....+.+|
T Consensus 31 ~l~~~-~~~~v~i~~~~~~~~~~~~~-~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~-------~~~~~~~~~ 101 (311)
T d1nr0a1 31 KIQYC-NGTSVYTVPVGSLTDTEIYT-EHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH-------ILKTTIPVF 101 (311)
T ss_dssp EEEEE-ETTEEEEEETTCSSCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTC-------CEEEEEECS
T ss_pred EEEEE-eCCEEEEEECCCCceeEEEc-CCCCCEEEEEEeCCCCeEeccccCceEeeeeeecccc-------ccccccccc
Confidence 45554 46789999999887777775 8999999999999999999999999999999986511 122557899
Q ss_pred CccEEEEEEccCCCEEEEEcC--CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe-EEEEeecCcCCCCeEEEE
Q psy10778 375 SACVTDLYLCAGFSVAVSSSE--DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE-IASVLQTTKTGGSILRLH 451 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~--Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~-i~s~s~~~~~~d~~I~iw 451 (556)
.++|.+++|+|+++++++++. ++.+++|++.+++.+.++.. | ...|++++|+|++.. +++++ .|+.|++|
T Consensus 102 ~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~-h-~~~v~~v~~~~~~~~~l~sgs-----~d~~i~i~ 174 (311)
T d1nr0a1 102 SGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTG-Q-ARAMNSVDFKPSRPFRIISGS-----DDNTVAIF 174 (311)
T ss_dssp SSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCC-C-SSCEEEEEECSSSSCEEEEEE-----TTSCEEEE
T ss_pred cCccccccccccccccccccccccccccccccccccccccccc-c-ccccccccccccceeeecccc-----cccccccc
Confidence 999999999999999999875 46699999999999999998 9 899999999999886 66777 89999999
Q ss_pred EeC-CcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC------CCCCCeEEEEEecC
Q psy10778 452 TIN-AQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT------NVALPVIAVTYSCD 523 (556)
Q Consensus 452 di~-g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~------~h~~~V~~l~~s~d 523 (556)
|++ ++..... .+...|++++|+ |++ +++++|+.||.|++||..+++.+..+.. +|...|++++|+|+
T Consensus 175 d~~~~~~~~~~~~~~~~i~~v~~~--p~~---~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 175 EGPPFKFKSTFGEHTKFVHSVRYN--PDG---SLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp ETTTBEEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred cccccccccccccccccccccccC--ccc---cccccccccccccccccccccccccccccccccccccccccccccCCC
Confidence 998 5666665 467899999999 898 8999999999999999999988887753 57889999999999
Q ss_pred CCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 524 SQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 524 g~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+++|++|+.||.|+|||+++++.+..+.
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~ 277 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIP 277 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred CCEEEEEeCCCeEEEEECCCCcEEEEEE
Confidence 9999999999999999999887665554
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.98 E-value=4.3e-30 Score=258.71 Aligned_cols=234 Identities=12% Similarity=0.162 Sum_probs=206.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCc---c-eEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeE
Q psy10778 295 MICWNECDNLIRLKMSKELPAT---P-VIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~---~-~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
+|++|+ ||.|+|||+.+.... . ....+|.+.|++++|+|++++|++|+.||+|++||+.... . +....
T Consensus 65 ~latg~-dg~V~iWd~~~~~~~~~~~~~~~~~h~~~I~~v~~s~dg~~l~s~~~dg~i~iwd~~~~~--~-----~~~~~ 136 (337)
T d1gxra_ 65 HVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPT--P-----RIKAE 136 (337)
T ss_dssp EEEEEC-BSEEEEEETTSTTCCSCSEEEECSCTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC---------EEEEE
T ss_pred EEEEEE-CCEEEEEEccCCcccceeEEeeecCCCCcEEEEEEcCCCCEEEEeecccccccccccccc--c-----ccccc
Confidence 788887 899999998754322 2 2234789999999999999999999999999999987541 1 23466
Q ss_pred eeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 371 LLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
+.+|...+.+++|+|++.++++++.|+.+++||+.+++....... | ...|.+++|++++..+++++ .++.+++
T Consensus 137 ~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~-~-~~~v~~l~~s~~~~~~~~~~-----~d~~v~i 209 (337)
T d1gxra_ 137 LTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQG-H-TDGASCIDISNDGTKLWTGG-----LDNTVRS 209 (337)
T ss_dssp EECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-c-cccccccccccccccccccc-----ccccccc
Confidence 789999999999999999999999999999999999999999888 8 89999999999999999998 8999999
Q ss_pred EEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEE
Q psy10778 451 HTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 451 wdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~s 529 (556)
||++ ++.+....+...|.+++|+ |++ ++|++|+.||.+++||+.+++..... .|...|++++|+|++++|++
T Consensus 210 ~d~~~~~~~~~~~~~~~i~~l~~~--~~~---~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~i~~v~~s~~g~~l~s 282 (337)
T d1gxra_ 210 WDLREGRQLQQHDFTSQIFSLGYC--PTG---EWLAVGMESSNVEVLHVNKPDKYQLH--LHESCVLSLKFAYCGKWFVS 282 (337)
T ss_dssp EETTTTEEEEEEECSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTSSCEEEEC--CCSSCEEEEEECTTSSEEEE
T ss_pred cccccceeecccccccceEEEEEc--ccc---cccceecccccccccccccccccccc--ccccccceEEECCCCCEEEE
Confidence 9997 8888888899999999999 888 89999999999999999988876554 58899999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|+.||.|++||+.+++.+..+
T Consensus 283 ~s~Dg~i~iwd~~~~~~~~~~ 303 (337)
T d1gxra_ 283 TGKDNLLNAWRTPYGASIFQS 303 (337)
T ss_dssp EETTSEEEEEETTTCCEEEEE
T ss_pred EeCCCeEEEEECCCCCEEEEc
Confidence 999999999999987766444
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.98 E-value=3.8e-30 Score=256.04 Aligned_cols=232 Identities=17% Similarity=0.217 Sum_probs=201.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc-----------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE----------- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~----------- 363 (556)
+|++|+.||+|++||..+++....+. .|...|++++|+|+++++++|+.|+.+++|+...........
T Consensus 69 ~l~sgs~Dg~v~iWd~~~~~~~~~~~-~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (340)
T d1tbga_ 69 LLVSASQDGKLIIWDSYTTNKVHAIP-LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLS 147 (340)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE-CSCSCEEEEEECTTSSEEEEEETTCCEEEEESSSSCSCCCEEEEECCCSSCEE
T ss_pred EEEEEECCCceeeeecccceeEEEEe-cccccEEeeEeeccceeeeeecccceeecccccccccccccceeccccccccc
Confidence 89999999999999999988777776 799999999999999999999999999999965432111100
Q ss_pred -------------------------ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC
Q psy10778 364 -------------------------FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP 418 (556)
Q Consensus 364 -------------------------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~ 418 (556)
..........+...+.+..+.+.+.++++|+.|+.|++||+++++.+.++.. |
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~-h- 225 (340)
T d1tbga_ 148 CCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTG-H- 225 (340)
T ss_dssp EEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECC-C-
T ss_pred ccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeC-C-
Confidence 0011122334566788888999999999999999999999999999999999 9
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEE
Q psy10778 419 NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQ 494 (556)
Q Consensus 419 ~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~ 494 (556)
...|++++|+|++..|++++ .|+.|++||++ ...+.... +...+.+++|+ +++ ++|++|+.||.|+
T Consensus 226 ~~~i~~v~~~p~~~~l~s~s-----~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s--~~~---~~l~~g~~dg~i~ 295 (340)
T d1tbga_ 226 ESDINAICFFPNGNAFATGS-----DDATCRLFDLRADQELMTYSHDNIICGITSVSFS--KSG---RLLLAGYDDFNCN 295 (340)
T ss_dssp SSCEEEEEECTTSSEEEEEE-----TTSCEEEEETTTTEEEEEECCTTCCSCEEEEEEC--SSS---CEEEEEETTSCEE
T ss_pred CCCeEEEEECCCCCEEEEEe-----CCCeEEEEeecccccccccccccccCceEEEEEC--CCC---CEEEEEECCCEEE
Confidence 89999999999999999999 89999999998 55555542 45679999999 888 8999999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 495 LWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 495 iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
+||+.+++++..+. +|..+|++++|+|++++|++|+.||.|+|||
T Consensus 296 iwd~~~~~~~~~~~-~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 296 VWDALKADRAGVLA-GHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEEC-CCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCcEEEEEc-CCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence 99999999999998 8999999999999999999999999999997
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.97 E-value=1e-29 Score=253.80 Aligned_cols=228 Identities=13% Similarity=0.128 Sum_probs=193.7
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcce-EcCCCCCceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCcccccccCCCeE
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPV-IRPPLGATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFCKPPTI 370 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~-~~~~h~~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~~~~~~ 370 (556)
.+|++|+.||+|++|++.++..... ....|.+.|.+++|+|++++|++++. +..++||+++++ +....
T Consensus 71 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~---------~~~~~ 141 (311)
T d1nr0a1 71 YYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTG---------TSNGN 141 (311)
T ss_dssp SEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTC---------CBCBC
T ss_pred CeEeccccCceEeeeeeeccccccccccccccCccccccccccccccccccccccccccccccccc---------ccccc
Confidence 3899999999999999987765432 22378999999999999999999985 456999998876 45577
Q ss_pred eeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 371 LLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 371 l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
+.+|...|++++|+|+++ .+++|+.||.|++||+++++....+.. | ..+|++++++|++..+++++ .|+.|+
T Consensus 142 l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~-~-~~~i~~v~~~p~~~~l~~~~-----~d~~v~ 214 (311)
T d1nr0a1 142 LTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGE-H-TKFVHSVRYNPDGSLFASTG-----GDGTIV 214 (311)
T ss_dssp CCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECC-C-SSCEEEEEECTTSSEEEEEE-----TTSCEE
T ss_pred ccccccccccccccccceeeeccccccccccccccccccccccccc-c-cccccccccCcccccccccc-----cccccc
Confidence 889999999999999988 588999999999999999999999998 9 89999999999999999999 899999
Q ss_pred EEEeC-CcEEEEee--------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 450 LHTIN-AQLITSLA--------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 450 iwdi~-g~~i~~~~--------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
+||.+ +..+..+. |...|++++|+ |++ ++|++|+.||.|++||+.++++++++...+......+.+
T Consensus 215 ~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s--~~~---~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~ 289 (311)
T d1nr0a1 215 LYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWS--PDG---TKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGI 289 (311)
T ss_dssp EEETTTCCEEEECBCTTSSSCSSSSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEE
T ss_pred ccccccccccccccccccccccccccccccccC--CCC---CEEEEEeCCCeEEEEECCCCcEEEEEECCCCccceEEEE
Confidence 99997 66666553 46789999999 898 899999999999999999999999987432222333344
Q ss_pred ecCCCEEEEEcCCCcEEEEEcC
Q psy10778 521 SCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.+++..|++++.||.|++||.+
T Consensus 290 ~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 290 IWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp EECSSCEEEEETTCCEEEEETT
T ss_pred EecCCEEEEEECCCEEEEEeCC
Confidence 4456679999999999999974
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=1.5e-29 Score=254.68 Aligned_cols=222 Identities=13% Similarity=0.144 Sum_probs=200.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCc--ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPAT--PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~--~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+|++|+.||.|++|++...... ..+. .|...|.+++|+|++.++++++.|+.|++|++..+ +......
T Consensus 111 ~l~s~~~dg~i~iwd~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~---------~~~~~~~ 180 (337)
T d1gxra_ 111 TLIVGGEASTLSIWDLAAPTPRIKAELT-SSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ---------TLVRQFQ 180 (337)
T ss_dssp EEEEEESSSEEEEEECCCC--EEEEEEE-CSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTT---------EEEEEEC
T ss_pred EEEEeecccccccccccccccccccccc-ccccccccccccccccccccccccccccccccccc---------ccccccc
Confidence 8899999999999998754432 3333 68899999999999999999999999999998765 4456778
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+|...|++++|++++..+++|+.||.+++||+++++.+..+.. ...|.+++|+|++..+++++ .++.+++||
T Consensus 181 ~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~---~~~i~~l~~~~~~~~l~~~~-----~d~~i~i~d 252 (337)
T d1gxra_ 181 GHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDF---TSQIFSLGYCPTGEWLAVGM-----ESSNVEVLH 252 (337)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC---SSCEEEEEECTTSSEEEEEE-----TTSCEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccceeeccccc---ccceEEEEEcccccccceec-----ccccccccc
Confidence 8999999999999999999999999999999999999888875 78999999999999999999 899999999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
++ ++......|...|++++|+ |++ ++|++|+.||.|++||+.+++.+..+. |...|++++|+|++++|++|+
T Consensus 253 ~~~~~~~~~~~~~~~i~~v~~s--~~g---~~l~s~s~Dg~i~iwd~~~~~~~~~~~--~~~~v~~~~~s~d~~~l~t~s 325 (337)
T d1gxra_ 253 VNKPDKYQLHLHESCVLSLKFA--YCG---KWFVSTGKDNLLNAWRTPYGASIFQSK--ESSSVLSCDISVDDKYIVTGS 325 (337)
T ss_dssp TTSSCEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSEEEEEETTTCCEEEEEE--CSSCEEEEEECTTSCEEEEEE
T ss_pred ccccccccccccccccceEEEC--CCC---CEEEEEeCCCeEEEEECCCCCEEEEcc--CCCCEEEEEEeCCCCEEEEEe
Confidence 98 6666666788999999999 899 899999999999999999999998876 779999999999999999999
Q ss_pred CCCcEEEEEc
Q psy10778 532 TEGLVIIWES 541 (556)
Q Consensus 532 ~Dg~V~vwdl 541 (556)
.||.|+|||+
T Consensus 326 ~D~~I~vWdl 335 (337)
T d1gxra_ 326 GDKKATVYEV 335 (337)
T ss_dssp TTSCEEEEEE
T ss_pred CCCeEEEEEE
Confidence 9999999997
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.97 E-value=1.2e-29 Score=248.59 Aligned_cols=228 Identities=15% Similarity=0.194 Sum_probs=200.7
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|++|+.||+|++||+.+++....+. +|.+.|.++++++++.++++++.++.+.+|+.... +....+.+|
T Consensus 31 ~l~s~s~Dg~i~iWd~~~~~~~~~~~-~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~ 100 (317)
T d1vyhc1 31 VMVSASEDATIKVWDYETGDFERTLK-GHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF---------ECIRTMHGH 100 (317)
T ss_dssp EEEEEESSSCEEEEETTTCCCCEEEC-CCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS---------CEEECCCCC
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCcEEEEeeeccccccccccccccccccccccc---------ccccccccc
Confidence 88999999999999999998888886 89999999999999999999999999999997755 344567789
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-------------
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT------------- 441 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~------------- 441 (556)
...+.++.+++++..+++++.|+.+++||+++++.+..+.. | ...+.++++++++..+++++.++
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~ 178 (317)
T d1vyhc1 101 DHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTG-H-REWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178 (317)
T ss_dssp SSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEEC-C-SSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEE
T ss_pred cccceeeeccCCCceEEeeccCcceeEeecccceeeeEEcc-C-CCcceeeecccCCCEEEEEeCCCeEEEEeeccceee
Confidence 99999999999999999999999999999999999999998 8 89999999999999999988332
Q ss_pred --------------------------------------------cCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeC
Q psy10778 442 --------------------------------------------KTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNA 475 (556)
Q Consensus 442 --------------------------------------------~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~ 475 (556)
++.|+.|++||++ ++++..+. |...|.+++++
T Consensus 179 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~-- 256 (317)
T d1vyhc1 179 AELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFH-- 256 (317)
T ss_dssp EEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEC--
T ss_pred EEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEEC--
Confidence 0134455555554 44555543 56789999999
Q ss_pred CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 476 pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
|++ ++|++|+.||.|++||+.+++++..+. +|..+|++++|+|++++|++|+.||.|++||
T Consensus 257 ~~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 257 SGG---KFILSCADDKTLRVWDYKNKRCMKTLN-AHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp SSS---SCEEEEETTTEEEEECCTTSCCCEEEE-CCSSCEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred CCC---CEEEEEECCCeEEEEECCCCcEEEEEc-CCCCCEEEEEEcCCCCEEEEEeCCCeEEEeC
Confidence 888 899999999999999999999999998 8999999999999999999999999999996
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.97 E-value=1.3e-28 Score=251.45 Aligned_cols=229 Identities=15% Similarity=0.094 Sum_probs=190.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
++++|+.||.|++|+..+++...... .+|.+.|++++|+|++++|++|+.|++|+||++..+.. .....+.+
T Consensus 21 ~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~-------~~~~~~~~ 93 (371)
T d1k8kc_ 21 QIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTW-------KPTLVILR 93 (371)
T ss_dssp EEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEE-------EEEEECCC
T ss_pred EEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeeccccc-------cccccccc
Confidence 78889999999999998775433322 28999999999999999999999999999999985411 22345678
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeE----EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGY----IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~----v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
|...|++++|+|+++.+++|+.|+++++|++..... ...... | ...|.+++|+|++.+|++++ .|+.|+
T Consensus 94 ~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~-~-~~~v~~v~~~p~~~~l~s~s-----~D~~v~ 166 (371)
T d1k8kc_ 94 INRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKP-I-RSTVLSLDWHPNSVLLAAGS-----CDFKCR 166 (371)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTT-C-CSCEEEEEECTTSSEEEEEE-----TTSCEE
T ss_pred ccccccccccccccccceeecccCcceeeeeecccccccccccccc-c-ccccccccccccccceeccc-----cCcEEE
Confidence 999999999999999999999999999998876432 233445 7 78999999999999999999 899999
Q ss_pred EEEeCC-------------------cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 450 LHTINA-------------------QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 450 iwdi~g-------------------~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
+|+... ..+... .+...|.+++|+ |+| ++|++++.||.|++||+.+++.+..+.
T Consensus 167 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g---~~l~s~~~d~~i~iwd~~~~~~~~~~~- 240 (371)
T d1k8kc_ 167 IFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFS--ANG---SRVAWVSHDSTVCLADADKKMAVATLA- 240 (371)
T ss_dssp EEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSSCEEEEEEC--SSS---SEEEEEETTTEEEEEEGGGTTEEEEEE-
T ss_pred EEeeccCccccccccccccccccceeeeeeccCccCcEEEEEee--ccc---ccccccccCCcceEEeeecccceeeee-
Confidence 999741 223332 356789999999 888 899999999999999999999999998
Q ss_pred CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCC
Q psy10778 510 NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSH 544 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~ 544 (556)
.|..+|.+++|+|++++|++|. |+.+++|.....
T Consensus 241 ~~~~~v~s~~fs~d~~~la~g~-d~~~~~~~~~~~ 274 (371)
T d1k8kc_ 241 SETLPLLAVTFITESSLVAAGH-DCFPVLFTYDSA 274 (371)
T ss_dssp CSSCCEEEEEEEETTEEEEEET-TSSCEEEEEETT
T ss_pred cccccceeeeecCCCCEEEEEc-CCceEEEEeeCC
Confidence 7889999999999998887655 777777776553
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=1.8e-27 Score=242.36 Aligned_cols=226 Identities=15% Similarity=0.160 Sum_probs=190.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.+|++|+.||.|++|+...++...... +|...|.++++++++..+++|+.++.+++||.... ........
T Consensus 134 ~~l~s~~~dg~v~i~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~---------~~~~~~~~ 203 (388)
T d1erja_ 134 KFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTG---------QCSLTLSI 203 (388)
T ss_dssp SEEEEEETTSCEEEEETTTTEEEEEEC-CCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT---------EEEEEEEC
T ss_pred Ccceecccccccccccccccccccccc-cccccccccccccccccccccccceeeeeeecccc---------cccccccc
Confidence 389999999999999999887776665 79999999999999999999999999999998764 22344444
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeC-------CCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIP-------CVDPNTPVSHVTMSETNGEIASVLQTTKTGGS 446 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~-------~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~ 446 (556)
+...+....+.+++.+|++|+.||.|++||+.++..+..+. . | ...|.+++|+|++..|++++ .|+
T Consensus 204 ~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~-h-~~~v~~l~~s~~~~~l~s~~-----~d~ 276 (388)
T d1erja_ 204 EDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTG-H-KDSVYSVVFTRDGQSVVSGS-----LDR 276 (388)
T ss_dssp SSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CC-C-SSCEEEEEECTTSSEEEEEE-----TTS
T ss_pred ccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccC-C-CCCEEEEEECCCCCEEEEEE-----CCC
Confidence 54444444444588899999999999999999988776653 3 6 67899999999999999999 899
Q ss_pred eEEEEEeC-CcE-------------EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCC
Q psy10778 447 ILRLHTIN-AQL-------------ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVA 512 (556)
Q Consensus 447 ~I~iwdi~-g~~-------------i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~ 512 (556)
.|++||++ +.. .....+...|.+++|+ |++ ++|++|+.||.|++||+.+++++.++. +|.
T Consensus 277 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~---~~l~sg~~dg~i~vwd~~~~~~~~~l~-~H~ 350 (388)
T d1erja_ 277 SVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT--QND---EYILSGSKDRGVLFWDKKSGNPLLMLQ-GHR 350 (388)
T ss_dssp EEEEEEC---------------CEEEEEECCSSCEEEEEEC--GGG---CEEEEEETTSEEEEEETTTCCEEEEEE-CCS
T ss_pred cEEEEeccCCccccccccccccceeeecccccceEEEEEEC--CCC---CEEEEEeCCCEEEEEECCCCcEEEEEe-CCC
Confidence 99999985 221 1122467889999999 888 899999999999999999999999998 899
Q ss_pred CCeEEEEE------ecCCCEEEEEcCCCcEEEEEcC
Q psy10778 513 LPVIAVTY------SCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 513 ~~V~~l~~------s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
..|+++++ +|++.+|++|+.||+|+||+++
T Consensus 351 ~~V~~~~~~~~~~~spd~~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 351 NSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386 (388)
T ss_dssp SCEEEEEECSSCTTCTTCEEEEEEETTSEEEEEEEE
T ss_pred CCEEEEEEecCcccCCCCCEEEEEeCCCEEEEEeee
Confidence 99999975 5688999999999999999985
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.96 E-value=4.9e-27 Score=239.09 Aligned_cols=233 Identities=20% Similarity=0.239 Sum_probs=193.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-----------------CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeecc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-----------------PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNA 357 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-----------------~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~ 357 (556)
+|++|+ |++|++|++.+++....+. ..|...|++++|+|++++|++|+.||+|++|+...+
T Consensus 76 ~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~- 153 (388)
T d1erja_ 76 YLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENR- 153 (388)
T ss_dssp EEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTT-
T ss_pred EEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceeccccccccccccccc-
Confidence 888886 8999999998776544332 246778999999999999999999999999998765
Q ss_pred CcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC-CCCeEEE
Q psy10778 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE-TNGEIAS 436 (556)
Q Consensus 358 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp-~~~~i~s 436 (556)
+.+....+|...|.++++++++..+++|+.+|.+++||+.+......... + ....++.+++ ++..|++
T Consensus 154 --------~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~l~~ 222 (388)
T d1erja_ 154 --------KIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSI-E--DGVTTVAVSPGDGKYIAA 222 (388)
T ss_dssp --------EEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEEC-S--SCEEEEEECSTTCCEEEE
T ss_pred --------ccccccccccccccccccccccccccccccceeeeeeecccccccccccc-c--cccccccccCCCCCeEEE
Confidence 45577889999999999999999999999999999999999888887776 4 4455555554 7788888
Q ss_pred EeecCcCCCCeEEEEEeC-CcEEEEee--------cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE----
Q psy10778 437 VLQTTKTGGSILRLHTIN-AQLITSLA--------SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH---- 503 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~-g~~i~~~~--------~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~---- 503 (556)
++ .++.|++||.+ +..+..+. |...|.+++|+ |++ ++|++|+.||.|++||+.+++.
T Consensus 223 ~~-----~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~---~~l~s~~~d~~i~iwd~~~~~~~~~~ 292 (388)
T d1erja_ 223 GS-----LDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFT--RDG---QSVVSGSLDRSVKLWNLQNANNKSDS 292 (388)
T ss_dssp EE-----TTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEEC--TTS---SEEEEEETTSEEEEEEC---------
T ss_pred Ec-----CCCeEEEeecccCccceeeccccccccCCCCCEEEEEEC--CCC---CEEEEEECCCcEEEEeccCCcccccc
Confidence 88 89999999997 66555542 46789999999 888 8999999999999999875542
Q ss_pred --------EEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 504 --------LLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 504 --------~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
..... .|...|++++|+|++++|++|+.||.|++||+++++.+..+.
T Consensus 293 ~~~~~~~~~~~~~-~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~ 347 (388)
T d1erja_ 293 KTPNSGTCEVTYI-GHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQ 347 (388)
T ss_dssp ------CEEEEEE-CCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred ccccccceeeecc-cccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEe
Confidence 23333 678999999999999999999999999999999988776665
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=4.2e-27 Score=240.14 Aligned_cols=209 Identities=13% Similarity=0.156 Sum_probs=176.2
Q ss_pred CCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10778 323 LGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLW 402 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iw 402 (556)
..++|+|++|+|+|++||+|+.||.|+||+...+. ...+..+.+|.++|++++|+|++++|++|+.|++|++|
T Consensus 6 ~~~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~-------~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vW 78 (371)
T d1k8kc_ 6 LVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNK-------WVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVW 78 (371)
T ss_dssp CSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTE-------EEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEE
T ss_pred CCCCeEEEEECCCCCEEEEEeCCCEEEEEECCCCC-------EEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEE
Confidence 34789999999999999999999999999987541 13457789999999999999999999999999999999
Q ss_pred eCCCCeEE--EEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-Cc-E--EEEe--ecCCCeEEEEEee
Q psy10778 403 DINTIGYI--REIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQ-L--ITSL--ASELRITSVTFSN 474 (556)
Q Consensus 403 dl~~~~~v--~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~-~--i~~~--~~~~~i~~i~~s~ 474 (556)
|+.++... ..+.. | ...|.+++|+|+++.+++++ .++.+++|+++ .. . .... .+...|.+++|+
T Consensus 79 d~~~~~~~~~~~~~~-~-~~~v~~i~~~p~~~~l~~~s-----~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~- 150 (371)
T d1k8kc_ 79 TLKGRTWKPTLVILR-I-NRAARCVRWAPNEKKFAVGS-----GSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWH- 150 (371)
T ss_dssp EEETTEEEEEEECCC-C-SSCEEEEEECTTSSEEEEEE-----TTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEEC-
T ss_pred eeccccccccccccc-c-cccccccccccccccceeec-----ccCcceeeeeeccccccccccccccccccccccccc-
Confidence 99877644 44556 6 78899999999999999999 89999999986 22 1 1222 256789999999
Q ss_pred CCCCCcceEEEEEeCCCeEEEEeCCC------------------CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcE
Q psy10778 475 APEGVSQNVIVTGHSDGTIQLWSGYK------------------LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLV 536 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~dg~I~iwd~~~------------------~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V 536 (556)
|++ ++|++|+.||.|++|+... ++.+.... +|...|.+++|+|++++|++++.||.|
T Consensus 151 -p~~---~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~s~~g~~l~s~~~d~~i 225 (371)
T d1k8kc_ 151 -PNS---VLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESS-SSCGWVHGVCFSANGSRVAWVSHDSTV 225 (371)
T ss_dssp -TTS---SEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECC-CCSSCEEEEEECSSSSEEEEEETTTEE
T ss_pred -ccc---cceeccccCcEEEEEeeccCccccccccccccccccceeeeeecc-CccCcEEEEEeecccccccccccCCcc
Confidence 899 8999999999999999743 23455555 788999999999999999999999999
Q ss_pred EEEEcCCCCCcCeee
Q psy10778 537 IIWESSSHNRTPKFL 551 (556)
Q Consensus 537 ~vwdl~~~~~~~~~~ 551 (556)
++||+.++..+..+.
T Consensus 226 ~iwd~~~~~~~~~~~ 240 (371)
T d1k8kc_ 226 CLADADKKMAVATLA 240 (371)
T ss_dssp EEEEGGGTTEEEEEE
T ss_pred eEEeeecccceeeee
Confidence 999998876655443
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.95 E-value=4.9e-26 Score=223.62 Aligned_cols=232 Identities=15% Similarity=0.108 Sum_probs=188.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+|++|+.||+|++||+++++....+...|...|++++|+|++++ ++++.|+.+++|+....... ........+
T Consensus 26 ~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~~-~~~~~d~~v~~~~~~~~~~~------~~~~~~~~~ 98 (299)
T d1nr0a2 26 TLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGSGVD------SSKAVANKL 98 (299)
T ss_dssp EEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSCE-EEEETTTEEEEECSSSSSSC------TTSCCEEEC
T ss_pred EEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeecccee-ecccceeeEEEeccCCcccc------ccccccccc
Confidence 88899999999999999988777766679999999999999875 55667999999997653111 222345667
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
...+.+++++++++.+++++ ++.+.+|+.. +..... . ...+.+++++|++..+++++ .++.|++||++
T Consensus 99 ~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~--~~~~~~-~---~~~~~~~~~s~~~~~l~~g~-----~dg~i~~~d~~ 166 (299)
T d1nr0a2 99 SSQPLGLAVSADGDIAVAAC-YKHIAIYSHG--KLTEVP-I---SYNSSCVALSNDKQFVAVGG-----QDSKVHVYKLS 166 (299)
T ss_dssp SSCEEEEEECTTSSCEEEEE-SSEEEEEETT--EEEEEE-C---SSCEEEEEECTTSCEEEEEE-----TTSEEEEEEEE
T ss_pred cccccccccccccccccccc-cccccccccc--cccccc-c---cccccccccccccccccccc-----ccccccccccc
Confidence 88999999999999777665 5689999854 333333 3 45689999999999999999 89999999997
Q ss_pred CcE---EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEE
Q psy10778 455 AQL---ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYA 529 (556)
Q Consensus 455 g~~---i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~s 529 (556)
+.. +....|...|++++|+ |++ ++|++++.||.|++||+.++........ +|..+|++++|+|++++|++
T Consensus 167 ~~~~~~~~~~~~~~~i~~~~~~--~~~---~~l~~~~~d~~i~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s 241 (299)
T d1nr0a2 167 GASVSEVKTIVHPAEITSVAFS--NNG---AFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLAT 241 (299)
T ss_dssp TTEEEEEEEEECSSCEEEEEEC--TTS---SEEEEEETTSCEEEEEGGGTTEESCCCCCCCCSSCEEEEEECTTSSEEEE
T ss_pred cccccccccccccccccccccc--ccc---ccccccccccccccccccccccccccccccccccccccccccccccceEE
Confidence 433 2334678899999999 888 8999999999999999988766544332 68899999999999999999
Q ss_pred EcCCCcEEEEEcCCCCCcCee
Q psy10778 530 SNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 530 gs~Dg~V~vwdl~~~~~~~~~ 550 (556)
|+.||.|++||+++....+.+
T Consensus 242 gs~dg~i~iwd~~~~~~~~~~ 262 (299)
T d1nr0a2 242 GSLDNSVIVWNMNKPSDHPII 262 (299)
T ss_dssp EETTSCEEEEETTCTTSCCEE
T ss_pred EcCCCEEEEEECCCCCcceEE
Confidence 999999999999886655443
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.95 E-value=8.4e-26 Score=224.23 Aligned_cols=211 Identities=17% Similarity=0.216 Sum_probs=180.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|.+.|++++|+|++++||+|+.||+|+|||+.++ +.+..+.+|...|.+++|+|++.++++|+.|+.+.+
T Consensus 53 GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~---------~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~ 123 (340)
T d1tbga_ 53 GHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTT---------NKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSI 123 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTT---------EEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCceeeeecccc---------eeEEEEecccccEEeeEeeccceeeeeecccceeec
Confidence 89999999999999999999999999999999876 556788999999999999999999999999999999
Q ss_pred EeCCCCe----EEEEeCC----------------------------------------CCCCCCeeEEEEeCCCCeEEEE
Q psy10778 402 WDINTIG----YIREIPC----------------------------------------VDPNTPVSHVTMSETNGEIASV 437 (556)
Q Consensus 402 wdl~~~~----~v~~l~~----------------------------------------~h~~~~V~~l~~sp~~~~i~s~ 437 (556)
|+..... ....+.. .+ ...+....+.+.+..++++
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 202 (340)
T d1tbga_ 124 YNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGH-TGDVMSLSLAPDTRLFVSG 202 (340)
T ss_dssp EESSSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECC-SSCEEEEEECTTSSEEEEE
T ss_pred ccccccccccccceeccccccccccccccccccccccccccccccccccccccccccccc-ceeEeeeccccccceeEEe
Confidence 9965421 1111111 02 3456777778888888888
Q ss_pred eecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCC
Q psy10778 438 LQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALP 514 (556)
Q Consensus 438 s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~ 514 (556)
+ .++.|++||++ ++++..+. |...|++++|+ |++ ++|++|+.||.|++||+...+.+..+.. .+...
T Consensus 203 ~-----~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~--p~~---~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~ 272 (340)
T d1tbga_ 203 A-----CDASAKLWDVREGMCRQTFTGHESDINAICFF--PNG---NAFATGSDDATCRLFDLRADQELMTYSHDNIICG 272 (340)
T ss_dssp E-----TTTEEEEEETTTTEEEEEECCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTTEEEEEECCTTCCSC
T ss_pred e-----cCceEEEEECCCCcEEEEEeCCCCCeEEEEEC--CCC---CEEEEEeCCCeEEEEeecccccccccccccccCc
Confidence 8 89999999997 77777774 67899999999 888 8999999999999999999988877653 56788
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
|++++|+|++++|++|+.||.|++||+.+++.+..+..
T Consensus 273 i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~ 310 (340)
T d1tbga_ 273 ITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310 (340)
T ss_dssp EEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred eEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcC
Confidence 99999999999999999999999999999877766653
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.95 E-value=1.3e-25 Score=219.26 Aligned_cols=214 Identities=17% Similarity=0.257 Sum_probs=181.1
Q ss_pred cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC
Q psy10778 316 TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 316 ~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~ 395 (556)
...+. +|.+.|++++|+|++++|+||+.||+|+|||+.++ +.+..+.+|...|.+++|++++.++++++.
T Consensus 10 ~~~L~-GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~---------~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~ 79 (317)
T d1vyhc1 10 KYALS-GHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETG---------DFERTLKGHTDSVQDISFDHSGKLLASCSA 79 (317)
T ss_dssp SCEEE-CCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTC---------CCCEEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred cEEEc-CCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCCCcEEEEeeeccccccccccc
Confidence 34454 89999999999999999999999999999999876 677899999999999999999999999999
Q ss_pred CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEe
Q psy10778 396 DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFS 473 (556)
Q Consensus 396 Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s 473 (556)
++.+.+|+....+....+.. | ...+.++.+++++..+++++ .|+.+++||++ ++.+..+. +...+.+++|+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~-----~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (317)
T d1vyhc1 80 DMTIKLWDFQGFECIRTMHG-H-DHNVSSVSIMPNGDHIVSAS-----RDKTIKMWEVQTGYCVKTFTGHREWVRMVRPN 152 (317)
T ss_dssp TSCCCEEETTSSCEEECCCC-C-SSCEEEEEECSSSSEEEEEE-----TTSEEEEEETTTCCEEEEEECCSSCEEEEEEC
T ss_pred cccccccccccccccccccc-c-cccceeeeccCCCceEEeec-----cCcceeEeecccceeeeEEccCCCcceeeecc
Confidence 99999999999888888888 8 89999999999999999999 89999999997 66666553 45666777776
Q ss_pred eCCCCCcceEEEEEe--------------------------------------------------------------CCC
Q psy10778 474 NAPEGVSQNVIVTGH--------------------------------------------------------------SDG 491 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~--------------------------------------------------------------~dg 491 (556)
+++ ++|++|+ .||
T Consensus 153 --~~~---~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 227 (317)
T d1vyhc1 153 --QDG---TLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDK 227 (317)
T ss_dssp --TTS---SEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTS
T ss_pred --cCC---CEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeeccCCceeEeccCCC
Confidence 555 4555544 445
Q ss_pred eEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 492 TIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 492 ~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
.|++||+.+++++..+. +|...|++++|+|++++|++|+.||.|++||+++++.+..+..
T Consensus 228 ~i~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~ 287 (317)
T d1vyhc1 228 TIKMWDVSTGMCLMTLV-GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA 287 (317)
T ss_dssp EEEEEETTTTEEEEEEE-CCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred EEEEEECCCCcEEEEEe-CCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcC
Confidence 55555555566666676 7889999999999999999999999999999999887776653
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.95 E-value=1.7e-25 Score=224.06 Aligned_cols=243 Identities=14% Similarity=0.178 Sum_probs=189.1
Q ss_pred eEEeccCC-CeEEEEeCCCCCC--cceEcCCC-CCceEEEEEcC--CCCEEEEEeCCCcEEEEEeeeccCcccccccCCC
Q psy10778 295 MICWNECD-NLIRLKMSKELPA--TPVIRPPL-GATIATATTAP--DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 295 ~l~~gs~D-g~I~lw~~~~~~~--~~~~~~~h-~~~V~~i~~s~--dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
.+++++.+ ..|+.|+....+. ...+. +| ...|++++|+| ++++|++|+.||+|+|||+..+....... ....
T Consensus 31 ~la~~~~~~~~i~~~~~~~~~~~~~~~~~-gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~-~~~~ 108 (325)
T d1pgua1 31 AIAYPCGKSAFVRCLDDGDSKVPPVVQFT-GHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVE-VNVK 108 (325)
T ss_dssp EEEEEETTEEEEEECCSSCCSSCSEEEEC-TTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEE-EEEE
T ss_pred EEEEEeCCCEEEEEEeCCCCCccceEEEe-CCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeee-cccc
Confidence 44544433 3467777654433 33343 55 56899999997 57899999999999999998753221111 1112
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCe-EEEEeecCcCCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGE-IASVLQTTKTGG 445 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~-i~s~s~~~~~~d 445 (556)
..+..|.++|.+++|+++++.+++++ .++.+++|+..+++.+..+.. | ...|.+++|+|++.. +++++ .|
T Consensus 109 ~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-h-~~~v~~~~~~~~~~~~~~~~~-----~d 181 (325)
T d1pgua1 109 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSG-H-SQRINACHLKQSRPMRSMTVG-----DD 181 (325)
T ss_dssp EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCS-C-SSCEEEEEECSSSSCEEEEEE-----TT
T ss_pred cccccccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeee-c-ccccccccccccccceEEEee-----cc
Confidence 34567899999999999999888765 477899999999999999999 9 899999999999876 55666 89
Q ss_pred CeEEEEEeC-CcEEEEe----ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 446 SILRLHTIN-AQLITSL----ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~----~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
+.+++||.. ++..... .+...|.+++|+ |++. .++++|+.||.|++||+++++.+..+. +|..++.++.|
T Consensus 182 ~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~--pd~~--~~l~s~~~d~~i~iwd~~~~~~~~~l~-~~~~~v~~~~~ 256 (325)
T d1pgua1 182 GSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFS--PDSG--EFVITVGSDRKISCFDGKSGEFLKYIE-DDQEPVQGGIF 256 (325)
T ss_dssp TEEEEEETTTBEEEEEECSSSCTTCCEEEEEEC--STTC--CEEEEEETTCCEEEEETTTCCEEEECC-BTTBCCCSCEE
T ss_pred cccccccccccccceecccccCCCCccEEeeec--cccc--eeccccccccceeeeeecccccccccc-cccccccccee
Confidence 999999987 4544444 246789999999 6532 789999999999999999999999998 67777766666
Q ss_pred e---cCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 521 S---CDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 521 s---~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
+ ++|++|++++.||.|+|||+++++.+..+.
