Psyllid ID: psy10925

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210----
MSSVSEEKMTFPPLKNDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRIRK
cccccccccccccccccccccccccccccccEEccccccccHHHHHHHccccHHHccccHHHHHHHHHcccccccccEEEEcccccccccccccEEEEEcccccccccccccHHHHHccccccccccccHHHHHHHHHHHHHcccccccccccccHHHHHHHHHcccccccHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHcccccccccc
ccccccccccccHcccHHHHHcccccccccEccccccccccHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHcccccEEccccccHHHHHcccccEEEcccEEEcccccccHHHHHHcccHHHHHHHcHHHHHHHHHHHHHHcccccEEEEEEcHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcccccccEEcc
mssvseekmtfpplkndrllprgeevdkipIWIMRQAgrylpefrelrskhdffticqtpELAAEITlqpirrfnldasiifsdILVIPQALGmvvemkpavgpvlpeplvipedIKKLKTSVDVYKELNYVFEAITLTrhklegkvpligfsgapWTLMSYMIEgggsktmskskhwlykypeESKKLLEILTNVIvdyptrlhyfpsyrirk
mssvseekmtfpplkndrllprgeevdkipiWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGpvlpeplvipeDIKKLKTSVDVYKELNYVFEAITltrhklegkvplIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVivdyptrlhyfpsyrirk
MSSVSEEKMTFPPLKNDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRIRK
************************EVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYR***
***************NDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRI**
***********PPLKNDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRIRK
********MTFPPLKNDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRIRK
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MSSVSEEKMTFPPLKNDRLLPRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLHYFPSYRIRK
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query214 2.2.26 [Sep-21-2011]
O18601 386 Uroporphyrinogen decarbox N/A N/A 0.887 0.492 0.694 7e-78
Q9V595 356 Uroporphyrinogen decarbox yes N/A 0.883 0.530 0.697 3e-77
Q9PTS2 369 Uroporphyrinogen decarbox yes N/A 0.887 0.514 0.692 6e-77
Q54DF9 364 Uroporphyrinogen decarbox yes N/A 0.934 0.549 0.608 2e-69
Q8HY31 367 Uroporphyrinogen decarbox N/A N/A 0.934 0.544 0.594 6e-68
P70697 367 Uroporphyrinogen decarbox yes N/A 0.892 0.520 0.611 4e-67
P06132 367 Uroporphyrinogen decarbox yes N/A 0.887 0.517 0.614 5e-67
Q5RDK5 367 Uroporphyrinogen decarbox yes N/A 0.887 0.517 0.614 4e-66
Q9USJ5 355 Uroporphyrinogen decarbox yes N/A 0.873 0.526 0.617 3e-65
P32362 364 Uroporphyrinogen decarbox yes N/A 0.892 0.524 0.601 7e-65
>sp|O18601|DCUP_DROVI Uroporphyrinogen decarboxylase OS=Drosophila virilis GN=Updo PE=3 SV=1 Back     alignment and function desciption
 Score =  290 bits (741), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 134/193 (69%), Positives = 161/193 (83%), Gaps = 3/193 (1%)

Query: 10  TFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEIT 67
            FPPLKND LL   RGE VD++P+W+MRQAGRYLPEF+ELR +HDFFT+C+TPELA E+T
Sbjct: 17  AFPPLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKQHDFFTVCRTPELACEVT 76

Query: 68  LQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYK 127
           +QP+RRF+LDASIIFSDILVIPQALG+ VEM   VGPVLP+P+  PED+K+L T      
Sbjct: 77  MQPLRRFDLDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPICTPEDLKRL-TPDGALS 135

Query: 128 ELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESK 187
            L YV +AIT+ RHKL+G+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WL  YPE++K
Sbjct: 136 RLTYVGDAITMMRHKLDGRVPLIGFTGAPWTLMGYMIEGGGSKTMSKAKAWLTNYPEDTK 195

Query: 188 KLLEILTNVIVDY 200
             L +LT+VIVDY
Sbjct: 196 LFLILLTDVIVDY 208
Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
Drosophila virilis (taxid: 7244)
EC: 4EC: .EC: 1EC: .EC: 1EC: .EC: 3EC: 7
>sp|Q9V595|DCUP_DROME Uroporphyrinogen decarboxylase OS=Drosophila melanogaster GN=Updo PE=3 SV=1 Back     alignment and function description
>sp|Q9PTS2|DCUP_DANRE Uroporphyrinogen decarboxylase OS=Danio rerio GN=urod PE=2 SV=1 Back     alignment and function description
>sp|Q54DF9|DCUP_DICDI Uroporphyrinogen decarboxylase OS=Dictyostelium discoideum GN=hemE PE=1 SV=1 Back     alignment and function description
>sp|Q8HY31|DCUP_SHEEP Uroporphyrinogen decarboxylase OS=Ovis aries GN=UROD PE=1 SV=1 Back     alignment and function description
>sp|P70697|DCUP_MOUSE Uroporphyrinogen decarboxylase OS=Mus musculus GN=Urod PE=1 SV=2 Back     alignment and function description
>sp|P06132|DCUP_HUMAN Uroporphyrinogen decarboxylase OS=Homo sapiens GN=UROD PE=1 SV=2 Back     alignment and function description
>sp|Q5RDK5|DCUP_PONAB Uroporphyrinogen decarboxylase OS=Pongo abelii GN=UROD PE=2 SV=1 Back     alignment and function description
>sp|Q9USJ5|DCUP_SCHPO Uroporphyrinogen decarboxylase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=hem12 PE=3 SV=2 Back     alignment and function description
>sp|P32362|DCUP_RAT Uroporphyrinogen decarboxylase (Fragment) OS=Rattus norvegicus GN=Urod PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
193697420 349 PREDICTED: uroporphyrinogen decarboxylas 0.897 0.550 0.762 6e-85
239789762198 ACYPI004051 [Acyrthosiphon pisum] 0.897 0.969 0.762 8e-85
345479548 373 PREDICTED: uroporphyrinogen decarboxylas 0.901 0.517 0.748 4e-81
345479550 360 PREDICTED: uroporphyrinogen decarboxylas 0.887 0.527 0.756 4e-81
242021862 346 Uroporphyrinogen decarboxylase, putative 0.892 0.552 0.725 2e-78
321475414 348 uroporphyrinogen decarboxylase [Daphnia 0.897 0.551 0.711 8e-78
260813440 368 hypothetical protein BRAFLDRAFT_224293 [ 0.892 0.519 0.704 2e-77
195124551 356 GI18416 [Drosophila mojavensis] gi|19391 0.883 0.530 0.713 3e-77
332030423 377 Uroporphyrinogen decarboxylase [Acromyrm 0.887 0.503 0.689 4e-77
312375040 570 hypothetical protein AND_15199 [Anophele 0.883 0.331 0.703 1e-76
>gi|193697420|ref|XP_001952264.1| PREDICTED: uroporphyrinogen decarboxylase-like [Acyrthosiphon pisum] Back     alignment and taxonomy information
 Score =  319 bits (817), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 148/194 (76%), Positives = 175/194 (90%), Gaps = 2/194 (1%)

