Psyllid ID: psy10861

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------50
MLQRTGSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
cccccccccEEEcccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccHHHHHHccccccccccccccccccccccccccccccHHHHHHHHHcccccccHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHcccccEEEEEEcccHHcccccccccccccccHHHHHHHHccccccccccccccccHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccHHHHHccccccEEEcHHHHHHHHHHHccccccccccccccccccccccccccccccccEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccccccccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccccccccccccccccccc
cccccccccEEEEcccHHHHHcccccEEEEEcccccccccccEcccHHHHHHHHccccccccccHHHHHHcccccccccHHHHHHHcccccccHHcHHHHHHHHHHHcccccccccccccccHHHHHHHcHHHHHHHHHHHccccccccccccccccHHHHHHccccccEEEEccHHHHHHccccccccHHcHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccccccccccccccccHHHHHHHHHcccHHcHEEEccHHHHHHHHHHHHccccccccEEcccccEcccccccccccccEEEEccccccccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccHHHHHHcccccccccccccccEEEccEccccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccccccEEccccccccc
mlqrtgsadlivggssvkktakdsgpallrietdekiglyGFKIHSLAYQLQQNAaanfktpvravsyntgkrrdpqidedyiqdkfnltglneqvpHYRQALDMIldlepvdedyiqdkfnltglneqvpHYRQALDMIldlepgslkmssseeVSWISWFcglrgneffceVDEDYIQdkfnltglneqvpHYRQALDMIldlepddelednpnqsdLIEQASEMLYGLIHARYILTNRGIGQMIEkyqtgdfghcprvycesqpmlpiddelednpnqsdLIEQASEMLYGLIHARYILTNRGIGQMIEkyqtgdfghcprvycesqpmlpiglsdvpgeamvksycpkcmdvytpkssrhhhtdglsdvpgeamvksycpkcmdvytpkssrhhhtdgayfgtgfphmlfmvhpeyrpkrpvnqfvpssrndelednpnqsDLIEQASEMLYGLIHARYILTNRGIGQMIEkyqtgdfghcprvycesqpmlpi
mlqrtgsadlivggssvkktakdsgpalLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVsyntgkrrdpqidEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPssrndelednpnQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCesqpmlpi
MLQRTGSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIHSlayqlqqnaaanFKTPVRAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIldlepddelednpnQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
***************************LLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSYNTG*****QIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP*********EVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDL******************ASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQ*********************ASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT*****************EAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEY*******************************SEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYC********
*********LIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIH******************RAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDED*******************************************ISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
MLQRTGSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYT**********GLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
*****GSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYI*DKFNLTGLNEQVPHYRQALDMILDLE*********EEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHT*GLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
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MLQRTGSADLIVGGSSVKKTAKDSGPALLRIETDEKIGLYGFKIHSLAYQLQQNAAANFKTPVRAVSYNTGKRRDPQIDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPGSLKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query498 2.2.26 [Sep-21-2011]
Q91398215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P28021215 Casein kinase II subunit N/A N/A 0.371 0.860 0.592 2e-83
P67874215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67873215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67872215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67871215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67870215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67869215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P67868215 Casein kinase II subunit yes N/A 0.371 0.860 0.592 2e-83
P08182235 Casein kinase II subunit yes N/A 0.371 0.787 0.581 2e-82
>sp|Q91398|CSK2B_DANRE Casein kinase II subunit beta OS=Danio rerio GN=csnk2b PE=2 SV=1 Back     alignment and function desciption
 Score =  310 bits (794), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 167/282 (59%), Positives = 177/282 (62%), Gaps = 97/282 (34%)

Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDD 209
           MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPD+
Sbjct: 1   MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60

Query: 210 ELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
           ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPML
Sbjct: 61  ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120

Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
           PI   L D P ++                           M++ Y       CP+     
Sbjct: 121 PIG--LSDIPGEA---------------------------MVKLY-------CPK----- 139

Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
                                  CMDVYTPKSSRHHH                       
Sbjct: 140 -----------------------CMDVYTPKSSRHHH----------------------- 153

Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
                     TDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 154 ----------TDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 185
Participates in Wnt signaling. Plays a complex role in regulating the basal catalytic activity of the alpha subunit.
Danio rerio (taxid: 7955)
>sp|P28021|CSK2B_XENLA Casein kinase II subunit beta OS=Xenopus laevis GN=csnk2b PE=1 SV=1 Back     alignment and function description
>sp|P67874|CSK2B_RAT Casein kinase II subunit beta OS=Rattus norvegicus GN=Csnk2b PE=1 SV=1 Back     alignment and function description
>sp|P67873|CSK2B_RABIT Casein kinase II subunit beta OS=Oryctolagus cuniculus GN=CSNK2B PE=2 SV=1 Back     alignment and function description
>sp|P67872|CSK2B_PIG Casein kinase II subunit beta OS=Sus scrofa GN=CSNK2B PE=2 SV=1 Back     alignment and function description
>sp|P67871|CSK2B_MOUSE Casein kinase II subunit beta OS=Mus musculus GN=Csnk2b PE=1 SV=1 Back     alignment and function description
>sp|P67870|CSK2B_HUMAN Casein kinase II subunit beta OS=Homo sapiens GN=CSNK2B PE=1 SV=1 Back     alignment and function description
>sp|P67869|CSK2B_CHICK Casein kinase II subunit beta OS=Gallus gallus GN=CSNK2B PE=2 SV=1 Back     alignment and function description
>sp|P67868|CSK2B_BOVIN Casein kinase II subunit beta OS=Bos taurus GN=CSNK2B PE=1 SV=1 Back     alignment and function description
>sp|P08182|CSK2B_DROME Casein kinase II subunit beta OS=Drosophila melanogaster GN=CkIIbeta PE=2 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
351713144333 Casein kinase II subunit beta [Heterocep 0.441 0.660 0.645 3e-97
301789295235 PREDICTED: casein kinase II subunit beta 0.379 0.804 0.587 6e-83
426352425234 PREDICTED: casein kinase II subunit beta 0.379 0.807 0.587 7e-83
444721101235 Casein kinase II subunit beta [Tupaia ch 0.375 0.795 0.591 7e-83
149028072235 casein kinase 2, beta subunit, isoform C 0.375 0.795 0.591 7e-83
440898775235 Casein kinase II subunit beta [Bos grunn 0.379 0.804 0.587 7e-83
395537127250 PREDICTED: casein kinase II subunit beta 0.379 0.756 0.587 8e-83
148694713236 casein kinase II, beta subunit, isoform 0.375 0.792 0.591 8e-83
281342582219 hypothetical protein PANDA_020408 [Ailur 0.379 0.863 0.587 2e-82
181155215 casein kinase II beta subunit [Homo sapi 0.371 0.860 0.592 9e-82
>gi|351713144|gb|EHB16063.1| Casein kinase II subunit beta [Heterocephalus glaber] Back     alignment and taxonomy information
 Score =  362 bits (928), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 189/293 (64%), Positives = 202/293 (68%), Gaps = 73/293 (24%)

Query: 148 LKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP 207
           +KMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP
Sbjct: 75  VKMSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEP 134

Query: 208 DDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQP 267
           D+ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QP
Sbjct: 135 DEELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQP 194

Query: 268 MLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYC 327
           MLPI   L D P ++                           M++ Y       CP+   
Sbjct: 195 MLPIG--LSDIPGEA---------------------------MVKLY-------CPK--- 215

Query: 328 ESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMV-------- 379
                                    CMDVYTPKSSRHHHTDG     G   +        
Sbjct: 216 -------------------------CMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEK 250

Query: 380 -KSYCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
            +  CPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 251 ERFCCPKCMDVYTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 303