T Consensus 257 s~~~~dg~~l~s~s~D~~i~iwd~~~~~~~~~~~ 290 (325)
T d1pgua1 257 ALSWLDSQKFATVGADATIRVWDVTTSKCVQKWT 290 (325)
T ss_dssp EEEESSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred eeeccCCCEEEEEeCCCeEEEEECCCCCEEEEEE
Confidence 5 689999999999999999999877665543
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=1.8e-25 Score=223.76 Aligned_cols=229 Identities=10% Similarity=0.097 Sum_probs=179.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc-------CCCCCceEEEEEcCCCCEEEEEeC--CCcEEEEEeeeccCccccccc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR-------PPLGATIATATTAPDCHTLWLGLT--SGNILVYEYELNASTNKIEFC 365 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~-------~~h~~~V~~i~~s~dg~~l~tgs~--Dg~I~vwd~~~~~~~~~~~~~ 365 (556)
++++|+.||+|++|+...++...... ..|.++|.+++|+++++++++++. ++.+++|+.+++
T Consensus 79 ~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~--------- 149 (325)
T d1pgua1 79 YLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSG--------- 149 (325)
T ss_dssp EEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTC---------
T ss_pred EEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeeccccceEEEEeeccc---------
Confidence 89999999999999987554332221 257889999999999999988764 678999998765
Q ss_pred CCCeEeeCCCccEEEEEEccCCC-EEEEEcCCCcEEEEeCCCCeEEEEeCC--CCCCCCeeEEEEeCC-CCeEEEEeecC
Q psy10778 366 KPPTILLGHSACVTDLYLCAGFS-VAVSSSEDGTCLLWDINTIGYIREIPC--VDPNTPVSHVTMSET-NGEIASVLQTT 441 (556)
Q Consensus 366 ~~~~~l~~h~~~V~~l~~s~~~~-~l~sgs~Dg~I~iwdl~~~~~v~~l~~--~h~~~~V~~l~~sp~-~~~i~s~s~~~ 441 (556)
+.+..+.+|...|++++|+|++. ++++++.||.+++||+.+++....+.. .| ...|.+++|+|+ +..+++++
T Consensus 150 ~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~-~~~v~~v~~~pd~~~~l~s~~--- 225 (325)
T d1pgua1 150 NSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQ-GSFVRDVEFSPDSGEFVITVG--- 225 (325)
T ss_dssp CEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCT-TCCEEEEEECSTTCCEEEEEE---
T ss_pred ccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCC-CCccEEeeeccccceeccccc---
Confidence 55678889999999999999887 578899999999999998877666543 15 677999999997 56778888
Q ss_pred cCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeC-CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEE
Q psy10778 442 KTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNA-PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIA 517 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~-pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~ 517 (556)
.|+.|++||++ ++.+..+. |...+.++.|+.. ++| ++|++++.|+.|+|||+.+++++..+.. .+...+..
T Consensus 226 --~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg---~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 300 (325)
T d1pgua1 226 --SDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDS---QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQ 300 (325)
T ss_dssp --TTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSS---SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCE
T ss_pred --cccceeeeeeccccccccccccccccccceeeeeccCC---CEEEEEeCCCeEEEEECCCCCEEEEEEecCCcccCeE
Confidence 89999999997 88888775 4444444443321 467 7999999999999999999999988863 23333444
Q ss_pred EEEecC-CCEEEEEcCCCcEEEEEc
Q psy10778 518 VTYSCD-SQHLYASNTEGLVIIWES 541 (556)
Q Consensus 518 l~~s~d-g~~l~sgs~Dg~V~vwdl 541 (556)
+++.+. +..|++++.||.|++||+
T Consensus 301 ~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 301 VGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp EEEEEEETTEEEEEETTSCEEEEET
T ss_pred EEEEECCCCEEEEEECCCEEEEEEC
Confidence 444332 347899999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.94 E-value=5.4e-25 Score=217.63 Aligned_cols=228 Identities=18% Similarity=0.199 Sum_probs=182.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcc--------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTN-------------- 360 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~-------------- 360 (556)
+|++|+.||+|+|||..+++.+..+. +|.+.|.+++|+++ +|++|+.|+++++|+........
T Consensus 29 ~l~sgs~Dg~i~vWd~~~~~~~~~~~-~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (342)
T d2ovrb2 29 RIVSGSDDNTLKVWSAVTGKCLRTLV-GHTGGVWSSQMRDN--IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL 105 (342)
T ss_dssp EEEEEETTSCEEEEETTTCCEEEECC-CCSSCEEEEEEETT--EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCCEEEEEe-CCCCCEEEEEeCCC--ccccceecccccccccccccceecccccceeEeeeec
Confidence 88999999999999999998877765 89999999999874 99999999999999864221000
Q ss_pred ----------------------cc-----------------------------------cccCCCeEeeCCCccEEEEEE
Q psy10778 361 ----------------------KI-----------------------------------EFCKPPTILLGHSACVTDLYL 383 (556)
Q Consensus 361 ----------------------~~-----------------------------------~~~~~~~~l~~h~~~V~~l~~ 383 (556)
.. .....+..+.+|...+.++
T Consensus 106 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~-- 183 (342)
T d2ovrb2 106 HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-- 183 (342)
T ss_dssp ETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEE--
T ss_pred ccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeecccceeeEEEcCcccccccc--
Confidence 00 0001223445565555544
Q ss_pred ccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee
Q psy10778 384 CAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA 462 (556)
Q Consensus 384 s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~ 462 (556)
++++..+++|+.||.|++||++.++.+..+.. | ...+.++++++ +++++++ .|+.|++||+. .+....+.
T Consensus 184 ~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~-~-~~~v~~~~~~~--~~l~s~s-----~d~~i~iwd~~~~~~~~~~~ 254 (342)
T d2ovrb2 184 QFDGIHVVSGSLDTSIRVWDVETGNCIHTLTG-H-QSLTSGMELKD--NILVSGN-----ADSTVKIWDIKTGQCLQTLQ 254 (342)
T ss_dssp EECSSEEEEEETTSCEEEEETTTCCEEEEECC-C-CSCEEEEEEET--TEEEEEE-----TTSCEEEEETTTCCEEEEEC
T ss_pred cCCCCEEEEEeCCCeEEEeecccceeeeEecc-c-ccceeEEecCC--CEEEEEc-----CCCEEEEEeccccccccccc
Confidence 44678999999999999999999999999998 8 88888887764 6899998 89999999997 55555553
Q ss_pred ----cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC----CCCCCeEEEEEecCCCEEEEEcCCC
Q psy10778 463 ----SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT----NVALPVIAVTYSCDSQHLYASNTEG 534 (556)
Q Consensus 463 ----~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l~~s~dg~~l~sgs~Dg 534 (556)
+...+.++.++ + +++++|+.||.|++||+.+++.++.+.. +|...|++++|+|++.+|++|+.||
T Consensus 255 ~~~~~~~~~~~~~~~----~---~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dG 327 (342)
T d2ovrb2 255 GPNKHQSAVTCLQFN----K---NFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327 (342)
T ss_dssp STTSCSSCEEEEEEC----S---SEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSS
T ss_pred ccceeeeceeecccC----C---CeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCC
Confidence 34566777665 4 6899999999999999999999888742 5677899999999999999999998
Q ss_pred c----EEEEEcCC
Q psy10778 535 L----VIIWESSS 543 (556)
Q Consensus 535 ~----V~vwdl~~ 543 (556)
+ |++||+..
T Consensus 328 t~~~~l~~~Df~~ 340 (342)
T d2ovrb2 328 TEETKLLVLDFDV 340 (342)
T ss_dssp SSCCEEEEEECCC
T ss_pred CCeeEEEEEeCCC
Confidence 5 99999864
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.94 E-value=4e-25 Score=219.80 Aligned_cols=228 Identities=17% Similarity=0.143 Sum_probs=178.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc---------------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNAST--------------- 359 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~--------------- 359 (556)
+|++|+.||+|++||..+++.+..+. +|.+.|++++|+++ .+|++|+.||+|++|+.......
T Consensus 25 ~l~tgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~ 102 (355)
T d1nexb2 25 YVITGADDKMIRVYDSINKKFLLQLS-GHDGGVWALKYAHG-GILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDI 102 (355)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEE-CCSSCEEEEEEETT-TEEEEEETTCCEEEEETTTTEEEEEECCCSSCEEEEEE
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEE-CCCCCEEEEEEcCC-CEEEEEeccccccccccccccccccccccccccccccc
Confidence 89999999999999999988887776 89999999999986 58999999999998876432100
Q ss_pred ---------------cccc-------------------------------------------------------------
Q psy10778 360 ---------------NKIE------------------------------------------------------------- 363 (556)
Q Consensus 360 ---------------~~~~------------------------------------------------------------- 363 (556)
+...
T Consensus 103 ~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~ 182 (355)
T d1nexb2 103 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNT 182 (355)
T ss_dssp EEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSC
T ss_pred ccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccccccccccccceeeeecccce
Confidence 0000
Q ss_pred -------ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEE
Q psy10778 364 -------FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIAS 436 (556)
Q Consensus 364 -------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s 436 (556)
..+.+....++...+.++.+++++..+++++.||+|++||+.++..+..+.. | ...|.++++++ +.|++
T Consensus 183 i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~-h-~~~v~~~~~~~--~~l~~ 258 (355)
T d1nexb2 183 LIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG-H-TALVGLLRLSD--KFLVS 258 (355)
T ss_dssp EEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC-C-SSCCCEEEECS--SEEEE
T ss_pred eeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc-c-ccccccccccc--ceeee
Confidence 0011123345667788899999999999999999999999999999999999 9 89999999874 68999
Q ss_pred EeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEE-EeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCC
Q psy10778 437 VLQTTKTGGSILRLHTIN-AQLITSLASELRITSVT-FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALP 514 (556)
Q Consensus 437 ~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~-~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~ 514 (556)
++ .|+.|++||++ +..... .+...+.+++ ++ +++ +++++| .||.|++||+.+++++.....+|..+
T Consensus 259 ~~-----~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~--~~~---~~l~~g-~d~~i~vwd~~tg~~~~~~~~~~~~~ 326 (355)
T d1nexb2 259 AA-----ADGSIRGWDANDYSRKFS-YHHTNLSAITTFY--VSD---NILVSG-SENQFNIYNLRSGKLVHANILKDADQ 326 (355)
T ss_dssp EC-----TTSEEEEEETTTCCEEEE-EECTTCCCCCEEE--ECS---SEEEEE-ETTEEEEEETTTCCBCCSCTTTTCSE
T ss_pred ee-----cccccccccccccceecc-cccCCceEEEEEc--CCC---CEEEEE-eCCEEEEEECCCCCEEEEEecCCCCC
Confidence 98 89999999998 443333 3444555544 45 566 666666 48999999999999886544478999
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
|++++|+|+ ..+++++.||.++||.+
T Consensus 327 V~~v~~~~~-~~~~~~s~dg~~~l~~~ 352 (355)
T d1nexb2 327 IWSVNFKGK-TLVAAVEKDGQSFLEIL 352 (355)
T ss_dssp EEEEEEETT-EEEEEEESSSCEEEEEE
T ss_pred EEEEEEcCC-eEEEEEECCCcEEEEEE
Confidence 999999987 57888999999776654
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9.6e-24 Score=203.73 Aligned_cols=222 Identities=19% Similarity=0.287 Sum_probs=176.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCccccc-----------
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIE----------- 363 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~----------- 363 (556)
+|++|+.||+|+|||+++++.+..+. +|.+.|++++| ++++|++|+.||.|++|++..+.......
T Consensus 27 ~l~sgs~Dg~i~vWd~~~~~~~~~l~-~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (293)
T d1p22a2 27 KIVSGLRDNTIKIWDKNTLECKRILT-GHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRF 103 (293)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEEC-CCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEEC
T ss_pred EEEEEeCCCeEEEEECCCCcEEEEEe-cCCCCEeeeec--ccceeecccccccccccccccccccccccccccccccccc
Confidence 89999999999999999998888886 89999999887 57899999999999999986542110000
Q ss_pred -----------------------ccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCC
Q psy10778 364 -----------------------FCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNT 420 (556)
Q Consensus 364 -----------------------~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~ 420 (556)
.......+..|...|.++.+.+ ..+++++.|+.+++||+++++.+..+.. + ..
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~--~~~~~~s~d~~i~~~d~~~~~~~~~~~~-~-~~ 179 (293)
T d1p22a2 104 NNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWNTSTCEFVRTLNG-H-KR 179 (293)
T ss_dssp CTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEET--TEEEEEETTSEEEEEETTTCCEEEEEEC-C-SS
T ss_pred cccceeecccccceeEeeccccccccccccccccccccccceecc--cccccccCCCceeeecCCCCcEEEEEcc-c-cc
Confidence 0011233456777787777654 5788999999999999999999999988 7 77
Q ss_pred CeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 421 PVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 421 ~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
.+..+.++ +..+++++ .|+.|++||++ +..+.... +...+.+ ++ +++ .+|++|+.||.|++||+
T Consensus 180 ~v~~~~~~--~~~l~~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~v~~--~~--~~~---~~l~sg~~dg~i~iwd~ 245 (293)
T d1p22a2 180 GIACLQYR--DRLVVSGS-----SDNTIRLWDIECGACLRVLEGHEELVRC--IR--FDN---KRIVSGAYDGKIKVWDL 245 (293)
T ss_dssp CEEEEEEE--TTEEEEEE-----TTSCEEEEETTTCCEEEEECCCSSCEEE--EE--CCS---SEEEEEETTSCEEEEEH
T ss_pred ccccccCC--CCeEEEec-----CCCEEEEEecccceeeeeecccceeeee--cc--ccc---eEEEEEcCCCEEEEEEC
Confidence 88777776 56889988 89999999997 66666664 3444544 34 556 79999999999999997
Q ss_pred CC---------CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 499 YK---------LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 499 ~~---------~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
.. ...+..+. +|.+.|++++|+ +++|++|+.||+|++||
T Consensus 246 ~~~~~~~~~~~~~~~~~~~-~H~~~V~~v~~d--~~~l~s~s~Dg~i~iWD 293 (293)
T d1p22a2 246 VAALDPRAPAGTLCLRTLV-EHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293 (293)
T ss_dssp HHHTSTTSCTTTTEEEEEC-CCSSCCCCEEEC--SSCEEECCSSSEEEEEC
T ss_pred CCCccccccCCceeeEEec-CCCCCEEEEEEc--CCEEEEEecCCEEEEeC
Confidence 32 34677777 899999999985 67899999999999997
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.2e-23 Score=215.85 Aligned_cols=245 Identities=15% Similarity=0.188 Sum_probs=179.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCc----ce-EcCCCCCceEEEEEc------C-CCCEEEEEeCCCcEEEEEeeeccCcccc
Q psy10778 295 MICWNECDNLIRLKMSKELPAT----PV-IRPPLGATIATATTA------P-DCHTLWLGLTSGNILVYEYELNASTNKI 362 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~----~~-~~~~h~~~V~~i~~s------~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~ 362 (556)
++++|+.|++|++|+..+.+.. .. ....|...+..+... . ++..+++++.||.|++|++.........
T Consensus 26 ~l~S~S~D~~iriWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~dg~v~~w~~~~~~~~~~~ 105 (393)
T d1sq9a_ 26 FTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKV 105 (393)
T ss_dssp EEEEEETTSEEEEEESBCCTTCCGGGGEEEEECCTTCEEEEEEEEEEETTTEEEEEEEEEETTSCEEEEEEEECTTTCCE
T ss_pred EEEEEECCCeEEEEECCCCCCCcccceeEeeeeccCCceEeeeEeeeccCCCCCcEEEEEeCCCcEEEEEccCCCceeee
Confidence 7889999999999998754321 11 111355444333321 1 2357889999999999998865322111
Q ss_pred ccc-CCCeEeeCCCccEEEEEEccCC-----CEEEEEcCCCcEEEEeCCCCe---------------EEEEe---CCCCC
Q psy10778 363 EFC-KPPTILLGHSACVTDLYLCAGF-----SVAVSSSEDGTCLLWDINTIG---------------YIREI---PCVDP 418 (556)
Q Consensus 363 ~~~-~~~~~l~~h~~~V~~l~~s~~~-----~~l~sgs~Dg~I~iwdl~~~~---------------~v~~l---~~~h~ 418 (556)
... ........+...+..++|.++. .++++++.||++++|++.... ..... .. +
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~- 183 (393)
T d1sq9a_ 106 IFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMT-P- 183 (393)
T ss_dssp EEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSS-S-
T ss_pred eccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccC-C-
Confidence 100 0011112355667888887753 578999999999999974310 11111 22 3
Q ss_pred CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-------cCCCeEEEEEeeCCCCCcceEEEEEeCC
Q psy10778 419 NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-------SELRITSVTFSNAPEGVSQNVIVTGHSD 490 (556)
Q Consensus 419 ~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-------~~~~i~~i~~s~~pdg~~~~~l~tg~~d 490 (556)
...+.+++|+|++ .|++++ .|++|++||+. ++.+..+. |...|.+++|+ |+| ++|++|+.|
T Consensus 184 ~~~~~~v~~s~dg-~lasgs-----~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~s--pdg---~~l~sgs~D 252 (393)
T d1sq9a_ 184 SQFATSVDISERG-LIATGF-----NNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS--PQG---SLLAIAHDS 252 (393)
T ss_dssp CCCCCEEEECTTS-EEEEEC-----TTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC--SST---TEEEEEEEE
T ss_pred CCcEEEEEECCCC-EEEEEe-----CCCcEEEEeecccccccccccccccccccceEEEcccc--ccc---ceeeeecCC
Confidence 5668999999986 888998 89999999997 77665543 56899999999 899 899999988
Q ss_pred C---eEEEEeCCCCeEEEEecC------------CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeeec
Q psy10778 491 G---TIQLWSGYKLAHLLTLNT------------NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 491 g---~I~iwd~~~~~~~~~~~~------------~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~~ 552 (556)
+ .|++||+.+++.+..+.. +|...|++++|+||+++|++|+.||+|++||+++++.+.++..
T Consensus 253 ~t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~g 329 (393)
T d1sq9a_ 253 NSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNM 329 (393)
T ss_dssp TTEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred CCcceeeecccccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECC
Confidence 6 599999999988887742 6889999999999999999999999999999999888777653
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=99.92 E-value=3.4e-23 Score=203.03 Aligned_cols=221 Identities=10% Similarity=0.134 Sum_probs=170.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCc--ceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPAT--PVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~--~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
-+++++.|+.+++|+....... ......+...+.+++++++++.+++++ ++.+++|+.... ...
T Consensus 68 ~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~-~~~i~~~~~~~~-----------~~~-- 133 (299)
T d1nr0a2 68 DLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC-YKHIAIYSHGKL-----------TEV-- 133 (299)
T ss_dssp CEEEEETTTEEEEECSSSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEE-SSEEEEEETTEE-----------EEE--
T ss_pred eeecccceeeEEEeccCCccccccccccccccccccccccccccccccccc-cccccccccccc-----------ccc--
Confidence 4555677999999998654322 112225778899999999998777765 578999985432 112
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.....+.+++|+|+++++++|+.||.+++||+++++.... ... | ...|++++|+|++..+++++ .++.|++|
T Consensus 134 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~-~-~~~i~~~~~~~~~~~l~~~~-----~d~~i~~~ 206 (299)
T d1nr0a2 134 PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIV-H-PAEITSVAFSNNGAFLVATD-----QSRKVIPY 206 (299)
T ss_dssp ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEE-C-SSCEEEEEECTTSSEEEEEE-----TTSCEEEE
T ss_pred cccccccccccccccccccccccccccccccccccccccccccc-c-cccccccccccccccccccc-----cccccccc
Confidence 2345678999999999999999999999999988765432 334 6 78999999999999999998 89999999
Q ss_pred EeC-CcEEEEe----ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCC
Q psy10778 452 TIN-AQLITSL----ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 452 di~-g~~i~~~----~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg 524 (556)
|+. +..+... .|...|++++|+ |++ ++|++|+.||.|++||+.++.. +......+...+.++.+ +++
T Consensus 207 ~~~~~~~~~~~~~~~~h~~~v~~l~~s--~~~---~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~ 280 (299)
T d1nr0a2 207 SVANNFELAHTNSWTFHTAKVACVSWS--PDN---VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNE 280 (299)
T ss_dssp EGGGTTEESCCCCCCCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEEEE-EET
T ss_pred ccccccccccccccccccccccccccc--ccc---cceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEEEE-CCC
Confidence 996 5544333 257899999999 899 8999999999999999987653 23333234456766655 567
Q ss_pred CEEEEEcCCCcEEEEEcC
Q psy10778 525 QHLYASNTEGLVIIWESS 542 (556)
Q Consensus 525 ~~l~sgs~Dg~V~vwdl~ 542 (556)
++|++|+.||.|++||++
T Consensus 281 ~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 281 TTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp TEEEEEETTSCEEEEECC
T ss_pred CEEEEEeCCCEEEEEecc
Confidence 899999999999999985
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=5.6e-24 Score=207.66 Aligned_cols=226 Identities=12% Similarity=0.087 Sum_probs=170.8
Q ss_pred EEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccc-----------
Q psy10778 296 ICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEF----------- 364 (556)
Q Consensus 296 l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~----------- 364 (556)
|++|+.||+|++|+..++ ..+|...|.+++++++ ..+++++.|+++++|++...........
T Consensus 24 l~sgs~Dg~v~~Wd~~~~------~~~h~~~V~~~~~~~~-~~~~s~s~D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~ 96 (287)
T d1pgua2 24 LISGSYDGRIMEWSSSSM------HQDHSNLIVSLDNSKA-QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 96 (287)
T ss_dssp TEEEETTSCEEETTTTEE------ECCCCSCEEEEECCST-TCCEEEETTTEEEETTEEEEECSSCEEEEEECSSSEEEE
T ss_pred EEEEeCCCeEEEEECCCC------CCCCCCCEEEEEecCC-CeEEEEeeccccccccccccccccceeeeeeccCCceEE
Confidence 778999999999998753 2379999999999876 5689999999999998875421110000
Q ss_pred --------------cCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC
Q psy10778 365 --------------CKPPTILLGHSACVTDLYLCAGFSVAVSSSED-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE 429 (556)
Q Consensus 365 --------------~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp 429 (556)
.+.+..+. +... +.++++++..+++++.| +.+++|++...+....+..++ ...+++++|+|
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~~~v~~~~~s~ 172 (287)
T d1pgua2 97 LTNDDDLLILQSFTGDIIKSVR-LNSP--GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPL-RAKPSYISISP 172 (287)
T ss_dssp EETTSEEEEEETTTCCEEEEEE-CSSC--EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCC-SSCEEEEEECT
T ss_pred Eeecccceeeeccceeeeeecc-ccce--eeeeeccCcceeeeccccceeeeeeccccceeeeeeecc-CCceeEEEecc
Confidence 01111111 1222 34556677777777666 579999998777666665435 78899999999
Q ss_pred CCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEe--ecCCCeEEEEEeeCCCCC-------cceEEEEEeCCCeEEEEeCC
Q psy10778 430 TNGEIASVLQTTKTGGSILRLHTIN-AQLITSL--ASELRITSVTFSNAPEGV-------SQNVIVTGHSDGTIQLWSGY 499 (556)
Q Consensus 430 ~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~--~~~~~i~~i~~s~~pdg~-------~~~~l~tg~~dg~I~iwd~~ 499 (556)
++.+|++++ .++.|++||+. ++..... .|...|.+++|+ |.+. ...++++|+.|+.|++||+.
T Consensus 173 ~~~~l~~g~-----~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~~~~--p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~ 245 (287)
T d1pgua2 173 SETYIAAGD-----VMGKILLYDLQSREVKTSRWAFRTSKINAISWK--PAEKGANEEEIEEDLVATGSLDTNIFIYSVK 245 (287)
T ss_dssp TSSEEEEEE-----TTSCEEEEETTTTEEEECCSCCCSSCEEEEEEC--CCC------CCSCCEEEEEETTSCEEEEESS
T ss_pred Ccccccccc-----ccccccceeecccccccccccccccccceeeec--ccccccccccCCCCeeEeecCCCeEEEEECC
Confidence 999999999 89999999997 5444432 467899999998 4321 12689999999999999987
Q ss_pred C-CeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 500 K-LAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 500 ~-~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
. .+.+..+. +|...|++++|++++ .|++++.||.|++|++
T Consensus 246 ~~~~~~~~~~-~h~~~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 246 RPMKIIKALN-AHKDGVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp CTTCCEEETT-SSTTCEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred CCCeEEEEeC-CCCCCeEEEEECCCC-EEEEEECCCeEEEEEE
Confidence 6 45666665 899999999999986 5888999999999996
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=1.5e-22 Score=199.75 Aligned_cols=213 Identities=17% Similarity=0.246 Sum_probs=163.7
Q ss_pred EeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC
Q psy10778 308 KMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF 387 (556)
Q Consensus 308 w~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~ 387 (556)
|+....+...+++ +|.+.|.+ +++++|++||||+.||+|+|||+.++ +++.++.+|.+.|.+++|+++
T Consensus 1 W~~~~~~~~~~l~-GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~---------~~~~~~~~h~~~V~~v~~~~~- 68 (342)
T d2ovrb2 1 WRRGELKSPKVLK-GHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTG---------KCLRTLVGHTGGVWSSQMRDN- 68 (342)
T ss_dssp HHHSCCCCCEEEE-CSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTC---------CEEEECCCCSSCEEEEEEETT-
T ss_pred CCCCCCCcCEEEC-CcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCC---------CEEEEEeCCCCCEEEEEeCCC-
Confidence 3344445555666 89999865 35667899999999999999999876 567889999999999999874
Q ss_pred CEEEEEcCCCcEEEEeCCCCeEEE--------------------------------------------------------
Q psy10778 388 SVAVSSSEDGTCLLWDINTIGYIR-------------------------------------------------------- 411 (556)
Q Consensus 388 ~~l~sgs~Dg~I~iwdl~~~~~v~-------------------------------------------------------- 411 (556)
++++|+.|+++++|+........
T Consensus 69 -~l~s~s~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (342)
T d2ovrb2 69 -IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDG 147 (342)
T ss_dssp -EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECS
T ss_pred -ccccceecccccccccccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeecccc
Confidence 89999999998888865432111
Q ss_pred ------------------------EeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCC
Q psy10778 412 ------------------------EIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SEL 465 (556)
Q Consensus 412 ------------------------~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~ 465 (556)
.+.. | ......+++++..+++++ .|+.|++||++ ++.+.... +..
T Consensus 148 ~~~~~~~~d~~i~~~d~~~~~~~~~~~~-~---~~~~~~~~~~~~~l~s~~-----~dg~i~~~d~~~~~~~~~~~~~~~ 218 (342)
T d2ovrb2 148 RRVVSGAYDFMVKVWDPETETCLHTLQG-H---TNRVYSLQFDGIHVVSGS-----LDTSIRVWDVETGNCIHTLTGHQS 218 (342)
T ss_dssp SCEEEEETTSCEEEEEGGGTEEEEEECC-C---SSCEEEEEECSSEEEEEE-----TTSCEEEEETTTCCEEEEECCCCS
T ss_pred ceeeeecCCCeEEEeecccceeeEEEcC-c---ccccccccCCCCEEEEEe-----CCCeEEEeecccceeeeEeccccc
Confidence 1111 1 123344555678888888 89999999997 67776664 567
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
.+.+++++ + ++|++|+.||.|++||+...+....+.. .|...+.++.++ +.++++|+.||.|++||+++
T Consensus 219 ~v~~~~~~----~---~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~s~s~Dg~i~iwd~~t 289 (342)
T d2ovrb2 219 LTSGMELK----D---NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKT 289 (342)
T ss_dssp CEEEEEEE----T---TEEEEEETTSCEEEEETTTCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTT
T ss_pred ceeEEecC----C---CEEEEEcCCCEEEEEecccccccccccccceeeeceeecccC--CCeeEEEcCCCEEEEEECCC
Confidence 78888776 3 5899999999999999999888887764 455666666665 67999999999999999999
Q ss_pred CCCcCeee
Q psy10778 544 HNRTPKFL 551 (556)
Q Consensus 544 ~~~~~~~~ 551 (556)
++.+..+.
T Consensus 290 g~~i~~~~ 297 (342)
T d2ovrb2 290 GEFIRNLV 297 (342)
T ss_dssp CCEEEEEE
T ss_pred CCEEEEEe
Confidence 88776654
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=1.4e-22 Score=207.80 Aligned_cols=222 Identities=12% Similarity=0.128 Sum_probs=164.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEc---------CCCCCceEEEEEcCC-----CCEEEEEeCCCcEEEEEeeeccCcc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIR---------PPLGATIATATTAPD-----CHTLWLGLTSGNILVYEYELNASTN 360 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~---------~~h~~~V~~i~~s~d-----g~~l~tgs~Dg~I~vwd~~~~~~~~ 360 (556)
++++++.||.|++|+........... ..+...+..+++.++ +.++++++.||++++|++.......
T Consensus 81 ~~~s~~~dg~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~ 160 (393)
T d1sq9a_ 81 LVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADES 160 (393)
T ss_dssp EEEEEETTSCEEEEEEEECTTTCCEEEEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHH
T ss_pred EEEEEeCCCcEEEEEccCCCceeeeeccccceeeeccCCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCccc
Confidence 78899999999999876443221111 123456778888765 4688999999999999987542111
Q ss_pred ccccc---------CCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEe------CCCCCCCCeeEE
Q psy10778 361 KIEFC---------KPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREI------PCVDPNTPVSHV 425 (556)
Q Consensus 361 ~~~~~---------~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l------~~~h~~~~V~~l 425 (556)
..... ........+...+.+++|+|++ ++++|+.||+|++||+.+++.+..+ .+ | ..+|+++
T Consensus 161 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~-h-~~~V~~l 237 (393)
T d1sq9a_ 161 NSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMIN-N-SNSIRSV 237 (393)
T ss_dssp HHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---C-C-CCCEEEE
T ss_pred ceeeeeeccceecccceecccCCCCcEEEEEECCCC-EEEEEeCCCcEEEEeeccccccccccccccccc-c-cceEEEc
Confidence 11000 0111223455678999999987 8999999999999999999877654 34 7 7899999
Q ss_pred EEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee--------------cCCCeEEEEEeeCCCCCcceEEEEEeCC
Q psy10778 426 TMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA--------------SELRITSVTFSNAPEGVSQNVIVTGHSD 490 (556)
Q Consensus 426 ~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~--------------~~~~i~~i~~s~~pdg~~~~~l~tg~~d 490 (556)
+|+|++.+|++++.+. ..+.|++||++ ++.+..+. |...|++++|+ |++ ++|++|+.|
T Consensus 238 ~~spdg~~l~sgs~D~--t~~~i~lwd~~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fs--pd~---~~l~S~s~D 310 (393)
T d1sq9a_ 238 KFSPQGSLLAIAHDSN--SFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN--DSG---ETLCSAGWD 310 (393)
T ss_dssp EECSSTTEEEEEEEET--TEEEEEEEETTTCCEEEEECBC--------CCBSBSSCEEEEEEC--SSS---SEEEEEETT
T ss_pred ccccccceeeeecCCC--CcceeeecccccceeeeeeccccccccceeeeecccCceeeeccC--CCC---CeeEEECCC
Confidence 9999999999998311 12369999997 77776652 67889999999 899 899999999
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeE----EEEEecCCCEE
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVI----AVTYSCDSQHL 527 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~----~l~~s~dg~~l 527 (556)
|+|++||+.+++++.++. +|...|. .++|++++..+
T Consensus 311 ~~v~vWd~~~g~~~~~l~-gH~~~v~~~~~~~~~~~~~~~~ 350 (393)
T d1sq9a_ 311 GKLRFWDVKTKERITTLN-MHCDDIEIEEDILAVDEHGDSL 350 (393)
T ss_dssp SEEEEEETTTTEEEEEEE-CCGGGCSSGGGCCCBCTTSCBC
T ss_pred CEEEEEECCCCCEEEEEC-CcCCcccCCccEEEECCCCCEE
Confidence 999999999999999998 7765443 24455554443
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.90 E-value=2.6e-22 Score=200.83 Aligned_cols=183 Identities=9% Similarity=0.001 Sum_probs=150.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCC--cEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSG--NILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg--~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
++|+++ +|.|++|+.++++..+ ..|...|++++|+|||+.|++++.+. .|++|+..++ ....+.
T Consensus 17 ~~a~~~-~g~v~v~d~~~~~~~~---~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~----------~~~~~~ 82 (360)
T d1k32a3 17 LIAFVS-RGQAFIQDVSGTYVLK---VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTG----------KAEKFE 82 (360)
T ss_dssp CEEEEE-TTEEEEECTTSSBEEE---CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTC----------CEEECC
T ss_pred EEEEEE-CCeEEEEECCCCcEEE---ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCC----------cEEEee
Confidence 666654 5799999998775443 47999999999999999998876553 7999998764 345678
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-----cCCCCe
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT-----KTGGSI 447 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~-----~~~d~~ 447 (556)
.|...|.+++|+|++++|++++.++.+++|++.+++....+.. + ...+.+++|+|+|++|+.+.... ...++.
T Consensus 83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~ 160 (360)
T d1k32a3 83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERS-R-EAMITDFTISDNSRFIAYGFPLKHGETDGYVMQA 160 (360)
T ss_dssp CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEEC-S-SSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEE
T ss_pred CCCceEEeeeecccccccceeccccccccccccccceeeeeec-c-cccccchhhccceeeeeeeccccccceeeccccc
Confidence 8999999999999999999999999999999999998888887 7 78899999999999998765432 124567
Q ss_pred EEEEEeCC-cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeC
Q psy10778 448 LRLHTINA-QLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSG 498 (556)
Q Consensus 448 I~iwdi~g-~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~ 498 (556)
+++||+.+ +......+...+.+++|+ |+| +.|++++.++.+++|+.
T Consensus 161 ~~v~d~~~~~~~~~~~~~~~~~~~~~s--pdg---~~l~~~s~~~~~~~~d~ 207 (360)
T d1k32a3 161 IHVYDMEGRKIFAATTENSHDYAPAFD--ADS---KNLYYLSYRSLDPSPDR 207 (360)
T ss_dssp EEEEETTTTEEEECSCSSSBEEEEEEC--TTS---CEEEEEESCCCCCEECS
T ss_pred eeeeccccCceeeeccccccccccccc--CCC---CEEEEEeCCCceEcccc
Confidence 99999984 444444667788889999 888 88898888888888874
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.90 E-value=3.3e-22 Score=196.77 Aligned_cols=214 Identities=12% Similarity=0.169 Sum_probs=150.6
Q ss_pred CCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCC-CEEEEEcCCCcE
Q psy10778 321 PPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGF-SVAVSSSEDGTC 399 (556)
Q Consensus 321 ~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~-~~l~sgs~Dg~I 399 (556)
.+|.+.|++++|+|++++||+|+.||+|+|||+...... .......+|.++|++++|++++ .+|++|+.||+|
T Consensus 8 ~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~------~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~v 81 (342)
T d1yfqa_ 8 QAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKN------VDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGEI 81 (342)
T ss_dssp SCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTE------EEEEEEEECSSCEEEEEEEESSSEEEEEEETTSCE
T ss_pred CCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcc------eEEEEecCCCCCEEEEEEeCCCCCEEEEcccccce
Confidence 489999999999999999999999999999999865211 1123345799999999999865 589999999999
Q ss_pred EEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-C----cEEEEee---cCCCeEEEE
Q psy10778 400 LLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-A----QLITSLA---SELRITSVT 471 (556)
Q Consensus 400 ~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g----~~i~~~~---~~~~i~~i~ 471 (556)
++|++..+........ +.........+.++...+++++ .++.+++||++ + ....... .........
T Consensus 82 ~~w~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (342)
T d1yfqa_ 82 LKVDLIGSPSFQALTN-NEANLGICRICKYGDDKLIAAS-----WDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFT 155 (342)
T ss_dssp EEECSSSSSSEEECBS-CCCCSCEEEEEEETTTEEEEEE-----TTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEE
T ss_pred eeeecccccccccccc-cccccccccccccccccccccc-----cccccceeeccccccceeeecccccccccceeeeee
Confidence 9999998877776665 4134455666677788888888 89999999985 1 1111111 011222333
Q ss_pred EeeCCCCCcceEEEEEeCCCeEEEEeCCCCe-------------------------------------------------
Q psy10778 472 FSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA------------------------------------------------- 502 (556)
Q Consensus 472 ~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~------------------------------------------------- 502 (556)
+. +.+ ..+++++.||.|++||+...+
T Consensus 156 ~~--~~~---~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~ 230 (342)
T d1yfqa_ 156 MD--TNS---SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDY 230 (342)
T ss_dssp EE--ECS---SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCST
T ss_pred ee--ccC---CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCccee
Confidence 33 333 455555555555555542110
Q ss_pred ------EEEEec-----CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 503 ------HLLTLN-----TNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 503 ------~~~~~~-----~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
...... .+|...|++++|+|++++|++|+.||.|++||+.+++++..+.
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~ 290 (342)
T d1yfqa_ 231 NSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA 290 (342)
T ss_dssp TCTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred eccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence 000000 0345578999999999999999999999999999977665543
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.89 E-value=6.1e-22 Score=196.45 Aligned_cols=199 Identities=19% Similarity=0.206 Sum_probs=159.0
Q ss_pred CCCCce-EEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEE
Q psy10778 322 PLGATI-ATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCL 400 (556)
Q Consensus 322 ~h~~~V-~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~ 400 (556)
+|.+.| +|+++ ++++||||+.||+|+|||+.++ +++.++.+|.+.|++++|+++ ..|++|+.||+|+
T Consensus 10 GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~---------~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~ 77 (355)
T d1nexb2 10 GHMTSVITCLQF--EDNYVITGADDKMIRVYDSINK---------KFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVR 77 (355)
T ss_dssp CCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTT---------EEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEE
T ss_pred CcCCCcEEEEEE--CCCEEEEEeCCCeEEEEECCCC---------cEEEEEECCCCCEEEEEEcCC-CEEEEEecccccc
Confidence 898876 66655 5789999999999999999866 567889999999999999985 5899999999999
Q ss_pred EEeCCCCeEEEEeCCCC-CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC------------------------
Q psy10778 401 LWDINTIGYIREIPCVD-PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA------------------------ 455 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h-~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g------------------------ 455 (556)
+|++...+....... . .........+++++..+++++ .|+.|++||++.
T Consensus 78 iw~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-----~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (355)
T d1nexb2 78 VWDIKKGCCTHVFEG-HNSTVRCLDIVEYKNIKYIVTGS-----RDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENP 151 (355)
T ss_dssp EEETTTTEEEEEECC-CSSCEEEEEEEEETTEEEEEEEE-----TTSEEEEEECCC-----------CCCEEESCTTTCT
T ss_pred ccccccccccccccc-ccccccccccccccccceeeeec-----CCCcEEEEEccCCceeccccccceeccceecccccc
Confidence 999998877766554 2 022334556677777788877 677777777631
Q ss_pred ----------------------------------------cEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEE
Q psy10778 456 ----------------------------------------QLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQ 494 (556)
Q Consensus 456 ----------------------------------------~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~ 494 (556)
+.+.... +...+.++.++ +++ ..+++++.||.|+
T Consensus 152 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~d~~i~ 226 (355)
T d1nexb2 152 YFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYD--HER---KRCISASMDTTIR 226 (355)
T ss_dssp TEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTT---TEEEEEETTSCEE
T ss_pred ceeeeeeeccccccccccccceeeeecccceeeeeecccccceeeeecccccccccccc--ccc---eeeecccccceEE
Confidence 1111111 23456677888 777 8999999999999
Q ss_pred EEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCC
Q psy10778 495 LWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNR 546 (556)
Q Consensus 495 iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~ 546 (556)
+||..++..+..+. +|...|.+++++ +++|++|+.||.|++||+++..+
T Consensus 227 i~d~~~~~~~~~~~-~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~~~~~ 275 (355)
T d1nexb2 227 IWDLENGELMYTLQ-GHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSR 275 (355)
T ss_dssp EEETTTCCEEEEEC-CCSSCCCEEEEC--SSEEEEECTTSEEEEEETTTCCE
T ss_pred eeeccccccccccc-cccccccccccc--cceeeeeecccccccccccccce
Confidence 99999999999998 899999999987 56899999999999999988654
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.86 E-value=1.5e-19 Score=175.83 Aligned_cols=231 Identities=12% Similarity=0.090 Sum_probs=177.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEE-EEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLW-LGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~-tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
..++++.|++|.+||.++++.+..+.. ...+..++++|||++|+ +++.++.|++||+.++ +.+..+..