Query: 9   MTFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEI 66
           M FP LKNDR+L   RGEEVD+IP+W+MRQAGRYLPEFRELRS++DFFTIC+TPELA E+
Sbjct: 1   MNFPALKNDRILRAARGEEVDRIPVWVMRQAGRYLPEFRELRSRYDFFTICRTPELACEV 60

Query: 67  TLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVY 126
           TLQPI+R++LDASIIFSDILVI QALGM+VEM+P+VGPV+P+PL  P D+ +L  S+DV 
Sbjct: 61  TLQPIQRYDLDASIIFSDILVIVQALGMIVEMQPSVGPVIPDPLKEPIDLDRLNQSIDVK 120

Query: 127 KELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEES 186
           +EL YVFEAITLTRH+L G+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WLYKYPEES
Sbjct: 121 QELGYVFEAITLTRHRLNGQVPLIGFTGAPWTLMCYMIEGGGSKTMSKAKKWLYKYPEES 180

Query: 187 KKLLEILTNVIVDY 200
           KKLL+ILT++IV Y
Sbjct: 181 KKLLQILTDIIVKY 194

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota
>gi|239789762|dbj|BAH71483.1| ACYPI004051 [Acyrthosiphon pisum] Back     alignment and taxonomy information
>gi|345479548|ref|XP_003423974.1| PREDICTED: uroporphyrinogen decarboxylase-like isoform 2 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|345479550|ref|XP_001607401.2| PREDICTED: uroporphyrinogen decarboxylase-like isoform 1 [Nasonia vitripennis] Back     alignment and taxonomy information
>gi|242021862|ref|XP_002431362.1| Uroporphyrinogen decarboxylase, putative [Pediculus humanus corporis] gi|212516630|gb|EEB18624.1| Uroporphyrinogen decarboxylase, putative [Pediculus humanus corporis] Back     alignment and taxonomy information
>gi|321475414|gb|EFX86377.1| uroporphyrinogen decarboxylase [Daphnia pulex] Back     alignment and taxonomy information
>gi|260813440|ref|XP_002601426.1| hypothetical protein BRAFLDRAFT_224293 [Branchiostoma floridae] gi|229286721|gb|EEN57438.1| hypothetical protein BRAFLDRAFT_224293 [Branchiostoma floridae] Back     alignment and taxonomy information
>gi|195124551|ref|XP_002006755.1| GI18416 [Drosophila mojavensis] gi|193911823|gb|EDW10690.1| GI18416 [Drosophila mojavensis] Back     alignment and taxonomy information
>gi|332030423|gb|EGI70111.1| Uroporphyrinogen decarboxylase [Acromyrmex echinatior] Back     alignment and taxonomy information
>gi|312375040|gb|EFR22487.1| hypothetical protein AND_15199 [Anopheles darlingi] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query214
FB|FBgn0033428 356 Updo "Updo" [Drosophila melano 0.883 0.530 0.697 2.9e-71
ZFIN|ZDB-GENE-000208-18 402 urod "uroporphyrinogen decarbo 0.887 0.472 0.687 1.4e-69
UNIPROTKB|F1NBI2 368 UROD "Uroporphyrinogen decarbo 0.887 0.516 0.671 3.1e-67
DICTYBASE|DDB_G0292294 364 hemE "uroporphyrinogen decarbo 0.934 0.549 0.608 4.7e-64
UNIPROTKB|E1BEX4 367 UROD "Uncharacterized protein" 0.934 0.544 0.594 2.1e-61
UNIPROTKB|F1S365 367 UROD "Uncharacterized protein" 0.887 0.517 0.614 2.1e-61
POMBASE|SPCC4B3.05c 355 hem12 "uroporphyrinogen decarb 0.873 0.526 0.617 5.5e-61
UNIPROTKB|P06132 367 UROD "Uroporphyrinogen decarbo 0.887 0.517 0.614 7.1e-61
MGI|MGI:98916 367 Urod "uroporphyrinogen decarbo 0.887 0.517 0.614 1.5e-60
UNIPROTKB|E2RCH3 367 UROD "Uncharacterized protein" 0.887 0.517 0.604 8.1e-60
FB|FBgn0033428 Updo "Updo" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
 Score = 721 (258.9 bits), Expect = 2.9e-71, P = 2.9e-71
 Identities = 134/192 (69%), Positives = 162/192 (84%)