Source: Heterocephalus glaber

Species: Heterocephalus glaber

Genus: Heterocephalus

Family: Bathyergidae

Order: Rodentia

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota
>gi|301789295|ref|XP_002930069.1| PREDICTED: casein kinase II subunit beta-like isoform 1 [Ailuropoda melanoleuca] Back     alignment and taxonomy information
>gi|426352425|ref|XP_004043713.1| PREDICTED: casein kinase II subunit beta isoform 2 [Gorilla gorilla gorilla] gi|119623880|gb|EAX03475.1| casein kinase 2, beta polypeptide, isoform CRA_d [Homo sapiens] gi|355561533|gb|EHH18165.1| hypothetical protein EGK_14715 [Macaca mulatta] gi|355748435|gb|EHH52918.1| hypothetical protein EGM_13453 [Macaca fascicularis] Back     alignment and taxonomy information
>gi|444721101|gb|ELW61854.1| Casein kinase II subunit beta [Tupaia chinensis] Back     alignment and taxonomy information
>gi|149028072|gb|EDL83523.1| casein kinase 2, beta subunit, isoform CRA_b [Rattus norvegicus] Back     alignment and taxonomy information
>gi|440898775|gb|ELR50200.1| Casein kinase II subunit beta [Bos grunniens mutus] Back     alignment and taxonomy information
>gi|395537127|ref|XP_003770556.1| PREDICTED: casein kinase II subunit beta-like, partial [Sarcophilus harrisii] Back     alignment and taxonomy information
>gi|148694713|gb|EDL26660.1| casein kinase II, beta subunit, isoform CRA_c [Mus musculus] Back     alignment and taxonomy information
>gi|281342582|gb|EFB18166.1| hypothetical protein PANDA_020408 [Ailuropoda melanoleuca] gi|417408768|gb|JAA50920.1| Putative casein kinase ii beta subunit, partial [Desmodus rotundus] Back     alignment and taxonomy information
>gi|181155|gb|AAA52123.1| casein kinase II beta subunit [Homo sapiens] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query498
FB|FBgn0000259235 CkIIbeta "Casein kinase II bet 0.263 0.557 0.774 9.1e-88
WB|WBGene00002196234 kin-10 [Caenorhabditis elegans 0.261 0.555 0.714 6.6e-77
UNIPROTKB|P28548234 kin-10 "Casein kinase II subun 0.261 0.555 0.714 6.6e-77
UNIPROTKB|Q5SRQ3228 CSNK2B "Casein kinase II subun 0.263 0.574 0.789 3.8e-53
UNIPROTKB|Q5SRQ6234 CSNK2B "Casein kinase II subun 0.267 0.568 0.785 8.9e-54
UNIPROTKB|K7GQK6235 CSNK2B "Casein kinase II subun 0.267 0.565 0.785 8.9e-54
UNIPROTKB|P67869215 CSNK2B "Casein kinase II subun 0.263 0.609 0.789 3.8e-53
UNIPROTKB|P67868215 CSNK2B "Casein kinase II subun 0.263 0.609 0.789 3.8e-53
UNIPROTKB|E2RP71295 E2RP71 "Uncharacterized protei 0.263 0.444 0.789 3.8e-53
UNIPROTKB|P67870215 CSNK2B "Casein kinase II subun 0.263 0.609 0.789 3.8e-53
FB|FBgn0000259 CkIIbeta "Casein kinase II beta subunit" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 547 (197.6 bits), Expect = 9.1e-88, Sum P(2) = 9.1e-88
 Identities = 103/133 (77%), Positives = 111/133 (83%)

Query:   150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXXXXXXX 209
             MSSSEEVSW++WFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVP+YRQALDMI       
Sbjct:     1 MSSSEEVSWVTWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPNYRQALDMILDLEPED 60

Query:   210 XXXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
                    QSD+ EQA+EMLYGLIHARYILTNRGI QMIEKYQTGDFGHCPRVYCESQPML
Sbjct:    61 ELEDNPLQSDMTEQAAEMLYGLIHARYILTNRGIAQMIEKYQTGDFGHCPRVYCESQPML 120

Query:   270 PIDDELEDNPNQS 282
             P+   L D P ++
Sbjct:   121 PLG--LSDIPGEA 131
GO:0006468 "protein phosphorylation" evidence=NAS;IDA
GO:0005829 "cytosol" evidence=IDA
GO:0005956 "protein kinase CK2 complex" evidence=NAS;IDA
GO:0005634 "nucleus" evidence=IDA
GO:0004674 "protein serine/threonine kinase activity" evidence=IDA
GO:0019887 "protein kinase regulator activity" evidence=ISS;NAS;IDA
GO:0004672 "protein kinase activity" evidence=NAS
GO:0016319 "mushroom body development" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0007622 "rhythmic behavior" evidence=TAS
GO:0008062 "eclosion rhythm" evidence=TAS
GO:0007623 "circadian rhythm" evidence=IMP
GO:0045475 "locomotor rhythm" evidence=IMP
GO:0022008 "neurogenesis" evidence=IMP
WB|WBGene00002196 kin-10 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|P28548 kin-10 "Casein kinase II subunit beta" [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SRQ3 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|Q5SRQ6 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|K7GQK6 CSNK2B "Casein kinase II subunit beta" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P67869 CSNK2B "Casein kinase II subunit beta" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|P67868 CSNK2B "Casein kinase II subunit beta" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|E2RP71 E2RP71 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|P67870 CSNK2B "Casein kinase II subunit beta" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P67869CSK2B_CHICKNo assigned EC number0.59210.37140.8604yesN/A
P67868CSK2B_BOVINNo assigned EC number0.59210.37140.8604yesN/A
P08182CSK2B_DROMENo assigned EC number0.58150.37140.7872yesN/A
P28548CSK2B_CAEELNo assigned EC number0.51410.36940.7863yesN/A
Q91398CSK2B_DANRENo assigned EC number0.59210.37140.8604yesN/A
Q54PF1CK2B_DICDINo assigned EC number0.5250.23690.4402yesN/A
P67870CSK2B_HUMANNo assigned EC number0.59210.37140.8604yesN/A
P67871CSK2B_MOUSENo assigned EC number0.59210.37140.8604yesN/A
P67872CSK2B_PIGNo assigned EC number0.59210.37140.8604yesN/A
P67873CSK2B_RABITNo assigned EC number0.59210.37140.8604yesN/A
P67874CSK2B_RATNo assigned EC number0.59210.37140.8604yesN/A