T Consensus 4 ~yV~~~~~~~v~v~D~~t~~~~~~i~~--g~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~---------~~~~~~~~ 72 (301)
T d1l0qa2 4 AYIANSESDNISVIDVTSNKVTATIPV--GSNPMGAVISPDGTKVYVANAHSNDVSIIDTATN---------NVIATVPA 72 (301)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEEC--SSSEEEEEECTTSSEEEEEEGGGTEEEEEETTTT---------EEEEEEEC
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEEC--CCCceEEEEeCCCCEEEEEECCCCEEEEEECCCC---------ceeeeeec
Confidence 345678899999999999988877763 35578999999999874 6678899999999876 44566666
Q ss_pred CCccEEEEEEccCCCE-EEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGFSV-AVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~-l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
|. .+..+++++++.. ++++..++.+.+|+..+++....+.. .....+++++|++..++..+. .++.+.+|+
T Consensus 73 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~dg~~~~~~~~----~~~~~~~~~ 144 (301)
T d1l0qa2 73 GS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGTVKT---GKSPLGLALSPDGKKLYVTNN----GDKTVSVIN 144 (301)
T ss_dssp SS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEEC---SSSEEEEEECTTSSEEEEEET----TTTEEEEEE
T ss_pred cc-cccccccccccccccccccccceeeecccccceeeeeccc---cccceEEEeecCCCeeeeeec----cccceeeee
Confidence 65 4688999999985 55667788999999999999998887 577899999999998876663 567788887
Q ss_pred eC-CcEEEEeec------------------------------------------CCCeEEEEEeeCCCCCcceEEEEEe-
Q psy10778 453 IN-AQLITSLAS------------------------------------------ELRITSVTFSNAPEGVSQNVIVTGH- 488 (556)
Q Consensus 453 i~-g~~i~~~~~------------------------------------------~~~i~~i~~s~~pdg~~~~~l~tg~- 488 (556)
.. +..+..+.. ...+..++++ +++ +.++++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~v~~~ 219 (301)
T d1l0qa2 145 TVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVIDTVKVEAAPSGIAVN--PEG---TKAYVTNV 219 (301)
T ss_dssp TTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECSSEEEEEEEC--TTS---SEEEEEEE
T ss_pred ccccceeeecccCCCceEEEeeccccceeeecccccccccccccceeeeecccccCCcceeecc--ccc---cccccccc
Confidence 64 332222211 2234556666 666 4444433
Q ss_pred --CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE-EEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 489 --SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL-YASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 489 --~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l-~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.++.|++||..+++.+..+. +...+++++|+|||++| ++++.|+.|++||+++++.+.++.
T Consensus 220 ~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 220 DKYFNTVSMIDTGTNKITARIP--VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CSSCCEEEEEETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred cceeeeeeeeecCCCeEEEEEc--CCCCEEEEEEeCCCCEEEEEECCCCeEEEEECCCCeEEEEEe
Confidence 34789999999999999887 34678999999999976 577889999999999987766553
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.86 E-value=9.5e-20 Score=175.22 Aligned_cols=197 Identities=18% Similarity=0.282 Sum_probs=156.7
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+|...|+|++ ++|++||||+.||+|+|||+.++ +++.++.+|.+.|++++| ++++|++|+.||.|++
T Consensus 13 ~~~~~V~c~~--~d~~~l~sgs~Dg~i~vWd~~~~---------~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~ 79 (293)
T d1p22a2 13 ETSKGVYCLQ--YDDQKIVSGLRDNTIKIWDKNTL---------ECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRV 79 (293)
T ss_dssp SSCCCEEEEE--CCSSEEEEEESSSCEEEEESSSC---------CEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEE
T ss_pred CCCCCEEEEE--EcCCEEEEEeCCCeEEEEECCCC---------cEEEEEecCCCCEeeeec--ccceeecccccccccc
Confidence 6788999876 47899999999999999999876 667899999999999987 5789999999999999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-c---EEEEe-ecCCCeEEEEEeeCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-Q---LITSL-ASELRITSVTFSNAP 476 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-~---~i~~~-~~~~~i~~i~~s~~p 476 (556)
|++..+........ + . .......+....++++. .++.+.+|+... . ..... .+...+.++.+. +
T Consensus 80 ~~~~~~~~~~~~~~-~-~--~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~ 148 (293)
T d1p22a2 80 WDVNTGEMLNTLIH-H-C--EAVLHLRFNNGMMVTCS-----KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--D 148 (293)
T ss_dssp EESSSCCEEEEECC-C-C--SCEEEEECCTTEEEEEE-----TTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEEE--T
T ss_pred cccccccccccccc-c-c--cccccccccccceeecc-----cccceeEeeccccccccccccccccccccccceec--c
Confidence 99999888777765 3 2 23344556667888888 899999999862 1 22222 356677777766 3
Q ss_pred CCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCee
Q psy10778 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~ 550 (556)
..+++++.|+.|++||..+++.+..+. ++...+..+.++ +..+++++.||.|++||+++...+..+
T Consensus 149 -----~~~~~~s~d~~i~~~d~~~~~~~~~~~-~~~~~v~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~ 214 (293)
T d1p22a2 149 -----KYIVSASGDRTIKVWNTSTCEFVRTLN-GHKRGIACLQYR--DRLVVSGSSDNTIRLWDIECGACLRVL 214 (293)
T ss_dssp -----TEEEEEETTSEEEEEETTTCCEEEEEE-CCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEE
T ss_pred -----cccccccCCCceeeecCCCCcEEEEEc-ccccccccccCC--CCeEEEecCCCEEEEEecccceeeeee
Confidence 467888889999999999999888887 677788777765 567899999999999999886655443
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.86 E-value=7.6e-21 Score=185.08 Aligned_cols=196 Identities=16% Similarity=0.152 Sum_probs=151.1
Q ss_pred cceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC
Q psy10778 316 TPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 316 ~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~ 395 (556)
+..+. +|..+|++++|+| |+||+.||+|++||+.+. ..+|...|.++++++++ .+++++.
T Consensus 6 i~~l~-gH~~~I~~l~~s~----l~sgs~Dg~v~~Wd~~~~--------------~~~h~~~V~~~~~~~~~-~~~s~s~ 65 (287)
T d1pgua2 6 LKTIS-GHNKGITALTVNP----LISGSYDGRIMEWSSSSM--------------HQDHSNLIVSLDNSKAQ-EYSSISW 65 (287)
T ss_dssp EEEEC-CCSSCEEEEETTT----TEEEETTSCEEETTTTEE--------------ECCCCSCEEEEECCSTT-CCEEEET
T ss_pred eEEEC-CCCCceEEEEECc----EEEEeCCCeEEEEECCCC--------------CCCCCCCEEEEEecCCC-eEEEEee
Confidence 44454 8999999999987 999999999999997653 35788889999888654 5788888
Q ss_pred CCcEEEEeCCCC----------------------------------eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC
Q psy10778 396 DGTCLLWDINTI----------------------------------GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT 441 (556)
Q Consensus 396 Dg~I~iwdl~~~----------------------------------~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~ 441 (556)
|+++++|++... +.+..+.. .. ...++++++..+++++.
T Consensus 66 D~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~--~~~~~~~~~~~~~v~~~-- 138 (287)
T d1pgua2 66 DDTLKVNGITKHEFGSQPKVASANNDGFTAVLTNDDDLLILQSFTGDIIKSVRL---NS--PGSAVSLSQNYVAVGLE-- 138 (287)
T ss_dssp TTEEEETTEEEEECSSCEEEEEECSSSEEEEEETTSEEEEEETTTCCEEEEEEC---SS--CEEEEEECSSEEEEEET--
T ss_pred ccccccccccccccccceeeeeeccCCceEEEeecccceeeeccceeeeeeccc---cc--eeeeeeccCcceeeecc--
Confidence 888888876431 11222221 12 23456777888888772
Q ss_pred cCCCCeEEEEEeC-CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEE
Q psy10778 442 KTGGSILRLHTIN-AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAV 518 (556)
Q Consensus 442 ~~~d~~I~iwdi~-g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l 518 (556)
.++.+++|++. .+..... .+...+++++|+ |++ .+|++|+.||.|++||+.+++.......+|..+|.++
T Consensus 139 --~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~~---~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~~~v~~~ 211 (287)
T d1pgua2 139 --EGNTIQVFKLSDLEVSFDLKTPLRAKPSYISIS--PSE---TYIAAGDVMGKILLYDLQSREVKTSRWAFRTSKINAI 211 (287)
T ss_dssp --TTSCEEEEETTEEEEEEECSSCCSSCEEEEEEC--TTS---SEEEEEETTSCEEEEETTTTEEEECCSCCCSSCEEEE
T ss_pred --ccceeeeeeccccceeeeeeeccCCceeEEEec--cCc---cccccccccccccceeeccccccccccccccccccee
Confidence 44679999987 3333333 356789999999 899 8999999999999999999887765444899999999
Q ss_pred EEecC----------CCEEEEEcCCCcEEEEEcCCCC
Q psy10778 519 TYSCD----------SQHLYASNTEGLVIIWESSSHN 545 (556)
Q Consensus 519 ~~s~d----------g~~l~sgs~Dg~V~vwdl~~~~ 545 (556)
+|+|+ +.++++|+.||.|++||+++..
T Consensus 212 ~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~ 248 (287)
T d1pgua2 212 SWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPM 248 (287)
T ss_dssp EECCCC------CCSCCEEEEEETTSCEEEEESSCTT
T ss_pred eecccccccccccCCCCeeEeecCCCeEEEEECCCCC
Confidence 99874 4689999999999999997743
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.85 E-value=9.2e-20 Score=180.03 Aligned_cols=229 Identities=10% Similarity=0.071 Sum_probs=176.3
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCC-CCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPP-LGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~-h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
|+++++.|++|++||.++++.+..+... +...+.+++++|||+++ ++++.++.|.+||+.++ +.+..+.
T Consensus 3 ~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~---------~~~~~~~ 73 (337)
T d1pbyb_ 3 YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTG---------ETLGRID 73 (337)
T ss_dssp EEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTC---------CEEEEEE
T ss_pred EEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCC---------cEEEEEe
Confidence 7889999999999999999888777653 34568899999999987 56678999999999876 3334444
Q ss_pred CCC-----ccEEEEEEccCCCEEEEEc------------CCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 373 GHS-----ACVTDLYLCAGFSVAVSSS------------EDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 373 ~h~-----~~V~~l~~s~~~~~l~sgs------------~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
.+. ..+..++++|+++.+++++ .++.+.+||..+++....+.. ...+..++++|++++++
T Consensus 74 ~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~s~dg~~l~ 150 (337)
T d1pbyb_ 74 LSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA---PRQITMLAWARDGSKLY 150 (337)
T ss_dssp CCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC---CSSCCCEEECTTSSCEE
T ss_pred cCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccc---cCCceEEEEcCCCCEEE
Confidence 433 2345789999999888765 467899999999999988887 56788999999999999
Q ss_pred EEeecCcCCCCeEEEEEeC-CcEEEEe-----------------------------------------------------
Q psy10778 436 SVLQTTKTGGSILRLHTIN-AQLITSL----------------------------------------------------- 461 (556)
Q Consensus 436 s~s~~~~~~d~~I~iwdi~-g~~i~~~----------------------------------------------------- 461 (556)
+++. .+.+||.. ++....+
T Consensus 151 ~~~~-------~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (337)
T d1pbyb_ 151 GLGR-------DLHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLT 223 (337)
T ss_dssp EESS-------SEEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEE
T ss_pred EEcC-------CcceeeeecCcEEEEeecCCccccceecCCcceeeccccccceeeeeeeeeeeccceeeecccCccEEE
Confidence 8762 23344432 2111111
Q ss_pred --------------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEE
Q psy10778 462 --------------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 462 --------------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l 527 (556)
.+...+.+++++ +++ .+++++ ++.|++||+.+++.+..+. +...+.+++|+|||++|
T Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~--~~~i~v~d~~~~~~~~~~~--~~~~~~~~~~s~dG~~l 294 (337)
T d1pbyb_ 224 MDLETGEMAMREVRIMDVFYFSTAVN--PAK---TRAFGA--YNVLESFDLEKNASIKRVP--LPHSYYSVNVSTDGSTV 294 (337)
T ss_dssp EETTTCCEEEEEEEECSSCEEEEEEC--TTS---SEEEEE--ESEEEEEETTTTEEEEEEE--CSSCCCEEEECTTSCEE
T ss_pred EEcCCCcEEEEEecCCCcceEEEEec--ccc---eEEEEc--cccEEEEECCCCcEEEEEc--CCCCEEEEEECCCCCEE
Confidence 123344455555 565 555554 4889999999999999987 45778999999999999
Q ss_pred EEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 528 YASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
++++.||.|+|||..+.+.+..++
T Consensus 295 ~v~~~~~~i~v~D~~t~~~v~~i~ 318 (337)
T d1pbyb_ 295 WLGGALGDLAAYDAETLEKKGQVD 318 (337)
T ss_dssp EEESBSSEEEEEETTTCCEEEEEE
T ss_pred EEEeCCCcEEEEECCCCcEEEEEE
Confidence 999999999999999988776664
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.83 E-value=2.3e-19 Score=176.00 Aligned_cols=231 Identities=11% Similarity=0.005 Sum_probs=171.1
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG 373 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~ 373 (556)
.++++|+.||.|++|+.............+........+.+++..+++++.|+++++||+......... ......
T Consensus 70 ~~l~sg~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~-----~~~~~~ 144 (342)
T d1yfqa_ 70 LQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIA-----VKNLNS 144 (342)
T ss_dssp EEEEEEETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEE-----EEESCS
T ss_pred CEEEEcccccceeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceee-----eccccc
Confidence 389999999999999998877666665555556666677778899999999999999998765221111 112222
Q ss_pred C--CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEE---EEeCCCCCCCCeeEEEEeC-CCCeEEEEeecCcCCCCe
Q psy10778 374 H--SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYI---REIPCVDPNTPVSHVTMSE-TNGEIASVLQTTKTGGSI 447 (556)
Q Consensus 374 h--~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v---~~l~~~h~~~~V~~l~~sp-~~~~i~s~s~~~~~~d~~ 447 (556)
+ ........+.+.+..+++++.||.|++||+...+.. ..... . ...+.+.++.+ ++..+++++ .++.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~s-----~dg~ 217 (342)
T d1yfqa_ 145 NNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESG-L-KYQIRDVALLPKEQEGYACSS-----IDGR 217 (342)
T ss_dssp SSSSSCCCEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECS-C-SSCEEEEEECSGGGCEEEEEE-----TTSE
T ss_pred ccccceeeeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecc-c-ccceeeeEeecCCCCEEEeec-----CCCe
Confidence 2 233456677788889999999999999999865432 22222 3 45566666654 566777887 8999
Q ss_pred EEEEEeCCc----------EEEEe-------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC
Q psy10778 448 LRLHTINAQ----------LITSL-------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN 510 (556)
Q Consensus 448 I~iwdi~g~----------~i~~~-------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~ 510 (556)
+.+|+.+.. ..... .+...+++++|+ |++ ++|++|+.||.|++||+.+++.+..+..
T Consensus 218 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s--p~~---~~lasg~~Dg~v~vWD~~~~~~l~~~~~- 291 (342)
T d1yfqa_ 218 VAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS--PRH---KFLYTAGSDGIISCWNLQTRKKIKNFAK- 291 (342)
T ss_dssp EEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC--TTT---CCEEEEETTSCEEEEETTTTEEEEECCC-
T ss_pred EEEEEecCCcceeeccccceeeeeeeccCCCcccccceeEEec--CCc---cEEEEECCCCEEEEEECCCCcEEEEecC-
Confidence 999987521 11111 134578999999 888 8999999999999999999999998863
Q ss_pred CCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 511 VALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 511 h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
...+..++|+++++.+++++.|+.+++|....
T Consensus 292 -~~~~~~~~~s~~~~~l~~a~sdd~~~~~~~~~ 323 (342)
T d1yfqa_ 292 -FNEDSVVKIACSDNILCLATSDDTFKTNAAID 323 (342)
T ss_dssp -CSSSEEEEEEECSSEEEEEEECTHHHHCSSSC
T ss_pred -CCCCEEEEEEeCCCEEEEEEcCCcEEEeeeeC
Confidence 24566788899999999999999888887644
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.80 E-value=9.3e-19 Score=181.22 Aligned_cols=238 Identities=10% Similarity=0.031 Sum_probs=168.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++.+.||+|++||..+++.+..+.. | ..+..++|+|||+++++++.||+|++||+.++.... ...+....+|
T Consensus 34 ~~V~~~~dg~v~vwD~~t~~~~~~l~~-g-~~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~----~~~i~~~~~~ 107 (426)
T d1hzua2 34 FSVTLRDAGQIALVDGDSKKIVKVIDT-G-YAVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTK----VAEIKIGIEA 107 (426)
T ss_dssp EEEEETTTTEEEEEETTTCSEEEEEEC-C-SSEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEE----EEEEECCSEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeC-C-CCeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeE----EEEEeCCCCC
Confidence 567788999999999999998888873 3 469999999999999999999999999998762100 0112223467
Q ss_pred CccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCC-----------CeeEEEEeCCCCeEEEEeecCc
Q psy10778 375 SACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNT-----------PVSHVTMSETNGEIASVLQTTK 442 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~-----------~V~~l~~sp~~~~i~s~s~~~~ 442 (556)
.+.+.+++|+|||+++ +++..++++.+||..+++.+..+.. + .. ....++.++++..++....
T Consensus 108 ~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~--- 182 (426)
T d1hzua2 108 RSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVST-R-GMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK--- 182 (426)
T ss_dssp EEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEEC-C-EECSSSCCEESCCCEEEEEECSSSSEEEEEET---
T ss_pred cceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeec-c-CCCccceeecCCCceeEEEECCCCCEEEEecC---
Confidence 7778888899999976 4556899999999999988877665 4 33 3345556666665555442
Q ss_pred CCCCeEEEEEeC-C--cEEEEeecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCC------------------
Q psy10778 443 TGGSILRLHTIN-A--QLITSLASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYK------------------ 500 (556)
Q Consensus 443 ~~d~~I~iwdi~-g--~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~------------------ 500 (556)
..+.+.+++.. + ..+....+...+..+.++ |++ ++++++. .+..+.+++..+
T Consensus 183 -~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~g---~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 256 (426)
T d1hzua2 183 -ETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWD--SSH---RYFMTAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRG 256 (426)
T ss_dssp -TTTEEEEEECSSSSSCEEEEEECCSSEEEEEEC--TTS---CEEEEEETTCSEEEEEETTTTEEEEEEECSSCCCCSCC
T ss_pred -CCCeEEEEEeccccceeeEEeccCCccEeeeEC--CCC---cEEEeeeecccceeeeecccccEEEEeccCCcccccce
Confidence 34555555543 2 234444566777888888 666 4444433 333444444322
Q ss_pred ------------------------------------CeEEEEecCCCCCCeEEEEEecCCCEEEE-------EcCCCcEE
Q psy10778 501 ------------------------------------LAHLLTLNTNVALPVIAVTYSCDSQHLYA-------SNTEGLVI 537 (556)
Q Consensus 501 ------------------------------------~~~~~~~~~~h~~~V~~l~~s~dg~~l~s-------gs~Dg~V~ 537 (556)
++....+. +|...+..++|+||+++|++ ++.|++|+
T Consensus 257 ~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~-g~~~~v~~v~~sPdg~~l~v~~~~~~s~~~~~tv~ 335 (426)
T d1hzua2 257 ANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQ-GQGGGSLFIKTHPKSSHLYVDTTFNPDARISQSVA 335 (426)
T ss_dssp EEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEE-CSSSCCCCEECCTTCSEEEECCTTCSSHHHHTCEE
T ss_pred eeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEe-cCCCceeEEEcCCCCceEEEeecCCCCcccCCEEE
Confidence 24555555 67788999999999999994 55688999
Q ss_pred EEEcCCCCCcCee
Q psy10778 538 IWESSSHNRTPKF 550 (556)
Q Consensus 538 vwdl~~~~~~~~~ 550 (556)
|||+.+++...++
T Consensus 336 vwd~~t~~~~~~~ 348 (426)
T d1hzua2 336 VFDLKNLDAKYQV 348 (426)
T ss_dssp EEETTCTTSCCEE
T ss_pred EEECCCCCcCeEE
Confidence 9999998766554
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.78 E-value=1.5e-18 Score=172.94 Aligned_cols=188 Identities=12% Similarity=0.005 Sum_probs=153.8
Q ss_pred EEEEcC-CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC--CcEEEEeCC
Q psy10778 329 TATTAP-DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED--GTCLLWDIN 405 (556)
Q Consensus 329 ~i~~s~-dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D--g~I~iwdl~ 405 (556)
.-.||| ||+++|+++. |.|++|+...+ .. .. .+|...|.+++|+|||+.|++++.+ ..|++||+.
T Consensus 7 ~~~fSP~dG~~~a~~~~-g~v~v~d~~~~---------~~-~~-~~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~ 74 (360)
T d1k32a3 7 AEDFSPLDGDLIAFVSR-GQAFIQDVSGT---------YV-LK-VPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYR 74 (360)
T ss_dssp EEEEEECGGGCEEEEET-TEEEEECTTSS---------BE-EE-CSCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETT
T ss_pred cccccCCCCCEEEEEEC-CeEEEEECCCC---------cE-EE-ccCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECC
Confidence 356999 9999999874 89999998754 11 22 3799999999999999988876654 379999999
Q ss_pred CCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee-cCCCeEEEEEeeCCCCCcceE
Q psy10778 406 TIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA-SELRITSVTFSNAPEGVSQNV 483 (556)
Q Consensus 406 ~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~-~~~~i~~i~~s~~pdg~~~~~ 483 (556)
+++.. .+.. | ...+.+++|+|++++|++++ .++.+++|++. ++...... +...+.+++|+ |+| ++
T Consensus 75 ~~~~~-~~~~-~-~~~v~~~~~spdg~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s--pdg---~~ 141 (360)
T d1k32a3 75 TGKAE-KFEE-N-LGNVFAMGVDRNGKFAVVAN-----DRFEIMTVDLETGKPTVIERSREAMITDFTIS--DNS---RF 141 (360)
T ss_dssp TCCEE-ECCC-C-CCSEEEEEECTTSSEEEEEE-----TTSEEEEEETTTCCEEEEEECSSSCCCCEEEC--TTS---CE
T ss_pred CCcEE-EeeC-C-CceEEeeeecccccccceec-----cccccccccccccceeeeeecccccccchhhc--cce---ee
Confidence 87654 5556 6 89999999999999999999 89999999997 56555554 56788999999 999 78
Q ss_pred EEEEe----------CCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 484 IVTGH----------SDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 484 l~tg~----------~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
|+.+. .++.+++||+.+++...... +...+..++|+|||+.|++++.++.+.+|+...
T Consensus 142 la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~--~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~ 209 (360)
T d1k32a3 142 IAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATT--ENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVV 209 (360)
T ss_dssp EEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSC--SSSBEEEEEECTTSCEEEEEESCCCCCEECSSS
T ss_pred eeeeccccccceeeccccceeeeccccCceeeecc--cccccccccccCCCCEEEEEeCCCceEcccccc
Confidence 87543 34579999998877655544 667889999999999999999999999999765
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.76 E-value=1.6e-17 Score=164.27 Aligned_cols=240 Identities=9% Similarity=-0.042 Sum_probs=162.4
Q ss_pred ceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 294 GMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 294 ~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.|+++++.|++|.+||+++++.+..+...|...+.+++|+|||+++ ++++.++.|++||+.++. .+..+.
T Consensus 9 ~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~---------~~~~~~ 79 (346)
T d1jmxb_ 9 EYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCK---------NTFHAN 79 (346)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTE---------EEEEEE
T ss_pred cEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCe---------eeeeec
Confidence 3899999999999999999988888876777788999999999987 455678999999988652 222222
Q ss_pred C------CCccEEEEEEccCCCEEEEEc------------CCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCe
Q psy10778 373 G------HSACVTDLYLCAGFSVAVSSS------------EDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGE 433 (556)
Q Consensus 373 ~------h~~~V~~l~~s~~~~~l~sgs------------~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~ 433 (556)
. +...+..++++|+|+.+++++ .++.+.+||..+++....+... . ...+..+.+++++..
T Consensus 80 ~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 158 (346)
T d1jmxb_ 80 LSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPM-PRQVYLMRAADDGSL 158 (346)
T ss_dssp SCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEEC-CSSCCCEEECTTSCE
T ss_pred ccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccceeeeEEEeeec-cCceEEEEecCCCEE
Confidence 1 122355789999999887654 4677888988765433221110 0 223334444444333
Q ss_pred EEEEeecC-----------------------------------------------------------cCCCCeEEEEEeC
Q psy10778 434 IASVLQTT-----------------------------------------------------------KTGGSILRLHTIN 454 (556)
Q Consensus 434 i~s~s~~~-----------------------------------------------------------~~~d~~I~iwdi~ 454 (556)
++++.... ...+..+.+|+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (346)
T d1jmxb_ 159 YVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLK 238 (346)
T ss_dssp EEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETT
T ss_pred EEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCceEeeeeeeeeccCceeEeeccCCceEEEEECC
Confidence 32211000 0011234444443
Q ss_pred -CcEEEEe--ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEc
Q psy10778 455 -AQLITSL--ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASN 531 (556)
Q Consensus 455 -g~~i~~~--~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs 531 (556)
+...... .+...+.++.++ +++ ..++.+. ++.|++||..+++.+..+. +...+.+++|+|||++|++++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~-~~~v~v~d~~~~~~~~~~~--~~~~~~~va~s~DG~~l~v~~ 310 (346)
T d1jmxb_ 239 TGKTHTQEFADLTELYFTGLRS--PKD---PNQIYGV-LNRLAKYDLKQRKLIKAAN--LDHTYYCVAFDKKGDKLYLGG 310 (346)
T ss_dssp TCCEEEEEEEECSSCEEEEEEC--SSC---TTEEEEE-ESEEEEEETTTTEEEEEEE--CSSCCCEEEECSSSSCEEEES
T ss_pred CCceEEEEeecccceeEEEEEe--CCC---CEEEEec-CCeEEEEECCCCcEEEEEc--CCCCEEEEEEcCCCCEEEEEe
Confidence 2222221 345566777777 665 4455544 4689999999999999887 345799999999999999999
Q ss_pred CCCcEEEEEcCCCCCcCeee
Q psy10778 532 TEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 532 ~Dg~V~vwdl~~~~~~~~~~ 551 (556)
.||.|++||+.+.+.+.+++
T Consensus 311 ~d~~v~v~D~~t~~~i~~i~ 330 (346)
T d1jmxb_ 311 TFNDLAVFNPDTLEKVKNIK 330 (346)
T ss_dssp BSSEEEEEETTTTEEEEEEE
T ss_pred CCCcEEEEECccCCEEEEEE
Confidence 99999999999988776654
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.72 E-value=4.9e-16 Score=161.04 Aligned_cols=233 Identities=9% Similarity=-0.019 Sum_probs=168.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++++.+.||+|.|||..+++.+..+..+ ..+..++|+|||+++++++.||+|++||+.+..... ...+....+|
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g--~~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~----~~~i~~~~~~ 107 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTG--YAVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTT----VAEIKIGSEA 107 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECS--SCEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCE----EEEEECCSEE
T ss_pred EEEEEcCCCEEEEEECCCCcEEEEEeCC--CCeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceE----EEEEecCCCC
Confidence 5688899999999999999999988743 369999999999999999999999999987652100 0112223456
Q ss_pred CccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCC----------CCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 375 SACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVD----------PNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h----------~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
.+.+.+..|+|||++| ++++.++++++||..+++.+..+.. + .......+.+++++..++....
T Consensus 108 ~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~---- 182 (432)
T d1qksa2 108 RSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQST-RGMTYDEQEYHPEPRVAAILASHYRPEFIVNVK---- 182 (432)
T ss_dssp EEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEEC-CEECTTTCCEESCCCEEEEEECSSSSEEEEEET----
T ss_pred CCeEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeecc-CCccccceeccCCCceeEEEECCCCCEEEEEEc----
Confidence 6777777888999965 7888999999999999998877654 2 0345667889999988765543
Q ss_pred CCCeEEEEEeC-Cc--EEEEeecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEEEEeCCCCeEEEEecCC----CCCCe
Q psy10778 444 GGSILRLHTIN-AQ--LITSLASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQLWSGYKLAHLLTLNTN----VALPV 515 (556)
Q Consensus 444 ~d~~I~iwdi~-g~--~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~~~~~~----h~~~V 515 (556)
.++.|.+||.. ++ .+..+.....+..++|+ |+| +++++++ .++.+.++|..+++.+..+..+ |....
T Consensus 183 ~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~s--pdg---~~~~va~~~~~~v~v~d~~~~~~~~~~~~g~~~~~~~~~ 257 (432)
T d1qksa2 183 ETGKILLVDYTDLNNLKTTEISAERFLHDGGLD--GSH---RYFITAANARNKLVVIDTKEGKLVAIEDTGGQTPHPGRG 257 (432)
T ss_dssp TTTEEEEEETTCSSEEEEEEEECCSSEEEEEEC--TTS---CEEEEEEGGGTEEEEEETTTTEEEEEEECSSSSBCCTTC
T ss_pred cCCeEEEEEccCCCcceEEEEcccCccccceEC--CCC---CEEEEeccccceEEEeecccceEEEEeccCccccccCcc
Confidence 67899999986 44 34455677889999999 999 6666555 5668999999888877766531 22333
Q ss_pred EEEEEecCCCEEEEEc-CCCcEEEEEcCC
Q psy10778 516 IAVTYSCDSQHLYASN-TEGLVIIWESSS 543 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs-~Dg~V~vwdl~~ 543 (556)
....+...+...++.. .++.|.+|+...
T Consensus 258 ~~~~~~~~g~~~~~~~lg~~~v~~~~~~~ 286 (432)
T d1qksa2 258 ANFVHPTFGPVWATSHMGDDSVALIGTDP 286 (432)
T ss_dssp EEEEETTTEEEEEEEBSSSSEEEEEECCT
T ss_pred cceecCCCCceecccccCCceEEeccccc
Confidence 3444443333333332 256666666544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.67 E-value=3.7e-16 Score=161.32 Aligned_cols=239 Identities=10% Similarity=0.076 Sum_probs=160.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC----CCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP----PLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~----~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
++++++.|++|++||+.+++....... +|.+.+.+++|+|||++++++ ..++++++||...+ .+..
T Consensus 75 ~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~---------~~~~ 145 (426)
T d1hzua2 75 YLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETL---------EPKQ 145 (426)
T ss_dssp EEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTC---------CEEE
T ss_pred EEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCcc---------ceeE
Confidence 677788999999999998876544322 355556677788999987555 58899999998765 2333
Q ss_pred EeeCC-----------CccEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeE--EEEeCCCCCCCCeeEEEEeCCCCeEE
Q psy10778 370 ILLGH-----------SACVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGY--IREIPCVDPNTPVSHVTMSETNGEIA 435 (556)
Q Consensus 370 ~l~~h-----------~~~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~--v~~l~~~h~~~~V~~l~~sp~~~~i~ 435 (556)
.+.+| ......+..++++..++... ..+.+.+++...+.. +..+. + ...+..++++|++++++
T Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~g~~~~ 222 (426)
T d1hzua2 146 IVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIG--A-APFLADGGWDSSHRYFM 222 (426)
T ss_dssp EEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECSSSSSCEEEEEE--C-CSSEEEEEECTTSCEEE
T ss_pred EeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCCCeEEEEEeccccceeeEEec--c-CCccEeeeECCCCcEEE
Confidence 33333 34455566666666544433 345566666555432 23333 3 67788999999999888
Q ss_pred EEeecC-------------------------------------------cCCCCeEEEEEeC--------CcEEEEee-c
Q psy10778 436 SVLQTT-------------------------------------------KTGGSILRLHTIN--------AQLITSLA-S 463 (556)
Q Consensus 436 s~s~~~-------------------------------------------~~~d~~I~iwdi~--------g~~i~~~~-~ 463 (556)
++.... ...++.+.+|+.. ++....+. |
T Consensus 223 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~~~~~~~~~~~~~~~~~~~~l~g~ 302 (426)
T d1hzua2 223 TAANNSNKVAVIDSKDRRLSALVDVGKTPHPGRGANFVHPKYGPVWSTSHLGDGSISLIGTDPKNHPQYAWKKVAELQGQ 302 (426)
T ss_dssp EEETTCSEEEEEETTTTEEEEEEECSSCCCCSCCEEEEETTTEEEEEEECTTTCEEEEEECCTTTCTTTBTSEEEEEECS
T ss_pred eeeecccceeeeecccccEEEEeccCCcccccceeeeecCCCCceEEeccCCCceEEEeeccccccccccceEeEEEecC
Confidence 776422 0023344444331 13333443 3
Q ss_pred CCCeEEEEEeeCCCCCcceEEEE-------EeCCCeEEEEeCCCCeEEEEecC--------CCCCCeEEEEEecCCCEEE
Q psy10778 464 ELRITSVTFSNAPEGVSQNVIVT-------GHSDGTIQLWSGYKLAHLLTLNT--------NVALPVIAVTYSCDSQHLY 528 (556)
Q Consensus 464 ~~~i~~i~~s~~pdg~~~~~l~t-------g~~dg~I~iwd~~~~~~~~~~~~--------~h~~~V~~l~~s~dg~~l~ 528 (556)
...+..++|+ |++ +.|++ +..+++|++||+.+++...++.. .+...|.+++|||||++++
T Consensus 303 ~~~v~~v~~s--Pdg---~~l~v~~~~~~s~~~~~tv~vwd~~t~~~~~~~~~~~~~~~~~~~~~rv~~~~fSpDGk~i~ 377 (426)
T d1hzua2 303 GGGSLFIKTH--PKS---SHLYVDTTFNPDARISQSVAVFDLKNLDAKYQVLPIAEWADLGEGAKRVVQPEYNKRGDEVW 377 (426)
T ss_dssp SSCCCCEECC--TTC---SEEEECCTTCSSHHHHTCEEEEETTCTTSCCEEECHHHHHCCCSSCCCEEEEEECSSSSEEE
T ss_pred CCceeEEEcC--CCC---ceEEEeecCCCCcccCCEEEEEECCCCCcCeEEeccchhcccCCCCccEEEEEECCCCCEEE
Confidence 5568889999 999 78884 45678999999999876655421 3566799999999999775
Q ss_pred EE-----cCCCcEEEEEcCCCCCcCee
Q psy10778 529 AS-----NTEGLVIIWESSSHNRTPKF 550 (556)
Q Consensus 529 sg-----s~Dg~V~vwdl~~~~~~~~~ 550 (556)
.+ +.+|.|+|||.++.+....+
T Consensus 378 vs~~~~~~~~~~i~v~D~~T~k~~~~i 404 (426)
T d1hzua2 378 FSVWNGKNDSSALVVVDDKTLKLKAVV 404 (426)
T ss_dssp EEECCCTTSCCEEEEEETTTTEEEEEE
T ss_pred EEEecCCCCCCeEEEEECCCCeEEEEE
Confidence 43 46789999999997755443
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.66 E-value=7e-15 Score=144.55 Aligned_cols=233 Identities=11% Similarity=0.082 Sum_probs=152.2
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceE-cCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVI-RPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~-~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
.++.++.|++|++|++........+ ...|.+.+..++|+|||++|++++ .|+.|++|++........ .....
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~------~~~~~ 79 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALT------FAAES 79 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSCEEEEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEE------EEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCCeEEEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEE------Eeeec
Confidence 5677889999999998754433222 235788999999999999996655 589999999976521100 11122
Q ss_pred CCCccEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeEEEE--eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSE-DGTCLLWDINTIGYIRE--IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILR 449 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~-Dg~I~iwdl~~~~~v~~--l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~ 449 (556)
.+...+..++|+|+|++|++++. ++.+.+|+......... ... + ...+.++.++|+++.+++++. .+..+.
T Consensus 80 ~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~-~-~~~~~~v~~s~d~~~~~~~~~----~~~~i~ 153 (333)
T d1ri6a_ 80 ALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVE-G-LDGCHSANISPDNRTLWVPAL----KQDRIC 153 (333)
T ss_dssp ECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEEC-C-CTTBCCCEECTTSSEEEEEEG----GGTEEE
T ss_pred ccCCCceEEEEcCCCCEEeecccCCCceeeeccccccceecccccC-C-CccceEEEeeecceeeecccc----ccceee
Confidence 34455778999999998888774 77899998876654332 223 3 567888999999998887764 345566
Q ss_pred EEEeC--CcEEE----------------------------------------------------Eee-------cCCCeE
Q psy10778 450 LHTIN--AQLIT----------------------------------------------------SLA-------SELRIT 468 (556)
Q Consensus 450 iwdi~--g~~i~----------------------------------------------------~~~-------~~~~i~ 468 (556)
+|+.. +.... ... ......
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (333)
T d1ri6a_ 154 LFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDPHGNIECVQTLDMMPENFSDTRWAA 233 (333)
T ss_dssp EEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCTTSCCEEEEEEECSCTTCCSCCCEE
T ss_pred EEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeecccccceeeeeeeeeeecCCCccccce
Confidence 66653 11000 000 011233
Q ss_pred EEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcCC
Q psy10778 469 SVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYASN-TEGLVIIWESSS 543 (556)
Q Consensus 469 ~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~~ 543 (556)
.++++ +++. .+++++..++.+.+|++........+.. .....+++++|+|||++|++++ .++.|.+|++..
T Consensus 234 ~~~~s--~d~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~a~spDGk~l~va~~~~~~v~v~~id~ 307 (333)
T d1ri6a_ 234 DIHIT--PDGR--HLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGKYLIAAGQKSHHISVYEIVG 307 (333)
T ss_dssp EEEEC--TTSS--EEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSSEEEEECTTTCEEEEEEEET
T ss_pred eEEEe--cccC--ceeeecccCCeEEEEEEcCCCCEEEEEEEeCCCCCeeEEEEeCCCCEEEEEECCCCeEEEEEEEC
Confidence 45566 6662 3455566778899998764432222111 2346678999999999887765 468899996643
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.65 E-value=2.1e-15 Score=156.19 Aligned_cols=193 Identities=12% Similarity=-0.021 Sum_probs=144.5
Q ss_pred EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe--EEEEeCC
Q psy10778 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIG--YIREIPC 415 (556)
Q Consensus 338 ~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~--~v~~l~~ 415 (556)
++++.+.||+|.|||..++ +.+..+..|. .+..++|||||+++++++.||++.+||+.+++ .+..+..
T Consensus 34 ~~v~~~d~g~v~v~D~~t~---------~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~ 103 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTY---------EIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKI 103 (432)
T ss_dssp EEEEETTTTEEEEEETTTC---------CEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEEC
T ss_pred EEEEEcCCCEEEEEECCCC---------cEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEec
Confidence 4588899999999999887 6667887774 69999999999999999999999999998875 3444443
Q ss_pred C--CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEee------------cCCCeEEEEEeeCCCCCc
Q psy10778 416 V--DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLA------------SELRITSVTFSNAPEGVS 480 (556)
Q Consensus 416 ~--h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~------------~~~~i~~i~~s~~pdg~~ 480 (556)
. | .+.+.+.+|+|||+++++.+. .++.|++||.. ++++.... .......+.++ ++|.