Query:    11 FPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 68
             FP LKND LL   RGE VD++P+W+MRQAGRYLPEF+ELR  HDFFT+C+TPELA E+T+
Sbjct:     7 FPVLKNDNLLRAARGEVVDRVPVWVMRQAGRYLPEFQELRKHHDFFTVCRTPELACEVTM 66

Query:    69 QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
             QP+RRF+LDASIIFSDILVIPQALG+ VEM   VGPVLP+P+V+PED+K+L T       
Sbjct:    67 QPLRRFDLDASIIFSDILVIPQALGLTVEMHAGVGPVLPQPIVVPEDLKRL-TPDGALSR 125

Query:   129 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 188
             L+YV +AIT+ RHKLEG+VPLIGF+GAPWTLM YMIEGGGSKTMSK+K WL ++PE+SK 
Sbjct:   126 LSYVGDAITMMRHKLEGRVPLIGFTGAPWTLMGYMIEGGGSKTMSKAKAWLNEHPEDSKL 185

Query:   189 LLEILTNVIVDY 200
              L +LT+ IVDY
Sbjct:   186 FLNLLTDAIVDY 197
GO:0006783 "heme biosynthetic process" evidence=NAS
GO:0006779 "porphyrin-containing compound biosynthetic process" evidence=IEA;NAS
GO:0005737 "cytoplasm" evidence=NAS
GO:0004853 "uroporphyrinogen decarboxylase activity" evidence=ISS
ZFIN|ZDB-GENE-000208-18 urod "uroporphyrinogen decarboxylase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1NBI2 UROD "Uroporphyrinogen decarboxylase" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0292294 hemE "uroporphyrinogen decarboxylase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEX4 UROD "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|F1S365 UROD "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
POMBASE|SPCC4B3.05c hem12 "uroporphyrinogen decarboxylase Hem12 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
UNIPROTKB|P06132 UROD "Uroporphyrinogen decarboxylase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
MGI|MGI:98916 Urod "uroporphyrinogen decarboxylase" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2RCH3 UROD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
A6GVN8DCUP_FLAPJ4, ., 1, ., 1, ., 3, 70.53920.87850.5513yesN/A
Q9V595DCUP_DROME4, ., 1, ., 1, ., 3, 70.69790.88310.5308yesN/A
Q2S1W0DCUP_SALRD4, ., 1, ., 1, ., 3, 70.55610.90180.5451yesN/A
Q54DF9DCUP_DICDI4, ., 1, ., 1, ., 3, 70.60890.93450.5494yesN/A
Q5RDK5DCUP_PONAB4, ., 1, ., 1, ., 3, 70.61450.88780.5177yesN/A
P70697DCUP_MOUSE4, ., 1, ., 1, ., 3, 70.61130.89250.5204yesN/A
P06132DCUP_HUMAN4, ., 1, ., 1, ., 3, 70.61450.88780.5177yesN/A
Q3J6U6DCUP_NITOC4, ., 1, ., 1, ., 3, 70.52100.86910.5210yesN/A
Q9PTS2DCUP_DANRE4, ., 1, ., 1, ., 3, 70.69270.88780.5149yesN/A
B6J229DCUP_COXB24, ., 1, ., 1, ., 3, 70.52290.79430.4709yesN/A
B3QXB5DCUP_CHLT34, ., 1, ., 1, ., 3, 70.53960.86910.5269yesN/A
A5FLE7DCUP_FLAJ14, ., 1, ., 1, ., 3, 70.51320.86910.5454yesN/A
Q0A4Y2DCUP_ALHEH4, ., 1, ., 1, ., 3, 70.51050.86910.5095yesN/A
P32362DCUP_RAT4, ., 1, ., 1, ., 3, 70.60100.89250.5247yesN/A
A0M6C4DCUP_GRAFK4, ., 1, ., 1, ., 3, 70.51320.86910.5454yesN/A
Q9USJ5DCUP_SCHPO4, ., 1, ., 1, ., 3, 70.61780.87380.5267yesN/A
A0L3L1DCUP_MAGSM4, ., 1, ., 1, ., 3, 70.50560.81300.4887yesN/A
P32347DCUP_YEAST4, ., 1, ., 1, ., 3, 70.56120.89250.5276yesN/A
Q83EP0DCUP_COXBU4, ., 1, ., 1, ., 3, 70.52290.79430.4709yesN/A
A9NB09DCUP_COXBR4, ., 1, ., 1, ., 3, 70.52290.79430.4709yesN/A
A1AXS4DCUP_RUTMC4, ., 1, ., 1, ., 3, 70.50570.80370.4956yesN/A

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.1.1.370.824
3rd Layer4.1.10.766

Prediction of Functionally Associated Proteins

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
cd00717 335 cd00717, URO-D, Uroporphyrinogen decarboxylase (UR 1e-110
TIGR01464 338 TIGR01464, hemE, uroporphyrinogen decarboxylase 5e-97
PRK00115 346 PRK00115, hemE, uroporphyrinogen decarboxylase; Va 2e-92
pfam01208 338 pfam01208, URO-D, Uroporphyrinogen decarboxylase ( 2e-81
COG0407 352 COG0407, HemE, Uroporphyrinogen-III decarboxylase 2e-80
PLN02433 345 PLN02433, PLN02433, uroporphyrinogen decarboxylase 1e-70
cd03465 330 cd03465, URO-D_like, The URO-D _like protein super 1e-25
cd00465 306 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like prot 1e-23
cd03307 326 cd03307, Mta_CmuA_like, MtaA_CmuA_like family 6e-09
TIGR01463 340 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA 5e-08
PRK06252 339 PRK06252, PRK06252, methylcobalamin:coenzyme M met 2e-05
>gnl|CDD|238368 cd00717, URO-D, Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information 
 Score =  319 bits (821), Expect = e-110
 Identities = 104/179 (58%), Positives = 134/179 (74%), Gaps = 1/179 (0%)

Query: 22  RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASII 81
           RGE VD+ P+W MRQAGRYLPE+RELR+K+ F  +C+ PELAAE+TLQP+RRF +DA+II
Sbjct: 5   RGEPVDRPPVWFMRQAGRYLPEYRELRAKYSFLELCKNPELAAEVTLQPVRRFGVDAAII 64

Query: 82  FSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRH 141
           FSDILV  +A+GM VE     GPV+P P+    D+ +L    D  +EL+YV+EAI LTR 
Sbjct: 65  FSDILVPLEAMGMDVEFVEGKGPVIPNPIRTEADVDRLLV-PDPEEELSYVYEAIKLTRK 123

Query: 142 KLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDY 200
           +L G+VPLIGF+GAPWTL SYMIEGGGSK  +K+K  +Y  PE    LL+ LT+  ++Y
Sbjct: 124 ELPGEVPLIGFAGAPWTLASYMIEGGGSKDFAKAKKMMYTDPEAFHALLDKLTDATIEY 182

This reaction is located at the branching point of the tetrapyrrole biosynthetic pathway, leading to the biosynthesis of heme, chlorophyll or bacteriochlorophyll. URO-D deficiency is responsible for the human genetic diseases familial porphyria cutanea tarda (fPCT) and hepatoerythropoietic porphyria (HEP). Length = 335
>gnl|CDD|233423 TIGR01464, hemE, uroporphyrinogen decarboxylase Back     alignment and domain information
>gnl|CDD|234644 PRK00115, hemE, uroporphyrinogen decarboxylase; Validated Back     alignment and domain information
>gnl|CDD|216366 pfam01208, URO-D, Uroporphyrinogen decarboxylase (URO-D) Back     alignment and domain information
>gnl|CDD|223484 COG0407, HemE, Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|215237 PLN02433, PLN02433, uroporphyrinogen decarboxylase Back     alignment and domain information
>gnl|CDD|239548 cd03465, URO-D_like, The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>gnl|CDD|238261 cd00465, URO-D_CIMS_like, The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>gnl|CDD|239423 cd03307, Mta_CmuA_like, MtaA_CmuA_like family Back     alignment and domain information
>gnl|CDD|130530 TIGR01463, mtaA_cmuA, methyltransferase, MtaA/CmuA family Back     alignment and domain information
>gnl|CDD|235753 PRK06252, PRK06252, methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 214
PRK00115 346 hemE uroporphyrinogen decarboxylase; Validated 100.0
COG0407 352 HemE Uroporphyrinogen-III decarboxylase [Coenzyme 100.0
TIGR01464 338 hemE uroporphyrinogen decarboxylase. This model re 100.0
PLN02433 345 uroporphyrinogen decarboxylase 100.0
cd00717 335 URO-D Uroporphyrinogen decarboxylase (URO-D) is a 100.0
KOG2872|consensus 359 100.0
PRK06252 339 methylcobalamin:coenzyme M methyltransferase; Vali 100.0
TIGR01463 340 mtaA_cmuA methyltransferase, MtaA/CmuA family. Thi 100.0
cd03307 326 Mta_CmuA_like MtaA_CmuA_like family. MtaA/CmuA, al 100.0
PF01208 343 URO-D: Uroporphyrinogen decarboxylase (URO-D); Int 100.0
cd03465 330 URO-D_like The URO-D _like protein superfamily inc 100.0
cd03308 378 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized pro 99.97
cd00465 306 URO-D_CIMS_like The URO-D_CIMS_like protein superf 99.88
cd03309 321 CmuC_like CmuC_like. Proteins similar to the putat 98.53
PRK04326 330 methionine synthase; Provisional 98.26
cd03310 321 CIMS_like CIMS - Cobalamine-independent methonine 97.0
PRK00957 305 methionine synthase; Provisional 94.87
PF08885251 GSCFA: GSCFA family; InterPro: IPR014982 This grou 87.52
>PRK00115 hemE uroporphyrinogen decarboxylase; Validated Back     alignment and domain information 
Probab=100.00  E-value=7.6e-47  Score=334.99  Aligned_cols=192  Identities=51%  Similarity=0.943  Sum_probs=183.7

Q ss_pred             CCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcchhh
Q psy10925         13 PLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVIP   89 (214)
Q Consensus        13 ~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~~~a   89 (214)
                      ..++||++  ++|+++||+|||+|+|+|+|+|+|.+...|+ ++.|++.|||++|+++++++++||+|++++++|+++++
T Consensus         2 ~~~~er~~~~~~g~~~driPv~~~~~~g~~~pe~~~~~~~~~~f~e~~~~~e~~ae~~~~~~~~~g~D~~~i~~d~~~~~   81 (346)
T PRK00115          2 ELKNDRFLRALRGEPVDRTPVWMMRQAGRYLPEYRALRAKAGSFLELCKNPELAAEVTLQPVRRYGVDAAILFSDILTPP   81 (346)
T ss_pred             CcchhHHHHHHcCCCCCCCCeeehHhhccccHHHHHHHhccCcHHHHhCCHHHHHHHHHHHHHHhCCCeEEecccchhhH
Confidence            34689999  9999999999999999999999999999999 99999999999999999999999999999999999999


Q ss_pred             hhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCCCC
Q psy10925         90 QALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGS  169 (214)
Q Consensus        90 Ea~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~g~  169 (214)
                      |||||++.|+++.+|++.++|++.+|+++|+++ ++++|++.+++|++++++++++++|++++++||||+|++|++|+|+
T Consensus        82 ea~G~~i~~~~~~~P~~~~~i~~~~d~~~l~~~-~~~~~~~~~leai~~l~~~~~~~~~vig~v~gP~Tla~~l~~~~~~  160 (346)
T PRK00115         82 DAMGLDLDFEEGEGPVFDNPIRTEADVEKLPVP-DPEEDLPYVLEAVRLLRRELGGEVPLIGFAGAPWTLATYMVEGGGS  160 (346)
T ss_pred             HHcCCeeeeCCCCCCcCCCCcCCHHHHHhcCCC-CchhccHHHHHHHHHHHHHhCCCceEEeeCCcHHHHHHHHHcCCCC
Confidence            999999999998899886699999999999887 7788999999999999999999999999999999999999988888


Q ss_pred             CchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925        170 KTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH  205 (214)
Q Consensus       170 ~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~  205 (214)
                      +++.+++++++++||.+|++|+++|+.+++|+++|+
T Consensus       161 ~~~~~~~~~~~~~Pe~v~~ll~~~t~~~~~~~~~~~  196 (346)
T PRK00115        161 KDYAKTKAMMYAEPELLHALLDKLADATIAYLNAQI  196 (346)
T ss_pred             ccHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            888888899999999999999999999999999975

>COG0407 HemE Uroporphyrinogen-III decarboxylase [Coenzyme metabolism] Back     alignment and domain information
>TIGR01464 hemE uroporphyrinogen decarboxylase Back     alignment and domain information
>PLN02433 uroporphyrinogen decarboxylase Back     alignment and domain information
>cd00717 URO-D Uroporphyrinogen decarboxylase (URO-D) is a dimeric cytosolic enzyme that decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, without requiring any prosthetic groups or cofactors Back     alignment and domain information
>KOG2872|consensus Back     alignment and domain information
>PRK06252 methylcobalamin:coenzyme M methyltransferase; Validated Back     alignment and domain information
>TIGR01463 mtaA_cmuA methyltransferase, MtaA/CmuA family Back     alignment and domain information
>cd03307 Mta_CmuA_like MtaA_CmuA_like family Back     alignment and domain information
>PF01208 URO-D: Uroporphyrinogen decarboxylase (URO-D); InterPro: IPR000257 Uroporphyrinogen decarboxylase (URO-D), the fifth enzyme of the haem biosynthetic pathway, catalyses the sequential decarboxylation of the four acetyl side chains of uroporphyrinogen to yield coproporphyrinogen [] Back     alignment and domain information
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases Back     alignment and domain information
>cd03308 CmuA_CmuC_like CmuA_CmuC_like: uncharacterized protein family similar to uroporphyrinogen decarboxylase (URO-D) and the methyltransferases CmuA and CmuC Back     alignment and domain information
>cd00465 URO-D_CIMS_like The URO-D_CIMS_like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases, as well as cobalamine (B12) independent methionine synthases Back     alignment and domain information
>cd03309 CmuC_like CmuC_like Back     alignment and domain information
>PRK04326 methionine synthase; Provisional Back     alignment and domain information
>cd03310 CIMS_like CIMS - Cobalamine-independent methonine synthase, or MetE Back     alignment and domain information
>PRK00957 methionine synthase; Provisional Back     alignment and domain information
>PF08885 GSCFA: GSCFA family; InterPro: IPR014982 This group of proteins are functionally uncharacterised Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
1jpi_A 388 Phe232leu Mutant Of Human Urod, Human Uroporphyrino 4e-68
3gw0_A 367 Urod Mutant G318r Length = 367 4e-68
1uro_A 367 Uroporphyrinogen Decarboxylase Length = 367 4e-68
3gw3_A 367 Human Urod Mutant K297n Length = 367 4e-68
3gvv_A 367 Single-Chain Urod Y164g (Gy) Mutation Length = 367 4e-68
1jph_A 388 Ile260thr Mutant Of Human Urod, Human Uroporphyrino 4e-68
1r3w_A 367 Uroporphyrinogen Decarboxylase Y164f Mutant In Comp 1e-67
1r3r_A 367 Uroporphyrinogen Decarboxylase With Mutation D86n L 1e-67
1r3v_A 367 Uroporphyrinogen Decarboxylase Single Mutant D86e I 1e-67
1r3s_A 367 Uroporphyrinogen Decarboxylase Single Mutant D86g I 2e-67
1jpk_A 388 Gly156asp Mutant Of Human Urod, Human Uroporphyrino 3e-67
2q71_A 356 Uroporphyrinogen Decarboxylase G168r Single Mutant 4e-67
3cyv_A 354 Crystal Structure Of Uroporphyrinogen Decarboxylase 9e-45
4exq_A 368 Crystal Structure Of Uroporphyrinogen Decarboxylase 6e-38
2inf_A 359 Crystal Structure Of Uroporphyrinogen Decarboxylase 2e-36
2eja_A 338 Crystal Structure Of Uroporphyrinogen Decarboxylase 7e-36
1j93_A 353 Crystal Structure And Substrate Binding Modeling Of 5e-27
>pdb|1JPI|A Chain A, Phe232leu Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure 
Iteration: 1

 Score =  254 bits (648), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 118/192 (61%), Positives = 146/192 (76%), Gaps = 2/192 (1%)
Query: 11  FPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 68
           FP LKND  L    GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C++PE   E+TL
Sbjct: 32  FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 91
Query: 69  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
           QP+RRF LDA+IIFSDILV+PQALGM V M P  GP  PEPL   +D+++L+    V  E
Sbjct: 92  QPLRRFPLDAAIIFSDILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 151
Query: 129 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 188
           L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 152 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 211
Query: 189 LLEILTNVIVDY 200
           LL ILT+ +V Y
Sbjct: 212 LLRILTDALVPY 223
>pdb|3GW0|A Chain A, Urod Mutant G318r Length = 367 Back     alignment and structure
>pdb|1URO|A Chain A, Uroporphyrinogen Decarboxylase Length = 367 Back     alignment and structure
>pdb|3GW3|A Chain A, Human Urod Mutant K297n Length = 367 Back     alignment and structure
>pdb|3GVV|A Chain A, Single-Chain Urod Y164g (Gy) Mutation Length = 367 Back     alignment and structure
>pdb|1JPH|A Chain A, Ile260thr Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure
>pdb|1R3W|A Chain A, Uroporphyrinogen Decarboxylase Y164f Mutant In Complex With Coproporphyrinogen-Iii Length = 367 Back     alignment and structure
>pdb|1R3R|A Chain A, Uroporphyrinogen Decarboxylase With Mutation D86n Length = 367 Back     alignment and structure
>pdb|1R3V|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86e In Complex With Coproporphyrinogen-I Length = 367 Back     alignment and structure
>pdb|1R3S|A Chain A, Uroporphyrinogen Decarboxylase Single Mutant D86g In Complex With Coproporphyrinogen-I Length = 367 Back     alignment and structure
>pdb|1JPK|A Chain A, Gly156asp Mutant Of Human Urod, Human Uroporphyrinogen Iii Decarboxylase Length = 388 Back     alignment and structure
>pdb|2Q71|A Chain A, Uroporphyrinogen Decarboxylase G168r Single Mutant Enzyme In Complex With Coproporphyrinogen-Iii Length = 356 Back     alignment and structure
>pdb|3CYV|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Shigella Flexineri: New Insights Into Its Catalytic Mechanism Length = 354 Back     alignment and structure
>pdb|4EXQ|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase (Upd) From Burkholderia Thailandensis E264 Length = 368 Back     alignment and structure
>pdb|2INF|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Bacillus Subtilis Length = 359 Back     alignment and structure
>pdb|2EJA|A Chain A, Crystal Structure Of Uroporphyrinogen Decarboxylase From Aquifex Aeolicus Length = 338 Back     alignment and structure
>pdb|1J93|A Chain A, Crystal Structure And Substrate Binding Modeling Of The Uroporphyrinogen-Iii Decarboxylase From Nicotiana Tabacum: Implications For The Catalytic Mechanism Length = 353 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query214
1r3s_A 367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 1e-125
2inf_A 359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 1e-118
3cyv_A 354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 1e-117
1j93_A 353 UROD, uroporphyrinogen decarboxylase; beta barrel, 1e-115
4exq_A 368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 1e-115
2eja_A 338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 1e-106
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-04
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Length = 367 Back     alignment and structure
 Score =  356 bits (916), Expect = e-125
 Identities = 118/202 (58%), Positives = 147/202 (72%), Gaps = 2/202 (0%)

Query: 1   MSSVSEEKMTFPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQ 58
           M +       FP LKND  L    GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C+
Sbjct: 1   MEANGLGPQGFPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCR 60

Query: 59  TPELAAEITLQPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKK 118
           +PE   E+TLQP+RRF LDA+IIFS ILV+PQALGM V M P  GP  PEPL   +D+++
Sbjct: 61  SPEACCELTLQPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLER 120

Query: 119 LKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHW 178
           L+    V  EL YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K W
Sbjct: 121 LRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRW 180

Query: 179 LYKYPEESKKLLEILTNVIVDY 200
           LY+ P+ S +LL ILT+ +V Y
Sbjct: 181 LYQRPQASHQLLRILTDALVPY 202
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Length = 359 Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Length = 354 Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Length = 353 Back     alignment and structure
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Length = 368 Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Length = 338 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
4exq_A 368 UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid 100.0
1r3s_A 367 URO-D, uroporphyrinogen decarboxylase, UPD; uropor 100.0
1j93_A 353 UROD, uroporphyrinogen decarboxylase; beta barrel, 100.0
3cyv_A 354 URO-D, UPD, uroporphyrinogen decarboxylase; alpha/ 100.0
2inf_A 359 URO-D, UPD, uroporphyrinogen decarboxylase; (alpha 100.0
2eja_A 338 URO-D, UPD, uroporphyrinogen decarboxylase; dimer, 100.0
4ay7_A 348 Methylcobalamin\: coenzyme M methyltransferase; TI 100.0
1ypx_A 375 Putative vitamin-B12 independent methionine synth 88.25
2nq5_A 755 5-methyltetrahydropteroyltriglutamate-- homocystei 82.74
>4exq_A UPD, URO-D, uroporphyrinogen decarboxylase; ssgcid, NIH, SBRI, heme biosynthesis, structural GENO niaid; 1.65A {Burkholderia thailandensis} Back     alignment and structure
Probab=100.00  E-value=4.1e-50  Score=357.41  Aligned_cols=195  Identities=41%  Similarity=0.764  Sum_probs=184.8

Q ss_pred             CCCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCC-ChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcc
Q psy10925         10 TFPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKH-DFFTICQTPELAAEITLQPIRRFNLDASIIFSDIL   86 (214)
Q Consensus        10 ~~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~-~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~   86 (214)
                      .|+|+||||++  ++||++||+|||+|+|||||+|+|++.+.++ ++.|+|.|||++||++++++++||+|++++++|++
T Consensus         5 ~~~~~~~~r~l~al~ge~~dr~Pvw~mrqaGr~lpey~~~r~~~~~f~~~~~~pe~~ae~tl~~~~~~~~Da~i~fsDi~   84 (368)
T 4exq_A            5 MAQTLINDTFLRALLREPTDYTPIWLMRQAGRYLPEYNATRARAGSFLGLAKHPDYATEVTLQPLERFPLDAAILFSDIL   84 (368)
T ss_dssp             SSSCBSCCHHHHHHTTCCCSSCCBCCTTSSSTTSHHHHHHHHHHSSHHHHHHSHHHHHHHHHHHHHHSCCSCEECCCCTT
T ss_pred             cCCcccchHHHHHHcCCCCCCCCEEeeHhhhhccHHHHHHHhcCCCHHHHHcCHHHHHHHHHHHHHHhCCCEEEeccccc
Confidence            48889999999  9999999999999999999999999999997 99999999999999999999999999999999999


Q ss_pred             hhhhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCC-----CccEEEecccHHHHHH
Q psy10925         87 VIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEG-----KVPLIGFSGAPWTLMS  161 (214)
Q Consensus        87 ~~aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~-----~vpv~~~v~gP~TlA~  161 (214)
                      +++||||+++.|.++.+|++.+||++.+|+++|+++ |++++++.+++|++++++++++     ++|++|+++||||+|+
T Consensus        85 ~~~ea~G~~v~~~~~~gP~~~~pi~~~~d~~~l~~~-~~~~~l~~v~eai~~l~~~l~~~~~~~~vpligf~gaP~Tla~  163 (368)
T 4exq_A           85 TIPDAMGLGLDFAAGEGPKFAHPVRTEADVAKLAVP-DIGATLGYVTDAVREIRRALTDGEGRQRVPLIGFSGSPWTLAC  163 (368)
T ss_dssp             HHHHHTTTCEEC----CCEESSCCCSHHHHHTCCCC-CHHHHSHHHHHHHHHHHHHTBCTTSCBSSCEEEEEECHHHHHH
T ss_pred             hhHHHcCCeEEeCCCCCCCCCCCCCCHHHHHhccCC-ChhHHHHHHHHHHHHHHHHhCCcCcccceeEEEeCCcHHHHHH
Confidence            999999999999998899987799999999999988 8877999999999999999998     8999999999999999


Q ss_pred             HHHcCCCCCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925        162 YMIEGGGSKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH  205 (214)
Q Consensus       162 ~L~~~~g~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~  205 (214)
                      +|++|+|++++..++++|+++||.+|++|+++|+.+++|+++|+
T Consensus       164 ~l~~g~~s~~~~~~~~~~~~~Pe~~~~ll~~i~~~~~~y~~~qi  207 (368)
T 4exq_A          164 YMVEGGGSDDFRTVKSMAYARPDLMHRILDVNAQAVAAYLNAQI  207 (368)
T ss_dssp             HHHHTBCCSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHcCCCcchHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999985
>1r3s_A URO-D, uroporphyrinogen decarboxylase, UPD; uroporphyrinogen decarboxylase coproporphyrinogen, X-RAY crystallography, lyase; HET: 1CP; 1.65A {Homo sapiens} SCOP: c.1.22.1 PDB: 1r3t_A* 1r3r_A 1r3q_A* 1r3y_A* 1uro_A 3gvq_A 3gvr_A 1r3v_A* 3gvv_A 3gvw_A 1jph_A 1r3w_A* 3gw3_A 1jpi_A 1jpk_A 3gw0_A 2q71_A* 2q6z_A* Back     alignment and structure
>1j93_A UROD, uroporphyrinogen decarboxylase; beta barrel, plastidial enzyme, crystallographic dimer, lyase; 2.30A {Nicotiana tabacum} SCOP: c.1.22.1 Back     alignment and structure
>3cyv_A URO-D, UPD, uroporphyrinogen decarboxylase; alpha/beta barrel, cytoplasm, lyase, porphyrin biosynthesis; 2.80A {Shigella flexneri} Back     alignment and structure
>2inf_A URO-D, UPD, uroporphyrinogen decarboxylase; (alpha-beta)8 barrel, eight parallel beta strands surrounded by eight alpha helices, lyase; 2.30A {Bacillus subtilis} Back     alignment and structure
>2eja_A URO-D, UPD, uroporphyrinogen decarboxylase; dimer, X-RAY diffraction, structural genomics, NPPSFA; 1.90A {Aquifex aeolicus} Back     alignment and structure
>4ay7_A Methylcobalamin\: coenzyme M methyltransferase; TIM barrel; 1.80A {Methanosarcina mazei} PDB: 4ay8_A Back     alignment and structure
>1ypx_A Putative vitamin-B12 independent methionine synth protein; alpha-beta protein; 2.60A {Listeria monocytogenes} Back     alignment and structure
>2nq5_A 5-methyltetrahydropteroyltriglutamate-- homocysteine methyltransferase; structural genomics, target 6426D, PSI; 1.90A {Streptococcus mutans} PDB: 3l7s_A 3l7r_A 3t0c_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 214
d1r3sa_ 356 c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD 7e-57
d1j93a_ 343 c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD 2e-40
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Length = 356 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  181 bits (460), Expect = 7e-57
 Identities = 117/192 (60%), Positives = 145/192 (75%), Gaps = 2/192 (1%)

Query: 11  FPPLKNDRLLP--RGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITL 68
           FP LKND  L    GEE D  P+W MRQAGRYLPEFRE R+  DFF+ C++PE   E+TL
Sbjct: 1   FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTL 60

Query: 69  QPIRRFNLDASIIFSDILVIPQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKE 128
           QP+RRF LDA+IIFS ILV+PQALGM V M P  GP  PEPL   +D+++L+    V  E
Sbjct: 61  QPLRRFPLDAAIIFSGILVVPQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASE 120

Query: 129 LNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGGSKTMSKSKHWLYKYPEESKK 188
           L YVF+AITLTR +L G+VPLIGF+GAPWTLM+YM+EGGGS TM+++K WLY+ P+ S +
Sbjct: 121 LGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGGSSTMAQAKRWLYQRPQASHQ 180

Query: 189 LLEILTNVIVDY 200
           LL ILT+ +V Y
Sbjct: 181 LLRILTDALVPY 192
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Length = 343 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query214
d1r3sa_ 356 Uroporphyrinogen decarboxylase, UROD {Human (Homo 100.0
d1j93a_ 343 Uroporphyrinogen decarboxylase, UROD {Tobacco (Nic 100.0
>d1r3sa_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: UROD/MetE-like
family: Uroporphyrinogen decarboxylase, UROD
domain: Uroporphyrinogen decarboxylase, UROD
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=3.4e-47  Score=334.77  Aligned_cols=195  Identities=60%  Similarity=1.067  Sum_probs=183.9

Q ss_pred             CCCCccCccc--cCCcccCccchhhhhhhcccchHHHHHHcCCChhhhcCCHHHHHHHHHhHHHhcCCCeeeeCCCcchh
Q psy10925         11 FPPLKNDRLL--PRGEEVDKIPIWIMRQAGRYLPEFRELRSKHDFFTICQTPELAAEITLQPIRRFNLDASIIFSDILVI   88 (214)
Q Consensus        11 ~t~~~~ER~~--l~Ge~~DriPv~~~~~~g~~~p~~~a~~~g~~~~e~~~d~e~~ae~~~~~~~~~g~D~v~i~~d~~~~   88 (214)
                      +.++++||++  |+|+++||+|||+|||||||+|||++.+.++++.|+|+|||++||++++++++||+|++++++|++++
T Consensus         1 ~~~~~ne~~l~al~g~~~dr~PVw~MrqAGRylpey~~~r~~~~f~e~~~~pe~~ae~tl~p~~~~~~DaaiifsDil~~   80 (356)
T d1r3sa_           1 FPELKNDTFLRAAWGEETDYTPVWCMRQAGRYLPEFRETRAAQDFFSTCRSPEACCELTLQPLRRFPLDAAIIFSGILVV   80 (356)
T ss_dssp             CCCCSCCHHHHHHHTCCCSSCCBCCTTSSSTTSHHHHHHHHTSCHHHHHTCHHHHHHHHHHHHHHSCCSCEECCCCTTHH
T ss_pred             CCCcchHHHHHHHcCCCCCCCCEEEEecccccCHHHHHHHhcCCHHHHhcCHHHHHHHHhhHHHhCCcceeeeccccchh
Confidence            3567889999  99999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhCCCeeeecCCCCCccCCCCCCHHHHhccCCCccchhhHHHHHHHHHHHHHHcCCCccEEEecccHHHHHHHHHcCCC
Q psy10925         89 PQALGMVVEMKPAVGPVLPEPLVIPEDIKKLKTSVDVYKELNYVFEAITLTRHKLEGKVPLIGFSGAPWTLMSYMIEGGG  168 (214)
Q Consensus        89 aEa~G~~v~~~~~~~P~v~~~i~~~edl~~l~~~~d~~~r~~~~leai~~l~~~~g~~vpv~~~v~gP~TlA~~L~~~~g  168 (214)
                      +||||++++|.++.+|.+..++.+.+|+.++..+....++++.+++|++++++++++++|++|+++||||+|+++++|++
T Consensus        81 ~ealG~~v~f~~~~gp~~~~~~~~~~~~~~~~~~~~~~~~l~~v~eai~~~~~~l~~~~pliGf~ggP~Tla~yli~~~~  160 (356)
T d1r3sa_          81 PQALGMEVTMVPGKGPSFPEPLREEQDLERLRDPEVVASELGYVFQAITLTRQRLAGRVPLIGFAGAPWTLMTYMVEGGG  160 (356)
T ss_dssp             HHHTTCCCEEETTTEEECSSCCCSGGGGGGSCCGGGHHHHTHHHHHHHHHHHHHHTTSSCEEEEEECHHHHHHHHHHSSC
T ss_pred             hhhcCceeeecCCCCccCCcccccchhhhhcccchhhhhhhHHHHHHHHHHHHHhccccccceeeechHHHHHHHHhccc
Confidence            99999999999988999977888888888887662337789999999999999999999999999999999999999988


Q ss_pred             CCchHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhc
Q psy10925        169 SKTMSKSKHWLYKYPEESKKLLEILTNVIVDYPTRLH  205 (214)
Q Consensus       169 ~~~~~~~~~~l~~~Pe~v~~lL~~~t~~~~~~~~a~~  205 (214)
                      ..++..++++|+++||.+|++|+++|+.+++|+++|+
T Consensus       161 ~~~~~~~~~~~~~~pe~~~~ll~~lt~~~~~~~~~qi  197 (356)
T d1r3sa_         161 SSTMAQAKRWLYQRPQASHQLLRILTDALVPYLVGQV  197 (356)
T ss_dssp             CSSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHh
Confidence            8999999999999999999999999999999999986
>d1j93a_ c.1.22.1 (A:) Uroporphyrinogen decarboxylase, UROD {Tobacco (Nicotiana tabacum), UROD-III [TaxId: 4097]} Back     information, alignment and structure