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
smart01085184 smart01085, CK_II_beta, Casein kinase II regulator 1e-96
pfam01214183 pfam01214, CK_II_beta, Casein kinase II regulatory 1e-87
PTZ00396251 PTZ00396, PTZ00396, Casein kinase II subunit beta; 4e-67
COG5041242 COG5041, SKB2, Casein kinase II, beta subunit [Sig 4e-65
smart01085184 smart01085, CK_II_beta, Casein kinase II regulator 2e-28
pfam01214183 pfam01214, CK_II_beta, Casein kinase II regulatory 1e-26
PTZ00396 251 PTZ00396, PTZ00396, Casein kinase II subunit beta; 6e-21
COG5041 242 COG5041, SKB2, Casein kinase II, beta subunit [Sig 1e-19
smart01085184 smart01085, CK_II_beta, Casein kinase II regulator 3e-17
smart01085184 smart01085, CK_II_beta, Casein kinase II regulator 5e-17
pfam01214183 pfam01214, CK_II_beta, Casein kinase II regulatory 3e-16
pfam01214183 pfam01214, CK_II_beta, Casein kinase II regulatory 4e-15
PTZ00396251 PTZ00396, PTZ00396, Casein kinase II subunit beta; 2e-11
COG5041242 COG5041, SKB2, Casein kinase II, beta subunit [Sig 1e-09
COG5041242 COG5041, SKB2, Casein kinase II, beta subunit [Sig 1e-09
>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information 
 Score =  289 bits (742), Expect = 1e-96
 Identities = 113/275 (41%), Positives = 145/275 (52%), Gaps = 97/275 (35%)

Query: 157 SWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPN 216
           SWI WFC L+GNEFFCEVDED+I+D FNLTGLN +VP+YR+ALD+ILDLEPDD+L+++ +
Sbjct: 1   SWIDWFCSLKGNEFFCEVDEDFIEDDFNLTGLNSEVPNYREALDLILDLEPDDDLDEDAS 60

Query: 217 QSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELE 276
           Q  LIE ++E+LYGLIHARYILT RG+  M+EKY+ GDFG CPRV+C  QP+LP+   L 
Sbjct: 61  QKSLIESSAELLYGLIHARYILTPRGLALMLEKYKRGDFGTCPRVFCNGQPLLPVG--LS 118

Query: 277 DNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIG 336
           D P +                                          ++YC         
Sbjct: 119 DVPGK---------------------------------------STVKLYC--------- 130

Query: 337 LSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSSR 396
                         P+C DVY                                 TPKSSR
Sbjct: 131 --------------PRCQDVY---------------------------------TPKSSR 143

Query: 397 HHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
           H + DGA+FGT FPH+  M +PE  PK+P  Q++P
Sbjct: 144 HANIDGAFFGTSFPHLFLMTYPELIPKKPKEQYIP 178

Length = 184
>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|198153 smart01085, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|216369 pfam01214, CK_II_beta, Casein kinase II regulatory subunit Back     alignment and domain information
>gnl|CDD|240400 PTZ00396, PTZ00396, Casein kinase II subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>gnl|CDD|227374 COG5041, SKB2, Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 498
KOG3092|consensus216 100.0
PTZ00396251 Casein kinase II subunit beta; Provisional 100.0
COG5041242 SKB2 Casein kinase II, beta subunit [Signal transd 100.0
PF01214184 CK_II_beta: Casein kinase II regulatory subunit; I 100.0
KOG3092|consensus216 100.0
PTZ00396251 Casein kinase II subunit beta; Provisional 100.0
PF01214184 CK_II_beta: Casein kinase II regulatory subunit; I 100.0
COG5041242 SKB2 Casein kinase II, beta subunit [Signal transd 99.84
PF06044254 DRP: Dam-replacing family; InterPro: IPR010324 Dam 89.11
PF01927147 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 T 83.32
>KOG3092|consensus Back     alignment and domain information 
Probab=100.00  E-value=1.2e-80  Score=587.11  Aligned_cols=199  Identities=73%  Similarity=1.308  Sum_probs=173.1

Q ss_pred             CCcccchhHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhhh
Q psy10861        151 SSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYG  230 (498)
Q Consensus       151 ssse~~sWI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LYG  230 (498)
                      +++++.|||+|||+++|||||||||+|||+|+|||+||+.+||+|++|||+|||.+++++++++++              
T Consensus         2 s~see~sWI~wFc~~~GnEffceVdeeyIqD~FNltgL~~~Vp~y~~ald~ILD~~~~~~~e~~~~--------------   67 (216)
T KOG3092|consen    2 SSSEEVSWISWFCGLRGNEFFCEVDEEYIQDRFNLTGLSEQVPNYRQALDLILDLEPDDELEDNAE--------------   67 (216)
T ss_pred             CcccccchHHHHhcCCCCeeeEecCHHHhhhhhccccccccCchHHHHHHHhhcCCCCcccccchh--------------
Confidence            456777899999999999999999999999999999999999999999999999988776655433              