T Consensus 104 ~~~~-~~~~~s~~~SpDG~~l~vs~~----~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s--~dg~- 175 (432)
T d1qksa2 104 GSEA-RSIETSKMEGWEDKYAIAGAY----WPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILAS--HYRP- 175 (432)
T ss_dssp CSEE-EEEEECCSTTCTTTEEEEEEE----ETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEEC--SSSS-
T ss_pred CCCC-CCeEEecccCCCCCEEEEEcC----CCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEEC--CCCC-
Confidence 0 2 233444556789998754432 78999999997 77666543 24566778888 7773
Q ss_pred ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC-CCcEEEEEcCCCCCcCe
Q psy10778 481 QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT-EGLVIIWESSSHNRTPK 549 (556)
Q Consensus 481 ~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~-Dg~V~vwdl~~~~~~~~ 549 (556)
.++++...++.|.+||..+++........+...+..++|+|||+++++++. ++.+.+++..+.+....
T Consensus 176 -~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~ 244 (432)
T d1qksa2 176 -EFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVIDTKEGKLVAI 244 (432)
T ss_dssp -EEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred -EEEEEEccCCeEEEEEccCCCcceEEEEcccCccccceECCCCCEEEEeccccceEEEeecccceEEEE
Confidence 455677788999999998877544332235677899999999998777665 55788899887655443
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.60 E-value=1.5e-13 Score=132.51 Aligned_cols=186 Identities=15% Similarity=0.171 Sum_probs=150.1
Q ss_pred EEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCC
Q psy10778 339 LWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVD 417 (556)
Q Consensus 339 l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h 417 (556)
.++++.|++|.+||+.++ +.++.+... ..+..++|+|+|++| ++++.++.|.+||+.+++.++++.. +
T Consensus 5 yV~~~~~~~v~v~D~~t~---------~~~~~i~~g-~~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~-~ 73 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSN---------KVTATIPVG-SNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPA-G 73 (301)
T ss_dssp EEEETTTTEEEEEETTTT---------EEEEEEECS-SSEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEEC-S
T ss_pred EEEECCCCEEEEEECCCC---------eEEEEEECC-CCceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeec-c
Confidence 356678999999999876 344555533 457899999999976 6778899999999999999999987 4
Q ss_pred CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEE
Q psy10778 418 PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLW 496 (556)
Q Consensus 418 ~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iw 496 (556)
..+..+++++++..+++.+. .++.+.+|+.. ++....+.......+++++ +++. .+++++..++.+.+|
T Consensus 74 --~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~dg~--~~~~~~~~~~~~~~~ 143 (301)
T d1l0qa2 74 --SSPQGVAVSPDGKQVYVTNM----ASSTLSVIDTTSNTVAGTVKTGKSPLGLALS--PDGK--KLYVTNNGDKTVSVI 143 (301)
T ss_dssp --SSEEEEEECTTSSEEEEEET----TTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TTSS--EEEEEETTTTEEEEE
T ss_pred --cccccccccccccccccccc----ccceeeecccccceeeeeccccccceEEEee--cCCC--eeeeeeccccceeee
Confidence 56899999999998776653 67899999997 7778888888889999999 8883 445667778999999
Q ss_pred eCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCC-CcEEEEEcCCCCCc
Q psy10778 497 SGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTE-GLVIIWESSSHNRT 547 (556)
Q Consensus 497 d~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~D-g~V~vwdl~~~~~~ 547 (556)
+..+.+.+..+. +...+..++++++++.+++++.+ +.+.+|+....+..
T Consensus 144 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (301)
T d1l0qa2 144 NTVTKAVINTVS--VGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVI 193 (301)
T ss_dssp ETTTTEEEEEEE--CCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEE
T ss_pred eccccceeeecc--cCCCceEEEeeccccceeeecccccccccccccceeee
Confidence 999999999887 35678999999999988877765 56677777665443
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.59 E-value=1.7e-14 Score=143.49 Aligned_cols=232 Identities=9% Similarity=-0.030 Sum_probs=156.5
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE----------eCCCcEEEEEeeeccCcccccccCCCe
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG----------LTSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg----------s~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
..++.|.+||..+++.+..+.. + .+..++|+|||++|+++ ..|+.|++||..++ +.+.
T Consensus 25 ~~~~~v~v~D~~tg~~~~~~~~-g--~~~~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~~t~---------~~~~ 92 (355)
T d2bbkh_ 25 AAVTQQFVIDGEAGRVIGMIDG-G--FLPNPVVADDGSFIAHASTVFSRIARGERTDYVEVFDPVTL---------LPTA 92 (355)
T ss_dssp CSSEEEEEEETTTTEEEEEEEE-C--SSCEEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC---------CEEE
T ss_pred CCcCeEEEEECCCCcEEEEEEC-C--CCCceEEcCCCCEEEEEeCCCccccccCCCCEEEEEECCCC---------CEEE
Confidence 4577899999999987777653 2 33478999999988764 34789999998876 2223
Q ss_pred EeeCCC-------ccEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeEEEEeCCCCCC-------CCeeEEEEeCCCCe
Q psy10778 370 ILLGHS-------ACVTDLYLCAGFSVAVSSS--EDGTCLLWDINTIGYIREIPCVDPN-------TPVSHVTMSETNGE 433 (556)
Q Consensus 370 ~l~~h~-------~~V~~l~~s~~~~~l~sgs--~Dg~I~iwdl~~~~~v~~l~~~h~~-------~~V~~l~~sp~~~~ 433 (556)
.+..+. .....++|+++++.++.++ .+..+.+|+..+++.+..+.. + . .....+++++++..
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~dg~~ 170 (355)
T d2bbkh_ 93 DIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDV-P-DCYHIFPTAPDTFFMHCRDGSL 170 (355)
T ss_dssp EEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEEC-C-SEEEEEEEETTEEEEEETTSCE
T ss_pred EEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEec-C-CcceEeecCCcceEEEcCCCCE
Confidence 332221 2234678999999777654 567899999999887766554 2 1 11223445555444
Q ss_pred EEEEeecC---------------------------------cCCCCeEEEEEeCCcEEEEe---ec-----------CCC
Q psy10778 434 IASVLQTT---------------------------------KTGGSILRLHTINAQLITSL---AS-----------ELR 466 (556)
Q Consensus 434 i~s~s~~~---------------------------------~~~d~~I~iwdi~g~~i~~~---~~-----------~~~ 466 (556)
++...... .+.++.+++|++.+..+..+ .. ...
T Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~ 250 (355)
T d2bbkh_ 171 AKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGG 250 (355)
T ss_dssp EEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECS
T ss_pred EEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccc
Confidence 43322111 01678889998873221111 10 123
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCC----------CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC--EEEEEcCCC
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSD----------GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ--HLYASNTEG 534 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~d----------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~--~l~sgs~Dg 534 (556)
...++++ +++ ..++....+ ..|.+||..+++.+..+. +...+.+++|+|||+ ++++++.|+
T Consensus 251 ~~~~~~~--~d~---~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~v~~~~d~ 323 (355)
T d2bbkh_ 251 WQQVAYH--RAL---DRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFE--MGHEIDSINVSQDEKPLLYALSTGDK 323 (355)
T ss_dssp SSCEEEE--TTT---TEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEE--EEEEECEEEECCSSSCEEEEEETTTT
T ss_pred eEEEEEe--CCC---CeEEEEeccCCceeecCCCCeEEEEeCCCCcEEEEec--CCCCEEEEEEcCCCCeEEEEEECCCC
Confidence 3457788 777 555554432 369999999999998887 346689999999997 456778899
Q ss_pred cEEEEEcCCCCCcCeeec
Q psy10778 535 LVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 535 ~V~vwdl~~~~~~~~~~~ 552 (556)
.|+|||+++++.+.++..
T Consensus 324 ~i~v~D~~tg~~~~~i~~ 341 (355)
T d2bbkh_ 324 TLYIHDAESGEELRSVNQ 341 (355)
T ss_dssp EEEEEETTTCCEEEEECC
T ss_pred EEEEEECCCCCEEEEEeC
Confidence 999999999988776653
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.55 E-value=1.4e-12 Score=130.33 Aligned_cols=229 Identities=8% Similarity=-0.067 Sum_probs=139.9
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccCCCe
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+.++.|.+||.++++.+..+. .+. ...++|+|||++|++++ .++.|.+||..++.. +.
T Consensus 44 ~~~~~v~v~D~~tg~~~~~~~-~~~--~~~~a~SpDG~~l~va~~~~~~~~~~~~~~~v~v~D~~t~~~---------~~ 111 (373)
T d2madh_ 44 SAIIQQWVLDAGSGSILGHVN-GGF--LPNPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLP---------IA 111 (373)
T ss_pred CCCceEEEEECCCCCEEEEEe-CCC--CccEEEcCCCCEEEEEeecCCcccccccceEEEEEECCCCcE---------EE
Confidence 345779999999998887765 333 23789999999999875 457899999987631 11
Q ss_pred EeeC-----------------------------------------------CCccEEEEEEccCCCEE-EEEcCCCcEEE
Q psy10778 370 ILLG-----------------------------------------------HSACVTDLYLCAGFSVA-VSSSEDGTCLL 401 (556)
Q Consensus 370 ~l~~-----------------------------------------------h~~~V~~l~~s~~~~~l-~sgs~Dg~I~i 401 (556)
.+.. +.....++.++++++.+ ++.+.||++.+
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~v~~~~dg~~~~ 191 (373)
T d2madh_ 112 DIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAK 191 (373)
T ss_pred EEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEEeccceeEEEecCCCcEEEEEcCCCeEEE
Confidence 1111 12223445555555533 45555666666
Q ss_pred EeCCCCeEEEEeCCCCCCCC------eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEE---Eee----------
Q psy10778 402 WDINTIGYIREIPCVDPNTP------VSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLIT---SLA---------- 462 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~------V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~---~~~---------- 462 (556)
||...++....... + ... ...+.+++++..+ ..+ .++.+.+|+..+..+. ...
T Consensus 192 ~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~ 263 (373)
T d2madh_ 192 TDHAGGAAGAGLVG-A-MLTAAQNLLTQPAQANKSGRIV-WPV-----YSGKILQADISAAGATNKAPIDALSGGRKADT 263 (373)
T ss_pred EEcCCceeeEEEee-e-ccccCccceeeeEEECCCceEE-Eec-----CCceEEEEEcCCCeEEEEEeeccccCcEEeee
Confidence 66665555555444 2 111 1222333333222 222 4556666665422111 100
Q ss_pred -cCCCeEEEEEeeCCCCCc-------ceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE--EEEEcC
Q psy10778 463 -SELRITSVTFSNAPEGVS-------QNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH--LYASNT 532 (556)
Q Consensus 463 -~~~~i~~i~~s~~pdg~~-------~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~--l~sgs~ 532 (556)
.......++++ +++.. ...+++...++.+.+||..+++.+..+. +...+.+++|+|||+. +++++.
T Consensus 264 ~~~~~~~~~~~~--~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~--~~~~~~~~a~spDG~~~l~vt~~~ 339 (373)
T d2madh_ 264 WRPGGWQQVAYL--KSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQIS--LGHDVDAISVAQDGGPDLYALSAG 339 (373)
T ss_pred eccCcceeeEEe--cCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEec--CCCCeeEEEECCCCCEEEEEEeCC
Confidence 01122233444 33310 0334556667889999999999999887 5678999999999984 467899
Q ss_pred CCcEEEEEcCCCCCcCeeec
Q psy10778 533 EGLVIIWESSSHNRTPKFLN 552 (556)
Q Consensus 533 Dg~V~vwdl~~~~~~~~~~~ 552 (556)
|+.|++||+.+++.+..+..
T Consensus 340 d~~v~v~D~~tg~~~~~~~~ 359 (373)
T d2madh_ 340 TEVLHIYDAGAGDQDQSTVE 359 (373)
T ss_pred CCeEEEEECCCCCEEEEECC
Confidence 99999999999988777653
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=8.7e-13 Score=128.96 Aligned_cols=190 Identities=12% Similarity=0.034 Sum_probs=139.9
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCC----CCceEEEEEcCCCCEEEEEeCC------------CcEEEEEeeeccC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPL----GATIATATTAPDCHTLWLGLTS------------GNILVYEYELNAS 358 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h----~~~V~~i~~s~dg~~l~tgs~D------------g~I~vwd~~~~~~ 358 (556)
++++++.++.|++||..+++.+..+.... ...+..++++|++++++++..+ +.+.+||...+
T Consensus 48 l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~-- 125 (337)
T d1pbyb_ 48 AYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETL-- 125 (337)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECCBTTEEEECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTT--
T ss_pred EEEEECCCCeEEEEECCCCcEEEEEecCCCcccccceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCC--
Confidence 56788899999999999988777665321 2234578999999999888753 55666666554
Q ss_pred cccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC----------------------
Q psy10778 359 TNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV---------------------- 416 (556)
Q Consensus 359 ~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~---------------------- 416 (556)
+....+. +...+.+++++++|+++++++.+ +.+||..+++....+...
T Consensus 126 -------~~~~~~~-~~~~~~~~~~s~dg~~l~~~~~~--~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (337)
T d1pbyb_ 126 -------SRRKAFE-APRQITMLAWARDGSKLYGLGRD--LHVMDPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESS 195 (337)
T ss_dssp -------EEEEEEE-CCSSCCCEEECTTSSCEEEESSS--EEEEETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTT
T ss_pred -------eEEEecc-ccCCceEEEEcCCCCEEEEEcCC--cceeeeecCcEEEEeecCCccccceecCCcceeecccccc
Confidence 2233444 44567889999999999988754 677888776655443220
Q ss_pred -------------------------------------------CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEe
Q psy10778 417 -------------------------------------------DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTI 453 (556)
Q Consensus 417 -------------------------------------------h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi 453 (556)
+ ...+..+++++++..++.+ ++.+++||+
T Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-------~~~i~v~d~ 267 (337)
T d1pbyb_ 196 GVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM-DVFYFSTAVNPAKTRAFGA-------YNVLESFDL 267 (337)
T ss_dssp TEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC-SSCEEEEEECTTSSEEEEE-------ESEEEEEET
T ss_pred ceeeeeeeeeeeccceeeecccCccEEEEEcCCCcEEEEEecCC-CcceEEEEecccceEEEEc-------cccEEEEEC
Confidence 1 1223334445555554433 478999999
Q ss_pred C-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 454 N-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 454 ~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
. ++.+..+.+...+.+++|+ |+| ++|++++.+|.|++||..+++.+.++..
T Consensus 268 ~~~~~~~~~~~~~~~~~~~~s--~dG---~~l~v~~~~~~i~v~D~~t~~~v~~i~~ 319 (337)
T d1pbyb_ 268 EKNASIKRVPLPHSYYSVNVS--TDG---STVWLGGALGDLAAYDAETLEKKGQVDL 319 (337)
T ss_dssp TTTEEEEEEECSSCCCEEEEC--TTS---CEEEEESBSSEEEEEETTTCCEEEEEEC
T ss_pred CCCcEEEEEcCCCCEEEEEEC--CCC---CEEEEEeCCCcEEEEECCCCcEEEEEEC
Confidence 8 8888888888899999999 999 8999999999999999999999988864
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.39 E-value=2.6e-12 Score=128.96 Aligned_cols=232 Identities=11% Similarity=-0.086 Sum_probs=149.1
Q ss_pred ccCCC--eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe----------CCCcEEEEEeeeccCcccccccC
Q psy10778 299 NECDN--LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL----------TSGNILVYEYELNASTNKIEFCK 366 (556)
Q Consensus 299 gs~Dg--~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs----------~Dg~I~vwd~~~~~~~~~~~~~~ 366 (556)
...+| .+.++|..+++.+..+.. +... .++|+|||+.|++++ .|+.|++||..+. +
T Consensus 40 ~~~~g~~~~~~~d~~~~~~~~~~~~-~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~---------~ 107 (368)
T d1mdah_ 40 AYFAGTTENWVSCAGCGVTLGHSLG-AFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTF---------L 107 (368)
T ss_dssp TTTCSSEEEEEEETTTTEEEEEEEE-CTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTC---------C
T ss_pred ccCCCcceEEEEeCCCCcEEEEEeC-CCCC--cceECCCCCEEEEEcccCccccccccCCeEEEEECCCC---------c
Confidence 44444 466678888887777663 3333 588999999998864 4778999998765 3
Q ss_pred CCeEeeCCCc-------cEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCeEEEEeCCCCCCC-------CeeEEEEeCCC
Q psy10778 367 PPTILLGHSA-------CVTDLYLCAGFSVAVSSS-EDGTCLLWDINTIGYIREIPCVDPNT-------PVSHVTMSETN 431 (556)
Q Consensus 367 ~~~~l~~h~~-------~V~~l~~s~~~~~l~sgs-~Dg~I~iwdl~~~~~v~~l~~~h~~~-------~V~~l~~sp~~ 431 (556)
++..+..+.. ....++|+|||++++++. .++.+.+||+.+++.++.+.. + .. ....+++++++
T Consensus 108 ~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~~~v~~~~Dg 185 (368)
T d1mdah_ 108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKS-A-SCFHIHPGAAATHYLGSCPA 185 (368)
T ss_dssp EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEEC-S-SCCCCEEEETTEEECCCCTT
T ss_pred EeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeec-c-CcceEccCCCceEEEEcCCC
Confidence 3333332221 123589999999887765 579999999999998887765 3 21 22345566666
Q ss_pred CeEEEEeecC-------------------------------cCCCCeEEEEEeCCcEEEEee---c-----------CCC
Q psy10778 432 GEIASVLQTT-------------------------------KTGGSILRLHTINAQLITSLA---S-----------ELR 466 (556)
Q Consensus 432 ~~i~s~s~~~-------------------------------~~~d~~I~iwdi~g~~i~~~~---~-----------~~~ 466 (556)
..++...... ...++.+++++..+..+.... . ...
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 265 (368)
T d1mdah_ 186 SLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAG 265 (368)
T ss_dssp SCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECS
T ss_pred CEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEecCCCEEEEeecCCceEEEeecccccceeeeeeecCCC
Confidence 6555543211 002233444444321111110 0 112
Q ss_pred eEEEEEeeCCCCCcceEEEEEe-CC--------CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-E-EEEEcCCCc
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGH-SD--------GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-H-LYASNTEGL 535 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~-~d--------g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~-l~sgs~Dg~ 535 (556)
...++++ +++ ..+++.. .+ ..|.+||..+++.+..+. +...+.+++|+|||+ + ++++..|+.
T Consensus 266 ~~~~a~~--~~~---~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~--~~~~~~~~a~spDG~~~ly~s~~~~~~ 338 (368)
T d1mdah_ 266 FQMVAKL--KNT---DGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPIS--NGHDSDAIIAAQDGASDNYANSAGTEV 338 (368)
T ss_dssp SSCEEEE--TTT---TEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCE--EEEEECEEEECCSSSCEEEEEETTTTE
T ss_pred ceeEEEc--CCC---CEEEEEecCCCceeecCCceEEEEECCCCcEeEEec--CCCceeEEEECCCCCEEEEEEeCCCCe
Confidence 2346777 666 4443332 22 358999999999998887 346788999999996 3 456778899
Q ss_pred EEEEEcCCCCCcCeee
Q psy10778 536 VIIWESSSHNRTPKFL 551 (556)
Q Consensus 536 V~vwdl~~~~~~~~~~ 551 (556)
|++||..+++.+.++.
T Consensus 339 v~v~D~~tgk~~~~i~ 354 (368)
T d1mdah_ 339 LDIYDAASDQDQSSVE 354 (368)
T ss_dssp EEEEESSSCEEEEECC
T ss_pred EEEEECCCCCEEEEEE
Confidence 9999999988765553
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.37 E-value=9.8e-11 Score=114.40 Aligned_cols=195 Identities=11% Similarity=-0.000 Sum_probs=131.1
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCC-----CceEEEEEcCCCCEEEEEe------------CCCcEEEEEeeecc
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLG-----ATIATATTAPDCHTLWLGL------------TSGNILVYEYELNA 357 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~-----~~V~~i~~s~dg~~l~tgs------------~Dg~I~vwd~~~~~ 357 (556)
++++++.++.|++||..+++....+..... ..+..++++|||+++++++ .++.+.+|+...+.
T Consensus 54 l~v~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 133 (346)
T d1jmxb_ 54 AYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL 133 (346)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEEESCCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred EEEEECCCCcEEEEeCccCeeeeeecccccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence 668888999999999998877665543221 2456789999999998875 35678888876542
Q ss_pred CcccccccCCCeEeeCCCccEEEEEEccCCCEEEE---------------------------------------------
Q psy10778 358 STNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVS--------------------------------------------- 392 (556)
Q Consensus 358 ~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~s--------------------------------------------- 392 (556)
... .+... .....+..+.+++++.++++
T Consensus 134 ~~~------~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (346)
T d1jmxb_ 134 EAK------PVRTF-PMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHE 206 (346)
T ss_dssp GBC------CSEEE-ECCSSCCCEEECTTSCEEEESSSEEEECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCE
T ss_pred eee------EEEee-eccCceEEEEecCCCEEEEeCCcceEEEccCCCEEEEEecCCCccceEEeccccEEEEEecCCCc
Confidence 111 11111 01112222333333332222
Q ss_pred -------------------EcCCCcEEEEeCCCCeEEEE-eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 393 -------------------SSEDGTCLLWDINTIGYIRE-IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 393 -------------------gs~Dg~I~iwdl~~~~~v~~-l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
+..++.+.+||+.++..... ... + ...+..+.+++++..++... .+.|.+||
T Consensus 207 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~------~~~v~v~d 278 (346)
T d1jmxb_ 207 FSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFAD-L-TELYFTGLRSPKDPNQIYGV------LNRLAKYD 278 (346)
T ss_dssp EEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEEEEE-C-SSCEEEEEECSSCTTEEEEE------ESEEEEEE
T ss_pred eEeeeeeeeeccCceeEeeccCCceEEEEECCCCceEEEEeec-c-cceeEEEEEeCCCCEEEEec------CCeEEEEE
Confidence 11123345555555443332 222 3 45667777888888877764 56899999
Q ss_pred eC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 453 IN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 453 i~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
.. ++.+..+.....+.+++|+ ||| +.|++++.||.|++||..+++.+.++..
T Consensus 279 ~~~~~~~~~~~~~~~~~~va~s--~DG---~~l~v~~~d~~v~v~D~~t~~~i~~i~~ 331 (346)
T d1jmxb_ 279 LKQRKLIKAANLDHTYYCVAFD--KKG---DKLYLGGTFNDLAVFNPDTLEKVKNIKL 331 (346)
T ss_dssp TTTTEEEEEEECSSCCCEEEEC--SSS---SCEEEESBSSEEEEEETTTTEEEEEEEC
T ss_pred CCCCcEEEEEcCCCCEEEEEEc--CCC---CEEEEEeCCCcEEEEECccCCEEEEEEC
Confidence 97 7888888888889999999 999 8999999999999999999999999874
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.33 E-value=6.8e-11 Score=115.33 Aligned_cols=188 Identities=12% Similarity=0.110 Sum_probs=132.1
Q ss_pred EEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEE-EEcCCCcEEEEeCCCCeE----EEE
Q psy10778 338 TLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGTCLLWDINTIGY----IRE 412 (556)
Q Consensus 338 ~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~I~iwdl~~~~~----v~~ 412 (556)
.+++++.|++|++|++..... . + +.....|.+.+.+|+|+|||++|+ ++..|+.|.+|++..... ...
T Consensus 6 v~v~~~~~~~I~v~~~~~~~~---l---~-~~~~~~~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~ 78 (333)
T d1ri6a_ 6 VYIASPESQQIHVWNLNHEGA---L---T-LTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAE 78 (333)
T ss_dssp EEEEEGGGTEEEEEEECTTSC---E---E-EEEEEECSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEE
T ss_pred EEEECCCCCcEEEEEEcCCCC---e---E-EEEEEcCCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeee
Confidence 457778999999999975410 0 1 122346888999999999999884 555689999999876532 223
Q ss_pred eCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCc-EE---EEeecCCCeEEEEEeeCCCCCcceEEEEEe
Q psy10778 413 IPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQ-LI---TSLASELRITSVTFSNAPEGVSQNVIVTGH 488 (556)
Q Consensus 413 l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~-~i---~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~ 488 (556)
... ...+..++|+|||+++++++. .++.+.+|+.... .. ....+...+.++.++ +++ +.+++++
T Consensus 79 ~~~---~~~p~~l~~spDg~~l~v~~~----~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s--~d~---~~~~~~~ 146 (333)
T d1ri6a_ 79 SAL---PGSLTHISTDHQGQFVFVGSY----NAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANIS--PDN---RTLWVPA 146 (333)
T ss_dssp EEC---SSCCSEEEECTTSSEEEEEET----TTTEEEEEEEETTEEEEEEEEECCCTTBCCCEEC--TTS---SEEEEEE
T ss_pred ccc---CCCceEEEEcCCCCEEeeccc----CCCceeeeccccccceecccccCCCccceEEEee--ecc---eeeeccc
Confidence 333 456788999999999998873 5778999988632 22 222456778899999 888 6666555
Q ss_pred -CCCeEEEEeCCCCeEEE-----EecCCCCCCeEEEEEecCCCEEEEEc-CCCcEEEEEcCCC
Q psy10778 489 -SDGTIQLWSGYKLAHLL-----TLNTNVALPVIAVTYSCDSQHLYASN-TEGLVIIWESSSH 544 (556)
Q Consensus 489 -~dg~I~iwd~~~~~~~~-----~~~~~h~~~V~~l~~s~dg~~l~sgs-~Dg~V~vwdl~~~ 544 (556)
.+..|.+|+........ ............++|++++..++... ..+...+|+....
T Consensus 147 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~g~~p~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~ 209 (333)
T d1ri6a_ 147 LKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKDP 209 (333)
T ss_dssp GGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSCT
T ss_pred cccceeeEEEeccCCcceeeeceeeeeecCCCccEEEEeccceeEEeeccccCceEEEeeccc
Confidence 56789999986543221 11213456678999999998877554 5667888887553
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.28 E-value=4.1e-10 Score=112.00 Aligned_cols=200 Identities=11% Similarity=-0.038 Sum_probs=142.9
Q ss_pred CCCCceEEEEEcCCCCEEEEEe-----CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc--
Q psy10778 322 PLGATIATATTAPDCHTLWLGL-----TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS-- 394 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs-----~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs-- 394 (556)
.+..++.+++++|||+.+++.. .++.|.+||..++ +.+..+..+..+ .++|+|||+++++++
T Consensus 18 ~~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg---------~~~~~~~~~~~~--~~a~SpDG~~l~va~~~ 86 (373)
T d2madh_ 18 AADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSG---------SILGHVNGGFLP--NPVAAHSGSEFALASTS 86 (373)
T ss_pred cCCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCC---------CEEEEEeCCCCc--cEEEcCCCCEEEEEeec
Confidence 5778899999999999987752 3456888887766 455666666544 699999999988764
Q ss_pred --------CCCcEEEEeCCCCeEEEEeCCCCCCCC-------eeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEE
Q psy10778 395 --------EDGTCLLWDINTIGYIREIPCVDPNTP-------VSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLI 458 (556)
Q Consensus 395 --------~Dg~I~iwdl~~~~~v~~l~~~h~~~~-------V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i 458 (556)
.++.|.+||+.+++.+..+.. + ... ...+.++++++.++..... .++.+.+|+.. ++..
T Consensus 87 ~~~~~~~~~~~~v~v~D~~t~~~~~~~~~-~-~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---~~~~~~~~~~~~~~~~ 161 (373)
T d2madh_ 87 FSRIAKGKRTDYVEVFDPVTFLPIADIEL-P-DAPRFDVGPYSWMNANTPNNADLLFFQFA---AGPAVGLVVQGGSSDD 161 (373)
T ss_pred CCcccccccceEEEEEECCCCcEEEEEec-C-CcceeEeccCCCcEEEEeCCCcEEEEEEc---CCCceEEeeccCCeEE
Confidence 468899999999999888776 4 332 2457888888877666521 45678888886 3333
Q ss_pred EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-----CCCCCeEEEEEecCCCEEEEEcCC
Q psy10778 459 TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-----NVALPVIAVTYSCDSQHLYASNTE 533 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-----~h~~~V~~l~~s~dg~~l~sgs~D 533 (556)
.. .....++.++ ++|. ..+++.+.||.+.+|+...++....... +.......+.+++++.. +..+.+
T Consensus 162 ~~---~~~~~~~~~s--~~g~--~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 233 (373)
T d2madh_ 162 QL---LSSPTCYHIH--PGAP--STFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRI-VWPVYS 233 (373)
T ss_pred EE---eccceeEEEe--cCCC--cEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCceE-EEecCC
Confidence 33 3445678888 7773 5668889999999999988877665542 11223345566666544 456678
Q ss_pred CcEEEEEcCCCC
Q psy10778 534 GLVIIWESSSHN 545 (556)
Q Consensus 534 g~V~vwdl~~~~ 545 (556)
+.+.+|+..+..
T Consensus 234 ~~v~~~~~~~~~ 245 (373)
T d2madh_ 234 GKILQADISAAG 245 (373)
T ss_pred ceEEEEEcCCCe
Confidence 899999987743
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.26 E-value=1.3e-10 Score=120.42 Aligned_cols=128 Identities=9% Similarity=-0.057 Sum_probs=98.3
Q ss_pred CCCeEEEEeCCCCCCcceEcC----CCCCceEEEEEcCCCCEEEEEeC---------CCcEEEEEeeeccCcccccccCC
Q psy10778 301 CDNLIRLKMSKELPATPVIRP----PLGATIATATTAPDCHTLWLGLT---------SGNILVYEYELNASTNKIEFCKP 367 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~----~h~~~V~~i~~s~dg~~l~tgs~---------Dg~I~vwd~~~~~~~~~~~~~~~ 367 (556)
.|+.+.+|+..+++...++.. .|...|.++.|+|||++|+.++. ++.+.+||+.++ .
T Consensus 34 ~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d~~~~----------~ 103 (470)
T d2bgra1 34 QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYDLNKR----------Q 103 (470)
T ss_dssp SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTT----------E
T ss_pred cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEECCCC----------c
Confidence 478899999998876654432 34578999999999999998853 567889998865 1
Q ss_pred CeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCC-----------------CCCeeEEEEeCC
Q psy10778 368 PTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDP-----------------NTPVSHVTMSET 430 (556)
Q Consensus 368 ~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~-----------------~~~V~~l~~sp~ 430 (556)
...+..|...+..+.|||||+.+|.. .++.+.+|+..+++..+.... +. .+....+.||||
T Consensus 104 ~~~l~~~~~~~~~~~~SPDG~~ia~~-~~~~l~~~~~~~g~~~~~t~~-~~~~~~~~g~~d~~~~~~~~~~~~~~~wSPD 181 (470)
T d2bgra1 104 LITEERIPNNTQWVTWSPVGHKLAYV-WNNDIYVKIEPNLPSYRITWT-GKEDIIYNGITDWVYEEEVFSAYSALWWSPN 181 (470)
T ss_dssp ECCSSCCCTTEEEEEECSSTTCEEEE-ETTEEEEESSTTSCCEECCSC-CBTTTEEESBCCHHHHHHTSSSSBCEEECTT
T ss_pred ccccccCCccccccccccCcceeeEe-ecccceEEECCCCceeeeeec-cCCCcccccccceeeeeeecCCccccEECCC
Confidence 24567788999999999999999985 467899999998876654432 10 123466889999
Q ss_pred CCeEEEEeec
Q psy10778 431 NGEIASVLQT 440 (556)
Q Consensus 431 ~~~i~s~s~~ 440 (556)
|+.|+....+
T Consensus 182 Gk~ia~~~~d 191 (470)
T d2bgra1 182 GTFLAYAQFN 191 (470)
T ss_dssp SSEEEEEEEE
T ss_pred CCccceeEec
Confidence 9999987643
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.11 E-value=1e-09 Score=107.98 Aligned_cols=196 Identities=10% Similarity=0.016 Sum_probs=128.4
Q ss_pred EEEEEcCCCCEEEEEe-----CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEE---------
Q psy10778 328 ATATTAPDCHTLWLGL-----TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSS--------- 393 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs-----~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sg--------- 393 (556)
...+.+|||+.+++.. .+++|.+||..++ +.+.++..+..+ .++|+|||+.|+++
T Consensus 5 ~~~a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg---------~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~ 73 (355)
T d2bbkh_ 5 ILEAPAPDARRVYVNDPAHFAAVTQQFVIDGEAG---------RVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIAR 73 (355)
T ss_dssp BCCCCCCCTTEEEEEECGGGCSSEEEEEEETTTT---------EEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTE
T ss_pred EeEeeCCCCCEEEEEecccCCCcCeEEEEECCCC---------cEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccc
Confidence 3345679999988763 4567999998776 445666655444 69999999977654
Q ss_pred -cCCCcEEEEeCCCCeEEEEeCCCCC------CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCC
Q psy10778 394 -SEDGTCLLWDINTIGYIREIPCVDP------NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASEL 465 (556)
Q Consensus 394 -s~Dg~I~iwdl~~~~~v~~l~~~h~------~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~ 465 (556)
+.|+.|.+||+.+++.+..+.. +. ......++|+++++.++++... .+..+.+|+.. ++.+..+....
T Consensus 74 g~~d~~v~v~D~~t~~~~~~~~~-~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 149 (355)
T d2bbkh_ 74 GERTDYVEVFDPVTLLPTADIEL-PDAPRFLVGTYPWMTSLTPDGKTLLFYQFS---PAPAVGVVDLEGKAFKRMLDVPD 149 (355)
T ss_dssp EEEEEEEEEECTTTCCEEEEEEE-TTCCCCCBSCCGGGEEECTTSSEEEEEECS---SSCEEEEEETTTTEEEEEEECCS
T ss_pred cCCCCEEEEEECCCCCEEEEEec-CCcceeecCCCCceEEEecCCCeeEEecCC---CCceeeeeecCCCcEeeEEecCC
Confidence 4578999999999998887653 20 1234568999999998877521 46789999997 67776665443
Q ss_pred CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEec-----CCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 466 RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN-----TNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 466 ~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~-----~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
........ . ...++.+.||...++.......+..+. ..+...+....+++++..++.++.+|.+++|+
T Consensus 150 ~~~~~~~~---~----~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (355)
T d2bbkh_ 150 CYHIFPTA---P----DTFFMHCRDGSLAKVAFGTEGTPEITHTEVFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQID 222 (355)
T ss_dssp EEEEEEEE---T----TEEEEEETTSCEEEEECCSSSCCEEEECCCCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEE
T ss_pred cceEeecC---C----cceEEEcCCCCEEEEEecCCCeEEEEecccccceecceeeeccccCCCCeEEEecCCCeEEEEe
Confidence 32221111 1 123333444444444333222111111 13344566678888999999999999999999
Q ss_pred cCCCC
Q psy10778 541 SSSHN 545 (556)
Q Consensus 541 l~~~~ 545 (556)
+..+.
T Consensus 223 ~~~~~ 227 (355)
T d2bbkh_ 223 LSSGD 227 (355)
T ss_dssp CTTSS
T ss_pred cCCCc
Confidence 98754
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.03 E-value=4.9e-09 Score=106.32 Aligned_cols=229 Identities=11% Similarity=0.069 Sum_probs=159.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcC-----------------------------CCCCceEEEEEcCCCCEEEEE-eC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRP-----------------------------PLGATIATATTAPDCHTLWLG-LT 344 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~-----------------------------~h~~~V~~i~~s~dg~~l~tg-s~ 344 (556)
.+++|+.+|.|++|++.+++.+..+.. .|.........+|||++|++. ..
T Consensus 13 ~f~Sgg~sG~V~V~dlpS~r~l~~IpVfspd~~~g~g~~~es~~vl~~~~~~~~gd~hhP~~s~t~gtpDGr~lfV~d~~ 92 (441)
T d1qnia2 13 GFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITNESKEILGGDQQYLNGDCHHPHISMTDGRYDGKYLFINDKA 92 (441)
T ss_dssp EEEECBTTCCEEEEEETTTEEEEEECSSSBCTTTCTTTSHHHHHHHCSSSCCSCCCBCCCEEEEETTEEEEEEEEEEETT
T ss_pred EEEeCCCCCcEEEEeCCCCcEEEEEEeEcCCCCEEEEECCccceEEecccccccCcccCCCcceecccCCCCEEEEEcCC
Confidence 467888999999999987765544322 133345555567899998666 47
Q ss_pred CCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEccCCC--EEEEEcCCC-----------------cEEEEeC
Q psy10778 345 SGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCAGFS--VAVSSSEDG-----------------TCLLWDI 404 (556)
Q Consensus 345 Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~~~~--~l~sgs~Dg-----------------~I~iwdl 404 (556)
+++|.++|+.+. +....+. .+......++++|+++ +++..+++. .+..+|.
T Consensus 93 ~~rVavIDl~t~---------k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD~ 163 (441)
T d1qnia2 93 NTRVARIRLDIM---------KTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAIDA 163 (441)
T ss_dssp TTEEEEEETTTT---------EEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEET
T ss_pred CCEEEEEECCCC---------cEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeecC
Confidence 789999998876 3334443 4567899999999998 444444332 2456888
Q ss_pred CCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc------------------------------------CCCCeE
Q psy10778 405 NTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK------------------------------------TGGSIL 448 (556)
Q Consensus 405 ~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~------------------------------------~~d~~I 448 (556)
.+.+...++.. ......++++|+|+++++.+.... ..++.+
T Consensus 164 ~t~~v~~qI~v---~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~ 240 (441)
T d1qnia2 164 ETMDVAWQVIV---DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVP 240 (441)
T ss_dssp TTCSEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCC
T ss_pred ccceeeEEEec---CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcE
Confidence 88888888776 466889999999999998875430 013344
Q ss_pred EEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCe------------EEEEecCCCCCC
Q psy10778 449 RLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLA------------HLLTLNTNVALP 514 (556)
Q Consensus 449 ~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~------------~~~~~~~~h~~~ 514 (556)
.+++.. .+.+..+........+.++ ||| +++ ++|..+++|.+||+.+.+ ...... ..-.
T Consensus 241 vvd~~~~~~v~~~IPvgksPhGv~vS--PDG---kyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~--~glg 313 (441)
T d1qnia2 241 VVDGRGESEFTRYIPVPKNPHGLNTS--PDG---KYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPE--LGLG 313 (441)
T ss_dssp EEECSSSCSSEEEECCBSSCCCEEEC--TTS---CEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCB--CCSC
T ss_pred EEEcccCCceEEEEeCCCCccCceEC--CCC---CEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecc--cccC
Confidence 444443 3455666656667889999 999 655 567789999999985422 111111 1223
Q ss_pred eEEEEEecCCCEEEEEcCCCcEEEEEcC
Q psy10778 515 VIAVTYSCDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 515 V~~l~~s~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
....+|+++|..+.+...|..|..|++.
T Consensus 314 plh~~fd~~g~~yts~~~ds~v~kw~~~ 341 (441)
T d1qnia2 314 PLHTTFDGRGNAYTTLFIDSQVCKWNIA 341 (441)
T ss_dssp EEEEEECSSSEEEEEETTTTEEEEEEHH
T ss_pred cccceecCCceEEEcccccceEEEeccc
Confidence 4556899999988899999999999985
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.01 E-value=2.2e-09 Score=108.88 Aligned_cols=236 Identities=10% Similarity=0.003 Sum_probs=158.7
Q ss_pred CcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCC--EEEEEeCCCc-----------------EEEEE
Q psy10778 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCH--TLWLGLTSGN-----------------ILVYE 352 (556)
Q Consensus 292 ~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~--~l~tgs~Dg~-----------------I~vwd 352 (556)
++.+++....+++|.++|+.+.+....+...+...+..++++|+|+ +++.++.+.. +..+|
T Consensus 83 Gr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~~~~~~~~~iD 162 (441)
T d1qnia2 83 GKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLDNSYTMFTAID 162 (441)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGGGEEEEEEEEE
T ss_pred CCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccccccceEEeec
Confidence 3346678889999999999999888887777788999999999998 4444443321 12233
Q ss_pred eeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC-------------------------------------
Q psy10778 353 YELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE------------------------------------- 395 (556)
Q Consensus 353 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~------------------------------------- 395 (556)
..+. +....+.. .+....+.++|+|+++++++.