Q ss_pred             hhhhhhhhccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHHH
Q psy10861        231 LIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQM  310 (498)
Q Consensus       231 LIHARYIlT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~m  310 (498)
                                                                        ++|+||.+|++||||||||||+|++||++|
T Consensus        68 --------------------------------------------------~~~~iE~aae~LYGLIHaRYIlT~~Gl~~M   97 (216)
T KOG3092|consen   68 --------------------------------------------------QSELIESAAEMLYGLIHARYILTNRGLAAM   97 (216)
T ss_pred             --------------------------------------------------HHHHHHHHHHHHHHhhhheeeechHHHHHH
Confidence                                                              235566666666667777777777777777


Q ss_pred             HHhhcCCCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccc
Q psy10861        311 IEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVY  390 (498)
Q Consensus       311 ~~Ky~~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  390 (498)
                      .+||++++||+||||+|++|+|||+|+||+||+++||||||+|+|||.|                               
T Consensus        98 ~eKy~~~dFG~CPRV~C~~q~~LPvGLsDipg~~~VklYCP~C~dvY~P-------------------------------  146 (216)
T KOG3092|consen   98 LEKYKNGDFGRCPRVYCCGQPVLPVGLSDIPGKSTVKLYCPSCEDVYIP-------------------------------  146 (216)
T ss_pred             HHHHhcCCCCcCCcccccCCccccccccCCCCcceEEEeCCCccccccc-------------------------------
Confidence            7777777888888888889999999999999999999999999999995                               


Q ss_pred             cCCCCCCCCccccccCCchhhHHHhhcCCCCCCCCCCCcCCCcCCCccCCCCCcch
Q psy10861        391 TPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNPNQSD  446 (498)
Q Consensus       391 ~p~~~~~~~iDGa~fG~sFph~f~~~~p~~~p~~~~~~~~p~I~GFKLhdnpnQSD  446 (498)
                        ++||+.+||||||||||||||||+||+++|+++.++|||||||||||+.+.+..
T Consensus       147 --~ssr~~~iDGa~fGtsFPhmff~~~p~l~P~r~~~~yvPriyGFkih~~a~~~~  200 (216)
T KOG3092|consen  147 --KSSRHGNIDGAYFGTSFPHMFFMTHPELRPKRPTEQYVPRIYGFKIHKPAYTGP  200 (216)
T ss_pred             --ccccccccccchhcCCCchhHHHhccccCCCcchhhhcchheeeeeCchhhccH
Confidence              455677899999999999999999999999999999999999999999875555

>PTZ00396 Casein kinase II subunit beta; Provisional Back     alignment and domain information
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>KOG3092|consensus Back     alignment and domain information
>PTZ00396 Casein kinase II subunit beta; Provisional Back     alignment and domain information
>PF01214 CK_II_beta: Casein kinase II regulatory subunit; InterPro: IPR000704 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases Back     alignment and domain information
>COG5041 SKB2 Casein kinase II, beta subunit [Signal transduction mechanisms / Cell division and chromosome partitioning / Transcription] Back     alignment and domain information
>PF06044 DRP: Dam-replacing family; InterPro: IPR010324 Dam-replacing protein (DRP) is a restriction endonuclease that is flanked by pseudo-transposable small repeat elements Back     alignment and domain information
>PF01927 Mut7-C: Mut7-C RNAse domain; InterPro: IPR002782 This prokaryotic family of proteins have no known function Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
1jwh_C215 Crystal Structure Of Human Protein Kinase Ck2 Holoe 2e-74
1jwh_C215 Crystal Structure Of Human Protein Kinase Ck2 Holoe 1e-28
3eed_A193 Crystal Structure Of Human Protein Kinase Ck2 Regul 6e-74
3eed_A193 Crystal Structure Of Human Protein Kinase Ck2 Regul 1e-28
1rqf_A184 Structure Of Ck2 Beta Subunit Crystallized In The P 3e-70
1rqf_A184 Structure Of Ck2 Beta Subunit Crystallized In The P 1e-28
1qf8_A182 Truncated Form Of Casein Kinase Ii Beta Subunit (2- 3e-66
1qf8_A182 Truncated Form Of Casein Kinase Ii Beta Subunit (2- 2e-26
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215 Back     alignment and structure 
Iteration: 1