T Consensus 163 ~~t~---------~v~~qI~v-~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~ 232 (441)
T d1qnia2 163 AETM---------DVAWQVIV-DGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK 232 (441)
T ss_dssp TTTC---------SEEEEEEE-SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred Cccc---------eeeEEEec-CCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence 3222 22222222 234677889999998877653
Q ss_pred ----CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC-------c------EE
Q psy10778 396 ----DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA-------Q------LI 458 (556)
Q Consensus 396 ----Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g-------~------~i 458 (556)
++.+.+++....+.++.+.. ......+.++|||+++++++. .+++|.+||+.. . ..
T Consensus 233 ~v~~~~v~vvd~~~~~~v~~~IPv---gksPhGv~vSPDGkyl~~~~~----~~~tvsv~d~~k~~~~~~~~~~~~~~~~ 305 (441)
T d1qnia2 233 TIGDSKVPVVDGRGESEFTRYIPV---PKNPHGLNTSPDGKYFIANGK----LSPTVSVIAIDKLDDLFEDKIELRDTIV 305 (441)
T ss_dssp CCTTCCCCEEECSSSCSSEEEECC---BSSCCCEEECTTSCEEEEECT----TSSBEEEEEGGGHHHHTTTSSCGGGGEE
T ss_pred EeCCCCcEEEEcccCCceEEEEeC---CCCccCceECCCCCEEEEeCC----cCCcEEEEEeehhhhHhhccCCcceEEE
Confidence 24556666666667777876 355688999999999887764 789999999741 1 12
Q ss_pred EEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCC----------CeEEEEec----CCCCCCeEEEEEecCC
Q psy10778 459 TSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYK----------LAHLLTLN----TNVALPVIAVTYSCDS 524 (556)
Q Consensus 459 ~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~----------~~~~~~~~----~~h~~~V~~l~~s~dg 524 (556)
......-.....+|+ ++| +.+.+...|..|..|++.. ...+..+. .+|...+.+.+++|||
T Consensus 306 ~~~~~glgplh~~fd--~~g---~~yts~~~ds~v~kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdG 380 (441)
T d1qnia2 306 AEPELGLGPLHTTFD--GRG---NAYTTLFIDSQVCKWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADG 380 (441)
T ss_dssp ECCBCCSCEEEEEEC--SSS---EEEEEETTTTEEEEEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCC
T ss_pred eecccccCcccceec--CCc---eEEEcccccceEEEeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCC
Confidence 222222344556888 888 8888888999999999731 12333332 2666667777899999
Q ss_pred CEEEEE---cCCC----------cEEEEEcCCCCCcCee
Q psy10778 525 QHLYAS---NTEG----------LVIIWESSSHNRTPKF 550 (556)
Q Consensus 525 ~~l~sg---s~Dg----------~V~vwdl~~~~~~~~~ 550 (556)
++|+++ +.|+ .-.+.|+.. +++..+
T Consensus 381 k~l~s~~k~s~dr~~~~g~~~~~~~q~~~i~~-~~~~~~ 418 (441)
T d1qnia2 381 KWLVVLSKFSKDRFLPVGPLHPENDQLIDISG-EEMKLV 418 (441)
T ss_dssp CEEEEEESCCGGGSCCCSSSCCEEEEEEECSS-SSCEEE
T ss_pred cEEEecCccccccCcCCCCCCCccceeEEecC-CeEEEE
Confidence 999999 5554 345667753 344433
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=98.97 E-value=5.8e-09 Score=103.93 Aligned_cols=208 Identities=8% Similarity=0.004 Sum_probs=127.4
Q ss_pred EeccCCCeEEEEeCCCCCCcceEcCCC------CCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCe
Q psy10778 297 CWNECDNLIRLKMSKELPATPVIRPPL------GATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPT 369 (556)
Q Consensus 297 ~~gs~Dg~I~lw~~~~~~~~~~~~~~h------~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~ 369 (556)
+.|+.|+.|++||..+++....+.... ......++|+|||++|+++. .++.+.+||+.+... ..
T Consensus 90 ~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~---------~~ 160 (368)
T d1mdah_ 90 AKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---------DQ 160 (368)
T ss_dssp TSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---------EE
T ss_pred cccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcE---------eE
Confidence 346778999999999887766654211 11233689999999998876 579999999876521 11
Q ss_pred EeeCC---------------------------------------------CccEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10778 370 ILLGH---------------------------------------------SACVTDLYLCAGFSVAVSSSEDGTCLLWDI 404 (556)
Q Consensus 370 ~l~~h---------------------------------------------~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl 404 (556)
.+..+ ...+....+.+++..+.+ ..+.+.++++
T Consensus 161 ~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~--~~~~v~~~~~ 238 (368)
T d1mdah_ 161 LTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA--VASSILQGDI 238 (368)
T ss_dssp EEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC--BSSCCEEEEC
T ss_pred EeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe--cCCCEEEEee
Confidence 11111 111222333333332222 2234444554
Q ss_pred CCCeEEEEeCCC-CC---------CCCeeEEEEeCCCCeEEEEeecCc----CCCCeEEEEEeC-CcEEEEeecCCCeEE
Q psy10778 405 NTIGYIREIPCV-DP---------NTPVSHVTMSETNGEIASVLQTTK----TGGSILRLHTIN-AQLITSLASELRITS 469 (556)
Q Consensus 405 ~~~~~v~~l~~~-h~---------~~~V~~l~~sp~~~~i~s~s~~~~----~~d~~I~iwdi~-g~~i~~~~~~~~i~~ 469 (556)
..+......... +. ......++++++++.++....... .....|.+||.. ++.+..+.....+.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~ 318 (368)
T d1mdah_ 239 PAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDA 318 (368)
T ss_dssp CSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEEEEECE
T ss_pred cCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeEEecCCCceeE
Confidence 443322211110 00 012345788999888776543221 123468899997 888888877778999
Q ss_pred EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEE
Q psy10778 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTY 520 (556)
Q Consensus 470 i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~ 520 (556)
++|+ |||.. .+++++..++.|++||..+++.+.++..+ ...+.|++
T Consensus 319 ~a~s--pDG~~-~ly~s~~~~~~v~v~D~~tgk~~~~i~~g--~~P~~l~~ 364 (368)
T d1mdah_ 319 IIAA--QDGAS-DNYANSAGTEVLDIYDAASDQDQSSVELD--KGPESLSV 364 (368)
T ss_dssp EEEC--CSSSC-EEEEEETTTTEEEEEESSSCEEEEECCCC--SCCCEEEC
T ss_pred EEEC--CCCCE-EEEEEeCCCCeEEEEECCCCCEEEEEECC--CCCCEEEE
Confidence 9999 88820 24567778899999999999999999842 33455544
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.87 E-value=1.1e-06 Score=82.50 Aligned_cols=218 Identities=9% Similarity=-0.018 Sum_probs=134.1
Q ss_pred eEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEE
Q psy10778 304 LIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS-GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLY 382 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D-g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~ 382 (556)
.|.|.|........+. .+...+..-+|||||+.||..... +...+|...... .....+..+........
T Consensus 20 ~l~i~d~dG~~~~~l~--~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~ 89 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVH--RSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLAN--------GAVRQVASFPRHNGAPA 89 (269)
T ss_dssp EEEEEETTSCSCEEEE--EESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--------CCEEEEECCSSCEEEEE
T ss_pred EEEEEcCCCCCcEEEe--cCCCceeeeEECCCCCEEEEEEeeccCcceeeeeccc--------CceeEEeeeecccccce
Confidence 5777777655554444 356678899999999999876533 333444443221 22356677888889999
Q ss_pred EccCCCEEEEEcC-CCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCC--eEEEEEeCCcE
Q psy10778 383 LCAGFSVAVSSSE-DGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGS--ILRLHTINAQL 457 (556)
Q Consensus 383 ~s~~~~~l~sgs~-Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~--~I~iwdi~g~~ 457 (556)
|+|+|+.++..+. ++. +..+............. ........+++++..++..+. .++ .|.+.++.+..
T Consensus 90 ~spdg~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~g~~~i~~~~~~~~~ 162 (269)
T d2hqsa1 90 FSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDG---RSNNTEPTWFPDSQNLAFTSD----QAGRPQVYKVNINGGA 162 (269)
T ss_dssp ECTTSSEEEEEECTTSSCEEEEEETTTCCEEECCCC---SSCEEEEEECTTSSEEEEEEC----TTSSCEEEEEETTSSC
T ss_pred ecCCCCeeeEeeecCCccceeecccccccceeeeec---cccccccccccccccceeccc----ccCCceEeeeeccccc
Confidence 9999998776553 333 23333333333333333 455566778888877766653 333 45566666433
Q ss_pred EEEe-ecCCCeEEEEEeeCCCCCcceEEEEEe-CCCeEE--EEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC-
Q psy10778 458 ITSL-ASELRITSVTFSNAPEGVSQNVIVTGH-SDGTIQ--LWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT- 532 (556)
Q Consensus 458 i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~-~dg~I~--iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~- 532 (556)
.... ..........|+ |++ +.++..+ ..|... +.+...+.. .... +........|||||+.|+-.+.
T Consensus 163 ~~~~~~~~~~~~~~~~s--pdg---~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~--~~~~~~~p~~SPDG~~i~f~s~~ 234 (269)
T d2hqsa1 163 PQRITWEGSQNQDADVS--SDG---KFMVMVSSNGGQQHIAKQDLATGGV-QVLS--STFLDETPSLAPNGTMVIYSSSQ 234 (269)
T ss_dssp CEECCCSSSEEEEEEEC--TTS---SEEEEEEECSSCEEEEEEETTTCCE-EECC--CSSSCEEEEECTTSSEEEEEEEE
T ss_pred ceeeecccccccccccc--ccc---ceeEEEeecCCceeeeEeecccccc-eEee--cCccccceEECCCCCEEEEEEcC
Confidence 3332 345667778899 888 5555544 444444 445444433 3332 3566788899999998875443
Q ss_pred --CCcEEEEEcCCCCC
Q psy10778 533 --EGLVIIWESSSHNR 546 (556)
Q Consensus 533 --Dg~V~vwdl~~~~~ 546 (556)
...|+++++..+..
T Consensus 235 ~~~~~l~~~~~dg~~~ 250 (269)
T d2hqsa1 235 GMGSVLNLVSTDGRFK 250 (269)
T ss_dssp TTEEEEEEEETTSCCE
T ss_pred CCCcEEEEEECCCCCE
Confidence 34788999987554
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.76 E-value=3.7e-06 Score=79.90 Aligned_cols=158 Identities=8% Similarity=0.093 Sum_probs=121.2
Q ss_pred CCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEE
Q psy10778 374 HSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHT 452 (556)
Q Consensus 374 h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwd 452 (556)
.......+++.+++.++++....+.+.+++.. ++.+.++.. .+ ......+++.+++..+++.. ..+.|++||
T Consensus 112 ~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~-~~~~~~i~~d~~g~i~v~d~-----~~~~V~~~d 184 (279)
T d1q7fa_ 112 ILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKH-LEFPNGVVVNDKQEIFISDN-----RAHCVKVFN 184 (279)
T ss_dssp TCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTT-CSSEEEEEECSSSEEEEEEG-----GGTEEEEEE
T ss_pred cccccceeccccCCcEEEEeeccceeeEeccC-Cceeeccccccc-ccccceeeeccceeEEeeec-----cccceeeee
Confidence 44567889999999988888888889898865 666776532 03 46788899999987777666 788999999
Q ss_pred eCCcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeC-CCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEE
Q psy10778 453 INAQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHS-DGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHL 527 (556)
Q Consensus 453 i~g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~-dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l 527 (556)
.+|+.+..+.. ......|++. ++| +++++-.. ++.|.+++ .+++.+..+.. ........|++.+||.++
T Consensus 185 ~~G~~~~~~g~~g~~~~P~giavD--~~G---~i~Vad~~~~~~v~~f~-~~G~~~~~~~~~~~~~~p~~vav~~dG~l~ 258 (279)
T d1q7fa_ 185 YEGQYLRQIGGEGITNYPIGVGIN--SNG---EILIADNHNNFNLTIFT-QDGQLISALESKVKHAQCFDVALMDDGSVV 258 (279)
T ss_dssp TTCCEEEEESCTTTSCSEEEEEEC--TTC---CEEEEECSSSCEEEEEC-TTSCEEEEEEESSCCSCEEEEEEETTTEEE
T ss_pred cCCceeeeecccccccCCcccccc--cCC---eEEEEECCCCcEEEEEC-CCCCEEEEEeCCCCCCCEeEEEEeCCCcEE
Confidence 99998888753 3457899999 899 77777553 45799998 47888877753 223468999999999755
Q ss_pred EEEcCCCcEEEEEcCCCC
Q psy10778 528 YASNTEGLVIIWESSSHN 545 (556)
Q Consensus 528 ~sgs~Dg~V~vwdl~~~~ 545 (556)
+ ++.+++|++|......
T Consensus 259 V-~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 259 L-ASKDYRLYIYRYVQLA 275 (279)
T ss_dssp E-EETTTEEEEEECSCCC
T ss_pred E-EeCCCeEEEEEeeeec
Confidence 5 5578999999987643
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.75 E-value=7.2e-07 Score=84.07 Aligned_cols=224 Identities=9% Similarity=-0.064 Sum_probs=141.5
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
+++..+..+.+..++....... .....-......++++++|+.+++....+.+++++-... .. ......
T Consensus 28 ~v~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~~~~~~~---------~~-~~~~~~ 96 (260)
T d1rwia_ 28 YVTSEGMYGRVVKLATGSTGTT-VLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTLAAGSNN---------QT-VLPFDG 96 (260)
T ss_dssp EEEECSSSCEEEEEC----CEE-ECCCCSCCSCCCEEECTTCCEEEEETTTEEEEECTTCSC---------CE-ECCCCS
T ss_pred EEEEcCCCCEEEEEcCCCceEE-EeccCCccCceEEEEcCCCCEEEeeeeeceeeeeeeccc---------ee-eeeeee
Confidence 4444455566665554432211 111122234567889999988877766666655442221 00 111122
Q ss_pred CccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC
Q psy10778 375 SACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN 454 (556)
Q Consensus 375 ~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~ 454 (556)
.....++++.+++++.++-..+..+..++............ . ......+++++++..+++.. .++.|..++.+
T Consensus 97 ~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~-~-~~~p~~i~~~~~g~~~v~~~-----~~~~i~~~d~~ 169 (260)
T d1rwia_ 97 LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT-G-LNDPDGVAVDNSGNVYVTDT-----DNNRVVKLEAE 169 (260)
T ss_dssp CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC-S-CCSCCEEEECTTCCEEEEEG-----GGTEEEEECTT
T ss_pred eeecccccccccceeEeeccccccccccccccceeeeeeec-c-cCCcceeeecCCCCEeeecc-----ccccccccccc
Confidence 35678999999999888877777788887765432222111 1 35568899999988777666 67889999988
Q ss_pred CcEEEEee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcC
Q psy10778 455 AQLITSLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNT 532 (556)
Q Consensus 455 g~~i~~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~ 532 (556)
+....... .-.....+++. ++| +++++....+.|..++.... ....+....-....+|+++++|.++++-..
T Consensus 170 ~~~~~~~~~~~~~~p~gi~~d--~~g---~l~vsd~~~~~i~~~~~~~~-~~~~~~~~~~~~P~~i~~d~~g~l~vad~~ 243 (260)
T d1rwia_ 170 SNNQVVLPFTDITAPWGIAVD--EAG---TVYVTEHNTNQVVKLLAGST-TSTVLPFTGLNTPLAVAVDSDRTVYVADRG 243 (260)
T ss_dssp TCCEEECCCSSCCSEEEEEEC--TTC---CEEEEETTTTEEEEECTTCS-CCEECCCCSCCCEEEEEECTTCCEEEEEGG
T ss_pred cceeeeeeccccCCCccceee--eee---eeeeeecCCCEEEEEeCCCC-eEEEEccCCCCCeEEEEEeCCCCEEEEECC
Confidence 65544442 34567899998 888 88888888899988886433 233332223356789999999998888777
Q ss_pred CCcEEEEEcC
Q psy10778 533 EGLVIIWESS 542 (556)
Q Consensus 533 Dg~V~vwdl~ 542 (556)
+++|+..+..
T Consensus 244 ~~rI~~i~~~ 253 (260)
T d1rwia_ 244 NDRVVKLTSL 253 (260)
T ss_dssp GTEEEEECCC
T ss_pred CCEEEEEeCC
Confidence 7777655543
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=98.71 E-value=4.6e-08 Score=100.58 Aligned_cols=153 Identities=12% Similarity=0.017 Sum_probs=112.2
Q ss_pred EEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC----CCCCCeeEEEEeCCCCeEEEEeecC----cCCCCeEEEE
Q psy10778 380 DLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV----DPNTPVSHVTMSETNGEIASVLQTT----KTGGSILRLH 451 (556)
Q Consensus 380 ~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~----h~~~~V~~l~~sp~~~~i~s~s~~~----~~~d~~I~iw 451 (556)
.+.|.++++++.. .|+.+.+||+.+++....+... + ...|.+++||||++.|+.++... .+.++.+.+|
T Consensus 21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~-~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~ 97 (470)
T d2bgra1 21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEF-GHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIY 97 (470)
T ss_dssp CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTS-SSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEE
T ss_pred CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhc-cCccceeEECCCCCEEEEEECCcceeeeccCceEEEE
Confidence 4779999887664 5788999999999877665540 3 36799999999999999886311 1135788999
Q ss_pred EeCCcEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCC-----------------CC
Q psy10778 452 TINAQLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNV-----------------AL 513 (556)
Q Consensus 452 di~g~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h-----------------~~ 513 (556)
|+.+..+..+ .+...+..+.|| ||| +.+|.. .++.+++|+..+++..+....+. .+
T Consensus 98 d~~~~~~~~l~~~~~~~~~~~~S--PDG---~~ia~~-~~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~ 171 (470)
T d2bgra1 98 DLNKRQLITEERIPNNTQWVTWS--PVG---HKLAYV-WNNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFS 171 (470)
T ss_dssp ETTTTEECCSSCCCTTEEEEEEC--SST---TCEEEE-ETTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSS
T ss_pred ECCCCcccccccCCccccccccc--cCc---ceeeEe-ecccceEEECCCCceeeeeeccCCCcccccccceeeeeeecC
Confidence 9985555444 467889999999 999 778875 46789999998887665443211 23
Q ss_pred CeEEEEEecCCCEEEEEcCCCc-EEEEEc
Q psy10778 514 PVIAVTYSCDSQHLYASNTEGL-VIIWES 541 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~Dg~-V~vwdl 541 (556)
....+.|||||+.|+....|.+ +..|.+
T Consensus 172 ~~~~~~wSPDGk~ia~~~~d~~~v~~~~~ 200 (470)
T d2bgra1 172 AYSALWWSPNGTFLAYAQFNDTEVPLIEY 200 (470)
T ss_dssp SSBCEEECTTSSEEEEEEEECTTCCEEEE
T ss_pred CccccEECCCCCccceeEecCCcCceEEE
Confidence 3456889999999998876533 554444
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.68 E-value=3.5e-06 Score=81.67 Aligned_cols=223 Identities=12% Similarity=0.074 Sum_probs=140.8
Q ss_pred CCeEEEEeCCCCCCcceEcC---CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCC-cc
Q psy10778 302 DNLIRLKMSKELPATPVIRP---PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHS-AC 377 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~---~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~-~~ 377 (556)
+|.|..|+.+++........ ...+.-..+++.++++.++++...+.|...+.+.... .. ......+.. ..
T Consensus 45 ~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~i~~~~~~g~~~--~~----~~~~~~g~~~~~ 118 (314)
T d1pjxa_ 45 AGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLGLLVVQTDGTFE--EI----AKKDSEGRRMQG 118 (314)
T ss_dssp CCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTEEEEEETTSCEE--EC----CSBCTTSCBCBC
T ss_pred CCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCeEEEEeCCCcEE--EE----EeccccccccCC
Confidence 56777777776543332211 1112356799999999888887767777777553210 00 000011111 13
Q ss_pred EEEEEEccCCCEEEEEcC---------------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCC----eEEEEe
Q psy10778 378 VTDLYLCAGFSVAVSSSE---------------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNG----EIASVL 438 (556)
Q Consensus 378 V~~l~~s~~~~~l~sgs~---------------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~----~i~s~s 438 (556)
.+.+++.++|.+.++-.. +|.|..++.. ++....... -...+.++|++++. .+.++.
T Consensus 119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~---~~~pNGi~~~~d~d~~~~~lyv~d 194 (314)
T d1pjxa_ 119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA---FQFPNGIAVRHMNDGRPYQLIVAE 194 (314)
T ss_dssp CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE---ESSEEEEEEEECTTSCEEEEEEEE
T ss_pred CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCC---cceeeeeEECCCCCcceeEEEEEe
Confidence 578999999998777432 2345555543 443333332 33457899998764 444443
Q ss_pred ecCcCCCCeEEEEEeC--CcEEE-----Eee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC
Q psy10778 439 QTTKTGGSILRLHTIN--AQLIT-----SLA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT 509 (556)
Q Consensus 439 ~~~~~~d~~I~iwdi~--g~~i~-----~~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~ 509 (556)
. ..+.|..||++ +.+.. .+. .......+++. .+| ++.++....+.|.+||...++.+..+.
T Consensus 195 ~----~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD--~~G---nlyVa~~~~g~I~~~dp~~g~~~~~i~- 264 (314)
T d1pjxa_ 195 T----PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDN---NLLVANWGSSHIEVFGPDGGQPKMRIR- 264 (314)
T ss_dssp T----TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTC---CEEEEEETTTEEEEECTTCBSCSEEEE-
T ss_pred e----cccceEEeeccCccccceeeEEEEccccccccceeeEEe--cCC---cEEEEEcCCCEEEEEeCCCCEEEEEEE-
Confidence 2 67889999885 33321 111 12345688998 889 888888889999999988777766666
Q ss_pred CCCCCeEEEEEecCCCE-EEEEcCCCcEEEEEcCCC
Q psy10778 510 NVALPVIAVTYSCDSQH-LYASNTEGLVIIWESSSH 544 (556)
Q Consensus 510 ~h~~~V~~l~~s~dg~~-l~sgs~Dg~V~vwdl~~~ 544 (556)
.....+++++|.+|++. +++.+.+|+|...++...
T Consensus 265 ~p~~~~t~~afg~d~~~lyVt~~~~g~i~~~~~~~~ 300 (314)
T d1pjxa_ 265 CPFEKPSNLHFKPQTKTIFVTEHENNAVWKFEWQRN 300 (314)
T ss_dssp CSSSCEEEEEECTTSSEEEEEETTTTEEEEEECSSC
T ss_pred CCCCCEEEEEEeCCCCEEEEEECCCCcEEEEECCCC
Confidence 33467899999999974 566677899998888663
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.67 E-value=8.5e-07 Score=85.54 Aligned_cols=191 Identities=8% Similarity=-0.031 Sum_probs=135.5
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDIN 405 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~ 405 (556)
.+..+++.|||+++++...+++|..|+.... ...+......+.+++++++|+++++...++.+..|+..
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~p~g~-----------~~~~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~ 97 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSITPDGN-----------QQIHATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLV 97 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEECTTCC-----------EEEEEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEE
T ss_pred CcCCEEECCCCCEEEEeCCCCEEEEEeCCCC-----------EEEEEcCCCCcceEEEcCCCCeEEEecCCceEEEEEec
Confidence 4778999999999999998998877764321 24455667789999999999999998888888888765
Q ss_pred CC--eE--EEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee------------cCCCeEE
Q psy10778 406 TI--GY--IREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA------------SELRITS 469 (556)
Q Consensus 406 ~~--~~--v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~------------~~~~i~~ 469 (556)
.. .. +..... ......+++.+++..+++.+ .++.+..++.++....... .......
T Consensus 98 ~~~~~~~~~~~~~~---~~~~n~i~~~~~g~~~v~~~-----~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ng 169 (302)
T d2p4oa1 98 KSDGTVETLLTLPD---AIFLNGITPLSDTQYLTADS-----YRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANG 169 (302)
T ss_dssp CTTSCEEEEEECTT---CSCEEEEEESSSSEEEEEET-----TTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEE
T ss_pred ccccceeeccccCC---ccccceeEEccCCCEEeecc-----ccccceeeeccCCcceeEecCCccceeeccCccccccc
Confidence 32 22 222332 56788999999988877766 6788888888744333221 0134566
Q ss_pred EEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE---EEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 470 VTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL---LTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 470 i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~---~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+.++ .+ .++++.+..+.|..++....... ..+. .......++++++|++.++...+++|..++...
T Consensus 170 i~~~--~~----~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~~~pdgia~d~dG~l~va~~~~~~V~~i~p~G 238 (302)
T d2p4oa1 170 LKRF--GN----FLYVSNTEKMLLLRIPVDSTDKPGEPEIFV--EQTNIDDFAFDVEGNLYGATHIYNSVVRIAPDR 238 (302)
T ss_dssp EEEE--TT----EEEEEETTTTEEEEEEBCTTSCBCCCEEEE--ESCCCSSEEEBTTCCEEEECBTTCCEEEECTTC
T ss_pred cccc--CC----ceeeecCCCCeEEecccccccccccccccc--CCCCCcceEECCCCCEEEEEcCCCcEEEECCCC
Confidence 6666 33 57778888899998887543321 1111 124456799999999888888889999887654
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.62 E-value=1.4e-06 Score=82.09 Aligned_cols=198 Identities=9% Similarity=-0.015 Sum_probs=134.1
Q ss_pred CCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEE
Q psy10778 323 LGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLL 401 (556)
Q Consensus 323 h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~i 401 (556)
+...-..++++++|+..++.. ..+.+..++..... ......+-......+++++++.+.++....+.+++
T Consensus 12 ~~~~P~~vavd~dG~i~v~~~~~~~~i~~~~~~~~~---------~~~~~~~~~~~p~gvav~~~g~i~v~d~~~~~i~~ 82 (260)
T d1rwia_ 12 FRLSPSGVAVDSAGNVYVTSEGMYGRVVKLATGSTG---------TTVLPFNGLYQPQGLAVDGAGTVYVTDFNNRVVTL 82 (260)
T ss_dssp SCCCEEEEEECTTCCEEEEECSSSCEEEEEC----C---------EEECCCCSCCSCCCEEECTTCCEEEEETTTEEEEE
T ss_pred CcCCCCEEEEcCCCCEEEEEcCCCCEEEEEcCCCce---------EEEeccCCccCceEEEEcCCCCEEEeeeeeceeee
Confidence 344568999999999776654 44666666554321 00011111233567899999998888887777777
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe--ecCCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL--ASELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~--~~~~~i~~i~~s~~pdg~ 479 (556)
++-.++..+..... ......+++++++..+++-. .+..+..++..+...... .......+++++ ++|
T Consensus 83 ~~~~~~~~~~~~~~---~~~p~~iavd~~g~i~v~d~-----~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~--~~g- 151 (260)
T d1rwia_ 83 AAGSNNQTVLPFDG---LNYPEGLAVDTQGAVYVADR-----GNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVD--NSG- 151 (260)
T ss_dssp CTTCSCCEECCCCS---CCSEEEEEECTTCCEEEEEG-----GGTEEEEECTTCSSCEECCCCSCCSCCEEEEC--TTC-
T ss_pred eeeccceeeeeeee---eeecccccccccceeEeecc-----ccccccccccccceeeeeeecccCCcceeeec--CCC-
Confidence 76665555544443 46688999999988776654 566777777765443333 233566789998 888
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
+++++...++.|..++...... ..+..........|+++++|.++++....+.|..++...
T Consensus 152 --~~~v~~~~~~~i~~~d~~~~~~-~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~ 212 (260)
T d1rwia_ 152 --NVYVTDTDNNRVVKLEAESNNQ-VVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGS 212 (260)
T ss_dssp --CEEEEEGGGTEEEEECTTTCCE-EECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTC
T ss_pred --CEeeecccccccccccccccee-eeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCC
Confidence 7888888889999999764433 333323446678999999999988888888898887654
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.62 E-value=1.6e-05 Score=75.33 Aligned_cols=185 Identities=12% Similarity=0.096 Sum_probs=132.8
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe--e
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL--L 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l--~ 372 (556)
+++..+.++.|..++.. +.....+..........++..++|+++++....+.+.+++.... .+..+ .
T Consensus 85 ~~~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~g~----------~~~~~g~~ 153 (279)
T d1q7fa_ 85 IVTERSPTHQIQIYNQY-GQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGN----------VLHKFGCS 153 (279)
T ss_dssp EEEECGGGCEEEEECTT-SCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSC----------EEEEEECT
T ss_pred ceeccCCcccccccccc-ccceeecCCCcccccceeccccCCcEEEEeeccceeeEeccCCc----------eeeccccc
Confidence 44455566677777764 44444444445567789999999998888777777777764321 12222 3
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-CCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-DPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
.+......+++.+++.++++....+.|.++|.. ++.+.++... . ......|+++++|+.+++-.. .++.|.+|
T Consensus 154 ~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~-G~~~~~~g~~g~-~~~P~giavD~~G~i~Vad~~----~~~~v~~f 227 (279)
T d1q7fa_ 154 KHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGI-TNYPIGVGINSNGEILIADNH----NNFNLTIF 227 (279)
T ss_dssp TTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTT-SCSEEEEEECTTCCEEEEECS----SSCEEEEE
T ss_pred ccccccceeeeccceeEEeeeccccceeeeecC-Cceeeeeccccc-ccCCcccccccCCeEEEEECC----CCcEEEEE
Confidence 456678899999999999999999999999975 6778777430 2 345789999999987766441 34579999
Q ss_pred EeCCcEEEEeec---CCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe
Q psy10778 452 TINAQLITSLAS---ELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA 502 (556)
Q Consensus 452 di~g~~i~~~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~ 502 (556)
+.+|+.+.++.. ......+++. ++| .++ +++.++.|++|...+..
T Consensus 228 ~~~G~~~~~~~~~~~~~~p~~vav~--~dG---~l~-V~~~n~~v~~fr~~~~~ 275 (279)
T d1q7fa_ 228 TQDGQLISALESKVKHAQCFDVALM--DDG---SVV-LASKDYRLYIYRYVQLA 275 (279)
T ss_dssp CTTSCEEEEEEESSCCSCEEEEEEE--TTT---EEE-EEETTTEEEEEECSCCC
T ss_pred CCCCCEEEEEeCCCCCCCEeEEEEe--CCC---cEE-EEeCCCeEEEEEeeeec
Confidence 999998887753 2467899999 898 654 45678999999876543
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.59 E-value=1.3e-05 Score=76.93 Aligned_cols=215 Identities=10% Similarity=0.033 Sum_probs=143.4
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEe--e
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTIL--L 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l--~ 372 (556)
++++...+++|+.++.... ..... .....+.+++++++|+++++...++.+..|+...... ....+ .
T Consensus 41 l~vt~~~~~~I~~i~p~g~-~~~~~--~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~--------~~~~~~~~ 109 (302)
T d2p4oa1 41 IFVTNHEVGEIVSITPDGN-QQIHA--TVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDG--------TVETLLTL 109 (302)
T ss_dssp EEEEETTTTEEEEECTTCC-EEEEE--ECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTS--------CEEEEEEC
T ss_pred EEEEeCCCCEEEEEeCCCC-EEEEE--cCCCCcceEEEcCCCCeEEEecCCceEEEEEeccccc--------ceeecccc
Confidence 6666777888888876542 22222 3557899999999999999998889998888765411 11122 2
Q ss_pred CCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCC-------C-CCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 373 GHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCV-------D-PNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 373 ~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~-------h-~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
........+++.++++++++.+.++.+..+|...+......... + .......++++ +..+..+.. .
T Consensus 110 ~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~--~~~l~~~~~----~ 183 (302)
T d2p4oa1 110 PDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRF--GNFLYVSNT----E 183 (302)
T ss_dssp TTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEE--TTEEEEEET----T
T ss_pred CCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCccccccccccc--CCceeeecC----C
Confidence 24456889999999999999999999999998876543322110 1 01234556655 344544432 6
Q ss_pred CCeEEEEEeCCc----EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEE--EecCCCCCCeEEE
Q psy10778 445 GSILRLHTINAQ----LITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLL--TLNTNVALPVIAV 518 (556)
Q Consensus 445 d~~I~iwdi~g~----~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~--~~~~~h~~~V~~l 518 (556)
.+.|..+++++. .............++++ ++| +++++...++.|..++.. ++... ... ..-...+++
T Consensus 184 ~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d--~dG---~l~va~~~~~~V~~i~p~-G~~~~~~~~~-~~~~~pt~v 256 (302)
T d2p4oa1 184 KMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFD--VEG---NLYGATHIYNSVVRIAPD-RSTTIIAQAE-QGVIGSTAV 256 (302)
T ss_dssp TTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEB--TTC---CEEEECBTTCCEEEECTT-CCEEEEECGG-GTCTTEEEE
T ss_pred CCeEEeccccccccccccccccCCCCCcceEEC--CCC---CEEEEEcCCCcEEEECCC-CCEEEEEecC-CCCCCceEE
Confidence 788888887621 11222234556789999 899 888888888999999864 44333 333 234568999
Q ss_pred EE---ecCCCEEEEEcCC
Q psy10778 519 TY---SCDSQHLYASNTE 533 (556)
Q Consensus 519 ~~---s~dg~~l~sgs~D 533 (556)
+| ++|++.|+.++..
T Consensus 257 afg~~~~D~~~Lyvtt~~ 274 (302)
T d2p4oa1 257 AFGQTEGDCTAIYVVTNG 274 (302)
T ss_dssp EECCSTTTTTEEEEEECT
T ss_pred EEcCCCCCCCEEEEECCC
Confidence 99 6788888876544
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.59 E-value=3.8e-05 Score=74.27 Aligned_cols=226 Identities=8% Similarity=0.028 Sum_probs=143.0
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC--CcEEEEEeeeccCcccccccCCCeEee
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS--GNILVYEYELNASTNKIEFCKPPTILL 372 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D--g~I~vwd~~~~~~~~~~~~~~~~~~l~ 372 (556)
+..+....+.|..++.+++....... ........+++.++|+++++...+ ....++.+.... ..+....
T Consensus 53 Ly~~D~~~g~I~ri~p~g~~~~~~~~-~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~--------~~~~~~~ 123 (319)
T d2dg1a1 53 LFLLDVFEGNIFKINPETKEIKRPFV-SHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENG--------DNLQDII 123 (319)
T ss_dssp EEEEETTTCEEEEECTTTCCEEEEEE-CSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTS--------CSCEEEE
T ss_pred EEEEECCCCEEEEEECCCCeEEEEEe-CCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCC--------ceeeeec
Confidence 34445567788888877655444433 445567899999999988776433 344455544321 1112222
Q ss_pred CC---CccEEEEEEccCCCEEEEEcC------CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcC
Q psy10778 373 GH---SACVTDLYLCAGFSVAVSSSE------DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKT 443 (556)
Q Consensus 373 ~h---~~~V~~l~~s~~~~~l~sgs~------Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~ 443 (556)
.+ ......+++.++|++.++... .+.+..++... +.+..+.. . -...+.++|+|+++.|..+..
T Consensus 124 ~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg-~~~~~~~~-~-~~~pnGia~s~dg~~lyvad~---- 196 (319)
T d2dg1a1 124 EDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDF-RTVTPIIQ-N-ISVANGIALSTDEKVLWVTET---- 196 (319)
T ss_dssp CSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTS-CCEEEEEE-E-ESSEEEEEECTTSSEEEEEEG----
T ss_pred cCCCcccCCcceeEEeccceeecccccccccCcceeEEEeccc-ceeEEEee-c-cceeeeeeeccccceEEEecc----
Confidence 22 234778999999987776432 23355555443 33333222 1 345678999999987766643
Q ss_pred CCCeEEEEEeC--CcEEEEe--------ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC----
Q psy10778 444 GGSILRLHTIN--AQLITSL--------ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT---- 509 (556)
Q Consensus 444 ~d~~I~iwdi~--g~~i~~~--------~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~---- 509 (556)
..+.|..|+++ +...... ........+++. .+| ++.++...++.|.++|. +++.+..+..
T Consensus 197 ~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD--~~G---~l~Va~~~~g~V~~~~p-~G~~l~~i~~P~~~ 270 (319)
T d2dg1a1 197 TANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCID--SDD---NLYVAMYGQGRVLVFNK-RGYPIGQILIPGRD 270 (319)
T ss_dssp GGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEB--TTC---CEEEEEETTTEEEEECT-TSCEEEEEECTTGG
T ss_pred cCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEc--CCC---CEEEEEcCCCEEEEECC-CCcEEEEEeCCCcC
Confidence 67899999985 3222111 112346789998 899 88888889999999995 7898888763
Q ss_pred -CCCCCeEEEEEecCCCEEEEEcCC------CcEEEEEcC
Q psy10778 510 -NVALPVIAVTYSCDSQHLYASNTE------GLVIIWESS 542 (556)
Q Consensus 510 -~h~~~V~~l~~s~dg~~l~sgs~D------g~V~vwdl~ 542 (556)
++...+++++|.+++..+++.+.+ |.|+..+..
T Consensus 271 ~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~g~l~~~~~~ 310 (319)
T d2dg1a1 271 EGHMLRSTHPQFIPGTNQLIICSNDIEMGGGSMLYTVNGF 310 (319)
T ss_dssp GTCSCBCCEEEECTTSCEEEEEEECGGGTCCEEEEEEECS
T ss_pred CCcCceeeeEEEeCCCCEEEEEcCCCCcCCceeEEEEeCC
Confidence 233467899999988777665432 445555553
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.40 E-value=5.3e-05 Score=73.19 Aligned_cols=208 Identities=11% Similarity=0.031 Sum_probs=132.1
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC----CCcEEE
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE----DGTCLL 401 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~----Dg~I~i 401 (556)
.+..++|.++|++.++-...+.|..|+.... ...............++++++|+++++... .+.+..
T Consensus 41 ~lEG~~~D~~G~Ly~~D~~~g~I~ri~p~g~---------~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~ 111 (319)
T d2dg1a1 41 QLEGLNFDRQGQLFLLDVFEGNIFKINPETK---------EIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFA 111 (319)
T ss_dssp CEEEEEECTTSCEEEEETTTCEEEEECTTTC---------CEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEE
T ss_pred CcEeCEECCCCCEEEEECCCCEEEEEECCCC---------eEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEE
Confidence 3457899999997777777888877765543 122334455567889999999998877643 234555
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-cCCCCeEEEEEeCCcEEEEe-ecCCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT-KTGGSILRLHTINAQLITSL-ASELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~-~~~d~~I~iwdi~g~~i~~~-~~~~~i~~i~~s~~pdg~ 479 (556)
.+.....................+++.++|+..++..... ....+.+..++.+++.+..+ ..-...+.++|+ +++
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s--~dg- 188 (319)
T d2dg1a1 112 ATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALS--TDE- 188 (319)
T ss_dssp ECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEEC--TTS-
T ss_pred EcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeec--ccc-
Confidence 5655544444333201034578899999998666543110 00234566666666544443 333566889999 888
Q ss_pred cceE-EEEEeCCCeEEEEeCCC-CeEE----EEe--cCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcC
Q psy10778 480 SQNV-IVTGHSDGTIQLWSGYK-LAHL----LTL--NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTP 548 (556)
Q Consensus 480 ~~~~-l~tg~~dg~I~iwd~~~-~~~~----~~~--~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~ 548 (556)
+. .++-+..+.|+.|++.. +... ... ..........|++.++|++.++....|.|.+++- +++.+.
T Consensus 189 --~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~Va~~~~g~V~~~~p-~G~~l~ 262 (319)
T d2dg1a1 189 --KVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLYVAMYGQGRVLVFNK-RGYPIG 262 (319)
T ss_dssp --SEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEEEEEETTTEEEEECT-TSCEEE
T ss_pred --ceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEEEEEcCCCEEEEECC-CCcEEE
Confidence 54 46666788999998753 2111 111 1022234678999999998888888999999995 455443
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.36 E-value=6.4e-05 Score=72.42 Aligned_cols=217 Identities=7% Similarity=-0.039 Sum_probs=131.7
Q ss_pred CceEEEEEcCCCCEEEEEeC-------CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCC
Q psy10778 325 ATIATATTAPDCHTLWLGLT-------SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDG 397 (556)
Q Consensus 325 ~~V~~i~~s~dg~~l~tgs~-------Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg 397 (556)
...-.++|.++|++.++... +|+|..|+..++.. ... .........+.-..+++.++++.++.+...+
T Consensus 18 ~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~--~~~---~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~ 92 (314)
T d1pjxa_ 18 PGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKK--TVI---CKPEVNGYGGIPAGCQCDRDANQLFVADMRL 92 (314)
T ss_dssp TTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCE--EEE---ECCEETTEECCEEEEEECSSSSEEEEEETTT
T ss_pred CCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcE--EEE---ECCccccCCCcceeEEEeCCCCEEEEEECCC
Confidence 34567889999987776432 35566666554310 000 0000111122356899999999888777777
Q ss_pred cEEEEeCCCCeEEEEeCCCCCC---CCeeEEEEeCCCCeEEEEeecC----------cCCCCeEEEEEeCCcEEEEeecC
Q psy10778 398 TCLLWDINTIGYIREIPCVDPN---TPVSHVTMSETNGEIASVLQTT----------KTGGSILRLHTINAQLITSLASE 464 (556)
Q Consensus 398 ~I~iwdl~~~~~v~~l~~~h~~---~~V~~l~~sp~~~~i~s~s~~~----------~~~d~~I~iwdi~g~~i~~~~~~ 464 (556)
.+...|...... ..+...... ...+.++++++|...++-.... ....+.|..++.+|+.......-
T Consensus 93 ~i~~~~~~g~~~-~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~dg~~~~~~~~~ 171 (314)
T d1pjxa_ 93 GLLVVQTDGTFE-EIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTDGQMIQVDTAF 171 (314)
T ss_dssp EEEEEETTSCEE-ECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTTSCEEEEEEEE
T ss_pred eEEEEeCCCcEE-EEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeecCceeEeeCCc
Confidence 788888775432 222110101 1357799999988777643211 11245676677777766555544
Q ss_pred CCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEE------EEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEE
Q psy10778 465 LRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHL------LTLNTNVALPVIAVTYSCDSQHLYASNTEGLVII 538 (556)
Q Consensus 465 ~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~------~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~v 538 (556)
...+.++|++..++....++++.+..+.|..||+.....+ ..+..........+++..+|++.++....+.|.+
T Consensus 172 ~~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~ 251 (314)
T d1pjxa_ 172 QFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEV 251 (314)
T ss_dssp SSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEE
T ss_pred ceeeeeEECCCCCcceeEEEEEeecccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEE
Confidence 5668899994433321135556677889999887533222 2222122344678999999998888888899999
Q ss_pred EEcCCCCCc
Q psy10778 539 WESSSHNRT 547 (556)
Q Consensus 539 wdl~~~~~~ 547 (556)
||.+.+...
T Consensus 252 ~dp~~g~~~ 260 (314)
T d1pjxa_ 252 FGPDGGQPK 260 (314)
T ss_dssp ECTTCBSCS
T ss_pred EeCCCCEEE
Confidence 998765543
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.35 E-value=4.2e-05 Score=75.41 Aligned_cols=205 Identities=9% Similarity=0.013 Sum_probs=121.5
Q ss_pred CCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEE--EEEc-CCCc
Q psy10778 322 PLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVA--VSSS-EDGT 398 (556)
Q Consensus 322 ~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l--~sgs-~Dg~ 398 (556)
.....+.-++++++++.|+++.. +.+..|.+..... .. .... .........++++++++.+ +++. ..++
T Consensus 37 ~~~~~~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~---~~---~~~~-~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~ 108 (365)
T d1jofa_ 37 PQDEPISWMTFDHERKNIYGAAM-KKWSSFAVKSPTE---IV---HEAS-HPIGGHPRANDADTNTRAIFLLAAKQPPYA 108 (365)
T ss_dssp CTTCCCSEEEECTTSSEEEEEEB-TEEEEEEEEETTE---EE---EEEE-EECCSSGGGGCTTSCCEEEEEEECSSTTCC
T ss_pred cCCCCCCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCC---eE---EEee-ecCCCCcEEEEECCCCCEEEEEEecCCCCE
Confidence 34555677999999999988765 6788888875411 00 0000 1112233456667777633 2221 2344
Q ss_pred EEEEeCCC-------------C---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC--CcEEEE
Q psy10778 399 CLLWDINT-------------I---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN--AQLITS 460 (556)
Q Consensus 399 I~iwdl~~-------------~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~--g~~i~~ 460 (556)
+..+.+.. + .......... ...+.+++++|+|++++++.. ....|.+|+.+ +.+...
T Consensus 109 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~-~~h~h~v~~sPdG~~l~v~d~----g~d~v~~~~~~~~g~~~~~ 183 (365)
T d1jofa_ 109 VYANPFYKFAGYGNVFSVSETGKLEKNVQNYEYQE-NTGIHGMVFDPTETYLYSADL----TANKLWTHRKLASGEVELV 183 (365)
T ss_dssp EEEEEESSSCCEEEEEEECTTCCEEEEEEEEECCT-TCCEEEEEECTTSSEEEEEET----TTTEEEEEEECTTSCEEEE
T ss_pred EEEeEccCCCCcceeEeeeecceecCcccCcccCC-CCcceEEEECCCCCEEEEeeC----CCCEEEEEEccCCCceeec
Confidence 44443221 1 1111111101 345789999999999988863 45688898875 443322
Q ss_pred --e---ecCCCeEEEEEeeCCCCCcceEE-EEEeCCCeEEEEeCCCCe--EEEE---ecC-------------CCCCCeE
Q psy10778 461 --L---ASELRITSVTFSNAPEGVSQNVI-VTGHSDGTIQLWSGYKLA--HLLT---LNT-------------NVALPVI 516 (556)
Q Consensus 461 --~---~~~~~i~~i~~s~~pdg~~~~~l-~tg~~dg~I~iwd~~~~~--~~~~---~~~-------------~h~~~V~ 516 (556)
. ........++|+ |++ +++ ++...+++|.+|++...+ .+.. ... .+.....
T Consensus 184 ~~~~~~~~g~gPr~i~f~--pdg---~~~yv~~e~~~~V~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 258 (365)
T d1jofa_ 184 GSVDAPDPGDHPRWVAMH--PTG---NYLYALMEAGNRICEYVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRAD 258 (365)
T ss_dssp EEEECSSTTCCEEEEEEC--TTS---SEEEEEETTTTEEEEEEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEE
T ss_pred cceeecCCCCceEEEEEC--CCC---ceEEEeccCCCEEEEEEecCCCceEEEEeeeeccccccccccccccccccCCcc
Confidence 2 134678999999 898 665 455578899999986543 2221 110 1112356
Q ss_pred EEEEecCCCEEEEEcC------CCcEEEEEcCCC
Q psy10778 517 AVTYSCDSQHLYASNT------EGLVIIWESSSH 544 (556)
Q Consensus 517 ~l~~s~dg~~l~sgs~------Dg~V~vwdl~~~ 544 (556)
.+.++|||++|+++.. .+.|..|++...
T Consensus 259 ~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~ 292 (365)
T d1jofa_ 259 VCALTFSGKYMFASSRANKFELQGYIAGFKLRDC 292 (365)
T ss_dssp EEEECTTSSEEEEEEEESSTTSCCEEEEEEECTT
T ss_pred ceEECCCCCEEEEEcccCCCccceEEEEEEecCC
Confidence 7899999999988743 234777777653
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.31 E-value=0.00035 Score=64.53 Aligned_cols=196 Identities=14% Similarity=0.120 Sum_probs=122.0
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
..+.+.+..++...... .+........|+|+|+.++.... ++...++...... ................
T Consensus 63 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~spdg~~i~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~ 132 (269)
T d2hqsa1 63 SALVIQTLANGAVRQVA--SFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLAS--------GQIRQVTDGRSNNTEP 132 (269)
T ss_dssp CEEEEEETTTCCEEEEE--CCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTT--------CCEEECCCCSSCEEEE
T ss_pred cceeeeecccCceeEEe--eeecccccceecCCCCeeeEeeecCCccceeeccccc--------ccceeeeecccccccc
Confidence 34666666655443333 46778889999999999887653 3444444443321 1122333444555566
Q ss_pred EEccCCCEE-EEEcCCCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCe--EEEEEeCCc
Q psy10778 382 YLCAGFSVA-VSSSEDGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSI--LRLHTINAQ 456 (556)
Q Consensus 382 ~~s~~~~~l-~sgs~Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~--I~iwdi~g~ 456 (556)
.+++++..+ ++...+|. |.+.++..+...... . . ........|+|++..++..+. ..+. +.+.+..+.
T Consensus 133 ~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~-~-~-~~~~~~~~~spdg~~~~~~~~----~~~~~~i~~~~~~~~ 205 (269)
T d2hqsa1 133 TWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRIT-W-E-GSQNQDADVSSDGKFMVMVSS----NGGQQHIAKQDLATG 205 (269)
T ss_dssp EECTTSSEEEEEECTTSSCEEEEEETTSSCCEECC-C-S-SSEEEEEEECTTSSEEEEEEE----CSSCEEEEEEETTTC
T ss_pred ccccccccceecccccCCceEeeeecccccceeee-c-c-cccccccccccccceeEEEee----cCCceeeeEeecccc
Confidence 677777644 44445554 555566655443333 3 3 567788899999999998875 3344 444455555
Q ss_pred EEEEeecCCCeEEEEEeeCCCCCcceEEEEEeC---CCeEEEEeCCCCeEEEEecCCCCCCeEEEEEec
Q psy10778 457 LITSLASELRITSVTFSNAPEGVSQNVIVTGHS---DGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSC 522 (556)
Q Consensus 457 ~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~---dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~ 522 (556)
...............|+ ||| +.|+..+. ...|+++++..+. ...+. ...+.+...+|||
T Consensus 206 ~~~~~~~~~~~~~p~~S--PDG---~~i~f~s~~~~~~~l~~~~~dg~~-~~~lt-~~~g~~~~p~WSP 267 (269)
T d2hqsa1 206 GVQVLSSTFLDETPSLA--PNG---TMVIYSSSQGMGSVLNLVSTDGRF-KARLP-ATDGQVKFPAWSP 267 (269)
T ss_dssp CEEECCCSSSCEEEEEC--TTS---SEEEEEEEETTEEEEEEEETTSCC-EEECC-CSSSEEEEEEECC
T ss_pred cceEeecCccccceEEC--CCC---CEEEEEEcCCCCcEEEEEECCCCC-EEEEe-CCCCcEEeEEeCC
Confidence 55555566677888999 999 66654332 3468889986555 45555 3466788889998
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.28 E-value=8.6e-05 Score=73.09 Aligned_cols=159 Identities=11% Similarity=0.057 Sum_probs=102.8
Q ss_pred ccEEEEEEccCCCEEEEEcC-CCcEEEEeCCC-CeE--EEEeCC-CCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSSE-DGTCLLWDINT-IGY--IREIPC-VDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRL 450 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~-Dg~I~iwdl~~-~~~--v~~l~~-~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~i 450 (556)
..+.++.|+|+|+++++++. ...|.+|+... +.. ...... .. ....+.++|+|+++++.+... .+++|.+
T Consensus 145 ~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~-g~gPr~i~f~pdg~~~yv~~e----~~~~V~v 219 (365)
T d1jofa_ 145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDP-GDHPRWVAMHPTGNYLYALME----AGNRICE 219 (365)
T ss_dssp CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSST-TCCEEEEEECTTSSEEEEEET----TTTEEEE
T ss_pred CcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCC-CCceEEEEECCCCceEEEecc----CCCEEEE
Confidence 34789999999997777653 45788887653 222 222211 02 567899999999998877764 6889999
Q ss_pred EEeCC---cEEEEe---ec---------------CCCeEEEEEeeCCCCCcceEEEEEeC------CCeEEEEeCCCCeE
Q psy10778 451 HTINA---QLITSL---AS---------------ELRITSVTFSNAPEGVSQNVIVTGHS------DGTIQLWSGYKLAH 503 (556)
Q Consensus 451 wdi~g---~~i~~~---~~---------------~~~i~~i~~s~~pdg~~~~~l~tg~~------dg~I~iwd~~~~~~ 503 (556)
|+++. ..+... .. ......+.++ |+| ++|+++.. .+.|..|++.....
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s--pdG---~~lyvsnr~~~~~~~~~i~~~~~~~~g~ 294 (365)
T d1jofa_ 220 YVIDPATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALT--FSG---KYMFASSRANKFELQGYIAGFKLRDCGS 294 (365)
T ss_dssp EEECTTTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEEC--TTS---SEEEEEEEESSTTSCCEEEEEEECTTSC
T ss_pred EEecCCCceEEEEeeeeccccccccccccccccccCCccceEEC--CCC---CEEEEEcccCCCccceEEEEEEecCCCc
Confidence 99962 222221 10 1134578888 999 77777642 23477777654322
Q ss_pred EE---Ee-cC-CCCCCeEEEEEec-CCCEEEEEc-CCCcEEEEEcCCC
Q psy10778 504 LL---TL-NT-NVALPVIAVTYSC-DSQHLYASN-TEGLVIIWESSSH 544 (556)
Q Consensus 504 ~~---~~-~~-~h~~~V~~l~~s~-dg~~l~sgs-~Dg~V~vwdl~~~ 544 (556)
+. .+ .. .......+++++| +|++|+++. .++.|.+|++...
T Consensus 295 ~~~~~~~~~~~~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~ 342 (365)
T d1jofa_ 295 IEKQLFLSPTPTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE 342 (365)
T ss_dssp EEEEEEEEECSSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred eeeEeEeeEEEcCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence 21 11 10 2335567899998 789877664 6789999998654
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.27 E-value=2e-05 Score=80.58 Aligned_cols=214 Identities=12% Similarity=-0.011 Sum_probs=131.5
Q ss_pred cCCCeEEEEeCCCCCCcceEcCC--CCCceEEEEEcCCCCEEEEEe---------CCCcEEEEEeeeccCcccccccCCC
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPP--LGATIATATTAPDCHTLWLGL---------TSGNILVYEYELNASTNKIEFCKPP 368 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~--h~~~V~~i~~s~dg~~l~tgs---------~Dg~I~vwd~~~~~~~~~~~~~~~~ 368 (556)
..||.|.+|+.++++....+... ..-.+....++||+++++.+. ..+.+.++|+.++.. +.+
T Consensus 34 ~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~-------~~l 106 (465)
T d1xfda1 34 EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDP-------QSL 106 (465)
T ss_dssp CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCC-------EEC
T ss_pred eCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCce-------eec
Confidence 46788999999887665544432 223567788999999988764 346788889876511 111
Q ss_pred eEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCC-----------------eeEEEEeCCC
Q psy10778 369 TILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTP-----------------VSHVTMSETN 431 (556)
Q Consensus 369 ~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~-----------------V~~l~~sp~~ 431 (556)
.........+....|||+|+.+|-.. ++.|.+.+...+..++...... ... -..+.|||||
T Consensus 107 ~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~-~~~i~nG~~d~vyeee~~~~~~a~~WSPDg 184 (465)
T d1xfda1 107 DPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGK-EGVIYNGLSDWLYEEEILKTHIAHWWSPDG 184 (465)
T ss_dssp CCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCB-TTTEEEEECCHHHHHTTSSSSEEEEECTTS
T ss_pred cCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccC-cceeeccccchhhhhhhccccceEEECCCC
Confidence 11222334556688999999888765 6778888888776666554301 111 2478899999
Q ss_pred CeEEEEeecC---------------------------cC--CCCeEEEEEeCCcEE--EEee------cCCCeEEEEEee
Q psy10778 432 GEIASVLQTT---------------------------KT--GGSILRLHTINAQLI--TSLA------SELRITSVTFSN 474 (556)
Q Consensus 432 ~~i~s~s~~~---------------------------~~--~d~~I~iwdi~g~~i--~~~~------~~~~i~~i~~s~ 474 (556)
+.||....+. +. ....+.++|+.+... .... ....+..+.|+
T Consensus 185 k~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~- 263 (465)
T d1xfda1 185 TRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWA- 263 (465)
T ss_dssp SEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEES-
T ss_pred CeEEEEEecccccceeecccccccccceeeeeeccccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEc-
Confidence 9999875432 00 112455666653211 1111 11246788998
Q ss_pred CCCCCcceEEEEEeC-C---CeEEEEeCCCCeEEEEecCCCCCCe----EEEEEecCCCEE
Q psy10778 475 APEGVSQNVIVTGHS-D---GTIQLWSGYKLAHLLTLNTNVALPV----IAVTYSCDSQHL 527 (556)
Q Consensus 475 ~pdg~~~~~l~tg~~-d---g~I~iwd~~~~~~~~~~~~~h~~~V----~~l~~s~dg~~l 527 (556)
+++ ++++.... + ..|.++|..+++....+.......| ....|++||+.+
T Consensus 264 -~d~---~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e~~~~wv~~~~~~p~~~~dg~~~ 320 (465)
T d1xfda1 264 -TST---KVAVTWLNRAQNVSILTLCDATTGVCTKKHEDESEAWLHRQNEEPVFSKDGRKF 320 (465)
T ss_dssp -SSS---EEEEEEEETTSCEEEEEEEETTTCCEEEEEEEECSSCCCCCCCCCEECTTSCSE
T ss_pred -CCC---eEEEEEEccccccceEEEEcCCCCcEEEEEEEcCCceEeccCCceeEccCCCee
Confidence 787 66655432 2 3588889988876655432222222 345789999743
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=98.24 E-value=0.00038 Score=66.14 Aligned_cols=201 Identities=9% Similarity=0.024 Sum_probs=132.5
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeC-----CC
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLG-----HS 375 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~-----h~ 375 (556)
..+.|.-|+.++++.. .+. ....+.++++.++|+++++ +.+ .+.++|..++. ...+.. ..
T Consensus 38 ~~~~I~r~d~~~g~~~-~~~--~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg~----------~~~l~~~~~~~~~ 102 (295)
T d2ghsa1 38 LERELHELHLASGRKT-VHA--LPFMGSALAKISDSKQLIA-SDD-GLFLRDTATGV----------LTLHAELESDLPG 102 (295)
T ss_dssp GGTEEEEEETTTTEEE-EEE--CSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTCC----------EEEEECSSTTCTT
T ss_pred CCCEEEEEECCCCeEE-EEE--CCCCcEEEEEecCCCEEEE-EeC-ccEEeecccce----------eeEEeeeecCCCc
Confidence 4466777777665432 222 2346789999888866655 554 47777776541 112211 12
Q ss_pred ccEEEEEEccCCCEEEEEcC----CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEE
Q psy10778 376 ACVTDLYLCAGFSVAVSSSE----DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLH 451 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~----Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iw 451 (556)
..++.+.+.++|++.++... .+.-.+|.+..++....... -.....++++++++.+..+.. ..+.|..|
T Consensus 103 ~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~---~~~~Ng~~~s~d~~~l~~~dt----~~~~I~~~ 175 (295)
T d2ghsa1 103 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFAD---ISIPNSICFSPDGTTGYFVDT----KVNRLMRV 175 (295)
T ss_dssp EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEE---ESSEEEEEECTTSCEEEEEET----TTCEEEEE
T ss_pred ccceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeec---cCCcceeeecCCCceEEEeec----ccceeeEe
Confidence 35789999999997666432 23456676666665554443 355688999999987766643 67889999
Q ss_pred EeCC-------cEEEEee---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEe
Q psy10778 452 TINA-------QLITSLA---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 452 di~g-------~~i~~~~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s 521 (556)
+++. +...... .......+++. .+| ++.++....|.|..||. +++.+..+.. ....+++++|-
T Consensus 176 ~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD--~~G---nlWva~~~~g~V~~~dp-~G~~~~~i~l-P~~~~T~~~FG 248 (295)
T d2ghsa1 176 PLDARTGLPTGKAEVFIDSTGIKGGMDGSVCD--AEG---HIWNARWGEGAVDRYDT-DGNHIARYEV-PGKQTTCPAFI 248 (295)
T ss_dssp EBCTTTCCBSSCCEEEEECTTSSSEEEEEEEC--TTS---CEEEEEETTTEEEEECT-TCCEEEEEEC-SCSBEEEEEEE
T ss_pred eecccccccccceEEEeccCcccccccceEEc--CCC---CEEeeeeCCCceEEecC-CCcEeeEecC-CCCceEEEEEe
Confidence 8752 1111111 24567888888 888 88888778899999994 7899988873 34579999996
Q ss_pred -cCCCEEEEE
Q psy10778 522 -CDSQHLYAS 530 (556)
Q Consensus 522 -~dg~~l~sg 530 (556)
+|.+.|+..
T Consensus 249 G~d~~~LyvT 258 (295)
T d2ghsa1 249 GPDASRLLVT 258 (295)
T ss_dssp STTSCEEEEE
T ss_pred CCCCCEEEEE
Confidence 566666543
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.99 E-value=0.00026 Score=65.58 Aligned_cols=95 Identities=5% Similarity=-0.029 Sum_probs=65.2
Q ss_pred EcCC--CCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcC-C-----CcEEEEe
Q psy10778 332 TAPD--CHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSE-D-----GTCLLWD 403 (556)
Q Consensus 332 ~s~d--g~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~-D-----g~I~iwd 403 (556)
.+|| |+.+|..+ +|.|.+.++..+ ..+.|..+.+.+...+|||||+.|+.... + ..|.+.+
T Consensus 6 ~sPdi~G~~v~f~~-~~dl~~~d~~~g----------~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~ 74 (281)
T d1k32a2 6 LNPDIHGDRIIFVC-CDDLWEHDLKSG----------STRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYN 74 (281)
T ss_dssp EEEEEETTEEEEEE-TTEEEEEETTTC----------CEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEE
T ss_pred cCCCCCCCEEEEEe-CCcEEEEECCCC----------CEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEE
Confidence 5688 99888765 466777777654 23567778888999999999998875432 2 2477778
Q ss_pred CCCCeEEEEeCCC-----CCCCCeeEEEEeCCCCeEEEEe
Q psy10778 404 INTIGYIREIPCV-----DPNTPVSHVTMSETNGEIASVL 438 (556)
Q Consensus 404 l~~~~~v~~l~~~-----h~~~~V~~l~~sp~~~~i~s~s 438 (556)
...++..+..... . .......+|+|+++.|+...
T Consensus 75 ~~~g~~~~lt~~~~~~~~~-~~~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 75 GENGEIKRITYFSGKSTGR-RMFTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp TTTTEEEECCCCCEEEETT-EECSEEEEECTTCCEEEEEC
T ss_pred ecCCceEEeeecCCCccCc-cccccccccCCCCCEEEEEE
Confidence 8777654432220 1 13456788999999988764
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.92 E-value=0.0041 Score=58.62 Aligned_cols=199 Identities=12% Similarity=0.066 Sum_probs=124.3
Q ss_pred EEEEcCCCCEE-EEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10778 329 TATTAPDCHTL-WLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWDINTI 407 (556)
Q Consensus 329 ~i~~s~dg~~l-~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~~ 407 (556)
+..|++....| .+=-..+.|..||..++. .........+.++++.+++.++++ +.+ -+.++|..++
T Consensus 22 gp~wd~~~~~l~wvDi~~~~I~r~d~~~g~-----------~~~~~~~~~~~~i~~~~dg~l~va-~~~-gl~~~d~~tg 88 (295)
T d2ghsa1 22 GPTFDPASGTAWWFNILERELHELHLASGR-----------KTVHALPFMGSALAKISDSKQLIA-SDD-GLFLRDTATG 88 (295)
T ss_dssp EEEEETTTTEEEEEEGGGTEEEEEETTTTE-----------EEEEECSSCEEEEEEEETTEEEEE-ETT-EEEEEETTTC
T ss_pred CCeEECCCCEEEEEECCCCEEEEEECCCCe-----------EEEEECCCCcEEEEEecCCCEEEE-EeC-ccEEeecccc
Confidence 34566543433 343356777777766541 122223456889999999877765 445 4889999988
Q ss_pred eEEEEeCCCC--CCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEE
Q psy10778 408 GYIREIPCVD--PNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVI 484 (556)
Q Consensus 408 ~~v~~l~~~h--~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l 484 (556)
+......... ....+..+.+.|+|...++..... ...+.-.+|.+. ++.......-...+.++|+ +++. .++
T Consensus 89 ~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~-~~~~~g~l~~~~~g~~~~~~~~~~~~Ng~~~s--~d~~--~l~ 163 (295)
T d2ghsa1 89 VLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRK-AETGAGSIYHVAKGKVTKLFADISIPNSICFS--PDGT--TGY 163 (295)
T ss_dssp CEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETT-CCTTCEEEEEEETTEEEEEEEEESSEEEEEEC--TTSC--EEE
T ss_pred eeeEEeeeecCCCcccceeeEECCCCCEEEEecccc-ccccceeEeeecCCcEEEEeeccCCcceeeec--CCCc--eEE
Confidence 7544332201 023578899999998766654211 123345566664 5554444444566889999 7772 355
Q ss_pred EEEeCCCeEEEEeCCC------Ce--EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 485 VTGHSDGTIQLWSGYK------LA--HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 485 ~tg~~dg~I~iwd~~~------~~--~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
++.+..+.|..+++.. ++ ...... +.......+++..+|.+.++.-..|.|..||. +++.+
T Consensus 164 ~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~-~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~ 232 (295)
T d2ghsa1 164 FVDTKVNRLMRVPLDARTGLPTGKAEVFIDST-GIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHI 232 (295)
T ss_dssp EEETTTCEEEEEEBCTTTCCBSSCCEEEEECT-TSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEE
T ss_pred EeecccceeeEeeecccccccccceEEEeccC-cccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEe
Confidence 6667788999887632 11 122222 34566889999999998887777889999995 44443
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.58 E-value=0.0046 Score=62.40 Aligned_cols=170 Identities=12% Similarity=0.110 Sum_probs=94.2
Q ss_pred cEEEEEEccCCCEEEEEcC-C---CcEEEEeCCCCeEEEEeCCCCCCCCe----eEEEEeCCCCeEEEEeecCcCCCCeE
Q psy10778 377 CVTDLYLCAGFSVAVSSSE-D---GTCLLWDINTIGYIREIPCVDPNTPV----SHVTMSETNGEIASVLQTTKTGGSIL 448 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs~-D---g~I~iwdl~~~~~v~~l~~~h~~~~V----~~l~~sp~~~~i~s~s~~~~~~d~~I 448 (556)
-+..+.|++++++++.... + ..+.++|..+++....+.. ...+.| ....|+++|+.++.......+.-+.+
T Consensus 256 y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~~~e-~~~~wv~~~~~~p~~~~dg~~~~fi~~se~~g~~~l 334 (465)
T d1xfda1 256 YITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKKHED-ESEAWLHRQNEEPVFSKDGRKFFFIRAIPQGGRGKF 334 (465)
T ss_dssp EEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEEEEE-ECSSCCCCCCCCCEECTTSCSEEEEEEECCSSSSCE
T ss_pred eeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEEEEE-cCCceEeccCCceeEccCCCeeEEEEeeeecccCce
Confidence 4678899999886665432 2 3588899999876554432 102222 34678999987543311111122345
Q ss_pred EEEEe-------CCcEEEEee-cCCCeEEE-EEeeCCCCCcceEEEEEeCCC--eEEEE--eCCCCeEEEEec--CCCCC
Q psy10778 449 RLHTI-------NAQLITSLA-SELRITSV-TFSNAPEGVSQNVIVTGHSDG--TIQLW--SGYKLAHLLTLN--TNVAL 513 (556)
Q Consensus 449 ~iwdi-------~g~~i~~~~-~~~~i~~i-~~s~~pdg~~~~~l~tg~~dg--~I~iw--d~~~~~~~~~~~--~~h~~ 513 (556)
+.+++ .++.+..+. +.-.|..+ +|+ .++. .+..++..++ .-++| ++..+.....+. .....
T Consensus 335 y~~~~~~~~~~~~~~~~~~LT~G~w~V~~i~~~d--~~~~--~vyF~a~~~~p~~~hly~v~l~g~~~~~~lt~~~~~~~ 410 (465)
T d1xfda1 335 YHITVSSSQPNSSNDNIQSITSGDWDVTKILAYD--EKGN--KIYFLSTEDLPRRRQLYSANTVGNFNRQCLSCDLVENC 410 (465)
T ss_dssp EEEEEECSSCCSSSCCCCBSCCSSSCEEEEEEEE--TTTT--EEEEEESSSCTTCCEEEEECSSTTCCCBCSSTTSSSSC
T ss_pred EEEEeccccccCCCceeEEeccCCceEEEEEEEc--CCCC--EEEEEEeCCCCCceEEEEEECCCCCcceeeccccCCCC
Confidence 54443 233333333 23345554 577 5552 4445565432 22344 443332222221 12345
Q ss_pred CeEEEEEecCCCEEEEEcCC---CcEEEEEcCCCCCcCeee
Q psy10778 514 PVIAVTYSCDSQHLYASNTE---GLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 514 ~V~~l~~s~dg~~l~sgs~D---g~V~vwdl~~~~~~~~~~ 551 (556)
...++.|||++++++...+. -.+.+++..+++.+..+.
T Consensus 411 ~~~~~~~S~~~~y~v~~~s~~~~P~~~~~~~~~~~~~~~Le 451 (465)
T d1xfda1 411 TYFSASFSHSMDFFLLKCEGPGVPMVTVHNTTDKKKMFDLE 451 (465)
T ss_dssp CCCEEEECTTSSEEEEECCSSSSCCEEEEETTTCCEEEEEE
T ss_pred CEEEEEECCCCCEEEEEeecCCCCeEEEEECCCCCEEEEEc
Confidence 67799999999998855543 467888888777665554
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.57 E-value=0.0025 Score=58.56 Aligned_cols=91 Identities=12% Similarity=0.015 Sum_probs=53.1
Q ss_pred CCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeC-CC---cEEEEEeeeccCcccccccCCCeEeeCCCc
Q psy10778 301 CDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLT-SG---NILVYEYELNASTNKIEFCKPPTILLGHSA 376 (556)
Q Consensus 301 ~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~-Dg---~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~ 376 (556)
.+|.|.+.++.+++..++. .+.+.+...+|||||+.||.... ++ ...+|-+.........+. ...........
T Consensus 19 ~~~dl~~~d~~~g~~~~Lt--~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~lt-~~~~~~~~~~~ 95 (281)
T d1k32a2 19 CCDDLWEHDLKSGSTRKIV--SNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRIT-YFSGKSTGRRM 95 (281)
T ss_dssp ETTEEEEEETTTCCEEEEE--CSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEECC-CCCEEEETTEE
T ss_pred eCCcEEEEECCCCCEEEEe--cCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEee-ecCCCccCccc
Confidence 3567888899988765543 46677889999999999986542 22 233444433211111000 01111222334
Q ss_pred cEEEEEEccCCCEEEEEc
Q psy10778 377 CVTDLYLCAGFSVAVSSS 394 (556)
Q Consensus 377 ~V~~l~~s~~~~~l~sgs 394 (556)
......|+|+|+.|+...
T Consensus 96 ~~~~~~~spdg~~l~~~~ 113 (281)
T d1k32a2 96 FTDVAGFDPDGNLIISTD 113 (281)
T ss_dssp CSEEEEECTTCCEEEEEC
T ss_pred cccccccCCCCCEEEEEE
Confidence 556788999999877643
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.40 E-value=0.048 Score=50.06 Aligned_cols=232 Identities=9% Similarity=-0.026 Sum_probs=142.3
Q ss_pred CeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 303 NLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 303 g~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
..|+-.++.+......+ .....+.+++|.+.++.|+-.. .++.|...+++...... .....+......+.++
T Consensus 10 ~~I~~~~l~~~~~~~~~--~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~-----~~~~~~~~~~~~p~gl 82 (266)
T d1ijqa1 10 HEVRKMTLDRSEYTSLI--PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVS-----SYDTVISRDIQAPDGL 82 (266)
T ss_dssp SSEEEEETTSCCCEEEE--CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC-------------CEEEECSSCSCCCEE
T ss_pred CeEEEEECCCCcceeee--CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCc-----ceEEEEeCCCCCcceE
Confidence 35777888765554444 3456788999998877777664 45556555554321100 1112233334557788
Q ss_pred EEccCCCEE-EEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE
Q psy10778 382 YLCAGFSVA-VSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460 (556)
Q Consensus 382 ~~s~~~~~l-~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~ 460 (556)
++...+..| ++-...+.|.+.++........+.. . ......++++|..+++...... ..+.|.-.+++|.....
T Consensus 83 AvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~-~-~~~P~~l~vd~~~g~ly~~~~~---~~~~I~r~~~dGs~~~~ 157 (266)
T d1ijqa1 83 AVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRE-N-GSKPRAIVVDPVHGFMYWTDWG---TPAKIKKGGLNGVDIYS 157 (266)
T ss_dssp EEETTTTEEEEEETTTTEEEEEETTSSSEEEEEEC-T-TCCEEEEEEETTTTEEEEEECS---SSCEEEEEETTSCCEEE
T ss_pred EEeeccceEEEEecCCCEEEeEecCCceEEEEEcC-C-CCCcceEEEEcccCeEEEeccC---CCcceeEeccCCCceec
Confidence 888755544 4555678899999986554444444 3 5678999999988877766411 34567777777765544
Q ss_pred ee--cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC-CCCCCeEEEEEecCCCEEEEEcCCCcEE
Q psy10778 461 LA--SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT-NVALPVIAVTYSCDSQHLYASNTEGLVI 537 (556)
Q Consensus 461 ~~--~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~-~h~~~V~~l~~s~dg~~l~sgs~Dg~V~ 537 (556)
+- .-....++++. +.+. ++..+-...+.|...++........... .......++++. ++.+..+-..++.|.
T Consensus 158 l~~~~~~~p~gl~iD--~~~~--~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~ 232 (266)
T d1ijqa1 158 LVTENIQWPNGITLD--LLSG--RLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIF 232 (266)
T ss_dssp EECSSCSCEEEEEEE--TTTT--EEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEE
T ss_pred ccccccceeeEEEee--cccc--EEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEE
Confidence 42 23567899998 6551 4555656778999989854332222221 223456788877 344555555778898
Q ss_pred EEEcCCCCCcCeee
Q psy10778 538 IWESSSHNRTPKFL 551 (556)
Q Consensus 538 vwdl~~~~~~~~~~ 551 (556)
..+..++.....+.
T Consensus 233 ~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 233 SANRLTGSDVNLLA 246 (266)
T ss_dssp EEETTTCCCCEEEE
T ss_pred EEECCCCcceEEEE
Confidence 88887766554443
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.27 E-value=0.067 Score=48.96 Aligned_cols=202 Identities=8% Similarity=-0.111 Sum_probs=128.4
Q ss_pred cCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccE
Q psy10778 300 ECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACV 378 (556)
Q Consensus 300 s~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V 378 (556)
..++.|+..++.+......+. .....+.++++..-++.|+.+ ...+.|.+.+++.. .....+.......
T Consensus 55 ~~~~~I~~~~l~g~~~~~v~~-~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~---------~~~~l~~~~l~~p 124 (263)
T d1npea_ 55 ISEPSIGRASLHGGEPTTIIR-QDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGT---------QRRVLFDTGLVNP 124 (263)
T ss_dssp TTTTEEEEEESSSCCCEEEEC-TTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSC---------SCEEEECSSCSSE
T ss_pred CCCCeEEEEEcccCCcEEEEE-eccccccEEEEeccCCeEEEeccCCCEEEEEecCCc---------eEEEEecccccCC
Confidence 556778888877654444443 334568899998766666544 45678888887643 1112223334678
Q ss_pred EEEEEccCCCEEEEEcC-CCc--EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC
Q psy10778 379 TDLYLCAGFSVAVSSSE-DGT--CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA 455 (556)
Q Consensus 379 ~~l~~s~~~~~l~sgs~-Dg~--I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g 455 (556)
..+++.|...++.-... .+. |..-++........... . -.....+++++.++.|..+.. ..+.|...+++|
T Consensus 125 ~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~-~-~~~P~glaiD~~~~~lYw~d~----~~~~I~~~~~~g 198 (263)
T d1npea_ 125 RGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQD-N-LGLPNGLTFDAFSSQLCWVDA----GTHRAECLNPAQ 198 (263)
T ss_dssp EEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECT-T-CSCEEEEEEETTTTEEEEEET----TTTEEEEEETTE
T ss_pred cEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeee-c-ccccceEEEeecCcEEEEEeC----CCCEEEEEECCC
Confidence 89999997776654432 233 44445553332233322 2 456789999998888877642 578899999987
Q ss_pred cEEEEe-ecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecC
Q psy10778 456 QLITSL-ASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCD 523 (556)
Q Consensus 456 ~~i~~~-~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~d 523 (556)
.....+ .......++++. ++ .+..+-...+.|...|..+++.+..+.........+++..++
T Consensus 199 ~~~~~v~~~~~~P~~lav~---~~---~lYwtd~~~~~I~~~~~~~g~~~~~~~~~~~~~~~gi~v~~~ 261 (263)
T d1npea_ 199 PGRRKVLEGLQYPFAVTSY---GK---NLYYTDWKTNSVIAMDLAISKEMDTFHPHKQTRLYGITIALS 261 (263)
T ss_dssp EEEEEEEECCCSEEEEEEE---TT---EEEEEETTTTEEEEEETTTTEEEEEECCSSCCCCCCEEEECS
T ss_pred CCeEEEECCCCCcEEEEEE---CC---EEEEEECCCCEEEEEECCCCccceEECCCCCCCcceEEEeCC
Confidence 655444 333455688887 34 566676678899999999998887775333445556666543
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=97.24 E-value=0.0024 Score=62.48 Aligned_cols=216 Identities=10% Similarity=0.033 Sum_probs=135.5
Q ss_pred CcceEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcC--CCCEEEEEeCCC------------------cEEEE
Q psy10778 292 GAGMICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAP--DCHTLWLGLTSG------------------NILVY 351 (556)
Q Consensus 292 ~~~~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~--dg~~l~tgs~Dg------------------~I~vw 351 (556)
++.+++....++.|.+.|+++.+...++.......+..++..+ +..+++.++.+. .+.+.
T Consensus 99 GrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~I 178 (459)
T d1fwxa2 99 GRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAV 178 (459)
T ss_dssp EEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEE
T ss_pred eeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEE
Confidence 3447777888999999999988887777766667788777754 556777777632 24445
Q ss_pred EeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC-----------------------------------
Q psy10778 352 EYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED----------------------------------- 396 (556)
Q Consensus 352 d~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D----------------------------------- 396 (556)
|..+. +....+. -......+.++++|+++++.+.+
T Consensus 179 D~~tm---------~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~ 248 (459)
T d1fwxa2 179 DADKW---------EVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDY 248 (459)
T ss_dssp ETTTT---------EEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCS
T ss_pred ecCCc---------eEEEEee-eCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhcCCc
Confidence 54433 1111111 12245578899999988887633
Q ss_pred ---CcEEEEeCCCC---eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-------------CcE
Q psy10778 397 ---GTCLLWDINTI---GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-------------AQL 457 (556)
Q Consensus 397 ---g~I~iwdl~~~---~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-------------g~~ 457 (556)
+-+.+-|.+.. ..++.+.. ......+.++|||+++++++. .+.++.++|++ ...
T Consensus 249 ~eingV~VVD~~~~~~~~v~~yIPV---pKsPHGV~vSPDGKyi~VaGK----Ls~tVSViD~~Ki~~~~~~~~~~~~~~ 321 (459)
T d1fwxa2 249 QELNGVKVVDGRKEASSLFTRYIPI---ANNPHGCNMAPDKKHLCVAGK----LSPTVTVLDVTRFDAVFYENADPRSAV 321 (459)
T ss_dssp EEETTEEEEECSGG--CSSEEEEEE---ESSCCCEEECTTSSEEEEECT----TSSBEEEEEGGGHHHHHHSCC-GGGGE
T ss_pred EEeCCceeecccccCCcceeEEEec---CCCCCceEECCCCCEEEEeCC----cCCcEEEEEehhhhhhhcccCCccccE
Confidence 11334443321 22333433 234567899999999999885 78999999984 113
Q ss_pred EEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCC----------eEEEEecCCCCCCeEEE------EEe
Q psy10778 458 ITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKL----------AHLLTLNTNVALPVIAV------TYS 521 (556)
Q Consensus 458 i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~----------~~~~~~~~~h~~~V~~l------~~s 521 (556)
.......-.....+|+ ..| +...+---|..|.-|++... ..+..+. -|- .+-.+ ...
T Consensus 322 ~~e~elglgPLht~fd--~~g---~aytslfids~v~kw~~~~~~~~~~~~~~~~v~~k~~-v~y-~~gh~~~~~g~t~~ 394 (459)
T d1fwxa2 322 VAEPELGLGPLHTAFD--GRG---NAYTSLFLDSQVVKWNIEDAIRAYAGEKVDPIKDKLD-VHY-QPGHLKTVMGETLD 394 (459)
T ss_dssp EECCBCCSCEEEEEEC--TTS---EEEEEETTTTEEEEEEHHHHHHHHHTCSCCCEEEEEE-CSS-CEEEEEETTTTSTT
T ss_pred EeecccCcCccccccC--CCc---eEEEEeeccceEEEEecchhhhhhccccCCcceeccc-ccc-CCCCCccCcCCcCC
Confidence 3333445566677888 777 66667778999999997322 3444554 221 11111 235
Q ss_pred cCCCEEEEEc
Q psy10778 522 CDSQHLYASN 531 (556)
Q Consensus 522 ~dg~~l~sgs 531 (556)
|+|++|++..
T Consensus 395 ~dgk~l~~~n 404 (459)
T d1fwxa2 395 ATNDWLVCLS 404 (459)
T ss_dssp CCSSEEEEEE
T ss_pred CCCCEEEEec
Confidence 7888888775
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.09 E-value=0.1 Score=47.68 Aligned_cols=206 Identities=9% Similarity=-0.040 Sum_probs=127.7
Q ss_pred CCceEEEEEcCCCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEE-EEcCCCcEEE
Q psy10778 324 GATIATATTAPDCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAV-SSSEDGTCLL 401 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~-sgs~Dg~I~i 401 (556)
...+.++++....+.++-.. .++.|+..+++.. .....+......+.++++..-+..|. +-...+.|.+
T Consensus 35 ~~~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~---------~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~ 105 (263)
T d1npea_ 35 AKVIIGLAFDCVDKVVYWTDISEPSIGRASLHGG---------EPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEV 105 (263)
T ss_dssp EEEEEEEEEETTTTEEEEEETTTTEEEEEESSSC---------CCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred CCcEEEEEEEeCCCEEEEEECCCCeEEEEEcccC---------CcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEE
Confidence 34577889988777776654 5566777776543 12233333445788999987565554 5566789999
Q ss_pred EeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEee--cCCCeEEEEEeeCCCCC
Q psy10778 402 WDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSLA--SELRITSVTFSNAPEGV 479 (556)
Q Consensus 402 wdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~~--~~~~i~~i~~s~~pdg~ 479 (556)
.++........+.. . ...+..++++|..+.+....... ....|.-.+++|.....+. .-....++++. +.+.
T Consensus 106 ~~~dg~~~~~l~~~-~-l~~p~~l~vdp~~g~ly~t~~~~--~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD--~~~~ 179 (263)
T d1npea_ 106 AKMDGTQRRVLFDT-G-LVNPRGIVTDPVRGNLYWTDWNR--DNPKIETSHMDGTNRRILAQDNLGLPNGLTFD--AFSS 179 (263)
T ss_dssp EETTSCSCEEEECS-S-CSSEEEEEEETTTTEEEEEECCS--SSCEEEEEETTSCCCEEEECTTCSCEEEEEEE--TTTT
T ss_pred EecCCceEEEEecc-c-ccCCcEEEEecccCcEEEeecCC--CCcEEEEecCCCCCceeeeeecccccceEEEe--ecCc
Confidence 99875443223333 2 46789999999988887664210 1223555566664333332 33567899998 5551
Q ss_pred cceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCe
Q psy10778 480 SQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 480 ~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~ 549 (556)
++..+-...+.|...++........+. +. ....+|++. ++.+..+-...+.|...|..+++....
T Consensus 180 --~lYw~d~~~~~I~~~~~~g~~~~~v~~-~~-~~P~~lav~-~~~lYwtd~~~~~I~~~~~~~g~~~~~ 244 (263)
T d1npea_ 180 --QLCWVDAGTHRAECLNPAQPGRRKVLE-GL-QYPFAVTSY-GKNLYYTDWKTNSVIAMDLAISKEMDT 244 (263)
T ss_dssp --EEEEEETTTTEEEEEETTEEEEEEEEE-CC-CSEEEEEEE-TTEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred --EEEEEeCCCCEEEEEECCCCCeEEEEC-CC-CCcEEEEEE-CCEEEEEECCCCEEEEEECCCCccceE
Confidence 444555677899999985444333333 32 335688876 344445555778899999887665443
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=96.69 E-value=0.23 Score=50.58 Aligned_cols=154 Identities=12% Similarity=0.137 Sum_probs=98.1
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC-----------------------------------CCeeEEEEeCCCCe
Q psy10778 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPN-----------------------------------TPVSHVTMSETNGE 433 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~-----------------------------------~~V~~l~~sp~~~~ 433 (556)
.++.++++|.+.++|-.+++.+..... .+. ..-...+++|+.+.
T Consensus 316 ~v~~~~k~G~~~~lDr~tG~~i~~~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp~~~~ 394 (560)
T d1kv9a2 316 VLMQAPKNGFFYVLDRTNGKLISAEKF-GKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTGL 394 (560)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEES-SCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTTE
T ss_pred eeeecCccceEEEEecCCCcccccccc-cccccccccChhhccccccccccccccceeeeeccccccccccccccCCCCe
Confidence 677789999999999999988754322 000 00124567777776
Q ss_pred EEEEeecC-------------------------------cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcc
Q psy10778 434 IASVLQTT-------------------------------KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQ 481 (556)
Q Consensus 434 i~s~s~~~-------------------------------~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~ 481 (556)
+....... ....+.|.-+|++ |+.+-.........+-.++ -.+
T Consensus 395 ~yvp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~G~l~A~D~~tGk~~W~~~~~~~~~gg~l~--Tag--- 469 (560)
T d1kv9a2 395 VYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLS--TAG--- 469 (560)
T ss_dssp EEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--ETT---
T ss_pred eecccccccceeeccccccccccccccccCcccccCCCCcccccceEEEeCCCCeEeeeccCCCCCCCceeE--ECC---
Confidence 66554321 0013578888887 8888777655444333333 234
Q ss_pred eEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCC-EEEEEcC--------------------CCcEEEEE
Q psy10778 482 NVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQ-HLYASNT--------------------EGLVIIWE 540 (556)
Q Consensus 482 ~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~-~l~sgs~--------------------Dg~V~vwd 540 (556)
.++.+|+.||.++.+|..+|+.+.++.......-.-+.+..+|+ +|++.+. .+.|.+|.
T Consensus 470 glVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkqyv~v~aG~g~~~~~~~~~~~~~~~~~~g~~l~~F~ 549 (560)
T d1kv9a2 470 NLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQYVAIMAGWGGVATLTGGESMNLPGMKNRSRLLVFA 549 (560)
T ss_dssp TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEEECCCSHHHHHCCGGGGSTTCCCCCEEEEEE
T ss_pred CEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEEEEEEEeCCCcccccccccccccccCCCCCEEEEEE
Confidence 47888999999999999999999998862211111245567885 4443322 24689999
Q ss_pred cCCCCCcC
Q psy10778 541 SSSHNRTP 548 (556)
Q Consensus 541 l~~~~~~~ 548 (556)
|......+
T Consensus 550 L~g~~~~~ 557 (560)
T d1kv9a2 550 LDGKAQLP 557 (560)
T ss_dssp ETCCCCCC
T ss_pred eCCCCCCC
Confidence 98766554
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.66 E-value=0.18 Score=51.52 Aligned_cols=132 Identities=11% Similarity=0.067 Sum_probs=81.1
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC------------------------------------C--CeeEEEEeCC
Q psy10778 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPN------------------------------------T--PVSHVTMSET 430 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~------------------------------------~--~V~~l~~sp~ 430 (556)
.++.++++|.+.+.|..+|+.+...+. .+. + .-...+++|+
T Consensus 318 ~v~~~~k~G~l~vlDr~tG~~i~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~g~~~~p~~~Gg~~w~~~a~dP~ 396 (571)
T d2ad6a1 318 LLSHIDRNGILYTLNRENGNLIVAEKV-DPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPE 396 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEES-STTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETT
T ss_pred ceeeccccceEEEEecCCCcEeeeecc-CCcccccccccccccccccCcccccccccCceEEEeccccccccccceECCC
Confidence 567889999999999999987743211 000 0 0012567777
Q ss_pred CCeEEEEeecC--------------------------------cCCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCC
Q psy10778 431 NGEIASVLQTT--------------------------------KTGGSILRLHTIN-AQLITSLASELRITSVTFSNAPE 477 (556)
Q Consensus 431 ~~~i~s~s~~~--------------------------------~~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pd 477 (556)
.+.++...... ....|.|.-+|++ |+.+-.........+-..+ ..
T Consensus 397 ~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~l~AiD~~TG~~~W~~~~~~~~~~g~l~--Ta 474 (571)
T d2ad6a1 397 SRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLY--TK 474 (571)
T ss_dssp TTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEE--ET
T ss_pred CceEEEeccccccccccccccccCCccccccceeeccccCCcccCCcccEEEeccCCCceeeEcCCCCCCCcceeE--ec
Confidence 77666544211 0012467777776 7777666544332221222 12
Q ss_pred CCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCE
Q psy10778 478 GVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQH 526 (556)
Q Consensus 478 g~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~ 526 (556)
+ .++++|+.||.++.+|..+|+.+.++..+....-.-+.+..||+.
T Consensus 475 g---glVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkq 520 (571)
T d2ad6a1 475 G---GLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQ 520 (571)
T ss_dssp T---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred C---CEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEE
Confidence 3 478889999999999999999999987532222222566668854
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=96.61 E-value=0.26 Score=47.74 Aligned_cols=190 Identities=8% Similarity=0.074 Sum_probs=120.4
Q ss_pred CCCEEEEEe-CCCcEEEEEeeeccCcccccccCCCeEee-CCCccEEEEEEcc--CCCEEEEEcCC--------------
Q psy10778 335 DCHTLWLGL-TSGNILVYEYELNASTNKIEFCKPPTILL-GHSACVTDLYLCA--GFSVAVSSSED-------------- 396 (556)
Q Consensus 335 dg~~l~tgs-~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~-~h~~~V~~l~~s~--~~~~l~sgs~D-------------- 396 (556)
||+++++.. .+++|.+.|+++. +..+.+. .....+..++..+ ...+++.++++
T Consensus 98 DGrylFVNDkan~RVAvIdl~~f---------kt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~ 168 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVM---------KCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDV 168 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTT---------EEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCG
T ss_pred ceeEEEEEcCCCceEEEEECcce---------eeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCCccccch
Confidence 788888775 6678888888765 2222222 2334556666654 34467666653
Q ss_pred ----CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc----------CCCCeEEEEE----------
Q psy10778 397 ----GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK----------TGGSILRLHT---------- 452 (556)
Q Consensus 397 ----g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~----------~~d~~I~iwd---------- 452 (556)
+.+.+.|..+++....+.. ......+.++++|+++++.+.+.. ..-..+.+++
T Consensus 169 ~~y~~~~t~ID~~tm~V~~QV~V---~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~ 245 (459)
T d1fwxa2 169 ANYVNVFTAVDADKWEVAWQVLV---SGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAA 245 (459)
T ss_dssp G-EEEEEEEEETTTTEEEEEEEE---SSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHH
T ss_pred hhcceEEEEEecCCceEEEEeee---CCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHhhhc
Confidence 2367889999988887776 466788999999999998875330 0111233333
Q ss_pred -------------eC----CcEEEEeecCCCeEEEEEeeCCCCCcceEEE-EEeCCCeEEEEeCCCCe------------
Q psy10778 453 -------------IN----AQLITSLASELRITSVTFSNAPEGVSQNVIV-TGHSDGTIQLWSGYKLA------------ 502 (556)
Q Consensus 453 -------------i~----g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~-tg~~dg~I~iwd~~~~~------------ 502 (556)
.+ ...+..+........+..+ ||| ++++ +|.-+.++.++|+....
T Consensus 246 Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vS--PDG---Kyi~VaGKLs~tVSViD~~Ki~~~~~~~~~~~~~ 320 (459)
T d1fwxa2 246 GDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMA--PDK---KHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSA 320 (459)
T ss_dssp TCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEEC--TTS---SEEEEECTTSSBEEEEEGGGHHHHHHSCC-GGGG
T ss_pred CCcEEeCCceeecccccCCcceeEEEecCCCCCceEEC--CCC---CEEEEeCCcCCcEEEEEehhhhhhhcccCCcccc
Confidence 22 0122233334456678888 999 5554 55578999999985321
Q ss_pred EEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCC
Q psy10778 503 HLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSS 543 (556)
Q Consensus 503 ~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~ 543 (556)
...+.. ..-.....+|+.+|....|.--|..|.-|++..
T Consensus 321 ~~~e~e--lglgPLht~fd~~g~aytslfids~v~kw~~~~ 359 (459)
T d1fwxa2 321 VVAEPE--LGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED 359 (459)
T ss_dssp EEECCB--CCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred EEeecc--cCcCccccccCCCceEEEEeeccceEEEEecch
Confidence 222222 234556778998886666666899999999854
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=96.41 E-value=0.36 Score=49.19 Aligned_cols=59 Identities=10% Similarity=0.052 Sum_probs=42.3
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.|.-+|+.+++.+.+.... .+..+-.++-.+.++++|+.||.++.+|.++++.+-.+.
T Consensus 444 G~l~AiD~~TG~~~W~~~~~--~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~lW~~~ 502 (571)
T d2ad6a1 444 GQIRAFDLTTGKAKWTKWEK--FAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKELWNFK 502 (571)
T ss_dssp EEEEEECTTTCCEEEEEEES--SCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ccEEEeccCCCceeeEcCCC--CCCCcceeEecCCEEEEECCCCeEEEEECCCCcEEEEEE
Confidence 56888899999988777632 222222233346688889999999999999998876553
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.11 E-value=0.5 Score=43.34 Aligned_cols=223 Identities=10% Similarity=0.074 Sum_probs=140.6
Q ss_pred eEEeccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCC
Q psy10778 295 MICWNECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGH 374 (556)
Q Consensus 295 ~l~~gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h 374 (556)
++|--+ ..++.++|+++.+.+.... -...|.-=.|-.+ +.|+..+ +..|+-|+++... .+.+.+..|
T Consensus 76 IiALra-g~~LQiFnletK~klks~~--~~e~VvfWkWis~-~~L~lVT-~taVYHW~~~g~s--------~P~k~fdR~ 142 (327)
T d1utca2 76 VIALKA-GKTLQIFNIEMKSKMKAHT--MTDDVTFWKWISL-NTVALVT-DNAVYHWSMEGES--------QPVKMFDRH 142 (327)
T ss_dssp EEEEEE-TTEEEEEETTTTEEEEEEE--CSSCCCEEEESSS-SEEEEEC-SSEEEEEESSSSC--------CCEEEEECC
T ss_pred EEEEec-CCeEEEEehhHhhhhceEE--cCCCcEEEEecCC-CEEEEEc-CCceEEEcccCCC--------Cchhhhhhc
Confidence 444433 5689999999876666554 3456766777755 5666655 3689999986431 334445444
Q ss_pred C----ccEEEEEEccCCCEEEEEc---C----CCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC--CCCeEEEEeecC
Q psy10778 375 S----ACVTDLYLCAGFSVAVSSS---E----DGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE--TNGEIASVLQTT 441 (556)
Q Consensus 375 ~----~~V~~l~~s~~~~~l~sgs---~----Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp--~~~~i~s~s~~~ 441 (556)
. ..|..-..+++.++++..+ . .|.+.+|..++ +.-+.+++ | .+....+.+.- ....+++-...+
T Consensus 143 ~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieG-h-aa~F~~~~~~g~~~~~~lf~fa~r~ 219 (327)
T d1utca2 143 SSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEG-H-AASFAQFKMEGNAEESTLFCFAVRG 219 (327)
T ss_dssp GGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECC-S-EEEEEEECCTTCSSCEEEEEEEEEE
T ss_pred ccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccc-e-eeeeEEEEcCCCCCCceEEEEEECC
Confidence 3 4677778888888765432 2 37788999885 45667777 6 33333332221 112233222211
Q ss_pred cCCCCeEEEEEeC----Cc-----EEEEe--e---cCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEe
Q psy10778 442 KTGGSILRLHTIN----AQ-----LITSL--A---SELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTL 507 (556)
Q Consensus 442 ~~~d~~I~iwdi~----g~-----~i~~~--~---~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~ 507 (556)
...+++++.++. |. ....+ . ..+...++..+ +.. .++..-+.-|.|++||+.++.++..-
T Consensus 220 -~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs--~ky---giiyviTK~G~i~lyDleTgt~i~~n 293 (327)
T d1utca2 220 -QAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQIS--EKH---DVVFLITKYGYIHLYDLETGTCIYMN 293 (327)
T ss_dssp -TTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEE--TTT---TEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred -CCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEee--ccC---CEEEEEecCcEEEEEEcccccEEEEe
Confidence 145789998884 21 11111 1 14567788888 544 58888899999999999999998877
Q ss_pred cCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEE
Q psy10778 508 NTNVALPVIAVTYSCDSQHLYASNTEGLVIIWE 540 (556)
Q Consensus 508 ~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwd 540 (556)
+ -...+|-..+-..+..-+++...+|.|.--.
T Consensus 294 R-Is~~~iF~~a~~~~~~Gi~~VNr~GqVl~vs 325 (327)
T d1utca2 294 R-ISGETIFVTAPHEATAGIIGVNRKGQVLSVC 325 (327)
T ss_dssp E-CCSSCEEEEEEETTTTEEEEEETTSEEEEEE
T ss_pred e-cCCCceEEeccCCCCceEEEECCCCeEEEEE
Confidence 6 3457777666666656677777888876543
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=95.97 E-value=0.27 Score=50.24 Aligned_cols=151 Identities=19% Similarity=0.195 Sum_probs=95.7
Q ss_pred EEEEEcCCCcEEEEeCCCCeEEEEeCCCCCC----------------------------------CCeeEEEEeCCCCeE
Q psy10778 389 VAVSSSEDGTCLLWDINTIGYIREIPCVDPN----------------------------------TPVSHVTMSETNGEI 434 (556)
Q Consensus 389 ~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~----------------------------------~~V~~l~~sp~~~~i 434 (556)
.++.++++|.+.++|..+|+.+..... .+. ..-..++++|+.+.+
T Consensus 329 ~v~~~~k~G~l~~lDr~tGe~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pg~~Gg~~w~~~a~dp~~~~~ 407 (573)
T d1kb0a2 329 VILHAPKNGFFFVLDRTNGKFISAKNF-VPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGLV 407 (573)
T ss_dssp EEEECCTTSEEEEEETTTCCEEEEEES-SCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTEE
T ss_pred eeeeccccceeEEeccccccccccccc-cccccccccccccceeeeeeccccccceEEeecccCCccccccccCCCcceE
Confidence 677888999999999999988754432 100 001234677877766
Q ss_pred EEEeecCc--------------------------------------CCCCeEEEEEeC-CcEEEEeecCCCeEEEEEeeC
Q psy10778 435 ASVLQTTK--------------------------------------TGGSILRLHTIN-AQLITSLASELRITSVTFSNA 475 (556)
Q Consensus 435 ~s~s~~~~--------------------------------------~~d~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~ 475 (556)
+....... ..-|.+.-||++ |+.+-......+..+-..+
T Consensus 408 yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~~~~~~G~l~AiD~~tGk~~W~~~~~~p~~gg~ls-- 485 (573)
T d1kb0a2 408 YLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLT-- 485 (573)
T ss_dssp EEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEE--
T ss_pred EeeccccceeeecccccccccCCCCccccccccccccccccCCCCCCCcccEEEeCCCCCceEeeecCCCCCCCceEE--
Confidence 65433210 011467778876 7877777654433322233
Q ss_pred CCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCC---CCCCeEEEEEecCCC-EEEEEcC----------------CCc
Q psy10778 476 PEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTN---VALPVIAVTYSCDSQ-HLYASNT----------------EGL 535 (556)
Q Consensus 476 pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~---h~~~V~~l~~s~dg~-~l~sgs~----------------Dg~ 535 (556)
-.| .++.+|+.||.++.+|..+|+.+.++... +..+ +.+..||+ +|+..+. .+.
T Consensus 486 tag---glVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P---~ty~~~GkQYv~v~~G~gg~~~~~~~~~~~~~~~~ 559 (573)
T d1kb0a2 486 TAG---NVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAP---STYMVDGRQYVSVAVGWGGVYGLAARATERQGPGT 559 (573)
T ss_dssp ETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCC---EEEEETTEEEEEEEECCCHHHHHHCCSCSCCCCCE
T ss_pred EcC---CEEEEECCCCeEEEEECCCCcEeEEEECCCCccccC---EEEEECCEEEEEEEeCCCcccccccccccCCCCCE
Confidence 234 58888999999999999999999988752 1223 45566886 3332221 246
Q ss_pred EEEEEcCCCCCcC
Q psy10778 536 VIIWESSSHNRTP 548 (556)
Q Consensus 536 V~vwdl~~~~~~~ 548 (556)
|.++.|....++|
T Consensus 560 ~~~F~l~g~~~~~ 572 (573)
T d1kb0a2 560 VYTFVVGGKARMP 572 (573)
T ss_dssp EEEEEETCBCCCC
T ss_pred EEEEEeCCcCCCc
Confidence 8888887766654
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.96 E-value=1.1 Score=45.74 Aligned_cols=99 Identities=10% Similarity=0.106 Sum_probs=63.9
Q ss_pred CeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 446 SILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
|.|.-||++ |+.+-.........+-.++ ..| .++..|+.||.++.+|..+|+.+.++.......-.=+.+..||
T Consensus 453 G~l~A~D~~TG~~~W~~~~~~~~~gg~ls--Tag---glVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dG 527 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKMERFAVWGGTMA--TAG---DLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKG 527 (596)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSBCEE--ETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred ceEEEEeCCCCceecccCCCCCCccceeE--ecC---CEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECC
Confidence 567777776 7777666544433333333 234 5788899999999999999999999875221111223455678
Q ss_pred CE-EEEEc-----------------------------------CCCcEEEEEcCCCCCcCe
Q psy10778 525 QH-LYASN-----------------------------------TEGLVIIWESSSHNRTPK 549 (556)
Q Consensus 525 ~~-l~sgs-----------------------------------~Dg~V~vwdl~~~~~~~~ 549 (556)
+. |+... ..|.|.++.+..+..++.
T Consensus 528 kQYvav~~G~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~vf~l~g~~~~~~ 588 (596)
T d1w6sa_ 528 TQYVAIYYGVGGWPGVGLVFDLADPTAGLGAVGAFKKLANYTQMGGGVVVFSLDGKGPYDD 588 (596)
T ss_dssp EEEEEEEECCCTTTTHHHHHTCCCTTCGGGHHHHTTTGGGTCCCCCEEEEEEETTCCTTSS
T ss_pred EEEEEEEecCCccccccccccccCccccccccccccccccccCCCCEEEEEEeCCCCCCCC
Confidence 53 43221 246799999988766654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=95.80 E-value=0.38 Score=45.54 Aligned_cols=99 Identities=4% Similarity=-0.137 Sum_probs=62.7
Q ss_pred eEEEEeCCCCCCcce--EcCCCCCceEEEEEcCCCCEEEEEeCC-CcEEEEEeeeccCcccccccCCCeEeeCCCccEEE
Q psy10778 304 LIRLKMSKELPATPV--IRPPLGATIATATTAPDCHTLWLGLTS-GNILVYEYELNASTNKIEFCKPPTILLGHSACVTD 380 (556)
Q Consensus 304 ~I~lw~~~~~~~~~~--~~~~h~~~V~~i~~s~dg~~l~tgs~D-g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 380 (556)
.+.+||..++..... ....|.......++.++|++++.|+.+ ..+.+||..+..... ...+..... -.+
T Consensus 53 ~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~~~~~w~~-------~~~~~~~r~-~~~ 124 (387)
T d1k3ia3 53 LTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDSSSDSWIP-------GPDMQVARG-YQS 124 (387)
T ss_dssp EEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEGGGTEEEE-------CCCCSSCCS-SCE
T ss_pred EEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecCccCcccc-------ccccccccc-ccc
Confidence 367899988765432 222344444566788999999998755 589999987652111 111111111 124
Q ss_pred EEEccCCCEEEEEcCC------CcEEEEeCCCCeEE
Q psy10778 381 LYLCAGFSVAVSSSED------GTCLLWDINTIGYI 410 (556)
Q Consensus 381 l~~s~~~~~l~sgs~D------g~I~iwdl~~~~~v 410 (556)
.+..+++++++.|+.+ ..+.+||..+.+..
T Consensus 125 ~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~ 160 (387)
T d1k3ia3 125 SATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWT 160 (387)
T ss_dssp EEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEE
T ss_pred eeeecCCceeeeccccccccccceeeeecCCCCcee
Confidence 5667789998888753 46899999887543
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=95.46 E-value=0.62 Score=47.61 Aligned_cols=59 Identities=14% Similarity=0.128 Sum_probs=44.5
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.|.-||+.+++.+.+... ..++.+-.++..|.++++|+.||.++.+|.++++.+-.+.
T Consensus 453 G~l~A~D~~TG~~~W~~~~--~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~LW~~~ 511 (596)
T d1w6sa_ 453 GQIKAYNAITGDYKWEKME--RFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLLWKFK 511 (596)
T ss_dssp EEEEEECTTTCCEEEEEEE--SSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred ceEEEEeCCCCceecccCC--CCCCccceeEecCCEEEEECCCCeEEEEECCCCcEeeEEE
Confidence 5788889999998877652 2333333345567788899999999999999999886664
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=95.43 E-value=1.1 Score=45.20 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=45.1
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.|.-+|+.+++.+.+... ..+..+-.++-.+.++++|+.||.++.+|.++++.+-.+.
T Consensus 438 G~l~A~D~~tGk~~W~~~~--~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~LW~~~ 496 (560)
T d1kv9a2 438 GALLAWDPVKQKAAWKVPY--PTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEALWQFE 496 (560)
T ss_dssp EEEEEEETTTTEEEEEEEE--SSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred cceEEEeCCCCeEeeeccC--CCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEeEEEE
Confidence 5688899999999888763 2333333345557788899999999999999999876654
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=94.64 E-value=0.61 Score=43.97 Aligned_cols=164 Identities=11% Similarity=0.007 Sum_probs=93.8
Q ss_pred EEEEEcCCCCEEEEEeCCC-----------cEEEEEeeeccCcccccccCCCeEe-eCCCccEEEEEEccCCCEEEEEcC
Q psy10778 328 ATATTAPDCHTLWLGLTSG-----------NILVYEYELNASTNKIEFCKPPTIL-LGHSACVTDLYLCAGFSVAVSSSE 395 (556)
Q Consensus 328 ~~i~~s~dg~~l~tgs~Dg-----------~I~vwd~~~~~~~~~~~~~~~~~~l-~~h~~~V~~l~~s~~~~~l~sgs~ 395 (556)
...+...+|+.++.|+.+. .+.+||..++... ..... ..|.......++.+++.+++.|+.
T Consensus 23 ~~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~-------~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~ 95 (387)
T d1k3ia3 23 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVS-------DRTVTVTKHDMFCPGISMDGNGQIVVTGGN 95 (387)
T ss_dssp EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBC-------CCEEEECSCCCSSCEEEECTTSCEEEECSS
T ss_pred EEEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEe-------ecCCCCCCcccceeEEEEecCCcEEEeecC
Confidence 3444456777777777431 3678888765221 11222 223333445678899999998876
Q ss_pred C-CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecC-cCCCCeEEEEEeCCcEEEEeecC---------
Q psy10778 396 D-GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTT-KTGGSILRLHTINAQLITSLASE--------- 464 (556)
Q Consensus 396 D-g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~-~~~d~~I~iwdi~g~~i~~~~~~--------- 464 (556)
+ .++.+||..+......-..+. ...-...+..++++.++.++... ...-..+.+||.....-..+...
T Consensus 96 ~~~~~~~yd~~~~~w~~~~~~~~-~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~ 174 (387)
T d1k3ia3 96 DAKKTSLYDSSSDSWIPGPDMQV-ARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTAD 174 (387)
T ss_dssp STTCEEEEEGGGTEEEECCCCSS-CCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCC
T ss_pred CCcceeEecCccCcccccccccc-cccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCccccccccc
Confidence 5 689999999876543222201 23345677788888888876322 11235688999875433332110
Q ss_pred -C-----CeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeE
Q psy10778 465 -L-----RITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAH 503 (556)
Q Consensus 465 -~-----~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~ 503 (556)
. .-....+. .++| ++++.|...+.+.+++..+...
T Consensus 175 ~~~~~~~~~~~~~~~-~~~G---~~~~~g~~~~~~~~~~~~~~~~ 215 (387)
T d1k3ia3 175 KQGLYRSDNHAWLFG-WKKG---SVFQAGPSTAMNWYYTSGSGDV 215 (387)
T ss_dssp TTGGGTTTCSCCEEE-CGGG---CEEECCSSSEEEEEECSTTCEE
T ss_pred ccceeeccceeEEEE-eCCC---CEEEecCcCCcEEecCcccCcE
Confidence 0 00111111 0355 6777777777788888766654
|
| >d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Low density lipoprotein (LDL) receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.61 E-value=1.5 Score=39.39 Aligned_cols=164 Identities=9% Similarity=-0.062 Sum_probs=104.6
Q ss_pred CCceEEEEEcCCCCEEEEE-eCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEc--CCCcEE
Q psy10778 324 GATIATATTAPDCHTLWLG-LTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSS--EDGTCL 400 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tg-s~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs--~Dg~I~ 400 (556)
...+..+++...++.|..+ ...+.|.+.+++.. .....+.........+++.|...++.-.. ..+.|.
T Consensus 76 ~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~---------~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~ 146 (266)
T d1ijqa1 76 IQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGV---------KRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIK 146 (266)
T ss_dssp CSCCCEEEEETTTTEEEEEETTTTEEEEEETTSS---------SEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEE
T ss_pred CCCcceEEEeeccceEEEEecCCCEEEeEecCCc---------eEEEEEcCCCCCcceEEEEcccCeEEEeccCCCccee
Confidence 3456778887766655555 45578888887653 22233445556788999998665554433 345566
Q ss_pred EEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEEe-e---cCCCeEEEEEeeCC
Q psy10778 401 LWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITSL-A---SELRITSVTFSNAP 476 (556)
Q Consensus 401 iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~~-~---~~~~i~~i~~s~~p 476 (556)
..++........... . -.....+++++.++.|..+.. ..+.|...+++|.-...+ . ......++++. .
T Consensus 147 r~~~dGs~~~~l~~~-~-~~~p~gl~iD~~~~~lYw~d~----~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~--~ 218 (266)
T d1ijqa1 147 KGGLNGVDIYSLVTE-N-IQWPNGITLDLLSGRLYWVDS----KLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF--E 218 (266)
T ss_dssp EEETTSCCEEEEECS-S-CSCEEEEEEETTTTEEEEEET----TTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE--T
T ss_pred EeccCCCceeccccc-c-cceeeEEEeeccccEEEEecC----CcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE--C
Confidence 667663333333332 2 456789999998888887753 668899999986432222 1 12346678877 3
Q ss_pred CCCcceEEEEEeCCCeEEEEeCCCCeEEEEec
Q psy10778 477 EGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLN 508 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~ 508 (556)
+ .+..+-..++.|...+..+++....+.
T Consensus 219 -~---~ly~td~~~~~I~~~~~~~g~~~~~~~ 246 (266)
T d1ijqa1 219 -D---KVFWTDIINEAIFSANRLTGSDVNLLA 246 (266)
T ss_dssp -T---EEEEEETTTTEEEEEETTTCCCCEEEE
T ss_pred -C---EEEEEECCCCeEEEEECCCCcceEEEE
Confidence 3 566666677888888887777666555
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=94.17 E-value=1.5 Score=44.41 Aligned_cols=76 Identities=17% Similarity=0.267 Sum_probs=50.8
Q ss_pred CeEEEEEeC-CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCC
Q psy10778 446 SILRLHTIN-AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDS 524 (556)
Q Consensus 446 ~~I~iwdi~-g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg 524 (556)
|.|.-+|++ |+.+-......++.+-..+ ..+ .++.+|+.||.++.+|..+|+.+.++.......-.-+.+..+|
T Consensus 466 G~l~AiD~~TG~i~W~~~~~~p~~~g~ls--tag---glVF~Gt~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~G 540 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEHLPLWAGVLA--TAG---NLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDG 540 (582)
T ss_dssp EEEEEECTTTCCEEEEEEESSCCCSCCEE--ETT---TEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETT
T ss_pred CeEEEEcCCCCcEEeecCCCCCCccceeE--EcC---CeEEEeCCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECC
Confidence 567777776 7777776544443332233 234 5788899999999999999999999876222211225667788
Q ss_pred CE
Q psy10778 525 QH 526 (556)
Q Consensus 525 ~~ 526 (556)
+.
T Consensus 541 ~q 542 (582)
T d1flga_ 541 EQ 542 (582)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=93.83 E-value=2 Score=40.27 Aligned_cols=147 Identities=7% Similarity=0.147 Sum_probs=96.1
Q ss_pred CCCEEEEEcCCCcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeC------CCCeEEEEeecCcCCCCeEEEEEeC--CcE
Q psy10778 386 GFSVAVSSSEDGTCLLWDINTIGYIREIPCVDPNTPVSHVTMSE------TNGEIASVLQTTKTGGSILRLHTIN--AQL 457 (556)
Q Consensus 386 ~~~~l~sgs~Dg~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp------~~~~i~s~s~~~~~~d~~I~iwdi~--g~~ 457 (556)
+.++++...+.+-|.+||+. |+.+..+.. +.+..|..-. ....|++++.... ...+|.+|.++ ...
T Consensus 39 ~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~----Gr~NNVDvr~~~~l~~~~~di~vasnR~~-~~~~l~~~~id~~~~~ 112 (353)
T d1h6la_ 39 QNSKLITTNKKSGLAVYSLE-GKMLHSYHT----GKLNNVDIRYDFPLNGKKVDIAAASNRSE-GKNTIEIYAIDGKNGT 112 (353)
T ss_dssp GGCEEEEEETTSCCEEEETT-CCEEEECCS----SCEEEEEEEEEEEETTEEEEEEEEEECCT-TTCEEEEEEEETTTTE
T ss_pred CccEEEEEcCcCCEEEEcCC-CcEEEeccc----CCcCccccccccccCCcceEEEEEeCCcC-cceeEEEEEecCcccc
Confidence 45677777787779999996 888887754 5666665542 2234566653210 12468888886 334
Q ss_pred EEEeec--------CCCeEEEEEeeCCC-CCcceEEEEEeCCCeEEEEeCC---C----CeEEEEecCCCCCCeEEEEEe
Q psy10778 458 ITSLAS--------ELRITSVTFSNAPE-GVSQNVIVTGHSDGTIQLWSGY---K----LAHLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 458 i~~~~~--------~~~i~~i~~s~~pd-g~~~~~l~tg~~dg~I~iwd~~---~----~~~~~~~~~~h~~~V~~l~~s 521 (556)
+..+.. ...+..+|+...+. |. -++++...+|.+..|.+. . .+.++.+. ....+.++++.
T Consensus 113 l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~--~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~--~~~q~EGCVvD 188 (353)
T d1h6la_ 113 LQSITDPNRPIASAIDEVYGFSLYHSQKTGK--YYAMVTGKEGEFEQYELNADKNGYISGKKVRAFK--MNSQTEGMAAD 188 (353)
T ss_dssp EEECSCSSSCEECSSSSCCCEEEEECTTTCC--EEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEE--CSSCEEEEEEE
T ss_pred cccccccccccccccCcceEEEEEecCCCCe--EEEEEEcCCceEEEEEEEcCCCCceeeEeeeccC--CCCccceEEEe
Confidence 444421 23467778753343 31 356677788999888662 2 24666776 35789999999
Q ss_pred cCCCEEEEEcCCCcEEEEEcC
Q psy10778 522 CDSQHLYASNTEGLVIIWESS 542 (556)
Q Consensus 522 ~dg~~l~sgs~Dg~V~vwdl~ 542 (556)
.+...|+.+-++..|..++..
T Consensus 189 de~~~LyisEE~~Giw~~~a~ 209 (353)
T d1h6la_ 189 DEYGSLYIAEEDEAIWKFSAE 209 (353)
T ss_dssp TTTTEEEEEETTTEEEEEESS
T ss_pred CCCCcEEEecCccceEEEEec
Confidence 999999999888777666654
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.57 E-value=2.6 Score=38.40 Aligned_cols=226 Identities=6% Similarity=0.039 Sum_probs=129.7
Q ss_pred CCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEE
Q psy10778 302 DNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDL 381 (556)
Q Consensus 302 Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l 381 (556)
..++.+.|+.+..........-. +.-.+|..+.||.-+ ..++.++|+++. +.++...- ..+|.-=
T Consensus 44 ~~~VvIidl~n~~~~~Rrpi~Ad----sAIMhP~~~IiALra-g~~LQiFnletK---------~klks~~~-~e~VvfW 108 (327)
T d1utca2 44 QAQVVIIDMNDPSNPIRRPISAD----SAIMNPASKVIALKA-GKTLQIFNIEMK---------SKMKAHTM-TDDVTFW 108 (327)
T ss_dssp EEEEEEEETTSTTSCEEEECCCS----EEEECSSSSEEEEEE-TTEEEEEETTTT---------EEEEEEEC-SSCCCEE
T ss_pred CceEEEEECCCCCcceecccchh----hhhcCCCCcEEEEec-CCeEEEEehhHh---------hhhceEEc-CCCcEEE
Confidence 45788888876543222221222 334568888888766 468999999875 22222222 2355555
Q ss_pred EEccCCCEEEEEcCCCcEEEEeCCCC-eEEEEeCCCCC---CCCeeEEEEeCCCCeEEEEeecC--cCCCCeEEEEEeCC
Q psy10778 382 YLCAGFSVAVSSSEDGTCLLWDINTI-GYIREIPCVDP---NTPVSHVTMSETNGEIASVLQTT--KTGGSILRLHTINA 455 (556)
Q Consensus 382 ~~s~~~~~l~sgs~Dg~I~iwdl~~~-~~v~~l~~~h~---~~~V~~l~~sp~~~~i~s~s~~~--~~~d~~I~iwdi~g 455 (556)
.|-.+.. |+-.+ +..|.-|++... .+.+.+.. |. ...|-.-..+++.++++..+-.. +.-.|.+.+|..+.
T Consensus 109 kWis~~~-L~lVT-~taVYHW~~~g~s~P~k~fdR-~~~L~~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er 185 (327)
T d1utca2 109 KWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDR-HSSLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR 185 (327)
T ss_dssp EESSSSE-EEEEC-SSEEEEEESSSSCCCEEEEEC-CGGGTTCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT
T ss_pred EecCCCE-EEEEc-CCceEEEcccCCCCchhhhhh-cccccCceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc
Confidence 6655443 33333 457999999532 45555554 41 35677778889999887664321 11346788888875
Q ss_pred cEEEEeecC-CCeEEEEEeeCCCCCcceEEEEE---eCCCeEEEEeCCCC--------eEEEEecC---CCCCCeEEEEE
Q psy10778 456 QLITSLASE-LRITSVTFSNAPEGVSQNVIVTG---HSDGTIQLWSGYKL--------AHLLTLNT---NVALPVIAVTY 520 (556)
Q Consensus 456 ~~i~~~~~~-~~i~~i~~s~~pdg~~~~~l~tg---~~dg~I~iwd~~~~--------~~~~~~~~---~h~~~V~~l~~ 520 (556)
+.-+.++.. .....+... .+.....+++.+ ...+++++.++... +....+.. ....-..++..
T Consensus 186 ~~sQ~ieGhaa~F~~~~~~--g~~~~~~lf~fa~r~~~~~kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqv 263 (327)
T d1utca2 186 KVSQPIEGHAASFAQFKME--GNAEESTLFCFAVRGQAGGKLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQI 263 (327)
T ss_dssp TEEEEECCSEEEEEEECCT--TCSSCEEEEEEEEEETTEEEEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEE
T ss_pred CcCccccceeeeeEEEEcC--CCCCCceEEEEEECCCCCcEEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEe
Confidence 554444321 111111111 000011233322 23368888887431 11112211 12344678999
Q ss_pred ecCCCEEEEEcCCCcEEEEEcCCCCCc
Q psy10778 521 SCDSQHLYASNTEGLVIIWESSSHNRT 547 (556)
Q Consensus 521 s~dg~~l~sgs~Dg~V~vwdl~~~~~~ 547 (556)
|+....++..+.-|-|+++|+.++..+
T Consensus 264 s~kygiiyviTK~G~i~lyDleTgt~i 290 (327)
T d1utca2 264 SEKHDVVFLITKYGYIHLYDLETGTCI 290 (327)
T ss_dssp ETTTTEEEEEETTSEEEEEETTTCCEE
T ss_pred eccCCEEEEEecCcEEEEEEcccccEE
Confidence 999999999999999999999997654
|
| >d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Ethanol dehydrogenase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=92.64 E-value=5.7 Score=39.77 Aligned_cols=59 Identities=14% Similarity=0.217 Sum_probs=45.4
Q ss_pred CeEEEEeCCCCeEEEEecCCCCCCeEEEEEecCCCEEEEEcCCCcEEEEEcCCCCCcCeee
Q psy10778 491 GTIQLWSGYKLAHLLTLNTNVALPVIAVTYSCDSQHLYASNTEGLVIIWESSSHNRTPKFL 551 (556)
Q Consensus 491 g~I~iwd~~~~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs~Dg~V~vwdl~~~~~~~~~~ 551 (556)
|.|.-+|+.+++.+.+...+ .++.+-.++..+.++++|+.||.++.+|.++++.+-.+.
T Consensus 466 G~l~AiD~~TG~i~W~~~~~--~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~LW~~~ 524 (582)
T d1flga_ 466 GSLRAMDPVSGKVVWEHKEH--LPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQ 524 (582)
T ss_dssp EEEEEECTTTCCEEEEEEES--SCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEE
T ss_pred CeEEEEcCCCCcEEeecCCC--CCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEeEEEE
Confidence 67888999999988887732 333333345567888899999999999999999876654
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.56 E-value=1.6 Score=41.61 Aligned_cols=181 Identities=9% Similarity=-0.041 Sum_probs=97.2
Q ss_pred ceEEEEEcCCCCEEEEEeCCCcEEEEEeeeccCc--ccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10778 326 TIATATTAPDCHTLWLGLTSGNILVYEYELNAST--NKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSEDGTCLLWD 403 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~~~~--~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~Dg~I~iwd 403 (556)
...-++.++...++++|+.++ ++|-....-... ............ .-..|..++++.+ .++.. .++.+..++
T Consensus 38 ~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~--~ip~v~~vafs~d--~l~v~-~~~~l~~~~ 111 (381)
T d1xipa_ 38 SLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEK--EIPDVIFVCFHGD--QVLVS-TRNALYSLD 111 (381)
T ss_dssp CCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEE--ECTTEEEEEEETT--EEEEE-ESSEEEEEE
T ss_pred ccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceecc--CCCCeEEEEeeCC--EEEEE-eCCCEEEEE
Confidence 355677888777888888764 556654321000 000000111111 1236888999755 44443 455678787
Q ss_pred CCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEE------eecCCCeEEEEEeeCC
Q psy10778 404 INTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITS------LASELRITSVTFSNAP 476 (556)
Q Consensus 404 l~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~------~~~~~~i~~i~~s~~p 476 (556)
..+......... . ..++..+.++|. .++... .++.+.++++. ++.... ..-.+.+.+++|+ +
T Consensus 112 ~~~l~~~~~~~~-~-~~~~~~~~~~p~--~~~l~~-----~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v~ws--~ 180 (381)
T d1xipa_ 112 LEELSEFRTVTS-F-EKPVFQLKNVNN--TLVILN-----SVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAVLLK--D 180 (381)
T ss_dssp SSSTTCEEEEEE-C-SSCEEEEEECSS--EEEEEE-----TTSEEEEEETTTCCEEEEEESEEEEEECSSEEEEEET--T
T ss_pred eecccccccccc-c-cccccceecCCc--eeEEEe-----cCCCEEEEEeccCccccccCCcceEEecCCceEEEEe--C
Confidence 776444433333 2 456888888875 344444 68899999986 432211 1224667777777 6
Q ss_pred CCCcceEEEEEeCCCeEEEE-eCCCCeEEEEecC--CCCCCeEEEEEecCCCEEEEE
Q psy10778 477 EGVSQNVIVTGHSDGTIQLW-SGYKLAHLLTLNT--NVALPVIAVTYSCDSQHLYAS 530 (556)
Q Consensus 477 dg~~~~~l~tg~~dg~I~iw-d~~~~~~~~~~~~--~h~~~V~~l~~s~dg~~l~sg 530 (556)
.| ..++++..++ ..+- ++... ..+.. .....|.+|.|-.+..++++-
T Consensus 181 kg---kq~v~~~g~~-~q~k~~i~~~---~~~~~p~~~~~~v~sI~WL~~~~F~vvy 230 (381)
T d1xipa_ 181 RS---FQSFAWRNGE-MEKQFEFSLP---SELEELPVEEYSPLSVTILSPQDFLAVF 230 (381)
T ss_dssp SC---EEEEEEETTE-EEEEEEECCC---HHHHTSCTTTSEEEEEEESSSSEEEEEE
T ss_pred Cc---EEEEEeCCCc-eeeccCCCCc---cccCCCcCCCcceeEEEEecCceEEEEE
Confidence 66 5666664321 1110 11000 01110 124568899998777766654
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=91.67 E-value=1.9 Score=43.48 Aligned_cols=80 Identities=11% Similarity=0.116 Sum_probs=53.2
Q ss_pred CcEEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeC-CcEEEEeecCCCeEE--EEEe
Q psy10778 397 GTCLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTIN-AQLITSLASELRITS--VTFS 473 (556)
Q Consensus 397 g~I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~-g~~i~~~~~~~~i~~--i~~s 473 (556)
|.+.-||+.+++.+-+.+. ..+...=.++-.++.+++++ .|+.++.+|.+ |+.+.++.....+.+ +.|.
T Consensus 457 G~l~AiD~~tGk~~W~~~~---~~p~~gg~lstagglVF~G~-----~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~ 528 (573)
T d1kb0a2 457 GRLLAWDPVAQKAAWSVEH---VSPWNGGTLTTAGNVVFQGT-----ADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYM 528 (573)
T ss_dssp EEEEEEETTTTEEEEEEEE---SSSCCCCEEEETTTEEEEEC-----TTSEEEEEETTTCCEEEEEECSSCCCSCCEEEE
T ss_pred ccEEEeCCCCCceEeeecC---CCCCCCceEEEcCCEEEEEC-----CCCeEEEEECCCCcEeEEEECCCCccccCEEEE
Confidence 4577889999988877654 22222222334578888887 89999999997 999998875443322 5555
Q ss_pred eCCCCCcceEEEEEe
Q psy10778 474 NAPEGVSQNVIVTGH 488 (556)
Q Consensus 474 ~~pdg~~~~~l~tg~ 488 (556)
.+|+ .++++.+
T Consensus 529 --~~Gk--QYv~v~~ 539 (573)
T d1kb0a2 529 --VDGR--QYVSVAV 539 (573)
T ss_dssp --ETTE--EEEEEEE
T ss_pred --ECCE--EEEEEEe
Confidence 5673 4555544
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=91.57 E-value=6.1 Score=37.72 Aligned_cols=204 Identities=8% Similarity=-0.067 Sum_probs=103.5
Q ss_pred ceEEEEEcCCCCEEEEEe-CC----CcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEccCCCEEEEEcCC----
Q psy10778 326 TIATATTAPDCHTLWLGL-TS----GNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCAGFSVAVSSSED---- 396 (556)
Q Consensus 326 ~V~~i~~s~dg~~l~tgs-~D----g~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~l~sgs~D---- 396 (556)
.+..++++|++++++.+- .+ -+++++|+.++.... ..+.. .....++|+++++.|+-...+
T Consensus 126 ~~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~--------~~i~~--~~~~~~~W~~D~~~~~Y~~~~~~~~ 195 (430)
T d1qfma1 126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELP--------DVLER--VKFSCMAWTHDGKGMFYNAYPQQDG 195 (430)
T ss_dssp EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEE--------EEEEE--ECSCCEEECTTSSEEEEEECCCCSS
T ss_pred eecceEecCCCCEEEEEeccccCchheeEEeccCcceecc--------ccccc--ccccceEEcCCCCEEEEEEeccccC
Confidence 345667899999988652 23 368899988762100 11111 112468899999876644322
Q ss_pred ------------CcEEEEeCCCCe--EEEEeCCCCC-CCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCC---c--
Q psy10778 397 ------------GTCLLWDINTIG--YIREIPCVDP-NTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINA---Q-- 456 (556)
Q Consensus 397 ------------g~I~iwdl~~~~--~v~~l~~~h~-~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g---~-- 456 (556)
..+..|.+.+.. -+..+.. .+ ...+..+..+.++++++.......+....+.+.++.. .
T Consensus 196 ~~~~~~~~~~~~~~v~~h~lgt~~~~d~~v~~e-~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~ 274 (430)
T d1qfma1 196 KSDGTETSTNLHQKLYYHVLGTDQSEDILCAEF-PDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGIT 274 (430)
T ss_dssp CCSSSCCCCCCCCEEEEEETTSCGGGCEEEECC-TTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSC
T ss_pred cccccccccCCcceEEEEECCCCcccccccccc-ccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccc
Confidence 257777777642 2233333 20 2346677889999988765432211222344445431 1
Q ss_pred ----EEEEeec-CCCeEEEEEeeCCCCCcceEEEEEe---CCCeEEEEeCCCCeE--EEEecCCCCCCeEEEEEecCCCE
Q psy10778 457 ----LITSLAS-ELRITSVTFSNAPEGVSQNVIVTGH---SDGTIQLWSGYKLAH--LLTLNTNVALPVIAVTYSCDSQH 526 (556)
Q Consensus 457 ----~i~~~~~-~~~i~~i~~s~~pdg~~~~~l~tg~---~dg~I~iwd~~~~~~--~~~~~~~h~~~V~~l~~s~dg~~ 526 (556)
....... .....-+... .+ .+++... .++.|...++..... ...+-..+...+..-.++..+.+
T Consensus 275 ~~~~~~~~~~~~~~~~~~~~~~---~~---~~~~~Tn~~a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~~~~~ 348 (430)
T d1qfma1 275 GILKWVKLIDNFEGEYDYVTNE---GT---VFTFKTNRHSPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACVRSNF 348 (430)
T ss_dssp SSCCCEEEECSSSSCEEEEEEE---TT---EEEEEECTTCTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEETTTE
T ss_pred cccceeEeecccccceEEEecC---Cc---eeecccCcccccceeEEecCCCCccccceEEecccCcceeeeEEEEECCE
Confidence 1112222 1222222222 22 3444333 245666666654321 12332234444554455544555
Q ss_pred EEEE-cCCC--cEEEEEcCCCCC
Q psy10778 527 LYAS-NTEG--LVIIWESSSHNR 546 (556)
Q Consensus 527 l~sg-s~Dg--~V~vwdl~~~~~ 546 (556)
|+.. ..++ .|+++++.+++.
T Consensus 349 lvl~~~~~~~~~l~v~~~~~~~~ 371 (430)
T d1qfma1 349 LVLCYLHDVKNTLQLHDLATGAL 371 (430)
T ss_dssp EEEEEEETTEEEEEEEETTTCCE
T ss_pred EEEEEEcCCEeEEEEEECCCCcE
Confidence 5544 4554 578898887654
|
| >d1zgka1 b.68.11.1 (A:322-609) Kelch-like ECH-associated protein 1, KEAP1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Kelch motif family: Kelch motif domain: Kelch-like ECH-associated protein 1, KEAP1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.39 E-value=1.7 Score=38.67 Aligned_cols=149 Identities=7% Similarity=-0.046 Sum_probs=70.8
Q ss_pred CCCEEEEEcCCCc-----EEEEeCCCCeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCCCCeEEEEEeCCcEEEE
Q psy10778 386 GFSVAVSSSEDGT-----CLLWDINTIGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTGGSILRLHTINAQLITS 460 (556)
Q Consensus 386 ~~~~l~sgs~Dg~-----I~iwdl~~~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~d~~I~iwdi~g~~i~~ 460 (556)
++++++.++.++. +..+|..+......-..+. ...-..+... ++..++.++.........+..||........
T Consensus 101 ~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~r~~~~~~~~-~~~~~~~GG~~~~~~~~~~~~~d~~~~~~~~ 178 (288)
T d1zgka1 101 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLT-RRIGVGVAVL-NRLLYAVGGFDGTNRLNSAECYYPERNEWRM 178 (288)
T ss_dssp TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSS-CCBSCEEEEE-TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred ceeeEEecceecccccceeeeeccccCcccccccccc-ccccceeeee-eecceEecCcccccccceEEEeecccccccc
Confidence 5666666554433 4456776654432221101 1111122222 3345555543322234567888876443333
Q ss_pred eec---CCCeEEEEEeeCCCCCcceEEEEEeCC-----CeEEEEeCCCCeEEEEecCCCCCCe-EEEEEecCCCEEEEEc
Q psy10778 461 LAS---ELRITSVTFSNAPEGVSQNVIVTGHSD-----GTIQLWSGYKLAHLLTLNTNVALPV-IAVTYSCDSQHLYASN 531 (556)
Q Consensus 461 ~~~---~~~i~~i~~s~~pdg~~~~~l~tg~~d-----g~I~iwd~~~~~~~~~~~~~h~~~V-~~l~~s~dg~~l~sgs 531 (556)
... .....+++.. .+ .+++.|+.+ .....+|..+.+....-. ...... .+++ ..++++++.|+
T Consensus 179 ~~~~~~~~~~~~~~~~---~~---~i~i~GG~~~~~~~~~~~~~~~~~~~~~~~~~-~p~~r~~~~~~-~~~~~l~v~GG 250 (288)
T d1zgka1 179 ITAMNTIRSGAGVCVL---HN---CIYAAGGYDGQDQLNSVERYDVETETWTFVAP-MKHRRSALGIT-VHQGRIYVLGG 250 (288)
T ss_dssp CCCCSSCCBSCEEEEE---TT---EEEEECCBCSSSBCCCEEEEETTTTEEEECCC-CSSCCBSCEEE-EETTEEEEECC
T ss_pred ccccccccccccccce---ee---eEEEecCccccccccceeeeeecceeeecccC-ccCcccceEEE-EECCEEEEEec
Confidence 321 1222333433 34 567776544 346677776655433221 111111 1233 23678888877
Q ss_pred CCC-----cEEEEEcCCC
Q psy10778 532 TEG-----LVIIWESSSH 544 (556)
Q Consensus 532 ~Dg-----~V~vwdl~~~ 544 (556)
.++ .+.+||+.+.
T Consensus 251 ~~~~~~~~~v~~yd~~~~ 268 (288)
T d1zgka1 251 YDGHTFLDSVECYDPDTD 268 (288)
T ss_dssp BCSSCBCCEEEEEETTTT
T ss_pred CCCCeecceEEEEECCCC
Confidence 654 3788998873
|
| >d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: Serum paraoxonase/arylesterase 1, PON1 domain: Serum paraoxonase/arylesterase 1, PON1 species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]
Probab=90.06 E-value=7.2 Score=36.03 Aligned_cols=140 Identities=9% Similarity=-0.027 Sum_probs=78.7
Q ss_pred ccCCC-EEEEE---cCCCcEEEEeCCCC----eEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCc----------CCC
Q psy10778 384 CAGFS-VAVSS---SEDGTCLLWDINTI----GYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTK----------TGG 445 (556)
Q Consensus 384 s~~~~-~l~sg---s~Dg~I~iwdl~~~----~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~----------~~d 445 (556)
..++. +|++. ....+|-++++... ..+.++..+. ....+.+++..++..+++-..... -..
T Consensus 107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~-~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~ 185 (340)
T d1v04a_ 107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKL-LPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGL 185 (340)
T ss_dssp CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTT-CSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTC
T ss_pred cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCcc-ccCccceEEecCCCEEEecCccCcChhhhhhhHhhcC
Confidence 45565 34443 34567888877533 2344555422 456789999998887777311000 011
Q ss_pred CeEEEEEeCCcEEEE-eecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCe---EEEEecCCCCCCeEEEEEe
Q psy10778 446 SILRLHTINAQLITS-LASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLA---HLLTLNTNVALPVIAVTYS 521 (556)
Q Consensus 446 ~~I~iwdi~g~~i~~-~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~---~~~~~~~~h~~~V~~l~~s 521 (556)
+.-.+|..+++.... ...-...+.|+++ +++. .++++-+..++|+.|++...+ ....+. -...+-.+.+.
T Consensus 186 ~~g~v~~~~~~~~~~~~~~l~~pNGI~~s--~d~~--~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~--l~~~pDNi~~d 259 (340)
T d1v04a_ 186 AWSFVTYYSPNDVRVVAEGFDFANGINIS--PDGK--YVYIAELLAHKIHVYEKHANWTLTPLRVLS--FDTLVDNISVD 259 (340)
T ss_dssp CCEEEEEECSSCEEEEEEEESSEEEEEEC--TTSS--EEEEEEGGGTEEEEEEECTTSCEEEEEEEE--CSSEEEEEEEC
T ss_pred CceeEEEEcCCceEEEcCCCCccceeEEC--CCCC--EEEEEeCCCCeEEEEEeCCCcccceEEEec--CCCCCCccEEe
Confidence 233444444322222 2344678999999 8872 355566678899999886433 222232 34567778887
Q ss_pred c-CCCEEEEE
Q psy10778 522 C-DSQHLYAS 530 (556)
Q Consensus 522 ~-dg~~l~sg 530 (556)
+ +|.+.+++
T Consensus 260 ~~~g~lwva~ 269 (340)
T d1v04a_ 260 PVTGDLWVGC 269 (340)
T ss_dssp TTTCCEEEEE
T ss_pred cCCCEEEEEE
Confidence 6 44444443
|
| >d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Prolyl oligopeptidase, N-terminal domain domain: Prolyl oligopeptidase, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=89.19 E-value=9.6 Score=36.21 Aligned_cols=231 Identities=10% Similarity=0.006 Sum_probs=115.3
Q ss_pred ccCCCeEEEEeCCCCCCcceEcCCCCCceEEEEEcCCCCEEEEEeCC----------------CcEEEEEeeeccCcccc
Q psy10778 299 NECDNLIRLKMSKELPATPVIRPPLGATIATATTAPDCHTLWLGLTS----------------GNILVYEYELNASTNKI 362 (556)
Q Consensus 299 gs~Dg~I~lw~~~~~~~~~~~~~~h~~~V~~i~~s~dg~~l~tgs~D----------------g~I~vwd~~~~~~~~~~ 362 (556)
|+.--.|++.|+.+++.+.... . ......++|.+|++.|+-...+ ..|..+.+.+...
T Consensus 147 G~e~~~l~v~Dl~tg~~~~~~i-~-~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~~~~v~~h~lgt~~~---- 220 (430)
T d1qfma1 147 GSDWVTIKFMKVDGAKELPDVL-E-RVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQS---- 220 (430)
T ss_dssp TCSCEEEEEEETTTTEEEEEEE-E-EECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGG----
T ss_pred cCchheeEEeccCcceeccccc-c-cccccceEEcCCCCEEEEEEeccccCcccccccccCCcceEEEEECCCCcc----
Confidence 3444679999999987654321 1 1112468899999987754432 1455555544311
Q ss_pred cccCCCeEeeCCC--ccEEEEEEccCCCEEEEEc---CCCcEEEE--eCCCCe--------EEEEeCCCCCCCCeeEEEE
Q psy10778 363 EFCKPPTILLGHS--ACVTDLYLCAGFSVAVSSS---EDGTCLLW--DINTIG--------YIREIPCVDPNTPVSHVTM 427 (556)
Q Consensus 363 ~~~~~~~~l~~h~--~~V~~l~~s~~~~~l~sgs---~Dg~I~iw--dl~~~~--------~v~~l~~~h~~~~V~~l~~ 427 (556)
.....+.... ..+..+..+.++++++... .+....+| |+.... ....+.. . ......+.
T Consensus 221 ---~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~- 294 (430)
T d1qfma1 221 ---EDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLIDN-F-EGEYDYVT- 294 (430)
T ss_dssp ---GCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECS-S-SSCEEEEE-
T ss_pred ---ccccccccccCCceEEeeeccCCcceeeEEeeccCCccEEEEEeeCCCcccccccccceeEeecc-c-ccceEEEe-
Confidence 1122333332 3466778889998765432 23334444 543211 1222322 1 22222222
Q ss_pred eCCCCeEEEEeecCcCCCCeEEEEEeC-C---cEEEEee-cCCCeEEEEEeeCCCCCcceEEEEEeCCC--eEEEEeCCC
Q psy10778 428 SETNGEIASVLQTTKTGGSILRLHTIN-A---QLITSLA-SELRITSVTFSNAPEGVSQNVIVTGHSDG--TIQLWSGYK 500 (556)
Q Consensus 428 sp~~~~i~s~s~~~~~~d~~I~iwdi~-g---~~i~~~~-~~~~i~~i~~s~~pdg~~~~~l~tg~~dg--~I~iwd~~~ 500 (556)
+ .+..+...+... ..++.|...++. . .....+. +...+..-.++. ..+ .+++....++ .|++++..+
T Consensus 295 ~-~~~~~~~~Tn~~-a~~~~L~~~~~~~~~~~~w~~vi~~~~~~~~~~~~~~-~~~---~lvl~~~~~~~~~l~v~~~~~ 368 (430)
T d1qfma1 295 N-EGTVFTFKTNRH-SPNYRLINIDFTDPEESKWKVLVPEHEKDVLEWVACV-RSN---FLVLCYLHDVKNTLQLHDLAT 368 (430)
T ss_dssp E-ETTEEEEEECTT-CTTCEEEEEETTBCCGGGCEEEECCCSSCEEEEEEEE-TTT---EEEEEEEETTEEEEEEEETTT
T ss_pred c-CCceeecccCcc-cccceeEEecCCCCccccceEEecccCcceeeeEEEE-ECC---EEEEEEEcCCEeEEEEEECCC
Confidence 2 334444333211 144666666664 1 1112222 233343322221 223 3444444554 588899887
Q ss_pred CeEEEEecCCCCCCeEEEEEecCCCEEEEEc----CCCcEEEEEcCCCCCcC
Q psy10778 501 LAHLLTLNTNVALPVIAVTYSCDSQHLYASN----TEGLVIIWESSSHNRTP 548 (556)
Q Consensus 501 ~~~~~~~~~~h~~~V~~l~~s~dg~~l~sgs----~Dg~V~vwdl~~~~~~~ 548 (556)
++...... ...+.|..+...++...+...- .-.++.-+|+.+++..+
T Consensus 369 ~~~~~~~~-~~~~sv~~~~~~~~~~~~~~~~ss~~tP~~~y~~Dl~t~~~~~ 419 (430)
T d1qfma1 369 GALLKIFP-LEVGSVVGYSGQKKDTEIFYQFTSFLSPGIIYHCDLTKEELEP 419 (430)
T ss_dssp CCEEEEEC-CCSSEEEEEECCTTCSEEEEEEECSSCCCEEEEEETTSSSCCC
T ss_pred CcEEEecC-CCCceEeeccCCCCCCEEEEEEcCCCCCCeEEEEECCCCCcce
Confidence 77655544 3345565555555554443322 23789999999876554
|
| >d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Thermostable phytase (3-phytase) family: Thermostable phytase (3-phytase) domain: Thermostable phytase (3-phytase) species: Bacillus amyloliquefaciens [TaxId: 1390]
Probab=89.19 E-value=8.7 Score=35.71 Aligned_cols=190 Identities=14% Similarity=0.126 Sum_probs=109.7
Q ss_pred CCCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc------CCCEEEEEc-C-CC--cEEEEe
Q psy10778 334 PDCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA------GFSVAVSSS-E-DG--TCLLWD 403 (556)
Q Consensus 334 ~dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~------~~~~l~sgs-~-Dg--~I~iwd 403 (556)
|+..+++...+.+-|.+||+... .+..+. .+.+..|..-. ...-++.++ . ++ +|.+|.
T Consensus 38 p~~SlI~gTdK~~Gl~vYdL~G~----------~l~~~~--~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~ 105 (353)
T d1h6la_ 38 PQNSKLITTNKKSGLAVYSLEGK----------MLHSYH--TGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYA 105 (353)
T ss_dssp GGGCEEEEEETTSCCEEEETTCC----------EEEECC--SSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEE
T ss_pred cCccEEEEEcCcCCEEEEcCCCc----------EEEecc--cCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEE
Confidence 34456666667777999998632 222222 34555554432 222344444 2 23 577787
Q ss_pred CCC-CeEEEEeCCCC-----CCCCeeEEEE--eCCCC-eEEEEeecCcCCCCeEEEEEeC----C----cEEEEeecCCC
Q psy10778 404 INT-IGYIREIPCVD-----PNTPVSHVTM--SETNG-EIASVLQTTKTGGSILRLHTIN----A----QLITSLASELR 466 (556)
Q Consensus 404 l~~-~~~v~~l~~~h-----~~~~V~~l~~--sp~~~-~i~s~s~~~~~~d~~I~iwdi~----g----~~i~~~~~~~~ 466 (556)
+.. ...+..+..+. ....+..+++ ++..+ ..+.... .+|.+..|.+. + ++++.+.....
T Consensus 106 id~~~~~l~~~~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~----k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q 181 (353)
T d1h6la_ 106 IDGKNGTLQSITDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTG----KEGEFEQYELNADKNGYISGKKVRAFKMNSQ 181 (353)
T ss_dssp EETTTTEEEECSCSSSCEECSSSSCCCEEEEECTTTCCEEEEEEC----SSSEEEEEEEEECTTSSEEEEEEEEEECSSC
T ss_pred ecCcccccccccccccccccccCcceEEEEEecCCCCeEEEEEEc----CCceEEEEEEEcCCCCceeeEeeeccCCCCc
Confidence 652 33444443200 0123566666 66544 3344432 68888888762 3 35566677888
Q ss_pred eEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCC-----CCeEEEEecC-CCCCCeEEEEEec--C--CCEEEEEcCCCcE
Q psy10778 467 ITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGY-----KLAHLLTLNT-NVALPVIAVTYSC--D--SQHLYASNTEGLV 536 (556)
Q Consensus 467 i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~-----~~~~~~~~~~-~h~~~V~~l~~s~--d--g~~l~sgs~Dg~V 536 (556)
+..|.+. .+. ..|..+-++..|..++.. .+..+..... ....-+..|+.-. + |-+|+|.-.+++.
T Consensus 182 ~EGCVvD--de~---~~LyisEE~~Giw~~~a~~~~~~~~~~i~~~~g~~l~~D~EGlaiy~~~~~~GylivSsQG~n~f 256 (353)
T d1h6la_ 182 TEGMAAD--DEY---GSLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTPDIEGLTIYYAADGKGYLLASSQGNSSY 256 (353)
T ss_dssp EEEEEEE--TTT---TEEEEEETTTEEEEEESSTTSCSCCEEEEECSSSSCCSCEEEEEEEECGGGCEEEEEEEGGGTEE
T ss_pred cceEEEe--CCC---CcEEEecCccceEEEEeccCCCccceeeecccCccccCCccccEEEEcCCCCeEEEEEcCCCCeE
Confidence 9999999 666 688888888777666653 2233333332 2356677777543 3 3345555567889
Q ss_pred EEEEcCCC
Q psy10778 537 IIWESSSH 544 (556)
Q Consensus 537 ~vwdl~~~ 544 (556)
.|||....
T Consensus 257 ~vydr~~~ 264 (353)
T d1h6la_ 257 AIYERQGQ 264 (353)
T ss_dssp EEEESSTT
T ss_pred EEEecCCC
Confidence 99999763
|
| >d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nucleoporin domain family: Nucleoporin domain domain: Nucleoporin NUP159 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=84.98 E-value=16 Score=34.24 Aligned_cols=137 Identities=13% Similarity=0.077 Sum_probs=85.6
Q ss_pred ccEEEEEEccCCCEEEEEcCCCcEEEEeCCC-----------CeEEEEeCCCCCCCCeeEEEEeCCCCeEEEEeecCcCC
Q psy10778 376 ACVTDLYLCAGFSVAVSSSEDGTCLLWDINT-----------IGYIREIPCVDPNTPVSHVTMSETNGEIASVLQTTKTG 444 (556)
Q Consensus 376 ~~V~~l~~s~~~~~l~sgs~Dg~I~iwdl~~-----------~~~v~~l~~~h~~~~V~~l~~sp~~~~i~s~s~~~~~~ 444 (556)
....-++++....+++.|+.++ ++|-.+.. ......... ..|..++++.+ .+++..
T Consensus 37 ~~~~LLAVsn~~GLl~aa~~~~-l~V~~t~~l~~~~~~~~~~~~~~~~~~i----p~v~~vafs~d--~l~v~~------ 103 (381)
T d1xipa_ 37 ASLQNLDISNSKSLFVAASGSK-AVVGELQLLRDHITSDSTPLTFKWEKEI----PDVIFVCFHGD--QVLVST------ 103 (381)
T ss_dssp SCCBCEEEETTTTEEEEEETTE-EEEEEHHHHHHHHHSSSCCCCCSEEEEC----TTEEEEEEETT--EEEEEE------
T ss_pred cccceEEEeCCCCEEEEECCCE-EEEEEHHHHHHHhhccCCCCcceeccCC----CCeEEEEeeCC--EEEEEe------
Confidence 3455688888888888888776 55665321 111122222 34888999754 455543
Q ss_pred CCeEEEEEeC--CcEEEEeecCCCeEEEEEeeCCCCCcceEEEEEeCCCeEEEEeCCCCeEEEEecC----CCCCCeEEE
Q psy10778 445 GSILRLHTIN--AQLITSLASELRITSVTFSNAPEGVSQNVIVTGHSDGTIQLWSGYKLAHLLTLNT----NVALPVIAV 518 (556)
Q Consensus 445 d~~I~iwdi~--g~~i~~~~~~~~i~~i~~s~~pdg~~~~~l~tg~~dg~I~iwd~~~~~~~~~~~~----~h~~~V~~l 518 (556)
++.+..++.. ......-.....+..+.+. |. .++....+|.+.++++..++....... .-.+.+.++
T Consensus 104 ~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~--p~-----~~~l~~~~~~~~~~~l~~~~~~~~~~~v~~~~~~~~~~~v 176 (381)
T d1xipa_ 104 RNALYSLDLEELSEFRTVTSFEKPVFQLKNV--NN-----TLVILNSVNDLSALDLRTKSTKQLAQNVTSFDVTNSQLAV 176 (381)
T ss_dssp SSEEEEEESSSTTCEEEEEECSSCEEEEEEC--SS-----EEEEEETTSEEEEEETTTCCEEEEEESEEEEEECSSEEEE
T ss_pred CCCEEEEEeeccccccccccccccccceecC--Cc-----eeEEEecCCCEEEEEeccCccccccCCcceEEecCCceEE
Confidence 5677777775 2322222345678888877 54 456666789999999988764332210 113668888
Q ss_pred EEecCCCEEEEEcC
Q psy10778 519 TYSCDSQHLYASNT 532 (556)
Q Consensus 519 ~~s~dg~~l~sgs~ 532 (556)
+|++.|..++++..
T Consensus 177 ~ws~kgkq~v~~~g 190 (381)
T d1xipa_ 177 LLKDRSFQSFAWRN 190 (381)
T ss_dssp EETTSCEEEEEEET
T ss_pred EEeCCcEEEEEeCC
Confidence 89888888887743
|
| >d1jtdb_ b.69.5.2 (B:) beta-lactamase inhibitor protein-II, BLIP-II {Streptomyces exfoliatus [TaxId: 1905]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: RCC1/BLIP-II family: beta-lactamase inhibitor protein-II, BLIP-II domain: beta-lactamase inhibitor protein-II, BLIP-II species: Streptomyces exfoliatus [TaxId: 1905]
Probab=83.24 E-value=3 Score=37.26 Aligned_cols=30 Identities=20% Similarity=0.160 Sum_probs=18.4
Q ss_pred CCceEEEEEcCCCCEEEEEeCCCcEEEEEeeec
Q psy10778 324 GATIATATTAPDCHTLWLGLTSGNILVYEYELN 356 (556)
Q Consensus 324 ~~~V~~i~~s~dg~~l~tgs~Dg~I~vwd~~~~ 356 (556)
...|..++.-.. ..++ -. ||.|..|-....
T Consensus 25 ~~~i~~va~G~~-h~~a-l~-dG~v~~wG~N~~ 54 (273)
T d1jtdb_ 25 QSGVDAIAGGYF-HGLA-LK-GGKVLGWGANLN 54 (273)
T ss_dssp SSSEEEEEECSS-EEEE-EE-TTEEEEEECCTT
T ss_pred CCCcEEEEccCC-EEEE-EE-CCEEEEEeCCCC
Confidence 446888876332 2333 34 899999976544
|
| >d2hu7a1 b.69.7.2 (A:9-321) Acylamino-acid-releasing enzyme, N-terminal donain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Peptidase/esterase 'gauge' domain family: Acylamino-acid-releasing enzyme, N-terminal donain domain: Acylamino-acid-releasing enzyme, N-terminal donain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.18 E-value=13 Score=31.84 Aligned_cols=183 Identities=13% Similarity=0.152 Sum_probs=94.9
Q ss_pred CCCEEEEEeCCCcEEEEEeeeccCcccccccCCCeEeeCCCccEEEEEEcc-CCCEEEE------EcCCCcEEEEeCCCC
Q psy10778 335 DCHTLWLGLTSGNILVYEYELNASTNKIEFCKPPTILLGHSACVTDLYLCA-GFSVAVS------SSEDGTCLLWDINTI 407 (556)
Q Consensus 335 dg~~l~tgs~Dg~I~vwd~~~~~~~~~~~~~~~~~~l~~h~~~V~~l~~s~-~~~~l~s------gs~Dg~I~iwdl~~~ 407 (556)
+.+.++++...|.+.++-+..+. ...-.+.+|....--. .-..+.. |-+-..+.+-++.+.
T Consensus 25 ~d~ll~~~~seG~vni~~l~g~~------------~vkLtkePI~~~~~Pk~~ldfi~f~RDV~kGkE~Hai~~~Nlk~~ 92 (313)
T d2hu7a1 25 GDKLLVVGFSEGSVNAYLYDGGE------------TVKLNREPINSVLDPHYGVGRVILVRDVSKGAEQHALFKVNTSRP 92 (313)
T ss_dssp TTEEEEEEEETTEEEEEEESSSS------------CEECCSSCCSEECEECTTBSEEEEEEECSTTSCCEEEEEEETTST
T ss_pred CCcEEEEEeccceEEEEEEeCCE------------EEEEecccccCcCCCccCcceEEEEeehhcCcceeeEEEEccCCC
Confidence 34588888888999999887651 1111122222111100 0111111 122334556666644
Q ss_pred eEEEEeCCCCCCCCeeEEEEeCCCCeEE-EEeecCcCCCCeEEEEEeCCcEEEEee-----------cCCCeEEEEEeeC
Q psy10778 408 GYIREIPCVDPNTPVSHVTMSETNGEIA-SVLQTTKTGGSILRLHTINAQLITSLA-----------SELRITSVTFSNA 475 (556)
Q Consensus 408 ~~v~~l~~~h~~~~V~~l~~sp~~~~i~-s~s~~~~~~d~~I~iwdi~g~~i~~~~-----------~~~~i~~i~~s~~ 475 (556)
.....+.. ..+++-+...-+++.++ +|+ ......+|-++|..++.+. ....|..+.+-.
T Consensus 93 GEE~~i~s---pk~vRI~S~~yddk~vvF~Ga-----sed~~~LYviegGklrkL~~vPpFsFVtDI~~d~I~G~g~~~- 163 (313)
T d2hu7a1 93 GEEQRLEA---VKPMRILSGVDTGEAVVFTGA-----TEDRVALYALDGGGLRELARLPGFGFVSDIRGDLIAGLGFFG- 163 (313)
T ss_dssp TCEEECTT---SCSBEEEEEEECSSCEEEEEE-----CSSCEEEEEEETTEEEEEEEESSCEEEEEEETTEEEEEEEEE-
T ss_pred CeeeEecC---CceEEEEEeeecCceEEEecc-----cCCceEEEEEeCCceeeeccCCCcceEEeccCCeEEEEeeec-
Confidence 44455555 34455555554555554 555 5667888888743333331 133455555441
Q ss_pred CCCCcceEEEEEe-CCCeEEEEeCCCCeEEE----------------------EecCC-----------------CCCCe
Q psy10778 476 PEGVSQNVIVTGH-SDGTIQLWSGYKLAHLL----------------------TLNTN-----------------VALPV 515 (556)
Q Consensus 476 pdg~~~~~l~tg~-~dg~I~iwd~~~~~~~~----------------------~~~~~-----------------h~~~V 515 (556)
+.. .-+.++. +.|.+++++...|..-. ++... ....|
T Consensus 164 g~~---~sfF~adl~SG~lri~tpkeGS~~~ay~~~gnKV~sdyEt~gEsywit~D~~s~~yerve~P~kd~~sy~p~~I 240 (313)
T d2hu7a1 164 GGR---VSLFTSNLSSGGLRVFDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVEDLELPSKDFSSYRPTAI 240 (313)
T ss_dssp TTE---EEEEEEETTTEEEEEECCSSEEEEEEEECTTSCEEEEEEESSCEEEEEECTTTCCEEECCCSSCHHHHHCCSEE
T ss_pred CCc---ceEEEEecccCCEEEecCCCCcccceeEccCceeeeccCCCCceEEEEEecccCceeeeecCcccceeecceEE
Confidence 111 2234444 47778887764432111 11100 01234
Q ss_pred EEEEEecCCCEEEEEcCCCcEEEEEc
Q psy10778 516 IAVTYSCDSQHLYASNTEGLVIIWES 541 (556)
Q Consensus 516 ~~l~~s~dg~~l~sgs~Dg~V~vwdl 541 (556)
+-+.+.|++++++.+-.||.-.++.-
T Consensus 241 ~~~~Y~Pdd~L~iiakrdG~s~lF~n 266 (313)
T d2hu7a1 241 TWLGYLPDGRLAVVARREGRSAVFID 266 (313)
T ss_dssp EEEEECTTSCEEEEEEETTEEEEEET
T ss_pred EeeeeCCCCcEEEEEecCCchheeec
Confidence 44568899999899999999988874
|