 Score =  276 bits (705), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 154/282 (54%), Positives = 163/282 (57%), Gaps = 97/282 (34%)
Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMIXXXXXXX 209
           MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMI       
Sbjct: 1   MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60
Query: 210 XXXXXXXQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
                  QSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPML
Sbjct: 61  ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120
Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
           PI   L D P ++                           M++ Y       CP+     
Sbjct: 121 PIG--LSDIPGEA---------------------------MVKLY-------CPK----- 139
Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
                                  CMDVYTPKSSRHHH                       
Sbjct: 140 -----------------------CMDVYTPKSSRHHH----------------------- 153
Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
                     TDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 154 ----------TDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 185
>pdb|1JWH|C Chain C, Crystal Structure Of Human Protein Kinase Ck2 Holoenzyme Length = 215 Back     alignment and structure
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193 Back     alignment and structure
>pdb|3EED|A Chain A, Crystal Structure Of Human Protein Kinase Ck2 Regulatory Subunit (Ck2beta; Mutant 1-193) Length = 193 Back     alignment and structure
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184 Back     alignment and structure
>pdb|1RQF|A Chain A, Structure Of Ck2 Beta Subunit Crystallized In The Presence Of A P21waf1 Peptide Length = 184 Back     alignment and structure
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182 Back     alignment and structure
>pdb|1QF8|A Chain A, Truncated Form Of Casein Kinase Ii Beta Subunit (2-182) From Homo Sapiens Length = 182 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query498
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 3e-82
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 2e-23
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 4e-12
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 7e-12
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 5e-81
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 2e-23
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 3e-12
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 5e-12
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-09
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 7e-07
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215 Back     alignment and structure
 Score =  253 bits (647), Expect = 3e-82
 Identities = 167/282 (59%), Positives = 176/282 (62%), Gaps = 97/282 (34%)

Query: 150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDD 209
           MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPD+
Sbjct: 1   MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDE 60

Query: 210 ELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPML 269
           ELEDNPNQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPML
Sbjct: 61  ELEDNPNQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPML 120

Query: 270 PIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCES 329
           PI   L D P ++                                         ++YC  
Sbjct: 121 PIG--LSDIPGEA---------------------------------------MVKLYC-- 137

Query: 330 QPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV 389
                                PKCMDVYT                               
Sbjct: 138 ---------------------PKCMDVYT------------------------------- 145

Query: 390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVP 431
             PKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRP NQFVP
Sbjct: 146 --PKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVP 185
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215 Back     alignment and structure
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215 Back     alignment and structure
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Length = 215 Back     alignment and structure
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182 Back     alignment and structure
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182 Back     alignment and structure
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182 Back     alignment and structure
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Length = 182 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 100.0
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 100.0
4dgl_A215 Casein kinase II subunit beta; protein kinase, tra 100.0
1qf8_A182 Casein kinase II; casein kinase beta subunit (1-18 100.0
4esj_A257 Type-2 restriction enzyme DPNI; restriction endonu 91.96
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Back     alignment and structure
Probab=100.00  E-value=4.5e-79  Score=584.97  Aligned_cols=196  Identities=89%  Similarity=1.499  Sum_probs=159.8

Q ss_pred             CCCcccchhHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhh
Q psy10861        150 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLY  229 (498)
Q Consensus       150 ~ssse~~sWI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LY  229 (498)
                      |||+++.+||+|||+++|||||||||+|||+|+|||+||+++||+|++||++|+|.+++++.+++.              
T Consensus         1 ms~s~~~sWI~wFc~~~gneffceVd~dyI~D~FNL~GL~~~Vp~y~~aLd~Ild~~~~~~~~~~~--------------   66 (215)
T 4dgl_A            1 MSSSEEVSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNP--------------   66 (215)
T ss_dssp             -------CHHHHHHTSTTCTTCCCCCHHHHHSTTTTTTGGGTSSSHHHHHHHHTTC--------CT--------------
T ss_pred             CCCcccCcHHHHHhCCCCCeEEEEeCHHHhcCcccccCchhccccHHHHHHHHcCCCCcchhcccc--------------
Confidence            567788999999999999999999999999999999999999999999999999987654433332              


Q ss_pred             hhhhhhhhhccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHH
Q psy10861        230 GLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQ  309 (498)
Q Consensus       230 GLIHARYIlT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~  309 (498)
                                                                        .+.++++.+|++||||||||||+|++||++
T Consensus        67 --------------------------------------------------~~~~~ie~~A~~LYGLIHARYIlT~~Gl~~   96 (215)
T 4dgl_A           67 --------------------------------------------------NQSDLIEQAAEMLYGLIHARYILTNRGIAQ   96 (215)
T ss_dssp             --------------------------------------------------THHHHHHHHHHHHHHHHHHHHTTSHHHHHH
T ss_pred             --------------------------------------------------hhHHHHHHHHHHHhhhhhHhheecHHHHHH
Confidence                                                              234455555666666666666777777777


Q ss_pred             HHHhhcCCCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCccc
Q psy10861        310 MIEKYQTGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDV  389 (498)
Q Consensus       310 m~~Ky~~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  389 (498)
                      |++||++++||+||||+|++|||||+|+||+||+++||||||+|+|||+|+                             
T Consensus        97 M~eKY~~g~FG~CPRv~C~~q~~LPvGlSD~pg~~~VKlyCP~C~DvY~P~-----------------------------  147 (215)
T 4dgl_A           97 MLEKYQQGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTPK-----------------------------  147 (215)
T ss_dssp             HHHHHHTTTTCBCCBGGGTSCBCEEEESCSSTTSCBEEEECTTTCCEECCS-----------------------------
T ss_pred             HHHHHhcCCCCcCCccccCCCceeccccCCCCCccceeEeCCCcccccCCC-----------------------------
Confidence            777777777788888888999999999999999999999999999999954                             


Q ss_pred             ccCCCCCCCCccccccCCchhhHHHhhcCCCCCCCCCCCcCCCcCCCccCCCC
Q psy10861        390 YTPKSSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPVNQFVPSSRNDELEDNP  442 (498)
Q Consensus       390 ~~p~~~~~~~iDGa~fG~sFph~f~~~~p~~~p~~~~~~~~p~I~GFKLhdnp  442 (498)
                          ++++.+||||||||||||||||+||+++|+++.++|+|||||||||+.+
T Consensus       148 ----s~r~~~iDGAyFGtsFph~f~~~~p~l~p~~~~~~yvPrifGFkih~~a  196 (215)
T 4dgl_A          148 ----SSRHHHTDGAYFGTGFPHMLFMVHPEYRPKRPANQFVPRLYGFKIHPMA  196 (215)
T ss_dssp             ----STTSTTSBGGGTTTTHHHHHHHHCGGGCCCSCSCCCCCEETTEEECTHH
T ss_pred             ----cccccccccceecCcchHHHHHHcccccCCCCCCcccCeEeEEEecHHh
Confidence                4567789999999999999999999999999999999999999999875
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Back     alignment and structure
>4dgl_A Casein kinase II subunit beta; protein kinase, transferase; 3.00A {Homo sapiens} PDB: 2r6m_A 1jwh_C 1ds5_E* Back     alignment and structure
>1qf8_A Casein kinase II; casein kinase beta subunit (1-182), Ser/Thr protein kinase, Zn finger, transferase; HET: MSE; 1.74A {Homo sapiens} SCOP: g.41.4.1 PDB: 3eed_A 1rqf_A Back     alignment and structure
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 498
d1qf8a_173 g.41.4.1 (A:) Casein kinase II beta subunit {Human 2e-80
d1qf8a_173 g.41.4.1 (A:) Casein kinase II beta subunit {Human 7e-26
d1qf8a_173 g.41.4.1 (A:) Casein kinase II beta subunit {Human 3e-13
d1qf8a_173 g.41.4.1 (A:) Casein kinase II beta subunit {Human 2e-12
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  245 bits (628), Expect = 2e-80
 Identities = 156/270 (57%), Positives = 165/270 (61%), Gaps = 97/270 (35%)

Query: 156 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNP 215
           VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPD+ELEDNP
Sbjct: 1   VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNP 60

Query: 216 NQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDEL 275
           NQSDLIEQA+EMLYGLIHARYILTNRGI QM+EKYQ GDFG+CPRVYCE+QPMLPI   L
Sbjct: 61  NQSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQQGDFGYCPRVYCENQPMLPIG--L 118

Query: 276 EDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPI 335
            D P ++                                         ++YC        
Sbjct: 119 SDIPGEA---------------------------------------MVKLYC-------- 131

Query: 336 GLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSS 395
                          PKCMDVY                                 TPKSS
Sbjct: 132 ---------------PKCMDVY---------------------------------TPKSS 143

Query: 396 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP 425
           RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP
Sbjct: 144 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP 173
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 173 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query498
d1qf8a_173 Casein kinase II beta subunit {Human (Homo sapiens 100.0
d1qf8a_173 Casein kinase II beta subunit {Human (Homo sapiens 100.0
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Small proteins
fold: Rubredoxin-like
superfamily: Casein kinase II beta subunit
family: Casein kinase II beta subunit
domain: Casein kinase II beta subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=6.8e-70  Score=505.61  Aligned_cols=173  Identities=95%  Similarity=1.628  Sum_probs=147.3

Q ss_pred             chhHHhhhcCCCCccccccChhhhccccccCCcccccccHHHHHHHHcCCCCCCcccCCCCChhhHHHHHHhhhhhhhhh
Q psy10861        156 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDDELEDNPNQSDLIEQASEMLYGLIHAR  235 (498)
Q Consensus       156 ~sWI~wF~~~~gne~f~eVDeDfI~D~FNL~GL~~~vp~y~~ALdlIld~~~~~~~e~~~~~~~lIe~sAe~LYGLIHAR  235 (498)
                      +|||+|||+++||+||||||+|||+|+|||+||+++|++|++||++|+|.+++++.+++..                   
T Consensus         1 ~sWI~wF~~~~gne~f~~Vd~dyI~D~FNl~GL~~~v~~y~~al~~Ild~~~~~~~~~~~~-------------------   61 (173)
T d1qf8a_           1 VSWISWFCGLRGNEFFCEVDEDYIQDKFNLTGLNEQVPHYRQALDMILDLEPDEELEDNPN-------------------   61 (173)
T ss_dssp             CCHHHHHHHSTTCTTCCCCCHHHHHSGGGGTTGGGTSTTHHHHHHHHTTCCCC------CH-------------------
T ss_pred             CChHHHHhCCCCCeEEEEeCHHHHcCcchhcCchhccccHHHHHHHHhccCCChhhhhhhh-------------------
Confidence            4899999999999999999999999999999999999999999999999876554432221                   


Q ss_pred             hhhccchhhhHHhhhccCCCCCCCccccCCCCCcCCCcccCCCCCCchhHHHHHHHHhhhhhcceeeChhhHHHHHHhhc
Q psy10861        236 YILTNRGIGQMIEKYQTGDFGHCPRVYCESQPMLPIDDELEDNPNQSDLIEQASEMLYGLIHARYILTNRGIGQMIEKYQ  315 (498)
Q Consensus       236 YIlT~rGL~~M~EKY~~gdFG~CPRv~C~~q~vLPVG~~Lsd~p~~~d~i~~~a~~LYgliHaRyi~T~~Gl~~m~~Ky~  315 (498)
                                                                   +.+.++++|+.||||||||||+|++||++|++||+
T Consensus        62 ---------------------------------------------~~~~i~~~a~~LYGLIHaRyI~T~~Gl~~m~eKy~   96 (173)
T d1qf8a_          62 ---------------------------------------------QSDLIEQAAEMLYGLIHARYILTNRGIAQMLEKYQ   96 (173)
T ss_dssp             ---------------------------------------------HHHHHHHHHHHHHHHHHHHHTTSHHHHHHHHHHHH
T ss_pred             ---------------------------------------------hhHHHHHHHHHHHHHhhhheeecHhHHHHHHHHHh
Confidence                                                         23445566666777777777888888888888888


Q ss_pred             CCCccccCCcCCCCCCccccccCCCCCCccceEecCCCcccccCCCCCCcccCCCCCCCCccccccccCCCcccccCCCC
Q psy10861        316 TGDFGHCPRVYCESQPMLPIGLSDVPGEAMVKSYCPKCMDVYTPKSSRHHHTDGLSDVPGEAMVKSYCPKCMDVYTPKSS  395 (498)
Q Consensus       316 ~~~FG~CPRv~C~~~~~LP~G~sd~~~~~~vklYCP~C~dvY~p~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~p~~~  395 (498)
                      +++||+||||+|++|+|||||+||+||+++||+|||+|+|||+|                                 +++
T Consensus        97 ~g~FG~CPRv~C~~~~~LPiGlSd~~g~~~vKlyCP~C~dvY~p---------------------------------~s~  143 (173)
T d1qf8a_          97 QGDFGYCPRVYCENQPMLPIGLSDIPGEAMVKLYCPKCMDVYTP---------------------------------KSS  143 (173)
T ss_dssp             TTTTCBCCBGGGTTCBCEEECSCSSTTSCBCEEECTTTCCEECC---------------------------------SSG
T ss_pred             CCCCCCCCCcccCCCcccccccCCCCCcCcceEECCChhhccCC---------------------------------CCc
Confidence            88888888999999999999999999999999999999999995                                 445


Q ss_pred             CCCCccccccCCchhhHHHhhcCCCCCCCC
Q psy10861        396 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP  425 (498)
Q Consensus       396 ~~~~iDGa~fG~sFph~f~~~~p~~~p~~~  425 (498)
                      ++.+||||||||||||||||+||+++|++|
T Consensus       144 ~~~~iDGA~FG~sFph~fl~~yp~l~P~~P  173 (173)
T d1qf8a_         144 RHHHTDGAYFGTGFPHMLFMVHPEYRPKRP  173 (173)
T ss_dssp             GGTTSBGGGTCSSHHHHHHHHCGGGSCSCC
T ss_pred             ccCcccchhccCchHHHHHHHCcccCCCCC
Confidence            678899999999999999999999999875
>d1qf8a_ g.41.4.1 (A:) Casein kinase II beta subunit {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure