Psyllid ID: psy10953

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-
Protein Sequence
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEEEQMVTP
Secondary Structure (PSIPRED)
cEEEEEEccccccEEEEEEcccccEEEEccccccEEEEEccccEEEEEcccccccEEEEEEcccccEEEEEcccccEEEccccccccccEEEEEEcccccEEEEEEccccEEEEEcccccEEEcccccccEEEEEEcccccEEEEEcccccEEEEEccccEEEEEccccccccEEEEEEcc
Secondary Structure Prediction (SSPRO)
ccEEEEEccccccEEEEEEcccccEEEEEccccEEEEEEcccccEEEEEEcccccEEEEEEcccccEEEEcccccEEEEEEccccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEccccccEEEEEEcccccEEEEcccccEEEEEEcccccEEEEEcccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mkqiskinvgpvdmwnvvfspddkyvlsgsqsgkinlygvetgklEQIFDTRGKFTLSIAYstdghwiasgaLDGIINifdantghsswvlstaftrdgkffiSASADHTVRVWNFARRenmhtfkhadqvwcvcvapdgdkfvsvgedkavhmysykpeeevevnggggeeeeeeqmvtp
Flexible Loop (DISEMBL)
mkqiskinvgpvdmWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVhmysykpeeevevnggggeeeeeeqmvtp
Low Complexity Region (SEG)
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPeeevevnggggeeeeeeQMVTP
Disordered region (IsUnstruct)
******INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS*************************
Disordered Region (DISOPRED)
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEEEQMVTP
Disordered Region (DISEMBL)
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP**********************
Disordered Region (DISPRO)
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEEEQMVTP
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEEEQMVTP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	181	2.2.26 [Sep-21-2011]
Q6P5M2	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.429	2e-40
Q6GMD2	305	WD repeat-containing prot	N/A	N/A	0.850	0.504	0.429	2e-34
Q6PBD6	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.424	5e-34
Q32LN7	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.419	9e-34
Q9GZS3	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.419	1e-33
Q5ZJH5	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.424	1e-33
Q9ERF3	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.414	2e-33
Q4V7A0	305	WD repeat-containing prot	yes	N/A	0.850	0.504	0.409	7e-33
Q26544	301	WD repeat-containing prot	N/A	N/A	0.801	0.481	0.290	5e-25
Q00808	1356	Vegetative incompatibilit	no	N/A	0.784	0.104	0.350	9e-20

>sp|Q6P5M2|WDR61_DANRE WD repeat-containing protein 61 OS=Danio rerio GN=wdr61 PE=2 SV=1

 Score =  164 bits (416), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 114/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  ++ GPVD W V FSPD KY+ +GS  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 97  KQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH SWVLS AF+ D   F+S+S+D +++VW+ + R  ++T F H DQ
Sbjct: 217 YDVQHANLAGTLSGHGSWVLSVAFSPDDTHFVSSSSDKSIKVWDTSSRSCVNTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V   P G K VS G+D+A+H+Y
Sbjct: 277 VWSVKYNPTGSKIVSAGDDRAIHIY 301

Danio rerio (taxid: 7955)

>sp|Q6GMD2|WDR61_XENLA WD repeat-containing protein 61 OS=Xenopus laevis GN=wdr61 PE=2 SV=1

 Score =  145 bits (365), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/205 (42%), Positives = 115/205 (56%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W+V FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct: 97  KQIRSIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSTDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQ 130
                        GH SWVL+ AF+ D   F+S+S+D +V+VW+ + R  +HTF  H DQ
Sbjct: 217 YDVQHASLAATLSGHGSWVLNVAFSPDDAHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNRNGSKIVSVGDDQEIHVY 301

Xenopus laevis (taxid: 8355)

>sp|Q6PBD6|WDR61_XENTR WD repeat-containing protein 61 OS=Xenopus tropicalis GN=wdr61 PE=2 SV=1

 Score =  143 bits (361), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 114/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W+V FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct: 97  KQIRAIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQ 130
                        GH SWVL+ AF+ D   F+S+S+D +V+VW+ + R  +HTF  H DQ
Sbjct: 217 YEVQHASLAATLSGHGSWVLNVAFSPDDTHFVSSSSDKSVKVWDVSARTCVHTFLDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSV +D+ +H+Y
Sbjct: 277 VWGVKYNKNGSKIVSVADDQEIHVY 301

Xenopus tropicalis (taxid: 8364)

>sp|Q32LN7|WDR61_BOVIN WD repeat-containing protein 61 OS=Bos taurus GN=WDR61 PE=2 SV=1

 Score =  142 bits (359), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 97  KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH+SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNGNGSKIVSVGDDQEIHIY 301

Bos taurus (taxid: 9913)

>sp|Q9GZS3|WDR61_HUMAN WD repeat-containing protein 61 OS=Homo sapiens GN=WDR61 PE=1 SV=1

 Score =  142 bits (359), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 97  KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH+SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNGNGSKIVSVGDDQEIHIY 301

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1; it promotes leukemogenesis though association with MLL-rearranged oncoproteins, such as MLL-MLLT3/AF9 and MLL-MLLT1/ENL. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. In case of infection by influenza A strain H3N2, PAF1C associates with viral NS1 protein, thereby regulating gene transcription. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Homo sapiens (taxid: 9606)

>sp|Q5ZJH5|WDR61_CHICK WD repeat-containing protein 61 OS=Gallus gallus GN=WDR61 PE=2 SV=1

 Score =  142 bits (357), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 87/205 (42%), Positives = 112/205 (54%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W++ FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct: 97  KQIKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 217 YDVQHANLAGTLSGHGSWVLNVAFCPDDTHFVSSSSDKSVKVWDAGTRTCVHTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V     G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNGSGSKIVSVGDDQEIHIY 301

Gallus gallus (taxid: 9031)

>sp|Q9ERF3|WDR61_MOUSE WD repeat-containing protein 61 OS=Mus musculus GN=Wdr61 PE=2 SV=1

 Score =  142 bits (357), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 85/205 (41%), Positives = 113/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQ+  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 97  KQMKSIDAGPVDAWTLAFSPDSQYLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH+SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNGNGSKIVSVGDDQEIHVY 301

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Mus musculus (taxid: 10090)

>sp|Q4V7A0|WDR61_RAT WD repeat-containing protein 61 OS=Rattus norvegicus GN=Wdr61 PE=1 SV=1

 Score =  139 bits (351), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 84/205 (40%), Positives = 113/205 (55%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQ+  I+ GPVD W + FSPD +++ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 97  KQMKSIDAGPVDAWTLAFSPDSQHLATGTHMGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH+SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCIHTFFDHQDQ 276

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 277 VWGVKYNGNGSKIVSVGDDQEIHVY 301

Component of the PAF1 complex (PAF1C) which has multiple functions during transcription by RNA polymerase II and is implicated in regulation of development and maintenance of embryonic stem cell pluripotency. PAF1C associates with RNA polymerase II through interaction with POLR2A CTD non-phosphorylated and 'Ser-2'- and 'Ser-5'-phosphorylated forms and is involved in transcriptional elongation, acting both indepentently and synergistically with TCEA1 and in cooperation with the DSIF complex and HTATSF1. PAF1C is required for transcription of Hox and Wnt target genes. PAF1C is involved in hematopoiesis and stimulates transcriptional activity of MLL1. PAF1C is involved in histone modifications such as ubiquitination of histone H2B and methylation on histone H3 'Lys-4' (H3K4me3). PAF1C recruits the RNF20/40 E3 ubiquitin-protein ligase complex and the E2 enzyme UBE2A or UBE2B to chromatin which mediate monoubiquitination of 'Lys-120' of histone H2B (H2BK120ub1); UB2A/B-mediated H2B ubiquitination is proposed to be coupled to transcription. PAF1C is involved in mRNA 3' end formation probably through association with cleavage and poly(A) factors. Required for mono- and trimethylation on histone H3 'Lys-4' (H3K4me3), dimethylation on histone H3 'Lys-79' (H3K4me3). Required for Hox gene transcription. Component of the SKI complex which is thought to be involved in exosome-mediated RNA decay and associates with transcriptionally active genes in a manner dependent on PAF1C.

Rattus norvegicus (taxid: 10116)

>sp|Q26544|WSL17_SCHMA WD repeat-containing protein SL1-17 OS=Schistosoma mansoni PE=2 SV=1

 Score =  114 bits (284), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 57/196 (29%), Positives = 92/196 (46%), Gaps = 51/196 (26%)

Query: 11  PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS 70
           P D W + FSPD +++ +GS +G +N+  V+T + E      GKF   +AY +DG  +A+
Sbjct: 103 PADTWTIAFSPDSRFLATGSHTGCVNMINVQTAQKEGSIQLEGKFVYXLAYISDGSKLAA 162

Query: 71  GALDGIINIFDANTG--------------------------------------------- 85
           G ++G+++I D  TG                                             
Sbjct: 163 GTINGLVSICDLETGSVQFLDGHATPVRSVSFSPDGRLLASASDDKQIKVFDVRDGRLVI 222

Query: 86  -----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPD 139
                H  WV+S  F  D +  ++AS D +VR+W+ A +E  H F  H DQVWC   +P 
Sbjct: 223 PSLNGHKGWVVSVDFASDNRHLVTASTDCSVRIWDLASKEEKHCFNTHEDQVWCARYSPQ 282

Query: 140 GDKFVSVGEDKAVHMY 155
           G+  +SVG+D+++ +Y
Sbjct: 283 GNNIISVGDDRSIMIY 298

Schistosoma mansoni (taxid: 6183)

>sp|Q00808|HETE1_PODAS Vegetative incompatibility protein HET-E-1 OS=Podospora anserina GN=HET-E1 PE=4 SV=1

 Score = 96.3 bits (238), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 53/151 (35%), Positives = 81/151 (53%), Gaps = 9/151 (5%)

Query: 14   MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
            +W+V FSPD + V SGS  G I ++   +G   Q  +  G +  S+A+S DG  +ASG++
Sbjct: 1096 VWSVAFSPDGQRVASGSIDGTIKIWDAASGTCTQTLEGHGGWVHSVAFSPDGQRVASGSI 1155

Query: 74   DGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
            DG I I+DA +        GH  WV S AF+ DG+   S S+D T+++W+ A      T 
Sbjct: 1156 DGTIKIWDAASGTCTQTLEGHGGWVQSVAFSPDGQRVASGSSDKTIKIWDTASGTCTQTL 1215

Query: 126  K-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
            + H   V  V  +PDG +  S   D  + ++
Sbjct: 1216 EGHGGWVQSVAFSPDGQRVASGSSDNTIKIW 1246

Responsible for vegetative incompatibility through specific interactions with different alleles of the unlinked gene, het-c.

Podospora anserina (taxid: 5145)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
270001971	323	hypothetical protein TcasGA2_TC000886 [T	0.856	0.479	0.456	5e-44
91076958	346	PREDICTED: similar to AGAP007626-PA [Tri	0.856	0.447	0.456	1e-43
307209889	327	WD repeat-containing protein 61 [Harpegn	0.845	0.467	0.466	7e-43
158285326	336	AGAP007626-PA [Anopheles gambiae str. PE	0.861	0.464	0.461	9e-43
242016915	321	WD-repeat protein, putative [Pediculus h	0.850	0.479	0.468	3e-42
13173175	335	unknown protein i8 [Aedes aegypti]	0.861	0.465	0.451	4e-42
19335616	335	unknown protein [Aedes aegypti]	0.861	0.465	0.451	4e-42
157109057	335	hypothetical protein AaeL_AAEL005208 [Ae	0.861	0.465	0.451	4e-42
240848544	323	WD repeat domain 61-like [Acyrthosiphon	0.856	0.479	0.451	5e-42
19335618	335	unknown protein [Aedes aegypti]	0.861	0.465	0.451	6e-42

>gi|270001971|gb|EEZ98418.1| hypothetical protein TcasGA2_TC000886 [Tribolium castaneum]

 Score =  182 bits (462), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 51/206 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           K+I+ ++VGPV++W V FSPDDKY++SGS +GKI +Y VET K EQ  DTRGK+ LSIAY
Sbjct: 115 KKIAHVDVGPVELWTVAFSPDDKYIISGSHAGKITVYNVETAKAEQTLDTRGKYILSIAY 174

Query: 62  STDGHWIASGALDGIINIFDAN-------------------------------------- 83
           S DG +IASGA+DGI+NIFD                                        
Sbjct: 175 SPDGKYIASGAIDGIVNIFDVAGNKLWQTLEGHAMPIRSLCFSPDSQLLLTASDDGHMKL 234

Query: 84  ------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ 130
                       +GH+SWV+S AF+ DGK+F+S S+D TV+VW  A ++ +HTFK H DQ
Sbjct: 235 YDVQHTNVVGTLSGHASWVVSVAFSPDGKYFVSGSSDKTVKVWELASKQCVHTFKEHNDQ 294

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMYS 156
           VW V  +PD  K VSV EDK++++YS
Sbjct: 295 VWGVRFSPDSTKIVSVSEDKSINVYS 320

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91076958|ref|XP_975292.1| PREDICTED: similar to AGAP007626-PA [Tribolium castaneum]

 Score =  181 bits (458), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 94/206 (45%), Positives = 124/206 (60%), Gaps = 51/206 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           K+I+ ++VGPV++W V FSPDDKY++SGS +GKI +Y VET K EQ  DTRGK+ LSIAY
Sbjct: 138 KKIAHVDVGPVELWTVAFSPDDKYIISGSHAGKITVYNVETAKAEQTLDTRGKYILSIAY 197

Query: 62  STDGHWIASGALDGIINIFDAN-------------------------------------- 83
           S DG +IASGA+DGI+NIFD                                        
Sbjct: 198 SPDGKYIASGAIDGIVNIFDVAGNKLWQTLEGHAMPIRSLCFSPDSQLLLTASDDGHMKL 257

Query: 84  ------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ 130
                       +GH+SWV+S AF+ DGK+F+S S+D TV+VW  A ++ +HTFK H DQ
Sbjct: 258 YDVQHTNVVGTLSGHASWVVSVAFSPDGKYFVSGSSDKTVKVWELASKQCVHTFKEHNDQ 317

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMYS 156
           VW V  +PD  K VSV EDK++++YS
Sbjct: 318 VWGVRFSPDSTKIVSVSEDKSINVYS 343

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307209889|gb|EFN86668.1| WD repeat-containing protein 61 [Harpegnathos saltator]

 Score =  178 bits (452), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 96/206 (46%), Positives = 125/206 (60%), Gaps = 53/206 (25%)

Query: 3   QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAY 61
           ++S I VGPVD+W VVFSPDDK+V+SGS +GKI+LYGVE+GK EQ  DTR GKFTLS+AY
Sbjct: 115 KLSNIEVGPVDIWTVVFSPDDKFVVSGSHAGKIHLYGVESGKQEQTLDTRGGKFTLSVAY 174

Query: 62  STDGHWIASGALDGIINIFDAN-------------------------------------- 83
           S DG +IASGA+DGIINIFD                                        
Sbjct: 175 SPDGKYIASGAIDGIINIFDVTYGKVLRTLEGHAMPIRSLCFSPDSQLLLTASDDGHMKL 234

Query: 84  ------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ 130
                       +GH+SWVL  AF++DG+ F S+S+DHTV++W  ARR+ +HTF+ H DQ
Sbjct: 235 YDVKDANLAGTMSGHASWVLGVAFSQDGQQFASSSSDHTVKIWELARRQCLHTFREHNDQ 294

Query: 131 VWCVCVAPDGDKFV-SVGEDKAVHMY 155
           VW V   P  +  + SV EDK++++Y
Sbjct: 295 VWAVKYNPQKNNVIASVSEDKSINLY 320

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158285326|ref|XP_564611.3| AGAP007626-PA [Anopheles gambiae str. PEST] gi|157019938|gb|EAL41742.3| AGAP007626-PA [Anopheles gambiae str. PEST]

 Score =  178 bits (451), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 96/208 (46%), Positives = 123/208 (59%), Gaps = 52/208 (25%)

Query: 4   ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYS 62
           +++I+VGPVD+W V FSP DKY++SGS  GKI+LY VETGK EQ+ D + GKFTLSIAYS
Sbjct: 126 MNQISVGPVDLWTVAFSPCDKYIISGSHEGKISLYSVETGKAEQVLDPQNGKFTLSIAYS 185

Query: 63  TDGHWIASGALDGIINIFDAN--------------------------------------- 83
            DG +IASGA+DGIINIFD                                         
Sbjct: 186 PDGKYIASGAIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLY 245

Query: 84  -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQV 131
                      +GH+SWVLS +F+ DGK F S+S+D TV++WN A R+ +HTF +HADQV
Sbjct: 246 DVAHSDVVGTLSGHASWVLSVSFSGDGKNFASSSSDKTVKIWNVAERQCLHTFTEHADQV 305

Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
           W V  +PD    +SV EDK ++MY   P
Sbjct: 306 WGVRYSPDSANVISVSEDKCINMYDCPP 333

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242016915|ref|XP_002428940.1| WD-repeat protein, putative [Pediculus humanus corporis] gi|212513769|gb|EEB16202.1| WD-repeat protein, putative [Pediculus humanus corporis]

 Score =  176 bits (446), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 96/205 (46%), Positives = 123/205 (60%), Gaps = 51/205 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           +++  I+VGPVD+W V FSPDDKY++SGS  GKIN+YGVE+ K EQ  DTRGKFTLSIAY
Sbjct: 113 EKLGSIDVGPVDIWTVAFSPDDKYIISGSHFGKINIYGVESKKQEQNLDTRGKFTLSIAY 172

Query: 62  STDGHWIASGALDGIINIFD---------------------------------------- 81
           S DG +IASGA+DGIINIFD                                        
Sbjct: 173 SPDGKYIASGAIDGIINIFDVASAKLVHTLEGHALPIRSLCFSPDSQLLLTASDDGHMKL 232

Query: 82  -----AN-----TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQ 130
                AN     +GH+SWVLS AF+     F+S+S+DH+V++W  + R  +HTF +H DQ
Sbjct: 233 YDVQHANVVDTLSGHASWVLSVAFSPHNTHFVSSSSDHSVKIWELSTRSCIHTFSEHQDQ 292

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V   PDGDK VSV +DK++ +Y
Sbjct: 293 VWGVKYNPDGDKVVSVSDDKSIIIY 317

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|13173175|gb|AAK14331.1|AF326340_1 unknown protein i8 [Aedes aegypti]

 Score =  176 bits (446), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 123/208 (59%), Gaps = 52/208 (25%)

Query: 4   ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYS 62
           +++I++GPVD+W V FSP DKY++SGS  GKI+LY VE+GK EQ+ D + GKFTLSIAYS
Sbjct: 125 LNQISLGPVDLWTVAFSPCDKYIISGSHEGKISLYSVESGKPEQVLDPQNGKFTLSIAYS 184

Query: 63  TDGHWIASGALDGIINIFDAN--------------------------------------- 83
            DG +IASGA+DGIINIFD                                         
Sbjct: 185 PDGKYIASGAIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLY 244

Query: 84  -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
                      +GHSSWVLS +F+ DGK F S+S+D TV++WN A R+ +HTF+ H DQV
Sbjct: 245 DVAHSDVVGTLSGHSSWVLSVSFSGDGKSFTSSSSDKTVKIWNVAERQCLHTFEDHQDQV 304

Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
           W V  +PD  K +SV ED+ V++Y   P
Sbjct: 305 WGVKYSPDSSKVISVSEDRCVNLYDCPP 332

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19335616|gb|AAL85577.1| unknown protein [Aedes aegypti]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 123/208 (59%), Gaps = 52/208 (25%)

Query: 4   ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYS 62
           +++I++GPVD+W V FSP DKY++SGS  GKI+LY VE+GK EQ+ D + GKFTLSIAYS
Sbjct: 125 LNQISLGPVDLWTVAFSPCDKYIISGSHEGKISLYSVESGKPEQVLDPQNGKFTLSIAYS 184

Query: 63  TDGHWIASGALDGIINIFDAN--------------------------------------- 83
            DG +IASGA+DGIINIFD                                         
Sbjct: 185 PDGKYIASGAIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLY 244

Query: 84  -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
                      +GHSSWVLS +F+ DGK F S+S+D TV++WN A R+ +HTF+ H DQV
Sbjct: 245 DVAHSDVVGTLSGHSSWVLSVSFSGDGKSFTSSSSDKTVKIWNVAERQCLHTFEDHQDQV 304

Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
           W V  +PD  K +SV ED+ V++Y   P
Sbjct: 305 WGVKYSPDSSKVISVSEDRCVNLYDCPP 332

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157109057|ref|XP_001650506.1| hypothetical protein AaeL_AAEL005208 [Aedes aegypti] gi|13173173|gb|AAK14330.1|AF326339_1 unknown protein i8 [Aedes aegypti] gi|108879158|gb|EAT43383.1| AAEL005208-PA [Aedes aegypti]

 Score =  176 bits (445), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 123/208 (59%), Gaps = 52/208 (25%)

Query: 4   ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYS 62
           +++I++GPVD+W V FSP DKY++SGS  GKI+LY VE+GK EQ+ D + GKFTLSIAYS
Sbjct: 125 LNQISLGPVDLWTVAFSPCDKYIISGSHEGKISLYSVESGKPEQVLDPQNGKFTLSIAYS 184

Query: 63  TDGHWIASGALDGIINIFDAN--------------------------------------- 83
            DG +IASGA+DGIINIFD                                         
Sbjct: 185 PDGKYIASGAIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLY 244

Query: 84  -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
                      +GHSSWVLS +F+ DGK F S+S+D TV++WN A R+ +HTF+ H DQV
Sbjct: 245 DVAHSDVVGTLSGHSSWVLSVSFSGDGKSFTSSSSDKTVKIWNVAERQCLHTFEDHQDQV 304

Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
           W V  +PD  K +SV ED+ V++Y   P
Sbjct: 305 WGVKYSPDSSKVISVSEDRCVNLYDCPP 332

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|240848544|ref|NP_001155608.1| WD repeat domain 61-like [Acyrthosiphon pisum] gi|239788565|dbj|BAH70957.1| ACYPI005157 [Acyrthosiphon pisum]

 Score =  175 bits (444), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 93/206 (45%), Positives = 119/206 (57%), Gaps = 51/206 (24%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           ++I   ++GPV++W + FSPDD Y++SGS SGKINL+GVETGK EQ FDTRGKFTLSIAY
Sbjct: 116 EKIKTFSIGPVELWTIAFSPDDNYIISGSHSGKINLFGVETGKQEQTFDTRGKFTLSIAY 175

Query: 62  STDGHWIASGALDGIINIFD---------------------------------------- 81
           S DG +IA GALDGIIN+FD                                        
Sbjct: 176 SPDGKYIACGALDGIINVFDVLSGKLTHTLEGHAMPIRSLCFSSDSKYLLTGADDGQMKI 235

Query: 82  ----------ANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ 130
                       +GH SWVLS  F+ D K F+S SAD+TV+VW+   R  ++T K H D+
Sbjct: 236 YAVHHAEVLGTVSGHGSWVLSVDFSPDCKSFVSGSADNTVKVWDVTNRSCLNTLKEHKDK 295

Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMYS 156
           VWCV     GDK VSV +D ++++YS
Sbjct: 296 VWCVKYNSTGDKMVSVSDDASINIYS 321

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|19335618|gb|AAL85578.1| unknown protein [Aedes aegypti]

 Score =  175 bits (444), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 94/208 (45%), Positives = 122/208 (58%), Gaps = 52/208 (25%)

Query: 4   ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYS 62
           +++I++GPVD+W V FSP DKY++SGS  GKI+LY VE+GK EQ+ D   GKFTLSIAYS
Sbjct: 125 LNQISLGPVDLWTVAFSPCDKYIISGSHEGKISLYSVESGKPEQVLDPANGKFTLSIAYS 184

Query: 63  TDGHWIASGALDGIINIFDAN--------------------------------------- 83
            DG +IASGA+DGIINIFD                                         
Sbjct: 185 PDGKYIASGAIDGIINIFDVAAGKVAQTLEGHAMSVRSLCFSPDSQMLLTASDDGHMKLY 244

Query: 84  -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV 131
                      +GHSSWVLS +F+ DGK F S+S+D TV++WN A R+ +HTF+ H DQV
Sbjct: 245 DVAHSDVVGTLSGHSSWVLSVSFSGDGKSFTSSSSDKTVKIWNVAERQCLHTFEDHQDQV 304

Query: 132 WCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
           W V  +PD  K +SV ED+ V++Y   P
Sbjct: 305 WGVKYSPDSSKVISVSEDRCVNLYDCPP 332

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	181
ZFIN|ZDB-GENE-040426-1851	305	wdr61 "WD repeat domain 61" [D	0.850	0.504	0.441	3.7e-32
UNIPROTKB|Q6GMD2	305	wdr61 "WD repeat-containing pr	0.850	0.504	0.447	1.6e-31
UNIPROTKB|F1NFT8	305	WDR61 "WD repeat-containing pr	0.850	0.504	0.441	2.6e-31
UNIPROTKB|Q5ZJH5	305	WDR61 "WD repeat-containing pr	0.850	0.504	0.441	2.6e-31
UNIPROTKB|Q6PBD6	305	wdr61 "WD repeat-containing pr	0.850	0.504	0.447	2.6e-31
UNIPROTKB|F1RKU4	287	WDR61 "Uncharacterized protein	0.850	0.536	0.441	2.6e-31
UNIPROTKB|Q32LN7	305	WDR61 "WD repeat-containing pr	0.850	0.504	0.441	2.6e-31
UNIPROTKB|Q9GZS3	305	WDR61 "WD repeat-containing pr	0.850	0.504	0.441	2.6e-31
UNIPROTKB|E2RBV0	305	WDR61 "Uncharacterized protein	0.850	0.504	0.441	2.6e-31
UNIPROTKB|H0YN81	294	WDR61 "WD repeat-containing pr	0.850	0.523	0.441	2.6e-31

ZFIN|ZDB-GENE-040426-1851 wdr61 "WD repeat domain 61" [Danio rerio (taxid:7955)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  ++ GPVD W V FSPD KY+ +GS  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    97 KQIKSMDAGPVDAWTVAFSPDSKYIATGSHLGKVNIFGVESGKKEHSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   H   V  V  +PD   FVS   DK++ ++
Sbjct:   217 YDVQHANLAGTLSGHGSWVLSVAFSPDDTHFVSSSSDKSIKVW 259

GO:0003674 "molecular_function" evidence=ND

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

UNIPROTKB|Q6GMD2 wdr61 "WD repeat-containing protein 61" [Xenopus laevis (taxid:8355)]

 Score = 346 (126.9 bits), Expect = 1.6e-31, P = 1.6e-31
 Identities = 73/163 (44%), Positives = 100/163 (61%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W+V FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct:    97 KQIRSIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSTDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   H   V  V  +PD   FVS   DK+V ++
Sbjct:   217 YDVQHASLAATLSGHGSWVLNVAFSPDDAHFVSSSSDKSVKVW 259

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

UNIPROTKB|F1NFT8 WDR61 "WD repeat-containing protein 61" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W++ FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   H   V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHGSWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0055087 "Ski complex" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IEA

UNIPROTKB|Q5ZJH5 WDR61 "WD repeat-containing protein 61" [Gallus gallus (taxid:9031)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W++ FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWSLAFSPDSQFLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   H   V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHGSWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

UNIPROTKB|Q6PBD6 wdr61 "WD repeat-containing protein 61" [Xenopus (Silurana) tropicalis (taxid:8364)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 73/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W+V FSPD +++ +GS  GK+N++GVETGK E   DTRGKF LSIAY
Sbjct:    97 KQIRAIDAGPVDAWSVAFSPDSQHLATGSHVGKVNIFGVETGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             +         T   H   V  V  +PD   FVS   DK+V ++
Sbjct:   217 YEVQHASLAATLSGHGSWVLNVAFSPDDTHFVSSSSDKSVKVW 259

GO:0005634 "nucleus" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

UNIPROTKB|F1RKU4 WDR61 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    79 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 138

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   139 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 198

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   HA  V  V   PD   FVS   DK+V ++
Sbjct:   199 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 241

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:0055087 "Ski complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

UNIPROTKB|Q32LN7 WDR61 "WD repeat-containing protein 61" [Bos taurus (taxid:9913)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   HA  V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:0080182 "histone H3-K4 trimethylation" evidence=ISS

GO:0055087 "Ski complex" evidence=ISS

GO:0035327 "transcriptionally active chromatin" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0005634 "nucleus" evidence=ISS

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=ISS

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=ISS

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=ISS

GO:0016593 "Cdc73/Paf1 complex" evidence=ISS

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=ISS

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=ISS

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0006351 "transcription, DNA-dependent" evidence=IEA

UNIPROTKB|Q9GZS3 WDR61 "WD repeat-containing protein 61" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   HA  V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:0006351 "transcription, DNA-dependent" evidence=IEA

GO:0016055 "Wnt receptor signaling pathway" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IDA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IDA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IDA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IDA

GO:0055087 "Ski complex" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0035327 "transcriptionally active chromatin" evidence=IDA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IMP

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IMP

GO:0080182 "histone H3-K4 trimethylation" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005730 "nucleolus" evidence=IDA

UNIPROTKB|E2RBV0 WDR61 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   HA  V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:2001162 "positive regulation of histone H3-K79 methylation" evidence=IEA

GO:0080182 "histone H3-K4 trimethylation" evidence=IEA

GO:0055087 "Ski complex" evidence=IEA

GO:0051571 "positive regulation of histone H3-K4 methylation" evidence=IEA

GO:0045944 "positive regulation of transcription from RNA polymerase II promoter" evidence=IEA

GO:0045638 "negative regulation of myeloid cell differentiation" evidence=IEA

GO:0035327 "transcriptionally active chromatin" evidence=IEA

GO:0032968 "positive regulation of transcription elongation from RNA polymerase II promoter" evidence=IEA

GO:0016593 "Cdc73/Paf1 complex" evidence=IEA

UNIPROTKB|H0YN81 WDR61 "WD repeat-containing protein 61" [Homo sapiens (taxid:9606)]

 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 72/163 (44%), Positives = 99/163 (60%)

Query:     2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct:    97 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 156

Query:    62 STDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRV 113
             S DG ++ASGA+DGIINIFD  TG        H+  + S  F+ D +  ++AS D  +++
Sbjct:   157 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 216

Query:   114 WNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             ++        T   HA  V  V   PD   FVS   DK+V ++
Sbjct:   217 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVW 259

GO:0005634 "nucleus" evidence=IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	181
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	9e-31
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	6e-29
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	3e-28
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-26
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-21
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	2e-20
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	3e-19
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	7e-18
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	4e-14
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	2e-10
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	1e-07
smart00320	40	smart00320, WD40, WD40 repeats	3e-07
COG2319	466	COG2319, COG2319, FOG: WD40 repeat [General functi	1e-05
COG4946	668	COG4946, COG4946, Uncharacterized protein related	3e-05
pfam00400	39	pfam00400, WD40, WD domain, G-beta repeat	0.001
smart00320	40	smart00320, WD40, WD40 repeats	0.001
cd00200	289	cd00200, WD40, WD40 domain, found in a number of e	0.003
smart00320	40	smart00320, WD40, WD40 repeats	0.003

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  112 bits (283), Expect = 9e-31
 Identities = 50/151 (33%), Positives = 73/151 (48%), Gaps = 9/151 (5%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
            +V FSPD  +V S SQ G I L+ + TGK             S+A+S DG  + S + D
Sbjct: 139 NSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198

Query: 75  GIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
           G I ++D +T        GH + V S AF+ DG    S S D T+RVW+    E + T  
Sbjct: 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLS 258

Query: 127 -HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            H + V  +  +PDG +  S   D  + ++ 
Sbjct: 259 GHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  107 bits (270), Expect = 6e-29
 Identities = 48/164 (29%), Positives = 81/164 (49%), Gaps = 9/164 (5%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
           + +V  S D  Y+ SGS    I L+ +ETG+  +       +  S+A+S DG  ++S + 
Sbjct: 54  VRDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSR 113

Query: 74  DGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
           D  I ++D  T        GH+ WV S AF+ DG F  S+S D T+++W+    + + T 
Sbjct: 114 DKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATL 173

Query: 126 K-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
             H  +V  V  +PDG+K +S   D  + ++     + +    G
Sbjct: 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRG 217

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  106 bits (266), Expect = 3e-28
 Identities = 50/158 (31%), Positives = 84/158 (53%), Gaps = 9/158 (5%)

Query: 17  VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
           V FSPD + + S S+   I ++ VETGK          +  S+A+S DG ++AS + DG 
Sbjct: 99  VAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGT 158

Query: 77  INIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-H 127
           I ++D  T        GH+  V S AF+ DG+  +S+S+D T+++W+ +  + + T + H
Sbjct: 159 IKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGH 218

Query: 128 ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
            + V  V  +PDG    S  ED  + ++  +  E V+ 
Sbjct: 219 ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQT 256

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score =  101 bits (253), Expect = 2e-26
 Identities = 51/158 (32%), Positives = 82/158 (51%), Gaps = 9/158 (5%)

Query: 17  VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
           V FSPD K + +GS  G I ++ +ETG+L +           +A S DG ++ASG+ D  
Sbjct: 15  VAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKT 74

Query: 77  INIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-H 127
           I ++D  T        GH+S+V S AF+ DG+   S+S D T++VW+    + + T + H
Sbjct: 75  IRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGH 134

Query: 128 ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
            D V  V  +PDG    S  +D  + ++  +  + V  
Sbjct: 135 TDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVAT 172

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 90.1 bits (222), Expect = 2e-21
 Identities = 55/186 (29%), Positives = 82/186 (44%), Gaps = 14/186 (7%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQS-GKINLYGVETGKLEQIFDTRGKFTLSIA 60
           K I  +      + ++ FSPD K + SGS   G I L+ + TGK             S+A
Sbjct: 146 KLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLA 205

Query: 61  YSTDGHW-IASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADHT 110
           +S DG   IASG+ DG I ++D +TG         HS  V+S +F+ DG    S S+D T
Sbjct: 206 FSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVS-SFSPDGSLLASGSSDGT 264

Query: 111 VRVWNFA--RRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
           +R+W+             H+  V  V  +PDG    S   D  V ++  +  + +     
Sbjct: 265 IRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSLTL 324

Query: 169 GGEEEE 174
            G E  
Sbjct: 325 KGHEGP 330

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 85.5 bits (212), Expect = 2e-20
 Identities = 42/111 (37%), Positives = 63/111 (56%), Gaps = 8/111 (7%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
           ++ +V FSPD + +LS S  G I L+ + TGK             S+A+S DG+ +ASG+
Sbjct: 179 EVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGS 238

Query: 73  LDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
            DG I ++D  T        GH++ V S A++ DGK   S SAD T+R+W+
Sbjct: 239 EDGTIRVWDLRTGECVQTLSGHTNSVTSLAWSPDGKRLASGSADGTIRIWD 289

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 83.6 bits (205), Expect = 3e-19
 Identities = 49/183 (26%), Positives = 74/183 (40%), Gaps = 12/183 (6%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIA 60
           K +     G  D     FSPD   + SGS  G I L+ + +   L +         LS+A
Sbjct: 232 KLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVA 291

Query: 61  YSTDGHWIASGALDGIINIFDANT----------GHSSWVLSTAFTRDG-KFFISASADH 109
           +S DG  +ASG+ DG + ++D  T          GH   V S +F+ DG       S D 
Sbjct: 292 FSPDGKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDG 351

Query: 110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG 169
           T+R+W+    + + T +    V  V  +PDG    S   D  V ++       +    G 
Sbjct: 352 TIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGSTDGTVRLWDLSTGSLLRNLDGH 411

Query: 170 GEE 172
              
Sbjct: 412 TSR 414

Length = 466

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 78.5 bits (194), Expect = 7e-18
 Identities = 33/109 (30%), Positives = 52/109 (47%), Gaps = 9/109 (8%)

Query: 57  LSIAYSTDGHWIASGALDGIINIFD--------ANTGHSSWVLSTAFTRDGKFFISASAD 108
             +A+S DG  +A+G+ DG I ++D           GH+  V   A + DG +  S S+D
Sbjct: 13  TCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSD 72

Query: 109 HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            T+R+W+    E + T   H   V  V  +PDG    S   DK + ++ 
Sbjct: 73  KTIRLWDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWD 121

Length = 289

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 68.1 bits (167), Expect = 4e-14
 Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 1/81 (1%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK 142
            GH+  V   AF+ DGK   + S D T++VW+    E + T K H   V  V  + DG  
Sbjct: 6   KGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTY 65

Query: 143 FVSVGEDKAVHMYSYKPEEEV 163
             S   DK + ++  +  E V
Sbjct: 66  LASGSSDKTIRLWDLETGECV 86

Length = 289

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 39/110 (35%), Positives = 62/110 (56%), Gaps = 10/110 (9%)

Query: 15  WNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
            ++ FSPD    V  GS  G I L+ + TGK  +  +      LS+++S DG  ++SG+ 
Sbjct: 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKTLEG-HSNVLSVSFSPDGRVVSSGST 390

Query: 74  DGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
           DG + ++D +T        GH+S V S  F+ DGK   S S+D+T+R+W+
Sbjct: 391 DGTVRLWDLSTGSLLRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWD 440

Length = 466

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 45.4 bits (108), Expect = 1e-07
 Identities = 16/32 (50%), Positives = 19/32 (59%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
            GH+  V S AF+ DG    S S D TVRVW+
Sbjct: 8   KGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 44.6 bits (106), Expect = 3e-07
 Identities = 14/32 (43%), Positives = 21/32 (65%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
            GH+  V S AF+ DGK+  S S D T+++W+
Sbjct: 9   KGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only]

 Score = 44.3 bits (103), Expect = 1e-05
 Identities = 24/119 (20%), Positives = 49/119 (41%), Gaps = 8/119 (6%)

Query: 54  KFTLSIAYSTDGHWIASGALDGIINIFDAN----TGHSSWVLSTAFTRDGKFFISASADH 109
              LS+  S  G  + +   D ++++ D +     GH   + S AF+ DG+  +S S+D 
Sbjct: 28  LSLLSLGSSESGILLLALLSDSLVSLPDLSSLLLRGHEDSITSIAFSPDGELLLSGSSDG 87

Query: 110 TVRVWNFARRE---NMHTFKHADQVWCVCVA-PDGDKFVSVGEDKAVHMYSYKPEEEVE 164
           T+++W+    E         H   V  + ++ PDG+  +         +  +      +
Sbjct: 88  TIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWDLSTPGK 146

Length = 466

>gnl|CDD|227282 COG4946, COG4946, Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

 Score = 43.3 bits (102), Expect = 3e-05
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 11/101 (10%)

Query: 20  SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI--- 76
           SPD K V+  +   ++ +  ++ G +  I  +         +  +  WIA    +G    
Sbjct: 410 SPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQ 469

Query: 77  -INIFDANTGH-------SSWVLSTAFTRDGKFFISASADH 109
            I ++D + G        +++  S AF  DG++    SA  
Sbjct: 470 SIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLSARS 510

Length = 668

>gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat

 Score = 34.6 bits (80), Expect = 0.001
 Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 1/39 (2%)

Query: 119 RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            + + T K H   V  V  +PDG+   S  +D  V ++ 
Sbjct: 1   GKLLRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVWD 39

Length = 39

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 35.0 bits (81), Expect = 0.001
 Identities = 11/39 (28%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 119 RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            E + T K H   V  V  +PDG    S  +D  + ++ 
Sbjct: 2   GELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

>gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment

 Score = 36.9 bits (86), Expect = 0.003
 Identities = 12/49 (24%), Positives = 19/49 (38%), Gaps = 1/49 (2%)

Query: 121 NMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
              T K H   V CV  +PDG    +   D  + ++  +  E +    G
Sbjct: 1   LRRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKG 49

Length = 289

>gnl|CDD|197651 smart00320, WD40, WD40 repeats

 Score = 33.8 bits (78), Expect = 0.003
 Identities = 14/40 (35%), Positives = 24/40 (60%)

Query: 42 TGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
          +G+L +          S+A+S DG ++ASG+ DG I ++D
Sbjct: 1  SGELLKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	181
KOG0272|consensus	459		99.98
KOG0271|consensus	480		99.97
KOG0279|consensus	315		99.97
KOG0272|consensus	459		99.97
KOG0263|consensus	707		99.96
KOG0263|consensus	707		99.96
KOG0315|consensus	311		99.96
KOG0286|consensus	343		99.96
KOG0279|consensus	315		99.96
KOG0286|consensus	343		99.95
KOG0266|consensus	456		99.95
KOG0271|consensus	480		99.95
KOG0266|consensus	456		99.94
KOG0284|consensus	464		99.94
KOG0291|consensus	893		99.94
KOG0273|consensus	524		99.93
KOG0285|consensus	460		99.93
KOG0319|consensus	775		99.93
KOG0275|consensus	508		99.93
KOG0645|consensus	312		99.93
PTZ00421	493	coronin; Provisional	99.93
PTZ00420	568	coronin; Provisional	99.92
KOG0295|consensus	406		99.92
KOG0645|consensus	312		99.92
KOG0265|consensus	338		99.92
KOG0284|consensus	464		99.92
KOG0306|consensus	888		99.92
KOG0278|consensus	334		99.92
KOG0296|consensus	399		99.91
KOG0291|consensus	893		99.91
KOG0315|consensus	311		99.91
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.91
KOG0273|consensus	524		99.91
KOG0276|consensus	794		99.91
PTZ00421	493	coronin; Provisional	99.9
KOG0282|consensus	503		99.9
KOG1446|consensus	311		99.9
KOG0640|consensus	430		99.9
KOG0282|consensus	503		99.9
cd00200	289	WD40 WD40 domain, found in a number of eukaryotic	99.9
KOG0283|consensus	712		99.9
KOG0295|consensus	406		99.9
KOG0292|consensus	1202		99.89
KOG0265|consensus	338		99.89
KOG0318|consensus	603		99.89
PTZ00420	568	coronin; Provisional	99.89
PLN00181	793	protein SPA1-RELATED; Provisional	99.89
KOG0293|consensus	519		99.88
KOG0285|consensus	460		99.88
KOG0293|consensus	519		99.88
PLN00181	793	protein SPA1-RELATED; Provisional	99.88
KOG0310|consensus	487		99.88
KOG0316|consensus	307		99.88
KOG0289|consensus	506		99.88
KOG0318|consensus	603		99.88
KOG0276|consensus	794		99.87
KOG0313|consensus	423		99.87
KOG0292|consensus	1202		99.87
KOG0277|consensus	311		99.87
KOG1407|consensus	313		99.87
KOG0640|consensus	430		99.87
KOG0319|consensus	775		99.87
KOG0306|consensus	888		99.87
KOG0275|consensus	508		99.86
KOG0647|consensus	347		99.86
KOG0267|consensus	825		99.86
KOG0289|consensus	506		99.86
KOG0310|consensus	487		99.86
KOG0643|consensus	327		99.86
KOG0973|consensus	942		99.85
KOG0639|consensus	705		99.85
KOG0296|consensus	399		99.85
KOG0277|consensus	311		99.85
KOG0281|consensus	499		99.85
KOG0283|consensus	712		99.84
KOG0973|consensus	942		99.84
KOG0269|consensus	839		99.84
KOG0772|consensus	641		99.84
KOG0643|consensus	327		99.84
KOG0316|consensus	307		99.83
KOG0302|consensus	440		99.83
KOG0305|consensus	484		99.83
KOG1274|consensus	933		99.83
KOG0641|consensus	350		99.83
KOG0264|consensus	422		99.82
KOG0274|consensus	537		99.82
KOG0281|consensus	499		99.82
KOG0294|consensus	362		99.82
KOG0305|consensus	484		99.82
KOG1273|consensus	405		99.81
KOG0268|consensus	433		99.81
KOG1539|consensus	910		99.81
KOG1446|consensus	311		99.81
KOG0288|consensus	459		99.81
KOG0646|consensus	476		99.81
KOG0308|consensus	735		99.8
KOG0772|consensus	641		99.8
KOG0269|consensus	839		99.8
KOG0264|consensus	422		99.8
KOG2096|consensus	420		99.8
KOG0278|consensus	334		99.8
KOG1063|consensus	764		99.79
KOG0294|consensus	362		99.79
KOG4283|consensus	397		99.79
KOG0299|consensus	479		99.79
KOG1036|consensus	323		99.79
KOG0308|consensus	735		99.78
KOG0639|consensus	705		99.78
KOG0274|consensus	537		99.78
KOG2096|consensus	420		99.78
KOG0299|consensus	479		99.77
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.77
KOG0288|consensus	459		99.77
KOG1407|consensus	313		99.77
KOG0300|consensus	481		99.77
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.76
KOG2055|consensus	514		99.76
TIGR03866	300	PQQ_ABC_repeats PQQ-dependent catabolism-associate	99.76
KOG0301|consensus	745		99.75
KOG1332|consensus	299		99.75
KOG0313|consensus	423		99.75
KOG0646|consensus	476		99.75
KOG1332|consensus	299		99.75
KOG0270|consensus	463		99.75
KOG0301|consensus	745		99.74
KOG2055|consensus	514		99.74
KOG0771|consensus	398		99.73
KOG4328|consensus	498		99.73
KOG0300|consensus	481		99.73
KOG2048|consensus	691		99.73
KOG0267|consensus	825		99.72
KOG0647|consensus	347		99.72
KOG0641|consensus	350		99.72
KOG0303|consensus	472		99.72
KOG0321|consensus	720		99.71
KOG1408|consensus	1080		99.69
KOG1036|consensus	323		99.69
KOG1009|consensus	434		99.69
KOG4283|consensus	397		99.69
KOG1538|consensus	1081		99.69
KOG2110|consensus	391		99.66
KOG4378|consensus	673		99.65
KOG1445|consensus	1012		99.65
KOG0268|consensus	433		99.64
KOG1273|consensus	405		99.64
KOG1007|consensus	370		99.64
KOG0302|consensus	440		99.64
KOG2394|consensus	636		99.64
KOG2048|consensus	691		99.63
KOG2445|consensus	361		99.63
KOG0642|consensus	577		99.63
KOG0303|consensus	472		99.62
KOG1274|consensus	933		99.62
PRK02889	427	tolB translocation protein TolB; Provisional	99.62
PRK03629	429	tolB translocation protein TolB; Provisional	99.62
KOG0322|consensus	323		99.6
KOG2106|consensus	626		99.6
PRK05137	435	tolB translocation protein TolB; Provisional	99.6
KOG2394|consensus	636		99.6
PRK01742	429	tolB translocation protein TolB; Provisional	99.6
KOG1034|consensus	385		99.6
KOG2106|consensus	626		99.6
PRK04922	433	tolB translocation protein TolB; Provisional	99.59
KOG0649|consensus	325		99.59
COG2319	466	FOG: WD40 repeat [General function prediction only	99.59
KOG1034|consensus	385		99.59
KOG0650|consensus	733		99.58
KOG0649|consensus	325		99.58
KOG1523|consensus	361		99.58
KOG1445|consensus	1012		99.58
KOG0307|consensus	1049		99.57
KOG1188|consensus	376		99.57
KOG2445|consensus	361		99.57
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.56
KOG0290|consensus	364		99.56
KOG1063|consensus	764		99.56
KOG1408|consensus	1080		99.55
KOG2919|consensus	406		99.55
PRK03629	429	tolB translocation protein TolB; Provisional	99.55
KOG1007|consensus	370		99.55
KOG1272|consensus	545		99.55
PF08662	194	eIF2A: Eukaryotic translation initiation factor eI	99.54
KOG1523|consensus	361		99.54
PRK11028	330	6-phosphogluconolactonase; Provisional	99.54
KOG1188|consensus	376		99.52
PRK11028	330	6-phosphogluconolactonase; Provisional	99.52
PRK00178	430	tolB translocation protein TolB; Provisional	99.52
KOG1009|consensus	434		99.51
PRK01742	429	tolB translocation protein TolB; Provisional	99.49
KOG0321|consensus	720		99.49
KOG4328|consensus	498		99.49
KOG2919|consensus	406		99.47
PRK04922	433	tolB translocation protein TolB; Provisional	99.47
KOG2111|consensus	346		99.47
PRK04792	448	tolB translocation protein TolB; Provisional	99.47
KOG0307|consensus	1049		99.47
KOG1310|consensus	758		99.47
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.47
KOG4378|consensus	673		99.46
PRK01029	428	tolB translocation protein TolB; Provisional	99.45
KOG1538|consensus	1081		99.45
COG2319	466	FOG: WD40 repeat [General function prediction only	99.44
KOG3881|consensus	412		99.44
PRK05137	435	tolB translocation protein TolB; Provisional	99.44
KOG0644|consensus	1113		99.43
KOG1524|consensus	737		99.42
KOG4227|consensus	609		99.41
KOG0642|consensus	577		99.4
KOG1539|consensus	910		99.4
KOG1963|consensus	792		99.4
KOG2110|consensus	391		99.39
PRK02889	427	tolB translocation protein TolB; Provisional	99.39
KOG4497|consensus	447		99.39
KOG2139|consensus	445		99.38
KOG2321|consensus	703		99.38
KOG0270|consensus	463		99.37
KOG1272|consensus	545		99.34
KOG1240|consensus	1431		99.34
KOG0290|consensus	364		99.33
KOG0771|consensus	398		99.32
KOG1524|consensus	737		99.31
KOG2321|consensus	703		99.3
PRK00178	430	tolB translocation protein TolB; Provisional	99.3
TIGR02800	417	propeller_TolB tol-pal system beta propeller repea	99.3
KOG0650|consensus	733		99.3
KOG1587|consensus	555		99.29
KOG1517|consensus	1387		99.29
PRK01029	428	tolB translocation protein TolB; Provisional	99.27
KOG1963|consensus	792		99.25
KOG2139|consensus	445		99.25
PRK04792	448	tolB translocation protein TolB; Provisional	99.24
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	99.24
KOG1310|consensus	758		99.22
KOG0974|consensus	967		99.22
KOG3914|consensus	390		99.22
PF02239	369	Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO	99.22
PRK04043	419	tolB translocation protein TolB; Provisional	99.2
PRK04043	419	tolB translocation protein TolB; Provisional	99.2
KOG4547|consensus	541		99.18
KOG1517|consensus	1387		99.18
KOG0974|consensus	967		99.16
KOG0644|consensus	1113		99.16
KOG4227|consensus	609		99.13
KOG3881|consensus	412		99.13
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.12
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	99.1
PF10282	345	Lactonase: Lactonase, 7-bladed beta-propeller; Int	99.09
KOG2111|consensus	346		99.08
KOG0322|consensus	323		99.07
KOG1587|consensus	555		99.07
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	99.06
KOG1354|consensus	433		99.02
COG4946	668	Uncharacterized protein related to the periplasmic	99.02
KOG2315|consensus	566		99.0
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.97
KOG0280|consensus	339		98.95
KOG1064|consensus	2439		98.95
KOG4547|consensus	541		98.93
COG4946	668	Uncharacterized protein related to the periplasmic	98.93
KOG4532|consensus	344		98.9
KOG1240|consensus	1431		98.89
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	98.87
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	98.84
KOG2695|consensus	425		98.84
KOG4532|consensus	344		98.81
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.74
KOG4497|consensus	447		98.74
KOG0280|consensus	339		98.72
PF00400	39	WD40: WD domain, G-beta repeat; InterPro: IPR01978	98.7
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.67
COG2706	346	3-carboxymuconate cyclase [Carbohydrate transport	98.66
PRK02888	635	nitrous-oxide reductase; Validated	98.66
KOG1334|consensus	559		98.65
KOG2041|consensus	1189		98.65
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.64
PF08450	246	SGL: SMP-30/Gluconolaconase/LRE-like region; Inter	98.63
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.6
KOG1275|consensus	1118		98.59
KOG3914|consensus	390		98.58
KOG1832|consensus	1516		98.58
KOG2315|consensus	566		98.56
KOG1409|consensus	404		98.56
KOG4190|consensus	1034		98.55
TIGR02658	352	TTQ_MADH_Hv methylamine dehydrogenase heavy chain.	98.52
KOG2695|consensus	425		98.52
KOG1409|consensus	404		98.48
KOG1354|consensus	433		98.48
KOG0882|consensus	558		98.45
KOG2314|consensus	698		98.45
PF11768	545	DUF3312: Protein of unknown function (DUF3312); In	98.43
PRK02888	635	nitrous-oxide reductase; Validated	98.41
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	98.38
COG0823	425	TolB Periplasmic component of the Tol biopolymer t	98.37
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	98.31
KOG4714|consensus	319		98.31
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.27
PF15492	282	Nbas_N: Neuroblastoma-amplified sequence, N termin	98.27
KOG1912|consensus	1062		98.27
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.25
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.24
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	98.22
KOG2314|consensus	698		98.22
KOG1645|consensus	463		98.21
KOG1334|consensus	559		98.17
TIGR03300	377	assembly_YfgL outer membrane assembly lipoprotein	98.16
COG3391	381	Uncharacterized conserved protein [Function unknow	98.14
KOG2066|consensus	846		98.12
KOG2066|consensus	846		98.11
PF13360	238	PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A	98.1
KOG4714|consensus	319		98.08
KOG2041|consensus	1189		98.05
PF04762	928	IKI3: IKI3 family; InterPro: IPR006849 Members of	98.03
KOG1064|consensus	2439		97.99
COG3391	381	Uncharacterized conserved protein [Function unknow	97.94
COG5354	561	Uncharacterized protein, contains Trp-Asp (WD) rep	97.92
PRK13616	591	lipoprotein LpqB; Provisional	97.91
PF07433	305	DUF1513: Protein of unknown function (DUF1513); In	97.89
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	97.87
KOG3621|consensus	726		97.85
KOG1645|consensus	463		97.85
KOG1008|consensus	783		97.85
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.8
KOG0309|consensus	1081		97.8
KOG1920|consensus	1265		97.78
KOG4640|consensus	665		97.78
KOG1275|consensus	1118		97.78
KOG3621|consensus	726		97.73
KOG1008|consensus	783		97.71
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.7
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	97.69
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.69
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.68
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	97.68
KOG3617|consensus	1416		97.66
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	97.61
KOG4190|consensus	1034		97.6
PRK11138	394	outer membrane biogenesis protein BamB; Provisiona	97.56
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	97.56
KOG2114|consensus	933		97.55
smart00320	40	WD40 WD40 repeats. Note that these repeats are per	97.54
COG5170	460	CDC55 Serine/threonine protein phosphatase 2A, reg	97.53
KOG4640|consensus	665		97.49
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	97.49
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.46
KOG3617|consensus	1416		97.46
KOG0882|consensus	558		97.46
KOG0309|consensus	1081		97.45
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	97.45
KOG1920|consensus	1265		97.45
KOG2114|consensus	933		97.44
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	97.42
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.38
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	97.37
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	97.34
KOG4649|consensus	354		97.27
KOG1912|consensus	1062		97.25
PF06433	342	Me-amine-dh_H: Methylamine dehydrogenase heavy cha	97.24
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	97.19
cd00216	488	PQQ_DH Dehydrogenases with pyrrolo-quinoline quino	97.16
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	97.16
PF00930	353	DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin	97.14
KOG2444|consensus	238		97.11
PF06977	248	SdiA-regulated: SdiA-regulated; InterPro: IPR00972	97.1
PRK13616	591	lipoprotein LpqB; Provisional	97.05
KOG4649|consensus	354		97.04
KOG2395|consensus	644		97.03
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	97.0
COG3386	307	Gluconolactonase [Carbohydrate transport and metab	96.94
PF12894	47	Apc4_WD40: Anaphase-promoting complex subunit 4 WD	96.93
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	96.92
KOG4499|consensus	310		96.83
PF14783	111	BBS2_Mid: Ciliary BBSome complex subunit 2, middle	96.76
KOG2079|consensus	1206		96.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	96.61
PHA02713	557	hypothetical protein; Provisional	96.59
PF14583	386	Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C	96.51
KOG1832|consensus	1516		96.51
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	96.36
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	96.3
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	96.26
COG3490	366	Uncharacterized protein conserved in bacteria [Fun	96.13
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	96.11
PF08553	794	VID27: VID27 cytoplasmic protein; InterPro: IPR013	96.11
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	96.09
PF02897	414	Peptidase_S9_N: Prolyl oligopeptidase, N-terminal	95.92
TIGR03606	454	non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH	95.82
KOG2079|consensus	1206		95.77
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	95.73
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	95.66
PF10647	253	Gmad1: Lipoprotein LpqB beta-propeller domain; Int	95.58
KOG2247|consensus	615		95.57
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	95.47
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	95.47
PF07676	39	PD40: WD40-like Beta Propeller Repeat; InterPro: I	95.46
PHA02713	557	hypothetical protein; Provisional	95.45
PHA03098	534	kelch-like protein; Provisional	95.4
PF12234	631	Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR0	95.31
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.3
PF08596	395	Lgl_C: Lethal giant larvae(Lgl) like, C-terminal;	95.3
PF00780	275	CNH: CNH domain; InterPro: IPR001180 Based on sequ	95.25
PRK10115	686	protease 2; Provisional	95.23
PF10313	43	DUF2415: Uncharacterised protein domain (DUF2415);	95.22
KOG3630|consensus	1405		95.19
PF03178	321	CPSF_A: CPSF A subunit region; InterPro: IPR004871	95.07
COG4590	733	ABC-type uncharacterized transport system, permeas	95.06
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	95.06
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.98
PHA03098	534	kelch-like protein; Provisional	94.97
PF05096	264	Glu_cyclase_2: Glutamine cyclotransferase; InterPr	94.9
PF14870	302	PSII_BNR: Photosynthesis system II assembly factor	94.86
PF07569	219	Hira: TUP1-like enhancer of split; InterPro: IPR01	94.83
TIGR02276	42	beta_rpt_yvtn 40-residue YVTN family beta-propelle	94.8
PF04841	410	Vps16_N: Vps16, N-terminal region; InterPro: IPR00	94.57
COG5167	776	VID27 Protein involved in vacuole import and degra	94.48
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	94.35
PHA02790	480	Kelch-like protein; Provisional	94.07
PF14655	415	RAB3GAP2_N: Rab3 GTPase-activating protein regulat	93.92
KOG4441|consensus	571		93.9
COG4257	353	Vgb Streptogramin lyase [Defense mechanisms]	93.74
KOG2444|consensus	238		93.5
KOG4441|consensus	571		93.47
COG3204	316	Uncharacterized protein conserved in bacteria [Fun	92.75
PF15390	671	DUF4613: Domain of unknown function (DUF4613)	92.61
TIGR02604	367	Piru_Ver_Nterm putative membrane-bound dehydrogena	92.5
KOG1916|consensus	1283		92.5
KOG2395|consensus	644		92.39
PRK13684	334	Ycf48-like protein; Provisional	92.39
PRK10115	686	protease 2; Provisional	92.35
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	92.33
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	91.91
TIGR03075	527	PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan	91.86
PF05694	461	SBP56: 56kDa selenium binding protein (SBP56); Int	91.66
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	91.54
KOG3630|consensus	1405		90.9
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.83
PF10168	717	Nup88: Nuclear pore component; InterPro: IPR019321	90.62
PF01436	28	NHL: NHL repeat; InterPro: IPR001258 The NHL repea	90.61
COG3823	262	Glutamine cyclotransferase [Posttranslational modi	90.6
KOG4460|consensus	741		90.58
PF07995	331	GSDH: Glucose / Sorbosone dehydrogenase; InterPro:	90.42
KOG1916|consensus	1283		90.37
PF11715	547	Nup160: Nucleoporin Nup120/160; InterPro: IPR02171	90.12
PF03088	89	Str_synth: Strictosidine synthase; InterPro: IPR01	89.85
TIGR03074	764	PQQ_membr_DH membrane-bound PQQ-dependent dehydrog	88.87
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	88.76
KOG4499|consensus	310		88.58
PF13449	326	Phytase-like: Esterase-like activity of phytase	88.36
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	87.74
PF12657	173	TFIIIC_delta: Transcription factor IIIC subunit de	87.31
PHA02790	480	Kelch-like protein; Provisional	86.89
PF14727	418	PHTB1_N: PTHB1 N-terminus	86.84
PF13449	326	Phytase-like: Esterase-like activity of phytase	86.3
KOG1520|consensus	376		85.6
KOG3616|consensus	1636		84.64
PF08728	717	CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans	84.61
PF01731	86	Arylesterase: Arylesterase; InterPro: IPR002640 Th	84.15
PF14761	215	HPS3_N: Hermansky-Pudlak syndrome 3	83.95
smart00564	33	PQQ beta-propeller repeat. Beta-propeller repeat o	83.95
COG5167	776	VID27 Protein involved in vacuole import and degra	83.79
PF07250	243	Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterP	83.64
TIGR02608	55	delta_60_rpt delta-60 repeat domain. This domain o	82.06
PF10214	765	Rrn6: RNA polymerase I-specific transcription-init	82.03
PF02333	381	Phytase: Phytase; InterPro: IPR003431 Phytase (3.1	81.5
PRK13684	334	Ycf48-like protein; Provisional	81.21
KOG2280|consensus	829		80.92
TIGR03118	336	PEPCTERM_chp_1 conserved hypothetical protein TIGR	80.22

>KOG0272|consensus

Probab=99.98  E-value=2.9e-32  Score=204.22  Aligned_cols=167  Identities=26%  Similarity=0.420  Sum_probs=154.7

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +|+.+..+..-|..++|+|+|++|+|++.|.+-++||+.+++.+.....|...+.+++|.+||.++++|+-|..-++||+
T Consensus       253 ~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDl  332 (459)
T KOG0272|consen  253 PLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDL  332 (459)
T ss_pred             chhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeec
Confidence            56777888888999999999999999999999999999999988777888888899999999999999999999999999


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc-CCCEEEEEcCCCcE
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP-DGDKFVSVGEDKAV  152 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp-~g~~l~~~~~d~~v  152 (181)
                      ++        +|...|..++|+|+|.+++||+.|++++|||++....+.+++ |.+-|..++|+| .|++|+++|.|+.+
T Consensus       333 Rtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~  412 (459)
T KOG0272|consen  333 RTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTV  412 (459)
T ss_pred             ccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcce
Confidence            86        488899999999999999999999999999999988888887 888899999999 78899999999999


Q ss_pred             EEEeCCCCeeEEEcCCC
Q psy10953        153 HMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       153 ~i~~~~~~~~~~~~~~~  169 (181)
                      ++|...+++++..+.|.
T Consensus       413 kiWs~~~~~~~ksLaGH  429 (459)
T KOG0272|consen  413 KIWSTRTWSPLKSLAGH  429 (459)
T ss_pred             eeecCCCcccchhhcCC
Confidence            99999999888877764

>KOG0271|consensus

Probab=99.97  E-value=1.8e-30  Score=193.02  Aligned_cols=165  Identities=26%  Similarity=0.420  Sum_probs=146.5

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      -+.+..+...|.+++|+|+|++|++|+.|.++|+||+.+.........|..++.+++|+|||++|++|+.||.|.+||.+
T Consensus       108 ssS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpk  187 (480)
T KOG0271|consen  108 SSSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPK  187 (480)
T ss_pred             ccccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCC
Confidence            45677888889999999999999999999999999999999888888899999999999999999999999999999986


Q ss_pred             C---------CCcccEEEEEEcC-----CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         84 T---------GHSSWVLSTAFTR-----DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        84 ~---------~~~~~v~~~~~s~-----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +         +|..+|++++|.|     ..+.|++++.||+++|||+..+.++..+. |+..|+|+++--+| +|+++|.
T Consensus       188 tg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~g-liySgS~  266 (480)
T KOG0271|consen  188 TGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEG-LIYSGSQ  266 (480)
T ss_pred             CCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCc-eEEecCC
Confidence            4         5888999999987     46799999999999999999988777664 99999999997554 8999999


Q ss_pred             CCcEEEEeCCCCeeEEEcCCC
Q psy10953        149 DKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      |++|++|+...|..++.+.|.
T Consensus       267 DrtIkvw~a~dG~~~r~lkGH  287 (480)
T KOG0271|consen  267 DRTIKVWRALDGKLCRELKGH  287 (480)
T ss_pred             CceEEEEEccchhHHHhhccc
Confidence            999999999887666555553

>KOG0279|consensus

Probab=99.97  E-value=1.5e-29  Score=181.19  Aligned_cols=165  Identities=30%  Similarity=0.455  Sum_probs=149.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..++..+.--+.+++.++||++.++++.|+++++||+.+++..+.|..|...+.+++|++|.+++++|+.|+++.+|+..
T Consensus        56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~  135 (315)
T KOG0279|consen   56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTL  135 (315)
T ss_pred             eeeeeccceEecceEEccCCceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeec
Confidence            45677788889999999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             C---------CCcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         84 T---------GHSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        84 ~---------~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      .         .+..+|.++.|+|+  .-.+++++.|+++++||+++.+....+. |.+.++.+++||||..+++|+.|+.
T Consensus       136 g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~  215 (315)
T KOG0279|consen  136 GVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGE  215 (315)
T ss_pred             ccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCce
Confidence            3         24789999999998  4589999999999999999988777665 8889999999999999999999999


Q ss_pred             EEEEeCCCCeeEEEcCC
Q psy10953        152 VHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       152 v~i~~~~~~~~~~~~~~  168 (181)
                      +.+||+..++.+.-.++
T Consensus       216 ~~LwdL~~~k~lysl~a  232 (315)
T KOG0279|consen  216 AMLWDLNEGKNLYSLEA  232 (315)
T ss_pred             EEEEEccCCceeEeccC
Confidence            99999998877655444

>KOG0272|consensus

Probab=99.97  E-value=3.6e-30  Score=193.00  Aligned_cols=154  Identities=21%  Similarity=0.434  Sum_probs=144.1

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++-....+...+++|+|.|||.++++|+.|..-++||+++++.+..+..|...+.++.|+|+|..|++|+.|++++|||+
T Consensus       295 ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDL  374 (459)
T KOG0272|consen  295 ELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDL  374 (459)
T ss_pred             hhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeee
Confidence            34456678889999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC--------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         83 NT--------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      +.        +|.+-|..+.|+| .|++|+|++.|.++++|..++..++.++. |.++|.++.++||++.+++++.|+++
T Consensus       375 R~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe~kV~s~Dis~d~~~i~t~s~DRT~  454 (459)
T KOG0272|consen  375 RMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHEGKVISLDISPDSQAIATSSFDRTI  454 (459)
T ss_pred             cccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCccceEEEEeccCCceEEEeccCcee
Confidence            74        5788899999999 68899999999999999999999998886 99999999999999999999999999


Q ss_pred             EEEe
Q psy10953        153 HMYS  156 (181)
Q Consensus       153 ~i~~  156 (181)
                      ++|.
T Consensus       455 KLW~  458 (459)
T KOG0272|consen  455 KLWR  458 (459)
T ss_pred             eecc
Confidence            9996

>KOG0263|consensus

Probab=99.96  E-value=3.4e-29  Score=199.38  Aligned_cols=156  Identities=21%  Similarity=0.471  Sum_probs=144.4

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..-..+..+||++.|+|.|-++||++.|++.++|.....+.++++..|-..+-|+.|+|+..++++|+.|.+|++||+.
T Consensus       486 ~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~  565 (707)
T KOG0263|consen  486 LVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVS  565 (707)
T ss_pred             EEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcC
Confidence            34445788889999999999999999999999999999999999999888778899999999999999999999999986


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      +        ||+.+|.+++|||+|++|++|+.|+.|++||+..++.+.++. |.+.|.++.||.+|..||+++.|+.|++
T Consensus       566 ~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~l  645 (707)
T KOG0263|consen  566 TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRL  645 (707)
T ss_pred             CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEE
Confidence            4        689999999999999999999999999999999998887774 8889999999999999999999999999


Q ss_pred             EeCCC
Q psy10953        155 YSYKP  159 (181)
Q Consensus       155 ~~~~~  159 (181)
                      ||+..
T Consensus       646 WD~~~  650 (707)
T KOG0263|consen  646 WDLTK  650 (707)
T ss_pred             EEchh
Confidence            99853

>KOG0263|consensus

Probab=99.96  E-value=7.8e-29  Score=197.33  Aligned_cols=161  Identities=20%  Similarity=0.391  Sum_probs=149.0

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC-
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN-   83 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~-   83 (181)
                      ..+..+...|+.++|+|+.++|++++.|+++|+|.+.+...+..+..|..++..+.|+|.|.+|++++.|++.++|... 
T Consensus       445 ~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~  524 (707)
T KOG0263|consen  445 RTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDH  524 (707)
T ss_pred             EEeecCCCceeeeeecccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeeccc
Confidence            3467788889999999999999999999999999999999999999999999999999999999999999999999865 


Q ss_pred             -------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         84 -------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        84 -------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                             -+|.+.|.++.|+|+..++++|+.|+++++||..++..+..+. |..+|.+++|||+|++|++|+.|+.|.+|
T Consensus       525 ~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iW  604 (707)
T KOG0263|consen  525 NKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIW  604 (707)
T ss_pred             CCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEE
Confidence                   3678889999999999999999999999999999999888886 89999999999999999999999999999


Q ss_pred             eCCCCeeEEE
Q psy10953        156 SYKPEEEVEV  165 (181)
Q Consensus       156 ~~~~~~~~~~  165 (181)
                      |+..+..+..
T Consensus       605 Dl~~~~~v~~  614 (707)
T KOG0263|consen  605 DLANGSLVKQ  614 (707)
T ss_pred             EcCCCcchhh
Confidence            9988765543

>KOG0315|consensus

Probab=99.96  E-value=1.7e-27  Score=168.58  Aligned_cols=166  Identities=19%  Similarity=0.388  Sum_probs=139.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..+..+.+.|..+.|..+|+++++|+.||++++||++.-...+.++.. ..+.++..+|+...|+++..+|.|++||+
T Consensus        75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~-spVn~vvlhpnQteLis~dqsg~irvWDl  153 (311)
T KOG0315|consen   75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN-SPVNTVVLHPNQTELISGDQSGNIRVWDL  153 (311)
T ss_pred             ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcccchhccCC-CCcceEEecCCcceEEeecCCCcEEEEEc
Confidence            56777788888999999999999999999999999999986665666544 44667888888888888888888888886


Q ss_pred             CC---------------------------------------------------------CCcccEEEEEEcCCCCEEEEE
Q psy10953         83 NT---------------------------------------------------------GHSSWVLSTAFTRDGKFFISA  105 (181)
Q Consensus        83 ~~---------------------------------------------------------~~~~~v~~~~~s~~~~~l~~~  105 (181)
                      ..                                                         .|.+.+..+.+||++++|+++
T Consensus       154 ~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~  233 (311)
T KOG0315|consen  154 GENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATC  233 (311)
T ss_pred             cCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEee
Confidence            41                                                         144567888999999999999


Q ss_pred             eCCCcEEEEecCCC-ceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        106 SADHTVRVWNFARR-ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       106 ~~d~~i~v~d~~~~-~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      +.|++++||+..+. +.-..+. |...+|.++||.||++|++++.|+.+++|++..+++++...|.
T Consensus       234 ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh  299 (311)
T KOG0315|consen  234 SSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH  299 (311)
T ss_pred             cCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence            99999999999876 2222333 6678999999999999999999999999999999988877764

>KOG0286|consensus

Probab=99.96  E-value=3.4e-27  Score=170.28  Aligned_cols=165  Identities=24%  Similarity=0.483  Sum_probs=148.3

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      -..+..+..+++++.|++|.++++++++||.+.+||.-+....+.+.....+++.++|+|.|+.++.|+-|+...+|++.
T Consensus        48 rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg~~VAcGGLdN~Csiy~ls  127 (343)
T KOG0286|consen   48 RRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSGNFVACGGLDNKCSIYPLS  127 (343)
T ss_pred             EEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCCCeEEecCcCceeEEEecc
Confidence            34567788899999999999999999999999999999888888888888889999999999999888888888888753


Q ss_pred             C-------------------------------------------------------CCcccEEEEEEcC-CCCEEEEEeC
Q psy10953         84 T-------------------------------------------------------GHSSWVLSTAFTR-DGKFFISASA  107 (181)
Q Consensus        84 ~-------------------------------------------------------~~~~~v~~~~~s~-~~~~l~~~~~  107 (181)
                      +                                                       +|.+.|.++.++| +++.+++|+.
T Consensus       128 ~~d~~g~~~v~r~l~gHtgylScC~f~dD~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~c  207 (343)
T KOG0286|consen  128 TRDAEGNVRVSRELAGHTGYLSCCRFLDDNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGC  207 (343)
T ss_pred             cccccccceeeeeecCccceeEEEEEcCCCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEeccc
Confidence            1                                                       3566788999999 8999999999


Q ss_pred             CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        108 DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       108 d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      |+..++||++.+....+|. |...|++++|.|+|..|++|+.|+..++||++.++++.+..+
T Consensus       208 D~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~  269 (343)
T KOG0286|consen  208 DKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH  269 (343)
T ss_pred             ccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence            9999999999999888886 889999999999999999999999999999999999887764

>KOG0279|consensus

Probab=99.96  E-value=1.8e-27  Score=170.66  Aligned_cols=161  Identities=19%  Similarity=0.383  Sum_probs=140.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCC--CCEEEEeeCCCcEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTD--GHWIASGALDGIINI   79 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d--~~~l~~~~~d~~v~i   79 (181)
                      ..+++..+..+|.+++|+||.+.+++|+.|.+|++|++.++......... ..++.+++|+|.  .-.|++++.|++|++
T Consensus        97 ~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKv  176 (315)
T KOG0279|consen   97 STRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKV  176 (315)
T ss_pred             EEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEE
Confidence            46778889999999999999999999999999999999876655554443 677889999998  678999999999999


Q ss_pred             EeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         80 FDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        80 ~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      ||+++        +|..+++.+++||||.++++|+.||.+.+||++.++.+..+.+...|.+++|+|+.-.|+ .+.+..
T Consensus       177 Wnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a~~~v~sl~fspnrywL~-~at~~s  255 (315)
T KOG0279|consen  177 WNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEAFDIVNSLCFSPNRYWLC-AATATS  255 (315)
T ss_pred             EccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccCCCeEeeEEecCCceeEe-eccCCc
Confidence            99974        678899999999999999999999999999999999998889999999999999965555 445667


Q ss_pred             EEEEeCCCCeeEE
Q psy10953        152 VHMYSYKPEEEVE  164 (181)
Q Consensus       152 v~i~~~~~~~~~~  164 (181)
                      |+||++.++..++
T Consensus       256 IkIwdl~~~~~v~  268 (315)
T KOG0279|consen  256 IKIWDLESKAVVE  268 (315)
T ss_pred             eEEEeccchhhhh
Confidence            9999998875554

>KOG0286|consensus

Probab=99.95  E-value=2.3e-26  Score=165.98  Aligned_cols=162  Identities=23%  Similarity=0.345  Sum_probs=147.2

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEEeCCC-
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      +..+..+++++.|-+ ..+|+|++.|.++.+||+++++..+.|..|...+.+++++| +++++++|+.|+..++||++. 
T Consensus       141 l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~  219 (343)
T KOG0286|consen  141 LAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG  219 (343)
T ss_pred             ecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc
Confidence            566788899999977 55678999999999999999999999999988899999999 999999999999999999985 


Q ss_pred             -------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC---CcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         85 -------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA---DQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                             +|.+.|+++.|.|+|.-+++|+.|+++++||++..+.+..+.+.   .+|++++||..|++|++|..|..+.+
T Consensus       220 ~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~v  299 (343)
T KOG0286|consen  220 QCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNV  299 (343)
T ss_pred             ceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeeecCCceeE
Confidence                   57888999999999999999999999999999998888888654   46899999999999999999999999


Q ss_pred             EeCCCCeeEEEcCCC
Q psy10953        155 YSYKPEEEVEVNGGG  169 (181)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (181)
                      ||.-.++++.++.|.
T Consensus       300 WDtlk~e~vg~L~GH  314 (343)
T KOG0286|consen  300 WDTLKGERVGVLAGH  314 (343)
T ss_pred             eeccccceEEEeecc
Confidence            999888888877763

>KOG0266|consensus

Probab=99.95  E-value=4.3e-26  Score=181.54  Aligned_cols=164  Identities=28%  Similarity=0.557  Sum_probs=142.9

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGV-ETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+..+...+++++|+|+|+++++++.|++|++||+ ..++....+..|...+.+++|+|+|+.+++|+.|++|++||++
T Consensus       197 ~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~  276 (456)
T KOG0266|consen  197 RELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVR  276 (456)
T ss_pred             ccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEecc
Confidence            344567778999999999999999999999999999 5668888888898899999999999999999999999999998


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeee-cCC--cEEEEEEccCCCEEEEEcCCC
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--MHTFK-HAD--QVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~-~~~--~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      +        +|...|..++|++++++|++++.|+.|++||+.++..  ...+. +..  .++++.|+|++++++++..|+
T Consensus       277 ~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~  356 (456)
T KOG0266|consen  277 TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDR  356 (456)
T ss_pred             CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCC
Confidence            5        4778899999999999999999999999999999883  34443 222  589999999999999999999


Q ss_pred             cEEEEeCCCCeeEEEcCC
Q psy10953        151 AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~~  168 (181)
                      .+++|++..+..+....+
T Consensus       357 ~~~~w~l~~~~~~~~~~~  374 (456)
T KOG0266|consen  357 TLKLWDLRSGKSVGTYTG  374 (456)
T ss_pred             eEEEEEccCCcceeeecc
Confidence            999999987765544444

>KOG0271|consensus

Probab=99.95  E-value=3.2e-26  Score=170.47  Aligned_cols=159  Identities=26%  Similarity=0.451  Sum_probs=135.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-EEEecCCceEEEEEECC-----CCCEEEEeeCCCc
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYST-----DGHWIASGALDGI   76 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~s~-----d~~~l~~~~~d~~   76 (181)
                      ++..+..+..=|.+++|||||+.||+|+.||+|++||-++|+.+ ..+..|...+.+++|.|     .+++|++++.||.
T Consensus       149 p~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~  228 (480)
T KOG0271|consen  149 PLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGS  228 (480)
T ss_pred             cceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCC
Confidence            34445556667899999999999999999999999999888766 56777888888888865     5677888888888


Q ss_pred             EEEEeCCC------------------------------------------------------------------------
Q psy10953         77 INIFDANT------------------------------------------------------------------------   84 (181)
Q Consensus        77 v~i~d~~~------------------------------------------------------------------------   84 (181)
                      ++|||+..                                                                        
T Consensus       229 vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~  308 (480)
T KOG0271|consen  229 VRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFD  308 (480)
T ss_pred             EEEEEccCceEEEEeccCccceEEEEEcCCceEEecCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccc
Confidence            88887420                                                                        


Q ss_pred             --------------------------------------------------------CCcccEEEEEEcCCCCEEEEEeCC
Q psy10953         85 --------------------------------------------------------GHSSWVLSTAFTRDGKFFISASAD  108 (181)
Q Consensus        85 --------------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d  108 (181)
                                                                              +|..-|+.+.||||++++++++.|
T Consensus       309 ~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFD  388 (480)
T KOG0271|consen  309 HTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFD  388 (480)
T ss_pred             cccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecc
Confidence                                                                    122347789999999999999999


Q ss_pred             CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        109 HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      ..|++||.++++-+.++. |-..|+-+++|.|.+.+++||.|.++++|++++..
T Consensus       389 kSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkK  442 (480)
T KOG0271|consen  389 KSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKK  442 (480)
T ss_pred             cceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeee
Confidence            999999999999999997 88999999999999999999999999999997643

>KOG0266|consensus

Probab=99.94  E-value=2.2e-25  Score=177.51  Aligned_cols=152  Identities=30%  Similarity=0.526  Sum_probs=139.0

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC-----
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN-----   83 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~-----   83 (181)
                      ...+.++.|+|+|+.+++++.|+.+++|+..+.+  ....+..|...+.+++|+||++++++++.|+++++||+.     
T Consensus       159 ~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~~~~  238 (456)
T KOG0266|consen  159 CPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDDGRN  238 (456)
T ss_pred             cCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCCCeE
Confidence            4557889999999999999999999999997777  666666677788899999999999999999999999993     


Q ss_pred             ----CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         84 ----TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        84 ----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                          .+|...|++++|+|+|+++++|+.|++|++||++++++...+. |.+.|.+++|++++++|++++.|+.|++||..
T Consensus       239 ~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~  318 (456)
T KOG0266|consen  239 LKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLE  318 (456)
T ss_pred             EEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECC
Confidence                3688999999999999999999999999999999998888886 88899999999999999999999999999999


Q ss_pred             CCee
Q psy10953        159 PEEE  162 (181)
Q Consensus       159 ~~~~  162 (181)
                      ++..
T Consensus       319 ~~~~  322 (456)
T KOG0266|consen  319 TGSK  322 (456)
T ss_pred             CCce
Confidence            8884

>KOG0284|consensus

Probab=99.94  E-value=5.1e-27  Score=175.64  Aligned_cols=160  Identities=24%  Similarity=0.424  Sum_probs=144.6

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG------   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~------   85 (181)
                      ..+++++|||+...++++++|++|++||....+....+..|+..+.++.|+|....+++++.|+.|++||.+++      
T Consensus       181 eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tl  260 (464)
T KOG0284|consen  181 EAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATL  260 (464)
T ss_pred             hhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhh
Confidence            66899999999999999999999999999988888888999999999999999999999999999999999864      


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCe
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                        |+..|..+.|+|++++|++++.|..+++||+++-+.+..++ |.+.++++.++|- ...|.+|+.|+.|..|.+...+
T Consensus       261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~  340 (464)
T KOG0284|consen  261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE  340 (464)
T ss_pred             hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCCCceEEEeccccc
Confidence              77889999999999999999999999999999777777776 8899999999995 5577888999999999998777


Q ss_pred             eEEEcCCCCc
Q psy10953        162 EVEVNGGGGE  171 (181)
Q Consensus       162 ~~~~~~~~~~  171 (181)
                      ++....++++
T Consensus       341 p~~~i~~AHd  350 (464)
T KOG0284|consen  341 PLGEIPPAHD  350 (464)
T ss_pred             cccCCCcccc
Confidence            7766666544

>KOG0291|consensus

Probab=99.94  E-value=1e-24  Score=173.77  Aligned_cols=164  Identities=23%  Similarity=0.428  Sum_probs=146.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +.+.|.+-..+.+++.||||+++|+|+.|++|++||...+-+...|..|...+..+.|+..|+.+++.+-||+|+.||+.
T Consensus       343 VlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlk  422 (893)
T KOG0291|consen  343 VLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLK  422 (893)
T ss_pred             eeeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeec
Confidence            45678888889999999999999999999999999999999999998888888899999999999999999999999964


Q ss_pred             ----------------------------------------------------CCCcccEEEEEEcCCCCEEEEEeCCCcE
Q psy10953         84 ----------------------------------------------------TGHSSWVLSTAFTRDGKFFISASADHTV  111 (181)
Q Consensus        84 ----------------------------------------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i  111 (181)
                                                                          .||.++|.++.|+|.+..|++++-|.+|
T Consensus       423 RYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SWDkTV  502 (893)
T KOG0291|consen  423 RYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSWDKTV  502 (893)
T ss_pred             ccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccccceE
Confidence                                                                1578889999999999999999999999


Q ss_pred             EEEecCCC-ceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        112 RVWNFARR-ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       112 ~v~d~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      ++||+... ....++.+...+..++|+|+|+.++++..||.|.+||.+.+.++...+
T Consensus       503 RiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id  559 (893)
T KOG0291|consen  503 RIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID  559 (893)
T ss_pred             EEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence            99998764 345566777889999999999999999999999999998776664333

>KOG0273|consensus

Probab=99.93  E-value=1.1e-24  Score=165.71  Aligned_cols=160  Identities=27%  Similarity=0.501  Sum_probs=136.0

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      ...++.+++|+.+|..||+|+.||.+++|+.. |.++..+..|..++.++.|+.+|.+|++++-|+++.+||..+     
T Consensus       234 ~nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~-G~l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~~~q  312 (524)
T KOG0273|consen  234 SNKDVTSLDWNNDGTLLATGSEDGEARIWNKD-GNLISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGTVKQ  312 (524)
T ss_pred             ccCCcceEEecCCCCeEEEeecCcEEEEEecC-chhhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCceEEE
Confidence            34678999999999999999999999999876 555556666777788999999999999999999999999631     


Q ss_pred             --------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC---
Q psy10953         85 --------------------------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFA---  117 (181)
Q Consensus        85 --------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~---  117 (181)
                                                                  +|.+.|.++.|+|.|.+|++++.|+++++|+..   
T Consensus       313 ~f~~~s~~~lDVdW~~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~  392 (524)
T KOG0273|consen  313 QFEFHSAPALDVDWQSNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSN  392 (524)
T ss_pred             eeeeccCCccceEEecCceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCc
Confidence                                                        367789999999999999999999999999731   


Q ss_pred             ------------------------------------------------CCceeeee-ecCCcEEEEEEccCCCEEEEEcC
Q psy10953        118 ------------------------------------------------RRENMHTF-KHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus       118 ------------------------------------------------~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                                                                      .+.+++.+ +|..+|++++|||+|+++++|+.
T Consensus       393 ~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~  472 (524)
T KOG0273|consen  393 SVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSL  472 (524)
T ss_pred             chhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCC
Confidence                                                            23455555 58889999999999999999999


Q ss_pred             CCcEEEEeCCCCeeEEEcCCCC
Q psy10953        149 DKAVHMYSYKPEEEVEVNGGGG  170 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~~~~~~~  170 (181)
                      |+.|++|+.+++..+.-..++.
T Consensus       473 dg~V~iws~~~~~l~~s~~~~~  494 (524)
T KOG0273|consen  473 DGCVHIWSTKTGKLVKSYQGTG  494 (524)
T ss_pred             CCeeEeccccchheeEeecCCC
Confidence            9999999999988877666543

>KOG0285|consensus

Probab=99.93  E-value=3e-24  Score=158.95  Aligned_cols=157  Identities=20%  Similarity=0.356  Sum_probs=143.9

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      +..+..=|.++++.|.++++++|+.|+++++||+.++++...+..|-..+..+++|+...++++++.|+.|+-||++.  
T Consensus       147 i~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk  226 (460)
T KOG0285|consen  147 ISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK  226 (460)
T ss_pred             hhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh
Confidence            344666689999999999999999999999999999999998888877888999999999999999999999999963  


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                            ||.+.|.++++.|.-+.|++++.|..+++||+++...+..+. |...|..+.+.|..-.+++||.|.+|++||+
T Consensus       227 vIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl  306 (460)
T KOG0285|consen  227 VIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDL  306 (460)
T ss_pred             hHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeee
Confidence                  688899999999999999999999999999999999888886 9999999999998889999999999999999


Q ss_pred             CCCeeE
Q psy10953        158 KPEEEV  163 (181)
Q Consensus       158 ~~~~~~  163 (181)
                      ..+...
T Consensus       307 ~agkt~  312 (460)
T KOG0285|consen  307 RAGKTM  312 (460)
T ss_pred             ccCcee
Confidence            776543

>KOG0319|consensus

Probab=99.93  E-value=3.2e-25  Score=175.96  Aligned_cols=157  Identities=30%  Similarity=0.505  Sum_probs=146.3

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---   84 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---   84 (181)
                      ..+.+++.+++++|+.+++|||++|++.++|+++..++...+..|...+.++.|+|..+.+++++.|++|++|.+.+   
T Consensus       460 ~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC  539 (775)
T KOG0319|consen  460 RAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC  539 (775)
T ss_pred             HhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEecccee
Confidence            44778899999999999999999999999999999999999999998899999999999999999999999999863   


Q ss_pred             -----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 -----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 -----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                           ||...|..+.|-.+|+.|++++.||-+++|++++..+..++. |.++||.++.+|...++++|+.|+.|.+|.=.
T Consensus       540 lkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD~  619 (775)
T KOG0319|consen  540 LKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKDV  619 (775)
T ss_pred             eeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeecC
Confidence                 688999999999999999999999999999999999999986 99999999999999999999999999999877


Q ss_pred             CCeeEE
Q psy10953        159 PEEEVE  164 (181)
Q Consensus       159 ~~~~~~  164 (181)
                      +.++.+
T Consensus       620 Te~~~~  625 (775)
T KOG0319|consen  620 TEEEQN  625 (775)
T ss_pred             cHHHHH
Confidence            655543

>KOG0275|consensus

Probab=99.93  E-value=8.2e-26  Score=165.80  Aligned_cols=152  Identities=32%  Similarity=0.500  Sum_probs=135.5

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe--------cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD--------TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~--------~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      .+-+..|||||++|++|+.||.|.+|+..+|++..-+.        .....+.|++||.|..++++|+.||.+++|.+.+
T Consensus       215 h~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~t  294 (508)
T KOG0275|consen  215 HVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIET  294 (508)
T ss_pred             chhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccHHHhhccCcCCcEEEEEEec
Confidence            34678899999999999999999999999998754322        2356678999999999999999999999999876


Q ss_pred             C---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         85 G---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        85 ~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      +         |...|+++.||.|+..+++++.|.++++--+++++.+..+. |...|+.+.|++||..+++++.|++|++
T Consensus       295 G~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkv  374 (508)
T KOG0275|consen  295 GQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKV  374 (508)
T ss_pred             chHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEE
Confidence            4         77889999999999999999999999999999999999987 8888999999999999999999999999


Q ss_pred             EeCCCCeeEE
Q psy10953        155 YSYKPEEEVE  164 (181)
Q Consensus       155 ~~~~~~~~~~  164 (181)
                      |+.++.+-+.
T Consensus       375 W~~KtteC~~  384 (508)
T KOG0275|consen  375 WHGKTTECLS  384 (508)
T ss_pred             ecCcchhhhh
Confidence            9998765443

>KOG0645|consensus

Probab=99.93  E-value=1.4e-23  Score=150.27  Aligned_cols=158  Identities=20%  Similarity=0.426  Sum_probs=135.3

Q ss_pred             cceeeeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCC---cEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCc
Q psy10953          2 KQISKINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETG---KLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~---~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      ..+++++.++..+|.++|+|. |..||+++.|+.|++|++..+   .+...+. .|...+++++|+|.|++|++++.|.+
T Consensus         5 ~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g~~La~aSFD~t   84 (312)
T KOG0645|consen    5 ILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHGRYLASASFDAT   84 (312)
T ss_pred             eeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCCcEEEEeeccce
Confidence            356777888888999999998 999999999999999998842   3333332 36677889999999999999999999


Q ss_pred             EEEEeCC----------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee---eee-ecCCcEEEEEEccCCCE
Q psy10953         77 INIFDAN----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM---HTF-KHADQVWCVCVAPDGDK  142 (181)
Q Consensus        77 v~i~d~~----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~-~~~~~v~~~~~sp~g~~  142 (181)
                      +.+|.-.          .||.+.|-+++|+++|++||+++.|+.|-||.......+   ..+ .|...|-.+.|+|....
T Consensus        85 ~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt~dl  164 (312)
T KOG0645|consen   85 VVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPTEDL  164 (312)
T ss_pred             EEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCCcce
Confidence            9999754          378889999999999999999999999999998855433   333 38888999999999999


Q ss_pred             EEEEcCCCcEEEEeCCC
Q psy10953        143 FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~  159 (181)
                      |+++|.|++|++|+-..
T Consensus       165 L~S~SYDnTIk~~~~~~  181 (312)
T KOG0645|consen  165 LFSCSYDNTIKVYRDED  181 (312)
T ss_pred             eEEeccCCeEEEEeecC
Confidence            99999999999999873

>PTZ00421 coronin; Provisional

Probab=99.93  E-value=2.4e-23  Score=166.32  Aligned_cols=154  Identities=17%  Similarity=0.281  Sum_probs=128.5

Q ss_pred             eccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCc-------EEEEEecCCceEEEEEECCCC-CEEEEeeCCCcE
Q psy10953          7 INVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGK-------LEQIFDTRGKFTLSIAYSTDG-HWIASGALDGII   77 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~-------~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v   77 (181)
                      +..+...|.+++|+| ++++|++|+.|++|++||+.++.       .+..+..|...+.+++|+|++ .+|++++.|+.|
T Consensus        71 l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtV  150 (493)
T PTZ00421         71 LLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVV  150 (493)
T ss_pred             EeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEE
Confidence            455677799999999 88999999999999999997653       345566677778899999986 689999999999


Q ss_pred             EEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCc-EEEEEEccCCCEEEEEc
Q psy10953         78 NIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ-VWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        78 ~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~-v~~~~~sp~g~~l~~~~  147 (181)
                      ++||+.+        +|...|.+++|+|+|++|++++.|+.|++||+++++.+..+. |.+. ...+.|.+++..+++++
T Consensus       151 rIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G  230 (493)
T PTZ00421        151 NVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLG  230 (493)
T ss_pred             EEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEe
Confidence            9999975        366789999999999999999999999999999988777665 5443 44677889888887654


Q ss_pred             ----CCCcEEEEeCCCC
Q psy10953        148 ----EDKAVHMYSYKPE  160 (181)
Q Consensus       148 ----~d~~v~i~~~~~~  160 (181)
                          .|+.|++||+...
T Consensus       231 ~s~s~Dr~VklWDlr~~  247 (493)
T PTZ00421        231 CSKSQQRQIMLWDTRKM  247 (493)
T ss_pred             cCCCCCCeEEEEeCCCC
Confidence                4789999999754

>PTZ00420 coronin; Provisional

Probab=99.92  E-value=5.9e-23  Score=165.44  Aligned_cols=156  Identities=17%  Similarity=0.322  Sum_probs=127.5

Q ss_pred             eeeeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc--------EEEEEecCCceEEEEEECCCCCE-EEEeeC
Q psy10953          4 ISKINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGK--------LEQIFDTRGKFTLSIAYSTDGHW-IASGAL   73 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~--------~~~~~~~~~~~~~~~~~s~d~~~-l~~~~~   73 (181)
                      +..+..+...|.+++|+|+ +++|++|+.|++|++||+.++.        ....+..|...+.+++|+|++.. |++++.
T Consensus        67 v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~  146 (568)
T PTZ00420         67 VIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSSGF  146 (568)
T ss_pred             EEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEEeC
Confidence            4556778888999999997 7899999999999999997642        12345567777889999999876 468899


Q ss_pred             CCcEEEEeCCCC-------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCc-----EEEEEEccCC
Q psy10953         74 DGIINIFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQ-----VWCVCVAPDG  140 (181)
Q Consensus        74 d~~v~i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~-----v~~~~~sp~g  140 (181)
                      |+.+++||++++       +...|.+++|+|+|++|++++.|+.|++||+++++.+.++. |.+.     ++...|++++
T Consensus       147 DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~  226 (568)
T PTZ00420        147 DSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDD  226 (568)
T ss_pred             CCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCC
Confidence            999999999764       34568899999999999999999999999999998877765 5543     3444567899


Q ss_pred             CEEEEEcCCC----cEEEEeCCC
Q psy10953        141 DKFVSVGEDK----AVHMYSYKP  159 (181)
Q Consensus       141 ~~l~~~~~d~----~v~i~~~~~  159 (181)
                      +++++++.++    .|++||+..
T Consensus       227 ~~IlTtG~d~~~~R~VkLWDlr~  249 (568)
T PTZ00420        227 NYILSTGFSKNNMREMKLWDLKN  249 (568)
T ss_pred             CEEEEEEcCCCCccEEEEEECCC
Confidence            9999988664    799999984

>KOG0295|consensus

Probab=99.92  E-value=1.3e-23  Score=155.52  Aligned_cols=165  Identities=22%  Similarity=0.334  Sum_probs=146.0

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +|..+..++..++++.|-|.|.++++++.|.+|+.|++.++-.+..+..+..++..+....||..+++++.|.++++|-.
T Consensus       185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~  264 (406)
T KOG0295|consen  185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV  264 (406)
T ss_pred             HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence            45566777888999999999999999999999999999999999999999999989999999999999999999999987


Q ss_pred             CCC--------CcccEEEEEEcCC---------------CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc
Q psy10953         83 NTG--------HSSWVLSTAFTRD---------------GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP  138 (181)
Q Consensus        83 ~~~--------~~~~v~~~~~s~~---------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp  138 (181)
                      .++        |.-.|.+++|-|.               ++++++++.|++|++||+.++.++.++. |...|.+++|+|
T Consensus       265 ~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p  344 (406)
T KOG0295|consen  265 ATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSP  344 (406)
T ss_pred             ccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcC
Confidence            653        5566777776653               3689999999999999999999888876 888999999999


Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        139 DGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      .|++|++++.|+++++|+++..+-.....
T Consensus       345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~  373 (406)
T KOG0295|consen  345 GGKYILSCADDKTLRVWDLKNLQCMKTLE  373 (406)
T ss_pred             CCeEEEEEecCCcEEEEEeccceeeeccC
Confidence            99999999999999999998876655444

>KOG0645|consensus

Probab=99.92  E-value=2.6e-23  Score=148.90  Aligned_cols=148  Identities=21%  Similarity=0.405  Sum_probs=130.1

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL--EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN----   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~----   83 (181)
                      +...++.++|+|.|++|++|++|.++.+|.-..+.+  ...+..|...+.+++|+++|++||+.+.|+.|-+|.+.    
T Consensus        60 hkrsVRsvAwsp~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddE  139 (312)
T KOG0645|consen   60 HKRSVRSVAWSPHGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDE  139 (312)
T ss_pred             chheeeeeeecCCCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCc
Confidence            556689999999999999999999999998776654  46677787889999999999999999999999999875    


Q ss_pred             -------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC---Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         84 -------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR---RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        84 -------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                             .+|...|-.+.|+|...+|++++.|.+|++|.-..   ..++.++. |...||+++|+|.|.++++++.|+++
T Consensus       140 fec~aVL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv  219 (312)
T KOG0645|consen  140 FECIAVLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTV  219 (312)
T ss_pred             EEEEeeeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcce
Confidence                   35777788899999999999999999999998762   24566665 77789999999999999999999999


Q ss_pred             EEEeC
Q psy10953        153 HMYSY  157 (181)
Q Consensus       153 ~i~~~  157 (181)
                      +||..
T Consensus       220 ~Iw~~  224 (312)
T KOG0645|consen  220 SIWRL  224 (312)
T ss_pred             Eeeee
Confidence            99994

>KOG0265|consensus

Probab=99.92  E-value=2.8e-23  Score=150.53  Aligned_cols=170  Identities=23%  Similarity=0.363  Sum_probs=145.2

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      .+|..+..++..++.+.|+|+|..+++|+.|..|.+|++. .-+....+..|...++.+.|.+|+..+++++.|++++.|
T Consensus        38 ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~w  117 (338)
T KOG0265|consen   38 APIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDGSHILSCGTDKTVRGW  117 (338)
T ss_pred             chhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCCCEEEEecCCceEEEE
Confidence            4667778899999999999999999999999999999964 334445566788889999999999999999999999999


Q ss_pred             eCCCC--------CcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         81 DANTG--------HSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        81 d~~~~--------~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      |.+++        |...|+.+.-+..|. ++.+++.|+++++||++....+.++....++.++.|..++..+.+|+.|+.
T Consensus       118 D~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~  197 (338)
T KOG0265|consen  118 DAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDND  197 (338)
T ss_pred             ecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccCc
Confidence            99864        556677776444554 666788899999999999999988887788999999999999999999999


Q ss_pred             EEEEeCCCCeeEEEcCCCCc
Q psy10953        152 VHMYSYKPEEEVEVNGGGGE  171 (181)
Q Consensus       152 v~i~~~~~~~~~~~~~~~~~  171 (181)
                      |++||+....-..+.+|+.+
T Consensus       198 ikvWd~r~~d~~~~lsGh~D  217 (338)
T KOG0265|consen  198 IKVWDLRKNDGLYTLSGHAD  217 (338)
T ss_pred             eeeeccccCcceEEeecccC
Confidence            99999987777777777543

>KOG0284|consensus

Probab=99.92  E-value=6.9e-25  Score=164.32  Aligned_cols=161  Identities=19%  Similarity=0.335  Sum_probs=139.4

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      +|.+...|+.+.|+++|.++++|+.+|.|+.|+..-........++...+.+++|||....|++++.||+++|||...  
T Consensus       134 lQaHDs~Vr~m~ws~~g~wmiSgD~gG~iKyWqpnmnnVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~k  213 (464)
T KOG0284|consen  134 LQAHDSPVRTMKWSHNGTWMISGDKGGMIKYWQPNMNNVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPK  213 (464)
T ss_pred             hhhhcccceeEEEccCCCEEEEcCCCceEEecccchhhhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCc
Confidence            455666789999999999999999999999998775555444445557889999999999999999999999999753  


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                            +|.-.|.+++|+|.--++++++.|..|++||.+++.++.++. |...|..+.|+|++++|+++|.|..++++|+
T Consensus       214 ee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~Di  293 (464)
T KOG0284|consen  214 EERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDI  293 (464)
T ss_pred             hhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEeh
Confidence                  555678999999999999999999999999999999999886 7788999999999999999999999999999


Q ss_pred             CCCeeEEEcC
Q psy10953        158 KPEEEVEVNG  167 (181)
Q Consensus       158 ~~~~~~~~~~  167 (181)
                      ++..++....
T Consensus       294 R~mkEl~~~r  303 (464)
T KOG0284|consen  294 RTMKELFTYR  303 (464)
T ss_pred             hHhHHHHHhh
Confidence            8655444333

>KOG0306|consensus

Probab=99.92  E-value=2.2e-23  Score=166.15  Aligned_cols=151  Identities=25%  Similarity=0.434  Sum_probs=135.9

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC------
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT------   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~------   84 (181)
                      +.++.++++||||++|+++--|.++++|-+++-++...+=.|.-++.|+.+|||++.+++|+.|+.|++|-+.-      
T Consensus       508 ~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS  587 (888)
T KOG0306|consen  508 EDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKS  587 (888)
T ss_pred             cccEEEEEEcCCCcEEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhh
Confidence            34589999999999999999999999999998888766666777888999999999999999999999998863      


Q ss_pred             --CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953         85 --GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        85 --~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                        +|...|.++.|.|....+++++.|+.++-||-.....+..+. |...||+++.+|+|.+++++|.|..|++|....+.
T Consensus       588 ~fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~  667 (888)
T KOG0306|consen  588 FFAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEI  667 (888)
T ss_pred             hhcccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcc
Confidence              367789999999999999999999999999988887777775 88999999999999999999999999999985443

>KOG0278|consensus

Probab=99.92  E-value=4.3e-23  Score=146.61  Aligned_cols=168  Identities=22%  Similarity=0.376  Sum_probs=138.3

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-   85 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-   85 (181)
                      +..++..+..+-|....+.++++.+|++||+||.++++..+.+..... +.++.+++||++| +-+..+.|..||+.+- 
T Consensus       139 ~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~-VtSlEvs~dG~il-Tia~gssV~Fwdaksf~  216 (334)
T KOG0278|consen  139 ISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSP-VTSLEVSQDGRIL-TIAYGSSVKFWDAKSFG  216 (334)
T ss_pred             hcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCC-CcceeeccCCCEE-EEecCceeEEecccccc
Confidence            445667788899998888898989999999999999999998876555 5689999999955 4555678999998753 


Q ss_pred             ------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 ------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 ------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                            ....|.+..++|+...+++|+.|..++.||+.++..+..+  .|.++|.|+.|+|+|...++||+||+|++|..
T Consensus       217 ~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt  296 (334)
T KOG0278|consen  217 LLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQT  296 (334)
T ss_pred             ceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEe
Confidence                  2345788899999999999999999999999999888775  48899999999999999999999999999999


Q ss_pred             CCCeeEEEcCCCCcchhhh
Q psy10953        158 KPEEEVEVNGGGGEEEEEE  176 (181)
Q Consensus       158 ~~~~~~~~~~~~~~~~~~~  176 (181)
                      .+++.-.+..-.+.+++-|
T Consensus       297 ~~~~~~~~~~~~~~ed~~e  315 (334)
T KOG0278|consen  297 TPGKTYGLWKCVKPEDDGE  315 (334)
T ss_pred             cCCCchhhccccChhhhcc
Confidence            8776554433334444433

>KOG0296|consensus

Probab=99.91  E-value=1.1e-22  Score=150.68  Aligned_cols=165  Identities=17%  Similarity=0.367  Sum_probs=148.1

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..++.+...+++++.+|+.++++||+.|....+|++.++.....+..|+..+.++.|+.||.+|++|+-+|.|.+|+.
T Consensus        56 S~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~  135 (399)
T KOG0296|consen   56 SLVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKV  135 (399)
T ss_pred             ceeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCceEEEecCCCccEEEEEc
Confidence            46778889999999999999999999999999999999999988888889998999999999999999999999999999


Q ss_pred             CCCCcccE--------EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         83 NTGHSSWV--------LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        83 ~~~~~~~v--------~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .+++..+.        .=+.|+|.+..|+.|+.||.+-+|.+..+.....+. |..++++-.|.|+|++++++..|+.|+
T Consensus       136 stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~  215 (399)
T KOG0296|consen  136 STGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTII  215 (399)
T ss_pred             ccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEE
Confidence            88765443        347899999999999999999999998865455554 888899999999999999999999999


Q ss_pred             EEeCCCCeeEEEcC
Q psy10953        154 MYSYKPEEEVEVNG  167 (181)
Q Consensus       154 i~~~~~~~~~~~~~  167 (181)
                      +|+.++++++....
T Consensus       216 ~Wn~ktg~p~~~~~  229 (399)
T KOG0296|consen  216 VWNPKTGQPLHKIT  229 (399)
T ss_pred             EEecCCCceeEEec
Confidence            99999998876555

>KOG0291|consensus

Probab=99.91  E-value=9.4e-23  Score=162.65  Aligned_cols=172  Identities=24%  Similarity=0.464  Sum_probs=152.5

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCC-CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQS-GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .|..+..+...+..++|+..|.+||.|+.. |.+.+|+-++...+...+.|-..+.++++||||+++++|+.||+|++||
T Consensus       299 lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn  378 (893)
T KOG0291|consen  299 LIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWN  378 (893)
T ss_pred             EEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEEEEe
Confidence            355666777788899999999999988765 7899999999888888888888888999999999999999999999999


Q ss_pred             CCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCc--EEEEEEccCCCEEEEEcCCC-
Q psy10953         82 ANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ--VWCVCVAPDGDKFVSVGEDK-  150 (181)
Q Consensus        82 ~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--v~~~~~sp~g~~l~~~~~d~-  150 (181)
                      ...        .|++.|+.++|+..|+.+++++-||+|+.||+.+.....++..+.+  ..|++..|.|..+++|+.|. 
T Consensus       379 ~~SgfC~vTFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F  458 (893)
T KOG0291|consen  379 TQSGFCFVTFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSF  458 (893)
T ss_pred             ccCceEEEEeccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceE
Confidence            975        4889999999999999999999999999999999998888875544  66899999999999999987 


Q ss_pred             cEEEEeCCCCeeEEEcCCCCcchh
Q psy10953        151 AVHMYSYKPEEEVEVNGGGGEEEE  174 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~~~~~~~~  174 (181)
                      .|++|++++|+.+.+++|+.++..
T Consensus       459 ~IfvWS~qTGqllDiLsGHEgPVs  482 (893)
T KOG0291|consen  459 EIFVWSVQTGQLLDILSGHEGPVS  482 (893)
T ss_pred             EEEEEEeecCeeeehhcCCCCcce
Confidence            799999999999999999765543

>KOG0315|consensus

Probab=99.91  E-value=3.3e-23  Score=146.96  Aligned_cols=137  Identities=17%  Similarity=0.351  Sum_probs=124.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----------CcccEEE
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----------HSSWVLS   92 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----------~~~~v~~   92 (181)
                      .-+|++++.|.+||+|...+|.+...+++....+..+++.||++.|++++ ...|++||+++.          |..-|.+
T Consensus        10 ~viLvsA~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~-~qhvRlyD~~S~np~Pv~t~e~h~kNVta   88 (311)
T KOG0315|consen   10 PVILVSAGYDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAG-NQHVRLYDLNSNNPNPVATFEGHTKNVTA   88 (311)
T ss_pred             ceEEEeccCcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhcc-CCeeEEEEccCCCCCceeEEeccCCceEE
Confidence            34789999999999999999999999999888888999999999888776 458999999753          5566899


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      +.|..+|+++.+++.||+++|||++...+...+.+..+|++++++|+..-|+++..++.|++||+...
T Consensus        89 VgF~~dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~  156 (311)
T KOG0315|consen   89 VGFQCDGRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGEN  156 (311)
T ss_pred             EEEeecCeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCC
Confidence            99999999999999999999999999888888899999999999999999999999999999999654

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.91  E-value=1e-21  Score=144.77  Aligned_cols=163  Identities=31%  Similarity=0.526  Sum_probs=139.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..++..+.+++|+|+++++++++.|+.+++|++.+++....+..+...+..+.|+|+++.+++++.++.+++||+.
T Consensus         2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~   81 (289)
T cd00200           2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLE   81 (289)
T ss_pred             chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcC
Confidence            34556777889999999999999999999999999999888777776666666689999999999999999999999997


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      .+        |...+.++.|+|+++++++++.++.+++||+.+++....+. |...+.+++++|+++++++++.++.+++
T Consensus        82 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i  161 (289)
T cd00200          82 TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKL  161 (289)
T ss_pred             cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEE
Confidence            52        45578999999999999888889999999999877776665 7778999999999999998888999999


Q ss_pred             EeCCCCeeEEEc
Q psy10953        155 YSYKPEEEVEVN  166 (181)
Q Consensus       155 ~~~~~~~~~~~~  166 (181)
                      |++..++.+...
T Consensus       162 ~d~~~~~~~~~~  173 (289)
T cd00200         162 WDLRTGKCVATL  173 (289)
T ss_pred             EEccccccceeE
Confidence            999866554433

>KOG0273|consensus

Probab=99.91  E-value=1.7e-22  Score=153.90  Aligned_cols=156  Identities=19%  Similarity=0.386  Sum_probs=141.8

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC---------CEEEEeeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG---------HWIASGAL   73 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~---------~~l~~~~~   73 (181)
                      ++-+++.+-.+|..+.|.|.|++|+++++|+++++|..........+..|...++.+.|+|.|         ..+++++.
T Consensus       351 P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~  430 (524)
T KOG0273|consen  351 PVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASF  430 (524)
T ss_pred             cceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeec
Confidence            445667788889999999999999999999999999998888888888888888999999964         46899999


Q ss_pred             CCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEE
Q psy10953         74 DGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        74 d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      |++|++||+..        +|...|.+++|+|+|+++++|+.||.|.+|+.++++.++.+...+.|..++|+.+|.++..
T Consensus       431 dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~Ifel~Wn~~G~kl~~  510 (524)
T KOG0273|consen  431 DSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGGIFELCWNAAGDKLGA  510 (524)
T ss_pred             CCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCeEEEEEEcCCCCEEEE
Confidence            99999999874        5788999999999999999999999999999999999999998888999999999999999


Q ss_pred             EcCCCcEEEEeCC
Q psy10953        146 VGEDKAVHMYSYK  158 (181)
Q Consensus       146 ~~~d~~v~i~~~~  158 (181)
                      +..|+.+++-|+.
T Consensus       511 ~~sd~~vcvldlr  523 (524)
T KOG0273|consen  511 CASDGSVCVLDLR  523 (524)
T ss_pred             EecCCCceEEEec
Confidence            9999999998874

>KOG0276|consensus

Probab=99.91  E-value=5.9e-23  Score=161.09  Aligned_cols=159  Identities=23%  Similarity=0.441  Sum_probs=144.4

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEE
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINI   79 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i   79 (181)
                      .+...++.++.++++++.+|..-+++++++|-+|++||-+ ...+.+.|..|.+.+++++|.| |.+.+++++-|++|++
T Consensus        88 ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKV  167 (794)
T KOG0276|consen   88 EKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKV  167 (794)
T ss_pred             eeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEE
Confidence            4566788899999999999999999999999999999986 4467789999999999999999 5689999999999999


Q ss_pred             EeCCC--------CCcccEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         80 FDANT--------GHSSWVLSTAFTRDGK--FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        80 ~d~~~--------~~~~~v~~~~~s~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      |.+..        +|...|+++.|-+.|.  +|++|+.|..+++||..+..++.++. |...|..++|+|.=-.+++||+
T Consensus       168 Wslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsE  247 (794)
T KOG0276|consen  168 WSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSE  247 (794)
T ss_pred             EEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecC
Confidence            99853        6778899999999774  89999999999999999999998886 8899999999999999999999


Q ss_pred             CCcEEEEeCCCC
Q psy10953        149 DKAVHMYSYKPE  160 (181)
Q Consensus       149 d~~v~i~~~~~~  160 (181)
                      ||+++||+..+.
T Consensus       248 DGTvriWhs~Ty  259 (794)
T KOG0276|consen  248 DGTVRIWNSKTY  259 (794)
T ss_pred             CccEEEecCcce
Confidence            999999997653

>PTZ00421 coronin; Provisional

Probab=99.90  E-value=1.3e-21  Score=156.35  Aligned_cols=166  Identities=15%  Similarity=0.258  Sum_probs=132.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .+..+..+...+.+++|+|++ ++|++++.|++|++||+++++....+..+...+.+++|+|+|.+|++++.|+.+++||
T Consensus       117 ~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD  196 (493)
T PTZ00421        117 PIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIID  196 (493)
T ss_pred             ceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEE
Confidence            355667788889999999986 6899999999999999999998888877777788999999999999999999999999


Q ss_pred             CCCC--------Ccc-cEEEEEEcCCCCEEEEEe----CCCcEEEEecCCCc-eeeeee--cCCcEEEEEEccCCCEEEE
Q psy10953         82 ANTG--------HSS-WVLSTAFTRDGKFFISAS----ADHTVRVWNFARRE-NMHTFK--HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        82 ~~~~--------~~~-~v~~~~~s~~~~~l~~~~----~d~~i~v~d~~~~~-~~~~~~--~~~~v~~~~~sp~g~~l~~  145 (181)
                      ++++        |.. .+..+.|.+++..+++++    .|+.|++||++... .+....  ....+....|+++++++++
T Consensus       197 ~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~l  276 (493)
T PTZ00421        197 PRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYI  276 (493)
T ss_pred             CCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEE
Confidence            9864        322 234567888888777654    47899999998754 333332  2334666789999999998


Q ss_pred             Ec-CCCcEEEEeCCCCeeEEEcCC
Q psy10953        146 VG-EDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       146 ~~-~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      ++ .|+.|++|++..+..+.....
T Consensus       277 ggkgDg~Iriwdl~~~~~~~~~~~  300 (493)
T PTZ00421        277 GSKGEGNIRCFELMNERLTFCSSY  300 (493)
T ss_pred             EEeCCCeEEEEEeeCCceEEEeec
Confidence            87 599999999988776654433

>KOG0282|consensus

Probab=99.90  E-value=6.9e-24  Score=161.68  Aligned_cols=161  Identities=17%  Similarity=0.384  Sum_probs=145.9

Q ss_pred             ceeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVET-GKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      .+.....+...++++.|.| .+.+|++++.|+.|++|++.. +++++.|..|...+..++|+.+|..|++++.|+.+++|
T Consensus       206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlw  285 (503)
T KOG0282|consen  206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLW  285 (503)
T ss_pred             heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccCCeeeeeecceeeeee
Confidence            4667788999999999999 889999999999999999975 88999999999999999999999999999999999999


Q ss_pred             eCCCCC-------cccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         81 DANTGH-------SSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        81 d~~~~~-------~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      |+++|.       ...+.++.|.|++ +.+++|+.|+.|+-||+++++.+..+. |-+.|..+.|-++|+++++.+.|+.
T Consensus       286 DtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks  365 (503)
T KOG0282|consen  286 DTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKS  365 (503)
T ss_pred             ccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCcc
Confidence            999873       2356889999998 789999999999999999999888886 6788999999999999999999999


Q ss_pred             EEEEeCCCCeeE
Q psy10953        152 VHMYSYKPEEEV  163 (181)
Q Consensus       152 v~i~~~~~~~~~  163 (181)
                      +++|++....++
T Consensus       366 ~riWe~~~~v~i  377 (503)
T KOG0282|consen  366 VRIWENRIPVPI  377 (503)
T ss_pred             EEEEEcCCCccc
Confidence            999999766544

>KOG1446|consensus

Probab=99.90  E-value=1.5e-21  Score=142.24  Aligned_cols=163  Identities=17%  Similarity=0.259  Sum_probs=139.6

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      |+-+..+...|..++.+|-+..+++++.|++|++||++..+....+...+..  ..+|+|.|-.+|++.....|++||++
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p--i~AfDp~GLifA~~~~~~~IkLyD~R  170 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP--IAAFDPEGLIFALANGSELIKLYDLR  170 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc--ceeECCCCcEEEEecCCCeEEEEEec
Confidence            4556778889999999999999999999999999999988888777666654  47999999999999888899999997


Q ss_pred             CC-------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCC--c-EEEEEEccCCCEEEEE
Q psy10953         84 TG-------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HAD--Q-VWCVCVAPDGDKFVSV  146 (181)
Q Consensus        84 ~~-------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~--~-v~~~~~sp~g~~l~~~  146 (181)
                      .-             .......+.|||+|++++-++..+.+++.|..++....++. ++.  . ....+|+||++++++|
T Consensus       171 s~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds~Fvl~g  250 (311)
T KOG1446|consen  171 SFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDSKFVLSG  250 (311)
T ss_pred             ccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCCcEEEEe
Confidence            42             12346789999999999999999999999999998887775 222  1 2478999999999999


Q ss_pred             cCCCcEEEEeCCCCeeEEEcCC
Q psy10953        147 GEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +.||+|++|++.++.++....+
T Consensus       251 s~dg~i~vw~~~tg~~v~~~~~  272 (311)
T KOG1446|consen  251 SDDGTIHVWNLETGKKVAVLRG  272 (311)
T ss_pred             cCCCcEEEEEcCCCcEeeEecC
Confidence            9999999999999999887776

>KOG0640|consensus

Probab=99.90  E-value=4.7e-23  Score=150.38  Aligned_cols=170  Identities=18%  Similarity=0.386  Sum_probs=145.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ--IFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      |+.+..+..++.++.|+|...+|++|+.|++|++||.......+  ........+.+++|+|.|.+|+.|.....+++||
T Consensus       165 IRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYd  244 (430)
T KOG0640|consen  165 IRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYD  244 (430)
T ss_pred             EeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEe
Confidence            67778888889999999999999999999999999986332221  1112345678999999999999999999999999


Q ss_pred             CCC-----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cC-CcEEEEEEccCCCEEEEEc
Q psy10953         82 ANT-----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HA-DQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        82 ~~~-----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~-~~v~~~~~sp~g~~l~~~~  147 (181)
                      +++           +|+..|+++.+++.|++.++++.||.|++||--+.+++.++.  |. ..|.++.|+.+|+++.+.+
T Consensus       245 v~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG  324 (430)
T KOG0640|consen  245 VNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSG  324 (430)
T ss_pred             ccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecC
Confidence            864           578899999999999999999999999999988888888875  43 4688999999999999999


Q ss_pred             CCCcEEEEeCCCCeeEEEcCCCCcch
Q psy10953        148 EDKAVHMYSYKPEEEVEVNGGGGEEE  173 (181)
Q Consensus       148 ~d~~v~i~~~~~~~~~~~~~~~~~~~  173 (181)
                      .|..+++|.+.++..+...-|++...
T Consensus       325 ~DS~vkLWEi~t~R~l~~YtGAg~tg  350 (430)
T KOG0640|consen  325 KDSTVKLWEISTGRMLKEYTGAGTTG  350 (430)
T ss_pred             CcceeeeeeecCCceEEEEecCCccc
Confidence            99999999999999888777764433

>KOG0282|consensus

Probab=99.90  E-value=7.9e-23  Score=155.94  Aligned_cols=160  Identities=25%  Similarity=0.395  Sum_probs=133.9

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d   81 (181)
                      .++....+...|.+++|+++|..+++++.|+.+++||+++|+++..+.. +....++.|.||+ +.|++|+.|+.|..||
T Consensus       250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~~~~~f~~-~~~~~cvkf~pd~~n~fl~G~sd~ki~~wD  328 (503)
T KOG0282|consen  250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQVLSRFHL-DKVPTCVKFHPDNQNIFLVGGSDKKIRQWD  328 (503)
T ss_pred             eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccceEEEEEec-CCCceeeecCCCCCcEEEEecCCCcEEEEe
Confidence            5677788899999999999999999999999999999999999998864 4456799999998 7889999999999999


Q ss_pred             CCCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-----------------------------
Q psy10953         82 ANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-----------------------------  124 (181)
Q Consensus        82 ~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-----------------------------  124 (181)
                      ++++        |.+.|..+.|-++|+.+++.+.|+++++|+.+....+..                             
T Consensus       329 iRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~  408 (503)
T KOG0282|consen  329 IRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNY  408 (503)
T ss_pred             ccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCce
Confidence            9875        567899999999999999999999999998653211100                             


Q ss_pred             ---e--------------e-c--CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        125 ---F--------------K-H--ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       125 ---~--------------~-~--~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                         +              . |  .+.-..+.|||||++|++|..||.+.+|++++-..+
T Consensus       409 i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~  467 (503)
T KOG0282|consen  409 IAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLV  467 (503)
T ss_pred             EEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhh
Confidence               0              0 0  122345889999999999999999999999875544

>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto

Probab=99.90  E-value=6e-21  Score=140.70  Aligned_cols=164  Identities=30%  Similarity=0.512  Sum_probs=139.9

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.++.|+|+++++++++.|+.+++||+++++....+..+...+.++.|+|+++++++++.++.+++||++
T Consensus        86 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~  165 (289)
T cd00200          86 VRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLR  165 (289)
T ss_pred             eEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEcc
Confidence            44455566678999999999999888889999999999888887777666678899999999988888889999999986


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      .+        +...+.++.|+|+++.+++++.++.+++||+..++.+..+ .+...+.+++++|++.++++++.++.+++
T Consensus       166 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i  245 (289)
T cd00200         166 TGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRV  245 (289)
T ss_pred             ccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEE
Confidence            43        4457889999999999999999999999999988888777 57778999999999888888888999999


Q ss_pred             EeCCCCeeEEEcC
Q psy10953        155 YSYKPEEEVEVNG  167 (181)
Q Consensus       155 ~~~~~~~~~~~~~  167 (181)
                      |++..+..+....
T Consensus       246 ~~~~~~~~~~~~~  258 (289)
T cd00200         246 WDLRTGECVQTLS  258 (289)
T ss_pred             EEcCCceeEEEcc
Confidence            9998776665444

>KOG0283|consensus

Probab=99.90  E-value=1e-22  Score=163.64  Aligned_cols=153  Identities=25%  Similarity=0.446  Sum_probs=125.1

Q ss_pred             eec-cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--------------------------------C---------
Q psy10953          6 KIN-VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--------------------------------G---------   43 (181)
Q Consensus         6 ~~~-~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--------------------------------~---------   43 (181)
                      .++ .+...+|++.||+||+|||+||.|+.|+||.+..                                .         
T Consensus       261 e~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~~  340 (712)
T KOG0283|consen  261 EISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSSR  340 (712)
T ss_pred             ccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccccccc
Confidence            344 5667799999999999999999999999998755                                0         


Q ss_pred             -------------------cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-------CcccEEEEEEcC
Q psy10953         44 -------------------KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------HSSWVLSTAFTR   97 (181)
Q Consensus        44 -------------------~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-------~~~~v~~~~~s~   97 (181)
                                         +....|..|...+..++||.+ ++|++++-|++|++|++...       |..+|++++|+|
T Consensus       341 ~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaFnP  419 (712)
T KOG0283|consen  341 KGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAFNP  419 (712)
T ss_pred             cccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEecc
Confidence                               001112223345678899975 56888999999999999753       788999999999


Q ss_pred             -CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         98 -DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        98 -~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                       |.+++++|+-|+.|+||++...+...-....+-|+++||.|||+..+.|+-+|.+++|+...
T Consensus       420 vDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~  482 (712)
T KOG0283|consen  420 VDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEG  482 (712)
T ss_pred             cCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccC
Confidence             56899999999999999998876555445567899999999999999999999999999754

>KOG0295|consensus

Probab=99.90  E-value=4.8e-22  Score=147.29  Aligned_cols=154  Identities=24%  Similarity=0.389  Sum_probs=138.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC---------------CCE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD---------------GHW   67 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d---------------~~~   67 (181)
                      ++..+..++.-+..++.+.||.++++++.|.++++|-+.+++....+..|...+.+++|.|.               ++.
T Consensus       227 cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~  306 (406)
T KOG0295|consen  227 CVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQV  306 (406)
T ss_pred             eEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccE
Confidence            34566677777889999999999999999999999999999888888888888888888763               258


Q ss_pred             EEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc
Q psy10953         68 IASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP  138 (181)
Q Consensus        68 l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp  138 (181)
                      +++++.|+++++||+.+        +|.++|..++|+|.|++|+++..|+++++||+++++++.... |+.-++++.|+.
T Consensus       307 l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~  386 (406)
T KOG0295|consen  307 LGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHK  386 (406)
T ss_pred             EEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCC
Confidence            88999999999999975        588999999999999999999999999999999999998886 777899999999


Q ss_pred             CCCEEEEEcCCCcEEEEe
Q psy10953        139 DGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~  156 (181)
                      +--++++|+-|..+++|.
T Consensus       387 ~~p~VvTGsVdqt~KvwE  404 (406)
T KOG0295|consen  387 TAPYVVTGSVDQTVKVWE  404 (406)
T ss_pred             CCceEEeccccceeeeee
Confidence            999999999999999995

>KOG0292|consensus

Probab=99.89  E-value=1.6e-22  Score=163.81  Aligned_cols=165  Identities=24%  Similarity=0.431  Sum_probs=147.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +.++.....-+-.++|+|..-+++++-..|.|++||.+-+.++..|..|...+..+.|+|.+..|++|+.|-.|++|+..
T Consensus         2 ltkfEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~tli~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk   81 (1202)
T KOG0292|consen    2 LTKFESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYK   81 (1202)
T ss_pred             cchhhcccccccceecCCCCCEEEEeecCceeeeehhhhhhHHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecc
Confidence            34455555567889999999999999999999999999999999999999999999999999999999999999999975


Q ss_pred             --------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 --------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 --------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                              .+|..+|+.+.|++.--++++++.|.+|+|||..+++++.... |...|+|..|+|....++++|.|.+|++
T Consensus        82 ~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRV  161 (1202)
T KOG0292|consen   82 TRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRV  161 (1202)
T ss_pred             cceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEE
Confidence                    4799999999999999999999999999999999999998886 7778999999999999999999999999


Q ss_pred             EeCCCCeeEEEcCCC
Q psy10953        155 YSYKPEEEVEVNGGG  169 (181)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (181)
                      ||+. |.+..-..+|
T Consensus       162 WDis-GLRkk~~~pg  175 (1202)
T KOG0292|consen  162 WDIS-GLRKKNKAPG  175 (1202)
T ss_pred             Eeec-chhccCCCCC
Confidence            9994 3443333443

>KOG0265|consensus

Probab=99.89  E-value=1.3e-21  Score=141.97  Aligned_cols=170  Identities=20%  Similarity=0.312  Sum_probs=147.0

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCE-EEEeeCCCcEEEEeCCCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW-IASGALDGIINIFDANTG   85 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~~~~~d~~v~i~d~~~~   85 (181)
                      +..+..-|-.+.|.+|++.+++++.|++++.||+++|+....+..|..++..+.-+.-|.. +.+++.|+++++||.++.
T Consensus        86 lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k  165 (338)
T KOG0265|consen   86 LKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKK  165 (338)
T ss_pred             eccccceeEeeeeccCCCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeeccc
Confidence            4456667788999999999999999999999999999999999999988877775555654 556899999999999854


Q ss_pred             C-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 H-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 ~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      +       +..+.++.|..++..+.+|+-|+.|++||++......... |.+.|+++..+|+|.++.+-+-|+.+++|++
T Consensus       166 ~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~  245 (338)
T KOG0265|consen  166 EAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDV  245 (338)
T ss_pred             chhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEe
Confidence            2       3457899999999999999999999999999988887775 8999999999999999999999999999998


Q ss_pred             CCC---ee-EEEcCCCCcchhhh
Q psy10953        158 KPE---EE-VEVNGGGGEEEEEE  176 (181)
Q Consensus       158 ~~~---~~-~~~~~~~~~~~~~~  176 (181)
                      ++.   ++ +.+..++.-+.|.+
T Consensus       246 rp~~p~~R~v~if~g~~hnfekn  268 (338)
T KOG0265|consen  246 RPFAPSQRCVKIFQGHIHNFEKN  268 (338)
T ss_pred             cccCCCCceEEEeecchhhhhhh
Confidence            754   55 77888877777766

>KOG0318|consensus

Probab=99.89  E-value=3e-21  Score=148.86  Aligned_cols=160  Identities=23%  Similarity=0.417  Sum_probs=135.6

Q ss_pred             eccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953          7 INVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      +..+..-+.+++|-|..- ++++|++|.+|.+|+-..-++...+..|..++.++.|+|||..+++.+.||++.+||-.+ 
T Consensus       143 i~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iyDGktg  222 (603)
T KOG0318|consen  143 ITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIYDGKTG  222 (603)
T ss_pred             eeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEEcCCCc
Confidence            445666678888987654 689999999999999888899888888999999999999999999999999999999754 


Q ss_pred             ----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee-------------------------------
Q psy10953         85 ----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH-------------------------------  123 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~-------------------------------  123 (181)
                                +|.+.|.+++|+||++.+++++.|.++++||..+.+.+.                               
T Consensus       223 e~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~i  302 (603)
T KOG0318|consen  223 EKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTI  302 (603)
T ss_pred             cEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEE
Confidence                      478899999999999999999999999999975432111                               


Q ss_pred             ------------ee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        124 ------------TF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       124 ------------~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                                  .+ .|...|+++..+|++++|++|+.||.|.-|+...+..-++.
T Consensus       303 n~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~  358 (603)
T KOG0318|consen  303 NYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYSGSYDGHINSWDSGSGTSDRLA  358 (603)
T ss_pred             EEecccCCChhheecccccceeEEEEcCCCCEEEeeccCceEEEEecCCccccccc
Confidence                        11 24557899999999999999999999999999877655443

>PTZ00420 coronin; Provisional

Probab=99.89  E-value=4.7e-21  Score=154.52  Aligned_cols=138  Identities=14%  Similarity=0.203  Sum_probs=118.9

Q ss_pred             EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCCC----------------CCcccEE
Q psy10953         29 GSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDANT----------------GHSSWVL   91 (181)
Q Consensus        29 ~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~~----------------~~~~~v~   91 (181)
                      |+.++.+++|+.........+..|...+.+++|+|+ +.+|++|+.|+.|++||+..                +|...|.
T Consensus        50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~  129 (568)
T PTZ00420         50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKIS  129 (568)
T ss_pred             CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEE
Confidence            556788999988776667777778888899999997 78999999999999999853                3567799


Q ss_pred             EEEEcCCCCE-EEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953         92 STAFTRDGKF-FISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus        92 ~~~~s~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      +++|+|++.. +++++.|+.|++||+++++....+.+...|.+++|+|+|+.|++++.|+.|++||+.+++.+...
T Consensus       130 sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl  205 (568)
T PTZ00420        130 IIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF  205 (568)
T ss_pred             EEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence            9999999875 57899999999999999887777777788999999999999999999999999999988765433

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.89  E-value=7.4e-21  Score=160.84  Aligned_cols=157  Identities=22%  Similarity=0.409  Sum_probs=131.2

Q ss_pred             eeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEE-CCCCCEEEEeeCCCcEEEEe
Q psy10953          4 ISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY-STDGHWIASGALDGIINIFD   81 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~-s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +..+..+...+++++|+| ++.+|++|+.|++|++||+++++....+..+. .+.++.| +++|.+|++|+.|+.|++||
T Consensus       568 ~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~-~v~~v~~~~~~g~~latgs~dg~I~iwD  646 (793)
T PLN00181        568 VTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKA-NICCVQFPSESGRSLAFGSADHKVYYYD  646 (793)
T ss_pred             EEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCC-CeEEEEEeCCCCCEEEEEeCCCeEEEEE
Confidence            455666777899999996 78999999999999999999988877776543 4568888 45799999999999999999


Q ss_pred             CCC---------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC------ceeeeee-cCCcEEEEEEccCCCEEEE
Q psy10953         82 ANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR------ENMHTFK-HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        82 ~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~-~~~~v~~~~~sp~g~~l~~  145 (181)
                      ++.         +|...|..+.|. ++.++++++.|+.|++||+...      ..+..+. |...+.+++|+|++++|++
T Consensus       647 ~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~las  725 (793)
T PLN00181        647 LRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIAT  725 (793)
T ss_pred             CCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEE
Confidence            864         356678999997 6789999999999999998742      3455554 6778899999999999999


Q ss_pred             EcCCCcEEEEeCCCCee
Q psy10953        146 VGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~~~  162 (181)
                      |+.|+.|++|+.....+
T Consensus       726 gs~D~~v~iw~~~~~~~  742 (793)
T PLN00181        726 GSETNEVFVYHKAFPMP  742 (793)
T ss_pred             EeCCCEEEEEECCCCCc
Confidence            99999999999765433

>KOG0293|consensus

Probab=99.88  E-value=2.6e-21  Score=145.63  Aligned_cols=165  Identities=22%  Similarity=0.374  Sum_probs=128.0

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      -++..+...|..+.||||.++|++++.|..+++||+.+|.....+... +..+.+++|.|||..+++|+.|+.+..||+.
T Consensus       263 ~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlD  342 (519)
T KOG0293|consen  263 KTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLD  342 (519)
T ss_pred             eeeecccCceEEEEECCCCCeEEecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCC
Confidence            345667788999999999999999999999999999999988777643 4556789999999999999999999999996


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEE---------------------
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV---------------------  134 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~---------------------  134 (181)
                      ..        ....|.++++++||++++..+.|..|++|+..+......+....+|++.                     
T Consensus       343 gn~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LW  422 (519)
T KOG0293|consen  343 GNILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLW  422 (519)
T ss_pred             cchhhcccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEe
Confidence            43        2345889999999999999999999999987543322222222233333                     


Q ss_pred             -----------------------EEcc-CCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        135 -----------------------CVAP-DGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       135 -----------------------~~sp-~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                                             ||.- +..++++||+|+.|+||+...+.++.++.|.
T Consensus       423 Dl~e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGH  481 (519)
T KOG0293|consen  423 DLEENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGH  481 (519)
T ss_pred             ecchhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecCC
Confidence                                   3332 2357788888888888888888888777764

>KOG0285|consensus

Probab=99.88  E-value=1e-21  Score=145.66  Aligned_cols=160  Identities=20%  Similarity=0.329  Sum_probs=142.2

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..++.+-..|..+++|+-.-|+++++.|+.|+.||++.+++++.+-.|-..+++++.+|--..|++++.|..+++||.++
T Consensus       187 ltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRt  266 (460)
T KOG0285|consen  187 LTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRT  266 (460)
T ss_pred             EeecchhheeeeeeecccCceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecc
Confidence            34556777789999999999999999999999999999999988877777789999999999999999999999999974


Q ss_pred             --------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 --------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                              ||...|..+.+.|-.-.+++|+.|++|++||++.++.+.+.. |...+.+++++|....|++++.| .|+.|
T Consensus       267 r~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~d-nik~w  345 (460)
T KOG0285|consen  267 RASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPD-NIKQW  345 (460)
T ss_pred             cceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCc-cceec
Confidence                    789999999999977788999999999999999999888876 56679999999999999998876 68999


Q ss_pred             eCCCCeeEEE
Q psy10953        156 SYKPEEEVEV  165 (181)
Q Consensus       156 ~~~~~~~~~~  165 (181)
                      ++..|..+.-
T Consensus       346 ~~p~g~f~~n  355 (460)
T KOG0285|consen  346 KLPEGEFLQN  355 (460)
T ss_pred             cCCccchhhc
Confidence            9988766543

>KOG0293|consensus

Probab=99.88  E-value=1.8e-21  Score=146.55  Aligned_cols=157  Identities=21%  Similarity=0.376  Sum_probs=130.7

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK---LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .++.+..+||.+.||++|++||+++.|.+..+|++....   +...+..|...+..+.||||.++|++.+.+..+.+||+
T Consensus       219 il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv  298 (519)
T KOG0293|consen  219 ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV  298 (519)
T ss_pred             hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence            456677889999999999999999999999999875433   34555667777778999999999999999999999999


Q ss_pred             CCC---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         83 NTG---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        83 ~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      .++         +...+.+++|.|||..+++|+.|+.+..||+.... ...+.  ...+|+++++++||+++++...|..
T Consensus       299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~-~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~  377 (519)
T KOG0293|consen  299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNI-LGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK  377 (519)
T ss_pred             CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcch-hhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence            764         23568899999999999999999999999986543 33332  3356999999999999999999999


Q ss_pred             EEEEeCCCCeeE
Q psy10953        152 VHMYSYKPEEEV  163 (181)
Q Consensus       152 v~i~~~~~~~~~  163 (181)
                      |++|+..+....
T Consensus       378 i~l~~~e~~~dr  389 (519)
T KOG0293|consen  378 IRLYNREARVDR  389 (519)
T ss_pred             eeeechhhhhhh
Confidence            999998665443

>PLN00181 protein SPA1-RELATED; Provisional

Probab=99.88  E-value=2.1e-20  Score=158.07  Aligned_cols=152  Identities=18%  Similarity=0.330  Sum_probs=125.5

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cE----EEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEE
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG----KL----EQIFDTRGKFTLSIAYST-DGHWIASGALDGIINI   79 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~----~~----~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i   79 (181)
                      .+...+.+++|+|+|+++++|+.|++|++|++...    ..    ...+.. ...+.+++|++ ++.+|++++.|+.|++
T Consensus       481 ~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~-~~~v~~l~~~~~~~~~las~~~Dg~v~l  559 (793)
T PLN00181        481 NSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS-RSKLSGICWNSYIKSQVASSNFEGVVQV  559 (793)
T ss_pred             CCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEecc-cCceeeEEeccCCCCEEEEEeCCCeEEE
Confidence            35666899999999999999999999999997532    11    112222 23456789987 4788999999999999


Q ss_pred             EeCCC--------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEc-cCCCEEEEEcCC
Q psy10953         80 FDANT--------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVA-PDGDKFVSVGED  149 (181)
Q Consensus        80 ~d~~~--------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s-p~g~~l~~~~~d  149 (181)
                      ||+.+        +|...|.+++|+| ++.+|++++.|+.|++||++++..+..+.....+.++.|+ ++|..+++|+.|
T Consensus       560 Wd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~d  639 (793)
T PLN00181        560 WDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGSAD  639 (793)
T ss_pred             EECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCC
Confidence            99864        4778899999997 7899999999999999999988888777766789999995 579999999999


Q ss_pred             CcEEEEeCCCCe
Q psy10953        150 KAVHMYSYKPEE  161 (181)
Q Consensus       150 ~~v~i~~~~~~~  161 (181)
                      +.|++||+....
T Consensus       640 g~I~iwD~~~~~  651 (793)
T PLN00181        640 HKVYYYDLRNPK  651 (793)
T ss_pred             CeEEEEECCCCC
Confidence            999999997653

>KOG0310|consensus

Probab=99.88  E-value=1.6e-21  Score=148.91  Aligned_cols=153  Identities=18%  Similarity=0.360  Sum_probs=132.4

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANT----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~----   84 (181)
                      ....++++.|-.||+++++|...|.|++||+.+...+..+..|...+....|+|++ ..|++|+.|+.+++||+.+    
T Consensus        67 Fk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~  146 (487)
T KOG0310|consen   67 FKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQ  146 (487)
T ss_pred             hccceeEEEeecCCeEEEccCCcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEE
Confidence            34568899999999999999999999999988877777888888888889999976 5567788899999999864    


Q ss_pred             ----CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC-ceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 ----GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARR-ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                          +|+.+|.+.+|+|... .++||+.||+|++||++.. ..+.++.|..+|..+.+-|.|..|++++ .+.|++||+-
T Consensus       147 ~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~  225 (487)
T KOG0310|consen  147 AELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLT  225 (487)
T ss_pred             EEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEec
Confidence                6889999999999754 8899999999999999987 6777888999999999999999999888 4699999998


Q ss_pred             CCeeE
Q psy10953        159 PEEEV  163 (181)
Q Consensus       159 ~~~~~  163 (181)
                      +|.+.
T Consensus       226 ~G~ql  230 (487)
T KOG0310|consen  226 TGGQL  230 (487)
T ss_pred             CCcee
Confidence            66443

>KOG0316|consensus

Probab=99.88  E-value=8.9e-21  Score=133.85  Aligned_cols=170  Identities=21%  Similarity=0.348  Sum_probs=139.1

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..+...+..+..+.|.-||++.++++.|.+|++|+...+.+++.+..|+..+..++.+.|...|++++.|+.+.+||+
T Consensus         9 r~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV   88 (307)
T KOG0316|consen    9 RLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDV   88 (307)
T ss_pred             hceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEc
Confidence            34445556677899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC--ceeeeee--------------------------
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR--ENMHTFK--------------------------  126 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~--------------------------  126 (181)
                      .+        +|...|+.++|+.+...+++++.|.++++||.++.  +++..+.                          
T Consensus        89 ~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvR  168 (307)
T KOG0316|consen   89 NTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVR  168 (307)
T ss_pred             ccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEE
Confidence            86        47788999999999999999999999999997642  1211111                          


Q ss_pred             -------------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCCcc
Q psy10953        127 -------------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEE  172 (181)
Q Consensus       127 -------------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  172 (181)
                                   ...+|++++|++|++...+++-|+.+++.|-.+|+.+....|.+..
T Consensus       169 tydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~  227 (307)
T KOG0316|consen  169 TYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNM  227 (307)
T ss_pred             EEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccc
Confidence                         1236777777777777777777777777777777776666665443

>KOG0289|consensus

Probab=99.88  E-value=1.3e-20  Score=142.59  Aligned_cols=150  Identities=21%  Similarity=0.410  Sum_probs=130.8

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR--GKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      +..++..|..+..+|.|.||+++++|++..+.|++++..+......  +....+..|+|||..|.+|..|+.+++||+..
T Consensus       299 ~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks  378 (506)
T KOG0289|consen  299 SRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKS  378 (506)
T ss_pred             cccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCC
Confidence            3446667889999999999999999999999999999988776653  23456899999999999999999999999963


Q ss_pred             --------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC--cEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         85 --------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD--QVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~--~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                              +|.+.|..++|+.+|-+|++++.|+.|++||++..+.+.++....  ++.+++|.+.|++++.++.+-.|++
T Consensus       379 ~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~  458 (506)
T KOG0289|consen  379 QTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYI  458 (506)
T ss_pred             ccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEE
Confidence                    588999999999999999999999999999999888777776443  5999999999999999987767777


Q ss_pred             Ee
Q psy10953        155 YS  156 (181)
Q Consensus       155 ~~  156 (181)
                      +.
T Consensus       459 ~~  460 (506)
T KOG0289|consen  459 CK  460 (506)
T ss_pred             Ee
Confidence            66

>KOG0318|consensus

Probab=99.88  E-value=2e-20  Score=144.35  Aligned_cols=155  Identities=21%  Similarity=0.390  Sum_probs=127.4

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEECCCCCEEEEeeC----CCcEEEEeCC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL--EQIFDTRGKFTLSIAYSTDGHWIASGAL----DGIINIFDAN   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~s~d~~~l~~~~~----d~~v~i~d~~   83 (181)
                      +...+.-..+||.|-++|+|...|+||+||......  ...++.-...+..++|+.|++.|++.+.    -|.+.+||.-
T Consensus        58 H~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg~~F~~DSG  137 (603)
T KOG0318|consen   58 HAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFGHVFLWDSG  137 (603)
T ss_pred             ccceeEEEEeCCCceEEeecCCcCcEEEEeccCcceeeeeeeeecccccccceeCCCCcEEEEEecCccceeEEEEecCC
Confidence            344556788999999999999999999999865332  2445555566788999999998887653    2567778742


Q ss_pred             C-------------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy10953         84 T-------------------------------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVW  114 (181)
Q Consensus        84 ~-------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~  114 (181)
                      +                                                 .|...|+++.|+|||.++++++.||++++|
T Consensus       138 ~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat~gsDgki~iy  217 (603)
T KOG0318|consen  138 NSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFATAGSDGKIYIY  217 (603)
T ss_pred             CccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEEecCCccEEEE
Confidence            1                                                 255679999999999999999999999999


Q ss_pred             ecCCCceeeeee----cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        115 NFARRENMHTFK----HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       115 d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      |-.+++.+..+.    |.+.|..++|+||++.++++|.|.+++||+..+...+.
T Consensus       218 DGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~  271 (603)
T KOG0318|consen  218 DGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVS  271 (603)
T ss_pred             cCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEE
Confidence            999999888774    78899999999999999999999999999998775543

>KOG0276|consensus

Probab=99.87  E-value=2.5e-21  Score=152.05  Aligned_cols=166  Identities=24%  Similarity=0.440  Sum_probs=147.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +...+++...+++...|=+..+++++|++|..|++|+..+++.+..|..|.+.+.+++.+|...++++++.|-.+++||-
T Consensus        47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~w  126 (794)
T KOG0276|consen   47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDW  126 (794)
T ss_pred             eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccceeeEEeeccccceeeeeecCCCCeEEecCCccEEEEeec
Confidence            34567777888889999999999999999999999999999999999999999999999999999999999999999997


Q ss_pred             C---------CCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCC--CEEEEEcCC
Q psy10953         83 N---------TGHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG--DKFVSVGED  149 (181)
Q Consensus        83 ~---------~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g--~~l~~~~~d  149 (181)
                      +         .||..+|..++|.|. .+.+++++-|++|++|.+....+..++. |...|+|+++-+-|  -++++|+.|
T Consensus       127 e~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD  206 (794)
T KOG0276|consen  127 ENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADD  206 (794)
T ss_pred             cCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCC
Confidence            5         478999999999995 5799999999999999999888877776 88899999998765  489999999


Q ss_pred             CcEEEEeCCCCeeEEEcCC
Q psy10953        150 KAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~~~~~  168 (181)
                      ..+++||+++..=+..++|
T Consensus       207 ~tiKvWDyQtk~CV~TLeG  225 (794)
T KOG0276|consen  207 LTIKVWDYQTKSCVQTLEG  225 (794)
T ss_pred             ceEEEeecchHHHHHHhhc
Confidence            9999999987654444444

>KOG0313|consensus

Probab=99.87  E-value=5.9e-21  Score=142.20  Aligned_cols=153  Identities=27%  Similarity=0.431  Sum_probs=133.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..+..+...|.++.|++ ...+.+++.|++|+.||+.+++.+..+..... ..++..+|..++|++|+.|..+++||+
T Consensus       252 P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~~~~~~ks-l~~i~~~~~~~Ll~~gssdr~irl~DP  329 (423)
T KOG0313|consen  252 PLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKS-LNCISYSPLSKLLASGSSDRHIRLWDP  329 (423)
T ss_pred             ceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccceeeeecCcc-eeEeecccccceeeecCCCCceeecCC
Confidence            5778899999999999987 67788999999999999999998877765444 468999999999999999999999999


Q ss_pred             CC-----------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCc-eeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         83 NT-----------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRE-NMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        83 ~~-----------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      ++           +|.++|.++.|+|... +|++++.|+++++||+++.+ ++..+. |.++|.++.|. ++..+++||.
T Consensus       330 R~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~-~~~~IvSGGa  408 (423)
T KOG0313|consen  330 RTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWN-EGGLIVSGGA  408 (423)
T ss_pred             CCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEecc-CCceEEeccC
Confidence            74           5888999999999765 78899999999999999876 666664 88899999986 4568999999


Q ss_pred             CCcEEEEeCC
Q psy10953        149 DKAVHMYSYK  158 (181)
Q Consensus       149 d~~v~i~~~~  158 (181)
                      |++++++...
T Consensus       409 D~~l~i~~~~  418 (423)
T KOG0313|consen  409 DNKLRIFKGS  418 (423)
T ss_pred             cceEEEeccc
Confidence            9999998753

>KOG0292|consensus

Probab=99.87  E-value=7.4e-21  Score=154.34  Aligned_cols=160  Identities=19%  Similarity=0.339  Sum_probs=142.0

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .|.++..+..+++.+.|++.--+++++|+|.+|++|+-++++.+..+..|.+.++|..|+|....+++++-|.+|++||+
T Consensus        85 clftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDi  164 (1202)
T KOG0292|consen   85 CLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDI  164 (1202)
T ss_pred             ehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEee
Confidence            57778889999999999999999999999999999999999999999999999999999999999999999999999996


Q ss_pred             C-------------------------------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--ee
Q psy10953         83 N-------------------------------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--MH  123 (181)
Q Consensus        83 ~-------------------------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~  123 (181)
                      .                                     .||...|+-++|+|.--++++|+.|..|++|.+...+.  +.
T Consensus       165 sGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvD  244 (1202)
T KOG0292|consen  165 SGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVD  244 (1202)
T ss_pred             cchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeeh
Confidence            3                                     13556678899999999999999999999998865431  22


Q ss_pred             ee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        124 TF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       124 ~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      +. .|.+.|.++-|+|..+.+++.|+|+.|++||+.....
T Consensus       245 tcrgH~nnVssvlfhp~q~lIlSnsEDksirVwDm~kRt~  284 (1202)
T KOG0292|consen  245 TCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTKRTS  284 (1202)
T ss_pred             hhhcccCCcceEEecCccceeEecCCCccEEEEecccccc
Confidence            22 4888999999999999999999999999999976543

>KOG0277|consensus

Probab=99.87  E-value=1.3e-20  Score=134.18  Aligned_cols=155  Identities=22%  Similarity=0.425  Sum_probs=125.0

Q ss_pred             EEEEEEcCC-CCEEEEEeCCCcEEEEeCC-CCcEEEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCC-------
Q psy10953         14 MWNVVFSPD-DKYVLSGSQSGKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDAN-------   83 (181)
Q Consensus        14 ~~~~~~s~~-g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~-------   83 (181)
                      .++++|+++ .+.+++++.||++++||+. ..+.++.++.|...+.++.|++- ++.+++++.|++|++|+..       
T Consensus        63 LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~T  142 (311)
T KOG0277|consen   63 LFDVAWSENHENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQT  142 (311)
T ss_pred             eeEeeecCCCcceEEEEecCceEEEeccCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEe
Confidence            689999985 4567899999999999974 44567778888888899999884 5667889999999999975       


Q ss_pred             -CCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccC-CCEEEEEcCCCcEEEEeCCC
Q psy10953         84 -TGHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        84 -~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~  159 (181)
                       ++|...|..++|+|. ++++++++.|+.+++||++.......++ |..++.++.|+.- .+.+++++.|+.|++||++.
T Consensus       143 f~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~  222 (311)
T KOG0277|consen  143 FNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRN  222 (311)
T ss_pred             ecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhh
Confidence             468888999999995 6799999999999999998754444465 6678999999974 55688899999999999865


Q ss_pred             C-eeEEEcCC
Q psy10953        160 E-EEVEVNGG  168 (181)
Q Consensus       160 ~-~~~~~~~~  168 (181)
                      - .++.++.+
T Consensus       223 ~r~pl~eL~g  232 (311)
T KOG0277|consen  223 LRTPLFELNG  232 (311)
T ss_pred             ccccceeecC
Confidence            3 34443333

>KOG1407|consensus

Probab=99.87  E-value=1.3e-20  Score=134.65  Aligned_cols=149  Identities=25%  Similarity=0.432  Sum_probs=126.4

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------
Q psy10953         14 MWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------   84 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------   84 (181)
                      |-.++|+| ...++++++.|++|++||.+.++........+..+ -+.|+|+|++++.++.|..+...|.++        
T Consensus        67 vdql~w~~~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni-~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~  145 (313)
T KOG1407|consen   67 VDQLCWDPKHPDLFATASGDKTIRIWDIRSGKCTARIETKGENI-NITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQ  145 (313)
T ss_pred             hhhheeCCCCCcceEEecCCceEEEEEeccCcEEEEeeccCcce-EEEEcCCCCEEEEecCcccEEEEEecccceeehhc
Confidence            44567776 55678999999999999999999998888777765 689999999999999999999998752        


Q ss_pred             -----------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q psy10953         85 -----------------------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH  123 (181)
Q Consensus        85 -----------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~  123 (181)
                                                               .|..-..++.|+|+|+++++|++|..+.+||+...-+..
T Consensus       146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence                                                     133334678999999999999999999999998877777


Q ss_pred             eee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        124 TFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       124 ~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      .+. +.-+|+.+.||-||++|+++|+|..|-|=+.++|.++
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~  266 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV  266 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeE
Confidence            775 5568999999999999999999999988777777665

>KOG0640|consensus

Probab=99.87  E-value=6.4e-21  Score=139.33  Aligned_cols=156  Identities=19%  Similarity=0.326  Sum_probs=130.5

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC------------C------cEEEEEecCCceEEEEEECCCCCE
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET------------G------KLEQIFDTRGKFTLSIAYSTDGHW   67 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~------------~------~~~~~~~~~~~~~~~~~~s~d~~~   67 (181)
                      -++.+...+++.+|||||.++++|+.|..|+++|++.            +      .+++.+-.|.+.+.++.|+|....
T Consensus       107 ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre~I  186 (430)
T KOG0640|consen  107 YLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRETI  186 (430)
T ss_pred             EEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchhhe
Confidence            3556777789999999999999999999999999861            1      122223234556779999999999


Q ss_pred             EEEeeCCCcEEEEeCCCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee----ecCCcEEE
Q psy10953         68 IASGALDGIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF----KHADQVWC  133 (181)
Q Consensus        68 l~~~~~d~~v~i~d~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~~  133 (181)
                      |++++.|+.|+++|..+.          ....|.++.|+|.|.+++.|...-.+++||+.+.+++..-    +|.+.|.+
T Consensus       187 LiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai~~  266 (430)
T KOG0640|consen  187 LISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAITQ  266 (430)
T ss_pred             EEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccceeE
Confidence            999999999999998642          3456899999999999999999999999999998776544    47788999


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      +.+|+.|+..++++.||.|++||-....
T Consensus       267 V~Ys~t~~lYvTaSkDG~IklwDGVS~r  294 (430)
T KOG0640|consen  267 VRYSSTGSLYVTASKDGAIKLWDGVSNR  294 (430)
T ss_pred             EEecCCccEEEEeccCCcEEeeccccHH
Confidence            9999999999999999999999965543

>KOG0319|consensus

Probab=99.87  E-value=2.6e-21  Score=154.00  Aligned_cols=156  Identities=22%  Similarity=0.390  Sum_probs=134.8

Q ss_pred             eeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEE---EEE------ecCCceEEEEEECCCCCEEEEeeCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLE---QIF------DTRGKFTLSIAYSTDGHWIASGALD   74 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~---~~~------~~~~~~~~~~~~s~d~~~l~~~~~d   74 (181)
                      .....+...+.+++++..+- .+++++.|.++++|++...+..   ..+      ..|+..+.+++++|+.+++++|+.|
T Consensus       405 a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqD  484 (775)
T KOG0319|consen  405 AQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQD  484 (775)
T ss_pred             hhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccc
Confidence            34455777788899976554 6789999999999999752211   112      2356678899999999999999999


Q ss_pred             CcEEEEeCC--------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEE
Q psy10953         75 GIINIFDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        75 ~~v~i~d~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~  145 (181)
                      +++++|++.        .+|+..+.++.|+|..+.++|++.|++|+||.+.++.++.++. |...|..+.|-.+|+.|++
T Consensus       485 ktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS  564 (775)
T KOG0319|consen  485 KTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLIS  564 (775)
T ss_pred             cceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEe
Confidence            999999986        4799999999999999999999999999999999999999998 9999999999999999999


Q ss_pred             EcCCCcEEEEeCCCC
Q psy10953        146 VGEDKAVHMYSYKPE  160 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~  160 (181)
                      ++.||.+++|++++.
T Consensus       565 ~~adGliKlWnikt~  579 (775)
T KOG0319|consen  565 AGADGLIKLWNIKTN  579 (775)
T ss_pred             ccCCCcEEEEeccch
Confidence            999999999999764

>KOG0306|consensus

Probab=99.87  E-value=8.9e-21  Score=151.45  Aligned_cols=161  Identities=26%  Similarity=0.473  Sum_probs=133.1

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CcE---E-----EEEecCCceEEEEEECCCCCEEEEeeC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET-----GKL---E-----QIFDTRGKFTLSIAYSTDGHWIASGAL   73 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-----~~~---~-----~~~~~~~~~~~~~~~s~d~~~l~~~~~   73 (181)
                      +..+...+|+++.+||++.+++|+.|++|++||..-     +..   +     ..+.. ...+.++++||||++|+.+--
T Consensus       450 i~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel-~ddvL~v~~Spdgk~LaVsLL  528 (888)
T KOG0306|consen  450 IRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLEL-EDDVLCVSVSPDGKLLAVSLL  528 (888)
T ss_pred             hhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEec-cccEEEEEEcCCCcEEEEEec
Confidence            345677799999999999999999999999998631     211   1     12222 334679999999999999999


Q ss_pred             CCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEEE
Q psy10953         74 DGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        74 d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~  144 (181)
                      |++|++|=+.+        ||.-+|.++.+|||+++++||++|++|++|-+.-+.+-.++ .|.+.|.++-|-|+..+++
T Consensus       529 dnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~FF  608 (888)
T KOG0306|consen  529 DNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHLFF  608 (888)
T ss_pred             cCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEcccceeEE
Confidence            99999997764        79999999999999999999999999999998888777666 4889999999999999999


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      ++|.|+.|+-||-...+.+..+.+
T Consensus       609 t~gKD~kvKqWDg~kFe~iq~L~~  632 (888)
T KOG0306|consen  609 TCGKDGKVKQWDGEKFEEIQKLDG  632 (888)
T ss_pred             EecCcceEEeechhhhhhheeecc
Confidence            999999999998655444433333

>KOG0275|consensus

Probab=99.86  E-value=3.4e-21  Score=141.64  Aligned_cols=156  Identities=33%  Similarity=0.499  Sum_probs=134.5

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-------   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-------   84 (181)
                      .+.+++||.|...+|+|+.||.|++|.+++|++++.|. .|..-+.++.||.|+..+++++.|.++++--+++       
T Consensus       265 aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEf  344 (508)
T KOG0275|consen  265 AVLCISFSRDSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEF  344 (508)
T ss_pred             ceEEEeecccHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHh
Confidence            47899999999999999999999999999999998887 5666678999999999999999999999998864       


Q ss_pred             -CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC---CcEEEEEEccC-CCEEEEEcCCCcEEEEeCCC
Q psy10953         85 -GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA---DQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        85 -~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~  159 (181)
                       +|.++|+.+.|+++|.++++++.||+|++|+.++.+++.+++..   -+|+++-+-|. ...++++...++|++-++. 
T Consensus       345 rGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~q-  423 (508)
T KOG0275|consen  345 RGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQ-  423 (508)
T ss_pred             cCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEecc-
Confidence             68899999999999999999999999999999999998888632   35777766664 5678888888999999984 


Q ss_pred             CeeEEEcCCC
Q psy10953        160 EEEVEVNGGG  169 (181)
Q Consensus       160 ~~~~~~~~~~  169 (181)
                      |+.++...-|
T Consensus       424 GQvVrsfsSG  433 (508)
T KOG0275|consen  424 GQVVRSFSSG  433 (508)
T ss_pred             ceEEeeeccC
Confidence            5666544443

>KOG0647|consensus

Probab=99.86  E-value=3e-20  Score=135.00  Aligned_cols=151  Identities=21%  Similarity=0.386  Sum_probs=123.7

Q ss_pred             eccCeee-EEEEEEcC-CCCEEEEEeCCCcEEEEeCCC-CcEEEE-EecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          7 INVGPVD-MWNVVFSP-DDKYVLSGSQSGKINLYGVET-GKLEQI-FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         7 ~~~~~~~-~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~-~~~~~~-~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +..+|.+ ++.++||| ....+++++.|++||+|+++. |..... ...+...+.+++|+.||..+++|+.|+.+++||+
T Consensus        22 v~~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL  101 (347)
T KOG0647|consen   22 VPNPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDL  101 (347)
T ss_pred             cCCCcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCCceEEeeccCCceEEEEc
Confidence            3334443 79999999 556667999999999999975 555542 2345667889999999999999999999999999


Q ss_pred             CCC-------CcccEEEEEEcCCCC--EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         83 NTG-------HSSWVLSTAFTRDGK--FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        83 ~~~-------~~~~v~~~~~s~~~~--~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .++       |...|..+.|-+...  .|+||+-|+++++||++...++.++..+++++++..  -...++.+..++.|.
T Consensus       102 ~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv--~~pm~vVata~r~i~  179 (347)
T KOG0647|consen  102 ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADV--LYPMAVVATAERHIA  179 (347)
T ss_pred             cCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhc--cCceeEEEecCCcEE
Confidence            865       677888888877654  899999999999999999999999999999988754  345677788899999


Q ss_pred             EEeCCC
Q psy10953        154 MYSYKP  159 (181)
Q Consensus       154 i~~~~~  159 (181)
                      +|++..
T Consensus       180 vynL~n  185 (347)
T KOG0647|consen  180 VYNLEN  185 (347)
T ss_pred             EEEcCC
Confidence            999843

>KOG0267|consensus

Probab=99.86  E-value=3.6e-22  Score=158.69  Aligned_cols=161  Identities=21%  Similarity=0.381  Sum_probs=144.8

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .|..+..++..+-++.|+++..+|++|+.+|+|++||++..+..+.+..+-..+.++.|+|-+.+++.|+.|...++||.
T Consensus        62 ~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~  141 (825)
T KOG0267|consen   62 AITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDI  141 (825)
T ss_pred             hhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhh
Confidence            35567888899999999999999999999999999999999988877777666678999999999999999999999999


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      +.        +|...+..+.|+|+|++++.++.|..+++||+..++.+..|. |.+.+..+.|+|..-.+++||.|+.++
T Consensus       142 Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~  221 (825)
T KOG0267|consen  142 RKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVR  221 (825)
T ss_pred             hccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCceee
Confidence            72        455668889999999999999999999999999999999998 889999999999999999999999999


Q ss_pred             EEeCCCCeeE
Q psy10953        154 MYSYKPEEEV  163 (181)
Q Consensus       154 i~~~~~~~~~  163 (181)
                      +|++++.+.+
T Consensus       222 f~dletfe~I  231 (825)
T KOG0267|consen  222 FWDLETFEVI  231 (825)
T ss_pred             eeccceeEEe
Confidence            9999765443

>KOG0289|consensus

Probab=99.86  E-value=3e-20  Score=140.60  Aligned_cols=157  Identities=18%  Similarity=0.326  Sum_probs=139.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+..+.|+|+...+++++.|..|++|.............|...+..+..+|.|.+|++++.|+...+.|++
T Consensus       254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~  333 (506)
T KOG0289|consen  254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDIS  333 (506)
T ss_pred             hhhccCcceEEEEEEeccchhheeecCCcceEEeeccccccCccccccccccceeeeeccCCcEEEEecCCceEEEEEcc
Confidence            44566788999999999999999999999999999988777666666777788899999999999999999999999988


Q ss_pred             CCCc----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         84 TGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        84 ~~~~----------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      ++..          ..+.+.+|+|||..|.++..|+.+++||+..+.....|+ |.++|..++|+.+|-++++++.|+.|
T Consensus       334 ~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V  413 (506)
T KOG0289|consen  334 SGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSV  413 (506)
T ss_pred             CCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeE
Confidence            6531          236788999999999999999999999999998888886 89999999999999999999999999


Q ss_pred             EEEeCCCC
Q psy10953        153 HMYSYKPE  160 (181)
Q Consensus       153 ~i~~~~~~  160 (181)
                      ++||++.-
T Consensus       414 ~lwDLRKl  421 (506)
T KOG0289|consen  414 KLWDLRKL  421 (506)
T ss_pred             EEEEehhh
Confidence            99998653

>KOG0310|consensus

Probab=99.86  E-value=4.9e-20  Score=140.87  Aligned_cols=154  Identities=19%  Similarity=0.366  Sum_probs=129.0

Q ss_pred             eeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEeC
Q psy10953          5 SKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFDA   82 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~   82 (181)
                      ..+..+...+....|+|.++ .+++|++|+.+++||+.+......+..|.+.+.+.+++|... .+++|+.||+|++||+
T Consensus       104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~Dt  183 (487)
T KOG0310|consen  104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDT  183 (487)
T ss_pred             HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEe
Confidence            44566777788899998655 567888999999999998887557778899999999999765 6788999999999999


Q ss_pred             CCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         83 NTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        83 ~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      +..        |..+|..+-+-|.|..+++++ ...+++||+.++ +.+.... |...|+|+++..++..|+++|.|+.|
T Consensus       184 R~~~~~v~elnhg~pVe~vl~lpsgs~iasAg-Gn~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~V  262 (487)
T KOG0310|consen  184 RSLTSRVVELNHGCPVESVLALPSGSLIASAG-GNSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHV  262 (487)
T ss_pred             ccCCceeEEecCCCceeeEEEcCCCCEEEEcC-CCeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccce
Confidence            753        566788899999999999888 458999999854 4454444 88899999999999999999999999


Q ss_pred             EEEeCCC
Q psy10953        153 HMYSYKP  159 (181)
Q Consensus       153 ~i~~~~~  159 (181)
                      ++|++..
T Consensus       263 KVfd~t~  269 (487)
T KOG0310|consen  263 KVFDTTN  269 (487)
T ss_pred             EEEEccc
Confidence            9999643

>KOG0643|consensus

Probab=99.86  E-value=7e-20  Score=131.31  Aligned_cols=153  Identities=31%  Similarity=0.460  Sum_probs=121.6

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---------------------------------
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---------------------------------   53 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------------------------   53 (181)
                      ...+...+|+++++-+.+++++|+.|.++++||+++|+.+..+....                                 
T Consensus        48 y~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi  127 (327)
T KOG0643|consen   48 YDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDI  127 (327)
T ss_pred             ecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEc
Confidence            34566779999999999999999999999999999998765443210                                 


Q ss_pred             --------------------ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC---------CcccEEEEEEcCCCCEEEE
Q psy10953         54 --------------------KFTLSIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFIS  104 (181)
Q Consensus        54 --------------------~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---------~~~~v~~~~~s~~~~~l~~  104 (181)
                                          .-+..+-|+|-++.|++|..||.+..||++++         |...|+.++++|+..++++
T Consensus       128 ~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT  207 (327)
T KOG0643|consen  128 RDDSSDIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFIT  207 (327)
T ss_pred             cCChhhhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEe
Confidence                                01124567777888899999999999999864         5678999999999999999


Q ss_pred             EeCCCcEEEEecCCCceeeee--------------------------------------------------------ecC
Q psy10953        105 ASADHTVRVWNFARRENMHTF--------------------------------------------------------KHA  128 (181)
Q Consensus       105 ~~~d~~i~v~d~~~~~~~~~~--------------------------------------------------------~~~  128 (181)
                      ++.|.+.++||+.+.+.+.++                                                        .|-
T Consensus       208 ~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHF  287 (327)
T KOG0643|consen  208 GSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHF  287 (327)
T ss_pred             cccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhccccccc
Confidence            999999999997532211111                                                        134


Q ss_pred             CcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       129 ~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      ++|++++|+|+|+.+++|++||.|++..+..
T Consensus       288 GPINsvAfhPdGksYsSGGEDG~VR~h~Fd~  318 (327)
T KOG0643|consen  288 GPINSVAFHPDGKSYSSGGEDGYVRLHHFDS  318 (327)
T ss_pred             cCcceeEECCCCcccccCCCCceEEEEEecc
Confidence            5789999999999999999999999987654

>KOG0973|consensus

Probab=99.85  E-value=4.1e-20  Score=152.23  Aligned_cols=152  Identities=24%  Similarity=0.401  Sum_probs=129.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCC------------cEEEEEecCCceEEEEEECCCCCEEEEeeCCC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGS--QSGKINLYGVETG------------KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG   75 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~--~d~~i~~~d~~~~------------~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~   75 (181)
                      +...++.++.+|||..++||+  .|+.+++|+.+.-            +.+.....|...+.|+.|+|||++||+|+.|+
T Consensus        12 ~~~~IfSIdv~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGSDD~   91 (942)
T KOG0973|consen   12 NEKSIFSIDVHPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDGSVNCVRFSPDGSYLASGSDDR   91 (942)
T ss_pred             CCeeEEEEEecCCceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccCceeEEEECCCCCeEeeccCcc
Confidence            455689999999999999999  8999999976422            11122233556678999999999999999999


Q ss_pred             cEEEEeCCC--------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cC
Q psy10953         76 IINIFDANT--------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA  128 (181)
Q Consensus        76 ~v~i~d~~~--------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  128 (181)
                      .|.+|+...                          +|...|..+.|+|++.+|++++.|.+|.+||.++.+.+..+. |.
T Consensus        92 ~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~  171 (942)
T KOG0973|consen   92 LVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQ  171 (942)
T ss_pred             eEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeeccc
Confidence            999998651                          366778999999999999999999999999999998887776 88


Q ss_pred             CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       129 ~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      ..|-++.|.|-|++|++-+.|+.|++|+....+
T Consensus       172 s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~  204 (942)
T KOG0973|consen  172 SLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWG  204 (942)
T ss_pred             ccccceEECCccCeeeeecCCceEEEEEcccce
Confidence            999999999999999999999999999976543

>KOG0639|consensus

Probab=99.85  E-value=8.7e-21  Score=146.02  Aligned_cols=159  Identities=21%  Similarity=0.408  Sum_probs=130.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c--EEEEEe--cCCceEEEEEECCCCCEEEEeeCCCcE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-K--LEQIFD--TRGKFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-~--~~~~~~--~~~~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      +|..+.-++. |..+.+|...++++||+ .|.|++||+... .  .+..+.  ..+.++.++.+.|||+.|++|+.-.++
T Consensus       412 q~~tL~HGEv-VcAvtIS~~trhVyTgG-kgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdgrtLivGGeastl  489 (705)
T KOG0639|consen  412 QINTLAHGEV-VCAVTISNPTRHVYTGG-KGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDGRTLIVGGEASTL  489 (705)
T ss_pred             hhhhhccCcE-EEEEEecCCcceeEecC-CCeEEEeeccCCCCCCccccccccCcccceeeeEecCCCceEEecccccee
Confidence            4555555555 78899999999998887 789999999532 1  122222  245567889999999999999999999


Q ss_pred             EEEeCCCCC----------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEE
Q psy10953         78 NIFDANTGH----------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        78 ~i~d~~~~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~  146 (181)
                      .|||+....          .....+++.+||.+.+++++.||+|.|||+.+...+.+++ |++.+.|+.+++||..|.+|
T Consensus       490 siWDLAapTprikaeltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTG  569 (705)
T KOG0639|consen  490 SIWDLAAPTPRIKAELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTG  569 (705)
T ss_pred             eeeeccCCCcchhhhcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecC
Confidence            999986421          1234678899999999999999999999999999999987 99999999999999999999


Q ss_pred             cCCCcEEEEeCCCCeeE
Q psy10953        147 GEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~~~  163 (181)
                      +.|+.|+.||++++.++
T Consensus       570 GlDntvRcWDlregrql  586 (705)
T KOG0639|consen  570 GLDNTVRCWDLREGRQL  586 (705)
T ss_pred             CCccceeehhhhhhhhh
Confidence            99999999999876543

>KOG0296|consensus

Probab=99.85  E-value=2.7e-19  Score=132.84  Aligned_cols=165  Identities=20%  Similarity=0.309  Sum_probs=145.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..++.+...|.++.||.||.+||||+.+|.|++|+..++.....+......+.-++|+|.+..|++|+.||.+.+|.+.
T Consensus        99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip  178 (399)
T KOG0296|consen   99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIP  178 (399)
T ss_pred             eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECC
Confidence            45677788889999999999999999999999999999998877665455556679999999999999999999999986


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .        +|...+++=.|.|+|+.++++..|++|++||++++.+++.+.  ......++.++..+..++.|+.++.++
T Consensus       179 ~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~  258 (399)
T KOG0296|consen  179 SQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVAC  258 (399)
T ss_pred             CcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEE
Confidence            5        577777888899999999999999999999999999888775  334577889999999999999999999


Q ss_pred             EEeCCCCeeEEEcCC
Q psy10953        154 MYSYKPEEEVEVNGG  168 (181)
Q Consensus       154 i~~~~~~~~~~~~~~  168 (181)
                      +-+..++.-+...++
T Consensus       259 ~~~~~sgKVv~~~n~  273 (399)
T KOG0296|consen  259 GVNNGSGKVVNCNNG  273 (399)
T ss_pred             EEccccceEEEecCC
Confidence            999999888877775

>KOG0277|consensus

Probab=99.85  E-value=3e-20  Score=132.36  Aligned_cols=157  Identities=20%  Similarity=0.339  Sum_probs=132.6

Q ss_pred             ceeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~   80 (181)
                      +|..++-++.+|+++.|++ +++.+++++.|++|++|+....+-++.+..+...++...|+|. ++.+++++.|+.+++|
T Consensus        96 Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lw  175 (311)
T KOG0277|consen   96 PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLW  175 (311)
T ss_pred             chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEE
Confidence            6777777888999999997 4556788999999999999888888899999999999999994 6889999999999999


Q ss_pred             eCCCC--------CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCc-eeeee-ecCCcEEEEEEccCC-CEEEEEcC
Q psy10953         81 DANTG--------HSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRE-NMHTF-KHADQVWCVCVAPDG-DKFVSVGE  148 (181)
Q Consensus        81 d~~~~--------~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~-~~~~~-~~~~~v~~~~~sp~g-~~l~~~~~  148 (181)
                      |++..        |...+.++.|+. +.+.++|++.|+.|+.||++.-+ ++..+ .|.-.|+.+.|||.. ..|++++.
T Consensus       176 dvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasY  255 (311)
T KOG0277|consen  176 DVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASY  255 (311)
T ss_pred             EecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccc
Confidence            98742        555678888887 55789999999999999998754 34444 377789999999975 46889999


Q ss_pred             CCcEEEEeCCC
Q psy10953        149 DKAVHMYSYKP  159 (181)
Q Consensus       149 d~~v~i~~~~~  159 (181)
                      |-++++|+...
T Consensus       256 DmT~riw~~~~  266 (311)
T KOG0277|consen  256 DMTVRIWDPER  266 (311)
T ss_pred             cceEEeccccc
Confidence            99999999863

>KOG0281|consensus

Probab=99.85  E-value=9.2e-21  Score=140.35  Aligned_cols=157  Identities=21%  Similarity=0.389  Sum_probs=128.7

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...|.++.|  +.+.+++|+.|.+|++||.++++.+..+.+|...+..+.|+  ..++++.+.|.++.+||..
T Consensus       230 ~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~--ng~mvtcSkDrsiaVWdm~  305 (499)
T KOG0281|consen  230 LKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFS--NGYMVTCSKDRSIAVWDMA  305 (499)
T ss_pred             HHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEe--CCEEEEecCCceeEEEecc
Confidence            4456777777878777  67799999999999999999999998888888888888886  4679999999999999975


Q ss_pred             C-----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         84 T-----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        84 ~-----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      .           ||...|+.+.|+  .+++++++.|.+|++|++.+.+.+.++. |.-.|-|+  .-.|+++++||.|++
T Consensus       306 sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIACl--QYr~rlvVSGSSDnt  381 (499)
T KOG0281|consen  306 SPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACL--QYRDRLVVSGSSDNT  381 (499)
T ss_pred             CchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEeccceeeehhhhcccccceeh--hccCeEEEecCCCce
Confidence            3           577788888775  4599999999999999999988887775 55556554  347889999999999


Q ss_pred             EEEEeCCCCeeEEEcCC
Q psy10953        152 VHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       152 v~i~~~~~~~~~~~~~~  168 (181)
                      |++|++..|.-++++.|
T Consensus       382 IRlwdi~~G~cLRvLeG  398 (499)
T KOG0281|consen  382 IRLWDIECGACLRVLEG  398 (499)
T ss_pred             EEEEeccccHHHHHHhc
Confidence            99999988766665555

>KOG0283|consensus

Probab=99.84  E-value=9.6e-20  Score=146.69  Aligned_cols=163  Identities=16%  Similarity=0.352  Sum_probs=133.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d   81 (181)
                      ++..+..+..++.+++||.+ ++|++++.|+|||+|.+...+++..|. |..+|.|++|+| |.++|++|+-|+.++||+
T Consensus       361 P~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTcVaFnPvDDryFiSGSLD~KvRiWs  438 (712)
T KOG0283|consen  361 PFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTCVAFNPVDDRYFISGSLDGKVRLWS  438 (712)
T ss_pred             chhhhhccchhheecccccC-CeeEeccccccEEeecCCCcceeeEEe-cCCeeEEEEecccCCCcEeecccccceEEee
Confidence            45567778889999999955 678899999999999999999999986 677788999999 679999999999999999


Q ss_pred             CCCCC-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---c------CCcEEEEEEccCC-CEEE
Q psy10953         82 ANTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---H------ADQVWCVCVAPDG-DKFV  144 (181)
Q Consensus        82 ~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~------~~~v~~~~~sp~g-~~l~  144 (181)
                      +...+       ...|++++|+|+|+..+.|+.+|.+++|+....+....++   +      ..+|+++-|.|.. ..++
T Consensus       439 I~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vL  518 (712)
T KOG0283|consen  439 ISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVL  518 (712)
T ss_pred             cCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEE
Confidence            86432       3568999999999999999999999999988765544332   1      2369999988753 3577


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      +.+.|.+|+|||......+....
T Consensus       519 VTSnDSrIRI~d~~~~~lv~KfK  541 (712)
T KOG0283|consen  519 VTSNDSRIRIYDGRDKDLVHKFK  541 (712)
T ss_pred             EecCCCceEEEeccchhhhhhhc
Confidence            78889999999996554444333

>KOG0973|consensus

Probab=99.84  E-value=1.1e-19  Score=149.75  Aligned_cols=159  Identities=21%  Similarity=0.344  Sum_probs=139.2

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +....+..+..+|.++.|+|++.+|++++.|.+|.+|+.++.+.+..+..|...+..+.|+|-|++|++-+.|+++++|.
T Consensus       120 k~~~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwr  199 (942)
T KOG0973|consen  120 KVVSILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWR  199 (942)
T ss_pred             eEEEEEecCCCccceeccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEE
Confidence            56677888999999999999999999999999999999999999999999988899999999999999999999999998


Q ss_pred             CCC------------------------------------------------------------CCcccEEEEEEcCC---
Q psy10953         82 ANT------------------------------------------------------------GHSSWVLSTAFTRD---   98 (181)
Q Consensus        82 ~~~------------------------------------------------------------~~~~~v~~~~~s~~---   98 (181)
                      ...                                                            ||...+..++|+|.   
T Consensus       200 t~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe  279 (942)
T KOG0973|consen  200 TSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFE  279 (942)
T ss_pred             cccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhc
Confidence            421                                                            35567788888882   


Q ss_pred             --CC------------EEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         99 --GK------------FFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        99 --~~------------~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                        .+            .+++|+.|+.|.||.....+++....  ....|..++|+|||..|+++|.||.|.+..+..+
T Consensus       280 ~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~  357 (942)
T KOG0973|consen  280 RNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK  357 (942)
T ss_pred             cccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence              12            57889999999999998888877665  4567999999999999999999999999998653

>KOG0269|consensus

Probab=99.84  E-value=5.9e-20  Score=147.06  Aligned_cols=153  Identities=19%  Similarity=0.341  Sum_probs=128.3

Q ss_pred             eeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q psy10953          6 KINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDAN   83 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~   83 (181)
                      -+.-++-.+.++.|++- ..+|++|++||+|++||++..+-...+......+..+.|+|. +..|+++...|.+.+||++
T Consensus       128 ~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlR  207 (839)
T KOG0269|consen  128 VFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLR  207 (839)
T ss_pred             HhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeecc
Confidence            33445566788999875 456789999999999999988888888777777889999994 6889999999999999997


Q ss_pred             C---------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCE-EEEEc--CC
Q psy10953         84 T---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDK-FVSVG--ED  149 (181)
Q Consensus        84 ~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~-l~~~~--~d  149 (181)
                      .         .|.+.|.++.|+|++.+||||+.|+.|+|||+.+.+  ...++....++.++.|=|..++ |++++  .|
T Consensus       208 qp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~d  287 (839)
T KOG0269|consen  208 QPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVD  287 (839)
T ss_pred             CchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhcccc
Confidence            3         589999999999999999999999999999998643  4556666678999999998776 56655  47


Q ss_pred             CcEEEEeCC
Q psy10953        150 KAVHMYSYK  158 (181)
Q Consensus       150 ~~v~i~~~~  158 (181)
                      -.|++||+.
T Consensus       288 tsV~VWDvr  296 (839)
T KOG0269|consen  288 TSVHVWDVR  296 (839)
T ss_pred             ceEEEEeec
Confidence            799999984

>KOG0772|consensus

Probab=99.84  E-value=8.6e-20  Score=140.76  Aligned_cols=154  Identities=18%  Similarity=0.310  Sum_probs=115.1

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-----EEEEecCCc---------------------------
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL-----EQIFDTRGK---------------------------   54 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~-----~~~~~~~~~---------------------------   54 (181)
                      +..+..-|+.+++.|.|.++++|+.|.+|++||+..-..     .++.....+                           
T Consensus       163 l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqakl~D  242 (641)
T KOG0772|consen  163 LKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQAKLLD  242 (641)
T ss_pred             ccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcceeEEc
Confidence            344566689999999999999999999999999853200     000000111                           


Q ss_pred             ---------------------------eEEEEEECCCC-CEEEEeeCCCcEEEEeCCCC--------------CcccEEE
Q psy10953         55 ---------------------------FTLSIAYSTDG-HWIASGALDGIINIFDANTG--------------HSSWVLS   92 (181)
Q Consensus        55 ---------------------------~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~~--------------~~~~v~~   92 (181)
                                                 .+.+.+|+|+. ..|++.+.||++++||+...              ..-.+..
T Consensus       243 RdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~ts  322 (641)
T KOG0772|consen  243 RDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTS  322 (641)
T ss_pred             cCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCcee
Confidence                                       12356777765 45778888999999998632              2335788


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCce--eeee--ecCC--cEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARREN--MHTF--KHAD--QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~--~~~~--~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ++|+|+|+++++++.||.|.+|+......  ...+  .|..  .|.|+.||+||++|++-+.|+.+++||++..
T Consensus       323 C~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~  396 (641)
T KOG0772|consen  323 CAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQF  396 (641)
T ss_pred             eecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccc
Confidence            99999999999999999999999865332  1122  2544  7999999999999999999999999998654

>KOG0643|consensus

Probab=99.84  E-value=7.7e-19  Score=126.00  Aligned_cols=158  Identities=13%  Similarity=0.233  Sum_probs=138.2

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      |++| .++.++-.+..+.+..+|.+|++++.|.+..+|-..+|+.+..+..|...++++..+-+.+++++|+.|.++++|
T Consensus         1 mrpi-~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s~~liTGSAD~t~kLW   79 (327)
T KOG0643|consen    1 MRPI-LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLW   79 (327)
T ss_pred             CCcc-ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCcceeeeccccceeEEE
Confidence            4444 467788889999999999999999999999999888999999999999999999999999999999999999999


Q ss_pred             eCCCC-------------------------------------------------------------CcccEEEEEEcCCC
Q psy10953         81 DANTG-------------------------------------------------------------HSSWVLSTAFTRDG   99 (181)
Q Consensus        81 d~~~~-------------------------------------------------------------~~~~v~~~~~s~~~   99 (181)
                      |..++                                                             +.+.++.+-|+|-+
T Consensus        80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~  159 (327)
T KOG0643|consen   80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG  159 (327)
T ss_pred             EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence            97632                                                             11245667899999


Q ss_pred             CEEEEEeCCCcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        100 KFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       100 ~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +++++|..+|.|..||.+++..+...  .|...|+.+.++||..+++++|.|.+.++||..+
T Consensus       160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~t  221 (327)
T KOG0643|consen  160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRT  221 (327)
T ss_pred             CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccc
Confidence            99999999999999999998655544  3778999999999999999999999999999754

>KOG0316|consensus

Probab=99.83  E-value=1.6e-19  Score=127.50  Aligned_cols=111  Identities=18%  Similarity=0.296  Sum_probs=94.4

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS   87 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~   87 (181)
                      ..+--++.+++.+.|...+++++.|+.+.+||+.+|+..+.|..|...+..+.|..+...+++|+.|.++++||-+....
T Consensus        56 sghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~  135 (307)
T KOG0316|consen   56 SGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSF  135 (307)
T ss_pred             cCCCceeeeccccccccccccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCC
Confidence            34455678999999999999999999999999999999999999999999999999999999999999999999865432


Q ss_pred             ----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc
Q psy10953         88 ----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRE  120 (181)
Q Consensus        88 ----------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~  120 (181)
                                ..|.++.  -.+..+++|+.||+++.||++.+.
T Consensus       136 ePiQildea~D~V~Si~--v~~heIvaGS~DGtvRtydiR~G~  176 (307)
T KOG0316|consen  136 EPIQILDEAKDGVSSID--VAEHEIVAGSVDGTVRTYDIRKGT  176 (307)
T ss_pred             CccchhhhhcCceeEEE--ecccEEEeeccCCcEEEEEeecce
Confidence                      2343433  346788999999999999998653

>KOG0302|consensus

Probab=99.83  E-value=1.7e-19  Score=134.46  Aligned_cols=159  Identities=24%  Similarity=0.368  Sum_probs=129.4

Q ss_pred             cceeeeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEE---EEecCCceEEEEEECCCC-CEEEEeeCCCc
Q psy10953          2 KQISKINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQ---IFDTRGKFTLSIAYSTDG-HWIASGALDGI   76 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~~~~---~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~   76 (181)
                      ++|.++..+...=+.++|||- ...|++|.--+.|++|...++....   -|..|...+..++|||.. ..|++++.|+.
T Consensus       202 ~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs  281 (440)
T KOG0302|consen  202 RPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS  281 (440)
T ss_pred             CceEEecccCccceeeecccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence            567777887777799999993 2347788777899999988776542   234467778889999965 67889999999


Q ss_pred             EEEEeCCCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC---Cceeeeee-cCCcEEEEEEccCC-C
Q psy10953         77 INIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFAR---RENMHTFK-HADQVWCVCVAPDG-D  141 (181)
Q Consensus        77 v~i~d~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~-~~~~v~~~~~sp~g-~  141 (181)
                      |+|||++.+          |.+.|+.+.|+.+-.+|++|+.||+++|||++.   ++++.+++ |..+|+++.|+|.. .
T Consensus       282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s  361 (440)
T KOG0302|consen  282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS  361 (440)
T ss_pred             EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence            999999854          566788999999888999999999999999986   45677776 78899999999965 4


Q ss_pred             EEEEEcCCCcEEEEeCCCC
Q psy10953        142 KFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~~  160 (181)
                      .|++++.|++|.+||+..+
T Consensus       362 ~iaasg~D~QitiWDlsvE  380 (440)
T KOG0302|consen  362 VIAASGEDNQITIWDLSVE  380 (440)
T ss_pred             eEEeccCCCcEEEEEeecc
Confidence            6788888999999999543

>KOG0305|consensus

Probab=99.83  E-value=7.7e-19  Score=137.68  Aligned_cols=156  Identities=18%  Similarity=0.354  Sum_probs=133.4

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-CCEEEEe--eCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-GHWIASG--ALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~--~~d~~v~i~d~~   83 (181)
                      ++.+..+|..+.|++|++++|+|+.|..+.+||.........+..|...+..++|+|- ...||+|  +.|+.+++||..
T Consensus       297 ~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~  376 (484)
T KOG0305|consen  297 LQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTN  376 (484)
T ss_pred             hhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcC
Confidence            6778889999999999999999999999999999777777777778888999999994 5677875  569999999998


Q ss_pred             CCC-------cccEEEEEEcCCCCEEEE-Ee-CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 TGH-------SSWVLSTAFTRDGKFFIS-AS-ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 ~~~-------~~~v~~~~~s~~~~~l~~-~~-~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      +++       ...|..+.|++..+-+++ .+ .+..|.||+..+.+.+..+. |..+|..+++||||..+++++.|.+++
T Consensus       377 ~g~~i~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlr  456 (484)
T KOG0305|consen  377 TGARIDSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLR  456 (484)
T ss_pred             CCcEecccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEE
Confidence            764       467999999999865544 33 46789999999887777775 899999999999999999999999999


Q ss_pred             EEeCCCCee
Q psy10953        154 MYSYKPEEE  162 (181)
Q Consensus       154 i~~~~~~~~  162 (181)
                      +|++-...+
T Consensus       457 fw~~f~~~~  465 (484)
T KOG0305|consen  457 FWNLFDERP  465 (484)
T ss_pred             eccccCCCC
Confidence            999876533

>KOG1274|consensus

Probab=99.83  E-value=9.2e-19  Score=142.44  Aligned_cols=150  Identities=17%  Similarity=0.315  Sum_probs=131.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC---
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH---   86 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---   86 (181)
                      ...++.+++|+.+|+++|.|++|-.|++.++.+......+..+...+.++.|+|.++.||+.+.||.|++||+..+.   
T Consensus        95 ftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~  174 (933)
T KOG1274|consen   95 FTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSK  174 (933)
T ss_pred             eeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhh
Confidence            34557889999999999999999999999999998888888888889999999999999999999999999987531   


Q ss_pred             -------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         87 -------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        87 -------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                                   ...+..++|+|+|..++..+.|+.|++|+.........+.   +...+.++.|+|+|+|||+++.+|
T Consensus       175 tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g  254 (933)
T KOG1274|consen  175 TLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAASTLDG  254 (933)
T ss_pred             hcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEeeeccCC
Confidence                         2345678999998888888889999999999887766653   344589999999999999999999


Q ss_pred             cEEEEeCCC
Q psy10953        151 AVHMYSYKP  159 (181)
Q Consensus       151 ~v~i~~~~~  159 (181)
                      .|.|||.++
T Consensus       255 ~I~vWnv~t  263 (933)
T KOG1274|consen  255 QILVWNVDT  263 (933)
T ss_pred             cEEEEeccc
Confidence            999999984

>KOG0641|consensus

Probab=99.83  E-value=1.6e-18  Score=122.19  Aligned_cols=151  Identities=19%  Similarity=0.354  Sum_probs=117.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--E---EEEecCCceEEEEEE-----------------------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL--E---QIFDTRGKFTLSIAY-----------------------   61 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~--~---~~~~~~~~~~~~~~~-----------------------   61 (181)
                      +...+++.+|||+|+++++|++|++|++........  .   ..|..|...+..++|                       
T Consensus        88 hkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~  167 (350)
T KOG0641|consen   88 HKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYI  167 (350)
T ss_pred             cCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEE
Confidence            445689999999999999999999988875532211  0   112222222222222                       


Q ss_pred             -----------------------CCCCCEEEEeeCCCcEEEEeCCCC---------------CcccEEEEEEcCCCCEEE
Q psy10953         62 -----------------------STDGHWIASGALDGIINIFDANTG---------------HSSWVLSTAFTRDGKFFI  103 (181)
Q Consensus        62 -----------------------s~d~~~l~~~~~d~~v~i~d~~~~---------------~~~~v~~~~~s~~~~~l~  103 (181)
                                             +=+|-++++|+.|.+|++||++..               +.+.|.+++..|.|++|+
T Consensus       168 tdc~~g~~~~a~sghtghilalyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~  247 (350)
T KOG0641|consen  168 TDCGRGQGFHALSGHTGHILALYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLA  247 (350)
T ss_pred             eecCCCCcceeecCCcccEEEEEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceee
Confidence                                   224556788999999999998621               345789999999999999


Q ss_pred             EEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        104 SASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       104 ~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ++-.|..+.+||++.+..+..+. |...|.++.|||...++.+++.|..|++-|++..
T Consensus       248 sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlqgd  305 (350)
T KOG0641|consen  248 SGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGD  305 (350)
T ss_pred             eccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecccc
Confidence            99999999999999998888775 8889999999999999999999999999998643

>KOG0264|consensus

Probab=99.82  E-value=4.6e-19  Score=134.43  Aligned_cols=154  Identities=23%  Similarity=0.402  Sum_probs=125.3

Q ss_pred             eeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcE-------EEEEecCCceEEEEEECCCC-CEEEEeeCCCc
Q psy10953          6 KINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETGKL-------EQIFDTRGKFTLSIAYSTDG-HWIASGALDGI   76 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~   76 (181)
                      ++..+...-++++|++.. ..|++++.|++|++||+.....       ...+..|...+..++|++-. ..|++.+.|+.
T Consensus       172 ~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~  251 (422)
T KOG0264|consen  172 RLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGK  251 (422)
T ss_pred             EEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCe
Confidence            555666666789998754 4688999999999999974433       34566778888899999854 67788999999


Q ss_pred             EEEEeCCC----------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC-ceeeeee-cCCcEEEEEEccCCC-E
Q psy10953         77 INIFDANT----------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARR-ENMHTFK-HADQVWCVCVAPDGD-K  142 (181)
Q Consensus        77 v~i~d~~~----------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~v~~~~~sp~g~-~  142 (181)
                      +.+||+++          +|...+.+++|+|.+ ..||+++.|++|++||++.. ++++++. |.+.|..+.|||... .
T Consensus       252 L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etv  331 (422)
T KOG0264|consen  252 LMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETV  331 (422)
T ss_pred             EEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCce
Confidence            99999984          366789999999965 58899999999999999974 4666665 888999999999865 4


Q ss_pred             EEEEcCCCcEEEEeCCC
Q psy10953        143 FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~  159 (181)
                      |++++.|+++.+||+..
T Consensus       332 LASSg~D~rl~vWDls~  348 (422)
T KOG0264|consen  332 LASSGTDRRLNVWDLSR  348 (422)
T ss_pred             eEecccCCcEEEEeccc
Confidence            67788899999999854

>KOG0274|consensus

Probab=99.82  E-value=1.3e-18  Score=139.97  Aligned_cols=150  Identities=18%  Similarity=0.390  Sum_probs=133.5

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      .+..+...||.+++...+..+++|+.|.++++||..+|++...+..|...+.++..  ....+++|+.|.+|++|++.+ 
T Consensus       244 ~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~  321 (537)
T KOG0274|consen  244 RLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGECTHSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNG  321 (537)
T ss_pred             eccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCcEEEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCc
Confidence            37788999999999888899999999999999999999999999988887765554  556788899999999999873 


Q ss_pred             -------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         85 -------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                             +|...|.++.++  +..+++++.|++|++||..+++++.++. |...|+++.+.+. ..+++|+.|+.|++||
T Consensus       322 ~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWd  398 (537)
T KOG0274|consen  322 ACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWD  398 (537)
T ss_pred             ceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeec
Confidence                   488899999887  7899999999999999999999998886 8899999988665 8999999999999999


Q ss_pred             CCCC
Q psy10953        157 YKPE  160 (181)
Q Consensus       157 ~~~~  160 (181)
                      +...
T Consensus       399 l~~~  402 (537)
T KOG0274|consen  399 LRTK  402 (537)
T ss_pred             CCch
Confidence            9887

>KOG0281|consensus

Probab=99.82  E-value=1.2e-19  Score=134.57  Aligned_cols=154  Identities=23%  Similarity=0.423  Sum_probs=127.3

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      ....|+++.+  |...+++|..|.+|++||..+..+...+..|...+.|+.+  |.+.+++|++|.+|.+||.+++    
T Consensus       196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqy--d~rviisGSSDsTvrvWDv~tge~l~  271 (499)
T KOG0281|consen  196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQY--DERVIVSGSSDSTVRVWDVNTGEPLN  271 (499)
T ss_pred             cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeec--cceEEEecCCCceEEEEeccCCchhh
Confidence            3455788777  6778999999999999999999988888888887877766  5679999999999999999875    


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee---ee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH---TF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                          |...|..+.|+.  .++++++.|.++.+||+.....+.   .+ .|...|+.+.|+  .++++++|.|++|++|++
T Consensus       272 tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNvVdfd--~kyIVsASgDRTikvW~~  347 (499)
T KOG0281|consen  272 TLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWST  347 (499)
T ss_pred             HHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheeeeccc--cceEEEecCCceEEEEec
Confidence                556788888754  588999999999999998765332   12 477789988884  669999999999999999


Q ss_pred             CCCeeEEEcCCCCc
Q psy10953        158 KPEEEVEVNGGGGE  171 (181)
Q Consensus       158 ~~~~~~~~~~~~~~  171 (181)
                      .+++-++...|.+.
T Consensus       348 st~efvRtl~gHkR  361 (499)
T KOG0281|consen  348 STCEFVRTLNGHKR  361 (499)
T ss_pred             cceeeehhhhcccc
Confidence            99998887777543

>KOG0294|consensus

Probab=99.82  E-value=1.3e-18  Score=127.24  Aligned_cols=154  Identities=22%  Similarity=0.373  Sum_probs=127.1

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC--EEEEeeCCCcEEE
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH--WIASGALDGIINI   79 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~--~l~~~~~d~~v~i   79 (181)
                      +++...+.+...+.++|.  ++.++|+|+.|.+|++||++..+.+..+..|...+.++.|.+.-.  +|++|+.||.|.+
T Consensus        34 ~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~i  111 (362)
T KOG0294|consen   34 KPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIII  111 (362)
T ss_pred             eccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcceeccccceEEEEecCCcchhheeeecCCCcEEE
Confidence            356667777788888887  799999999999999999999988887777888888999988765  8999999999999


Q ss_pred             EeCC--------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         80 FDAN--------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        80 ~d~~--------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      |+..        ++|...|+.++++|.|++.++.+.|+.++.||+=+++.-...........+.|+|.|.+|+.++.+ .
T Consensus       112 w~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~  190 (362)
T KOG0294|consen  112 WRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-K  190 (362)
T ss_pred             EEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-E
Confidence            9985        468888999999999999999999999999999777654444444445558888888888777654 6


Q ss_pred             EEEEeCC
Q psy10953        152 VHMYSYK  158 (181)
Q Consensus       152 v~i~~~~  158 (181)
                      |-+|.+.
T Consensus       191 i~i~q~d  197 (362)
T KOG0294|consen  191 IDIYQLD  197 (362)
T ss_pred             EEEEecc
Confidence            7777764

>KOG0305|consensus

Probab=99.82  E-value=1.5e-18  Score=136.08  Aligned_cols=153  Identities=22%  Similarity=0.354  Sum_probs=132.6

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      ..++.++.|+++|++|++|..+|.|.+||....+....+.. |...+-+++|.  +..+.+|+.|+.+..+|++.     
T Consensus       217 ~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~~~  294 (484)
T KOG0305|consen  217 EELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQKKTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQHVV  294 (484)
T ss_pred             CCceEEEEECCCCCEEEEeecCCeEEEEehhhccccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchhhh
Confidence            67799999999999999999999999999998888877776 77777788997  67788999999999999863     


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccC-CCEEEEEc--CCCcEEEEe
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPD-GDKFVSVG--EDKAVHMYS  156 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~-g~~l~~~~--~d~~v~i~~  156 (181)
                          +|...|..++|+++++++++|+.|..+.|||.........+ .|...|..++|+|- ...||+|+  .|+.|++|+
T Consensus       295 ~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn  374 (484)
T KOG0305|consen  295 STLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWN  374 (484)
T ss_pred             hhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEE
Confidence                47788999999999999999999999999999776666665 48899999999994 55677766  589999999


Q ss_pred             CCCCeeEEE
Q psy10953        157 YKPEEEVEV  165 (181)
Q Consensus       157 ~~~~~~~~~  165 (181)
                      ..++..+..
T Consensus       375 ~~~g~~i~~  383 (484)
T KOG0305|consen  375 TNTGARIDS  383 (484)
T ss_pred             cCCCcEecc
Confidence            988776643

>KOG1273|consensus

Probab=99.81  E-value=1.2e-18  Score=127.58  Aligned_cols=145  Identities=19%  Similarity=0.344  Sum_probs=126.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      -.++.|++.|.+||+|+.||.|.+||+.|......+..|-..+.+++||+||+.|++++.|..+.+||+..+.       
T Consensus        26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf  105 (405)
T KOG1273|consen   26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRF  105 (405)
T ss_pred             cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEc
Confidence            4689999999999999999999999999999888888898899999999999999999999999999986421       


Q ss_pred             ----------c--------------cc-----------------------EEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q psy10953         87 ----------S--------------SW-----------------------VLSTAFTRDGKFFISASADHTVRVWNFARR  119 (181)
Q Consensus        87 ----------~--------------~~-----------------------v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~  119 (181)
                                .              ..                       ..+..|++.|+++.+|...|.+.++|..+.
T Consensus       106 ~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~  185 (405)
T KOG1273|consen  106 DSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETL  185 (405)
T ss_pred             cCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchh
Confidence                      0              00                       011237888999999999999999999999


Q ss_pred             ceeeeeec--CCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        120 ENMHTFKH--ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       120 ~~~~~~~~--~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +++..++-  ...|-.+.++..|++|+..+.|+.|+.|++.
T Consensus       186 e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~  226 (405)
T KOG1273|consen  186 ECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEIS  226 (405)
T ss_pred             eeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence            88888763  3578899999999999999999999999985

>KOG0268|consensus

Probab=99.81  E-value=2.3e-19  Score=133.26  Aligned_cols=165  Identities=20%  Similarity=0.325  Sum_probs=137.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +++.+.++...+.++.|+|.... |++++.|+.|.+||+++++.++.+...-. ...++|+|.+-.|++++.|..++.||
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mR-TN~IswnPeafnF~~a~ED~nlY~~D  257 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMR-TNTICWNPEAFNFVAANEDHNLYTYD  257 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeecc-ccceecCccccceeeccccccceehh
Confidence            67788888888999999997664 56777999999999999988876654333 34789999888899999999999999


Q ss_pred             CC---------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         82 AN---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        82 ~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      .+         .+|.+.|.++.|||.|+-+++|+.|.+|+||....+.....+.  ....|.++.||-|.+++++||.|+
T Consensus       258 mR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~  337 (433)
T KOG0268|consen  258 MRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDG  337 (433)
T ss_pred             hhhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCc
Confidence            75         4688899999999999999999999999999988765444332  345699999999999999999999


Q ss_pred             cEEEEeCCCCeeEEEcCC
Q psy10953        151 AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~~  168 (181)
                      .|++|.-...+.+.+...
T Consensus       338 nvRlWka~Aseklgv~t~  355 (433)
T KOG0268|consen  338 NVRLWKAKASEKLGVITP  355 (433)
T ss_pred             ceeeeecchhhhcCCCCh
Confidence            999999877666554433

>KOG1539|consensus

Probab=99.81  E-value=5.1e-18  Score=137.06  Aligned_cols=147  Identities=23%  Similarity=0.440  Sum_probs=132.0

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF---DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      ..+.+++.++.|+..+.|...|+|-+|++++|-....+   ..|...+.+++.+.-++.+++++.+|.+.+||..+    
T Consensus       449 ~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l~  528 (910)
T KOG1539|consen  449 INATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVLK  528 (910)
T ss_pred             cceEEEEEeccCceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCccee
Confidence            45788999999999999999999999999999887777   35667788999888889999999999999998541    


Q ss_pred             ---------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q psy10953         85 ---------------------------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR  119 (181)
Q Consensus        85 ---------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~  119 (181)
                                                                   +|...++++.|||||++|++++.|++|++||+.++
T Consensus       529 ~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt~  608 (910)
T KOG1539|consen  529 KSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPTG  608 (910)
T ss_pred             eeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccCc
Confidence                                                         46778999999999999999999999999999999


Q ss_pred             ceeeeeecCCcEEEEEEccCCCEEEEEcCC-CcEEEEeCC
Q psy10953        120 ENMHTFKHADQVWCVCVAPDGDKFVSVGED-KAVHMYSYK  158 (181)
Q Consensus       120 ~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~~v~i~~~~  158 (181)
                      ..+..+....+...+.|||+|.+|++...| +.|++|..+
T Consensus       609 ~lID~~~vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNk  648 (910)
T KOG1539|consen  609 TLIDGLLVDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNK  648 (910)
T ss_pred             ceeeeEecCCcceeeEECCCCCEEEEEEecCceEEEEEch
Confidence            999888888889999999999999999988 789999964

>KOG1446|consensus

Probab=99.81  E-value=9.5e-18  Score=122.53  Aligned_cols=149  Identities=17%  Similarity=0.316  Sum_probs=123.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDAN----   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~----   83 (181)
                      ....+.++.|+++|.++++++.|.++++||..+++....+..+..-+..++|-.....++.++.  |.+|++.++.    
T Consensus        13 ~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLsl~dNky   92 (311)
T KOG1446|consen   13 TNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLSLHDNKY   92 (311)
T ss_pred             CCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEEeecCce
Confidence            3456789999999999999999999999999999999888766443444566555555555554  8899988875    


Q ss_pred             ----CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         84 ----TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        84 ----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                          .||...|+.+..+|-+..+++++.|++|++||++..+++..+...... .+||+|+|-.+|++...+.|++||++.
T Consensus        93 lRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~p-i~AfDp~GLifA~~~~~~~IkLyD~Rs  171 (311)
T KOG1446|consen   93 LRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGLLNLSGRP-IAAFDPEGLIFALANGSELIKLYDLRS  171 (311)
T ss_pred             EEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceEEecCCCc-ceeECCCCcEEEEecCCCeEEEEEecc
Confidence                479999999999999999999999999999999988877776654433 579999999999999888999999864

>KOG0288|consensus

Probab=99.81  E-value=5.5e-19  Score=133.01  Aligned_cols=165  Identities=21%  Similarity=0.296  Sum_probs=127.7

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC--
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA--   82 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~--   82 (181)
                      ..+......+..++|.++++++++++.|+.+++|++...+....+..|.+-+.++.|......+++|+.|.+++.||+  
T Consensus       213 ~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k  292 (459)
T KOG0288|consen  213 STLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQK  292 (459)
T ss_pred             hhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccccceeeccccchhhhhhhhh
Confidence            345555566889999999999999999999999999999888777777766666666554444555666655555554  


Q ss_pred             -------------------------------------CCCC-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy10953         83 -------------------------------------NTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNFAR  118 (181)
Q Consensus        83 -------------------------------------~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~  118 (181)
                                                           +.++       .+.|.++..+++|..+++++.|.++.+.|+++
T Consensus       293 ~~C~kt~l~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt  372 (459)
T KOG0288|consen  293 AYCSKTVLPGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRT  372 (459)
T ss_pred             hheeccccccccccceEecceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeeccc
Confidence                                                 3222       24678899999999999999999999999999


Q ss_pred             Cceeeeeec-----CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        119 RENMHTFKH-----ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       119 ~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      ......+..     ....+.+.|||+++++++||.||.|+||+..++..-.+...+
T Consensus       373 ~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s  428 (459)
T KOG0288|consen  373 KEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLS  428 (459)
T ss_pred             ccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccC
Confidence            887776642     234778999999999999999999999999887654444443

>KOG0646|consensus

Probab=99.81  E-value=1.8e-18  Score=131.86  Aligned_cols=149  Identities=18%  Similarity=0.299  Sum_probs=133.7

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN------   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~------   83 (181)
                      -|..+.+++-+|+|.+|+.|+-.+.|++|.+.+|.++..+..|-..+.++.|+.||.+|++|+.||.|.+|++.      
T Consensus        80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~  159 (476)
T KOG0646|consen   80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSAD  159 (476)
T ss_pred             cccceeeeecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccc
Confidence            35557899999999999999899999999999999998888787778899999999999999999999999863      


Q ss_pred             -----------CCCcccEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         84 -----------TGHSSWVLSTAFTRDG--KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        84 -----------~~~~~~v~~~~~s~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                                 ..|...|+++...+.|  -.++|++.|.++++||+..+..+.++..+..+.+++++|-++.+++|+++|
T Consensus       160 ~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G  239 (476)
T KOG0646|consen  160 NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEG  239 (476)
T ss_pred             cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcc
Confidence                       2467788888877764  478999999999999999999999988888999999999999999999999


Q ss_pred             cEEEEeCC
Q psy10953        151 AVHMYSYK  158 (181)
Q Consensus       151 ~v~i~~~~  158 (181)
                      .|.+.++.
T Consensus       240 ~I~~~~~~  247 (476)
T KOG0646|consen  240 KIFQNLLF  247 (476)
T ss_pred             eEEeeehh
Confidence            99887764

>KOG0308|consensus

Probab=99.80  E-value=3.6e-19  Score=140.41  Aligned_cols=156  Identities=20%  Similarity=0.417  Sum_probs=133.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEE-CCCCCEEEEeeCCCcEEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAY-STDGHWIASGALDGIINIF   80 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~-s~d~~~l~~~~~d~~v~i~   80 (181)
                      +.+++.+..=+.+++...+|+.|++++.|-+|++|+...+.  +...+..|.+.+.++++ .++...+|+|+-|+.|.+|
T Consensus        66 ~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflW  145 (735)
T KOG0308|consen   66 IASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLW  145 (735)
T ss_pred             hhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEE
Confidence            34445555556678888899999999999999999987663  44566678888999998 8888899999999999999


Q ss_pred             eCCC-------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCC
Q psy10953         81 DANT-------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG  140 (181)
Q Consensus        81 d~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g  140 (181)
                      |++.                   ++...|++++.++.|..+++|+.++.+++||.++.+.+..+. |++.|..+.+++||
T Consensus       146 Din~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDG  225 (735)
T KOG0308|consen  146 DINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDG  225 (735)
T ss_pred             EccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCC
Confidence            9873                   345578999999999999999999999999999987666554 99999999999999


Q ss_pred             CEEEEEcCCCcEEEEeCCC
Q psy10953        141 DKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       141 ~~l~~~~~d~~v~i~~~~~  159 (181)
                      +.++++|.|+.|++|++..
T Consensus       226 t~~ls~sSDgtIrlWdLgq  244 (735)
T KOG0308|consen  226 TRLLSASSDGTIRLWDLGQ  244 (735)
T ss_pred             CeEeecCCCceEEeeeccc
Confidence            9999999999999999954

>KOG0772|consensus

Probab=99.80  E-value=5.5e-19  Score=136.38  Aligned_cols=156  Identities=23%  Similarity=0.381  Sum_probs=120.0

Q ss_pred             cCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCC-cEEEEEecC-----CceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          9 VGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETG-KLEQIFDTR-----GKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~-~~~~~~~~~-----~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .+-..+.+-+|+|+.+ .+++++.|+++|+||+... +..+++...     ...+..++|++||++|++|..||.|.+|+
T Consensus       266 GHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~  345 (641)
T KOG0772|consen  266 GHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWD  345 (641)
T ss_pred             CceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeee
Confidence            4556678889999765 5789999999999999744 344555432     12345789999999999999999999999


Q ss_pred             CC-----------CCCcc--cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeeeee---cCCcEEEEEEccCCCEEE
Q psy10953         82 AN-----------TGHSS--WVLSTAFTRDGKFFISASADHTVRVWNFARRE-NMHTFK---HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        82 ~~-----------~~~~~--~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~---~~~~v~~~~~sp~g~~l~  144 (181)
                      ..           ..|..  .|.++.||++|++|++-+.|+++++||++..+ ++....   ...+-+.++|||+.+.|+
T Consensus       346 ~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~kli~  425 (641)
T KOG0772|consen  346 KGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDKLIL  425 (641)
T ss_pred             cCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCceEEE
Confidence            64           24555  79999999999999999999999999999754 333322   333456899999999999


Q ss_pred             EEcC------CCcEEEEeCCCCeeEE
Q psy10953        145 SVGE------DKAVHMYSYKPEEEVE  164 (181)
Q Consensus       145 ~~~~------d~~v~i~~~~~~~~~~  164 (181)
                      +|..      .+.++.|+..+-+.+.
T Consensus       426 TGtS~~~~~~~g~L~f~d~~t~d~v~  451 (641)
T KOG0772|consen  426 TGTSAPNGMTAGTLFFFDRMTLDTVY  451 (641)
T ss_pred             ecccccCCCCCceEEEEeccceeeEE
Confidence            9873      3568888876655543

>KOG0269|consensus

Probab=99.80  E-value=2.9e-19  Score=143.17  Aligned_cols=145  Identities=18%  Similarity=0.402  Sum_probs=120.2

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCC---CcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCCC-----
Q psy10953         16 NVVFSP-DDKYVLSGSQSGKINLYGVET---GKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        16 ~~~~s~-~g~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ++.|+. +.++||+++..|.|.+||+..   .+++..|..|...+.++.|++-. .+|++|+.||.|+.||++..     
T Consensus        92 DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~t  171 (839)
T KOG0269|consen   92 DVKWGQLYSNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKST  171 (839)
T ss_pred             hcccccchhhhheeecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeeccccccc
Confidence            345543 567899999999999999975   56667787788888899998854 67889999999999999743     


Q ss_pred             ---CcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCc-eeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         86 ---HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRE-NMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        86 ---~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~-~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                         ....|++++|+|. +..++++...|.+++||++... ....+ .|.++|.|+.++|++.+||+||.|+.|+||++..
T Consensus       172 ~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~  251 (839)
T KOG0269|consen  172 FRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTD  251 (839)
T ss_pred             ccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccC
Confidence               3346899999996 5688899999999999998754 33334 4899999999999999999999999999999964


Q ss_pred             C
Q psy10953        160 E  160 (181)
Q Consensus       160 ~  160 (181)
                      .
T Consensus       252 ~  252 (839)
T KOG0269|consen  252 S  252 (839)
T ss_pred             C
Confidence            3

>KOG0264|consensus

Probab=99.80  E-value=2.6e-18  Score=130.40  Aligned_cols=155  Identities=17%  Similarity=0.293  Sum_probs=122.4

Q ss_pred             eeeeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC--CcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVET--GKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i   79 (181)
                      ...+..+...+-+++|+|- ...++++++|+.+.+||+++  .+.......|...+.|++|+|-+ ..||+|+.|++|.+
T Consensus       220 ~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~L  299 (422)
T KOG0264|consen  220 KTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVAL  299 (422)
T ss_pred             eEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEE
Confidence            3445566777888999985 45667899999999999994  44445555677778899999954 66788999999999


Q ss_pred             EeCCC---------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCc--------------eeeee-ecCCcEEEE
Q psy10953         80 FDANT---------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRE--------------NMHTF-KHADQVWCV  134 (181)
Q Consensus        80 ~d~~~---------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~--------------~~~~~-~~~~~v~~~  134 (181)
                      ||++.         +|...|..+.|+|+.. .|++++.|+.+.+||+..-.              .+... .|...|...
T Consensus       300 wDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~Df  379 (422)
T KOG0264|consen  300 WDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDF  379 (422)
T ss_pred             eechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccc
Confidence            99973         6788899999999875 78889999999999986411              11111 367789999


Q ss_pred             EEccCCCE-EEEEcCCCcEEEEeCC
Q psy10953        135 CVAPDGDK-FVSVGEDKAVHMYSYK  158 (181)
Q Consensus       135 ~~sp~g~~-l~~~~~d~~v~i~~~~  158 (181)
                      .|+|+.-. |++++.|+.++||.+.
T Consensus       380 sWnp~ePW~I~SvaeDN~LqIW~~s  404 (422)
T KOG0264|consen  380 SWNPNEPWTIASVAEDNILQIWQMA  404 (422)
T ss_pred             cCCCCCCeEEEEecCCceEEEeecc
Confidence            99998665 7778889999999985

>KOG2096|consensus

Probab=99.80  E-value=4.7e-18  Score=124.76  Aligned_cols=150  Identities=26%  Similarity=0.446  Sum_probs=119.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN------   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~------   83 (181)
                      +..++.++-+..++.+|++++.|.+|.+|+++ |+.++.+..........+.||+|+.+++++..--|++|.+-      
T Consensus       186 h~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~  264 (420)
T KOG2096|consen  186 HQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGT  264 (420)
T ss_pred             cccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcc
Confidence            44557778888899999999999999999999 88888887765555678899999999999999999999862      


Q ss_pred             ----------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------------C---------------------
Q psy10953         84 ----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR-------------R---------------------  119 (181)
Q Consensus        84 ----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-------------~---------------------  119 (181)
                                +||...|..++|+++.+.+++.+.||++++||..-             +                     
T Consensus       265 fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~  344 (420)
T KOG2096|consen  265 FQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGD  344 (420)
T ss_pred             hhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCc
Confidence                      47888999999999999999999999999998520             0                     


Q ss_pred             -------ceee-----------eee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        120 -------ENMH-----------TFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       120 -------~~~~-----------~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                             ..+.           .+.  |...|.+++|+|+|+++++++ |+.++++...+|.
T Consensus       345 ~lA~s~gs~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ntpg~  405 (420)
T KOG2096|consen  345 SLAVSFGSDLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIRNTPGW  405 (420)
T ss_pred             EEEeecCCceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeecCCCch
Confidence                   0010           011  345688899999999988887 6778887765553

>KOG0278|consensus

Probab=99.80  E-value=7.2e-19  Score=125.27  Aligned_cols=152  Identities=23%  Similarity=0.371  Sum_probs=132.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKL-EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH------   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~------   86 (181)
                      |..++|+.|.++|++|++++.+|+||++.-+- ...+..+...+..+.|....+.|++.+.|+.|++||.+++.      
T Consensus       103 vk~~af~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~  182 (334)
T KOG0278|consen  103 VKAVAFSQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLE  182 (334)
T ss_pred             eeeEEecccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEe
Confidence            57899999999999999999999999975443 24556677777888888888889999999999999998763      


Q ss_pred             -cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEE
Q psy10953         87 -SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV  165 (181)
Q Consensus        87 -~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~  165 (181)
                       ...|.++-++++|+++. -...+.|++||..+...+..+.-+..|.+.+++|+..++++|+.|..++.||+.+++++..
T Consensus       183 ~~s~VtSlEvs~dG~ilT-ia~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~  261 (334)
T KOG0278|consen  183 FNSPVTSLEVSQDGRILT-IAYGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGS  261 (334)
T ss_pred             cCCCCcceeeccCCCEEE-EecCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEeccCCceeee
Confidence             45688899999999764 4556789999999999999998888999999999999999999999999999999999887


Q ss_pred             c
Q psy10953        166 N  166 (181)
Q Consensus       166 ~  166 (181)
                      .
T Consensus       262 ~  262 (334)
T KOG0278|consen  262 Y  262 (334)
T ss_pred             c
Confidence            4

>KOG1063|consensus

Probab=99.79  E-value=4e-18  Score=135.34  Aligned_cols=156  Identities=21%  Similarity=0.354  Sum_probs=130.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSG-----KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      +..++..+-.++++++.+|+|+++|+++...     .|++|+..+....+.+..|.--+..++|||||++|++.+.|.++
T Consensus       517 Ev~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~  596 (764)
T KOG1063|consen  517 EVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTV  596 (764)
T ss_pred             hhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecCceE
Confidence            4457778888999999999999999998654     59999999888888787787778899999999999999999999


Q ss_pred             EEEeCC------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC--ceeee---eecCCcEEEEEEccC-
Q psy10953         78 NIFDAN------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR--ENMHT---FKHADQVWCVCVAPD-  139 (181)
Q Consensus        78 ~i~d~~------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~--~~~~~---~~~~~~v~~~~~sp~-  139 (181)
                      .+|...            +.|+..|.++.|+|++++++|++.|++|++|.....  +.+..   .++...|+.+++.|- 
T Consensus       597 sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~  676 (764)
T KOG1063|consen  597 SLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVD  676 (764)
T ss_pred             EeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccc
Confidence            999863            347778999999999999999999999999987765  33333   356778888887762 


Q ss_pred             ----CCEEEEEcCCCcEEEEeCC
Q psy10953        140 ----GDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       140 ----g~~l~~~~~d~~v~i~~~~  158 (181)
                          +..+++|-+.|.|.+|+.+
T Consensus       677 ~~e~~~~vavGle~GeI~l~~~~  699 (764)
T KOG1063|consen  677 HNEKGDVVAVGLEKGEIVLWRRK  699 (764)
T ss_pred             cccccceEEEEecccEEEEEecc
Confidence                2256777788999999976

>KOG0294|consensus

Probab=99.79  E-value=2.4e-17  Score=120.63  Aligned_cols=158  Identities=15%  Similarity=0.253  Sum_probs=127.5

Q ss_pred             ceeeeccCeeeEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDK--YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      ++..+-.+...+.++.|.++-.  +|++|++||.|.+|+.....+...+..|...+..++.+|.+++.++.+.|+.+++|
T Consensus        75 qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~W  154 (362)
T KOG0294|consen   75 QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTW  154 (362)
T ss_pred             hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeee
Confidence            5556666777889999998876  89999999999999999999999888888888999999999999999999999999


Q ss_pred             eCCCCCcccE-------EEEEEcCC---------------------------------------CCEEEEEeCCCcEEEE
Q psy10953         81 DANTGHSSWV-------LSTAFTRD---------------------------------------GKFFISASADHTVRVW  114 (181)
Q Consensus        81 d~~~~~~~~v-------~~~~~s~~---------------------------------------~~~l~~~~~d~~i~v~  114 (181)
                      |+..+....+       ..+.|+|.                                       +..|++|..|+.|++|
T Consensus       155 NLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~~i~i~q~d~A~v~~~i~~~~r~l~~~~l~~~~L~vG~d~~~i~~~  234 (362)
T KOG0294|consen  155 NLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRNKIDIYQLDNASVFREIENPKRILCATFLDGSELLVGGDNEWISLK  234 (362)
T ss_pred             hhhcCccceeeccCCcceeeEEcCCCCEEEEEeccEEEEEecccHhHhhhhhccccceeeeecCCceEEEecCCceEEEe
Confidence            9865422111       11333333                                       3445678888899999


Q ss_pred             ecCCCceeeeee-cCCcEEEEEE--ccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        115 NFARRENMHTFK-HADQVWCVCV--APDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       115 d~~~~~~~~~~~-~~~~v~~~~~--sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      |..+..+...+. |+.+|-++.+  .|++.+|+++|.||.|++|++...
T Consensus       235 D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~  283 (362)
T KOG0294|consen  235 DTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME  283 (362)
T ss_pred             ccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence            988877777775 8888888763  577889999999999999998765

>KOG4283|consensus

Probab=99.79  E-value=5.2e-18  Score=123.42  Aligned_cols=156  Identities=21%  Similarity=0.322  Sum_probs=125.5

Q ss_pred             ccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC---CEEEEeeCCCcEEEEeCC
Q psy10953          8 NVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG---HWIASGALDGIINIFDAN   83 (181)
Q Consensus         8 ~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~---~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+...+..+.|-| |...+.+++.|+++++||+.+-+....|..++. +++-++||-.   .++++|..+-.|++.|+.
T Consensus        98 ~~Hky~iss~~WyP~DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~~-VYshamSp~a~sHcLiA~gtr~~~VrLCDi~  176 (397)
T KOG4283|consen   98 NGHKYAISSAIWYPIDTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEGK-VYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA  176 (397)
T ss_pred             ccceeeeeeeEEeeecCceeecccccceEEEeecccceeeEEeecCce-eehhhcChhhhcceEEEEecCCCcEEEEecc
Confidence            34666678888888 555677899999999999999988887776555 5677777743   467778889999999997


Q ss_pred             C--------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC-ceee---------------eeecCCcEEEEEEcc
Q psy10953         84 T--------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARR-ENMH---------------TFKHADQVWCVCVAP  138 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~-~~~~---------------~~~~~~~v~~~~~sp  138 (181)
                      .        +|...|.++.|+|..+ .|++++.||.|++||++.- .++.               ...|.+.+.++||+.
T Consensus       177 SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tS  256 (397)
T KOG4283|consen  177 SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTS  256 (397)
T ss_pred             CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecc
Confidence            4        5788899999999988 5789999999999999753 1111               112567899999999


Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        139 DGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      +|+++++++.|.++++|+...|+...
T Consensus       257 d~~~l~~~gtd~r~r~wn~~~G~ntl  282 (397)
T KOG4283|consen  257 DARYLASCGTDDRIRVWNMESGRNTL  282 (397)
T ss_pred             cchhhhhccCccceEEeecccCcccc
Confidence            99999999999999999998776543

>KOG0299|consensus

Probab=99.79  E-value=1e-17  Score=127.55  Aligned_cols=159  Identities=17%  Similarity=0.307  Sum_probs=133.4

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      .+-..+.+++.|+||++|++|+.|..|.+|+.++.+.++.+..|...+.+++|-..-..+++++.|+.+++|++..    
T Consensus       200 ~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~v  279 (479)
T KOG0299|consen  200 GHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYV  279 (479)
T ss_pred             cccceeEEEEEcCCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHH
Confidence            4556789999999999999999999999999999999988888888888999988778899999999999999863    


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                          +|...|.++.-..-++.+-+++.|+++++|.+.....+.-..+.+.+-|++|-.+ ..|++||.+|.|.+|++...
T Consensus       280 etlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~In~-~HfvsGSdnG~IaLWs~~KK  358 (479)
T KOG0299|consen  280 ETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFIND-EHFVSGSDNGSIALWSLLKK  358 (479)
T ss_pred             HHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEecc-cceeeccCCceEEEeeeccc
Confidence                6888888887777777777777999999999965544444456778989998755 57889999999999999888


Q ss_pred             eeEEEcCC
Q psy10953        161 EEVEVNGG  168 (181)
Q Consensus       161 ~~~~~~~~  168 (181)
                      .++-+..-
T Consensus       359 kplf~~~~  366 (479)
T KOG0299|consen  359 KPLFTSRL  366 (479)
T ss_pred             CceeEeec
Confidence            77654433

>KOG1036|consensus

Probab=99.79  E-value=2.1e-17  Score=120.49  Aligned_cols=146  Identities=28%  Similarity=0.487  Sum_probs=124.7

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      ++..++++.|+|.++.|++++.||++++||+....+...+. ++.++.+++|.+ ...+++|+-||.|+.+|+.++    
T Consensus        12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~~~   89 (323)
T KOG1036|consen   12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNEDQ   89 (323)
T ss_pred             ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccC-CceEEEeccCceEEEEEecCCccee
Confidence            45568999999999999999999999999999887777765 455577889987 456889999999999999864    


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                         |...+.++.+++-...+++|+-|++|++||.+.......+...+.|.++..  .|+.|++|+.+..|.+||++.
T Consensus        90 igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   90 IGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEccc
Confidence               667899999999888899999999999999998666666666778988865  578899999999999999865

>KOG0308|consensus

Probab=99.78  E-value=8.9e-18  Score=132.62  Aligned_cols=156  Identities=26%  Similarity=0.425  Sum_probs=135.2

Q ss_pred             eeeeccCeeeEEEEEE-cCCCCEEEEEeCCCcEEEEeCCCC--cEEEEEe---------cCCceEEEEEECCCCCEEEEe
Q psy10953          4 ISKINVGPVDMWNVVF-SPDDKYVLSGSQSGKINLYGVETG--KLEQIFD---------TRGKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~-s~~g~~l~~~~~d~~i~~~d~~~~--~~~~~~~---------~~~~~~~~~~~s~d~~~l~~~   71 (181)
                      +..+..+.-+|.+++. .++..++|+|+.|+.|.+||+.++  ++...+.         .+...+++++..+.|..+++|
T Consensus       110 ~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsG  189 (735)
T KOG0308|consen  110 MSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSG  189 (735)
T ss_pred             HhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEec
Confidence            4456678888999999 888899999999999999999977  2222221         234567889999999899999


Q ss_pred             eCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCE
Q psy10953         72 ALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK  142 (181)
Q Consensus        72 ~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~  142 (181)
                      +..+.+++||.++        +|+.-|..+-.++||+.+++++.||+|++||+..++++.++. |...||++..+|+=..
T Consensus       190 gtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~  269 (735)
T KOG0308|consen  190 GTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTH  269 (735)
T ss_pred             CcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcce
Confidence            9999999999874        678889999999999999999999999999999999999987 7778999999999999


Q ss_pred             EEEEcCCCcEEEEeCCC
Q psy10953        143 FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~  159 (181)
                      +++|+.|+.|..=++..
T Consensus       270 vYsG~rd~~i~~Tdl~n  286 (735)
T KOG0308|consen  270 VYSGGRDGNIYRTDLRN  286 (735)
T ss_pred             EEecCCCCcEEecccCC
Confidence            99999999999888866

>KOG0639|consensus

Probab=99.78  E-value=1.5e-18  Score=133.78  Aligned_cols=146  Identities=25%  Similarity=0.405  Sum_probs=131.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG------   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~------   85 (181)
                      ..++.++++||.+..++++.||.|.+||+.+..+++.|+.|.+-..|+.+++||..|-+|+-|++|+-||++.+      
T Consensus       510 paCyALa~spDakvcFsccsdGnI~vwDLhnq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqh  589 (705)
T KOG0639|consen  510 PACYALAISPDAKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQH  589 (705)
T ss_pred             hhhhhhhcCCccceeeeeccCCcEEEEEcccceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhh
Confidence            45788999999999999999999999999999999999998887789999999999999999999999998631      


Q ss_pred             ------------------------------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q psy10953         86 ------------------------------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH  123 (181)
Q Consensus        86 ------------------------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~  123 (181)
                                                                |.+.|.++.|.+.|+++++.+.|..+..|...-+..+.
T Consensus       590 dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiF  669 (705)
T KOG0639|consen  590 DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIF  669 (705)
T ss_pred             hhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhhhccCcccccee
Confidence                                                      33457889999999999999999999999888888887


Q ss_pred             eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953        124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       124 ~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      +.+....|.++.+|-|.++|++|+.|+...+|.+
T Consensus       670 qskE~SsVlsCDIS~ddkyIVTGSGdkkATVYeV  703 (705)
T KOG0639|consen  670 QSKESSSVLSCDISFDDKYIVTGSGDKKATVYEV  703 (705)
T ss_pred             eccccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence            8788889999999999999999999998888864

>KOG0274|consensus

Probab=99.78  E-value=1.7e-17  Score=133.45  Aligned_cols=159  Identities=18%  Similarity=0.347  Sum_probs=132.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.++.+  .+.++++|+.|.+|++|++++++.+.++..|...|.++..+  +..+++|+.|++|.+||+.
T Consensus       284 ~~~l~gh~stv~~~~~--~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~  359 (537)
T KOG0274|consen  284 THSLQGHTSSVRCLTI--DPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPR  359 (537)
T ss_pred             EEEecCCCceEEEEEc--cCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhh
Confidence            3344555565666555  55678889999999999999999999998788888888886  8889999999999999986


Q ss_pred             --------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeeec-CCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 --------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFKH-ADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 --------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~-~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                              ++|..+|.++.+.+. ..+++|+.|+.|++||+.+. +++..+.+ ..-+.++  ...++++++++.|+.|+
T Consensus       360 ~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~~v~~l--~~~~~~Lvs~~aD~~Ik  436 (537)
T KOG0274|consen  360 TGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTSLVSSL--LLRDNFLVSSSADGTIK  436 (537)
T ss_pred             hceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCCccccccc--ccccceeEeccccccEE
Confidence                    468899999987776 88999999999999999999 88888874 4445444  45788999999999999


Q ss_pred             EEeCCCCeeEEEcCCC
Q psy10953        154 MYSYKPEEEVEVNGGG  169 (181)
Q Consensus       154 i~~~~~~~~~~~~~~~  169 (181)
                      +||..+++.++...+.
T Consensus       437 ~WD~~~~~~~~~~~~~  452 (537)
T KOG0274|consen  437 LWDAEEGECLRTLEGR  452 (537)
T ss_pred             EeecccCceeeeeccC
Confidence            9999999888777663

>KOG2096|consensus

Probab=99.78  E-value=1.2e-17  Score=122.63  Aligned_cols=152  Identities=19%  Similarity=0.304  Sum_probs=106.5

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEE--ecCCceEEEEEECCC------------------
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE--QIF--DTRGKFTLSIAYSTD------------------   64 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~--~~~--~~~~~~~~~~~~s~d------------------   64 (181)
                      +-.+...+.+++||.||++|++++.|++|++|++++-...  +.+  ..+-+....+.|+||                  
T Consensus        82 LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~vyk  161 (420)
T KOG2096|consen   82 LKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCVYK  161 (420)
T ss_pred             hhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEEEE
Confidence            4456777999999999999999999999999998753211  000  000001112333333                  


Q ss_pred             -------------------------------------CCEEEEeeCCCcEEEEeCCCCC-------cccEEEEEEcCCCC
Q psy10953         65 -------------------------------------GHWIASGALDGIINIFDANTGH-------SSWVLSTAFTRDGK  100 (181)
Q Consensus        65 -------------------------------------~~~l~~~~~d~~v~i~d~~~~~-------~~~v~~~~~s~~~~  100 (181)
                                                           +++|.+++.|..|.+|+++..-       ...-..++.||+|+
T Consensus       162 ~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~~idtnq~~n~~aavSP~GR  241 (420)
T KOG2096|consen  162 LVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQSIDTNQSSNYDAAVSPDGR  241 (420)
T ss_pred             eeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecCCceeeeeccccccccceeeCCCCc
Confidence                                                 3455566666777777776321       12234578899999


Q ss_pred             EEEEEeCCCcEEEEecC---CCc-----eeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        101 FFISASADHTVRVWNFA---RRE-----NMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       101 ~l~~~~~d~~i~v~d~~---~~~-----~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      ++++++..-.+++|..-   .+.     ...++ .|...|..+||||+.+.+++.|.||.+++||.+
T Consensus       242 Fia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd  308 (420)
T KOG2096|consen  242 FIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD  308 (420)
T ss_pred             EEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence            99999999999999852   221     22233 378889999999999999999999999999974

>KOG0299|consensus

Probab=99.77  E-value=1.1e-17  Score=127.47  Aligned_cols=166  Identities=33%  Similarity=0.468  Sum_probs=135.6

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE-EEEe-----------------cCCceEEEEEECCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE-QIFD-----------------TRGKFTLSIAYSTDG   65 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~-~~~~-----------------~~~~~~~~~~~s~d~   65 (181)
                      ++.+-.+...+.+++++||+++.++++.|++|.=|++.+++.. ..+.                 .|...+.+++.|+||
T Consensus       135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg  214 (479)
T KOG0299|consen  135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG  214 (479)
T ss_pred             ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence            4455667788899999999999999999999999999888743 1111                 223456789999999


Q ss_pred             CEEEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEE
Q psy10953         66 HWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCV  136 (181)
Q Consensus        66 ~~l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~  136 (181)
                      ++|++|+.|..+.||+..+        +|...|.+++|-..-..+.+++.|..+++|++.....+.++ .|++.|.++..
T Consensus       215 kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Ida  294 (479)
T KOG0299|consen  215 KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGIDA  294 (479)
T ss_pred             cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeech
Confidence            9999999999999999863        67888999999888788899999999999999877655554 58999999988


Q ss_pred             ccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCC
Q psy10953        137 APDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGG  170 (181)
Q Consensus       137 sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~  170 (181)
                      ..-++.+.+|+.|+++++|.+. .+...+..++.
T Consensus       295 L~reR~vtVGgrDrT~rlwKi~-eesqlifrg~~  327 (479)
T KOG0299|consen  295 LSRERCVTVGGRDRTVRLWKIP-EESQLIFRGGE  327 (479)
T ss_pred             hcccceEEeccccceeEEEecc-ccceeeeeCCC
Confidence            8888888888899999999994 44444555554

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.77  E-value=2.7e-16  Score=118.15  Aligned_cols=155  Identities=16%  Similarity=0.222  Sum_probs=117.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCcc---
Q psy10953         14 MWNVVFSPDDKYVLSGSQSG-KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGHSS---   88 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~~~---   88 (181)
                      +..++|+|+|++++++..++ .+.+||.++++.......... ...+.|+|++++|+++ ..++.+++||+.++...   
T Consensus       117 ~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~  195 (300)
T TIGR03866       117 PEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQR-PRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKI  195 (300)
T ss_pred             cceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCC-ccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeee
Confidence            56799999999999888765 467789988877654433223 3478999999988654 56899999999764210   


Q ss_pred             ------------cEEEEEEcCCCCEEEE-EeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEE
Q psy10953         89 ------------WVLSTAFTRDGKFFIS-ASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHM  154 (181)
Q Consensus        89 ------------~v~~~~~s~~~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i  154 (181)
                                  ....+.|+|++++++. ...++.+.+||..+++......+...+++++|+|+|++|++++ .++.|.+
T Consensus       196 ~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v  275 (300)
T TIGR03866       196 TFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSV  275 (300)
T ss_pred             eecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEeCCCcceEEECCCCCEEEEEcCCCCeEEE
Confidence                        1235789999997544 3456689999998887766555566799999999999998865 5899999


Q ss_pred             EeCCCCeeEEEcCCC
Q psy10953        155 YSYKPEEEVEVNGGG  169 (181)
Q Consensus       155 ~~~~~~~~~~~~~~~  169 (181)
                      ||+.+++.+.....+
T Consensus       276 ~d~~~~~~~~~~~~~  290 (300)
T TIGR03866       276 IDVAALKVIKSIKVG  290 (300)
T ss_pred             EECCCCcEEEEEEcc
Confidence            999998876544433

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0288|consensus

Probab=99.77  E-value=2.3e-17  Score=124.33  Aligned_cols=140  Identities=21%  Similarity=0.342  Sum_probs=118.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      +.+|..+  +..+++|..|++|++||.++..........+ .+.++..+++|..+.+.+.|.++.+.|+++..       
T Consensus       305 cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA  381 (459)
T KOG0288|consen  305 CNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSA  381 (459)
T ss_pred             ccceEec--ceeeeecccccceEEEeccCCceeeEeecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeec
Confidence            3444443  6678899999999999999999888887766 46799999999999999999999999997532       


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCC-cEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HAD-QVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~-~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                           ....+.+.|||++.|+++|+.||.|+||+..++++.....  +.. .|++++|+|.|..+++++.++.+.+|.
T Consensus       382 ~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~  459 (459)
T KOG0288|consen  382 EGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT  459 (459)
T ss_pred             cccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence                 1235678999999999999999999999999998776664  222 699999999999999999999999994

>KOG1407|consensus

Probab=99.77  E-value=4.8e-17  Score=116.47  Aligned_cols=140  Identities=16%  Similarity=0.296  Sum_probs=123.6

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN------   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~------   83 (181)
                      .+..+..++|+-++..++..+.-|+|.+.....-+.++.+..|.....|+.|+|+|++|++|+.|..+.+||+.      
T Consensus       146 ~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R  225 (313)
T KOG1407|consen  146 FKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICER  225 (313)
T ss_pred             ccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhhe
Confidence            44456778899888888877778999999988778888888887777799999999999999999999999985      


Q ss_pred             --CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC
Q psy10953         84 --TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        84 --~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                        +.+.-+|+.+.||.+|++|++++.|..|-|=+..++..+..+++.++-..++|+|....|+-++.|
T Consensus       226 ~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~~~~~t~tVAWHPk~~LLAyA~dd  293 (313)
T KOG1407|consen  226 CISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIPCEGPTFTVAWHPKRPLLAYACDD  293 (313)
T ss_pred             eeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEeeccCCceeEEecCCCceeeEEecC
Confidence              345567999999999999999999999999999999999999999999999999999888877754

>KOG0300|consensus

Probab=99.77  E-value=2.3e-17  Score=121.28  Aligned_cols=157  Identities=17%  Similarity=0.289  Sum_probs=138.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..++.+..-+.++.|-..|+.+++++.|.+..+||++++..++.+..|.....-++-+|..+++++.+.|.+.++||.
T Consensus       264 Pl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDF  343 (481)
T KOG0300|consen  264 PLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDF  343 (481)
T ss_pred             eeeeeeccccceEehhhhcCcceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccc
Confidence            57788888888999999999999999999999999999999999999888776666777899999999999999999997


Q ss_pred             C---------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeeecCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         83 N---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        83 ~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      +         .||...|+++.|..+.+ +++++.|.+|++||+++- .++.++....+++.++++..+..|+.--.++.|
T Consensus       344 ReaI~sV~VFQGHtdtVTS~vF~~dd~-vVSgSDDrTvKvWdLrNMRsplATIRtdS~~NRvavs~g~~iIAiPhDNRqv  422 (481)
T KOG0300|consen  344 REAIQSVAVFQGHTDTVTSVVFNTDDR-VVSGSDDRTVKVWDLRNMRSPLATIRTDSPANRVAVSKGHPIIAIPHDNRQV  422 (481)
T ss_pred             hhhcceeeeecccccceeEEEEecCCc-eeecCCCceEEEeeeccccCcceeeecCCccceeEeecCCceEEeccCCceE
Confidence            6         47888999999988755 679999999999999874 567778877889999999988889988888999


Q ss_pred             EEEeCCCC
Q psy10953        153 HMYSYKPE  160 (181)
Q Consensus       153 ~i~~~~~~  160 (181)
                      ++||+...
T Consensus       423 RlfDlnG~  430 (481)
T KOG0300|consen  423 RLFDLNGN  430 (481)
T ss_pred             EEEecCCC
Confidence            99999643

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.76  E-value=4.2e-16  Score=111.04  Aligned_cols=148  Identities=18%  Similarity=0.387  Sum_probs=108.6

Q ss_pred             EEEEEEcCCCCEEEEEeC---C-------CcEEEEeC--CCCcEEEEEec-CCceEEEEEECCCCCEEEE--eeCCCcEE
Q psy10953         14 MWNVVFSPDDKYVLSGSQ---S-------GKINLYGV--ETGKLEQIFDT-RGKFTLSIAYSTDGHWIAS--GALDGIIN   78 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~---d-------~~i~~~d~--~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~--~~~d~~v~   78 (181)
                      -..+.|+|+|.+|+.-..   |       +...+|.+  .... ...+.. ....+.+++|+|+|+.|++  |..++.+.
T Consensus         8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~-~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~   86 (194)
T PF08662_consen    8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIP-VESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVT   86 (194)
T ss_pred             eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCc-cceeeccCCCceEEEEECcCCCEEEEEEccCCcccE
Confidence            356889999998864333   1       23445544  3333 333332 2334789999999998765  44677999


Q ss_pred             EEeCCCC-----CcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC--
Q psy10953         79 IFDANTG-----HSSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE--  148 (181)
Q Consensus        79 i~d~~~~-----~~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~--  148 (181)
                      +||++..     ....++.+.|+|+|+++++++.+   |.+.+||..+.+.+....+.. +..++|||||++++++..  
T Consensus        87 lyd~~~~~i~~~~~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~-~t~~~WsPdGr~~~ta~t~~  165 (194)
T PF08662_consen   87 LYDVKGKKIFSFGTQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD-ATDVEWSPDGRYLATATTSP  165 (194)
T ss_pred             EEcCcccEeEeecCCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc-EEEEEEcCCCCEEEEEEecc
Confidence            9998632     24467789999999999998754   679999999888888877764 679999999999998774  


Q ss_pred             ----CCcEEEEeCCCCeeEE
Q psy10953        149 ----DKAVHMYSYKPEEEVE  164 (181)
Q Consensus       149 ----d~~v~i~~~~~~~~~~  164 (181)
                          |+.++||++. |..+.
T Consensus       166 r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  166 RLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             ceeccccEEEEEec-CeEeE
Confidence                7889999995 55543

>KOG2055|consensus

Probab=99.76  E-value=5.4e-17  Score=123.85  Aligned_cols=147  Identities=22%  Similarity=0.408  Sum_probs=123.7

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEECCCCCEEEEeeCCCcEEEEeCCCCC----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF-TLSIAYSTDGHWIASGALDGIINIFDANTGH----   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~----   86 (181)
                      ..+.++.|+.|++.|++++.+|.|.+||++...+++.+...+.. -.+++.|++|.+||+|+..|.|-|||.++..    
T Consensus       345 G~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~s~~  424 (514)
T KOG2055|consen  345 GVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFASTN  424 (514)
T ss_pred             cEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchhhccCC
Confidence            34789999999999999999999999999999999888765542 3467889999999999999999999975421    


Q ss_pred             ----------cccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCceeeeeec----CCcEEEEEEccCCCEEEEEcCCC
Q psy10953         87 ----------SSWVLSTAFTRDGKFFISASA--DHTVRVWNFARRENMHTFKH----ADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        87 ----------~~~v~~~~~s~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~----~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                                ...|..++|+|+++.|+.++.  ...+++.-+.+...+..++.    -+.++|++|||.+.+++.|-..+
T Consensus       425 PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP~~n~~vg~vtc~aFSP~sG~lAvGNe~g  504 (514)
T KOG2055|consen  425 PKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFPTSNTKVGHVTCMAFSPNSGYLAVGNEAG  504 (514)
T ss_pred             CCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCCCCCCcccceEEEEecCCCceEEeecCCC
Confidence                      235889999999999887774  56789888887776666652    34699999999999999999999


Q ss_pred             cEEEEeCC
Q psy10953        151 AVHMYSYK  158 (181)
Q Consensus       151 ~v~i~~~~  158 (181)
                      ++.+|.+.
T Consensus       505 rv~l~kL~  512 (514)
T KOG2055|consen  505 RVHLFKLH  512 (514)
T ss_pred             ceeeEeec
Confidence            99999875

>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein

Probab=99.76  E-value=7.1e-16  Score=115.86  Aligned_cols=150  Identities=15%  Similarity=0.186  Sum_probs=115.9

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCC-----
Q psy10953         14 MWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGH-----   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~-----   86 (181)
                      +..++|+|+|+.+ ++++.++.|++||..+++....+..+.. ...+.++|+++.++++ ..++.+++||+.+..     
T Consensus        33 ~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~  111 (300)
T TIGR03866        33 PRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPD-PELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI  111 (300)
T ss_pred             CCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCC-ccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe
Confidence            5679999999987 5667889999999999888776654333 3468899999977654 568999999997532     


Q ss_pred             --cccEEEEEEcCCCCEEEEEeCCC-cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCee
Q psy10953         87 --SSWVLSTAFTRDGKFFISASADH-TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKPEEE  162 (181)
Q Consensus        87 --~~~v~~~~~s~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~~~~  162 (181)
                        ...+..++|+|+|++++++..++ .+.+||..+++..........+.+++|+|+|+.+++++ .++.|++|++.+++.
T Consensus       112 ~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~  191 (300)
T TIGR03866       112 PVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKV  191 (300)
T ss_pred             eCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCccee
Confidence              22357789999999998888765 46788988877665554445567899999999886555 589999999988765


Q ss_pred             EE
Q psy10953        163 VE  164 (181)
Q Consensus       163 ~~  164 (181)
                      +.
T Consensus       192 ~~  193 (300)
T TIGR03866       192 IK  193 (300)
T ss_pred             ee
Confidence            43

Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.

>KOG0301|consensus

Probab=99.75  E-value=6.4e-17  Score=128.57  Aligned_cols=147  Identities=24%  Similarity=0.473  Sum_probs=119.8

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--   83 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--   83 (181)
                      .++.++..||.+++-|++ .++||+.|++|++|.-  ++.++.|..|.+.++.+++-+++. |++++.||.|+.|++.  
T Consensus       135 ~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~--~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge  210 (745)
T KOG0301|consen  135 SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG--GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGE  210 (745)
T ss_pred             ccCCcchheeeeeecCCC-cEEeccCcceeeeccC--CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCc
Confidence            467788889999888888 6779999999999963  777888888888888888876644 8889999999999984  


Q ss_pred             -----CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-cEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         84 -----TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD-QVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        84 -----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                           -+|.+.+.++...++++.+++++.|+++++|+-.  .+...+.++. .+|++.+-++|. +++|+.||.|++|..
T Consensus       211 ~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~  287 (745)
T KOG0301|consen  211 VLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTV  287 (745)
T ss_pred             eeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEe
Confidence                 3688888888888888899999999999999865  5666677665 799988888875 455777999999987


Q ss_pred             CC
Q psy10953        158 KP  159 (181)
Q Consensus       158 ~~  159 (181)
                      ..
T Consensus       288 ~k  289 (745)
T KOG0301|consen  288 DK  289 (745)
T ss_pred             cc
Confidence            53

>KOG1332|consensus

Probab=99.75  E-value=3.6e-17  Score=116.15  Aligned_cols=149  Identities=23%  Similarity=0.323  Sum_probs=120.4

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEEeCCC--
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK---LEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      .-+.++.+..-|++|||++.|++|++|.++.+.   ++..+..|..++..+.|..  -|..|++++.||.|.+|.-..  
T Consensus        12 D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~   91 (299)
T KOG1332|consen   12 DMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGR   91 (299)
T ss_pred             hhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCc
Confidence            334566667789999999999999999997554   4456667777788888855  799999999999999998754  


Q ss_pred             --------CCcccEEEEEEcCCC--CEEEEEeCCCcEEEEecCCC-c-eeee--eecCCcEEEEEEccC---C-------
Q psy10953         85 --------GHSSWVLSTAFTRDG--KFFISASADHTVRVWNFARR-E-NMHT--FKHADQVWCVCVAPD---G-------  140 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~--~~l~~~~~d~~i~v~d~~~~-~-~~~~--~~~~~~v~~~~~sp~---g-------  140 (181)
                              .|...|++++|-|.+  -.|++++.||+|.+.+++.. . ....  .-|+-.++++++.|-   |       
T Consensus        92 w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~  171 (299)
T KOG1332|consen   92 WTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGP  171 (299)
T ss_pred             hhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCc
Confidence                    477889999999984  58999999999999998764 1 1122  237778999999886   5       


Q ss_pred             ----CEEEEEcCCCcEEEEeCCCC
Q psy10953        141 ----DKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       141 ----~~l~~~~~d~~v~i~~~~~~  160 (181)
                          ++|++|+.|+.|+||....+
T Consensus       172 ~~~~krlvSgGcDn~VkiW~~~~~  195 (299)
T KOG1332|consen  172 AAKVKRLVSGGCDNLVKIWKFDSD  195 (299)
T ss_pred             ccccceeeccCCccceeeeecCCc
Confidence                67999999999999999764

>KOG0313|consensus

Probab=99.75  E-value=7.1e-17  Score=120.64  Aligned_cols=156  Identities=19%  Similarity=0.323  Sum_probs=127.5

Q ss_pred             eeeeccCeeeEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCcEE----EEEecCCceEEEEEECCCCCEEEEeeCCCc
Q psy10953          4 ISKINVGPVDMWNVVFSPD---DKYVLSGSQSGKINLYGVETGKLE----QIFDTRGKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~---g~~l~~~~~d~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      +..+..+...+.+++|--.   ...+++++.|.++++|..+.+...    ..-..|...+.+++..++|..+++|+.|.+
T Consensus       137 ~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sgtr~~SgS~D~~  216 (423)
T KOG0313|consen  137 IKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSGTRFCSGSWDTM  216 (423)
T ss_pred             EEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCCCeEEeecccce
Confidence            4444555555666666432   235999999999999988766543    222357777889999999999999999999


Q ss_pred             EEEEeCC---------------------------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee
Q psy10953         77 INIFDAN---------------------------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH  123 (181)
Q Consensus        77 v~i~d~~---------------------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~  123 (181)
                      +.+|+..                                 .+|...|.++.|++ ...+.+++.|++|+.||+.++....
T Consensus       217 lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~~~  295 (423)
T KOG0313|consen  217 LKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGLKS  295 (423)
T ss_pred             eeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeeccccee
Confidence            9999831                                 14777899999998 6778899999999999999999888


Q ss_pred             eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       124 ~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ++.-...+.++..+|..++|++|+.|..+++||-+.+
T Consensus       296 ~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~  332 (423)
T KOG0313|consen  296 TLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTG  332 (423)
T ss_pred             eeecCcceeEeecccccceeeecCCCCceeecCCCCC
Confidence            8877788999999999999999999999999998765

>KOG0646|consensus

Probab=99.75  E-value=9.2e-17  Score=122.61  Aligned_cols=156  Identities=15%  Similarity=0.252  Sum_probs=124.9

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcEEEEEecCCceEEEEEECCC--CCEEEEeeCCCc
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE---------TGKLEQIFDTRGKFTLSIAYSTD--GHWIASGALDGI   76 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~---------~~~~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~   76 (181)
                      ..+=..+.++.|+-||.++++|+.||.|.+|.+.         +-+....|..|.-.+.++...+-  ..++++++.|.+
T Consensus       120 ~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t  199 (476)
T KOG0646|consen  120 SAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRT  199 (476)
T ss_pred             HhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCce
Confidence            3445568999999999999999999999999762         22445677777777777776654  367999999999


Q ss_pred             EEEEeCCCCC-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc----------------eeeee-ecCC--c
Q psy10953         77 INIFDANTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRE----------------NMHTF-KHAD--Q  130 (181)
Q Consensus        77 v~i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~----------------~~~~~-~~~~--~  130 (181)
                      +++||+..+.       ...+.+++++|.++.+..|+.+|.|.+.++....                .+..+ .|.+  .
T Consensus       200 ~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~  279 (476)
T KOG0646|consen  200 IKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESA  279 (476)
T ss_pred             EEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcc
Confidence            9999998763       4567899999999999999999999999875322                11112 2555  8


Q ss_pred             EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        131 VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       131 v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      |+|++++-||..|++|+.||.|++|++...+-+
T Consensus       280 ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~i  312 (476)
T KOG0646|consen  280 ITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCI  312 (476)
T ss_pred             eeEEEEecCccEEEeeCCCCCEEEEecchHHHH
Confidence            999999999999999999999999998765443

>KOG1332|consensus

Probab=99.75  E-value=3.1e-17  Score=116.50  Aligned_cols=157  Identities=22%  Similarity=0.371  Sum_probs=128.1

Q ss_pred             cceeeeccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEECCC--CCEEEEeeCCC
Q psy10953          2 KQISKINVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGKLEQ--IFDTRGKFTLSIAYSTD--GHWIASGALDG   75 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~d--~~~l~~~~~d~   75 (181)
                      +.|..+..+..++|.++|..  -|.+||+++.||+|.+|.-.+++..+  .+..|...+.+++|.|.  |-.|++++.||
T Consensus        47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG  126 (299)
T KOG1332|consen   47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDG  126 (299)
T ss_pred             eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCC
Confidence            35778888999999999986  89999999999999999988886543  33446666778888886  56889999999


Q ss_pred             cEEEEeCCC-----------CCcccEEEEEEcCC---C-----------CEEEEEeCCCcEEEEecCCCc--eeeee-ec
Q psy10953         76 IINIFDANT-----------GHSSWVLSTAFTRD---G-----------KFFISASADHTVRVWNFARRE--NMHTF-KH  127 (181)
Q Consensus        76 ~v~i~d~~~-----------~~~~~v~~~~~s~~---~-----------~~l~~~~~d~~i~v~d~~~~~--~~~~~-~~  127 (181)
                      .|.+.+.+.           .|.-.|+++.|.|.   |           +.|++++.|..|+||....+.  .-+++ .|
T Consensus       127 ~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H  206 (299)
T KOG1332|consen  127 KVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH  206 (299)
T ss_pred             cEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc
Confidence            999998753           36667889999986   4           569999999999999988753  22223 38


Q ss_pred             CCcEEEEEEccCC----CEEEEEcCCCcEEEEeCC
Q psy10953        128 ADQVWCVCVAPDG----DKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       128 ~~~v~~~~~sp~g----~~l~~~~~d~~v~i~~~~  158 (181)
                      .+-|+.+++.|.-    ..|+++|.|+.|.||...
T Consensus       207 ~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~  241 (299)
T KOG1332|consen  207 KDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD  241 (299)
T ss_pred             chhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence            8889999999864    479999999999999975

>KOG0270|consensus

Probab=99.75  E-value=1.4e-16  Score=121.09  Aligned_cols=147  Identities=20%  Similarity=0.344  Sum_probs=122.2

Q ss_pred             EEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCCCC-C------
Q psy10953         16 NVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDANTG-H------   86 (181)
Q Consensus        16 ~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~~~-~------   86 (181)
                      .++|.-+ .+.||+|+.|.+|++||+.+++....+.+++..+.++.|+|. ...|++|+.|++|.+.|.+.. +      
T Consensus       248 ~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk  327 (463)
T KOG0270|consen  248 ALSWNRNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWK  327 (463)
T ss_pred             HHHhccccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEE
Confidence            4455433 456899999999999999999999999988888999999996 578899999999999999842 1      


Q ss_pred             -cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC-ceeeeee-cCCcEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCe
Q psy10953         87 -SSWVLSTAFTRDGK-FFISASADHTVRVWNFARR-ENMHTFK-HADQVWCVCVAPDG-DKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        87 -~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~v~~~~~sp~g-~~l~~~~~d~~v~i~~~~~~~  161 (181)
                       .+.|-.++|.|... .++++..||+++-+|+|.. +++.+.+ |.++|.++++++.- .++++++.|+.|++|++....
T Consensus       328 ~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~  407 (463)
T KOG0270|consen  328 FDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS  407 (463)
T ss_pred             eccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence             34578899999875 6778889999999999975 7777776 88899999998764 468889999999999986543


Q ss_pred             e
Q psy10953        162 E  162 (181)
Q Consensus       162 ~  162 (181)
                      +
T Consensus       408 ~  408 (463)
T KOG0270|consen  408 P  408 (463)
T ss_pred             C
Confidence            3

>KOG0301|consensus

Probab=99.74  E-value=1.4e-16  Score=126.69  Aligned_cols=151  Identities=19%  Similarity=0.385  Sum_probs=127.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..+-.++..|.+++...++. +++|+.|.++++|..  +++...++.|...+..+..-|++ .+++|+.|++|++|.-
T Consensus        93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~--~~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~  168 (745)
T KOG0301|consen   93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRI--GELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG  168 (745)
T ss_pred             chhhhhccccceeeeecCCcCc-eEecccccceEEecc--hhhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccC
Confidence            5666777888899999888888 899999999999965  45555677888888888888877 7999999999999986


Q ss_pred             C------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         83 N------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        83 ~------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      .      .+|...|+.+++-+++. +++|+.||.|+.|++..........|+.-++++...++++.++++++|+++++|+
T Consensus       169 ~~~l~tf~gHtD~VRgL~vl~~~~-flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~  247 (745)
T KOG0301|consen  169 GTLLKTFSGHTDCVRGLAVLDDSH-FLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWK  247 (745)
T ss_pred             CchhhhhccchhheeeeEEecCCC-eEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEee
Confidence            4      47999999999988765 5689999999999995444444445889999999888899999999999999999


Q ss_pred             CC
Q psy10953        157 YK  158 (181)
Q Consensus       157 ~~  158 (181)
                      ..
T Consensus       248 ~~  249 (745)
T KOG0301|consen  248 KD  249 (745)
T ss_pred             cC
Confidence            75

>KOG2055|consensus

Probab=99.74  E-value=1.6e-16  Score=121.31  Aligned_cols=157  Identities=20%  Similarity=0.375  Sum_probs=133.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTR---GKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      .|+.+......+.++.|+|+|. .+++++....++.||+.+.++.++-...   ......+..|++++.|+..+..|.|.
T Consensus       249 ~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~  328 (514)
T KOG2055|consen  249 KLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIH  328 (514)
T ss_pred             hheeeeeccCccceeeecCCCceEEEecccceEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccCceEE
Confidence            4677888888889999999999 8899999999999999999876554322   23445678899999999999999999


Q ss_pred             EEeCCCCC-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcE--EEEEEccCCCEEEEEcCC
Q psy10953         79 IFDANTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQV--WCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        79 i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~~~d  149 (181)
                      +....++.       .+.|..+.|+.+++.|+.++.+|.|++||++...+++.+...+.+  +++|.|++|++||+|+..
T Consensus       329 lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~  408 (514)
T KOG2055|consen  329 LLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDS  408 (514)
T ss_pred             eehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCc
Confidence            99877643       456888999999999999999999999999999999888766655  468899999999999999


Q ss_pred             CcEEEEeCCC
Q psy10953        150 KAVHMYSYKP  159 (181)
Q Consensus       150 ~~v~i~~~~~  159 (181)
                      |-|.||+.++
T Consensus       409 GiVNIYd~~s  418 (514)
T KOG2055|consen  409 GIVNIYDGNS  418 (514)
T ss_pred             ceEEEeccch
Confidence            9999999643

>KOG0771|consensus

Probab=99.73  E-value=1.4e-16  Score=120.29  Aligned_cols=144  Identities=21%  Similarity=0.270  Sum_probs=121.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC--------
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH--------   86 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~--------   86 (181)
                      ..++|+++|..+++++.||++|+|+...-..+.....+...+.++.|||||+.|++.+.| ...+|+.++++        
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            578999999999999999999999977666655555566668899999999999999999 89999975320        


Q ss_pred             ------------------------------------------------------cccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         87 ------------------------------------------------------SSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        87 ------------------------------------------------------~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                                                                            ...|.+++.+++|++++.|+.||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                                                  11466789999999999999999999


Q ss_pred             EEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        113 VWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       113 v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +++..+-+.+.-.+  |..-|+.+.|+||.+++++.+.+.+..+..+..
T Consensus       307 i~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v  355 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV  355 (398)
T ss_pred             EEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence            99998877666554  777899999999999999999999988877644

>KOG4328|consensus

Probab=99.73  E-value=7.6e-17  Score=122.93  Aligned_cols=154  Identities=21%  Similarity=0.343  Sum_probs=126.4

Q ss_pred             eeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          4 ISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      +...+.+...|.++.|+| +-..+++++.||+|+.-|++.+....++..  ......++.|+.+...++.+..-|...+|
T Consensus       227 v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~i  306 (498)
T KOG4328|consen  227 VYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVI  306 (498)
T ss_pred             eEEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEE
Confidence            345566777899999998 556788999999999999998877665554  33345577888888878888877799999


Q ss_pred             eCCCC---------CcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC---c--eeeeeecCCcEEEEEEccCCCEEEE
Q psy10953         81 DANTG---------HSSWVLSTAFTRDG-KFFISASADHTVRVWNFARR---E--NMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        81 d~~~~---------~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~---~--~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      |++++         |...|..++++|-. .+++|++.|++++|||++.-   .  .+.++.|...|.++.|||++-.|++
T Consensus       307 D~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~T  386 (498)
T KOG4328|consen  307 DLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLT  386 (498)
T ss_pred             EeecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEe
Confidence            99854         45679999999965 58999999999999999852   2  2556678889999999999988999


Q ss_pred             EcCCCcEEEEeC
Q psy10953        146 VGEDKAVHMYSY  157 (181)
Q Consensus       146 ~~~d~~v~i~~~  157 (181)
                      .+.|+.|+||+-
T Consensus       387 T~~D~~IRv~ds  398 (498)
T KOG4328|consen  387 TCQDNEIRVFDS  398 (498)
T ss_pred             eccCCceEEeec
Confidence            999999999998

>KOG0300|consensus

Probab=99.73  E-value=2.7e-17  Score=120.97  Aligned_cols=153  Identities=17%  Similarity=0.328  Sum_probs=134.5

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC---
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN---   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~---   83 (181)
                      +..+...+|.++-......+.+++.|.+.++|.+++++++..+..|...+.++.|++.+.++++++.|++.+||...   
T Consensus       144 ~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~  223 (481)
T KOG0300|consen  144 LEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNW  223 (481)
T ss_pred             hcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcC
Confidence            34566778999988888888999999999999999999999999998888999999999999999999999999621   


Q ss_pred             ---------------------------------------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy10953         84 ---------------------------------------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR  118 (181)
Q Consensus        84 ---------------------------------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~  118 (181)
                                                                   ++|...|.+..|...|+.+++++-|.+..+||..+
T Consensus       224 ~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDRTAnlwDVEt  303 (481)
T KOG0300|consen  224 EVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDRTANLWDVET  303 (481)
T ss_pred             cCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccccceeeeecc
Confidence                                                         12334566777888899999999999999999999


Q ss_pred             Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        119 RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       119 ~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +..+..+. |..+.+.++-+|..+.+++.+.|.+.++||+..
T Consensus       304 ge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFRe  345 (481)
T KOG0300|consen  304 GEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFRE  345 (481)
T ss_pred             CceeccccCcchhccccccCCcceEEEEeccCceeEeccchh
Confidence            99888775 778899999999999999999999999999974

>KOG2048|consensus

Probab=99.73  E-value=5.2e-16  Score=123.09  Aligned_cols=158  Identities=25%  Similarity=0.446  Sum_probs=132.7

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEECCCCCEEEEeeCCCcEEE
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ--IFDTRGKFTLSIAYSTDGHWIASGALDGIINI   79 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i   79 (181)
                      +++..+......+|+++.+|.+..++.|++||.+..++...+++..  .+......+.+++|+|++..++.|+.||.|++
T Consensus       101 k~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iri  180 (691)
T KOG2048|consen  101 KQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRI  180 (691)
T ss_pred             ceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEE
Confidence            5667777788889999999999999999999988889888887763  34445566889999999999999999999999


Q ss_pred             EeCCCCCcc----------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCE
Q psy10953         80 FDANTGHSS----------------WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK  142 (181)
Q Consensus        80 ~d~~~~~~~----------------~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~  142 (181)
                      ||+.+++..                -|.++.|-.+ ..+++|...|+|.+||...+..+..+. |...|.+++..+++.+
T Consensus       181 wd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~  259 (691)
T KOG2048|consen  181 WDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDR  259 (691)
T ss_pred             EEcCCCceEEEeeecccccccCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCe
Confidence            999765432                2456666654 457899999999999999998887776 7788999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCC
Q psy10953        143 FVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~  160 (181)
                      +++++.|+.|..|...+.
T Consensus       260 vfsaGvd~~ii~~~~~~~  277 (691)
T KOG2048|consen  260 VFSAGVDPKIIQYSLTTN  277 (691)
T ss_pred             EEEccCCCceEEEEecCC
Confidence            999999999988887654

>KOG0267|consensus

Probab=99.72  E-value=1.8e-17  Score=132.27  Aligned_cols=155  Identities=23%  Similarity=0.423  Sum_probs=132.2

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      .+...+.++.+-..++.+++|+.|..+.+|.+..-..+..+..|...+.++.|+++..+|++|+.+|+|++||+..    
T Consensus        26 ~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk~v  105 (825)
T KOG0267|consen   26 AHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAITSLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAKIV  105 (825)
T ss_pred             hhhhhhceeeeeccceeeccCCCceeeccccccCCchhheeeccCCcceeeecCcchhhhcccccCCceeeeehhhhhhh
Confidence            3444556666666778899999999999998765555555667888899999999999999999999999999973    


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                          +|...+..+.|+|-+.+.+.++.|..+++||.+...+.+.+. |...+..++|+|+|++++.+++|+.+++||...
T Consensus       106 rtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~a  185 (825)
T KOG0267|consen  106 RTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTA  185 (825)
T ss_pred             hhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccc
Confidence                667778899999999999999999999999999877887776 777789999999999999999999999999976


Q ss_pred             CeeE
Q psy10953        160 EEEV  163 (181)
Q Consensus       160 ~~~~  163 (181)
                      |..+
T Consensus       186 gk~~  189 (825)
T KOG0267|consen  186 GKLS  189 (825)
T ss_pred             cccc
Confidence            6554

>KOG0647|consensus

Probab=99.72  E-value=5.3e-16  Score=113.11  Aligned_cols=151  Identities=17%  Similarity=0.258  Sum_probs=117.5

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC--EEEEeeCCCcEEEEeCCCCC
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH--WIASGALDGIINIFDANTGH   86 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~--~l~~~~~d~~v~i~d~~~~~   86 (181)
                      .....+.+++|+.||..+++|+-|+.+++||+.+++..++ ..|...+..+.|-+...  .|++|+.|++++.||.+...
T Consensus        70 ~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~Q~~~v-~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~  148 (347)
T KOG0647|consen   70 SHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASGQVSQV-AAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSN  148 (347)
T ss_pred             ccCCCeEEEEEccCCceEEeeccCCceEEEEccCCCeeee-eecccceeEEEEecCCCcceeEecccccceeecccCCCC
Confidence            3556689999999999999999999999999999976554 55666677888876554  78999999999999976310


Q ss_pred             -------------------------------------------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy10953         87 -------------------------------------------------SSWVLSTAFTRDGKFFISASADHTVRVWNFA  117 (181)
Q Consensus        87 -------------------------------------------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~  117 (181)
                                                                       +-.+++++..++.+..+-|+.+|.+.+..+.
T Consensus       149 pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id  228 (347)
T KOG0647|consen  149 PVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYID  228 (347)
T ss_pred             eeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecC
Confidence                                                             1135677878887777888888988888877


Q ss_pred             CCce--eeeee-cC---------CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        118 RREN--MHTFK-HA---------DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       118 ~~~~--~~~~~-~~---------~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      .+..  -.+++ |.         -.|++++|+|.-..|++++.||.+..||-+..
T Consensus       229 ~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar  283 (347)
T KOG0647|consen  229 DPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDAR  283 (347)
T ss_pred             CCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhh
Confidence            6522  22222 22         14778999999999999999999999996543

>KOG0641|consensus

Probab=99.72  E-value=1.4e-15  Score=107.41  Aligned_cols=138  Identities=19%  Similarity=0.307  Sum_probs=117.0

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-------CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------C
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDT-------RGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------G   85 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-------~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~   85 (181)
                      =+|-.+++|++|++|++||++-...+..+..       +...+..++..|.|++|++|..|....+||++.        .
T Consensus       192 wn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~p  271 (350)
T KOG0641|consen  192 WNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHP  271 (350)
T ss_pred             ecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCC
Confidence            3778899999999999999998877766543       124567899999999999999999999999975        3


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-----ceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-----ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 ~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      |...|.++.|+|...++++++.|-.|++=|+...     ..+..-.|.+.+..+.|+|+.--|++.+.|+++.+|.+.
T Consensus       272 hsadir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~  349 (350)
T KOG0641|consen  272 HSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN  349 (350)
T ss_pred             CccceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence            6778999999999999999999999999998642     123333588888899999999889999999999999875

>KOG0303|consensus

Probab=99.72  E-value=2.3e-16  Score=118.57  Aligned_cols=152  Identities=18%  Similarity=0.285  Sum_probs=121.1

Q ss_pred             eccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcE-------EEEEecCCceEEEEEECCCC-CEEEEeeCCCcE
Q psy10953          7 INVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKL-------EQIFDTRGKFTLSIAYSTDG-HWIASGALDGII   77 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v   77 (181)
                      +..+...+.+++|+| +.+.+|+|+.|.+|++|.+..+.+       ...+..|...+-.+.|+|-. +.|++++.|+.|
T Consensus        77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v  156 (472)
T KOG0303|consen   77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV  156 (472)
T ss_pred             ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence            345677789999998 666789999999999999976543       33455667767678999964 678899999999


Q ss_pred             EEEeCCCC-------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCC-cEEEEEEccCCCEEEEEc-
Q psy10953         78 NIFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HAD-QVWCVCVAPDGDKFVSVG-  147 (181)
Q Consensus        78 ~i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~-~v~~~~~sp~g~~l~~~~-  147 (181)
                      .+|++.++       |...|.++.|+.+|.++++.+.|+.|+|||.++++.+..-. |.+ ....+.|-.+|..+-+|- 
T Consensus       157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs  236 (472)
T KOG0303|consen  157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS  236 (472)
T ss_pred             EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence            99999765       57789999999999999999999999999999999887763 543 345566777888444443 


Q ss_pred             --CCCcEEEEeCC
Q psy10953        148 --EDKAVHMYSYK  158 (181)
Q Consensus       148 --~d~~v~i~~~~  158 (181)
                        .++.+.+|+-.
T Consensus       237 r~seRq~aLwdp~  249 (472)
T KOG0303|consen  237 RMSERQIALWDPN  249 (472)
T ss_pred             cccccceeccCcc
Confidence              46789999864

>KOG0321|consensus

Probab=99.71  E-value=4.9e-16  Score=122.71  Aligned_cols=153  Identities=18%  Similarity=0.285  Sum_probs=117.5

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE--EecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQI--FDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~--~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~   83 (181)
                      -..+-.-++++.|-|....|++++.|.++++||+++.++...  +..|...+.+++|.|.. ..|++|+.||.+.+||.+
T Consensus        96 ~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R  175 (720)
T KOG0321|consen   96 PLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCR  175 (720)
T ss_pred             cccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEe
Confidence            344555689999999888899999999999999999998765  66677778899999965 678899999999999974


Q ss_pred             C------------------C-----------------CcccEEE---EEEcCCCCEEEEEeC-CCcEEEEecCCCceeee
Q psy10953         84 T------------------G-----------------HSSWVLS---TAFTRDGKFFISASA-DHTVRVWNFARRENMHT  124 (181)
Q Consensus        84 ~------------------~-----------------~~~~v~~---~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~  124 (181)
                      -                  +                 +...|..   +-+..|..+|++++. |+.|+|||++.......
T Consensus       176 ~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r  255 (720)
T KOG0321|consen  176 CNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYR  255 (720)
T ss_pred             ccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccc
Confidence            1                  0                 1122333   456678888998887 99999999986432211


Q ss_pred             --------ee-c---CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        125 --------FK-H---ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       125 --------~~-~---~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                              +. +   .-.+.++.....|.++++.+.|+.|+.|++..
T Consensus       256 ~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s  302 (720)
T KOG0321|consen  256 QEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRS  302 (720)
T ss_pred             cCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccc
Confidence                    11 1   12467888888899988888899999999854

>KOG1408|consensus

Probab=99.69  E-value=8.1e-16  Score=123.22  Aligned_cols=158  Identities=20%  Similarity=0.390  Sum_probs=133.7

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC---CCEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD---GHWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d---~~~l~~~~~d~~v~i~d~~   83 (181)
                      .-.+...++++++||+|++||+|.--|++++|++..-........|...+.|+.+|.-   .++|++++.|..|++||+.
T Consensus       455 ~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~  534 (1080)
T KOG1408|consen  455 TCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVK  534 (1080)
T ss_pred             hcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecc
Confidence            3446677899999999999999999999999999887777777788888889999863   4788999999999999964


Q ss_pred             C---------CC-------------------------------------------------cccEEEEEEcCCCCEEEEE
Q psy10953         84 T---------GH-------------------------------------------------SSWVLSTAFTRDGKFFISA  105 (181)
Q Consensus        84 ~---------~~-------------------------------------------------~~~v~~~~~s~~~~~l~~~  105 (181)
                      .         +|                                                 +..+.+++..|..++++++
T Consensus       535 rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~  614 (1080)
T KOG1408|consen  535 RNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTV  614 (1080)
T ss_pred             cccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEE
Confidence            1         11                                                 1235678889999999999


Q ss_pred             eCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        106 SADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       106 ~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      +.|.+|+|||+..++....|+    |.+...-+.+.|.|-++++.+.|+++.++|+.+++-+.
T Consensus       615 cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA  677 (1080)
T KOG1408|consen  615 CQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVA  677 (1080)
T ss_pred             ecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhh
Confidence            999999999999998888775    45667788899999999999999999999998887654

>KOG1036|consensus

Probab=99.69  E-value=3.4e-15  Score=109.06  Aligned_cols=157  Identities=18%  Similarity=0.252  Sum_probs=120.7

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.++..++....+++|+.|++|++||.+.......+.... -+.++..  .|..|+.|..|..|.+||+++
T Consensus        88 ~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~k-kVy~~~v--~g~~LvVg~~~r~v~iyDLRn  164 (323)
T KOG1036|consen   88 DQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGK-KVYCMDV--SGNRLVVGTSDRKVLIYDLRN  164 (323)
T ss_pred             eeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCc-eEEEEec--cCCEEEEeecCceEEEEEccc
Confidence            3456677789999999988999999999999999998755444444333 4555544  578899999999999999974


Q ss_pred             C----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC----ceeeeee-cC---------CcEEEEEEccCC
Q psy10953         85 G----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR----ENMHTFK-HA---------DQVWCVCVAPDG  140 (181)
Q Consensus        85 ~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~-~~---------~~v~~~~~sp~g  140 (181)
                      -          -+..++++++-|++.-+++++-||.|.+=.+...    +.-..++ |.         -+|++++|+|--
T Consensus       165 ~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~  244 (323)
T KOG1036|consen  165 LDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH  244 (323)
T ss_pred             ccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc
Confidence            2          2346899999999998999999999987665543    1111222 21         268999999999


Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        141 DKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       141 ~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      +.|++|+.||.|.+|+.....++.
T Consensus       245 ~tfaTgGsDG~V~~Wd~~~rKrl~  268 (323)
T KOG1036|consen  245 GTFATGGSDGIVNIWDLFNRKRLK  268 (323)
T ss_pred             ceEEecCCCceEEEccCcchhhhh
Confidence            999999999999999997765543

>KOG1009|consensus

Probab=99.69  E-value=4.5e-16  Score=117.21  Aligned_cols=153  Identities=20%  Similarity=0.341  Sum_probs=127.9

Q ss_pred             CeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCc---------EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEE
Q psy10953         10 GPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGK---------LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI   79 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~---------~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i   79 (181)
                      +...++.+.|.++.. .+++|+.|..|++|-+..+.         ....+..|...+..+.|+|+|..|++|+.+|.+.+
T Consensus        12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~l   91 (434)
T KOG1009|consen   12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFL   91 (434)
T ss_pred             CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCcCeeeecCCCceEEE
Confidence            555678999998877 99999999999999774321         22345567778889999999999999999999999


Q ss_pred             EeCC--------C----------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEE
Q psy10953         80 FDAN--------T----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCV  134 (181)
Q Consensus        80 ~d~~--------~----------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~  134 (181)
                      |-..        +                +|...+..++|+|+++++++++.|..+++||+..+....... |...+..+
T Consensus        92 Wk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgv  171 (434)
T KOG1009|consen   92 WKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGV  171 (434)
T ss_pred             EEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCceeeeeeccceEEEEEeccceeEeecccccccccee
Confidence            9754        1                244567789999999999999999999999999998887775 77889999


Q ss_pred             EEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ++.|-++++++-+.|+..+.+.+...+.
T Consensus       172 awDpl~qyv~s~s~dr~~~~~~~~~~~~  199 (434)
T KOG1009|consen  172 AWDPLNQYVASKSSDRHPEGFSAKLKQV  199 (434)
T ss_pred             ecchhhhhhhhhccCcccceeeeeeeee
Confidence            9999999999999998777777765543

>KOG4283|consensus

Probab=99.69  E-value=1.6e-15  Score=110.66  Aligned_cols=147  Identities=20%  Similarity=0.300  Sum_probs=114.2

Q ss_pred             eEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEE---EE-------E--e---cCCceEEEEEECC-CCCEEEEeeCCC
Q psy10953         13 DMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLE---QI-------F--D---TRGKFTLSIAYST-DGHWIASGALDG   75 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~---~~-------~--~---~~~~~~~~~~~s~-d~~~l~~~~~d~   75 (181)
                      .+..+.+.+ .|+++++|+.||.|.+||++.....   ..       +  +   .|...+.++.|-| |.-.|.+++.|.
T Consensus        45 svNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFtssSFDh  124 (397)
T KOG4283|consen   45 SVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTSSSFDH  124 (397)
T ss_pred             ccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeecccccc
Confidence            355666665 6889999999999999999754310   00       0  1   1233455677776 566788899999


Q ss_pred             cEEEEeCCCC-------CcccEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCE-E
Q psy10953         76 IINIFDANTG-------HSSWVLSTAFTRD---GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK-F  143 (181)
Q Consensus        76 ~v~i~d~~~~-------~~~~v~~~~~s~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~-l  143 (181)
                      .+++||..+-       ....|..-++||=   ..++++|..+-.|++.|++.+...+++. |.+.|..+.|+|..++ |
T Consensus       125 tlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~~e~vL  204 (397)
T KOG4283|consen  125 TLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPSSEWVL  204 (397)
T ss_pred             eEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccCceeEE
Confidence            9999998753       3456777788884   3477888889999999999999888886 9999999999999887 6


Q ss_pred             EEEcCCCcEEEEeCCC
Q psy10953        144 VSVGEDKAVHMYSYKP  159 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~  159 (181)
                      ++|+.|+.|++||++.
T Consensus       205 atgsaDg~irlWDiRr  220 (397)
T KOG4283|consen  205 ATGSADGAIRLWDIRR  220 (397)
T ss_pred             EecCCCceEEEEEeec
Confidence            8888999999999864

>KOG1538|consensus

Probab=99.69  E-value=3.1e-16  Score=124.83  Aligned_cols=157  Identities=19%  Similarity=0.359  Sum_probs=131.5

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC------CC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT------GH   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~------~~   86 (181)
                      -+.+++|.|||..|+.+. +..+.+||...|.+.+.+..|.+-+++++|+.||+.+++|+.|+.|.+|...-      .|
T Consensus        14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH   92 (1081)
T KOG1538|consen   14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSH   92 (1081)
T ss_pred             chheeEECCCCceEEEec-CCEEEEEeCCCcccccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeecc
Confidence            468999999999998776 45899999999999999999999999999999999999999999999998652      47


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953         87 SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus        87 ~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      ...|.++.|+|-.+.|++++-. ..-+|..... .+...+...++.+++|..||++++.|-.+|+|.+-+-..++.+++.
T Consensus        93 ~D~IQCMsFNP~~h~LasCsLs-dFglWS~~qK-~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~  170 (1081)
T KOG1538|consen   93 NDAIQCMSFNPITHQLASCSLS-DFGLWSPEQK-SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIE  170 (1081)
T ss_pred             CCeeeEeecCchHHHhhhcchh-hccccChhhh-hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEe
Confidence            8889999999999999988854 4567765443 3334445567899999999999999999999999877666677787


Q ss_pred             CCCCcc
Q psy10953        167 GGGGEE  172 (181)
Q Consensus       167 ~~~~~~  172 (181)
                      ++|+.+
T Consensus       171 Rpgg~N  176 (1081)
T KOG1538|consen  171 RPGGSN  176 (1081)
T ss_pred             CCCCCC
Confidence            776544

>KOG2110|consensus

Probab=99.66  E-value=2.6e-14  Score=106.74  Aligned_cols=145  Identities=19%  Similarity=0.354  Sum_probs=115.1

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEECCCCCEEEEee--CCCcEEEEeCCC--
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR---GKFTLSIAYSTDGHWIASGA--LDGIINIFDANT--   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~s~d~~~l~~~~--~d~~v~i~d~~~--   84 (181)
                      ..+.++.+  +-++|++.-.+ .|.+||+++-++++.+...   ...+..+++++.+.+++.-+  ..|.|.+||+.+  
T Consensus        88 t~IL~Vrm--Nr~RLvV~Lee-~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~  164 (391)
T KOG2110|consen   88 TSILAVRM--NRKRLVVCLEE-SIYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQ  164 (391)
T ss_pred             CceEEEEE--ccceEEEEEcc-cEEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccce
Confidence            33445555  55677666555 4999999999988776643   22244556666677898743  358999999863  


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHT-VRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                            .|.+.+.+++|+++|.+|||++..|+ |+||...+++.+.++.   ....|++++|+|++++|++.|..++|++
T Consensus       165 ~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHi  244 (391)
T KOG2110|consen  165 PVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHI  244 (391)
T ss_pred             eeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEE
Confidence                  58899999999999999999998886 7899999999988886   3456899999999999999999999999


Q ss_pred             EeCCC
Q psy10953        155 YSYKP  159 (181)
Q Consensus       155 ~~~~~  159 (181)
                      |.+..
T Consensus       245 FKL~~  249 (391)
T KOG2110|consen  245 FKLEK  249 (391)
T ss_pred             EEecc
Confidence            99864

>KOG4378|consensus

Probab=99.65  E-value=1.1e-14  Score=112.64  Aligned_cols=156  Identities=15%  Similarity=0.277  Sum_probs=132.7

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEE-EEeeCCCcEEEEeC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWI-ASGALDGIINIFDA   82 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~   82 (181)
                      ..+..+...|.++.+.-...+||+++..|.|.+..+.++.....|... +..+.-+.++|..+.+ .+++.+|.|.+||.
T Consensus       115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv  194 (673)
T KOG4378|consen  115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDV  194 (673)
T ss_pred             hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEec
Confidence            345567777899999999999999999999999999998877777654 5556578999987765 56899999999998


Q ss_pred             CC---------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         83 NT---------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        83 ~~---------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      ..         .|..+...+.|+|.. .+|++.+.|+.|.+||.+.......+....+...++|+++|.+|++|...|.|
T Consensus       195 ~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s~G~~  274 (673)
T KOG4378|consen  195 QGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNSKGEL  274 (673)
T ss_pred             cCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecCCceE
Confidence            63         366677889999976 48899999999999999988878777777889999999999999999999999


Q ss_pred             EEEeCCCC
Q psy10953        153 HMYSYKPE  160 (181)
Q Consensus       153 ~i~~~~~~  160 (181)
                      .-||++..
T Consensus       275 i~YD~R~~  282 (673)
T KOG4378|consen  275 IAYDMRST  282 (673)
T ss_pred             EEEecccC
Confidence            99999653

>KOG1445|consensus

Probab=99.65  E-value=9e-16  Score=121.67  Aligned_cols=146  Identities=25%  Similarity=0.401  Sum_probs=114.4

Q ss_pred             eEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcE-------EEEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCC
Q psy10953         13 DMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKL-------EQIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDAN   83 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~-------~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~   83 (181)
                      .+.++.|.| |..+||.+++||.|++|.+..+.+       ...+..|+.-++++.|+|- ...|+++++|.+|.+||+.
T Consensus       629 ~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~  708 (1012)
T KOG1445|consen  629 LVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLA  708 (1012)
T ss_pred             eeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehh
Confidence            378899998 778899999999999999876533       3456667777889999994 4678899999999999996


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeee--cCCcEEEEEEccCCCEEEEEcCC---
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK--HADQVWCVCVAPDGDKFVSVGED---  149 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~--~~~~v~~~~~sp~g~~l~~~~~d---  149 (181)
                      .        +|...|..++|||+|+.+++.+.||++++|+.+.+... ..-+  ...+--.+.|--+|+++++.+-|   
T Consensus       709 ~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk~S  788 (1012)
T KOG1445|consen  709 NAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDKSS  788 (1012)
T ss_pred             hhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccccc
Confidence            3        68899999999999999999999999999998876432 2211  11222335556689998887744   


Q ss_pred             -CcEEEEeCC
Q psy10953        150 -KAVHMYSYK  158 (181)
Q Consensus       150 -~~v~i~~~~  158 (181)
                       +.|.+|+..
T Consensus       789 eRQv~~Y~Aq  798 (1012)
T KOG1445|consen  789 ERQVQMYDAQ  798 (1012)
T ss_pred             hhhhhhhhhh
Confidence             567787753

>KOG0268|consensus

Probab=99.64  E-value=3.2e-15  Score=111.43  Aligned_cols=156  Identities=15%  Similarity=0.239  Sum_probs=116.7

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC---------------------------cEEEEE------
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG---------------------------KLEQIF------   49 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~---------------------------~~~~~~------   49 (181)
                      ++..+..+..-|..|+++.  ..++++++|++|+.|.+...                           +.+.++      
T Consensus       101 ~~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~  178 (433)
T KOG0268|consen  101 CIRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDN  178 (433)
T ss_pred             hhheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCC
Confidence            4667777888888888875  66788889998888874321                           111111      


Q ss_pred             -----ecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCC-------cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         50 -----DTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANTGH-------SSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        50 -----~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                           ....+.+.++.|+|-. ..|++++.|+.+.+||++.+.       ....+.++|+|.+--+++++.|..++.||+
T Consensus       179 Pv~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~Dm  258 (433)
T KOG0268|consen  179 PVSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDM  258 (433)
T ss_pred             ccceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhh
Confidence                 1111233466777754 456778899999999998653       234678899998878889999999999999


Q ss_pred             CCCc-eeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        117 ARRE-NMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       117 ~~~~-~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      +... ++..+ .|...|.++.|||.|+-|++||.|++|+||....+
T Consensus       259 R~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~  304 (433)
T KOG0268|consen  259 RNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHG  304 (433)
T ss_pred             hhhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCC
Confidence            8754 33333 37889999999999999999999999999998654

>KOG1273|consensus

Probab=99.64  E-value=2.3e-14  Score=105.44  Aligned_cols=165  Identities=18%  Similarity=0.284  Sum_probs=122.9

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-----------------------eE--------
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----------------------FT--------   56 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------------------~~--------   56 (181)
                      ..+--.+.+++||+||+.|++++.|-.|.+||+..|..++.+.....                       .+        
T Consensus        62 saH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h  141 (405)
T KOG1273|consen   62 SAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKH  141 (405)
T ss_pred             hccccceeEEEecCCCCEeeeecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecCCce
Confidence            44566689999999999999999999999999998876554432110                       00        


Q ss_pred             ---------------EEEEECCCCCEEEEeeCCCcEEEEeCCCCC---------cccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         57 ---------------LSIAYSTDGHWIASGALDGIINIFDANTGH---------SSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        57 ---------------~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---------~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                                     .+..|.+.|+++++|..-|.+.+||..+-+         ...|..+-++..|+.|+..+.|..|+
T Consensus       142 ~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR  221 (405)
T KOG1273|consen  142 SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIR  221 (405)
T ss_pred             eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEE
Confidence                           012255678899999999999999987532         13466778999999999999999999


Q ss_pred             EEecCCC-------cee--eeee---cCCcEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeeEEEcCCCCcc
Q psy10953        113 VWNFARR-------ENM--HTFK---HADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYKPEEEVEVNGGGGEE  172 (181)
Q Consensus       113 v~d~~~~-------~~~--~~~~---~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~~~~~~~~~~~~~~~  172 (181)
                      .|++..-       +..  +.++   ....-.+++||.+|.++++++. ...++||.-..|..++++.|.++|
T Consensus       222 ~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG~kgE  294 (405)
T KOG1273|consen  222 TYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHGTKGE  294 (405)
T ss_pred             EEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecCCchh
Confidence            9997631       111  1111   1223457999999999988885 468999999999999999886543

>KOG1007|consensus

Probab=99.64  E-value=2.3e-14  Score=104.30  Aligned_cols=144  Identities=22%  Similarity=0.358  Sum_probs=111.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-EEEEecC-----CceEEEEEECC--CCCEEEEeeCCCcEEEEeCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL-EQIFDTR-----GKFTLSIAYST--DGHWIASGALDGIINIFDANT   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~-----~~~~~~~~~s~--d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      .+.++.|.|++..+++-. |..|.+|+++.+.. ...+...     .....+-+|+|  ||..+++. .|+++..||+++
T Consensus       125 ~i~cvew~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT  202 (370)
T KOG1007|consen  125 KINCVEWEPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRT  202 (370)
T ss_pred             ceeeEEEcCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccc
Confidence            578999999999998876 88999999986655 2322211     11223567887  77777654 488999999975


Q ss_pred             C---------CcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCc-eeeeee-cCCcEEEEEEccCC-CEEEEEcCCCc
Q psy10953         85 G---------HSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRE-NMHTFK-HADQVWCVCVAPDG-DKFVSVGEDKA  151 (181)
Q Consensus        85 ~---------~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~sp~g-~~l~~~~~d~~  151 (181)
                      .         |...|+.+.|+|+-+ +|++|+.|+.|++||.+..+ ++.+.+ |...||+++|+|.- +.+.++|.|..
T Consensus       203 ~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~  282 (370)
T KOG1007|consen  203 MKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSA  282 (370)
T ss_pred             hhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCce
Confidence            3         455689999999976 78899999999999998754 444444 77789999999964 56788889999


Q ss_pred             EEEEeCC
Q psy10953        152 VHMYSYK  158 (181)
Q Consensus       152 v~i~~~~  158 (181)
                      |.+|...
T Consensus       283 V~Lsca~  289 (370)
T KOG1007|consen  283 VNLSCAS  289 (370)
T ss_pred             eEEEecc
Confidence            9999864

>KOG0302|consensus

Probab=99.64  E-value=6.9e-15  Score=110.16  Aligned_cols=138  Identities=17%  Similarity=0.304  Sum_probs=108.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCC----------------cEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCC
Q psy10953         22 DDKYVLSGSQSGKINLYGVETG----------------KLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANT   84 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~----------------~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~   84 (181)
                      +..+.++=+..|.|++|++..-                +.+..+..|+..-+.++|||-- ..|++|..-+.+++|...+
T Consensus       164 ~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~  243 (440)
T KOG0302|consen  164 NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST  243 (440)
T ss_pred             CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeeecccccccccccCccccceEeeeecc
Confidence            4445666677899999987432                1233444455556789999932 2378899999999997643


Q ss_pred             -----------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC---ceeeeeecCCcEEEEEEccCCCEEEEEcCC
Q psy10953         85 -----------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARR---ENMHTFKHADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        85 -----------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                                 +|+..|-.++|||..+ .|++|+.|++|+|||++.+   ..+..-.|...|+.+.|+.+..+|++|+.|
T Consensus       244 g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~Dd  323 (440)
T KOG0302|consen  244 GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDD  323 (440)
T ss_pred             CceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCC
Confidence                       5888899999999865 8899999999999999987   345554588899999999988899999999


Q ss_pred             CcEEEEeCCC
Q psy10953        150 KAVHMYSYKP  159 (181)
Q Consensus       150 ~~v~i~~~~~  159 (181)
                      |.++|||++.
T Consensus       324 Gt~~iwDLR~  333 (440)
T KOG0302|consen  324 GTLSIWDLRQ  333 (440)
T ss_pred             ceEEEEEhhh
Confidence            9999999864

>KOG2394|consensus

Probab=99.64  E-value=1.2e-15  Score=118.59  Aligned_cols=94  Identities=29%  Similarity=0.610  Sum_probs=79.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +..+.+..+..+..++|||||++||+.++||.+|+||..+.+++..... .+. ..|++|||||+++++|+.|..|.+|.
T Consensus       282 Pv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGG-LLCvcWSPDGKyIvtGGEDDLVtVwS  360 (636)
T KOG2394|consen  282 PVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGG-LLCVCWSPDGKYIVTGGEDDLVTVWS  360 (636)
T ss_pred             ccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccc-eEEEEEcCCccEEEecCCcceEEEEE
Confidence            3455666666778899999999999999999999999988877654433 244 46999999999999999999999998


Q ss_pred             CC--------CCCcccEEEEEEcC
Q psy10953         82 AN--------TGHSSWVLSTAFTR   97 (181)
Q Consensus        82 ~~--------~~~~~~v~~~~~s~   97 (181)
                      ..        .+|++||..++|+|
T Consensus       361 f~erRVVARGqGHkSWVs~VaFDp  384 (636)
T KOG2394|consen  361 FEERRVVARGQGHKSWVSVVAFDP  384 (636)
T ss_pred             eccceEEEeccccccceeeEeecc
Confidence            75        47999999999998

>KOG2048|consensus

Probab=99.63  E-value=1.2e-13  Score=109.90  Aligned_cols=155  Identities=14%  Similarity=0.253  Sum_probs=126.7

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-EEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ-IFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~-~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      .-|..+.++|++.+.+.||.+=.||.|.+|++..+-+.. .+.. ....+.+++|++ +..|.+.+.+|.|.-||+.+..
T Consensus        23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~~RLFS~g~sg~i~EwDl~~lk  101 (691)
T KOG2048|consen   23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-GGRLFSSGLSGSITEWDLHTLK  101 (691)
T ss_pred             eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-CCeEEeecCCceEEEEecccCc
Confidence            356678899999999999999999999999998765543 3332 345678899995 5558888889999999997643


Q ss_pred             --------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--e-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         87 --------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--K-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        87 --------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                              .+.|.+++.+|.+..++.++.||.++.++...+......  . -.+++.++.|+|++..++.|+.|+.|++|
T Consensus       102 ~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriw  181 (691)
T KOG2048|consen  102 QKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIW  181 (691)
T ss_pred             eeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEE
Confidence                    356889999999999999999997777777766654432  2 34789999999999999999999999999


Q ss_pred             eCCCCeeEE
Q psy10953        156 SYKPEEEVE  164 (181)
Q Consensus       156 ~~~~~~~~~  164 (181)
                      |...++.+.
T Consensus       182 d~~~~~t~~  190 (691)
T KOG2048|consen  182 DVKSGQTLH  190 (691)
T ss_pred             EcCCCceEE
Confidence            999988776

>KOG2445|consensus

Probab=99.63  E-value=1.6e-13  Score=100.61  Aligned_cols=149  Identities=19%  Similarity=0.384  Sum_probs=112.4

Q ss_pred             ccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC-------cE--EEEEecCCceEEEEEECCC--CCEEEEeeCC
Q psy10953          8 NVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETG-------KL--EQIFDTRGKFTLSIAYSTD--GHWIASGALD   74 (181)
Q Consensus         8 ~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~-------~~--~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d   74 (181)
                      ..+...++-+.|.+  -|+.+|+++.|+++.+|.-...       +-  ...+......+.+++|.|.  |-.+++++.|
T Consensus        56 rah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aD  135 (361)
T KOG2445|consen   56 RAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASAD  135 (361)
T ss_pred             EecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccC
Confidence            34566678888864  6899999999999999975211       11  1222233445778999885  6789999999


Q ss_pred             CcEEEEeCCC----------------------------------------------------------------------
Q psy10953         75 GIINIFDANT----------------------------------------------------------------------   84 (181)
Q Consensus        75 ~~v~i~d~~~----------------------------------------------------------------------   84 (181)
                      |.+++|++..                                                                      
T Consensus       136 G~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~k  215 (361)
T KOG2445|consen  136 GILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLK  215 (361)
T ss_pred             cEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeee
Confidence            9999997420                                                                      


Q ss_pred             -----CCcccEEEEEEcCC-C---CEEEEEeCCCcEEEEecCCC--------------------ceeeeee-cCCcEEEE
Q psy10953         85 -----GHSSWVLSTAFTRD-G---KFFISASADHTVRVWNFARR--------------------ENMHTFK-HADQVWCV  134 (181)
Q Consensus        85 -----~~~~~v~~~~~s~~-~---~~l~~~~~d~~i~v~d~~~~--------------------~~~~~~~-~~~~v~~~  134 (181)
                           +|...|++++|.|+ |   .+|++++.|| |+||.++..                    +.+..+. |.++||.+
T Consensus       216 va~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv  294 (361)
T KOG2445|consen  216 VAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRV  294 (361)
T ss_pred             ehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEE
Confidence                 13456889999996 3   5789999999 999998621                    1222233 77899999


Q ss_pred             EEccCCCEEEEEcCCCcEEEEeC
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      +|.-.|..|++.|.||.|++|..
T Consensus       295 ~wNmtGtiLsStGdDG~VRLWka  317 (361)
T KOG2445|consen  295 RWNMTGTILSSTGDDGCVRLWKA  317 (361)
T ss_pred             EEeeeeeEEeecCCCceeeehhh
Confidence            99999999999999999999985

>KOG0642|consensus

Probab=99.63  E-value=2e-14  Score=112.22  Aligned_cols=160  Identities=16%  Similarity=0.269  Sum_probs=134.5

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----------cEEEEEecCCceEEEEEECCCCCEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG----------KLEQIFDTRGKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~----------~~~~~~~~~~~~~~~~~~s~d~~~l~~~   71 (181)
                      ++|..+..++..|.++++++++..+++|+-||+|+.|++...          .+...+.+|.+.++.+++|.....|++.
T Consensus       335 epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llsc  414 (577)
T KOG0642|consen  335 EPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSC  414 (577)
T ss_pred             eeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeee
Confidence            578888899999999999999999999999999999966422          2234566778888899999988889999


Q ss_pred             eCCCcEEEEeCCCC-------------------------C----------------------------------cccEEE
Q psy10953         72 ALDGIINIFDANTG-------------------------H----------------------------------SSWVLS   92 (181)
Q Consensus        72 ~~d~~v~i~d~~~~-------------------------~----------------------------------~~~v~~   92 (181)
                      +.||+++.|+....                         |                                  ...++.
T Consensus       415 s~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~  494 (577)
T KOG0642|consen  415 SSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINK  494 (577)
T ss_pred             cCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccce
Confidence            99999999985310                         0                                  013455


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      +...|.+...+++-.|+.|+++|..++..++... |...+.++++.|+|-+|++++.|+.+++|.+...+
T Consensus       495 vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~  564 (577)
T KOG0642|consen  495 VVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKT  564 (577)
T ss_pred             EEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchh
Confidence            6788888888999999999999999999888765 78889999999999999999999999999996554

>KOG0303|consensus

Probab=99.62  E-value=4e-15  Score=112.02  Aligned_cols=145  Identities=23%  Similarity=0.369  Sum_probs=115.9

Q ss_pred             CCCEEEE---EeCCCcEEEEeC-CCCcEE---EEEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCC----------
Q psy10953         22 DDKYVLS---GSQSGKINLYGV-ETGKLE---QIFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDAN----------   83 (181)
Q Consensus        22 ~g~~l~~---~~~d~~i~~~d~-~~~~~~---~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~----------   83 (181)
                      +.+++|.   ++.-|-..+.-+ ++|+..   ..+..|...+..+.|+|- ...|++|+.|.++.+|.+-          
T Consensus        43 NPkfiAvi~easgGgaf~ViPl~k~Gr~d~~~P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~lte  122 (472)
T KOG0303|consen   43 NPKFVAVIIEASGGGAFLVIPLVKTGRMDASYPLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTE  122 (472)
T ss_pred             CCceEEEEEecCCCcceeecccccccccCCCCCCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCccc
Confidence            5666653   222334444433 345433   345567777888999995 4678999999999999874          


Q ss_pred             -----CCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         84 -----TGHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        84 -----~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                           .+|...|..++|+|.. +.|++++.|..|.+||..+++.+.++.|++.|++++|+-||.++++.+.|+.|++||.
T Consensus       123 pvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dp  202 (472)
T KOG0303|consen  123 PVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDP  202 (472)
T ss_pred             ceEEEeecceeEEEEeecccchhhHhhccCCceEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcC
Confidence                 3577889999999965 6899999999999999999999989999999999999999999999999999999999


Q ss_pred             CCCeeEEEc
Q psy10953        158 KPEEEVEVN  166 (181)
Q Consensus       158 ~~~~~~~~~  166 (181)
                      .+++.+...
T Consensus       203 r~~~~v~e~  211 (472)
T KOG0303|consen  203 RRGTVVSEG  211 (472)
T ss_pred             CCCcEeeec
Confidence            988776544

>KOG1274|consensus

Probab=99.62  E-value=5.1e-14  Score=115.25  Aligned_cols=152  Identities=21%  Similarity=0.283  Sum_probs=125.8

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--------CCCcc
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSS   88 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--------~~~~~   88 (181)
                      .++..++.++++|+.+++|.+|....++....+....-.+..++++.+|++++.|+.|-.|++.+..        .+|..
T Consensus        60 ~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~a  139 (933)
T KOG1274|consen   60 SSIACYSNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDA  139 (933)
T ss_pred             EEEeecccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEEecCCcEEEeecCceeEEEEeccccchheeecccCC
Confidence            3455577799999999999999998887665555444556789999999999999999999999875        36888


Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      .|.++.|+|++++||+.+-||+|++||+.++....++.         ....+..++|+|+|..++..+.|+.|.+|+...
T Consensus       140 pVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~  219 (933)
T KOG1274|consen  140 PVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKG  219 (933)
T ss_pred             ceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCC
Confidence            99999999999999999999999999999876555442         122356789999999999999999999999988


Q ss_pred             CeeEEEcCC
Q psy10953        160 EEEVEVNGG  168 (181)
Q Consensus       160 ~~~~~~~~~  168 (181)
                      ++..-.+++
T Consensus       220 we~~f~Lr~  228 (933)
T KOG1274|consen  220 WELQFKLRD  228 (933)
T ss_pred             ceeheeecc
Confidence            877655554

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=1.4e-13  Score=109.27  Aligned_cols=161  Identities=16%  Similarity=0.176  Sum_probs=106.6

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEE--
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIF--   80 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~--   80 (181)
                      +..+...+...+|||||+.|+..+.+   ..|.+||+.+++...+....+ ......|+|||+.|+. .+.++...+|  
T Consensus       191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g-~~~~~~~SPDG~~la~~~~~~g~~~Iy~~  269 (427)
T PRK02889        191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKG-SNSAPAWSPDGRTLAVALSRDGNSQIYTV  269 (427)
T ss_pred             eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCC-CccceEECCCCCEEEEEEccCCCceEEEE
Confidence            34455567889999999999877653   359999999887655433333 3447899999998875 5667765555  


Q ss_pred             eCCCC-------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEe--cCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         81 DANTG-------HSSWVLSTAFTRDGKFFISASA-DHTVRVWN--FARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        81 d~~~~-------~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d--~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      |+..+       +........|+|||+.++..+. ++...+|.  +.++...............+|||||++++..+.++
T Consensus       270 d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~  349 (427)
T PRK02889        270 NADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLAYISRVG  349 (427)
T ss_pred             ECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEEEEEccC
Confidence            44322       2223456789999998776554 45555554  44443222222222344678999999998777543


Q ss_pred             ---cEEEEeCCCCeeEEEcCC
Q psy10953        151 ---AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 ---~v~i~~~~~~~~~~~~~~  168 (181)
                         .|.+|++.+++...+..+
T Consensus       350 g~~~I~v~d~~~g~~~~lt~~  370 (427)
T PRK02889        350 GAFKLYVQDLATGQVTALTDT  370 (427)
T ss_pred             CcEEEEEEECCCCCeEEccCC
Confidence               599999988766555433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.62  E-value=3e-13  Score=107.40  Aligned_cols=162  Identities=15%  Similarity=0.142  Sum_probs=110.1

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCC--cEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQ---SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDG--IIN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~--~v~   78 (181)
                      ..++.++..+...+|||||+.|+..+.   +..+.+|++.+++...+....+. ...+.|+|||+.|+.. +.++  .++
T Consensus       192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~-~~~~~~SPDG~~La~~~~~~g~~~I~  270 (429)
T PRK03629        192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRH-NGAPAFSPDGSKLAFALSKTGSLNLY  270 (429)
T ss_pred             EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCC-cCCeEECCCCCEEEEEEcCCCCcEEE
Confidence            344555556789999999999986543   45799999998876554433333 3368999999988864 3344  588


Q ss_pred             EEeCCCCC-------cccEEEEEEcCCCCEEEEEeCC-C--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         79 IFDANTGH-------SSWVLSTAFTRDGKFFISASAD-H--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        79 i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +||+.++.       ...+....|+|+|+.++..+.+ +  .|+.+|+.++...............+|+|||++++..+.
T Consensus       271 ~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia~~~~  350 (429)
T PRK03629        271 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  350 (429)
T ss_pred             EEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEc
Confidence            89987542       2345678999999988776653 4  455557766543322223334567899999999887664


Q ss_pred             C---CcEEEEeCCCCeeEEEcC
Q psy10953        149 D---KAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       149 d---~~v~i~~~~~~~~~~~~~  167 (181)
                      +   ..|.+|++.++....+..
T Consensus       351 ~~g~~~I~~~dl~~g~~~~Lt~  372 (429)
T PRK03629        351 NGGQQHIAKQDLATGGVQVLTD  372 (429)
T ss_pred             cCCCceEEEEECCCCCeEEeCC
Confidence            3   358889988776554443

>KOG0322|consensus

Probab=99.60  E-value=7.8e-15  Score=105.45  Aligned_cols=132  Identities=22%  Similarity=0.386  Sum_probs=106.5

Q ss_pred             EEEEeCCCcEEEEeCCCCcEEE----------EEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----------
Q psy10953         26 VLSGSQSGKINLYGVETGKLEQ----------IFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----------   85 (181)
Q Consensus        26 l~~~~~d~~i~~~d~~~~~~~~----------~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----------   85 (181)
                      +++|-.+|++.+||+.++..+-          -...+...+.++.+.+....=++|+.+..+..|.+...          
T Consensus       168 llaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~  247 (323)
T KOG0322|consen  168 LLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEI  247 (323)
T ss_pred             EEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceE
Confidence            4577889999999999873321          22234555678888776555567777778888887521          


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                        ++..+..+.+-||++.+++++-|+.|++|+.++..++..++ |...|++++|+|+...++++|.|.+|-+|++
T Consensus       248 ~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  248 TLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             EecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence              23457788999999999999999999999999999888876 7789999999999999999999999999986

>KOG2106|consensus

Probab=99.60  E-value=1.7e-13  Score=106.13  Aligned_cols=143  Identities=16%  Similarity=0.268  Sum_probs=116.7

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      +-.+.|.++.+|+..+++++++|+++++|+  ..+++-.... .....++.|+|.| .++.|...|...+.|.++.    
T Consensus       367 h~delwgla~hps~~q~~T~gqdk~v~lW~--~~k~~wt~~~-~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~lv~  442 (626)
T KOG2106|consen  367 HGDELWGLATHPSKNQLLTCGQDKHVRLWN--DHKLEWTKII-EDPAECADFHPSG-VVAVGTATGRWFVLDTETQDLVT  442 (626)
T ss_pred             cccceeeEEcCCChhheeeccCcceEEEcc--CCceeEEEEe-cCceeEeeccCcc-eEEEeeccceEEEEecccceeEE
Confidence            333679999999999999999999999999  4555433322 3335689999999 8999999999999998753    


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                         ....+..++|+|+|.+|+.++.|+.|++|-.... .......  +..+|..+.||+|++++.+.+.|-.|..|.
T Consensus       443 ~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~  519 (626)
T KOG2106|consen  443 IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK  519 (626)
T ss_pred             EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence               2567889999999999999999999999987653 3333332  347899999999999999999999999994

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=5.7e-13  Score=106.10  Aligned_cols=157  Identities=18%  Similarity=0.180  Sum_probs=109.3

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCc--EE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQ---SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGI--IN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~--v~   78 (181)
                      ..++.+...+...+|||||+.|+..+.   +..|.+||+.+++...+... ...+....|+|||+.|+. .+.++.  ++
T Consensus       195 ~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~-~g~~~~~~~SPDG~~la~~~~~~g~~~Iy  273 (435)
T PRK05137        195 RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNF-PGMTFAPRFSPDGRKVVMSLSQGGNTDIY  273 (435)
T ss_pred             EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecC-CCcccCcEECCCCCEEEEEEecCCCceEE
Confidence            445556666889999999999987764   46899999998876554333 334457899999998764 455554  77


Q ss_pred             EEeCCCCC-------cccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         79 IFDANTGH-------SSWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        79 i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +||+.++.       ........|+|||+.++..+. ++  .|+++|+..+...........+...+|||||+.++..+.
T Consensus       274 ~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~  353 (435)
T PRK05137        274 TMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQ  353 (435)
T ss_pred             EEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEEEEEEc
Confidence            77876542       233456899999998877664 33  688889876554333233445667889999999987764


Q ss_pred             C---CcEEEEeCCCCee
Q psy10953        149 D---KAVHMYSYKPEEE  162 (181)
Q Consensus       149 d---~~v~i~~~~~~~~  162 (181)
                      +   ..|.+|+...+..
T Consensus       354 ~~~~~~i~~~d~~~~~~  370 (435)
T PRK05137        354 GGGQFSIGVMKPDGSGE  370 (435)
T ss_pred             CCCceEEEEEECCCCce
Confidence            3   3577888755443

>KOG2394|consensus

Probab=99.60  E-value=1.4e-14  Score=112.81  Aligned_cols=155  Identities=23%  Similarity=0.402  Sum_probs=114.9

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEec----CCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCC-----------
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDT----RGKFTLSIAYSTDG-HWIASGALDGIINIFDANT-----------   84 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~-----------   84 (181)
                      |++--+..|=..|.+.+.|-...++..++..    ....+.++.|-|-+ ..++++..+|.+++||...           
T Consensus       183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~  262 (636)
T KOG2394|consen  183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA  262 (636)
T ss_pred             CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence            5566677777778888877655433333322    12346688998854 4566678899999997531           


Q ss_pred             ---C----------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc
Q psy10953         85 ---G----------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP  138 (181)
Q Consensus        85 ---~----------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp  138 (181)
                         +                      -...|+..+|+|||++||+.+.||.++|||+.+.+.+..++ +-+...|++|||
T Consensus       263 ~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSP  342 (636)
T KOG2394|consen  263 LKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSP  342 (636)
T ss_pred             cCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcC
Confidence               0                      01346778999999999999999999999999887776665 557799999999


Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCCcchhh
Q psy10953        139 DGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGEEEEE  175 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~~~~  175 (181)
                      ||++|++|++|--|.+|.+..+..+.---|.+.|...
T Consensus       343 DGKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~  379 (636)
T KOG2394|consen  343 DGKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSV  379 (636)
T ss_pred             CccEEEecCCcceEEEEEeccceEEEeccccccceee
Confidence            9999999999999999999876666555555555443

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.60  E-value=1.2e-13  Score=109.76  Aligned_cols=156  Identities=19%  Similarity=0.289  Sum_probs=105.7

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-CCCcEEEE-
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-LDGIINIF-   80 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~-   80 (181)
                      .+..+...+...+|||||++|+.++.+   ..|++||+.+++...+....+. ...++|+|||++|+.+. .++...+| 
T Consensus       198 ~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~  276 (429)
T PRK01742        198 IVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRGH-NGAPAFSPDGSRLAFASSKDGVLNIYV  276 (429)
T ss_pred             EeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCCc-cCceeECCCCCEEEEEEecCCcEEEEE
Confidence            344555567899999999999887654   3699999998865443322222 23689999999888764 67765555 


Q ss_pred             -eCCCC-------CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC-ceeeeeecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         81 -DANTG-------HSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARR-ENMHTFKHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        81 -d~~~~-------~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~-~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                       |+.++       +...+....|+|||+.++..+ .++...+|++... .......+..  ...+|+|||+.++..+.+ 
T Consensus       277 ~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~--~~~~~SpDG~~ia~~~~~-  353 (429)
T PRK01742        277 MGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG--YSAQISADGKTLVMINGD-  353 (429)
T ss_pred             EECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC--CCccCCCCCCEEEEEcCC-
Confidence             65433       233456789999999766555 5678888876432 1122222322  457899999999888765 


Q ss_pred             cEEEEeCCCCeeEEE
Q psy10953        151 AVHMYSYKPEEEVEV  165 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~  165 (181)
                      .+.+|++.++....+
T Consensus       354 ~i~~~Dl~~g~~~~l  368 (429)
T PRK01742        354 NVVKQDLTSGSTEVL  368 (429)
T ss_pred             CEEEEECCCCCeEEe
Confidence            466699887765433

>KOG1034|consensus

Probab=99.60  E-value=1.1e-13  Score=102.21  Aligned_cols=150  Identities=25%  Similarity=0.467  Sum_probs=114.4

Q ss_pred             CeeeEEEEEEcC----C-CCEEEEEeCCCcEEEEeCCCCc---EEEEEec--CCceEEEEEECCC----CCEEEEeeCCC
Q psy10953         10 GPVDMWNVVFSP----D-DKYVLSGSQSGKINLYGVETGK---LEQIFDT--RGKFTLSIAYSTD----GHWIASGALDG   75 (181)
Q Consensus        10 ~~~~~~~~~~s~----~-g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~--~~~~~~~~~~s~d----~~~l~~~~~d~   75 (181)
                      +...++.++|.+    + .+.+++++ ..++.+|.....-   .++.+..  +....+.++|+-|    .-++|+++.-|
T Consensus        37 ~~~~I~gv~fN~~~~~~e~~vfatvG-~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~yd~~~~~p~la~~G~~G  115 (385)
T KOG1034|consen   37 HNKPIFGVAFNSFLGCDEPQVFATVG-GNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWSYDSNTGNPFLAAGGYLG  115 (385)
T ss_pred             CCCccceeeeehhcCCCCCceEEEeC-CcEEEEEEECCccceeeeeeccCCCCCcceEEEEEEecCCCCCeeEEeeccee
Confidence            335678888874    3 33445554 5588889876433   3333322  2233344555443    24678888999


Q ss_pred             cEEEEeCCC--------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCE
Q psy10953         76 IINIFDANT--------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDK  142 (181)
Q Consensus        76 ~v~i~d~~~--------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~  142 (181)
                      .|++.|+.+        +|...|+.+.+.|+. +++++++.|..|++||+++..++..+.    |.+.|.++.|+++|.+
T Consensus       116 vIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~  195 (385)
T KOG1034|consen  116 VIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDR  195 (385)
T ss_pred             EEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCCCe
Confidence            999999864        577789999999975 799999999999999999999888874    8899999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCC
Q psy10953        143 FVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~  160 (181)
                      |++++-|..+.+|++...
T Consensus       196 i~ScGmDhslk~W~l~~~  213 (385)
T KOG1034|consen  196 IASCGMDHSLKLWRLNVK  213 (385)
T ss_pred             eeccCCcceEEEEecChh
Confidence            999999999999999754

>KOG2106|consensus

Probab=99.60  E-value=2.6e-13  Score=105.22  Aligned_cols=151  Identities=21%  Similarity=0.339  Sum_probs=113.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      +.+.|.++.|.++|. +++|..+|.|.+|+..+.+..+....|..-+.+++.-.+|.+| +|+.|..|..||-.-     
T Consensus       245 ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~~~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r~  322 (626)
T KOG2106|consen  245 EKKFVLCVTFLENGD-VITGDSGGNILIWSKGTNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLRE  322 (626)
T ss_pred             cceEEEEEEEcCCCC-EEeecCCceEEEEeCCCceEEeEeeecCCceEEEEEecCccEe-ecCccceEEecccccccccc
Confidence            346689999999998 5699999999999998888776555777778899999999855 599999999998320     


Q ss_pred             -------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEec-----
Q psy10953         85 -------------------------------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-----  116 (181)
Q Consensus        85 -------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~-----  116 (181)
                                                                 +|......++.+|+..++++++.|+.+++|+-     
T Consensus       323 ~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~~~k~~w  402 (626)
T KOG2106|consen  323 TELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWNDHKLEW  402 (626)
T ss_pred             ccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEccCCceeE
Confidence                                                       11222334677888888888888888888871     


Q ss_pred             ---------------------------------CCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        117 ---------------------------------ARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       117 ---------------------------------~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                                                       .+...+.......++.+++|+|+|.+|+.|+.|+.|++|.+....+
T Consensus       403 t~~~~d~~~~~~fhpsg~va~Gt~~G~w~V~d~e~~~lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~  481 (626)
T KOG2106|consen  403 TKIIEDPAECADFHPSGVVAVGTATGRWFVLDTETQDLVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR  481 (626)
T ss_pred             EEEecCceeEeeccCcceEEEeeccceEEEEecccceeEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc
Confidence                                             1111111111244688999999999999999999999999876543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.59  E-value=3.9e-13  Score=106.98  Aligned_cols=161  Identities=19%  Similarity=0.180  Sum_probs=109.6

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCC--cEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDG--IIN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~--~v~   78 (181)
                      ..++.+...+.+.+|+|||+.|+..+.+   ..|.+||+.+++...+....+ ......|+|||+.++. .+.++  .++
T Consensus       197 ~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~g-~~~~~~~SpDG~~l~~~~s~~g~~~Iy  275 (433)
T PRK04922        197 QTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQRELVASFRG-INGAPSFSPDGRRLALTLSRDGNPEIY  275 (433)
T ss_pred             eEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEEeccCCC-CccCceECCCCCEEEEEEeCCCCceEE
Confidence            3444455557788999999999887643   469999999887655433333 3346899999998764 44454  588


Q ss_pred             EEeCCCCC-------cccEEEEEEcCCCCEEEEEeC-CCc--EEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         79 IFDANTGH-------SSWVLSTAFTRDGKFFISASA-DHT--VRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        79 i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~~--i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +||+.++.       .......+|+|+|+.++..+. ++.  |+++|+.+++..............+|||||++++..+.
T Consensus       276 ~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~Ia~~~~  355 (433)
T PRK04922        276 VMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKIAMVHG  355 (433)
T ss_pred             EEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEEEEEC
Confidence            99987543       222356799999998877664 444  77777766553322222233446899999999887654


Q ss_pred             CC---cEEEEeCCCCeeEEEc
Q psy10953        149 DK---AVHMYSYKPEEEVEVN  166 (181)
Q Consensus       149 d~---~v~i~~~~~~~~~~~~  166 (181)
                      ++   .|.+|++.+++...+.
T Consensus       356 ~~~~~~I~v~d~~~g~~~~Lt  376 (433)
T PRK04922        356 SGGQYRIAVMDLSTGSVRTLT  376 (433)
T ss_pred             CCCceeEEEEECCCCCeEECC
Confidence            32   5899999877665443

>KOG0649|consensus

Probab=99.59  E-value=3.4e-13  Score=96.26  Aligned_cols=144  Identities=19%  Similarity=0.366  Sum_probs=115.5

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc---
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS---   87 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~---   87 (181)
                      -.++..+...|..+-+++++.|+.++-||+++|++...+..|.+.+-++.--.....+++|+.||++++||.++++.   
T Consensus       114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~  193 (325)
T KOG0649|consen  114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSM  193 (325)
T ss_pred             CCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEE
Confidence            34467888898888888888999999999999999999999999888877644455689999999999999986431   


Q ss_pred             ---------------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         88 ---------------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        88 ---------------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                                     .+|.+++-  +..+++||+ ...+.+|.++..++.+.++.+.++..+.|-  .+.++++++.+.|
T Consensus       194 ie~yk~~~~lRp~~g~wigala~--~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F~--~d~vl~~G~g~~v  268 (325)
T KOG0649|consen  194 IEPYKNPNLLRPDWGKWIGALAV--NEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDFV--DDCVLIGGEGNHV  268 (325)
T ss_pred             eccccChhhcCcccCceeEEEec--cCceEEecC-CCceeEEeccCCCceEEEecccceeEeeee--cceEEEeccccce
Confidence                           24555543  445777665 678999999999999999988899888885  4467778888888


Q ss_pred             EEEeCCC
Q psy10953        153 HMYSYKP  159 (181)
Q Consensus       153 ~i~~~~~  159 (181)
                      +-|.+..
T Consensus       269 ~~~~l~G  275 (325)
T KOG0649|consen  269 QSYTLNG  275 (325)
T ss_pred             eeeeecc
Confidence            8888754

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.59  E-value=1.6e-12  Score=100.18  Aligned_cols=162  Identities=32%  Similarity=0.541  Sum_probs=129.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEe
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFD   81 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d   81 (181)
                      ...+..+...+..++|+|+++.+++++. |+.+++|++..++....+..+...+.++.|+|++. .+++++.|+.+.+||
T Consensus       148 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd  227 (466)
T COG2319         148 IRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWD  227 (466)
T ss_pred             EEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEE
Confidence            3456667777889999999998888885 99999999998888887777777788999999998 555558999999998


Q ss_pred             CCCC---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-eeee-ecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         82 ANTG---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-MHTF-KHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        82 ~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      ...+         |.... ...|+|++..+++++.++.+++|+...... +... .|...+.++.++|++..+++++.|+
T Consensus       228 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~d~  306 (466)
T COG2319         228 LSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDG  306 (466)
T ss_pred             CCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEeeCCC
Confidence            6532         22232 227999998888999999999999986654 3333 4677899999999999988888888


Q ss_pred             cEEEEeCCCCeeEEEc
Q psy10953        151 AVHMYSYKPEEEVEVN  166 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~  166 (181)
                      .+.+|+..........
T Consensus       307 ~~~~~~~~~~~~~~~~  322 (466)
T COG2319         307 TVRLWDLETGKLLSSL  322 (466)
T ss_pred             cEEEEEcCCCceEEEe
Confidence            8999988776554433

>KOG1034|consensus

Probab=99.59  E-value=1.4e-14  Score=106.90  Aligned_cols=145  Identities=24%  Similarity=0.412  Sum_probs=116.3

Q ss_pred             eeeEEEEEEcCCCC----EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCC-
Q psy10953         11 PVDMWNVVFSPDDK----YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANT-   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~----~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~-   84 (181)
                      +...+-++|+.|-.    ++|+|+.-|.|++.|+..+++...+..|+..+..+.+.|+. +++++++.|..|++|++.+ 
T Consensus        89 ~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~  168 (385)
T KOG1034|consen   89 DESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD  168 (385)
T ss_pred             CcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC
Confidence            34467888876533    68888999999999999999999999999999999999986 6788999999999999974 


Q ss_pred             ----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee----ee-----------e--------------
Q psy10953         85 ----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM----HT-----------F--------------  125 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~----~~-----------~--------------  125 (181)
                                +|...|.++.|+++|.++++++.|+++++|++...+..    ..           +              
T Consensus       169 ~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~d  248 (385)
T KOG1034|consen  169 VCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTD  248 (385)
T ss_pred             eEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccc
Confidence                      68889999999999999999999999999998632100    00           0              


Q ss_pred             ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953        126 KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       126 ~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      .|...|-|+.|-  |+++++-|.++.|..|..
T Consensus       249 iHrnyVDCvrw~--gd~ilSkscenaI~~w~p  278 (385)
T KOG1034|consen  249 IHRNYVDCVRWF--GDFILSKSCENAIVCWKP  278 (385)
T ss_pred             cccchHHHHHHH--hhheeecccCceEEEEec
Confidence            022333334332  688999999999999987

>KOG0650|consensus

Probab=99.58  E-value=1.3e-13  Score=108.71  Aligned_cols=151  Identities=15%  Similarity=0.290  Sum_probs=106.0

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCE--EEEeeCCCcEEEEeCCC-
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW--IASGALDGIINIFDANT-   84 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~--l~~~~~d~~v~i~d~~~-   84 (181)
                      ..+...+.+|+.+|.|.+|++|+.||++++|.+.+++++..++..+ .+.+++|+|.+..  |+++-.+ .+.+.+..- 
T Consensus       397 rGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~-~I~~vaw~P~~~~~vLAvA~~~-~~~ivnp~~G  474 (733)
T KOG0650|consen  397 RGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQFDS-EIRSVAWNPLSDLCVLAVAVGE-CVLIVNPIFG  474 (733)
T ss_pred             eccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEeecc-eeEEEEecCCCCceeEEEEecC-ceEEeCcccc
Confidence            4566778999999999999999999999999999999998887654 4779999997643  3333222 244443210 


Q ss_pred             --------------------------------------------CCcccEEEEEEcCCCCEEEEEeCC---CcEEEEecC
Q psy10953         85 --------------------------------------------GHSSWVLSTAFTRDGKFFISASAD---HTVRVWNFA  117 (181)
Q Consensus        85 --------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~  117 (181)
                                                                  .|...|..+.|+..|.+|++.+.+   ..|.|+++.
T Consensus       475 ~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLS  554 (733)
T KOG0650|consen  475 DRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLS  554 (733)
T ss_pred             chhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEEEecc
Confidence                                                        123346667788888888777664   346666653


Q ss_pred             C-----------------------------------------Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953        118 R-----------------------------------------RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus       118 ~-----------------------------------------~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      .                                         +..+.... ....|..++++|.|..+++++.|+.+..+
T Consensus       555 K~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~~vRiYdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~Wf  634 (733)
T KOG0650|consen  555 KRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQRSVRIYDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWF  634 (733)
T ss_pred             cccccCchhhcCCceeEEEecCCCceEEEEeccceEEEehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEE
Confidence            2                                         11111111 12246789999999999999999999999


Q ss_pred             eCCCC
Q psy10953        156 SYKPE  160 (181)
Q Consensus       156 ~~~~~  160 (181)
                      |+...
T Consensus       635 Dldls  639 (733)
T KOG0650|consen  635 DLDLS  639 (733)
T ss_pred             EcccC
Confidence            98543

>KOG0649|consensus

Probab=99.58  E-value=2.9e-13  Score=96.59  Aligned_cols=152  Identities=18%  Similarity=0.284  Sum_probs=117.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CcE-EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVET---------GKL-EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~---------~~~-~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ++.=+++|.+++|++|+.+|.|-++.+..         ++. +.-++.|...++.+.|..  ..|++++ ||.|+-|.-+
T Consensus        13 vf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d--~~Lls~g-dG~V~gw~W~   89 (325)
T KOG0649|consen   13 VFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD--DFLLSGG-DGLVYGWEWN   89 (325)
T ss_pred             HHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh--hheeecc-CceEEEeeeh
Confidence            45567899999999999999999998742         222 223356777788999873  3455444 6999988632


Q ss_pred             C---------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCC
Q psy10953         84 T---------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGD  141 (181)
Q Consensus        84 ~---------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~  141 (181)
                      .                     -+...|+++.+.|..+.++.++-|+.++-||+.+++....+. |++.+.+++.-....
T Consensus        90 E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~enSi~~AgGD~~~y~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~  169 (325)
T KOG0649|consen   90 EEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSENSILFAGGDGVIYQVDLEDGRIQREYRGHTDYVHSVVGRNANG  169 (325)
T ss_pred             hhhhhccchhhhhhcCccccCcccCCccceeEeccCCCcEEEecCCeEEEEEEecCCEEEEEEcCCcceeeeeeecccCc
Confidence            1                     012357899999988877777889999999999999988887 889999988744555


Q ss_pred             EEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        142 KFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .+.+|++||++++||.++.+.+.+.+.
T Consensus       170 qilsG~EDGtvRvWd~kt~k~v~~ie~  196 (325)
T KOG0649|consen  170 QILSGAEDGTVRVWDTKTQKHVSMIEP  196 (325)
T ss_pred             ceeecCCCccEEEEeccccceeEEecc
Confidence            788899999999999999988776554

>KOG1523|consensus

Probab=99.58  E-value=1.4e-13  Score=101.31  Aligned_cols=152  Identities=9%  Similarity=0.128  Sum_probs=126.8

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK---LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+......+++.+|++|+..+|.+.+...|.+|.....+   ..+.+..|...+.+++|+|..+.|++++.|...++|..
T Consensus         5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~   84 (361)
T KOG1523|consen    5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQ   84 (361)
T ss_pred             EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCCCceeEccCCCCcccccc
Confidence            344566778999999999999999999999999987665   44666667777889999999999999999999999988


Q ss_pred             CCC-----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee-----eeecCCcEEEEEEccCCCEEEEE
Q psy10953         83 NTG-----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH-----TFKHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        83 ~~~-----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~-----~~~~~~~v~~~~~sp~g~~l~~~  146 (181)
                      ..+           ++....++.|+|.++.+++++.-+.|.||-+.....=.     ..++...|.++.++|++-.+++|
T Consensus        85 ~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaG  164 (361)
T KOG1523|consen   85 PSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAG  164 (361)
T ss_pred             CCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceeccc
Confidence            432           45677899999999999999999999999876654321     22345678999999999999999


Q ss_pred             cCCCcEEEEeC
Q psy10953        147 GEDKAVHMYSY  157 (181)
Q Consensus       147 ~~d~~v~i~~~  157 (181)
                      |.|+..+++..
T Consensus       165 s~D~k~rVfSa  175 (361)
T KOG1523|consen  165 STDGKCRVFSA  175 (361)
T ss_pred             ccCcceeEEEE
Confidence            99999999885

>KOG1445|consensus

Probab=99.58  E-value=1.2e-14  Score=115.37  Aligned_cols=142  Identities=25%  Similarity=0.452  Sum_probs=114.8

Q ss_pred             EcCCCCEEEE--EeCCCcEEEEeCC-CCcEE----EEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEEeCC-------
Q psy10953         19 FSPDDKYVLS--GSQSGKINLYGVE-TGKLE----QIFDTRGKFTLSIAYST-DGHWIASGALDGIINIFDAN-------   83 (181)
Q Consensus        19 ~s~~g~~l~~--~~~d~~i~~~d~~-~~~~~----~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d~~-------   83 (181)
                      |+.+..++|.  ++.-|.|-+|++. .|++-    ..+. .+..+..+.|.| |...|+.+..||.|.+|.+.       
T Consensus       587 fcan~~rvAVPL~g~gG~iai~el~~PGrLPDgv~p~l~-Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~  665 (1012)
T KOG1445|consen  587 FCANNKRVAVPLAGSGGVIAIYELNEPGRLPDGVMPGLF-NGTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPEN  665 (1012)
T ss_pred             eeeccceEEEEecCCCceEEEEEcCCCCCCCcccccccc-cCceeeecccCCCChHHeeecccCceEEEEEeccCCCCcc
Confidence            5566777663  4557899999985 44432    1121 355677899999 66789999999999999874       


Q ss_pred             --------CCCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 --------TGHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 --------~~~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                              +.|...|+.+.|+|- ...|++++.|-+|++||+++.+....+. |.+.|.+++|||+|+.+++.+.|++++
T Consensus       666 ~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~r  745 (1012)
T KOG1445|consen  666 EMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLR  745 (1012)
T ss_pred             cCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEE
Confidence                    246678999999995 5789999999999999999988777665 999999999999999999999999999


Q ss_pred             EEeCCCCe
Q psy10953        154 MYSYKPEE  161 (181)
Q Consensus       154 i~~~~~~~  161 (181)
                      +|+-..++
T Consensus       746 Vy~Prs~e  753 (1012)
T KOG1445|consen  746 VYEPRSRE  753 (1012)
T ss_pred             EeCCCCCC
Confidence            99976543

>KOG0307|consensus

Probab=99.57  E-value=1.4e-14  Score=120.67  Aligned_cols=169  Identities=15%  Similarity=0.246  Sum_probs=125.5

Q ss_pred             eeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEECCCC-CEEEEeeCCCcEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDG-HWIASGALDGIINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i   79 (181)
                      |.+...+...|..+.|++.+. +||+|++||.|.|||+..-+.-...  ......+.+++|...- ..|++++.+|.+.+
T Consensus       109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~i  188 (1049)
T KOG0307|consen  109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVI  188 (1049)
T ss_pred             HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCcee
Confidence            456677888899999999776 8999999999999999753321111  1123456789998754 45778899999999


Q ss_pred             EeCCCCC----------cccEEEEEEcCCCC-EEEEEeCCC---cEEEEecCCCc-eeeee-ecCCcEEEEEEccCC-CE
Q psy10953         80 FDANTGH----------SSWVLSTAFTRDGK-FFISASADH---TVRVWNFARRE-NMHTF-KHADQVWCVCVAPDG-DK  142 (181)
Q Consensus        80 ~d~~~~~----------~~~v~~~~~s~~~~-~l~~~~~d~---~i~v~d~~~~~-~~~~~-~~~~~v~~~~~sp~g-~~  142 (181)
                      ||++...          ...+..++|+|++- .+++++.|.   .|.+||++.-. .+..+ .|...|.++.|.+.+ ++
T Consensus       189 WDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~l  268 (1049)
T KOG0307|consen  189 WDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRL  268 (1049)
T ss_pred             ccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchh
Confidence            9998542          12356899999873 555555543   59999998643 44455 377789999999876 88


Q ss_pred             EEEEcCCCcEEEEeCCCCeeEEEcCCCCcc
Q psy10953        143 FVSVGEDKAVHMYSYKPEEEVEVNGGGGEE  172 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~~~~~~~~~~~~~  172 (181)
                      +++++.|++|.+|+..+++.+....-++.|
T Consensus       269 llSsgkD~~ii~wN~~tgEvl~~~p~~~nW  298 (1049)
T KOG0307|consen  269 LLSSGKDNRIICWNPNTGEVLGELPAQGNW  298 (1049)
T ss_pred             hhcccCCCCeeEecCCCceEeeecCCCCcc
Confidence            999999999999999998877644444333

>KOG1188|consensus

Probab=99.57  E-value=9.5e-14  Score=102.89  Aligned_cols=137  Identities=19%  Similarity=0.335  Sum_probs=105.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEEeCCCC----------Cc-ccE
Q psy10953         24 KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIFDANTG----------HS-SWV   90 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~d~~~~----------~~-~~v   90 (181)
                      ..+|++...+.|++||..+++.+..|..+...+..+.|..  ....+.+++.||.|++||++..          +. ..-
T Consensus        41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f  120 (376)
T KOG1188|consen   41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPF  120 (376)
T ss_pred             eeEEEEecCCeEEEEeccchhhhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcc
Confidence            4688888899999999999999998888776666777765  3456788999999999999753          22 122


Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEecCCCce-eeee--ecCCcEEEEEEccC-CCEEEEEcCCCcEEEEeCCCC
Q psy10953         91 LSTAFTRDGKFFISASA----DHTVRVWNFARREN-MHTF--KHADQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~----d~~i~v~d~~~~~~-~~~~--~~~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      .+++..-+++.+++++.    +-.+.+||.+..+. +..+  .|.+.|++++|+|+ .+.|++||-||-|.+||++..
T Consensus       121 ~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d  198 (376)
T KOG1188|consen  121 ICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKD  198 (376)
T ss_pred             eEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCC
Confidence            34444435667776653    56799999997654 5555  38899999999995 578899999999999998654

>KOG2445|consensus

Probab=99.57  E-value=6.1e-13  Score=97.57  Aligned_cols=157  Identities=16%  Similarity=0.298  Sum_probs=112.3

Q ss_pred             eeeecc-CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--Cc--EEEEEecCCceEEEEEECC--CCCEEEEeeCCCc
Q psy10953          4 ISKINV-GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--GK--LEQIFDTRGKFTLSIAYST--DGHWIASGALDGI   76 (181)
Q Consensus         4 ~~~~~~-~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~~--~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~   76 (181)
                      ++.++. +..-+.++.|.+-|+++|+++.|+++++||.+.  ++  +......|+..+..+.|.+  -|+.+++.+.|++
T Consensus         5 ~~pi~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drt   84 (361)
T KOG2445|consen    5 MAPIDSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRT   84 (361)
T ss_pred             ccccccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCc
Confidence            333443 334468999999999999999999999999642  32  3345556777677777744  5899999999999


Q ss_pred             EEEEeCC----C-------------CCcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCc------eeeeee-----
Q psy10953         77 INIFDAN----T-------------GHSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRE------NMHTFK-----  126 (181)
Q Consensus        77 v~i~d~~----~-------------~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~------~~~~~~-----  126 (181)
                      +.+|.-.    .             ...+.|+++.|.|.  |-.+++++.||.++||+.....      .++.+.     
T Consensus        85 v~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~p  164 (361)
T KOG2445|consen   85 VSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDP  164 (361)
T ss_pred             eeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCC
Confidence            9999742    1             12356889999996  5689999999999999865432      222222     


Q ss_pred             ---cCCcEEEEEEccC---CCEEEEEcCC-----CcEEEEeCCCC
Q psy10953        127 ---HADQVWCVCVAPD---GDKFVSVGED-----KAVHMYSYKPE  160 (181)
Q Consensus       127 ---~~~~v~~~~~sp~---g~~l~~~~~d-----~~v~i~~~~~~  160 (181)
                         +....-|+.+.|.   ..+|++|+.+     +.++||.....
T Consensus       165 p~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~  209 (361)
T KOG2445|consen  165 PGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN  209 (361)
T ss_pred             cccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC
Confidence               3344567788764   4567777755     47888887543

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.56  E-value=1.9e-12  Score=102.35  Aligned_cols=158  Identities=18%  Similarity=0.164  Sum_probs=109.3

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCC--CcEEEE
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALD--GIINIF   80 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d--~~v~i~   80 (181)
                      +..+...+...+|+|||++|+.+..+   ..|++||+.+++....... ......++|+|||+.|+.. +.+  ..+++|
T Consensus       185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~  263 (417)
T TIGR02800       185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASF-PGMNGAPAFSPDGSKLAVSLSKDGNPDIYVM  263 (417)
T ss_pred             eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-CCCccceEECCCCCEEEEEECCCCCccEEEE
Confidence            33334346788999999999877644   4799999998876554433 3334568999999987753 433  358888


Q ss_pred             eCCCCC-------cccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         81 DANTGH-------SSWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        81 d~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      |+.++.       ........|+|+|+.++..+. ++  .|+++|+.+++..............+|+|+|++++.++.++
T Consensus       264 d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~~~~~~~  343 (417)
T TIGR02800       264 DLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIAFVHREG  343 (417)
T ss_pred             ECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEEEEEccC
Confidence            886542       122345789999998776654 33  58888887765433333445567789999999998888765


Q ss_pred             ---cEEEEeCCCCeeEEE
Q psy10953        151 ---AVHMYSYKPEEEVEV  165 (181)
Q Consensus       151 ---~v~i~~~~~~~~~~~  165 (181)
                         .|.+|++.++....+
T Consensus       344 ~~~~i~~~d~~~~~~~~l  361 (417)
T TIGR02800       344 GGFNIAVMDLDGGGERVL  361 (417)
T ss_pred             CceEEEEEeCCCCCeEEc
Confidence               788888877554433

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0290|consensus

Probab=99.56  E-value=1.2e-13  Score=100.55  Aligned_cols=147  Identities=16%  Similarity=0.273  Sum_probs=112.9

Q ss_pred             EEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCc---EEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEeCCCCCcc
Q psy10953         14 MWNVVFS-PDDKYVLSGSQSGKINLYGVETGK---LEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFDANTGHSS   88 (181)
Q Consensus        14 ~~~~~~s-~~g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d~~~~~~~   88 (181)
                      ..+..|. -|-+++.+++-|.++.+||++++.   +...+-.|...+..++|...+ +.|++.+.||.|+++|++.-+.+
T Consensus       153 lTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHS  232 (364)
T KOG0290|consen  153 LTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHS  232 (364)
T ss_pred             ccccccccCCcceeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccc
Confidence            4556665 377889999999999999999863   344555677778999999866 57888999999999999854322


Q ss_pred             -----------cEEEEEEcCC-CCEEEEEeCC-CcEEEEecCCCc-eeeeee-cCCcEEEEEEccC-CCEEEEEcCCCcE
Q psy10953         89 -----------WVLSTAFTRD-GKFFISASAD-HTVRVWNFARRE-NMHTFK-HADQVWCVCVAPD-GDKFVSVGEDKAV  152 (181)
Q Consensus        89 -----------~v~~~~~s~~-~~~l~~~~~d-~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~d~~v  152 (181)
                                 ....++|+++ -+++++-..| ..|.+.|++... ++..+. |...|++++|.|. ...|++++.|..+
T Consensus       233 TIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qa  312 (364)
T KOG0290|consen  233 TIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQA  312 (364)
T ss_pred             eEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceE
Confidence                       2345667764 4677776654 569999998754 455554 8889999999996 4578999999999


Q ss_pred             EEEeCCCC
Q psy10953        153 HMYSYKPE  160 (181)
Q Consensus       153 ~i~~~~~~  160 (181)
                      .+||+.+.
T Consensus       313 liWDl~q~  320 (364)
T KOG0290|consen  313 LIWDLQQM  320 (364)
T ss_pred             EEEecccc
Confidence            99999754

>KOG1063|consensus

Probab=99.56  E-value=1.9e-13  Score=109.14  Aligned_cols=156  Identities=19%  Similarity=0.308  Sum_probs=118.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEE---EecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQI---FDTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~---~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      +.+.+..+...+..++|||||++|++.+.|.++.+|....+. ....   ...|...+....|+|++.+|++++.|++|+
T Consensus       564 ~~~~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~Vk  643 (764)
T KOG1063|consen  564 QVQELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVK  643 (764)
T ss_pred             hhheecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEE
Confidence            445688899999999999999999999999999999875332 2222   334677788999999999999999999999


Q ss_pred             EEeCCCC------------CcccEEEEEEcCC-----CCEEEEEeCCCcEEEEecCCCce---e----------eeeecC
Q psy10953         79 IFDANTG------------HSSWVLSTAFTRD-----GKFFISASADHTVRVWNFARREN---M----------HTFKHA  128 (181)
Q Consensus        79 i~d~~~~------------~~~~v~~~~~s~~-----~~~l~~~~~d~~i~v~d~~~~~~---~----------~~~~~~  128 (181)
                      +|.....            +...|+++++.|-     +..++.|-..|.|.+|.......   .          ..+.+.
T Consensus       644 VW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~  723 (764)
T KOG1063|consen  644 VWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPD  723 (764)
T ss_pred             EEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChH
Confidence            9986532            3456888888772     23667788899999998652110   0          112245


Q ss_pred             CcEEEEEEccC----------CCEEEEEcCCCcEEEEeCC
Q psy10953        129 DQVWCVCVAPD----------GDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       129 ~~v~~~~~sp~----------g~~l~~~~~d~~v~i~~~~  158 (181)
                      ..|+.++|.|.          ...|++|+.|..+++++..
T Consensus       724 ~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D~~vri~nv~  763 (764)
T KOG1063|consen  724 SAVNRLLWRPTCSDDWVEDKEWLNLAVGGDDESVRIFNVD  763 (764)
T ss_pred             HhhheeEeccccccccccccceeEEeeecccceeEEeecc
Confidence            57888999975          2357999999999999864

>KOG1408|consensus

Probab=99.55  E-value=2.2e-13  Score=109.52  Aligned_cols=156  Identities=17%  Similarity=0.259  Sum_probs=126.6

Q ss_pred             eeeeccCeeeEEEEEEcCCC--CEEEEEeCCCcEEEEeCC---CCcEEEE-Ee-cCCceEEEEEECCCCCEEEEeeCCCc
Q psy10953          4 ISKINVGPVDMWNVVFSPDD--KYVLSGSQSGKINLYGVE---TGKLEQI-FD-TRGKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g--~~l~~~~~d~~i~~~d~~---~~~~~~~-~~-~~~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      .+.+..+...+.++.|..+|  ..+++++.|+.|.+-..+   ++.+... .. ....-.+.|+..|..++++++..|..
T Consensus       540 ~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~t~cQDrn  619 (1080)
T KOG1408|consen  540 VQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVVTVCQDRN  619 (1080)
T ss_pred             hhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEEEEecccc
Confidence            34555667778999998877  678899999888755333   1222111 00 11234678999999999999999999


Q ss_pred             EEEEeCCCC-----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEE
Q psy10953         77 INIFDANTG-----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        77 v~i~d~~~~-----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~  144 (181)
                      |++||+..+           |.+....+.++|.|.++++.+.|+++.++|+-+++++.+.. |...|+++-|++|.+.|+
T Consensus       620 irif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~nDCkHlI  699 (1080)
T KOG1408|consen  620 IRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFLNDCKHLI  699 (1080)
T ss_pred             eEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeecccchhhe
Confidence            999999753           45667889999999999999999999999999999998775 888899999999999999


Q ss_pred             EEcCCCcEEEEeCCC
Q psy10953        145 SVGEDKAVHMYSYKP  159 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~  159 (181)
                      +++.|+-|.+|.+..
T Consensus       700 SvsgDgCIFvW~lp~  714 (1080)
T KOG1408|consen  700 SVSGDGCIFVWKLPL  714 (1080)
T ss_pred             eecCCceEEEEECch
Confidence            999999999999854

>KOG2919|consensus

Probab=99.55  E-value=4.4e-13  Score=99.02  Aligned_cols=146  Identities=21%  Similarity=0.347  Sum_probs=114.8

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC------
Q psy10953         14 MWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANTG------   85 (181)
Q Consensus        14 ~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~~------   85 (181)
                      +++++|+|-.. .++.++.-.++-+|.-..+..++++..|+.-+.-++|.+||+.|++|+. |..|-.||++..      
T Consensus       210 isc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~  289 (406)
T KOG2919|consen  210 ISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYA  289 (406)
T ss_pred             eeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhh
Confidence            58899999655 7899999999999988888888888788777889999999999999875 778999999731      


Q ss_pred             ---C---cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 ---H---SSWVLSTAFTRDGKFFISASADHTVRVWNFAR-RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 ---~---~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                         |   ++.-....+.|.+++|++|+.||.|++||++. +..+..+. +.+.++.++++|-=..+++++..   ++|..
T Consensus       290 L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGq---r~f~~  366 (406)
T KOG2919|consen  290 LERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQ---RIFKY  366 (406)
T ss_pred             hhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccccccceecCcccceeeeccCc---eeecC
Confidence               2   22223456678999999999999999999988 55455554 77889999999997677776654   45555


Q ss_pred             CCCee
Q psy10953        158 KPEEE  162 (181)
Q Consensus       158 ~~~~~  162 (181)
                      .+...
T Consensus       367 ~~dD~  371 (406)
T KOG2919|consen  367 PKDDN  371 (406)
T ss_pred             CCccc
Confidence            44433

>PRK03629 tolB translocation protein TolB; Provisional

Probab=99.55  E-value=1.7e-12  Score=103.17  Aligned_cols=152  Identities=17%  Similarity=0.234  Sum_probs=103.2

Q ss_pred             eEEEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC-C--cEEEEeCCCCC
Q psy10953         13 DMWNVVFSPDDKYVLSG-SQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD-G--IINIFDANTGH   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d-~--~v~i~d~~~~~   86 (181)
                      .....+|||||+.|+.. +.++  .|.+||+++++..++..... ......|+|||+.|+..+.+ +  .++.+|+.++.
T Consensus       244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~-~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~  322 (429)
T PRK03629        244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGRS-NNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGA  322 (429)
T ss_pred             CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCCC-CcCceEECCCCCEEEEEeCCCCCceEEEEECCCCC
Confidence            34568999999988754 4444  58899999888766554433 34578999999998876653 3  45555665432


Q ss_pred             -------cccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCc---EE
Q psy10953         87 -------SSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA---VH  153 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~---v~  153 (181)
                             ........|+|+|++++..+.+   ..|++||+.++... .+..........|+|||+.++..+.++.   +.
T Consensus       323 ~~~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~-~Lt~~~~~~~p~~SpDG~~i~~~s~~~~~~~l~  401 (429)
T PRK03629        323 PQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQ-VLTDTFLDETPSIAPNGTMVIYSSSQGMGSVLN  401 (429)
T ss_pred             eEEeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeE-EeCCCCCCCCceECCCCCEEEEEEcCCCceEEE
Confidence                   1234467899999988776543   35888998877533 2222223446789999999998887653   67


Q ss_pred             EEeCCCCeeEEEc
Q psy10953        154 MYSYKPEEEVEVN  166 (181)
Q Consensus       154 i~~~~~~~~~~~~  166 (181)
                      ++++..+.+..+.
T Consensus       402 ~~~~~G~~~~~l~  414 (429)
T PRK03629        402 LVSTDGRFKARLP  414 (429)
T ss_pred             EEECCCCCeEECc
Confidence            7777555454443

>KOG1007|consensus

Probab=99.55  E-value=2.9e-13  Score=98.65  Aligned_cols=149  Identities=21%  Similarity=0.386  Sum_probs=115.9

Q ss_pred             eeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCE-EEEeeCCCcEEEEeCCC--
Q psy10953         11 PVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHW-IASGALDGIINIFDANT--   84 (181)
Q Consensus        11 ~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~-l~~~~~d~~v~i~d~~~--   84 (181)
                      ....++-+|||  ||+.+++.+ |++++.||+++.+....+. .|+..+..+.|.|+.++ |++++.||.|++||.+.  
T Consensus       170 ~~~ftsg~WspHHdgnqv~tt~-d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk  248 (370)
T KOG1007|consen  170 RHSFTSGAWSPHHDGNQVATTS-DSTLQFWDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTK  248 (370)
T ss_pred             cceecccccCCCCccceEEEeC-CCcEEEEEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCC
Confidence            34456778888  788887775 8899999999877665443 57788889999998764 67899999999999874  


Q ss_pred             -------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCC-----------------------C-c-----eeeee-e
Q psy10953         85 -------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFAR-----------------------R-E-----NMHTF-K  126 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~-----------------------~-~-----~~~~~-~  126 (181)
                             +|.-+|.++.|+|.. +++++++.|..|.+|....                       . +     .+.++ .
T Consensus       249 ~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tyde  328 (370)
T KOG1007|consen  249 FPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDE  328 (370)
T ss_pred             ccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccc
Confidence                   577899999999965 6889999999999996421                       0 0     11233 3


Q ss_pred             cCCcEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCC
Q psy10953        127 HADQVWCVCVAP-DGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       127 ~~~~v~~~~~sp-~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      |.+.|++++||. |.-.|++-+.||++.|=+....
T Consensus       329 hEDSVY~~aWSsadPWiFASLSYDGRviIs~V~r~  363 (370)
T KOG1007|consen  329 HEDSVYALAWSSADPWIFASLSYDGRVIISSVPRF  363 (370)
T ss_pred             cccceEEEeeccCCCeeEEEeccCceEEeecCChh
Confidence            788999999986 5566888999999988766543

>KOG1272|consensus

Probab=99.55  E-value=2.4e-14  Score=109.82  Aligned_cols=142  Identities=20%  Similarity=0.358  Sum_probs=120.9

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------   84 (181)
                      .+.-+.|-|..=+|++++..|.++..|+.+|+++..+......+..++-.|-+..+-+|..+|+|.+|....        
T Consensus       211 ~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiL  290 (545)
T KOG1272|consen  211 RVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKIL  290 (545)
T ss_pred             chhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHH
Confidence            355678888888999999999999999999999888777666666789999999999999999999999874        


Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        85 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      .|.+.|.++++.++|++++|.+.|..++|||++....+.++..+.....++||..|  +++.|....|.+|.
T Consensus       291 cH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~~tp~~a~~ls~Sqkg--lLA~~~G~~v~iw~  360 (545)
T KOG1272|consen  291 CHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTYRTPHPASNLSLSQKG--LLALSYGDHVQIWK  360 (545)
T ss_pred             hcCCCcceEEECCCCcEEeecccccceeEeeeccccccceeecCCCcccccccccc--ceeeecCCeeeeeh
Confidence            47899999999999999999999999999999998777766655667788888766  45555566788886

>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins

Probab=99.54  E-value=8.4e-13  Score=94.10  Aligned_cols=107  Identities=22%  Similarity=0.458  Sum_probs=80.8

Q ss_pred             eEEEEEEcCCCCEEEEE--eCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCCCC--
Q psy10953         13 DMWNVVFSPDDKYVLSG--SQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDANTG--   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~--~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~~~--   85 (181)
                      .+.+++|+|+|+.+++.  ..+..|.+||++ ++.+..+.  ......+.|+|+|+++++++.   .|.+.+||.++.  
T Consensus        61 ~I~~~~WsP~g~~favi~g~~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~  137 (194)
T PF08662_consen   61 PIHDVAWSPNGNEFAVIYGSMPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKK  137 (194)
T ss_pred             ceEEEEECcCCCEEEEEEccCCcccEEEcCc-ccEeEeec--CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEE
Confidence            48999999999997644  456799999997 44444443  333457999999999998764   366999999742  


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCceee
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASA------DHTVRVWNFARRENMH  123 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~------d~~i~v~d~~~~~~~~  123 (181)
                          +...+..++|+|+|++++++..      |..++||++. ++.+.
T Consensus       138 i~~~~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~-G~~l~  184 (194)
T PF08662_consen  138 ISTFEHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQ-GRLLY  184 (194)
T ss_pred             eeccccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEec-CeEeE
Confidence                3345789999999999998874      5678889874 44443

>KOG1523|consensus

Probab=99.54  E-value=3.1e-13  Score=99.51  Aligned_cols=155  Identities=15%  Similarity=0.192  Sum_probs=122.5

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeC-CCCcEEE--EEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGV-ETGKLEQ--IFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~-~~~~~~~--~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+...+..++|+|..++|++++.|...++|.. ..++...  .+-..+....++.|+|.++.|++|+.-..+.+|=.
T Consensus        50 tls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~  129 (361)
T KOG1523|consen   50 TLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYY  129 (361)
T ss_pred             ehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEE
Confidence            34445666888999999999999999999999998 5554443  23335666779999999999999999999888854


Q ss_pred             C------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC------------------Cceeeee-ecCCcE
Q psy10953         83 N------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR------------------RENMHTF-KHADQV  131 (181)
Q Consensus        83 ~------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~-~~~~~v  131 (181)
                      +            +...+.|.++.|+|++-+|++|+.|+.+++|...-                  +..+.++ ...+.+
T Consensus       130 E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwv  209 (361)
T KOG1523|consen  130 EQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWV  209 (361)
T ss_pred             ecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCce
Confidence            3            34456789999999999999999999999997421                  1222333 245679


Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ..+.|+|+|..|+=.+.|..+.+-|....
T Consensus       210 h~v~fs~sG~~lawv~Hds~v~~~da~~p  238 (361)
T KOG1523|consen  210 HGVLFSPSGNRLAWVGHDSTVSFVDAAGP  238 (361)
T ss_pred             eeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence            99999999999999999999998886443

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.54  E-value=2.7e-12  Score=98.62  Aligned_cols=146  Identities=15%  Similarity=0.244  Sum_probs=104.3

Q ss_pred             eEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCcEE--EEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCC-C-
Q psy10953         13 DMWNVVFSPDDKYVLSGS-QSGKINLYGVE-TGKLE--QIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANT-G-   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~-~~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~-~-   85 (181)
                      ....++++|++++|++++ .++.|.+|++. ++++.  ......+ ....+.++|+++++++++. ++.+.+|++.. + 
T Consensus        36 ~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~~~-~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~  114 (330)
T PRK11028         36 QVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAAESPLPG-SPTHISTDHQGRFLFSASYNANCVSVSPLDKDGI  114 (330)
T ss_pred             CCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEeeeecCCC-CceEEEECCCCCEEEEEEcCCCeEEEEEECCCCC
Confidence            356789999999987664 57889999986 44442  2222222 2347999999998887654 88999998852 1 


Q ss_pred             ---------CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCceee-------eeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         86 ---------HSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARRENMH-------TFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        86 ---------~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~~~-------~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                               ....+..++++|+|+++++++ .++.|.+||+.+...+.       .......+..++|+|+|++++++..
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~  194 (330)
T PRK11028        115 PVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNE  194 (330)
T ss_pred             CCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEec
Confidence                     112345678999999875555 56899999997633221       1122345678999999999988876


Q ss_pred             -CCcEEEEeCCC
Q psy10953        149 -DKAVHMYSYKP  159 (181)
Q Consensus       149 -d~~v~i~~~~~  159 (181)
                       ++.|.+|++..
T Consensus       195 ~~~~v~v~~~~~  206 (330)
T PRK11028        195 LNSSVDVWQLKD  206 (330)
T ss_pred             CCCEEEEEEEeC
Confidence             89999999974

>KOG1188|consensus

Probab=99.52  E-value=8.2e-13  Score=98.00  Aligned_cols=158  Identities=15%  Similarity=0.264  Sum_probs=118.8

Q ss_pred             eeeeccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc---eEEEEEECCCCCEEEEee----CC
Q psy10953          4 ISKINVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK---FTLSIAYSTDGHWIASGA----LD   74 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~s~d~~~l~~~~----~d   74 (181)
                      +..+-..|..+..+.|..  .+..+.+++.||+|++||++.......+...+.   ...++...-.++.+++|.    .+
T Consensus        63 l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~  142 (376)
T KOG1188|consen   63 LEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRSD  142 (376)
T ss_pred             hheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccCc
Confidence            344555666677888876  466788999999999999997766655443322   222444443567777774    47


Q ss_pred             CcEEEEeCCC----------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCc----eeeeeecCCcEEEEEEccC
Q psy10953         75 GIINIFDANT----------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRE----NMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        75 ~~v~i~d~~~----------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~v~~~~~sp~  139 (181)
                      ..|.+||.+.          .|...|+.+.|+|.. ++|++|+.||-+.+||++...    ....+.+...|.++.|..+
T Consensus       143 A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~~  222 (376)
T KOG1188|consen  143 ASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLSK  222 (376)
T ss_pred             eEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeecC
Confidence            7899999874          377789999999964 799999999999999997542    3445567777999999877


Q ss_pred             C-CEEEEEcCCCcEEEEeCCCCe
Q psy10953        140 G-DKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       140 g-~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      + ++|.+-+......+|++..+.
T Consensus       223 ~ykrI~clTH~Etf~~~ele~~~  245 (376)
T KOG1188|consen  223 KYKRIMCLTHMETFAIYELEDGS  245 (376)
T ss_pred             CcceEEEEEccCceeEEEccCCC
Confidence            6 468888999999999997764

>PRK11028 6-phosphogluconolactonase; Provisional

Probab=99.52  E-value=3.2e-12  Score=98.22  Aligned_cols=146  Identities=11%  Similarity=0.268  Sum_probs=102.8

Q ss_pred             eEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc-EEE----EEe-cCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGS-QSGKINLYGVETGK-LEQ----IFD-TRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANT   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~-~~~----~~~-~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~   84 (181)
                      .+..++++|+|+++++++ .+++|.+||+.+.. +..    ... ..+.....+.|+|+|++++++.. ++.+.+|++..
T Consensus       127 ~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~  206 (330)
T PRK11028        127 GCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKD  206 (330)
T ss_pred             cccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeC
Confidence            356788999999986544 56899999997633 211    011 11233457899999999988765 89999999862


Q ss_pred             --CC----------------cccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCc-e---eeeeecCCcEEEEEEccCCC
Q psy10953         85 --GH----------------SSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRE-N---MHTFKHADQVWCVCVAPDGD  141 (181)
Q Consensus        85 --~~----------------~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~-~---~~~~~~~~~v~~~~~sp~g~  141 (181)
                        +.                ..+...+.++|+|++++++.. ++.|.+|++.... .   +....-....+.++++|+|+
T Consensus       207 ~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~  286 (330)
T PRK11028        207 PHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGK  286 (330)
T ss_pred             CCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCC
Confidence              11                012235789999998888764 6889999986432 1   22222223466889999999


Q ss_pred             EEEEEcC-CCcEEEEeCC
Q psy10953        142 KFVSVGE-DKAVHMYSYK  158 (181)
Q Consensus       142 ~l~~~~~-d~~v~i~~~~  158 (181)
                      +++++.. ++.|.+|++.
T Consensus       287 ~l~va~~~~~~v~v~~~~  304 (330)
T PRK11028        287 YLIAAGQKSHHISVYEID  304 (330)
T ss_pred             EEEEEEccCCcEEEEEEc
Confidence            9988776 8899999885

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.52  E-value=8.1e-12  Score=99.35  Aligned_cols=162  Identities=19%  Similarity=0.157  Sum_probs=107.7

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCC--cEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDG--IIN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~--~v~   78 (181)
                      +.+..+...+...+|||||++|+..+.+   ..|.+||+.+++...+....+ ......|+|||+.|+. .+.++  .++
T Consensus       192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g-~~~~~~~SpDG~~la~~~~~~g~~~Iy  270 (430)
T PRK00178        192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEG-LNGAPAWSPDGSKLAFVLSKDGNPEIY  270 (430)
T ss_pred             eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCC-CcCCeEECCCCCEEEEEEccCCCceEE
Confidence            3344455557888999999999876644   368899999887655443332 2336899999998875 44444  678


Q ss_pred             EEeCCCCCc-------ccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         79 IFDANTGHS-------SWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        79 i~d~~~~~~-------~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      ++|+.++..       .......|+|+|+.++..+. ++  .|+++|+.+++..............+|+|||+.++..+.
T Consensus       271 ~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~~~~~  350 (430)
T PRK00178        271 VMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLVMVHR  350 (430)
T ss_pred             EEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEc
Confidence            889875432       22445789999997766553 33  577888877653322222223345789999999987765


Q ss_pred             C-C--cEEEEeCCCCeeEEEcC
Q psy10953        149 D-K--AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       149 d-~--~v~i~~~~~~~~~~~~~  167 (181)
                      + +  .|.++++.+++...+..
T Consensus       351 ~~~~~~l~~~dl~tg~~~~lt~  372 (430)
T PRK00178        351 QDGNFHVAAQDLQRGSVRILTD  372 (430)
T ss_pred             cCCceEEEEEECCCCCEEEccC
Confidence            3 3  57888888776544443

>KOG1009|consensus

Probab=99.51  E-value=1.3e-13  Score=104.16  Aligned_cols=144  Identities=20%  Similarity=0.360  Sum_probs=111.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC--------C--------CcEEEEEecCCceEEEEEECCCCCE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE--------T--------GKLEQIFDTRGKFTLSIAYSTDGHW   67 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~--------~--------~~~~~~~~~~~~~~~~~~~s~d~~~   67 (181)
                      +..+.-+...+..+.|+|+|.+||+|++++++.+|-..        +        ......+..|...++.++|+||++.
T Consensus        58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~  137 (434)
T KOG1009|consen   58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNF  137 (434)
T ss_pred             eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCCce
Confidence            34556677778999999999999999999999999655        2        1122344456677889999999999


Q ss_pred             EEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--------------
Q psy10953         68 IASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--------------  125 (181)
Q Consensus        68 l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------------  125 (181)
                      +++++-|+.+.+||+..        .|..++..++|.|-++++++-+.|...+.+.+.........              
T Consensus       138 l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e  217 (434)
T KOG1009|consen  138 LVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNERE  217 (434)
T ss_pred             eeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCC
Confidence            99999999999999874        47788999999999999999999987777776432211111              


Q ss_pred             ------ec----CCcEEEEEEccCCCEEEEEc
Q psy10953        126 ------KH----ADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       126 ------~~----~~~v~~~~~sp~g~~l~~~~  147 (181)
                            -|    ..-...++|+|+|..+++.+
T Consensus       218 ~~s~rLfhDeTlksFFrRlsfTPdG~llvtPa  249 (434)
T KOG1009|consen  218 GKSTRLFHDETLKSFFRRLSFTPDGSLLVTPA  249 (434)
T ss_pred             cceeeeeecCchhhhhhhcccCCCCcEEEccc
Confidence                  01    11245689999999998866

>PRK01742 tolB translocation protein TolB; Provisional

Probab=99.49  E-value=3e-12  Score=101.77  Aligned_cols=141  Identities=19%  Similarity=0.238  Sum_probs=96.9

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEE--eCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-CCCcEEEEeCCC--CCc
Q psy10953         14 MWNVVFSPDDKYVLSGS-QSGKINLY--GVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-LDGIINIFDANT--GHS   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~-~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~d~~~--~~~   87 (181)
                      ...++|+|||++|+.++ .++.+.+|  |+.+++..++.. +........|+|||+.|+..+ .++...+|+...  +..
T Consensus       250 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~  328 (429)
T PRK01742        250 NGAPAFSPDGSRLAFASSKDGVLNIYVMGANGGTPSQLTS-GAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGA  328 (429)
T ss_pred             cCceeECCCCCEEEEEEecCCcEEEEEEECCCCCeEeecc-CCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCe
Confidence            34689999999988764 67765555  666676555433 333445789999999877654 567777876532  211


Q ss_pred             ccE----EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         88 SWV----LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        88 ~~v----~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      ..+    ...+|+|+|++++..+.+ .+.+||+.++........ .....+.|+|||+.++.++.++...+|.+
T Consensus       329 ~~l~~~~~~~~~SpDG~~ia~~~~~-~i~~~Dl~~g~~~~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~  400 (429)
T PRK01742        329 SLVGGRGYSAQISADGKTLVMINGD-NVVKQDLTSGSTEVLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQL  400 (429)
T ss_pred             EEecCCCCCccCCCCCCEEEEEcCC-CEEEEECCCCCeEEecCC-CCCCCceECCCCCEEEEEEcCCCceEEEE
Confidence            000    346799999999888765 466699988764322221 23456789999999999998888777765

>KOG0321|consensus

Probab=99.49  E-value=4.6e-13  Score=106.18  Aligned_cols=146  Identities=16%  Similarity=0.324  Sum_probs=109.8

Q ss_pred             EEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcEE------EEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953         15 WNVVFSP---DDKYVLSGSQSGKINLYGVETGKLE------QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus        15 ~~~~~s~---~g~~l~~~~~d~~i~~~d~~~~~~~------~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      +...|++   ....|+.+..||.|.++|.+..+..      ..+..|...+..+.|.|-...|++++.|.+++.||++. 
T Consensus        53 f~~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s  132 (720)
T KOG0321|consen   53 FADSFSAAPNKEHILAVADEDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTS  132 (720)
T ss_pred             ccccccCCCCccceEEEecCCCceeeecchhhhcchhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccc
Confidence            5667765   3446789999999999998755443      33445667788999999556789999999999999863 


Q ss_pred             ---------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCc--------------------eee-------ee-e
Q psy10953         85 ---------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRE--------------------NMH-------TF-K  126 (181)
Q Consensus        85 ---------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~--------------------~~~-------~~-~  126 (181)
                               +|...+.+++|.|... .|++|+.|+.|.|||++-..                    ...       .. .
T Consensus       133 ~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA  212 (720)
T KOG0321|consen  133 RLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKA  212 (720)
T ss_pred             eeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhcccccccc
Confidence                     5778888999999765 88899999999999986311                    000       00 0


Q ss_pred             cCCcEEE---EEEccCCCEEEEEcC-CCcEEEEeCCCC
Q psy10953        127 HADQVWC---VCVAPDGDKFVSVGE-DKAVHMYSYKPE  160 (181)
Q Consensus       127 ~~~~v~~---~~~sp~g~~l~~~~~-d~~v~i~~~~~~  160 (181)
                      +...|.+   +.+..|...|++++. |+.|++||+..-
T Consensus       213 ~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~  250 (720)
T KOG0321|consen  213 ASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKN  250 (720)
T ss_pred             ccCceeeeeEEEEEeccceeeeccCCCcceEEEeeccc
Confidence            1223444   677789999999887 999999999653

>KOG4328|consensus

Probab=99.49  E-value=1.5e-12  Score=99.82  Aligned_cols=151  Identities=16%  Similarity=0.307  Sum_probs=117.1

Q ss_pred             cCeeeEEEEEEcCCCC--EEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEe
Q psy10953          9 VGPVDMWNVVFSPDDK--YVLSGSQSGKINLYGVETGK----LEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFD   81 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~--~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d   81 (181)
                      ....-+++++|+|..+  ++++|...|.|-+||+.+.+    -..++..|+..+.++.|+|.. .++++.+.||++++-|
T Consensus       184 v~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D  263 (498)
T KOG4328|consen  184 VTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQD  263 (498)
T ss_pred             ecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCceeeeee
Confidence            3445578999999665  67888889999999995322    234555677778899999965 6788999999999999


Q ss_pred             CCCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-eeeee-cCCcEEEEEEccCCC-EEEEEcC
Q psy10953         82 ANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-MHTFK-HADQVWCVCVAPDGD-KFVSVGE  148 (181)
Q Consensus        82 ~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~v~~~~~sp~g~-~l~~~~~  148 (181)
                      ++..          .......+.|+.+...++.+..=|...+||++++.. ...+. |...|.+++++|... +|+++|.
T Consensus       264 ~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~  343 (498)
T KOG4328|consen  264 FEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLATASL  343 (498)
T ss_pred             ecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchheeeccc
Confidence            8753          223456678888877777888777999999998654 33333 667899999999754 5899999


Q ss_pred             CCcEEEEeCCC
Q psy10953        149 DKAVHMYSYKP  159 (181)
Q Consensus       149 d~~v~i~~~~~  159 (181)
                      |++++|||++.
T Consensus       344 D~T~kIWD~R~  354 (498)
T KOG4328|consen  344 DQTAKIWDLRQ  354 (498)
T ss_pred             Ccceeeeehhh
Confidence            99999999853

>KOG2919|consensus

Probab=99.47  E-value=3.9e-12  Score=94.10  Aligned_cols=147  Identities=21%  Similarity=0.343  Sum_probs=115.7

Q ss_pred             EEEEEEc-------CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         14 MWNVVFS-------PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG-----KFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        14 ~~~~~~s-------~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +++..|-       |+-.++++.+.+.-|++||.-+|++...+..-.     ....+++|+|||.+|++| ..+.|+++|
T Consensus       107 vydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DGeqlfaG-ykrcirvFd  185 (406)
T KOG2919|consen  107 VYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDGEQLFAG-YKRCIRVFD  185 (406)
T ss_pred             EEEEEeeeccccCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCCCeEeec-ccceEEEee
Confidence            5555553       788899999999999999999999876655321     123489999999998865 466899999


Q ss_pred             CC-CC---------------CcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEE
Q psy10953         82 AN-TG---------------HSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        82 ~~-~~---------------~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l  143 (181)
                      +. .+               ..+.+.+++|+|.. +.+++++....+-+|.-..+.++... .|.+.|+.++|.++|+.|
T Consensus       186 t~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL~~~edGn~l  265 (406)
T KOG2919|consen  186 TSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHLQWCEDGNKL  265 (406)
T ss_pred             ccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeEEeccCcCee
Confidence            83 22               13457788999965 58999998888888877766666555 488899999999999999


Q ss_pred             EEEcC-CCcEEEEeCCCCe
Q psy10953        144 VSVGE-DKAVHMYSYKPEE  161 (181)
Q Consensus       144 ~~~~~-d~~v~i~~~~~~~  161 (181)
                      ++|+. +-.|.+||++...
T Consensus       266 fsGaRk~dkIl~WDiR~~~  284 (406)
T KOG2919|consen  266 FSGARKDDKILCWDIRYSR  284 (406)
T ss_pred             cccccCCCeEEEEeehhcc
Confidence            99996 7799999996543

>PRK04922 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.4e-11  Score=98.09  Aligned_cols=152  Identities=16%  Similarity=0.171  Sum_probs=102.3

Q ss_pred             eEEEEEEcCCCCEEE-EEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCc--EEEEeCCCCC
Q psy10953         13 DMWNVVFSPDDKYVL-SGSQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGI--INIFDANTGH   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~-~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~--v~i~d~~~~~   86 (181)
                      .....+|+|||+.++ +.+.++  .|.+||+.+++..++.. +.......+|+|||++|+..+. ++.  ++++|+.++.
T Consensus       249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~-~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~  327 (433)
T PRK04922        249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTRLTN-HFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGS  327 (433)
T ss_pred             CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEECcc-CCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            345789999999876 445555  59999999888655433 2222346899999998887653 443  6667765442


Q ss_pred             c-------ccEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC---CcEE
Q psy10953         87 S-------SWVLSTAFTRDGKFFISASADH---TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED---KAVH  153 (181)
Q Consensus        87 ~-------~~v~~~~~s~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~~v~  153 (181)
                      .       ......+|+|+|++++..+.++   .|++||+.++... .+.+........|+|||+.++..+.+   ..+.
T Consensus       328 ~~~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~-~Lt~~~~~~~p~~spdG~~i~~~s~~~g~~~L~  406 (433)
T PRK04922        328 AERLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR-TLTPGSLDESPSFAPNGSMVLYATREGGRGVLA  406 (433)
T ss_pred             eEEeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE-ECCCCCCCCCceECCCCCEEEEEEecCCceEEE
Confidence            2       2234679999999888765432   5999999877644 33333334567899999998777653   3577


Q ss_pred             EEeCCCCeeEEEc
Q psy10953        154 MYSYKPEEEVEVN  166 (181)
Q Consensus       154 i~~~~~~~~~~~~  166 (181)
                      +++...+....+.
T Consensus       407 ~~~~~g~~~~~l~  419 (433)
T PRK04922        407 AVSTDGRVRQRLV  419 (433)
T ss_pred             EEECCCCceEEcc
Confidence            7777655444443

>KOG2111|consensus

Probab=99.47  E-value=1.5e-11  Score=90.64  Aligned_cols=145  Identities=19%  Similarity=0.370  Sum_probs=110.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEecCC--ceEEEEEECCCCCEEEE-eeCCCcEEEEeCCC----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDTRG--KFTLSIAYSTDGHWIAS-GALDGIINIFDANT----   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~----   84 (181)
                      ++.++.++++  ++++. ...+|.+|... +-+.++.+....  .-..+++...+...||. |-.-|.|.+-|+..    
T Consensus        96 ~I~~V~l~r~--riVvv-l~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~  172 (346)
T KOG2111|consen   96 EIKAVKLRRD--RIVVV-LENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPN  172 (346)
T ss_pred             ceeeEEEcCC--eEEEE-ecCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcC
Confidence            3566666554  44444 36799999887 445666665432  22334444445556666 55679999999853    


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCc-EEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHT-VRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                            .|.+.|.+++++.+|..+||++..|+ |+|||..++..+.++.   .+..|++++|||+..++++.|.-|++++
T Consensus       173 ~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHi  252 (346)
T KOG2111|consen  173 APSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHI  252 (346)
T ss_pred             CceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEE
Confidence                  36778899999999999999999887 8999999999998886   3457999999999999999999999999


Q ss_pred             EeCCCC
Q psy10953        155 YSYKPE  160 (181)
Q Consensus       155 ~~~~~~  160 (181)
                      +.+...
T Consensus       253 F~l~~~  258 (346)
T KOG2111|consen  253 FSLRDT  258 (346)
T ss_pred             EEeecC
Confidence            998653

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.47  E-value=1.8e-11  Score=97.85  Aligned_cols=158  Identities=19%  Similarity=0.181  Sum_probs=102.1

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCc--EEEEe
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGI--INIFD   81 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~--v~i~d   81 (181)
                      ..++..+....|||||++|+..+.+   ..|.++|+.+++...+....+. .....|+|||+.|+. .+.++.  ++++|
T Consensus       214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~-~~~~~wSPDG~~La~~~~~~g~~~Iy~~d  292 (448)
T PRK04792        214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGI-NGAPRFSPDGKKLALVLSKDGQPEIYVVD  292 (448)
T ss_pred             ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCC-cCCeeECCCCCEEEEEEeCCCCeEEEEEE
Confidence            3344456688999999999876543   2588889988876544332222 236899999998875 455664  77778


Q ss_pred             CCCCC-------cccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC-C
Q psy10953         82 ANTGH-------SSWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED-K  150 (181)
Q Consensus        82 ~~~~~-------~~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~  150 (181)
                      +.++.       .......+|+|||+.++..+. ++  .|+++|+.+++..............+|+|||++++..+.+ +
T Consensus       293 l~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g  372 (448)
T PRK04792        293 IATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIMVNRTNG  372 (448)
T ss_pred             CCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence            76542       223456789999997766553 33  4777787766533221122223457899999998877653 3


Q ss_pred             --cEEEEeCCCCeeEEEc
Q psy10953        151 --AVHMYSYKPEEEVEVN  166 (181)
Q Consensus       151 --~v~i~~~~~~~~~~~~  166 (181)
                        .|.++++.++....+.
T Consensus       373 ~~~I~~~dl~~g~~~~lt  390 (448)
T PRK04792        373 KFNIARQDLETGAMQVLT  390 (448)
T ss_pred             ceEEEEEECCCCCeEEcc
Confidence              4555677666544433

>KOG0307|consensus

Probab=99.47  E-value=2.8e-13  Score=113.07  Aligned_cols=145  Identities=17%  Similarity=0.290  Sum_probs=110.9

Q ss_pred             EEEEEEcCCCCE----EEEEeCCCcEEEEeCCC---CcE---EEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEeC
Q psy10953         14 MWNVVFSPDDKY----VLSGSQSGKINLYGVET---GKL---EQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFDA   82 (181)
Q Consensus        14 ~~~~~~s~~g~~----l~~~~~d~~i~~~d~~~---~~~---~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~   82 (181)
                      ...++|.+.|..    |+.|..||.|.+||...   +.-   +.....|...|..+.|++.+. +|++|+.||.|.+||+
T Consensus        67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDl  146 (1049)
T KOG0307|consen   67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDL  146 (1049)
T ss_pred             ceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEecc
Confidence            578999998887    88999999999999754   222   233445667788999999765 9999999999999999


Q ss_pred             CCCC----------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecC---CcEEEEEEccCCC-EEEEEc
Q psy10953         83 NTGH----------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHA---DQVWCVCVAPDGD-KFVSVG  147 (181)
Q Consensus        83 ~~~~----------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp~g~-~l~~~~  147 (181)
                      ++..          ...|.+++|+..-+ .|++++.++.+.|||++..+.+..+...   ..+..++|+|++. .+++++
T Consensus       147 nn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As  226 (1049)
T KOG0307|consen  147 NKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVAS  226 (1049)
T ss_pred             CCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeeeeec
Confidence            7532          23578889988654 6778888999999999988776666422   3477899999865 466666


Q ss_pred             CCC---cEEEEeCC
Q psy10953        148 EDK---AVHMYSYK  158 (181)
Q Consensus       148 ~d~---~v~i~~~~  158 (181)
                      .|.   .|.+||++
T Consensus       227 ~dd~~PviqlWDlR  240 (1049)
T KOG0307|consen  227 GDDSAPVIQLWDLR  240 (1049)
T ss_pred             CCCCCceeEeeccc
Confidence            543   58999964

>KOG1310|consensus

Probab=99.47  E-value=4.8e-13  Score=104.80  Aligned_cols=151  Identities=21%  Similarity=0.287  Sum_probs=118.5

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCC--CCEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTD--GHWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d--~~~l~~~~~d~~v~i~d~~   83 (181)
                      ++.+..=|.+++|+.||.+|++|++|..+.+||.-..|+++.+.. |..-+.++.|-|.  .+.+++|+.|..|+++|+.
T Consensus        46 L~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lfdl~  125 (758)
T KOG1310|consen   46 LTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLFDLD  125 (758)
T ss_pred             hccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEEecc
Confidence            455666688999999999999999999999999988888877764 5556788999884  5778899999999999986


Q ss_pred             C------------------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCce-------eeee-e-c--CCcEEE
Q psy10953         84 T------------------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARREN-------MHTF-K-H--ADQVWC  133 (181)
Q Consensus        84 ~------------------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~-------~~~~-~-~--~~~v~~  133 (181)
                      .                  .|...|-.++-.|++ ..+-+++.||+++-+|++....       .... . +  --...+
T Consensus       126 ~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lielk~  205 (758)
T KOG1310|consen  126 SSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIELKC  205 (758)
T ss_pred             cccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhheeee
Confidence            3                  244556677888988 7888999999999999987321       0000 0 1  124568


Q ss_pred             EEEccCC-CEEEEEcCCCcEEEEeC
Q psy10953        134 VCVAPDG-DKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       134 ~~~sp~g-~~l~~~~~d~~v~i~~~  157 (181)
                      +.++|.. .+|++|+.|-.+++||.
T Consensus       206 ltisp~rp~~laVGgsdpfarLYD~  230 (758)
T KOG1310|consen  206 LTISPSRPYYLAVGGSDPFARLYDR  230 (758)
T ss_pred             eeecCCCCceEEecCCCchhhhhhh
Confidence            8999964 56788888999999994

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.47  E-value=1.2e-10  Score=90.74  Aligned_cols=165  Identities=21%  Similarity=0.332  Sum_probs=113.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-CCCcEEEEeC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-LDGIINIFDA   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~d~   82 (181)
                      +.++...-..+..+.|+|||+++++++.|+.|.++|+.+++.+..+..... ..++++|+||++++++. ..+.+.++|.
T Consensus        29 ~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~-~~~i~~s~DG~~~~v~n~~~~~v~v~D~  107 (369)
T PF02239_consen   29 VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGN-PRGIAVSPDGKYVYVANYEPGTVSVIDA  107 (369)
T ss_dssp             EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSE-EEEEEE--TTTEEEEEEEETTEEEEEET
T ss_pred             EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCC-cceEEEcCCCCEEEEEecCCCceeEecc
Confidence            444544322256788999999999999999999999999999888776444 46899999999998775 5889999998


Q ss_pred             CCCC---------------cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCcee--eeeecCCcEEEEEEccCCCEEE
Q psy10953         83 NTGH---------------SSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARRENM--HTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        83 ~~~~---------------~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                      ++.+               .+.+.++..+|.+..++..- ..+.|-+.|....+.+  ..+..........|+|++++++
T Consensus       108 ~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgry~~  187 (369)
T PF02239_consen  108 ETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGRYFL  187 (369)
T ss_dssp             TT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSSEEE
T ss_pred             ccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccceee
Confidence            6532               23566777788887555544 4588888898765433  2334455678899999999977


Q ss_pred             EEc-CCCcEEEEeCCCCeeEEEcCCC
Q psy10953        145 SVG-EDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       145 ~~~-~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      ++. .++.|.++|.+++..+....-|
T Consensus       188 va~~~sn~i~viD~~~~k~v~~i~~g  213 (369)
T PF02239_consen  188 VAANGSNKIAVIDTKTGKLVALIDTG  213 (369)
T ss_dssp             EEEGGGTEEEEEETTTTEEEEEEE-S
T ss_pred             ecccccceeEEEeeccceEEEEeecc
Confidence            654 5679999999988777654443

...

>KOG4378|consensus

Probab=99.46  E-value=4.1e-13  Score=104.03  Aligned_cols=144  Identities=21%  Similarity=0.382  Sum_probs=117.3

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC---------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH---------   86 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---------   86 (181)
                      |++......++++|+..++|++||++...+.+.+..|...+.++.+.-...+|++++..|.+.+..+.++.         
T Consensus        84 Cv~~~s~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~~tt~f~~~s  163 (673)
T KOG4378|consen   84 CVACASQSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQKTTTFTIDS  163 (673)
T ss_pred             HHhhhhcceeeeccCcCceeeehhhHHHHHhhhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCccccceecCC
Confidence            33333444889999999999999999655556666777888899998888999999999999999886532         


Q ss_pred             cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCC-EEEEEcCCCcEEEEeCCC
Q psy10953         87 SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGD-KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        87 ~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~-~l~~~~~d~~v~i~~~~~  159 (181)
                      ...|+.+.|+|..+ +|.+++.+|.|.+||.....+...+.  |..+..++||+|.+. .|++.+.|+.|.+||...
T Consensus       164 gqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s  240 (673)
T KOG4378|consen  164 GQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRS  240 (673)
T ss_pred             CCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeeccc
Confidence            23567899999877 66778899999999998887776663  777888999999765 578899999999999864

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.45  E-value=2.2e-11  Score=96.68  Aligned_cols=158  Identities=18%  Similarity=0.165  Sum_probs=100.5

Q ss_pred             eeeEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCC---CcEEEEEecCCceEEEEEECCCCCEEEEee-CCCcEEEE-
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQ-----SGKINLYGVET---GKLEQIFDTRGKFTLSIAYSTDGHWIASGA-LDGIINIF-   80 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~-----d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~-   80 (181)
                      +......+|||||++|+..+.     +..+..|++..   ++..++...........+|+|||+.|+..+ .++...+| 
T Consensus       230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~  309 (428)
T PRK01029        230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYI  309 (428)
T ss_pred             CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEE
Confidence            334456889999999886543     22344467664   333344332222224679999999888765 45644444 


Q ss_pred             -eCCC--C-------CcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953         81 -DANT--G-------HSSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        81 -d~~~--~-------~~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                       ++..  +       ....+....|+|||+.|+..+.+   ..|++||+.+++..........+....|+|||+.|+..+
T Consensus       310 ~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f~~  389 (428)
T PRK01029        310 MQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVYSA  389 (428)
T ss_pred             EECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEEEE
Confidence             4431  1       12345678999999988876543   469999998876543332333567789999999887544


Q ss_pred             C---CCcEEEEeCCCCeeEEEcCC
Q psy10953        148 E---DKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       148 ~---d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .   ...++++++..+....+..+
T Consensus       390 ~~~g~~~L~~vdl~~g~~~~Lt~~  413 (428)
T PRK01029        390 GNSNESELYLISLITKKTRKIVIG  413 (428)
T ss_pred             CCCCCceEEEEECCCCCEEEeecC
Confidence            3   34688888887766555443

>KOG1538|consensus

Probab=99.45  E-value=7.6e-12  Score=100.31  Aligned_cols=154  Identities=18%  Similarity=0.348  Sum_probs=112.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CcE-------EEEEecC----------------------
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET-GKL-------EQIFDTR----------------------   52 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-~~~-------~~~~~~~----------------------   52 (181)
                      .++.+-.+...|++++|+.||+++++|+.|+.+.+|.-+- |-+       ++.....                      
T Consensus        45 llqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK  124 (1081)
T KOG1538|consen   45 LLQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQK  124 (1081)
T ss_pred             cccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhh
Confidence            4667778888899999999999999999999999997542 211       1111000                      


Q ss_pred             -------CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----------CCccc--------------------------
Q psy10953         53 -------GKFTLSIAYSTDGHWIASGALDGIINIFDANT----------GHSSW--------------------------   89 (181)
Q Consensus        53 -------~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----------~~~~~--------------------------   89 (181)
                             ...+.+.+|..||++|+.|..||++.+-+...          +.+..                          
T Consensus       125 ~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT  204 (1081)
T KOG1538|consen  125 SVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT  204 (1081)
T ss_pred             hHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence                   12345788999999999999999999986421          11111                          


Q ss_pred             --------------------EEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         90 --------------------VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        90 --------------------v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                                          ..++++.++|.+++.|+.|+.+++| .+.+-.+.+.. ....||++...|+++.++.|+.
T Consensus       205 LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~f-TR~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq  283 (1081)
T KOG1538|consen  205 LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLF-TRDGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ  283 (1081)
T ss_pred             eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEE-eecCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence                                2245666777877888888888877 34444444443 3347999999999999999999


Q ss_pred             CCcEEEEeC
Q psy10953        149 DKAVHMYSY  157 (181)
Q Consensus       149 d~~v~i~~~  157 (181)
                      ||+|..|++
T Consensus       284 DGTiACyNl  292 (1081)
T KOG1538|consen  284 DGTIACYNL  292 (1081)
T ss_pred             cCeeehhhh
Confidence            999999997

>COG2319 FOG: WD40 repeat [General function prediction only]

Probab=99.44  E-value=1.4e-10  Score=89.35  Aligned_cols=158  Identities=28%  Similarity=0.535  Sum_probs=122.9

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEec-CCceEEEEEE-CCCCC-EEEEeeC-CCcEEEEe
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDT-RGKFTLSIAY-STDGH-WIASGAL-DGIINIFD   81 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~-~~~~~~~~~~-s~d~~-~l~~~~~-d~~v~i~d   81 (181)
                      .......+..+.+.+.+..++.++.|+.+.+|+...+. ....+.. +...+....+ ++++. .++..+. |+.+.+|+
T Consensus        61 ~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~  140 (466)
T COG2319          61 LRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTVKLWD  140 (466)
T ss_pred             eeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccEEEEE
Confidence            34566668899999999999999999999999998776 4444444 2223344555 88887 4554444 99999999


Q ss_pred             CCC---------CCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCC-EEEEEcCC
Q psy10953         82 ANT---------GHSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGD-KFVSVGED  149 (181)
Q Consensus        82 ~~~---------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~-~l~~~~~d  149 (181)
                      ...         .|...+..++|+|+++++++++. ++.+++|+......+..+. |...+.+++++|++. .+++++.|
T Consensus       141 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d  220 (466)
T COG2319         141 LSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSD  220 (466)
T ss_pred             ecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEEecCC
Confidence            874         35667889999999998888885 9999999999866666665 678899999999998 55555889


Q ss_pred             CcEEEEeCCCCeeEE
Q psy10953        150 KAVHMYSYKPEEEVE  164 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~  164 (181)
                      +.+++|+...+..+.
T Consensus       221 ~~i~~wd~~~~~~~~  235 (466)
T COG2319         221 GTIRLWDLSTGKLLR  235 (466)
T ss_pred             CcEEEEECCCCcEEe
Confidence            999999887666555

>KOG3881|consensus

Probab=99.44  E-value=9.8e-12  Score=93.74  Aligned_cols=153  Identities=18%  Similarity=0.334  Sum_probs=119.6

Q ss_pred             eeeeccCeeeEEEEEEcCCCCE-EEEEeCC--CcEEEEeCCCCcEEEEEecCC-----------ceEEEEEECCC--CCE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKY-VLSGSQS--GKINLYGVETGKLEQIFDTRG-----------KFTLSIAYSTD--GHW   67 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~-l~~~~~d--~~i~~~d~~~~~~~~~~~~~~-----------~~~~~~~~s~d--~~~   67 (181)
                      +..++.++. +..+.-+|.... +++|+..  ..+++||++..+  ++++...           .+..++.|-+.  ...
T Consensus       142 l~~la~g~g-~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~--qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~  218 (412)
T KOG3881|consen  142 LIKLATGPG-LYDVRQTDTDPYIVATGGKENINELKIWDLEQSK--QIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYK  218 (412)
T ss_pred             ceeeecCCc-eeeeccCCCCCceEecCchhcccceeeeecccce--eeeeccCCCCccccceeeeeeccceecCCCCCce
Confidence            344444433 456666665555 4568877  789999998774  4554431           23446777776  788


Q ss_pred             EEEeeCCCcEEEEeCCCC---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-ee-cCCcEEEEEE
Q psy10953         68 IASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FK-HADQVWCVCV  136 (181)
Q Consensus        68 l~~~~~d~~v~i~d~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~v~~~~~  136 (181)
                      |+++..-+.+++||.+.+         ....+.+++..|.|+++.++...+.+..||++.++.... +. ..+.+.++-.
T Consensus       219 fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~  298 (412)
T KOG3881|consen  219 FATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHC  298 (412)
T ss_pred             EEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccccCCccCCcceEEE
Confidence            999999999999999743         235678899999999999999999999999999886655 43 5678999999


Q ss_pred             ccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        137 APDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       137 sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +|.+.+++++|.|+.|+|+|.++
T Consensus       299 hp~~~~las~GLDRyvRIhD~kt  321 (412)
T KOG3881|consen  299 HPTHPVLASCGLDRYVRIHDIKT  321 (412)
T ss_pred             cCCCceEEeeccceeEEEeeccc
Confidence            99999999999999999999977

>PRK05137 tolB translocation protein TolB; Provisional

Probab=99.44  E-value=3.1e-11  Score=96.20  Aligned_cols=158  Identities=18%  Similarity=0.200  Sum_probs=105.0

Q ss_pred             eccCeeeEEEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-C--CcEEEE
Q psy10953          7 INVGPVDMWNVVFSPDDKYVL-SGSQSGK--INLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-D--GIINIF   80 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d--~~v~i~   80 (181)
                      +...+..+...+|||||+.|+ +.+.++.  |.+||+.+++..++.. +........|+|||+.|+..+. +  ..++++
T Consensus       241 l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~-~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~  319 (435)
T PRK05137        241 VGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTRLTD-SPAIDTSPSYSPDGSQIVFESDRSGSPQLYVM  319 (435)
T ss_pred             eecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEEccC-CCCccCceeEcCCCCEEEEEECCCCCCeEEEE
Confidence            333444456789999999876 4555554  7777998887755433 3333446899999999887653 3  368888


Q ss_pred             eCCCCC-------cccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC-
Q psy10953         81 DANTGH-------SSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED-  149 (181)
Q Consensus        81 d~~~~~-------~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  149 (181)
                      |+..+.       ...+....|+|+|+.++....+   ..|.+||+..+. ...+.....+....|+|||+.++..+.+ 
T Consensus       320 d~~g~~~~~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~-~~~lt~~~~~~~p~~spDG~~i~~~~~~~  398 (435)
T PRK05137        320 NADGSNPRRISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSG-ERILTSGFLVEGPTWAPNGRVIMFFRQTP  398 (435)
T ss_pred             ECCCCCeEEeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCc-eEeccCCCCCCCCeECCCCCEEEEEEccC
Confidence            876542       2234557899999988876643   358888875543 2333333346678999999998765542 


Q ss_pred             -----CcEEEEeCCCCeeEEEc
Q psy10953        150 -----KAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       150 -----~~v~i~~~~~~~~~~~~  166 (181)
                           ..++++++..+....+.
T Consensus       399 ~~~~~~~L~~~dl~g~~~~~l~  420 (435)
T PRK05137        399 GSGGAPKLYTVDLTGRNEREVP  420 (435)
T ss_pred             CCCCcceEEEEECCCCceEEcc
Confidence                 25777787665554443

>KOG0644|consensus

Probab=99.43  E-value=1.1e-13  Score=112.75  Aligned_cols=113  Identities=23%  Similarity=0.413  Sum_probs=102.4

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      |+.|.++..+...|+|+.|...|.++++|++|..+++|.++++.++.....|...+..++.+.....++++++|..|++|
T Consensus       180 mk~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvW  259 (1113)
T KOG0644|consen  180 MKNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVW  259 (1113)
T ss_pred             HHHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhhhhhhhcccCceEEEE
Confidence            56778888899889999999999999999999999999999999988888888878889999888889999999999999


Q ss_pred             eCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy10953         81 DANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFA  117 (181)
Q Consensus        81 d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~  117 (181)
                      .+..        +|++.|++++|+|-.    +.+.||++++||.+
T Consensus       260 rl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r  300 (1113)
T KOG0644|consen  260 RLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDAR  300 (1113)
T ss_pred             ecCCCchHHHHhccccceeeeccCccc----cCCCCCceEecccc
Confidence            9864        689999999999974    67889999999986

>KOG1524|consensus

Probab=99.42  E-value=1.6e-12  Score=101.65  Aligned_cols=129  Identities=16%  Similarity=0.254  Sum_probs=93.9

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC-----
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN-----   83 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~-----   83 (181)
                      .+...+.+-.|+|||.-|++++.||.|++|. ++|.+...+.-.+..++|++|.|+.+.++....+ .+++=-+.     
T Consensus       102 AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~g~-h~~IKpL~~n~k~  179 (737)
T KOG1524|consen  102 AHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRSTVVQNEESIRCARWAPNSNSIVFCQGG-HISIKPLAANSKI  179 (737)
T ss_pred             hhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHHHhhcCceeEEEEECCCCCceEEecCC-eEEEeecccccce
Confidence            3555567788999999999999999999996 5666554444456778999999998766554332 33333322     


Q ss_pred             ---CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccC
Q psy10953         84 ---TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        84 ---~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~  139 (181)
                         ..|.+-|.++.|++..+.+++|+.|-.-++||......+.+..|..+|++++|.|+
T Consensus       180 i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd  238 (737)
T KOG1524|consen  180 IRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE  238 (737)
T ss_pred             eEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc
Confidence               35888899999999999999999999999999765444444444445555555555

>KOG4227|consensus

Probab=99.41  E-value=1.4e-11  Score=93.41  Aligned_cols=146  Identities=14%  Similarity=0.195  Sum_probs=117.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCC------CCcEEEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVE------TGKLEQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~------~~~~~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      +..+.||.++++|++|++|..+++|.+.      +.+.+++...+. ..+.+++|......+++|..+++|.+-|+++..
T Consensus        59 iNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q  138 (609)
T KOG4227|consen   59 INALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ  138 (609)
T ss_pred             cceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccce
Confidence            4678999999999999999999999873      345566555433 567899999988999999999999999997642


Q ss_pred             ----------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc----eeeeeecCCcEEEEEEccCC-CEEEEEcCCCc
Q psy10953         87 ----------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRE----NMHTFKHADQVWCVCVAPDG-DKFVSVGEDKA  151 (181)
Q Consensus        87 ----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~~~~~v~~~~~sp~g-~~l~~~~~d~~  151 (181)
                                .+.|..+..+|-.+.|++.+.++.|.+||.+...    +++.-..+...+++.|+|.. ..|++.+.-+.
T Consensus       139 si~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G  218 (609)
T KOG4227|consen  139 SIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGG  218 (609)
T ss_pred             eeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCC
Confidence                      2468889999999999999999999999998654    33333466778999999975 45677777789


Q ss_pred             EEEEeCCC
Q psy10953        152 VHMYSYKP  159 (181)
Q Consensus       152 v~i~~~~~  159 (181)
                      +.+|++..
T Consensus       219 ~~~~D~R~  226 (609)
T KOG4227|consen  219 PNVFDRRM  226 (609)
T ss_pred             CCceeecc
Confidence            99999864

>KOG0642|consensus

Probab=99.40  E-value=6.8e-12  Score=98.33  Aligned_cols=150  Identities=21%  Similarity=0.400  Sum_probs=115.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCC------C--cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVET------G--KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--   83 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~------~--~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--   83 (181)
                      +..++|+|-...|++++.|+++++|+++.      .  +.+..|..|...+.|+++++.++++++|+-||.|+.|++.  
T Consensus       297 ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n  376 (577)
T KOG0642|consen  297 IRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPN  376 (577)
T ss_pred             hhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCC
Confidence            45677888889999999999999999922      1  2334566777788899999999999999999999999542  


Q ss_pred             ----------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--------------------------
Q psy10953         84 ----------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--------------------------  121 (181)
Q Consensus        84 ----------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--------------------------  121 (181)
                                      .||...+..+++|+....|++++.||+++.|+.....+                          
T Consensus       377 ~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~  456 (577)
T KOG0642|consen  377 QDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSL  456 (577)
T ss_pred             CCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhh
Confidence                            26778889999999999999999999999998643221                          


Q ss_pred             ------------------eeeee--------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        122 ------------------MHTFK--------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       122 ------------------~~~~~--------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                                        +..+.        ....++-+..+|.+.+.+++..|+.|++++..++..+
T Consensus       457 ~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l  524 (577)
T KOG0642|consen  457 ASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKIL  524 (577)
T ss_pred             hhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccc
Confidence                              00000        0012445666788888888889999999999887654

>KOG1539|consensus

Probab=99.40  E-value=2.6e-11  Score=98.93  Aligned_cols=136  Identities=21%  Similarity=0.385  Sum_probs=119.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-------C-cccEEEEEEc
Q psy10953         25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------H-SSWVLSTAFT   96 (181)
Q Consensus        25 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-------~-~~~v~~~~~s   96 (181)
                      .++.|+.+|.+++|++++++.+..++.....+.++.-+|.-..++.|..+|.|.+++++.+       + -+.|+.++|.
T Consensus       174 KIvvGs~~G~lql~Nvrt~K~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G~ViifNlK~dkil~sFk~d~g~VtslSFr  253 (910)
T KOG1539|consen  174 KIVVGSSQGRLQLWNVRTGKVVYTFQEFFSRITAIEQSPALDVVAIGLENGTVIIFNLKFDKILMSFKQDWGRVTSLSFR  253 (910)
T ss_pred             eEEEeecCCcEEEEEeccCcEEEEecccccceeEeccCCcceEEEEeccCceEEEEEcccCcEEEEEEccccceeEEEec
Confidence            4678999999999999999999999988888888888998899999999999999999865       3 3789999999


Q ss_pred             CCCC-EEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         97 RDGK-FFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        97 ~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      -||. .+++++..|.+.+||+...+.+....  |.+.+..+-|-|..-.+++.+.|+.+++|-.+++
T Consensus       254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~  320 (910)
T KOG1539|consen  254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGEPVLVTAGADNSLKVWVFDSG  320 (910)
T ss_pred             cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCCceEeeccCCCceeEEEeeCC
Confidence            9998 67788888999999999988777765  6678889999999999999999999888877643

>KOG1963|consensus

Probab=99.40  E-value=3.4e-11  Score=98.47  Aligned_cols=161  Identities=18%  Similarity=0.327  Sum_probs=124.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C-c-EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc--
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVET--G-K-LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS--   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~-~-~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~--   87 (181)
                      ..+.++||+++++|+|..||.|.+|.--.  + + ..+.+.-|...+.+++|+++|.+|++|+..+.+.+|.+.+++.  
T Consensus       208 ~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqf  287 (792)
T KOG1963|consen  208 ITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQF  287 (792)
T ss_pred             ceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCccc
Confidence            56789999999999999999999995322  1 1 1244555666788999999999999999999999999987763  


Q ss_pred             -----ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee------------cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         88 -----SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------------HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        88 -----~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------------~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                           +.|..+.+|||+.+.+....|..|.+....+.....++.            ..+-...++++|.-+.++-.+..+
T Consensus       288 LPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g  367 (792)
T KOG1963|consen  288 LPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPG  367 (792)
T ss_pred             ccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCc
Confidence                 468999999999999999999999998765432222221            123356789999888888899999


Q ss_pred             cEEEEeCCCCee---EEEcCCCCcchh
Q psy10953        151 AVHMYSYKPEEE---VEVNGGGGEEEE  174 (181)
Q Consensus       151 ~v~i~~~~~~~~---~~~~~~~~~~~~  174 (181)
                      .|++||+.+...   +.+...+..+++
T Consensus       368 ~vQ~ydl~td~~i~~~~v~~~n~~~~~  394 (792)
T KOG1963|consen  368 HVQFYDLYTDSTIYKLQVCDENYSDGD  394 (792)
T ss_pred             eEEEEeccccceeeeEEEEeecccCCc
Confidence            999999977643   445555555444

>KOG2110|consensus

Probab=99.39  E-value=1.5e-10  Score=86.93  Aligned_cols=159  Identities=18%  Similarity=0.309  Sum_probs=114.1

Q ss_pred             CcceeeeccC---eeeEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC
Q psy10953          1 MKQISKINVG---PVDMWNVVFSPDDKYVLSGS--QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG   75 (181)
Q Consensus         1 ~~~~~~~~~~---~~~~~~~~~s~~g~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~   75 (181)
                      |+.|-.+...   +..+..+++++.+.+++.=+  ..|.|.+||+.+-+....+..|...+.+++|+++|.+||+++..|
T Consensus       116 MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKG  195 (391)
T KOG2110|consen  116 MKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKG  195 (391)
T ss_pred             ceeehhhhccCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCc
Confidence            4444444443   44455556666667888532  358899999998888888888888888999999999999999888


Q ss_pred             c-EEEEeCCCCCc----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc------------------------
Q psy10953         76 I-INIFDANTGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRE------------------------  120 (181)
Q Consensus        76 ~-v~i~d~~~~~~----------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~------------------------  120 (181)
                      + |+++.+..++.          ..|.+++|+|++++|.+.+..++|++|-+....                        
T Consensus       196 TVIRVf~v~~G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sy  275 (391)
T KOG2110|consen  196 TVIRVFSVPEGQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSY  275 (391)
T ss_pred             eEEEEEEcCCccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchhhhhhhhh
Confidence            5 56888866542          357889999999999999999999999764210                        


Q ss_pred             -------------eeeeee--cCCcEEEEEEc--cCCCEEEEEcCCCcEEEEeCCC
Q psy10953        121 -------------NMHTFK--HADQVWCVCVA--PDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       121 -------------~~~~~~--~~~~v~~~~~s--p~g~~l~~~~~d~~v~i~~~~~  159 (181)
                                   .+...+  ..+.-..+.++  +...++..++.||.++.|.+..
T Consensus       276 lps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~  331 (391)
T KOG2110|consen  276 LPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPP  331 (391)
T ss_pred             cchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCC
Confidence                         000001  01111223344  4677888899999999999865

>PRK02889 tolB translocation protein TolB; Provisional

Probab=99.39  E-value=9e-11  Score=93.33  Aligned_cols=147  Identities=18%  Similarity=0.225  Sum_probs=94.5

Q ss_pred             eeeEEEEEEcCCCCEEE-EEeCCCcEEEE--eCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEe--CCC
Q psy10953         11 PVDMWNVVFSPDDKYVL-SGSQSGKINLY--GVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFD--ANT   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~-~~~~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d--~~~   84 (181)
                      +......+|||||+.|+ +.+.++...+|  |+.++...++.. +........|+|||++|+..+. ++...+|.  +..
T Consensus       239 ~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~-~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~  317 (427)
T PRK02889        239 KGSNSAPAWSPDGRTLAVALSRDGNSQIYTVNADGSGLRRLTQ-SSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASG  317 (427)
T ss_pred             CCCccceEECCCCCEEEEEEccCCCceEEEEECCCCCcEECCC-CCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCC
Confidence            33456789999999886 56777776665  455555444322 2222346789999998886553 45555554  433


Q ss_pred             CCc-------ccEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCC---c
Q psy10953         85 GHS-------SWVLSTAFTRDGKFFISASADH---TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDK---A  151 (181)
Q Consensus        85 ~~~-------~~v~~~~~s~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---~  151 (181)
                      +..       ......+|+|+|++++..+.++   .|++||+.+++.. .+.........+|+|||+.|+..+.++   .
T Consensus       318 g~~~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~-~lt~~~~~~~p~~spdg~~l~~~~~~~g~~~  396 (427)
T PRK02889        318 GAAQRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT-ALTDTTRDESPSFAPNGRYILYATQQGGRSV  396 (427)
T ss_pred             CceEEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE-EccCCCCccCceECCCCCEEEEEEecCCCEE
Confidence            221       1234578999999988776554   5999999876543 222223346789999999988877543   3


Q ss_pred             EEEEeCCC
Q psy10953        152 VHMYSYKP  159 (181)
Q Consensus       152 v~i~~~~~  159 (181)
                      +.+.+...
T Consensus       397 l~~~~~~g  404 (427)
T PRK02889        397 LAAVSSDG  404 (427)
T ss_pred             EEEEECCC
Confidence            55555533

>KOG4497|consensus

Probab=99.39  E-value=3.5e-11  Score=89.40  Aligned_cols=125  Identities=19%  Similarity=0.215  Sum_probs=81.3

Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCc-------ccEEEEEEcCCCCEEE
Q psy10953         32 SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTGHS-------SWVLSTAFTRDGKFFI  103 (181)
Q Consensus        32 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~~-------~~v~~~~~s~~~~~l~  103 (181)
                      |+.|.+|++..-+..-.++.......+.+|||||+.+.. ...+-.+.+|.+.+...       ..+...+|+|+|++.+
T Consensus        70 ~~~vqvwsl~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~a  149 (447)
T KOG4497|consen   70 DPKVQVWSLVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCA  149 (447)
T ss_pred             cceEEEEEeecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceee
Confidence            445666666555544444444444567899999977665 66789999999976421       2246678999999876


Q ss_pred             EEeCC-C-----------------------------------cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953        104 SASAD-H-----------------------------------TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       104 ~~~~d-~-----------------------------------~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      -++.. .                                   .+.+||.--...+..+...-.+-.++++|.+++++.|+
T Consensus       150 i~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGs  229 (447)
T KOG4497|consen  150 ILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGS  229 (447)
T ss_pred             eeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeec
Confidence            55532 1                                   23333322222222222334577889999999999999


Q ss_pred             CCCcEEEEe
Q psy10953        148 EDKAVHMYS  156 (181)
Q Consensus       148 ~d~~v~i~~  156 (181)
                      .|+.+++-+
T Consensus       230 yD~~lrvln  238 (447)
T KOG4497|consen  230 YDQMLRVLN  238 (447)
T ss_pred             cchhhhhhc
Confidence            999988755

>KOG2139|consensus

Probab=99.38  E-value=2.3e-11  Score=91.26  Aligned_cols=146  Identities=12%  Similarity=0.192  Sum_probs=113.1

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      .+.++..++|++.-.-++++..|..|++||-.. +....+. .....+.+++|-|-+..-++.+..+-+.+|....    
T Consensus        97 s~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr~gIciW~~s~tln~  175 (445)
T KOG2139|consen   97 SEIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCRAGICIWSDSRTLNA  175 (445)
T ss_pred             hhcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeecceeEEEEcCccccc
Confidence            566778899999766778999999999998766 3333333 3455678999999775544444455688997531    


Q ss_pred             -----------------CCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEE
Q psy10953         85 -----------------GHSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        85 -----------------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~  145 (181)
                                       .-..+|+.++|.+||..+++++. +..|.+||..++..+.... ..+.+.-+.|||||.+|++
T Consensus       176 ~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfa  255 (445)
T KOG2139|consen  176 NRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFA  255 (445)
T ss_pred             ccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEE
Confidence                             01257899999999999999985 5789999999887665553 4567888999999999999


Q ss_pred             EcCCCcEEEEe
Q psy10953        146 VGEDKAVHMYS  156 (181)
Q Consensus       146 ~~~d~~v~i~~  156 (181)
                      +..|+..++|+
T Consensus       256 At~davfrlw~  266 (445)
T KOG2139|consen  256 ATCDAVFRLWQ  266 (445)
T ss_pred             ecccceeeeeh
Confidence            99999999995

>KOG2321|consensus

Probab=99.38  E-value=1.3e-11  Score=97.24  Aligned_cols=155  Identities=13%  Similarity=0.294  Sum_probs=124.5

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-----------CceEEEEEECCCCCEEEEee
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-----------GKFTLSIAYSTDGHWIASGA   72 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----------~~~~~~~~~s~d~~~l~~~~   72 (181)
                      |+.+......+++|.+++-..+|++|+.+|.+.+||-++......+...           ...+.++.|+.+|-.+++|.
T Consensus       168 L~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGt  247 (703)
T KOG2321|consen  168 LNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGT  247 (703)
T ss_pred             ccccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeec
Confidence            3445556566899999999999999999999999999877665544421           12366899999999999999


Q ss_pred             CCCcEEEEeCCCC---------CcccEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCC
Q psy10953         73 LDGIINIFDANTG---------HSSWVLSTAFTRDG--KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGD  141 (181)
Q Consensus        73 ~d~~v~i~d~~~~---------~~~~v~~~~~s~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~  141 (181)
                      .+|.+.+||++..         ...+|..+.|.+.+  ..+++. ....++|||-.+++.+..+.....++.+|+-|++.
T Consensus       248 s~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~asiEpt~~lND~C~~p~sG  326 (703)
T KOG2321|consen  248 STGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPMASIEPTSDLNDFCFVPGSG  326 (703)
T ss_pred             cCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCceeeccccCCcCceeeecCCc
Confidence            9999999999743         23467888888763  345443 35689999999999999998888899999999999


Q ss_pred             EEEEEcCCCcEEEEeCCC
Q psy10953        142 KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~  159 (181)
                      +++++-.+..+..|-+..
T Consensus       327 m~f~Ane~~~m~~yyiP~  344 (703)
T KOG2321|consen  327 MFFTANESSKMHTYYIPS  344 (703)
T ss_pred             eEEEecCCCcceeEEccc
Confidence            999999888888777653

>KOG0270|consensus

Probab=99.37  E-value=3.6e-11  Score=91.98  Aligned_cols=159  Identities=18%  Similarity=0.313  Sum_probs=114.7

Q ss_pred             eeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEEe
Q psy10953          5 SKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIFD   81 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d   81 (181)
                      +.+..+..+|.+++|+| ..+.|++|+.|+++.+.|.+.- ..-..+...+. +..+.|.|.. ..++++..||+|+.+|
T Consensus       280 ~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~-VEkv~w~~~se~~f~~~tddG~v~~~D  358 (463)
T KOG0270|consen  280 SSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGE-VEKVAWDPHSENSFFVSTDDGTVYYFD  358 (463)
T ss_pred             eehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccc-eEEEEecCCCceeEEEecCCceEEeee
Confidence            44556777889999998 4667899999999999999842 22223333333 5678898865 4577788999999999


Q ss_pred             CCC---------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeec---CCcEEEEEEccCCCE-EEEEc
Q psy10953         82 ANT---------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFKH---ADQVWCVCVAPDGDK-FVSVG  147 (181)
Q Consensus        82 ~~~---------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~v~~~~~sp~g~~-l~~~~  147 (181)
                      ++.         .|...|.++.+++.- .++++++.|+.+++|++.....-....|   -+...|.++.|+--+ ++.|+
T Consensus       359 ~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~rl~c~~~~~~~a~~la~GG  438 (463)
T KOG0270|consen  359 IRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLGRLHCFALDPDVAFTLAFGG  438 (463)
T ss_pred             cCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCcccccccccccceeecccCCCcceEEEecC
Confidence            985         367788888888864 4889999999999999876543322222   234556666776555 56666


Q ss_pred             CCCcEEEEeCCCCeeEE
Q psy10953        148 EDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       148 ~d~~v~i~~~~~~~~~~  164 (181)
                      ..+.+++|++.+...++
T Consensus       439 ~k~~~~vwd~~~~~~V~  455 (463)
T KOG0270|consen  439 EKAVLRVWDIFTNSPVR  455 (463)
T ss_pred             ccceEEEeecccChhHH
Confidence            66779999998765543

>KOG1272|consensus

Probab=99.34  E-value=1.5e-11  Score=94.74  Aligned_cols=155  Identities=14%  Similarity=0.235  Sum_probs=118.2

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc----------------------------------
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK----------------------------------   54 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----------------------------------   54 (181)
                      ..+...+.+.++.+|++|+.|+..|++-.+|..+.++...+.....                                  
T Consensus       127 l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Etv~Dv~~LHneq~~AVAQK~y~yvYD~~GtElHCl  206 (545)
T KOG1272|consen  127 LPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEINVMETVRDVTFLHNEQFFAVAQKKYVYVYDNNGTELHCL  206 (545)
T ss_pred             ccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeeehhhhhhhhhhhcchHHHHhhhhceEEEecCCCcEEeeh
Confidence            3445567889999999999999999999999988877554432110                                  


Q ss_pred             ----eEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC--------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q psy10953         55 ----FTLSIAYSTDGHWIASGALDGIINIFDANTGH--------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM  122 (181)
Q Consensus        55 ----~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~--------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~  122 (181)
                          .+..+.|-|-.-+|++++..|.++.-|+.+|.        .+.+..+.-+|-+-.+-.|...|+|.+|.....+++
T Consensus       207 k~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePL  286 (545)
T KOG1272|consen  207 KRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPL  286 (545)
T ss_pred             hhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchH
Confidence                11134444545566777888888888876553        234555666787778888889999999999888877


Q ss_pred             eeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       123 ~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ..+. |.++|.++++.++|+++++.+.|+.++|||++...++
T Consensus       287 vKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql  328 (545)
T KOG1272|consen  287 VKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQL  328 (545)
T ss_pred             HHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccc
Confidence            6654 8999999999999999999999999999999765443

>KOG1240|consensus

Probab=99.34  E-value=1.1e-10  Score=98.82  Aligned_cols=161  Identities=14%  Similarity=0.234  Sum_probs=118.7

Q ss_pred             eeeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceEEEEEECCCCCEEEEeeCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETG-------KLEQIFDTRGKFTLSIAYSTDGHWIASGALDG   75 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~   75 (181)
                      ++.++-+...+..++.++.. .++++|+.||+|++|+++.-       +....+...+..+..+...+.+..+|.++.||
T Consensus      1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred             eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence            45667777777788877655 99999999999999998521       11223333455566788888899999999999


Q ss_pred             cEEEEeCCCC----------------CcccE-EEEEEcCC-CC-EEEEEeCCCcEEEEecCCCceeeeee---cCCcEEE
Q psy10953         76 IINIFDANTG----------------HSSWV-LSTAFTRD-GK-FFISASADHTVRVWNFARRENMHTFK---HADQVWC  133 (181)
Q Consensus        76 ~v~i~d~~~~----------------~~~~v-~~~~~s~~-~~-~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~  133 (181)
                      .|.+.++...                ..+.+ ..-+|... +. .++.+..-+.|..||.+........+   .++.|++
T Consensus      1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred             eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence            9999987531                11222 22234332 23 67778888999999998876665554   4577999


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ++++|.++.++.|...|.+.+||++=+.++.
T Consensus      1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~ 1231 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPIL 1231 (1431)
T ss_pred             EEecCCceEEEEecCCceEEEEEeecCceee
Confidence            9999999999999999999999997655554

>KOG0290|consensus

Probab=99.33  E-value=5.8e-11  Score=86.82  Aligned_cols=148  Identities=11%  Similarity=0.252  Sum_probs=106.3

Q ss_pred             eeccCeeeEEEEEEcCCCCE-EEEEeCCCcEEEEeCCCCcEEEEE-ecC--CceEEEEEECCCC-CEEEE-eeCCCcEEE
Q psy10953          6 KINVGPVDMWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIF-DTR--GKFTLSIAYSTDG-HWIAS-GALDGIINI   79 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~-l~~~~~d~~i~~~d~~~~~~~~~~-~~~--~~~~~~~~~s~d~-~~l~~-~~~d~~v~i   79 (181)
                      .+..+-++|++++|..++.. +|+.+.||.+|+||++.-.-...+ ...  ......++|++.. +++++ +.....|.+
T Consensus       191 QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~i  270 (364)
T KOG0290|consen  191 QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVI  270 (364)
T ss_pred             EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEE
Confidence            45567778999999987664 678999999999999865543332 211  2334467887744 66776 445567889


Q ss_pred             EeCCC---------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCC------ceeeeeecCCcEEEEEEccC-CCE
Q psy10953         80 FDANT---------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARR------ENMHTFKHADQVWCVCVAPD-GDK  142 (181)
Q Consensus        80 ~d~~~---------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~------~~~~~~~~~~~v~~~~~sp~-g~~  142 (181)
                      .|++.         +|...|++++|.|.. .++.+++.|..+.+||+..-      .++..+....+|+.+.|+|. +..
T Consensus       271 LDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~a~~EVNqi~Ws~~~~Dw  350 (364)
T KOG0290|consen  271 LDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYTAGGEVNQIQWSSSQPDW  350 (364)
T ss_pred             EEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhhccceeeeeeecccCCCE
Confidence            99873         588899999999975 58999999999999998652      12333446678999999964 556


Q ss_pred             EEEEcCCCcEEE
Q psy10953        143 FVSVGEDKAVHM  154 (181)
Q Consensus       143 l~~~~~d~~v~i  154 (181)
                      |+.+. ++.+.+
T Consensus       351 iai~~-~kklei  361 (364)
T KOG0290|consen  351 IAICF-GKKLEI  361 (364)
T ss_pred             EEEEe-cCeeeE
Confidence            66555 444444

>KOG0771|consensus

Probab=99.32  E-value=4.1e-11  Score=91.00  Aligned_cols=113  Identities=24%  Similarity=0.406  Sum_probs=90.3

Q ss_pred             EEEEECCCCCEEEEeeCCCcEEEEe-CC-------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-------
Q psy10953         57 LSIAYSTDGHWIASGALDGIINIFD-AN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-------  121 (181)
Q Consensus        57 ~~~~~s~d~~~l~~~~~d~~v~i~d-~~-------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-------  121 (181)
                      ..++|+.+|..+++++.||.+++|+ ..       ..|...|.++.|+|||++|++.+.| ..+||+..++..       
T Consensus       148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~~  226 (398)
T KOG0771|consen  148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTPF  226 (398)
T ss_pred             eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCCc
Confidence            4789999999999999999999999 32       3577889999999999999999999 999999765410       


Q ss_pred             ---------------------e----------eee----ec-------------CCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953        122 ---------------------M----------HTF----KH-------------ADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus       122 ---------------------~----------~~~----~~-------------~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                                           +          ...    .+             ...|.+++.|++|++++.|+-||.|.
T Consensus       227 ~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVa  306 (398)
T KOG0771|consen  227 SKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVA  306 (398)
T ss_pred             ccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEE
Confidence                                 0          000    00             12578999999999999999999999


Q ss_pred             EEeCCCCeeEEEcCCCC
Q psy10953        154 MYSYKPEEEVEVNGGGG  170 (181)
Q Consensus       154 i~~~~~~~~~~~~~~~~  170 (181)
                      +++...-+.+......|
T Consensus       307 i~~~~~lq~~~~vk~aH  323 (398)
T KOG0771|consen  307 IYDAKSLQRLQYVKEAH  323 (398)
T ss_pred             EEEeceeeeeEeehhhh
Confidence            99988776665554443

>KOG1524|consensus

Probab=99.31  E-value=4.3e-11  Score=93.82  Aligned_cols=132  Identities=14%  Similarity=0.265  Sum_probs=109.5

Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-------CCcccEEEEEEcC
Q psy10953         25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-------GHSSWVLSTAFTR   97 (181)
Q Consensus        25 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-------~~~~~v~~~~~s~   97 (181)
                      .++.++.||.+.+.+ +.++....+..|...+.+-.|+|||.-|++++.||.|++|....       .....|.+++|.|
T Consensus        77 ~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p  155 (737)
T KOG1524|consen   77 TLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAP  155 (737)
T ss_pred             eEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECC
Confidence            577888899999885 56777777888888888899999999999999999999998532       2345799999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +.+.++-+. .+.+.+=.++....+..++ |.+-|.++.|+|..+.+++|++|-..++||-.
T Consensus       156 ~S~~vl~c~-g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~  216 (737)
T KOG1524|consen  156 NSNSIVFCQ-GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ  216 (737)
T ss_pred             CCCceEEec-CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence            987555443 4578888887777777776 77778999999999999999999999999963

>KOG2321|consensus

Probab=99.30  E-value=2.9e-10  Score=89.78  Aligned_cols=161  Identities=17%  Similarity=0.285  Sum_probs=111.7

Q ss_pred             eeeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcE--EEEEecC--------Cc-------------------------
Q psy10953         11 PVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKL--EQIFDTR--------GK-------------------------   54 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~--~~~~~~~--------~~-------------------------   54 (181)
                      |.-+..|..+|||+|+ |+|.....|++||+..-.+  .+.+...        .+                         
T Consensus        51 p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy~~  130 (703)
T KOG2321|consen   51 PTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHYRT  130 (703)
T ss_pred             ccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeeeee
Confidence            3336789999999997 5777888999999864322  1111110        00                         


Q ss_pred             ----eEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q psy10953         55 ----FTLSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM  122 (181)
Q Consensus        55 ----~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~  122 (181)
                          +-..++++.-..=|+.++....|+-+++..|        ....++.+..++-..+|++|+.+|.|.+||.+.....
T Consensus       131 RIP~~GRDm~y~~~scDly~~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv  210 (703)
T KOG2321|consen  131 RIPKFGRDMKYHKPSCDLYLVGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRV  210 (703)
T ss_pred             ecCcCCccccccCCCccEEEeecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhhhhh
Confidence                0012222221112334444456777777654        2356788999999999999999999999999987655


Q ss_pred             eeee-------cCC-----cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCCc
Q psy10953        123 HTFK-------HAD-----QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGE  171 (181)
Q Consensus       123 ~~~~-------~~~-----~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  171 (181)
                      ..+.       +++     .|+++.|+.+|-.+++|..+|.|.+||+...+++.+..++.+
T Consensus       211 ~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e  271 (703)
T KOG2321|consen  211 GTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYE  271 (703)
T ss_pred             eeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCc
Confidence            5443       222     389999999999999999999999999999998888877643

>PRK00178 tolB translocation protein TolB; Provisional

Probab=99.30  E-value=7.5e-10  Score=88.11  Aligned_cols=151  Identities=15%  Similarity=0.201  Sum_probs=97.8

Q ss_pred             EEEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEEEEeCCCCCc
Q psy10953         14 MWNVVFSPDDKYVLS-GSQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IINIFDANTGHS   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~i~d~~~~~~   87 (181)
                      ....+|||||+.|+. .+.++  .|.++|+.+++...+... ........|+|||+.++..+. ++  .++++|+.++..
T Consensus       245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~lt~~-~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~  323 (430)
T PRK00178        245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSRVTNH-PAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRA  323 (430)
T ss_pred             cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEEcccC-CCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            456899999998874 44444  688889998876654332 222346789999998876553 33  577777765432


Q ss_pred             c-------cEEEEEEcCCCCEEEEEeCC-C--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC---CcEEE
Q psy10953         88 S-------WVLSTAFTRDGKFFISASAD-H--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED---KAVHM  154 (181)
Q Consensus        88 ~-------~v~~~~~s~~~~~l~~~~~d-~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---~~v~i  154 (181)
                      .       ......|+|+|++++..+.+ +  .|.+||+.++... .+..........|+|||+.++..+.+   ..+.+
T Consensus       324 ~~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~-~lt~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~  402 (430)
T PRK00178        324 ERVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR-ILTDTSLDESPSVAPNGTMLIYATRQQGRGVLML  402 (430)
T ss_pred             EEeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE-EccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            1       22346899999988776643 2  5888998876532 22222223356899999998777643   24667


Q ss_pred             EeCCCCeeEEEc
Q psy10953        155 YSYKPEEEVEVN  166 (181)
Q Consensus       155 ~~~~~~~~~~~~  166 (181)
                      ++...+....+.
T Consensus       403 ~~~~g~~~~~l~  414 (430)
T PRK00178        403 VSINGRVRLPLP  414 (430)
T ss_pred             EECCCCceEECc
Confidence            777544443433

>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB

Probab=99.30  E-value=7.8e-10  Score=87.50  Aligned_cols=145  Identities=18%  Similarity=0.235  Sum_probs=97.3

Q ss_pred             eEEEEEEcCCCCEEEE-EeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEEEEeCCCCC
Q psy10953         13 DMWNVVFSPDDKYVLS-GSQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IINIFDANTGH   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~-~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~i~d~~~~~   86 (181)
                      ....++|+|||+.|+. .+.++  .|.+||+.+++...+... ........|+|||++|+..+. .+  .++++|+.++.
T Consensus       235 ~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~  313 (417)
T TIGR02800       235 MNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTRLTNG-PGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGE  313 (417)
T ss_pred             CccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEECCCC-CCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCC
Confidence            3456899999998764 44443  588899988876555432 222335789999998876554 33  57778876543


Q ss_pred             -------cccEEEEEEcCCCCEEEEEeCCC---cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCC---cEE
Q psy10953         87 -------SSWVLSTAFTRDGKFFISASADH---TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDK---AVH  153 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~~l~~~~~d~---~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~---~v~  153 (181)
                             ...+....|+|+|++++..+.++   .|.+||+.++.... +.........+|+|+|+.|+..+.++   .++
T Consensus       314 ~~~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~~~~~p~~spdg~~l~~~~~~~~~~~l~  392 (417)
T TIGR02800       314 VRRLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERV-LTDTGLDESPSFAPNGRMILYATTRGGRGVLG  392 (417)
T ss_pred             EEEeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEE-ccCCCCCCCceECCCCCEEEEEEeCCCcEEEE
Confidence                   23345678999999988888765   78999988754322 22222344568999999988877643   355


Q ss_pred             EEeCCC
Q psy10953        154 MYSYKP  159 (181)
Q Consensus       154 i~~~~~  159 (181)
                      +.+...
T Consensus       393 ~~~~~g  398 (417)
T TIGR02800       393 LVSTDG  398 (417)
T ss_pred             EEECCC
Confidence            555443

The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.

>KOG0650|consensus

Probab=99.30  E-value=7.6e-11  Score=93.36  Aligned_cols=150  Identities=15%  Similarity=0.244  Sum_probs=119.8

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ....+..+..+.|+..|.||++...+   ..|.++++...+...-|......+..+.|+|...+|+.+.. ..|++||+.
T Consensus       517 ~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq-~~vRiYdL~  595 (733)
T KOG0650|consen  517 VIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQ-RSVRIYDLS  595 (733)
T ss_pred             EEecCCccceeeeecCCceEEEeccCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEec-cceEEEehh
Confidence            34567778999999999999987664   46888888765544444445556778999999888876664 479999986


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE-NMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .+        -..++..++.+|.|..|+.++.|+.+.+||+.... +..++. |...+++++|++.-..|++|+.|+.+.
T Consensus       596 kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdDgtv~  675 (733)
T KOG0650|consen  596 KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDDGTVI  675 (733)
T ss_pred             HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCCCcEE
Confidence            43        24578899999999999999999999999998654 344444 778899999999999999999999999


Q ss_pred             EEeC
Q psy10953        154 MYSY  157 (181)
Q Consensus       154 i~~~  157 (181)
                      ++.-
T Consensus       676 Vfhg  679 (733)
T KOG0650|consen  676 VFHG  679 (733)
T ss_pred             EEee
Confidence            8873

>KOG1587|consensus

Probab=99.29  E-value=1.5e-10  Score=93.55  Aligned_cols=150  Identities=18%  Similarity=0.248  Sum_probs=108.4

Q ss_pred             CeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEE--E----EEecCCceEEEEEECCCC--CEEEEeeCCCcEEEE
Q psy10953         10 GPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLE--Q----IFDTRGKFTLSIAYSTDG--HWIASGALDGIINIF   80 (181)
Q Consensus        10 ~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~--~----~~~~~~~~~~~~~~s~d~--~~l~~~~~d~~v~i~   80 (181)
                      .+..+.++.|+| +..+++.|+.+|.|.+||++.+...  .    ....|...+..+.|-.+-  .-|++++.||.|..|
T Consensus       241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W  320 (555)
T KOG1587|consen  241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW  320 (555)
T ss_pred             cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence            344578899998 5667788999999999999866542  1    122345556667775543  449999999999999


Q ss_pred             eCCC-----------------------------------------------------------------------CCccc
Q psy10953         81 DANT-----------------------------------------------------------------------GHSSW   89 (181)
Q Consensus        81 d~~~-----------------------------------------------------------------------~~~~~   89 (181)
                      +++.                                                                       .|.+.
T Consensus       321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~  400 (555)
T KOG1587|consen  321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP  400 (555)
T ss_pred             eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence            8531                                                                       02245


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecC-CCceeeeee-cCCcEEEEEEccCC-CEEEEEcCCCcEEEEeCCC
Q psy10953         90 VLSTAFTRDGKFFISASADHTVRVWNFA-RRENMHTFK-HADQVWCVCVAPDG-DKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d~~i~v~d~~-~~~~~~~~~-~~~~v~~~~~sp~g-~~l~~~~~d~~v~i~~~~~  159 (181)
                      |..+.++|-+..++..+-|.++++|... ...++..+. +.+.+.+++|||.- ..|+++..+|.+.+||+..
T Consensus       401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~  473 (555)
T KOG1587|consen  401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQ  473 (555)
T ss_pred             eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhc
Confidence            6778899987655544449999999877 555555554 56669999999975 4567777899999999843

>KOG1517|consensus

Probab=99.29  E-value=1.4e-10  Score=97.09  Aligned_cols=144  Identities=15%  Similarity=0.249  Sum_probs=107.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEEEEEE-CCCCCEEEEeeCCCcEEEEeCCC---------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTLSIAY-STDGHWIASGALDGIINIFDANT---------   84 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~-s~d~~~l~~~~~d~~v~i~d~~~---------   84 (181)
                      -++|-....+|+++++-..|++||....+...-+..... .+..++- .+.|+.+++|-.||.+++||.+.         
T Consensus      1170 v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~ 1249 (1387)
T KOG1517|consen 1170 VVDWQQQSGHLLVTGDVRSIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCV 1249 (1387)
T ss_pred             eeehhhhCCeEEecCCeeEEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCcccccee
Confidence            356777777777877789999999988877766554322 2333322 22478999999999999999863         


Q ss_pred             --CCccc--EEEEEEcCCCC-EEEEEeCCCcEEEEecCCCcee--eeee----cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         85 --GHSSW--VLSTAFTRDGK-FFISASADHTVRVWNFARRENM--HTFK----HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        85 --~~~~~--v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~--~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                        .|...  |..+.+.++|- .|++++.+|.|++||++.....  .++.    ..+..+++..++....+++|+. +.|.
T Consensus      1250 ~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ik 1328 (1387)
T KOG1517|consen 1250 YREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIK 1328 (1387)
T ss_pred             ecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEE
Confidence              34444  88999999875 6999999999999999974221  1221    2335899999999999999998 9999


Q ss_pred             EEeCCCC
Q psy10953        154 MYSYKPE  160 (181)
Q Consensus       154 i~~~~~~  160 (181)
                      ||+....
T Consensus      1329 Iy~~~G~ 1335 (1387)
T KOG1517|consen 1329 IYSLSGE 1335 (1387)
T ss_pred             EEecChh
Confidence            9999543

>PRK01029 tolB translocation protein TolB; Provisional

Probab=99.27  E-value=1.3e-09  Score=86.71  Aligned_cols=160  Identities=16%  Similarity=0.174  Sum_probs=98.7

Q ss_pred             eccCeeeEEEEEEcCCCCEE--E-EEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC----c
Q psy10953          7 INVGPVDMWNVVFSPDDKYV--L-SGSQS--GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG----I   76 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l--~-~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~----~   76 (181)
                      ++.+......-+|||||+.+  + +...+  ..|.+.++.+++..++....+. .....|||||+.|+..+. +|    .
T Consensus       180 lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~lt~~~g~-~~~p~wSPDG~~Laf~s~~~g~~di~  258 (428)
T PRK01029        180 LTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKILALQGN-QLMPTFSPRKKLLAFISDRYGNPDLF  258 (428)
T ss_pred             cccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEeecCCCC-ccceEECCCCCEEEEEECCCCCccee
Confidence            44444445667899999863  2 33333  3577778888876655443333 346899999998886542 22    2


Q ss_pred             EEEEeCCCCC-----------cccEEEEEEcCCCCEEEEEe-CCCc--EEEEecCC-Cceeeeee-cCCcEEEEEEccCC
Q psy10953         77 INIFDANTGH-----------SSWVLSTAFTRDGKFFISAS-ADHT--VRVWNFAR-RENMHTFK-HADQVWCVCVAPDG  140 (181)
Q Consensus        77 v~i~d~~~~~-----------~~~v~~~~~s~~~~~l~~~~-~d~~--i~v~d~~~-~~~~~~~~-~~~~v~~~~~sp~g  140 (181)
                      +..|++..+.           ........|+|||+.|+..+ .++.  ++++++.. +.....+. ....+...+|||||
T Consensus       259 ~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG  338 (428)
T PRK01029        259 IQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAWSPDG  338 (428)
T ss_pred             EEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeECCCC
Confidence            3336654311           11234578999999777665 4565  44445432 22223232 33456788999999


Q ss_pred             CEEEEEcCC---CcEEEEeCCCCeeEEEcC
Q psy10953        141 DKFVSVGED---KAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       141 ~~l~~~~~d---~~v~i~~~~~~~~~~~~~  167 (181)
                      +.|+..+.+   ..|.+|++.+++...+..
T Consensus       339 ~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~  368 (428)
T PRK01029        339 KKIAFCSVIKGVRQICVYDLATGRDYQLTT  368 (428)
T ss_pred             CEEEEEEcCCCCcEEEEEECCCCCeEEccC
Confidence            998876643   368999998776655443

>KOG1963|consensus

Probab=99.25  E-value=6.5e-10  Score=91.17  Aligned_cols=148  Identities=20%  Similarity=0.278  Sum_probs=113.0

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-E--Ee-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--C---
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ-I--FD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--G---   85 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~-~--~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--~---   85 (181)
                      ..+.+++.|......- +..+.+|......... .  .. .|...+.+.++||.+++++++..||.|.+|.--.  .   
T Consensus       164 ~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~  242 (792)
T KOG1963|consen  164 KSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKHTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSE  242 (792)
T ss_pred             ccEEEcCCceEEEEEE-eeeEEEEEecccceeeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEeccccccccc
Confidence            5677788887765554 4577788877644111 0  00 1223346789999999999999999999996432  1   


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                             |...|++++|+++|.+|++|+.++.+.+|.+.+++....-+....|..+.+|||+...+...+|+.|++....
T Consensus       243 t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~  322 (792)
T KOG1963|consen  243 TCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS  322 (792)
T ss_pred             cceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence                   4567999999999999999999999999999998833222366789999999999999999999999998885


Q ss_pred             CCeeE
Q psy10953        159 PEEEV  163 (181)
Q Consensus       159 ~~~~~  163 (181)
                      .....
T Consensus       323 dl~~k  327 (792)
T KOG1963|consen  323 DLEIK  327 (792)
T ss_pred             chhhh
Confidence            54433

>KOG2139|consensus

Probab=99.25  E-value=9.8e-10  Score=82.64  Aligned_cols=153  Identities=14%  Similarity=0.292  Sum_probs=106.4

Q ss_pred             eeeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      -..|.++.|.+||..+++++. |..|++||..+++...+.......+.-+.|||||.+|+++..|+..++|.....    
T Consensus       195 h~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~e  274 (445)
T KOG2139|consen  195 HNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKE  274 (445)
T ss_pred             CceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceec
Confidence            356899999999999998886 568999999999888776333333446899999999999999999999955321    


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC--CCc-------------eeeeee----------cCCcEEEEEE
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASADHTVRVWNFA--RRE-------------NMHTFK----------HADQVWCVCV  136 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~--~~~-------------~~~~~~----------~~~~v~~~~~  136 (181)
                          -.++|....|+|.|++|+.++. +.-.+|.+.  ...             .+..+.          ..+++.++++
T Consensus       275 rw~lgsgrvqtacWspcGsfLLf~~s-gsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~law  353 (445)
T KOG2139|consen  275 RWILGSGRVQTACWSPCGSFLLFACS-GSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAW  353 (445)
T ss_pred             ceeccCCceeeeeecCCCCEEEEEEc-CCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeE
Confidence                1347888899999996554442 233344321  100             011110          1356889999


Q ss_pred             ccCCCEEEEEcCCCc--------EEEEeCCCCeeEE
Q psy10953        137 APDGDKFVSVGEDKA--------VHMYSYKPEEEVE  164 (181)
Q Consensus       137 sp~g~~l~~~~~d~~--------v~i~~~~~~~~~~  164 (181)
                      .|.|.++++.-..+.        |.+|+......++
T Consensus       354 DpsGeyLav~fKg~~~v~~~k~~i~~fdtr~sp~ve  389 (445)
T KOG2139|consen  354 DPSGEYLAVIFKGQSFVLLCKLHISRFDTRKSPPVE  389 (445)
T ss_pred             CCCCCEEEEEEcCCchhhhhhhhhhhhcccccCceE
Confidence            999999998775433        5567765544444

>PRK04792 tolB translocation protein TolB; Provisional

Probab=99.24  E-value=2.2e-09  Score=85.86  Aligned_cols=150  Identities=18%  Similarity=0.181  Sum_probs=94.8

Q ss_pred             EEEEEEcCCCCEEEE-EeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEEEEeCCCCCc
Q psy10953         14 MWNVVFSPDDKYVLS-GSQSGK--INLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IINIFDANTGHS   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~-~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~i~d~~~~~~   87 (181)
                      ....+|||||+.|+. .+.++.  |.++|+.+++..++... ........|+|||+.++..+. ++  .++++|+.++..
T Consensus       264 ~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl~tg~~~~lt~~-~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~  342 (448)
T PRK04792        264 NGAPRFSPDGKKLALVLSKDGQPEIYVVDIATKALTRITRH-RAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV  342 (448)
T ss_pred             cCCeeECCCCCEEEEEEeCCCCeEEEEEECCCCCeEECccC-CCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence            346789999998875 455664  77789888876654432 223346899999998876543 33  566667765432


Q ss_pred             c-------cEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC-CC--cEEE
Q psy10953         88 S-------WVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE-DK--AVHM  154 (181)
Q Consensus        88 ~-------~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~--~v~i  154 (181)
                      .       .....+|+|+|++++..+. ++  .|.++|+.++.... +..........|+|||+.++..+. ++  .+++
T Consensus       343 ~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~-lt~~~~d~~ps~spdG~~I~~~~~~~g~~~l~~  421 (448)
T PRK04792        343 SRLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQV-LTSTRLDESPSVAPNGTMVIYSTTYQGKQVLAA  421 (448)
T ss_pred             EEEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEE-ccCCCCCCCceECCCCCEEEEEEecCCceEEEE
Confidence            1       2234689999998877654 33  46667887765432 221112234579999999876664 33  3666


Q ss_pred             EeCCCCeeEEE
Q psy10953        155 YSYKPEEEVEV  165 (181)
Q Consensus       155 ~~~~~~~~~~~  165 (181)
                      ++...+.+..+
T Consensus       422 ~~~~G~~~~~l  432 (448)
T PRK04792        422 VSIDGRFKARL  432 (448)
T ss_pred             EECCCCceEEC
Confidence            77654444333

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=99.24  E-value=2.9e-09  Score=92.75  Aligned_cols=148  Identities=19%  Similarity=0.310  Sum_probs=107.8

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---------------ceEEEEEECCCCCEEE-EeeCCCc
Q psy10953         14 MWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---------------KFTLSIAYSTDGHWIA-SGALDGI   76 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------------~~~~~~~~s~d~~~l~-~~~~d~~   76 (181)
                      .++++|+| ++.++++...++.|++||..++.... +...+               .....++++|+++.|+ +-..++.
T Consensus       685 P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~  763 (1057)
T PLN02919        685 PWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSS  763 (1057)
T ss_pred             CeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCe
Confidence            46899999 55566677778999999988776532 21110               1234689999998554 4566789


Q ss_pred             EEEEeCCCCCc-----------------------------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-
Q psy10953         77 INIFDANTGHS-----------------------------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-  126 (181)
Q Consensus        77 v~i~d~~~~~~-----------------------------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-  126 (181)
                      |++||+.++..                             .....++++++|+.+++-..++.|++||..++....... 
T Consensus       764 Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG~  843 (1057)
T PLN02919        764 IRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAGT  843 (1057)
T ss_pred             EEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEecc
Confidence            99999864320                             123578899999998888899999999998765442221 


Q ss_pred             -------------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        127 -------------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       127 -------------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                                   .-..+.+++++++|+.+++-+.++.|++|++.++..
T Consensus       844 G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~  892 (1057)
T PLN02919        844 GKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGEA  892 (1057)
T ss_pred             CCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence                         112577899999999888888899999999988653

>KOG1310|consensus

Probab=99.22  E-value=4.7e-11  Score=93.85  Aligned_cols=114  Identities=23%  Similarity=0.471  Sum_probs=94.9

Q ss_pred             EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC---------CCCCcccEEEEEEcCC--CCEEEEEeCCCcEEEE
Q psy10953         46 EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA---------NTGHSSWVLSTAFTRD--GKFFISASADHTVRVW  114 (181)
Q Consensus        46 ~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~---------~~~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~  114 (181)
                      .+.+..|...+.++.|+.+|.+|++|+.|-.+.+||.         .++|..-|.++.|-|.  .+.+++|..|..|++|
T Consensus        43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf  122 (758)
T KOG1310|consen   43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF  122 (758)
T ss_pred             hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence            3556678888889999999999999999999999996         3688888999999994  5689999999999999


Q ss_pred             ecCCCc----------eeeeee-cCCcEEEEEEccCC-CEEEEEcCCCcEEEEeCCC
Q psy10953        115 NFARRE----------NMHTFK-HADQVWCVCVAPDG-DKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       115 d~~~~~----------~~~~~~-~~~~v~~~~~sp~g-~~l~~~~~d~~v~i~~~~~  159 (181)
                      |+...+          ....+. |...|-.++.-|++ ..+.++++||.++-||++.
T Consensus       123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiRE  179 (758)
T KOG1310|consen  123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIRE  179 (758)
T ss_pred             ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccC
Confidence            997421          122222 66678888888988 8899999999999999965

>KOG0974|consensus

Probab=99.22  E-value=3.3e-10  Score=94.37  Aligned_cols=140  Identities=24%  Similarity=0.392  Sum_probs=114.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---------CCc
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---------GHS   87 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---------~~~   87 (181)
                      +-++++.-++++|+-.+.|.+|+....+.-..+..|...+.++.++.||.++++.+.|.++++|++.+         +|.
T Consensus       139 ~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHs  218 (967)
T KOG0974|consen  139 IGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHS  218 (967)
T ss_pred             EeccCcEEEEEeccccccEEEEeccccCCcceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCccccccc
Confidence            44678888999999999999999863333233556666778999999999999999999999999875         477


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-c-CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         88 SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-H-ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      ..|..+.|.|+  .+++++.|.++++|+..... +..+. | ...+|.++.+++.-.+++++.|+.+++|++..
T Consensus       219 aRvw~~~~~~n--~i~t~gedctcrvW~~~~~~-l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~  289 (967)
T KOG0974|consen  219 ARVWACCFLPN--RIITVGEDCTCRVWGVNGTQ-LEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNG  289 (967)
T ss_pred             ceeEEEEeccc--eeEEeccceEEEEEecccce-ehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhc
Confidence            78999999998  89999999999999654332 22443 3 35699999999999999999999999999853

>KOG3914|consensus

Probab=99.22  E-value=5.8e-10  Score=84.50  Aligned_cols=150  Identities=17%  Similarity=0.235  Sum_probs=106.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE----EEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCC--
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL----EQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDAN--   83 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~--   83 (181)
                      -.+.+..+|.++++|.+..++...++++.....    .......... ..+.+-.+......+..   ...+.+|...  
T Consensus        64 a~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~-~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~  142 (390)
T KOG3914|consen   64 APALVLTSDSGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRP-TAISFIREDTSVLVADKAGDVYSFDILSADSG  142 (390)
T ss_pred             cccccccCCCceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCc-ceeeeeeccceEEEEeecCCceeeeeeccccc
Confidence            356777899999999998888887887764432    2222222221 23444444444444433   3444555433  


Q ss_pred             -----CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         84 -----TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        84 -----~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                           -||.+.+.+++++||+++++++..|+.|++-.+.....+..+  .|..-|..+++-++ +.|+++|.|+++++|+
T Consensus       143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd  221 (390)
T KOG3914|consen  143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWD  221 (390)
T ss_pred             CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEe
Confidence                 257777899999999999999999999999887776666655  47778999988765 4589999999999999


Q ss_pred             CCCCeeEE
Q psy10953        157 YKPEEEVE  164 (181)
Q Consensus       157 ~~~~~~~~  164 (181)
                      +.+|..+.
T Consensus       222 ~~sgk~L~  229 (390)
T KOG3914|consen  222 ITSGKLLD  229 (390)
T ss_pred             cccCCccc
Confidence            99886653

>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A

Probab=99.22  E-value=8.4e-09  Score=80.47  Aligned_cols=137  Identities=21%  Similarity=0.314  Sum_probs=97.5

Q ss_pred             CEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc-------ccEEEEEE
Q psy10953         24 KYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS-------SWVLSTAF   95 (181)
Q Consensus        24 ~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~-------~~v~~~~~   95 (181)
                      +++ ++-..+++|.+.|..+.+.+..+...+.....+.++|||+++++.+.|+.+.++|+.+.+.       .....+++
T Consensus         6 ~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i~~   85 (369)
T PF02239_consen    6 NLFYVVERGSGSVAVIDGATNKVVARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVVATIKVGGNPRGIAV   85 (369)
T ss_dssp             GEEEEEEGGGTEEEEEETTT-SEEEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEEEE
T ss_pred             cEEEEEecCCCEEEEEECCCCeEEEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEEEEEecCCCcceEEE
Confidence            344 4666789999999999999998887555455688999999999999999999999987542       23577999


Q ss_pred             cCCCCEEEEEe-CCCcEEEEecCCCceeeeeec--------CCcEEEEEEccCCCEEEEE-cCCCcEEEEeCCCC
Q psy10953         96 TRDGKFFISAS-ADHTVRVWNFARRENMHTFKH--------ADQVWCVCVAPDGDKFVSV-GEDKAVHMYSYKPE  160 (181)
Q Consensus        96 s~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~--------~~~v~~~~~sp~g~~l~~~-~~d~~v~i~~~~~~  160 (181)
                      |+||+++++++ ..+.+.++|.++.+.+..++-        ..++..+..+|....++.. -+-+.|-+.|+...
T Consensus        86 s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~  160 (369)
T PF02239_consen   86 SPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDP  160 (369)
T ss_dssp             --TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTS
T ss_pred             cCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccc
Confidence            99999888776 578999999999888877642        2356777778888855544 44578888887554

...

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.7e-08  Score=80.06  Aligned_cols=153  Identities=16%  Similarity=0.103  Sum_probs=99.9

Q ss_pred             eEEEEEEcCCCCE-EEEEeCC---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eC--CCcEEEEeCCCC
Q psy10953         13 DMWNVVFSPDDKY-VLSGSQS---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-AL--DGIINIFDANTG   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~-l~~~~~d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~--d~~v~i~d~~~~   85 (181)
                      ......|||||+. ++..+.+   ..|.++|+.+++...+....+. .....|+|||+.++.. +.  +..++++|+..+
T Consensus       189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~-~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g  267 (419)
T PRK04043        189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGM-LVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK  267 (419)
T ss_pred             CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCc-EEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence            3467899999995 6654443   4688999999887776553333 3467899999877653 32  356777787644


Q ss_pred             Cc-------ccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC------
Q psy10953         86 HS-------SWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED------  149 (181)
Q Consensus        86 ~~-------~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d------  149 (181)
                      ..       .......|+|||+.++..+. .+  .|+++|+.+++....... +. ....+||||+.++..+..      
T Consensus       268 ~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~-g~-~~~~~SPDG~~Ia~~~~~~~~~~~  345 (419)
T PRK04043        268 TLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFH-GK-NNSSVSTYKNYIVYSSRETNNEFG  345 (419)
T ss_pred             cEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccC-CC-cCceECCCCCEEEEEEcCCCcccC
Confidence            21       11234689999987665553 33  688888877654322221 11 234899999998777643      


Q ss_pred             ---CcEEEEeCCCCeeEEEcCC
Q psy10953        150 ---KAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       150 ---~~v~i~~~~~~~~~~~~~~  168 (181)
                         ..|.+.++.++....+..+
T Consensus       346 ~~~~~I~v~d~~~g~~~~LT~~  367 (419)
T PRK04043        346 KNTFNLYLISTNSDYIRRLTAN  367 (419)
T ss_pred             CCCcEEEEEECCCCCeEECCCC
Confidence               2577888877765555444

>PRK04043 tolB translocation protein TolB; Provisional

Probab=99.20  E-value=1.1e-08  Score=81.23  Aligned_cols=160  Identities=15%  Similarity=0.085  Sum_probs=100.5

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEE-eC--CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEEE
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSG-SQ--SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IINI   79 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~-~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~i   79 (181)
                      .+...+......+|||||+.++.. +.  +..|.++|+.+++..++....+. .....|+|||+.|+..+. .+  .+++
T Consensus       227 ~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~~~~LT~~~~~-d~~p~~SPDG~~I~F~Sdr~g~~~Iy~  305 (419)
T PRK04043        227 KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKTLTQITNYPGI-DVNGNFVEDDKRIVFVSDRLGYPNIFM  305 (419)
T ss_pred             EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCcEEEcccCCCc-cCccEECCCCCEEEEEECCCCCceEEE
Confidence            343344445567899999987643 32  35688889888876665433322 235789999998887653 22  6777


Q ss_pred             EeCCCCCcccE-----EEEEEcCCCCEEEEEeCC---------CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEE
Q psy10953         80 FDANTGHSSWV-----LSTAFTRDGKFFISASAD---------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        80 ~d~~~~~~~~v-----~~~~~s~~~~~l~~~~~d---------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      +|+.++....+     ....|+|+|+.++.....         ..|++.|+.++... .+..........|+|||+.++.
T Consensus       306 ~dl~~g~~~rlt~~g~~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~-~LT~~~~~~~p~~SPDG~~I~f  384 (419)
T PRK04043        306 KKLNSGSVEQVVFHGKNNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIR-RLTANGVNQFPRFSSDGGSIMF  384 (419)
T ss_pred             EECCCCCeEeCccCCCcCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeE-ECCCCCCcCCeEECCCCCEEEE
Confidence            78865533111     225799999988766643         36888898776533 2322223335889999998876


Q ss_pred             EcCC-C--cEEEEeCCCCeeEEEcC
Q psy10953        146 VGED-K--AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       146 ~~~d-~--~v~i~~~~~~~~~~~~~  167 (181)
                      .+.+ +  .+.+.++.......+..
T Consensus       385 ~~~~~~~~~L~~~~l~g~~~~~l~~  409 (419)
T PRK04043        385 IKYLGNQSALGIIRLNYNKSFLFPL  409 (419)
T ss_pred             EEccCCcEEEEEEecCCCeeEEeec
Confidence            6643 3  35566665544444433

>KOG4547|consensus

Probab=99.18  E-value=2.2e-09  Score=84.81  Aligned_cols=151  Identities=21%  Similarity=0.315  Sum_probs=116.6

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC----CceE-----EEEEECC--------------CCCEEEEeeCCCc
Q psy10953         20 SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR----GKFT-----LSIAYST--------------DGHWIASGALDGI   76 (181)
Q Consensus        20 s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~-----~~~~~s~--------------d~~~l~~~~~d~~   76 (181)
                      +|-+.++|....||.+++|++..+++.+.|...    +..+     ..+..+|              |-..++.|...|.
T Consensus         2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~   81 (541)
T KOG4547|consen    2 PPALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGS   81 (541)
T ss_pred             CchhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCcc
Confidence            456778999999999999999999887766532    2211     1122232              2345677888999


Q ss_pred             EEEEeCCC----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEE
Q psy10953         77 INIFDANT----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        77 v~i~d~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~  145 (181)
                      |-+|+...          +|.+.|.++.++.+-..+-+++.|+.+..|+......++.+. ....+.+++++|||..+++
T Consensus        82 v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~  161 (541)
T KOG4547|consen   82 VLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLT  161 (541)
T ss_pred             EEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEe
Confidence            99998753          466778888888888889999999999999999988888876 3445889999999999998


Q ss_pred             EcCCCcEEEEeCCCCeeEEEcCCCCcc
Q psy10953        146 VGEDKAVHMYSYKPEEEVEVNGGGGEE  172 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~~~~~~~~~~~~~  172 (181)
                      ++  +.|.+|++.+++.+.-.-|...+
T Consensus       162 as--~~ik~~~~~~kevv~~ftgh~s~  186 (541)
T KOG4547|consen  162 AS--RQIKVLDIETKEVVITFTGHGSP  186 (541)
T ss_pred             cc--ceEEEEEccCceEEEEecCCCcc
Confidence            88  57999999998877766665443

>KOG1517|consensus

Probab=99.18  E-value=5.8e-10  Score=93.50  Aligned_cols=137  Identities=15%  Similarity=0.313  Sum_probs=105.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcE---EEEEecCCce--EEEEEECCCCC-EEEEeeCCCcEEEEeCCCCC---------
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKL---EQIFDTRGKF--TLSIAYSTDGH-WIASGALDGIINIFDANTGH---------   86 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~--~~~~~~s~d~~-~l~~~~~d~~v~i~d~~~~~---------   86 (181)
                      .|+.+++|..||.+++||.+....   +.....|...  +..+.+.+.|- .|++|+.||.|++||++...         
T Consensus      1220 ~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~ 1299 (1387)
T KOG1517|consen 1220 HGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVA 1299 (1387)
T ss_pred             CCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeee
Confidence            579999999999999999875433   3334444444  66788877664 49999999999999998621         


Q ss_pred             ----cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--------ecCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         87 ----SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--------KHADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                          .+..+++..+++...++||+. +.|+||++..... ..+        +..+.+.|++|+|-.-.+++|+.|..|.+
T Consensus      1300 ~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l-~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~i 1377 (1387)
T KOG1517|consen 1300 HWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLSGEQL-NIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSI 1377 (1387)
T ss_pred             ccccCccceeeeeccCCCeeeecCc-ceEEEEecChhhh-cccccCcccccCcCCCcceeeecchhHhhhhccCCceEEE
Confidence                123678888999999999998 9999999865432 111        12345789999999989999999999999


Q ss_pred             EeCCCC
Q psy10953        155 YSYKPE  160 (181)
Q Consensus       155 ~~~~~~  160 (181)
                      |.-...
T Consensus      1378 Ys~~k~ 1383 (1387)
T KOG1517|consen 1378 YSCEKP 1383 (1387)
T ss_pred             eecCCc
Confidence            987544

>KOG0974|consensus

Probab=99.16  E-value=2.2e-09  Score=89.59  Aligned_cols=140  Identities=24%  Similarity=0.484  Sum_probs=114.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE----EEEEECCCCCEEEEeeCCCcEEEEeCC--------C
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT----LSIAYSTDGHWIASGALDGIINIFDAN--------T   84 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~----~~~~~s~d~~~l~~~~~d~~v~i~d~~--------~   84 (181)
                      ..+.-+.+.++.++.+..+.+||...+......+......    ..+-++++.-++++|+--+.+.+|+..        .
T Consensus        93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~dn~p~~l~  172 (967)
T KOG0974|consen   93 AKLFEENKKIALVTSRNSLLIRDSKNSSVLSKIQSDERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHEDNKPIRLK  172 (967)
T ss_pred             cchhhhcceEEEEEcCceEEEEecccCceehhcCCCceEEEEeEEEEeccCcEEEEEeccccccEEEEeccccCCcceec
Confidence            3445567778888888899999998887766555433321    124557777789999999999999864        4


Q ss_pred             CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee--eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH--TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 ~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +|.+.+.++.++-+|+++++++.|.++++|++.+.+...  -+.|+.++|.++|+|+  .+++++.|.+.++|+..
T Consensus       173 GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~  246 (967)
T KOG0974|consen  173 GHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVN  246 (967)
T ss_pred             ccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEecc
Confidence            788999999999999999999999999999999876443  4579999999999999  89999999999999653

>KOG0644|consensus

Probab=99.16  E-value=4.5e-11  Score=97.83  Aligned_cols=163  Identities=19%  Similarity=0.289  Sum_probs=122.8

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +++.+..+..++.+++.+.+..++++++.|..|++|.+.++..+.++..|...+..++|+|-.    +.+.||++.+||.
T Consensus       224 ~lAs~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~  299 (1113)
T KOG0644|consen  224 CLASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDA  299 (1113)
T ss_pred             hhccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccc
Confidence            466778889999999999999999999999999999999999999888888888899999954    6788999999997


Q ss_pred             CCC------------Cccc------------------------------------EEEEEEcCCC-CEEEEEeCCCcEEE
Q psy10953         83 NTG------------HSSW------------------------------------VLSTAFTRDG-KFFISASADHTVRV  113 (181)
Q Consensus        83 ~~~------------~~~~------------------------------------v~~~~~s~~~-~~l~~~~~d~~i~v  113 (181)
                      +-.            ....                                    +..+..+.+- ...+++-.+..+.+
T Consensus       300 r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~v  379 (1113)
T KOG0644|consen  300 RLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCV  379 (1113)
T ss_pred             cccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeee
Confidence            510            0000                                    1111222121 23334445667888


Q ss_pred             EecCCCceeeeee-cCCcEEEEEEccCCCE-EEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        114 WNFARRENMHTFK-HADQVWCVCVAPDGDK-FVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       114 ~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~-l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      |++.++...+... |.+.++.+.++|-+.. ..+++.||...|||+-.|-++....-|
T Consensus       380 wnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g  437 (1113)
T KOG0644|consen  380 WNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG  437 (1113)
T ss_pred             eecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence            8888887776654 7788999999996554 567888999999999877766655433

>KOG4227|consensus

Probab=99.13  E-value=1.6e-09  Score=82.43  Aligned_cols=110  Identities=16%  Similarity=0.276  Sum_probs=95.6

Q ss_pred             CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         52 RGKFTLSIAYSTDGHWIASGALDGIINIFDANT---------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        52 ~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                      |...+..+.||.++++|++|+.|..+.+|+...               .|.+-|.+++|....+++.+|..+++|..-|+
T Consensus        55 H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDi  134 (609)
T KOG4227|consen   55 HTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDI  134 (609)
T ss_pred             hccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeec
Confidence            445567899999999999999999999998631               24467899999999999999999999999999


Q ss_pred             CCCceeeeeecCC---cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        117 ARRENMHTFKHAD---QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       117 ~~~~~~~~~~~~~---~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      .+.+.+..+.+.+   .|+.+..+|..+.|++.+.++.|.+|++...+
T Consensus       135 Et~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~  182 (609)
T KOG4227|consen  135 ETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQ  182 (609)
T ss_pred             ccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCC
Confidence            9988887776554   89999999999999999999999999986543

>KOG3881|consensus

Probab=99.13  E-value=1.5e-09  Score=82.10  Aligned_cols=125  Identities=17%  Similarity=0.226  Sum_probs=104.3

Q ss_pred             EEEEEcCC--CCEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC------
Q psy10953         15 WNVVFSPD--DKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG------   85 (181)
Q Consensus        15 ~~~~~s~~--g~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~------   85 (181)
                      .++.|-+.  ...+|++..-+.+++||.+.+ +....|......+.++...|+++.+++|..-+.+..+|++.+      
T Consensus       206 tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~~  285 (412)
T KOG3881|consen  206 TDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGCG  285 (412)
T ss_pred             ccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeeccc
Confidence            45777777  788999999999999999844 455666666667778999999999999999999999999853      


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~  139 (181)
                         -.+.+.++..+|.++++++++-|..++|+|+.+.+.++.......++++.+.++
T Consensus       286 ~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYvKs~lt~il~~~~  342 (412)
T KOG3881|consen  286 LKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYVKSRLTFILLRDD  342 (412)
T ss_pred             cCCccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhhhccccEEEecCC
Confidence               356789999999999999999999999999999777766665566777777654

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.12  E-value=6.1e-08  Score=75.14  Aligned_cols=147  Identities=19%  Similarity=0.384  Sum_probs=98.2

Q ss_pred             eeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc--EEE--EEe-cCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCC-
Q psy10953         12 VDMWNVVFSPDDKYVLSGS-QSGKINLYGVETGK--LEQ--IFD-TRGKFTLSIAYSTDGHWIASG-ALDGIINIFDAN-   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~--~~~--~~~-~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~-   83 (181)
                      ....++.|+|||+++++.. ....|.+|++....  +..  .+. ..+.-...+.|+|++++++.. -.++.|.++++. 
T Consensus       144 ~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~  223 (345)
T PF10282_consen  144 PHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDP  223 (345)
T ss_dssp             TCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred             ccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecc
Confidence            3356899999999987754 34589999987654  432  222 223334579999999988665 457788888765 


Q ss_pred             -CC----------------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCC--Cc--eeeeeec-CCcEEEEEEccCC
Q psy10953         84 -TG----------------HSSWVLSTAFTRDGKFFISASA-DHTVRVWNFAR--RE--NMHTFKH-ADQVWCVCVAPDG  140 (181)
Q Consensus        84 -~~----------------~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~--~~--~~~~~~~-~~~v~~~~~sp~g  140 (181)
                       .+                .......++++|+|++|.++.. ...|.+|++..  +.  .+..+.. ....+.++++|+|
T Consensus       224 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g  303 (345)
T PF10282_consen  224 SDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDG  303 (345)
T ss_dssp             TTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTS
T ss_pred             cCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCC
Confidence             21                0124678899999998777664 56799999832  32  2233333 3448999999999


Q ss_pred             CEEEEEcC-CCcEEEEeCC
Q psy10953        141 DKFVSVGE-DKAVHMYSYK  158 (181)
Q Consensus       141 ~~l~~~~~-d~~v~i~~~~  158 (181)
                      ++|+++.. ++.|.+|++.
T Consensus       304 ~~l~Va~~~s~~v~vf~~d  322 (345)
T PF10282_consen  304 RYLYVANQDSNTVSVFDID  322 (345)
T ss_dssp             SEEEEEETTTTEEEEEEEE
T ss_pred             CEEEEEecCCCeEEEEEEe
Confidence            99988875 5789999874

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=99.10  E-value=3.2e-07  Score=70.75  Aligned_cols=151  Identities=15%  Similarity=0.228  Sum_probs=106.4

Q ss_pred             EEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEEecCCce-------------------------------EEEEE-
Q psy10953         15 WNVVFSPDDKYVLSGSQ--SGKINLYGVETGKLEQIFDTRGKF-------------------------------TLSIA-   60 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~-------------------------------~~~~~-   60 (181)
                      ..+++||||++|+....  +..+.+.|+.+++.+..+...+..                               ..... 
T Consensus       108 ~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~v  187 (352)
T TIGR02658       108 WMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEV  187 (352)
T ss_pred             ceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeee
Confidence            47899999999987763  688999999998876644322100                               00001 


Q ss_pred             E-------------CC-CCCEEEEeeCCCcEEEEeCCCCC--------------------cccEEEEEEcCCCCEEEEEe
Q psy10953         61 Y-------------ST-DGHWIASGALDGIINIFDANTGH--------------------SSWVLSTAFTRDGKFFISAS  106 (181)
Q Consensus        61 ~-------------s~-d~~~l~~~~~d~~v~i~d~~~~~--------------------~~~v~~~~~s~~~~~l~~~~  106 (181)
                      |             ++ +|+++..... |.|++.|+....                    ......++++|+++.+....
T Consensus       188 f~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~  266 (352)
T TIGR02658       188 FHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLA  266 (352)
T ss_pred             ecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEe
Confidence            1             12 5555544443 888888853210                    11123489999998776643


Q ss_pred             C----------CCcEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEEc-CCCcEEEEeCCCCeeEEEc
Q psy10953        107 A----------DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSVG-EDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       107 ~----------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~v~i~~~~~~~~~~~~  166 (181)
                      .          ...|.++|.++++.+..+.-...++.++++|||+ .+++.. .++.|.++|..+++.+...
T Consensus       267 ~~~~~~thk~~~~~V~ViD~~t~kvi~~i~vG~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i  338 (352)
T TIGR02658       267 DQRAKWTHKTASRFLFVVDAKTGKRLRKIELGHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV  338 (352)
T ss_pred             cCCccccccCCCCEEEEEECCCCeEEEEEeCCCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence            1          2479999999999999888778899999999999 887666 5788999999998887654

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3

Probab=99.09  E-value=9e-08  Score=74.21  Aligned_cols=145  Identities=20%  Similarity=0.372  Sum_probs=102.6

Q ss_pred             EEEEEEcCCCCEEEEEeC----CCcEEEEeCCC--CcEE--EEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQ----SGKINLYGVET--GKLE--QIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANT   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~----d~~i~~~d~~~--~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~   84 (181)
                      ...++++|++++|.+.+.    ++.|..|++..  +++.  ......+.....++++|++++|+++.. +|.+.++++..
T Consensus        39 Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l~~  118 (345)
T PF10282_consen   39 PSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPLDD  118 (345)
T ss_dssp             ECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEccC
Confidence            456889999999988766    56899998875  4443  223334444557899999999998875 88999998753


Q ss_pred             -C---------------------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCc--e--ee--eeecCCcEEEEE
Q psy10953         85 -G---------------------HSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRE--N--MH--TFKHADQVWCVC  135 (181)
Q Consensus        85 -~---------------------~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~--~--~~--~~~~~~~v~~~~  135 (181)
                       +                     .......+.++|+|+++++... ...|++|++....  .  ..  ..+.....+.++
T Consensus       119 ~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~  198 (345)
T PF10282_consen  119 DGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLA  198 (345)
T ss_dssp             TSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEE
T ss_pred             CcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEE
Confidence             1                     1133567899999998877664 4579999987654  2  12  223456789999


Q ss_pred             EccCCCEEEEEcC-CCcEEEEeCC
Q psy10953        136 VAPDGDKFVSVGE-DKAVHMYSYK  158 (181)
Q Consensus       136 ~sp~g~~l~~~~~-d~~v~i~~~~  158 (181)
                      |+|+++++++..+ ++.|.++++.
T Consensus       199 f~pdg~~~Yv~~e~s~~v~v~~~~  222 (345)
T PF10282_consen  199 FSPDGKYAYVVNELSNTVSVFDYD  222 (345)
T ss_dssp             E-TTSSEEEEEETTTTEEEEEEEE
T ss_pred             EcCCcCEEEEecCCCCcEEEEeec
Confidence            9999999877665 7889999987

1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.

>KOG2111|consensus

Probab=99.08  E-value=2.5e-08  Score=73.92  Aligned_cols=140  Identities=20%  Similarity=0.347  Sum_probs=95.1

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCc-EEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGK-INLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~-i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      -+..+..++.+++++.+|.++||++..|| ||+||..+|..++.+..  ....+++++|||+..+|++++.-|+++++.+
T Consensus       176 ~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l  255 (346)
T KOG2111|consen  176 IINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSL  255 (346)
T ss_pred             EEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEe
Confidence            34557778899999999999999999998 89999999999988764  2345789999999999999999999999998


Q ss_pred             CCCCcccE--EEEEEcC--CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         83 NTGHSSWV--LSTAFTR--DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        83 ~~~~~~~v--~~~~~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      +......-  .++++-.  -.+++            +  +.-.+..++ ..+...-++|-.+.+.++..+.|+..+-+.+
T Consensus       256 ~~~~~~~~~~SSl~~~~~~lpky~------------~--S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f  321 (346)
T KOG2111|consen  256 RDTENTEDESSSLSFKRLVLPKYF------------S--SEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKF  321 (346)
T ss_pred             ecCCCCccccccccccccccchhc------------c--cceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEe
Confidence            75442211  1111000  00111            0  111223333 2334555777777566777777887766555


Q ss_pred             CC
Q psy10953        158 KP  159 (181)
Q Consensus       158 ~~  159 (181)
                      .+
T Consensus       322 ~~  323 (346)
T KOG2111|consen  322 DP  323 (346)
T ss_pred             cc
Confidence            43

>KOG0322|consensus

Probab=99.07  E-value=6.2e-10  Score=80.53  Aligned_cols=109  Identities=20%  Similarity=0.346  Sum_probs=85.4

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CcEE--EEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--GKLE--QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      .-++..+.++.+.+.-..=++|+.+..+..|.+..  +.+.  ........-+..+.+-||++.++++++|+.+++|.-+
T Consensus       202 ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswr  281 (323)
T KOG0322|consen  202 ASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWR  281 (323)
T ss_pred             hhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEec
Confidence            33555677788877666667888899999998863  3321  1122233334578999999999999999999999865


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                      +        .|...|++++|+|+...++.++.|+.|.+|++
T Consensus       282 tl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL  322 (323)
T KOG0322|consen  282 TLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL  322 (323)
T ss_pred             cCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence            3        58888999999999999999999999999986

>KOG1587|consensus

Probab=99.07  E-value=9.6e-09  Score=83.21  Aligned_cols=149  Identities=15%  Similarity=0.200  Sum_probs=109.0

Q ss_pred             eeeEEEEEEcC-CCCEEEEEeCCCcEEEEe---CCCCc-----EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         11 PVDMWNVVFSP-DDKYVLSGSQSGKINLYG---VETGK-----LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        11 ~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d---~~~~~-----~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .....+++|.| +-..++.|+.+|.|.-=+   .+...     ....+..|...+..+.++|-+..++..+.|-.|++|.
T Consensus       347 ~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs  426 (555)
T KOG1587|consen  347 AVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWS  426 (555)
T ss_pred             ccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEecc
Confidence            34467888987 556788999999987632   22222     1223445666788999999887776666699999998


Q ss_pred             CC-C--------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC--ceeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         82 AN-T--------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARR--ENMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        82 ~~-~--------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~--~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      -. .        .+..++.+++|||-.- .++++..||++.+||+...  .++.+.. .....+.+.++++|+.+++|..
T Consensus       427 ~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~  506 (555)
T KOG1587|consen  427 EDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDA  506 (555)
T ss_pred             ccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecC
Confidence            65 2        2345689999999764 7778888999999999753  3444443 3334567788888999999999


Q ss_pred             CCcEEEEeCCC
Q psy10953        149 DKAVHMYSYKP  159 (181)
Q Consensus       149 d~~v~i~~~~~  159 (181)
                      .|.+++|++..
T Consensus       507 ~G~~~~~~l~~  517 (555)
T KOG1587|consen  507 NGTTHILKLSE  517 (555)
T ss_pred             CCcEEEEEcCc
Confidence            99999999954

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=99.06  E-value=7.4e-08  Score=72.55  Aligned_cols=151  Identities=17%  Similarity=0.352  Sum_probs=108.8

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCC---CcEEEEeCCC--CcEEE--EEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEe
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQS---GKINLYGVET--GKLEQ--IFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFD   81 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d---~~i~~~d~~~--~~~~~--~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d   81 (181)
                      ....+.-++|+|++++|.++..+   +.|--|.++.  |++..  .....+.....++++++|++++++.. -|.|.++-
T Consensus        38 ~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~~g~~p~yvsvd~~g~~vf~AnY~~g~v~v~p  117 (346)
T COG2706          38 ELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTLPGSPPCYVSVDEDGRFVFVANYHSGSVSVYP  117 (346)
T ss_pred             ccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeeccccCCCCCeEEEECCCCCEEEEEEccCceEEEEE
Confidence            34446789999999999887654   6787787764  55432  22223444357999999999988765 46788886


Q ss_pred             CCC-C----------Cc----------ccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceee----eeecCCcEEEEE
Q psy10953         82 ANT-G----------HS----------SWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMH----TFKHADQVWCVC  135 (181)
Q Consensus        82 ~~~-~----------~~----------~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~----~~~~~~~v~~~~  135 (181)
                      ++. +          |.          ..+-...++|+++++++.+- ...|.+|++..+....    .++.....+.++
T Consensus       118 ~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~  197 (346)
T COG2706         118 LQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIV  197 (346)
T ss_pred             cccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEE
Confidence            642 1          11          22667889999999888774 3579999998765332    223455688999


Q ss_pred             EccCCCEEEEEcC-CCcEEEEeCCCC
Q psy10953        136 VAPDGDKFVSVGE-DKAVHMYSYKPE  160 (181)
Q Consensus       136 ~sp~g~~l~~~~~-d~~v~i~~~~~~  160 (181)
                      |+|++++.++..+ +++|-+|.+...
T Consensus       198 FHpn~k~aY~v~EL~stV~v~~y~~~  223 (346)
T COG2706         198 FHPNGKYAYLVNELNSTVDVLEYNPA  223 (346)
T ss_pred             EcCCCcEEEEEeccCCEEEEEEEcCC
Confidence            9999999888776 899999998773

>KOG1354|consensus

Probab=99.02  E-value=1.7e-08  Score=75.69  Aligned_cols=151  Identities=16%  Similarity=0.317  Sum_probs=110.6

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEecC-------CceEEEEEECCC-CCEEEEeeCCCcEEE
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDTR-------GKFTLSIAYSTD-GHWIASGALDGIINI   79 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~-------~~~~~~~~~s~d-~~~l~~~~~d~~v~i   79 (181)
                      .++..+.+|++..|+..++++ +|-.|.+|.++ +.+........       ...+.+..|+|. .++|+..++-|.+++
T Consensus       162 aHtyhiNSIS~NsD~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrL  240 (433)
T KOG1354|consen  162 AHTYHINSISVNSDKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRL  240 (433)
T ss_pred             cceeEeeeeeecCccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEE
Confidence            366778899999999988877 48899999886 33333333322       234567899995 578888999999999


Q ss_pred             EeCCC-----CC-------------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-Cceeeeee-c------
Q psy10953         80 FDANT-----GH-------------------SSWVLSTAFTRDGKFFISASADHTVRVWNFAR-RENMHTFK-H------  127 (181)
Q Consensus        80 ~d~~~-----~~-------------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~------  127 (181)
                      .|.+.     .|                   ...|..+.|+++|+++++-+. -+|++||+.. .+++.+++ |      
T Consensus       241 cDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~k  319 (433)
T KOG1354|consen  241 CDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSK  319 (433)
T ss_pred             eechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHH
Confidence            99872     11                   135788999999999987664 4899999843 34444443 2      


Q ss_pred             ------CCcE---EEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        128 ------ADQV---WCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       128 ------~~~v---~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                            .+.|   -.++|+-++..+++|+..+.+++++...|.
T Consensus       320 Lc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs  362 (433)
T KOG1354|consen  320 LCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS  362 (433)
T ss_pred             HHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence                  1222   247889999999999999999999965543

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=99.02  E-value=5.6e-08  Score=75.81  Aligned_cols=136  Identities=12%  Similarity=0.196  Sum_probs=108.9

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCC-cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC---
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSG-KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH---   86 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---   86 (181)
                      +..+.-..+..+++-++.|..|| .+-++|.++++.......- ..+..+..+++|+.++.+.....+-++|+.++.   
T Consensus       359 ~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~l-g~I~av~vs~dGK~~vvaNdr~el~vididngnv~~  437 (668)
T COG4946         359 KGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDL-GNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRL  437 (668)
T ss_pred             CCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCc-cceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeE
Confidence            34466777788888889999998 8999999998876654333 346789999999999999888899999987653   


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASADH----TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                           ..-|+...|+|+++++|-+-.+|    .|+++|+..++..........-.+-+|.||+++|.--+
T Consensus       438 idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta~DfsPaFD~d~ryLYfLs  507 (668)
T COG4946         438 IDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTAYDFSPAFDPDGRYLYFLS  507 (668)
T ss_pred             ecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEecCCcccccCcccCCCCcEEEEEe
Confidence                 34588999999999999877764    79999999988776555555566789999999886655

>KOG2315|consensus

Probab=99.00  E-value=9.2e-08  Score=75.60  Aligned_cols=146  Identities=17%  Similarity=0.290  Sum_probs=102.0

Q ss_pred             eeeEEEEEEcCCCCEEE---EEeCCC---------cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE--eeCCCc
Q psy10953         11 PVDMWNVVFSPDDKYVL---SGSQSG---------KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS--GALDGI   76 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~---~~~~d~---------~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~--~~~d~~   76 (181)
                      ..+.-.+.|.+-|.-|+   +..-|+         ++++.++++.....-+.. ...|.++.|+|+++-|++  |--=..
T Consensus       217 kadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k-~GPVhdv~W~~s~~EF~VvyGfMPAk  295 (566)
T KOG2315|consen  217 KADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLK-EGPVHDVTWSPSGREFAVVYGFMPAK  295 (566)
T ss_pred             ccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCC-CCCceEEEECCCCCEEEEEEecccce
Confidence            34445677887777432   333333         688888774443333332 445779999999988765  333457


Q ss_pred             EEEEeCCCC-----CcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc-
Q psy10953         77 INIFDANTG-----HSSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG-  147 (181)
Q Consensus        77 v~i~d~~~~-----~~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-  147 (181)
                      +.++|++..     -.+.=+.+-|+|.|++++-++.+   |.+-+||..+.+.+..+.-.+.. -..|+|||++|+++. 
T Consensus       296 vtifnlr~~~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~tt-~~eW~PdGe~flTATT  374 (566)
T KOG2315|consen  296 VTIFNLRGKPVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANTT-VFEWSPDGEYFLTATT  374 (566)
T ss_pred             EEEEcCCCCEeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCce-EEEEcCCCcEEEEEec
Confidence            889988642     12333667899999998888764   89999999998888777654433 468999999998876 


Q ss_pred             -----CCCcEEEEeCC
Q psy10953        148 -----EDKAVHMYSYK  158 (181)
Q Consensus       148 -----~d~~v~i~~~~  158 (181)
                           .|+.++||++.
T Consensus       375 aPRlrvdNg~Kiwhyt  390 (566)
T KOG2315|consen  375 APRLRVDNGIKIWHYT  390 (566)
T ss_pred             cccEEecCCeEEEEec
Confidence                 37889999984

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.97  E-value=3e-07  Score=67.45  Aligned_cols=145  Identities=10%  Similarity=0.245  Sum_probs=94.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC------CceEEEEEECCC------CCEEEEeeCCCcEEEEeC
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR------GKFTLSIAYSTD------GHWIASGALDGIINIFDA   82 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~s~d------~~~l~~~~~d~~v~i~d~   82 (181)
                      +.++||||+..||.+...|+|++||+....+...-...      ...+.++.|-+-      ...|++....|.++-|-+
T Consensus        47 Rkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~v  126 (282)
T PF15492_consen   47 RKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLV  126 (282)
T ss_pred             eEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEE
Confidence            67999999999999999999999999865443211111      233445555331      123555667776666654


Q ss_pred             CC----------------CCcccEEEEEEcCCCCEEEEEeCC-C----------cEEEEecCCCc---------------
Q psy10953         83 NT----------------GHSSWVLSTAFTRDGKFFISASAD-H----------TVRVWNFARRE---------------  120 (181)
Q Consensus        83 ~~----------------~~~~~v~~~~~s~~~~~l~~~~~d-~----------~i~v~d~~~~~---------------  120 (181)
                      ..                .+...|.++.++|..++|+.++.. .          =+.-|.+-++.               
T Consensus       127 s~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~  206 (282)
T PF15492_consen  127 SVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITA  206 (282)
T ss_pred             EcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccc
Confidence            21                124468899999998877766542 1          13444321100               


Q ss_pred             --------eeee---e----ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        121 --------NMHT---F----KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       121 --------~~~~---~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                              .+..   +    ...+.|..+.+||||+.|++..-+|.|.+|++..
T Consensus       207 ~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs  260 (282)
T PF15492_consen  207 SSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS  260 (282)
T ss_pred             cccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence                    0001   1    1345688999999999999999999999999965

>KOG0280|consensus

Probab=98.95  E-value=5.5e-08  Score=71.53  Aligned_cols=139  Identities=17%  Similarity=0.209  Sum_probs=102.4

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE--EEecCCceEEEEEECCC-CCEEEEeeCCCcEEEEeCCC---
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ--IFDTRGKFTLSIAYSTD-GHWIASGALDGIINIFDANT---   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~--~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~v~i~d~~~---   84 (181)
                      .....++.|++-+..++++-.+|.+.+-+.....+..  .+..|.-......|+.. .+.+.+|+.|+.+.-||++.   
T Consensus       121 ~~~~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~  200 (339)
T KOG0280|consen  121 VVEALSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT  200 (339)
T ss_pred             heeeeEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence            3345788999999999999999998866555444443  45555555556677654 36778899999999999983   


Q ss_pred             -------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCC-CceeeeeecCCcEEEEEEccCC--CEEEEEcCC
Q psy10953         85 -------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFAR-RENMHTFKHADQVWCVCVAPDG--DKFVSVGED  149 (181)
Q Consensus        85 -------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~v~~~~~sp~g--~~l~~~~~d  149 (181)
                             .|...|.++.-+| .+.++++|+.|..|++||.+. ++++..-...+.||.+..+|.-  +.++++..+
T Consensus       201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~  276 (339)
T KOG0280|consen  201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHN  276 (339)
T ss_pred             eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhc
Confidence                   2455677776666 467999999999999999984 6677666677899999999853  344444443

>KOG1064|consensus

Probab=98.95  E-value=5.2e-09  Score=91.90  Aligned_cols=139  Identities=20%  Similarity=0.353  Sum_probs=109.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEEeeCCCcEEEEeCC---------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIASGALDGIINIFDAN---------   83 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~d~~v~i~d~~---------   83 (181)
                      +..+.=+|-..+.++|++||.+++|.-..++.+..+...+. .+..+.|+.+|+.+..+..||.+.+|.+.         
T Consensus      2211 v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~qc 2290 (2439)
T KOG1064|consen 2211 VRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQC 2290 (2439)
T ss_pred             eeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceecccc
Confidence            55666688888899999999999999887877766665332 24457788888888888888888888642         


Q ss_pred             ------------------------------------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q psy10953         84 ------------------------------------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN  121 (181)
Q Consensus        84 ------------------------------------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~  121 (181)
                                                                +.|...++.+++-|..++|++|+.+|.|++||++..+.
T Consensus      2291 hnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql 2370 (2439)
T KOG1064|consen 2291 HNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQL 2370 (2439)
T ss_pred             CCccccceeeeehhhhccccCCCCCcccchhcccCcccceeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHH
Confidence                                                      12445677889999999999999999999999988877


Q ss_pred             eeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        122 MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       122 ~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      ++.++.        ++ ...+|++++.+|.++||++..-.
T Consensus      2371 ~h~~~~--------~~-~~~~f~~~ss~g~ikIw~~s~~~ 2401 (2439)
T KOG1064|consen 2371 RHTFQA--------LD-TREYFVTGSSEGNIKIWRLSEFG 2401 (2439)
T ss_pred             HHHhhh--------hh-hhheeeccCcccceEEEEccccc
Confidence            766654        23 46688999999999999986543

>KOG4547|consensus

Probab=98.93  E-value=1.1e-07  Score=75.36  Aligned_cols=136  Identities=20%  Similarity=0.277  Sum_probs=109.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--------CcccEE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVL   91 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--------~~~~v~   91 (181)
                      |-..++-|...|.|.+|++..+++...+..  |...+.++.++.+-..|.+++.|..+.+|+...+        -...+.
T Consensus        69 ~t~~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~  148 (541)
T KOG4547|consen   69 DTSMLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVS  148 (541)
T ss_pred             CceEEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccc
Confidence            445677888899999999999999887764  4445667777777788999999999999998653        234567


Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccC-----CCEEEEEc-CCCcEEEEeCCC
Q psy10953         92 STAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPD-----GDKFVSVG-EDKAVHMYSYKP  159 (181)
Q Consensus        92 ~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~-----g~~l~~~~-~d~~v~i~~~~~  159 (181)
                      .+.++|||+.+++++  +.|++||+.+++.+..|. |.++|+++.|.-+     |.++.++. .+..+.+|-.+.
T Consensus       149 sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~  221 (541)
T KOG4547|consen  149 SLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK  221 (541)
T ss_pred             eEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence            788999999998887  689999999999998887 8889999999877     77766555 466777777643

>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]

Probab=98.93  E-value=1.5e-07  Score=73.55  Aligned_cols=81  Identities=19%  Similarity=0.345  Sum_probs=66.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC----cEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG----IINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~----~v~i   79 (181)
                      .-++..+...+..+..+|||+.++.+.+...+.+.|+.+++....-..+...+..+.|||+++++|.+--+|    .+++
T Consensus       394 ~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Ikl  473 (668)
T COG4946         394 VKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKL  473 (668)
T ss_pred             EEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEE
Confidence            345566667789999999999999999999999999999987655555566678999999999999886554    6788


Q ss_pred             EeCCC
Q psy10953         80 FDANT   84 (181)
Q Consensus        80 ~d~~~   84 (181)
                      +|...
T Consensus       474 ydm~~  478 (668)
T COG4946         474 YDMDG  478 (668)
T ss_pred             EecCC
Confidence            88754

>KOG4532|consensus

Probab=98.90  E-value=4.1e-07  Score=66.40  Aligned_cols=149  Identities=15%  Similarity=0.190  Sum_probs=106.8

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-c-EEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-K-LEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-~-~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      ..+.++++++|++++++.++...|-+|.+... . .+.... ...+.-.+.+|+.....+|++..||.+.+||++.    
T Consensus       159 ~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tp  238 (344)
T KOG4532|consen  159 LTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATP  238 (344)
T ss_pred             cceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccc
Confidence            44788999999999999999999999988643 2 223222 2222234789999999999999999999999862    


Q ss_pred             ---------CCcccEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCceeeeee--------c-CCcEEEEEEccCCCEEE
Q psy10953         85 ---------GHSSWVLSTAFTRDG--KFFISASADHTVRVWNFARRENMHTFK--------H-ADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        85 ---------~~~~~v~~~~~s~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~-~~~v~~~~~sp~g~~l~  144 (181)
                               .|.+.++.+.|++-|  .+|+-...-+.+.+.|+++......+.        | ...+.+.+|+.++..+.
T Consensus       239 m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~  318 (344)
T KOG4532|consen  239 MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESND  318 (344)
T ss_pred             hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEecCccccccccccccccccccCCCcccc
Confidence                     367889999999876  366666667889999999875433321        2 23477788888877776


Q ss_pred             EEcCCCcEEEEeCCCCe
Q psy10953        145 SVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~  161 (181)
                      +..++ .+.=|++....
T Consensus       319 v~~e~-~~ae~ni~srs  334 (344)
T KOG4532|consen  319 VKNEL-QGAEYNILSRS  334 (344)
T ss_pred             cccch-hhheeeccccc
Confidence            65543 34445554433

>KOG1240|consensus

Probab=98.89  E-value=3.3e-07  Score=78.46  Aligned_cols=156  Identities=13%  Similarity=0.191  Sum_probs=110.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EE-----EEe--cCCceEEEEEECC-CCC-EEEEeeCCCcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL--EQ-----IFD--TRGKFTLSIAYST-DGH-WIASGALDGIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~--~~-----~~~--~~~~~~~~~~~s~-d~~-~l~~~~~d~~v~i~d   81 (181)
                      .+..+.+.+++..+|.++.||.|++.++.-.+.  ..     ...  ..+..+..-++.. ++. .++.+...+.+..||
T Consensus      1100 r~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D 1179 (1431)
T KOG1240|consen 1100 RVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWD 1179 (1431)
T ss_pred             ceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEec
Confidence            356788888999999999999999999875221  11     111  1123232223322 233 677788889999999


Q ss_pred             CCCCC----------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--CcEEEEEEccC---CCEEEEE
Q psy10953         82 ANTGH----------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA--DQVWCVCVAPD---GDKFVSV  146 (181)
Q Consensus        82 ~~~~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--~~v~~~~~sp~---g~~l~~~  146 (181)
                      +++.|          .+.|++++.+|.+++++.|+..|.+.+||++-+.++..+.|+  .+++.++..|-   ....+++
T Consensus      1180 ~r~~~~~w~lk~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~ 1259 (1431)
T KOG1240|consen 1180 TRMRHDAWRLKNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSA 1259 (1431)
T ss_pred             chhhhhHHhhhcCccccceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEe
Confidence            97543          467999999999999999999999999999988888887654  45666665553   3455544


Q ss_pred             c--CCCcEEEEeCCCCeeEEEcCC
Q psy10953        147 G--EDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       147 ~--~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +  ..+.|-+|++.+|....+.--
T Consensus      1260 ~~~~~nevs~wn~~~g~~~~vl~~ 1283 (1431)
T KOG1240|consen 1260 GSSSNNEVSTWNMETGLRQTVLWA 1283 (1431)
T ss_pred             cccCCCceeeeecccCcceEEEEc
Confidence            4  478999999998865544433

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=98.87  E-value=9.7e-07  Score=77.34  Aligned_cols=154  Identities=10%  Similarity=0.139  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEEec-------CC---------ceEEEEEECC-CCCEEEEeeCCC
Q psy10953         14 MWNVVFSPDDKYVLSGS-QSGKINLYGVETGKLEQIFDT-------RG---------KFTLSIAYST-DGHWIASGALDG   75 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~~~~~~~~-------~~---------~~~~~~~~s~-d~~~l~~~~~d~   75 (181)
                      ...++++++++.|+.+. ..+.|+.+|..++........       .+         .....++++| ++..+++...++
T Consensus       626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~  705 (1057)
T PLN02919        626 PQGLAYNAKKNLLYVADTENHALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQH  705 (1057)
T ss_pred             CcEEEEeCCCCEEEEEeCCCceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCC
Confidence            47899999988766554 456799999887664332110       00         1124789999 556666777788


Q ss_pred             cEEEEeCCCCC----------------------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeee-------
Q psy10953         76 IINIFDANTGH----------------------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTF-------  125 (181)
Q Consensus        76 ~v~i~d~~~~~----------------------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~-------  125 (181)
                      .|++||...+.                      -.....++++|+|+ ++++-+.++.|++||+.++......       
T Consensus       706 ~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~  785 (1057)
T PLN02919        706 QIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFS  785 (1057)
T ss_pred             eEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccC
Confidence            99999875421                      01345689999998 5556666789999998865422110       


Q ss_pred             ------e---------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        126 ------K---------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       126 ------~---------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                            .         .-....+++++++|+.+++-..++.|++|+..++....+.+
T Consensus       786 ~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~tiaG  842 (1057)
T PLN02919        786 DNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVTTLAG  842 (1057)
T ss_pred             cccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEEEEec
Confidence                  0         01134689999999988888889999999998776554443

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=98.84  E-value=1.9e-06  Score=64.76  Aligned_cols=157  Identities=15%  Similarity=0.198  Sum_probs=103.2

Q ss_pred             eeccCeeeEE--EEEEcCCCCEEEEEeCC-----CcEEEEeCC-CCcEEEEEecCCceEEEEEECCCCCEEEEeeC----
Q psy10953          6 KINVGPVDMW--NVVFSPDDKYVLSGSQS-----GKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL----   73 (181)
Q Consensus         6 ~~~~~~~~~~--~~~~s~~g~~l~~~~~d-----~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~----   73 (181)
                      .+..++.-.+  .-.|||||++|++.-.|     |.|-+||.. +.+.+..+..++--.-.+.+.|||+.|+.+..    
T Consensus        43 ~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~T  122 (305)
T PF07433_consen   43 RLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIET  122 (305)
T ss_pred             EEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCcc
Confidence            3444444333  36799999999987554     689999998 55666777766544446889999988876532    


Q ss_pred             --------------CCcEEEEeCCCC------------CcccEEEEEEcCCCCEEEEEeCCCc-------EEEEecCCCc
Q psy10953         74 --------------DGIINIFDANTG------------HSSWVLSTAFTRDGKFFISASADHT-------VRVWNFARRE  120 (181)
Q Consensus        74 --------------d~~v~i~d~~~~------------~~~~v~~~~~s~~~~~l~~~~~d~~-------i~v~d~~~~~  120 (181)
                                    +..+.+.|..++            |..+++.+++.++|..++..-..+.       +.+++.  +.
T Consensus       123 hpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~--g~  200 (305)
T PF07433_consen  123 HPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR--GG  200 (305)
T ss_pred             CcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC--CC
Confidence                          123444444432            4457889999999887655443332       333332  22


Q ss_pred             eeeeee--------cCCcEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeeEE
Q psy10953        121 NMHTFK--------HADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYKPEEEVE  164 (181)
Q Consensus       121 ~~~~~~--------~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~~~~~~~  164 (181)
                      .+..+.        ..+.+-+++++++|..+++.|- .+.+.+|+..++..+.
T Consensus       201 ~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~  253 (305)
T PF07433_consen  201 ALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLG  253 (305)
T ss_pred             cceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEee
Confidence            222221        2356889999999999988885 5789999988876543

>KOG2695|consensus

Probab=98.84  E-value=1.6e-08  Score=75.87  Aligned_cols=147  Identities=18%  Similarity=0.313  Sum_probs=107.1

Q ss_pred             EEEEEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-------
Q psy10953         15 WNVVFSPD--DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------   85 (181)
Q Consensus        15 ~~~~~s~~--g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-------   85 (181)
                      |.++|+-+  |-. ++.+.+..+-+-++++|-. +.|...++ +....|.-.+..+..|..+|.|..+|++..       
T Consensus       215 ~~CawSlni~gyh-fs~G~sqqv~L~nvetg~~-qsf~sksD-VfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~  291 (425)
T KOG2695|consen  215 WSCAWSLNIMGYH-FSVGLSQQVLLTNVETGHQ-QSFQSKSD-VFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC  291 (425)
T ss_pred             hhhhhhhccceee-ecccccceeEEEEeecccc-cccccchh-HHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc
Confidence            55566633  223 4566678888999987754 33443333 457788887888999999999999999753       


Q ss_pred             -----CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCce---eeeeecCCcEEE-----EEEccCCCEEEEEcCCCc
Q psy10953         86 -----HSSWVLSTAFTR-DGKFFISASADHTVRVWNFARREN---MHTFKHADQVWC-----VCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        86 -----~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~~~~~v~~-----~~~sp~g~~l~~~~~d~~  151 (181)
                           |.+.|++++.-. ++++|.+.+.+|+|++||++.-+.   +.++.  +.|+.     +-+.+....+++++.|.-
T Consensus       292 a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYe--GHvN~~a~l~~~v~~eeg~I~s~GdDcy  369 (425)
T KOG2695|consen  292 AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYE--GHVNLSAYLPAHVKEEEGSIFSVGDDCY  369 (425)
T ss_pred             eEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeee--cccccccccccccccccceEEEccCeeE
Confidence                 456677777666 678899999999999999987554   44443  33332     334667788999999999


Q ss_pred             EEEEeCCCCeeEEEc
Q psy10953        152 VHMYSYKPEEEVEVN  166 (181)
Q Consensus       152 v~i~~~~~~~~~~~~  166 (181)
                      .++|.++.++.+...
T Consensus       370 tRiWsl~~ghLl~ti  384 (425)
T KOG2695|consen  370 TRIWSLDSGHLLCTI  384 (425)
T ss_pred             EEEEecccCceeecc
Confidence            999999988776543

>KOG4532|consensus

Probab=98.81  E-value=9.8e-07  Score=64.47  Aligned_cols=139  Identities=12%  Similarity=0.064  Sum_probs=96.2

Q ss_pred             EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-----------cccEEEEE
Q psy10953         26 VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-----------SSWVLSTA   94 (181)
Q Consensus        26 l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-----------~~~v~~~~   94 (181)
                      +..++.|+++++.++..+......-...--..++.+++|++++++.+....|..|.+....           ...-.+..
T Consensus       131 ~~i~sndht~k~~~~~~~s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S  210 (344)
T KOG4532|consen  131 LNIASNDHTGKTMVVSGDSNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNS  210 (344)
T ss_pred             eeeccCCcceeEEEEecCcccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeee
Confidence            4567888999988876544322211111124578999999999999988899999875321           11124567


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCceee-ee----e-cCCcEEEEEEccCCCE--EEEEcCCCcEEEEeCCCCeeEE
Q psy10953         95 FTRDGKFFISASADHTVRVWNFARRENMH-TF----K-HADQVWCVCVAPDGDK--FVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus        95 ~s~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~----~-~~~~v~~~~~sp~g~~--l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      |+.....+|++..||++.|||++....+. ..    + |.+.++.+.|+|.|-.  |.-.-.-+.+++-|++.+....
T Consensus       211 ~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q  288 (344)
T KOG4532|consen  211 FSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ  288 (344)
T ss_pred             eccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence            88888999999999999999998643222 11    2 6678999999987653  3333345688999988775443

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.74  E-value=4e-08  Score=51.21  Aligned_cols=38  Identities=24%  Similarity=0.498  Sum_probs=35.2

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYG   39 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d   39 (181)
                      +.+..+..+...+.+++|+|+++++++++.|++|++||
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            35678889999999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>KOG4497|consensus

Probab=98.74  E-value=1.5e-07  Score=70.49  Aligned_cols=116  Identities=18%  Similarity=0.253  Sum_probs=77.9

Q ss_pred             eeccCeeeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC----------
Q psy10953          6 KINVGPVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD----------   74 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d----------   74 (181)
                      +++-++...+.++|||||+.+ .+...|-.|.+|.+.+.+...+ ......+...+|+|||+..+..+.-          
T Consensus        86 kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~  164 (447)
T KOG4497|consen   86 KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISS  164 (447)
T ss_pred             EeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEe-cccccCceeEEECCCCceeeeeecccHHHHHHHHh
Confidence            455567778899999999665 5777899999999987765432 2223334567888888766544321          


Q ss_pred             --------------------------CcEEEEeCCCC------Cc-ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q psy10953         75 --------------------------GIINIFDANTG------HS-SWVLSTAFTRDGKFFISASADHTVRVWNFARREN  121 (181)
Q Consensus        75 --------------------------~~v~i~d~~~~------~~-~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~  121 (181)
                                                +.+.+||-.-.      |. -.+..+.|+|.+++++.|+.|+.+++.|--+.+.
T Consensus       165 c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~  244 (447)
T KOG4497|consen  165 CKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP  244 (447)
T ss_pred             hHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence                                      12334442211      11 2356689999999999999999999887554443


Q ss_pred             e
Q psy10953        122 M  122 (181)
Q Consensus       122 ~  122 (181)
                      +
T Consensus       245 f  245 (447)
T KOG4497|consen  245 F  245 (447)
T ss_pred             h
Confidence            3

>KOG0280|consensus

Probab=98.72  E-value=4.7e-07  Score=66.75  Aligned_cols=156  Identities=13%  Similarity=0.228  Sum_probs=95.8

Q ss_pred             eeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCcEEEE-EecCCceEEEEEECC-CCCEEEEeeCCCcEEE
Q psy10953          4 ISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVE-TGKLEQI-FDTRGKFTLSIAYST-DGHWIASGALDGIINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~-~~~~~~~-~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i   79 (181)
                      -+....++.+.|-+.|+. +.+++.+|++|+.+..||++ .++.+.. -..|..-+.++.-+| ++.++++|+.|-.+++
T Consensus       158 vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~  237 (339)
T KOG0280|consen  158 VQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV  237 (339)
T ss_pred             cccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeeecceeeecceEEEecCCCCCceEEEeccccceee
Confidence            345666888899999985 44677899999999999998 4443321 112333344554444 6789999999999999


Q ss_pred             EeCCC-C-------CcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCcee--eeee----cCCcEEEEEEccCCCEE
Q psy10953         80 FDANT-G-------HSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENM--HTFK----HADQVWCVCVAPDGDKF  143 (181)
Q Consensus        80 ~d~~~-~-------~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~--~~~~----~~~~v~~~~~sp~g~~l  143 (181)
                      ||.+. +       -.+.|..+..+|.  +++|+++..+| .++.+......-  ..+.    |.+-.++..+.....++
T Consensus       238 ~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~l  316 (339)
T KOG0280|consen  238 LDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFL  316 (339)
T ss_pred             eehhcccCccccCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeecccccccccee
Confidence            99873 1       2356777888885  34555555554 455555433211  1111    22223333343333567


Q ss_pred             EEEc-CCCcEE-EEeCCCC
Q psy10953        144 VSVG-EDKAVH-MYSYKPE  160 (181)
Q Consensus       144 ~~~~-~d~~v~-i~~~~~~  160 (181)
                      ++++ .|+.++ +|=--++
T Consensus       317 ATCsFYDk~~~~~Wl~~t~  335 (339)
T KOG0280|consen  317 ATCSFYDKKIRQLWLHITG  335 (339)
T ss_pred             eeeeccccceeeeeeeccC
Confidence            8776 477744 6654333

>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=98.70  E-value=7.7e-08  Score=50.10  Aligned_cols=37  Identities=22%  Similarity=0.513  Sum_probs=32.6

Q ss_pred             ceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953        120 ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus       120 ~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      +++.++. |.+.|++++|+|++++|++++.|+.|++|+
T Consensus         2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd   39 (39)
T PF00400_consen    2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD   39 (39)
T ss_dssp             EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred             eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence            3455565 788999999999999999999999999997

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.67  E-value=3.3e-06  Score=67.61  Aligned_cols=73  Identities=16%  Similarity=0.196  Sum_probs=61.3

Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         87 SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        87 ~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ...|.+++++|+.+.++.|+.||.|.+||...+..... +..-.+..++|+|+|..+++|+..|.+++||+...
T Consensus       259 ~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t~~~-ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs  331 (545)
T PF11768_consen  259 PSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVTLLA-KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS  331 (545)
T ss_pred             CCcceEEecCcccceEEEEecCCeEEEEEcCCCeeeee-eecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence            34678899999999999999999999999877643322 44456788999999999999999999999998543

>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]

Probab=98.66  E-value=1.2e-05  Score=60.96  Aligned_cols=146  Identities=14%  Similarity=0.368  Sum_probs=102.0

Q ss_pred             EEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEe---cCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC---
Q psy10953         14 MWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKLEQIFD---TRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANTG---   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~~---   85 (181)
                      +....|.|++++|++.+- ..+|.+|++..|++...-.   ..+.-.+-+.|+|+++....... +++|.+|.....   
T Consensus       147 ~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~  226 (346)
T COG2706         147 VHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGK  226 (346)
T ss_pred             cceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCce
Confidence            567889999999987653 3489999999887754222   22332346899999998776544 788999876542   


Q ss_pred             ---------------CcccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCC-ceeeee---e-cCCcEEEEEEccCCCEEE
Q psy10953         86 ---------------HSSWVLSTAFTRDGKFFISASAD-HTVRVWNFARR-ENMHTF---K-HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        86 ---------------~~~~v~~~~~s~~~~~l~~~~~d-~~i~v~d~~~~-~~~~~~---~-~~~~v~~~~~sp~g~~l~  144 (181)
                                     ...+..++.++|+|++|.++... ..|.+|.+... ..+...   . +....+...|+|+|++|+
T Consensus       227 ~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Li  306 (346)
T COG2706         227 FEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLI  306 (346)
T ss_pred             EEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEE
Confidence                           12356678999999999887753 35777765432 222222   2 333478899999999999


Q ss_pred             EEcCC-CcEEEEeCCC
Q psy10953        145 SVGED-KAVHMYSYKP  159 (181)
Q Consensus       145 ~~~~d-~~v~i~~~~~  159 (181)
                      ++.++ ..|.+|.+..
T Consensus       307 aa~q~sd~i~vf~~d~  322 (346)
T COG2706         307 AANQKSDNITVFERDK  322 (346)
T ss_pred             EEccCCCcEEEEEEcC
Confidence            99975 4788888754

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.66  E-value=5.2e-06  Score=67.88  Aligned_cols=114  Identities=18%  Similarity=0.246  Sum_probs=74.7

Q ss_pred             CcEEEEeCCC-----CcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCc-------------------
Q psy10953         33 GKINLYGVET-----GKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTGHS-------------------   87 (181)
Q Consensus        33 ~~i~~~d~~~-----~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~~-------------------   87 (181)
                      ++|.+.|.++     .+....+..... ...+.++|||+++++ +..+++|.++|+.+...                   
T Consensus       296 n~V~VID~~t~~~~~~~v~~yIPVGKs-PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG  374 (635)
T PRK02888        296 SKVPVVDGRKAANAGSALTRYVPVPKN-PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG  374 (635)
T ss_pred             CEEEEEECCccccCCcceEEEEECCCC-ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence            4577777776     344444443333 358999999998876 55689999999865221                   


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------CceeeeeecCCcEEEEE------EccCCCEEEEEc
Q psy10953         88 SWVLSTAFTRDGKFFISASADHTVRVWNFAR----------RENMHTFKHADQVWCVC------VAPDGDKFVSVG  147 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~----------~~~~~~~~~~~~v~~~~------~sp~g~~l~~~~  147 (181)
                      ......+|+++|+.+.+.-.|..|..||+..          ...+..+.-...+-.+.      -.|||++|++..
T Consensus       375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n  450 (635)
T PRK02888        375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN  450 (635)
T ss_pred             CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence            1235678999999888888999999999865          22222232111122222      268888888755

>KOG1334|consensus

Probab=98.65  E-value=1.3e-07  Score=73.72  Aligned_cols=155  Identities=18%  Similarity=0.255  Sum_probs=117.8

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCC--CCEEEEeeCCCcEEEEe
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTD--GHWIASGALDGIINIFD   81 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d--~~~l~~~~~d~~v~i~d   81 (181)
                      .+|..++.-+..+.|...|..|++|++|..|.+||=..++....+.. |...+....|-|.  .+.+++.+.||.|++=.
T Consensus       136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~  215 (559)
T KOG1334|consen  136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE  215 (559)
T ss_pred             hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence            35666777788999999999999999999999999877776555432 3333445566663  46789999999998876


Q ss_pred             CC-----------CCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeee----ecCC---cEEEEEEccCCC-
Q psy10953         82 AN-----------TGHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTF----KHAD---QVWCVCVAPDGD-  141 (181)
Q Consensus        82 ~~-----------~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~---~v~~~~~sp~g~-  141 (181)
                      +.           ..|.+.|..++..|+. ..|.+++.|+.+.=+|++...+...+    .+..   ..++++..|... 
T Consensus       216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~  295 (559)
T KOG1334|consen  216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN  295 (559)
T ss_pred             eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence            52           2467888899999975 57889999999999999876433322    2333   467888899766 


Q ss_pred             EEEEEcCCCcEEEEeCCC
Q psy10953        142 KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~  159 (181)
                      .+++++.|..+++|+...
T Consensus       296 ~faVgG~dqf~RvYD~R~  313 (559)
T KOG1334|consen  296 EFAVGGSDQFARVYDQRR  313 (559)
T ss_pred             ccccCChhhhhhhhcccc
Confidence            688899999999999753

>KOG2041|consensus

Probab=98.65  E-value=5.7e-07  Score=73.56  Aligned_cols=150  Identities=14%  Similarity=0.213  Sum_probs=114.6

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE---------------EEEEecCCceEEEEEECCCCCEEEEeeCC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL---------------EQIFDTRGKFTLSIAYSTDGHWIASGALD   74 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~---------------~~~~~~~~~~~~~~~~s~d~~~l~~~~~d   74 (181)
                      +..+..+++|..+..+++.|+.||.+++..+.+...               -+.+..|...+.-+.|..+.+.|-+...+
T Consensus        13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~   92 (1189)
T KOG2041|consen   13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTS   92 (1189)
T ss_pred             CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCC
Confidence            445678999999999999999999999997754321               13445566677788999999999999999


Q ss_pred             CcEEEEeCCCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE
Q psy10953         75 GIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        75 ~~v~i~d~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                      |.+.+|-+.++          .++.|.++.|..+|+.+.-.=.||.|-+=.+...+....--.......+-+|+|.+.+.
T Consensus        93 GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~L  172 (1189)
T KOG2041|consen   93 GLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQAL  172 (1189)
T ss_pred             ceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHHH
Confidence            99999987543          45678999999999998888888888777665433221111122344677899999888


Q ss_pred             EEcCCCcEEEEeCCC
Q psy10953        145 SVGEDKAVHMYSYKP  159 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~  159 (181)
                      .+-.+|.+++|+...
T Consensus       173 f~~ange~hlydnqg  187 (1189)
T KOG2041|consen  173 FKKANGETHLYDNQG  187 (1189)
T ss_pred             hhhcCCcEEEecccc
Confidence            888899999999753

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.64  E-value=2.9e-05  Score=57.29  Aligned_cols=137  Identities=19%  Similarity=0.295  Sum_probs=91.8

Q ss_pred             EEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEEC-CCCCEEEEeeCCCcEEEEeCCCC--------
Q psy10953         16 NVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYS-TDGHWIASGALDGIINIFDANTG--------   85 (181)
Q Consensus        16 ~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s-~d~~~l~~~~~d~~v~i~d~~~~--------   85 (181)
                      ++.|.+ +|.++++--..+.|..|+..+++... +....  ..++.+. +++++++ +...+ +.++|..++        
T Consensus         4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~~--~~G~~~~~~~g~l~v-~~~~~-~~~~d~~~g~~~~~~~~   78 (246)
T PF08450_consen    4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLPG--PNGMAFDRPDGRLYV-ADSGG-IAVVDPDTGKVTVLADL   78 (246)
T ss_dssp             EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESSS--EEEEEEECTTSEEEE-EETTC-EEEEETTTTEEEEEEEE
T ss_pred             ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecCC--CceEEEEccCCEEEE-EEcCc-eEEEecCCCcEEEEeec
Confidence            456887 77777777788999999998876543 33333  3477777 6655444 44444 344476543        


Q ss_pred             -----CcccEEEEEEcCCCCEEEEEeCC--------CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE-EEcCCCc
Q psy10953         86 -----HSSWVLSTAFTRDGKFFISASAD--------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV-SVGEDKA  151 (181)
Q Consensus        86 -----~~~~v~~~~~s~~~~~l~~~~~d--------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~~  151 (181)
                           .....+.++++|+|++.++....        +.++.++.. ++.......-...+.++|+|+++.|+ +-+..+.
T Consensus        79 ~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~  157 (246)
T PF08450_consen   79 PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGR  157 (246)
T ss_dssp             ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTE
T ss_pred             cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeecccccce
Confidence                 23457889999999988877654        457777776 44333333445688999999999776 4556788


Q ss_pred             EEEEeCC
Q psy10953        152 VHMYSYK  158 (181)
Q Consensus       152 v~i~~~~  158 (181)
                      |..+++.
T Consensus       158 i~~~~~~  164 (246)
T PF08450_consen  158 IWRFDLD  164 (246)
T ss_dssp             EEEEEEE
T ss_pred             eEEEecc
Confidence            9988885

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species

Probab=98.63  E-value=7e-05  Score=55.27  Aligned_cols=146  Identities=18%  Similarity=0.264  Sum_probs=96.0

Q ss_pred             EEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEECCCCCEEEEeeCC--------CcEEE
Q psy10953         14 MWNVVFS-PDDKYVLSGSQSGKINLYGVETGKLEQIFDT-----RGKFTLSIAYSTDGHWIASGALD--------GIINI   79 (181)
Q Consensus        14 ~~~~~~s-~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~s~d~~~l~~~~~d--------~~v~i   79 (181)
                      ...+++. ++|+++ .+.. +.+.++|..+++.......     .......++++|+|+..++-...        +.++.
T Consensus        42 ~~G~~~~~~~g~l~-v~~~-~~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~  119 (246)
T PF08450_consen   42 PNGMAFDRPDGRLY-VADS-GGIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYR  119 (246)
T ss_dssp             EEEEEEECTTSEEE-EEET-TCEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEE
T ss_pred             CceEEEEccCCEEE-EEEc-CceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEE
Confidence            5677787 665554 4444 4556669999887766554     22345689999999977765433        45777


Q ss_pred             EeCCCCC-------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCce-------eeeeecC-CcEEEEEEccCCCEE
Q psy10953         80 FDANTGH-------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARREN-------MHTFKHA-DQVWCVCVAPDGDKF  143 (181)
Q Consensus        80 ~d~~~~~-------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~-------~~~~~~~-~~v~~~~~sp~g~~l  143 (181)
                      ++.. +.       ....+.++|+|+++.| ++-+..+.|..|++.....       +..+... +..-.+++.++|+..
T Consensus       120 ~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~  198 (246)
T PF08450_consen  120 IDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLW  198 (246)
T ss_dssp             EETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EE
T ss_pred             ECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEE
Confidence            7776 22       2346789999999865 4666788899999853221       1112222 247789999999988


Q ss_pred             EEEcCCCcEEEEeCCCCeeE
Q psy10953        144 VSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ++.-..+.|.+++.. |+.+
T Consensus       199 va~~~~~~I~~~~p~-G~~~  217 (246)
T PF08450_consen  199 VADWGGGRIVVFDPD-GKLL  217 (246)
T ss_dssp             EEEETTTEEEEEETT-SCEE
T ss_pred             EEEcCCCEEEEECCC-ccEE
Confidence            877778899999987 5444

These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.60  E-value=4.6e-06  Score=66.24  Aligned_cols=159  Identities=19%  Similarity=0.209  Sum_probs=98.8

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeC---C-CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCc--EEEE
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQ---S-GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGI--INIF   80 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~---d-~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~--v~i~   80 (181)
                      ......+..-+|+|+++.++....   . ..+.++++.+++........+.. ....|+|||+.|+. ...|+.  ++++
T Consensus       189 ~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~-~~P~fspDG~~l~f~~~rdg~~~iy~~  267 (425)
T COG0823         189 TDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNN-GAPAFSPDGSKLAFSSSRDGSPDIYLM  267 (425)
T ss_pred             cccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCcc-CCccCCCCCCEEEEEECCCCCccEEEE
Confidence            333444455679999998875532   2 35889999988877766644433 35799999988775 455554  5556


Q ss_pred             eCCCCCcc-------cEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC-
Q psy10953         81 DANTGHSS-------WVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED-  149 (181)
Q Consensus        81 d~~~~~~~-------~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  149 (181)
                      |+..+...       .-..-.|+|+|+.++..+. .|  .|.++|...............-..-.+||||++|+..+.. 
T Consensus       268 dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~  347 (425)
T COG0823         268 DLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSG  347 (425)
T ss_pred             cCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEEEeccC
Confidence            66543211       1124579999998776664 44  4666676665543222222222267789999999887743 


Q ss_pred             Cc--EEEEeCCCCeeEEEcC
Q psy10953        150 KA--VHMYSYKPEEEVEVNG  167 (181)
Q Consensus       150 ~~--v~i~~~~~~~~~~~~~  167 (181)
                      +.  |.+.++.++...++..
T Consensus       348 g~~~i~~~~~~~~~~~~~lt  367 (425)
T COG0823         348 GQWDIDKNDLASGGKIRILT  367 (425)
T ss_pred             CceeeEEeccCCCCcEEEcc
Confidence            43  6666665554333333

>KOG1275|consensus

Probab=98.59  E-value=2.6e-06  Score=71.33  Aligned_cols=137  Identities=10%  Similarity=0.162  Sum_probs=103.6

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---------CCcEEEEeCCCCC---
Q psy10953         19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---------DGIINIFDANTGH---   86 (181)
Q Consensus        19 ~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---------d~~v~i~d~~~~~---   86 (181)
                      +-.+++.+.+|...|+|.+-|.++-+.++.+..|...+  ..|+-.|+.|++.+.         |..|++||++.-.   
T Consensus       183 mR~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~si--SDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~  260 (1118)
T KOG1275|consen  183 MRYNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSI--SDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALS  260 (1118)
T ss_pred             EEecCcEEEeecccceEEeecCCcCceeeeeeccccce--eeeeccCCeEEEeecccccccccccchhhhhhhhhhhccC
Confidence            44588999999999999999999999999999988866  456778999988654         6779999997421   


Q ss_pred             ----cccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCc-e---eeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         87 ----SSWVLSTAFTRDG-KFFISASADHTVRVWNFARRE-N---MHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        87 ----~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~-~---~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                          .....-+.|.|.- ..++.++..|...+.|..+.. +   +..+ +....+...++|++|+.++.+..+|.|.+|.
T Consensus       261 PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa  340 (1118)
T KOG1275|consen  261 PIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA  340 (1118)
T ss_pred             CcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence                1112345677753 356777788999999844321 1   1112 2344588999999999999999999999999


Q ss_pred             C
Q psy10953        157 Y  157 (181)
Q Consensus       157 ~  157 (181)
                      -
T Consensus       341 ~  341 (1118)
T KOG1275|consen  341 D  341 (1118)
T ss_pred             C
Confidence            4

>KOG3914|consensus

Probab=98.58  E-value=5.2e-07  Score=68.82  Aligned_cols=73  Identities=25%  Similarity=0.436  Sum_probs=60.0

Q ss_pred             CCceEEEEEECCCCCEEEEeeCCCcEEEEeCC---------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee
Q psy10953         52 RGKFTLSIAYSTDGHWIASGALDGIINIFDAN---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM  122 (181)
Q Consensus        52 ~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~  122 (181)
                      |-..+..+.++||++.++++..|..|++-...         -||+..|..+++.++ +.|++++-|+++++||+++++.+
T Consensus       150 hvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk~L  228 (390)
T KOG3914|consen  150 HVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGKLL  228 (390)
T ss_pred             hhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCCcc
Confidence            34456789999999999999999999987643         368888888887664 56899999999999999998776


Q ss_pred             eee
Q psy10953        123 HTF  125 (181)
Q Consensus       123 ~~~  125 (181)
                      +++
T Consensus       229 ~t~  231 (390)
T KOG3914|consen  229 DTC  231 (390)
T ss_pred             ccc
Confidence            654

>KOG1832|consensus

Probab=98.58  E-value=2.6e-07  Score=77.12  Aligned_cols=147  Identities=15%  Similarity=0.242  Sum_probs=95.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--------
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--------   74 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--------   74 (181)
                      .+..+..+.....+++|+.+.++|+.|+..|.|++|++.+|........|+..+.-+.-+.||..+++.+.-        
T Consensus      1093 ~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW 1172 (1516)
T KOG1832|consen 1093 SWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALW 1172 (1516)
T ss_pred             cchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHh
Confidence            344555566667899999999999999999999999999999888888887777667777777666553321        


Q ss_pred             ---------------------------------CcEEEEeCCCCCc------------ccEEEEEEcCCCCEEEEEeCCC
Q psy10953         75 ---------------------------------GIINIFDANTGHS------------SWVLSTAFTRDGKFFISASADH  109 (181)
Q Consensus        75 ---------------------------------~~v~i~d~~~~~~------------~~v~~~~~s~~~~~l~~~~~d~  109 (181)
                                                       ..+.+||+.+++.            ..-+.+.|+|+.++++-   ||
T Consensus      1173 ~~~s~~~~~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln---dG 1249 (1516)
T KOG1832|consen 1173 DASSTGGPRHSFDEDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN---DG 1249 (1516)
T ss_pred             ccccccCccccccccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee---Cc
Confidence                                             1233444433321            01134566666665542   22


Q ss_pred             cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       110 ~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                        .+||.+..+.++.|..-..-..-.|+|.|..++..+     .|||+++
T Consensus      1250 --vLWDvR~~~aIh~FD~ft~~~~G~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQFTDYGGGGFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred             --eeeeeccHHHHhhhhhheecccccccCCCceEEeec-----hhhhhHH
Confidence              467777666666554222222446788888777766     4677654

>KOG2315|consensus

Probab=98.56  E-value=2.2e-06  Score=68.06  Aligned_cols=124  Identities=17%  Similarity=0.363  Sum_probs=83.7

Q ss_pred             eeeEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC---CcEEEEeCCCC
Q psy10953         11 PVDMWNVVFSPDDKYVLS--GSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD---GIINIFDANTG   85 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d---~~v~i~d~~~~   85 (181)
                      ...|.++.|+|+|+-+++  |-.=.++.+||++ ++.+..+  .......+-|+|.|++++.++.+   |.+-+||+.+.
T Consensus       270 ~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr-~~~v~df--~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~  346 (566)
T KOG2315|consen  270 EGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLR-GKPVFDF--PEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNR  346 (566)
T ss_pred             CCCceEEEECCCCCEEEEEEecccceEEEEcCC-CCEeEeC--CCCCccceEECCCCCEEEEeecCCCCCceEEEeccch
Confidence            455899999999988754  3344689999987 4433333  23333579999999998877654   78999998753


Q ss_pred             C------cccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCceeeeeecCCcEEEEEEcc
Q psy10953         86 H------SSWVLSTAFTRDGKFFISASA------DHTVRVWNFARRENMHTFKHADQVWCVCVAP  138 (181)
Q Consensus        86 ~------~~~v~~~~~s~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp  138 (181)
                      +      ....+-+.|+|||++++|++.      |..++||+... ..++......+.+.++|-|
T Consensus       347 K~i~~~~a~~tt~~eW~PdGe~flTATTaPRlrvdNg~KiwhytG-~~l~~~~f~sEL~qv~W~P  410 (566)
T KOG2315|consen  347 KLIAKFKAANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYTG-SLLHEKMFKSELLQVEWRP  410 (566)
T ss_pred             hhccccccCCceEEEEcCCCcEEEEEeccccEEecCCeEEEEecC-ceeehhhhhHhHhheeeee
Confidence            2      223456789999999998875      57799998743 3333322222344444443

>KOG1409|consensus

Probab=98.56  E-value=1.6e-06  Score=65.28  Aligned_cols=148  Identities=19%  Similarity=0.345  Sum_probs=102.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC-------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA-------   82 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~-------   82 (181)
                      +..-++.+-|+-...++++.+.|+.+..--.+.++-+.-+......+ .+.+.-.  +...|...+.+.+..+       
T Consensus       113 h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t-~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~  189 (404)
T KOG1409|consen  113 HQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPAS-ALQFDAL--YAFVGDHSGQITMLKLEQNGCQL  189 (404)
T ss_pred             hhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCC-CCceeeE--EEEecccccceEEEEEeecCCce
Confidence            44556778888888889999999888776666665443222111110 1111111  2333444555554433       


Q ss_pred             ---CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee--eeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         83 ---NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM--HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        83 ---~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                         ..+|...+.+++|.|..+.|+++..|..+.+||+..++.+  ..+.|.+.|..++.-+--+.+++++.|+.|.+|++
T Consensus       190 i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~m  269 (404)
T KOG1409|consen  190 ITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNM  269 (404)
T ss_pred             EEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEec
Confidence               2468888999999999999999999999999998754432  23347778888887788889999999999999999


Q ss_pred             CCC
Q psy10953        158 KPE  160 (181)
Q Consensus       158 ~~~  160 (181)
                      +-.
T Consensus       270 n~~  272 (404)
T KOG1409|consen  270 NVK  272 (404)
T ss_pred             cce
Confidence            653

>KOG4190|consensus

Probab=98.55  E-value=5.6e-07  Score=71.76  Aligned_cols=159  Identities=14%  Similarity=0.226  Sum_probs=110.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceEEEEEECCCCCEEEEeeCCCc
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-------KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      +.+...+..+++.++--.+.+-+++++.|+++++|.++..       .+...++.|...+.++.|-.+.+.+  ++.|+-
T Consensus       728 L~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i--~ScD~g  805 (1034)
T KOG4190|consen  728 LCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSI--ASCDGG  805 (1034)
T ss_pred             eecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecccee--eeccCc
Confidence            3445566666766665567778899999999999998632       1233455566667777777676655  466899


Q ss_pred             EEEEeCCCC----------CcccEEEEEEcCC--CCEEEE-EeCCCcEEEEecCCCceeeeeec-----C-CcEEEEEEc
Q psy10953         77 INIFDANTG----------HSSWVLSTAFTRD--GKFFIS-ASADHTVRVWNFARRENMHTFKH-----A-DQVWCVCVA  137 (181)
Q Consensus        77 v~i~d~~~~----------~~~~v~~~~~s~~--~~~l~~-~~~d~~i~v~d~~~~~~~~~~~~-----~-~~v~~~~~s  137 (181)
                      +++||.-.+          ..+.+..+..-++  ...+.. ++...+++++|.+...-.+.++.     + .-+.+++.-
T Consensus       806 iHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~iaVa  885 (1034)
T KOG4190|consen  806 IHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIAVA  885 (1034)
T ss_pred             ceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEEec
Confidence            999997422          2223333333443  333333 46788999999998765555541     2 347899999


Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        138 PDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       138 p~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      |.|+.++++-.+|.+.+.|.++|..+.
T Consensus       886 ~~GN~lAa~LSnGci~~LDaR~G~vIN  912 (1034)
T KOG4190|consen  886 DKGNKLAAALSNGCIAILDARNGKVIN  912 (1034)
T ss_pred             cCcchhhHHhcCCcEEEEecCCCceec
Confidence            999999999999999999988876554

>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain

Probab=98.52  E-value=5.5e-05  Score=58.60  Aligned_cols=113  Identities=15%  Similarity=0.182  Sum_probs=81.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC----------CCcEEEEeCCCCC
Q psy10953         22 DDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL----------DGIINIFDANTGH   86 (181)
Q Consensus        22 ~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~----------d~~v~i~d~~~~~   86 (181)
                      ++.+++.....     ++|.+.|..+++.+..+..-.... .+ +||||+.|+.+..          +..|.+||+.+..
T Consensus        11 ~~~~v~V~d~~~~~~~~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~   88 (352)
T TIGR02658        11 DARRVYVLDPGHFAATTQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL   88 (352)
T ss_pred             CCCEEEEECCcccccCceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc
Confidence            55555544433     899999999999988777543333 34 9999998877654          7899999987542


Q ss_pred             c---------------ccEEEEEEcCCCCEEEEEe-C-CCcEEEEecCCCceeeeeecCCcEEEEEE
Q psy10953         87 S---------------SWVLSTAFTRDGKFFISAS-A-DHTVRVWNFARRENMHTFKHADQVWCVCV  136 (181)
Q Consensus        87 ~---------------~~v~~~~~s~~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~~~~~v~~~~~  136 (181)
                      .               .....++++|||++++... . +..+.++|+.+++.+.++.-+++..-...
T Consensus        89 ~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t  155 (352)
T TIGR02658        89 PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT  155 (352)
T ss_pred             EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe
Confidence            1               1223789999999887655 3 78999999999998888876554444443

This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.

>KOG2695|consensus

Probab=98.52  E-value=3e-07  Score=69.19  Aligned_cols=128  Identities=15%  Similarity=0.250  Sum_probs=92.2

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEEeCC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-----LEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ...+|+++.|...++++..|+..|.|..+|++.+.     ..+.+ .|+..+.++..-. +++.|.+.+-+|+|++||++
T Consensus       251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rl-yh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R  329 (425)
T KOG2695|consen  251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRL-YHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLR  329 (425)
T ss_pred             cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEE-EcCcchhhhhhhccccceEeeccCcCceeEeeeh
Confidence            45667888898889999999999999999998652     23333 2455555664433 67788888889999999986


Q ss_pred             CC--------CcccEEE-----EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-----cEEEEEEcc
Q psy10953         84 TG--------HSSWVLS-----TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD-----QVWCVCVAP  138 (181)
Q Consensus        84 ~~--------~~~~v~~-----~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-----~v~~~~~sp  138 (181)
                      --        ..+.|+.     +...+....+++++.|...++|.++.+..+.+++.+.     .+++++|..
T Consensus       330 ~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~s~~e~d~~sv~~~s  402 (425)
T KOG2695|consen  330 ATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPYSASEVDIPSVAFDS  402 (425)
T ss_pred             hhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCCccccccccceehhc
Confidence            21        1122322     3345556788999999999999999999998886432     456666643

>KOG1409|consensus

Probab=98.48  E-value=1.6e-05  Score=60.08  Aligned_cols=159  Identities=18%  Similarity=0.244  Sum_probs=109.6

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +++..+-..+.+...-|...-+++.+.|.++++|--+ .++.-..+-. -......+.+.++.+.|+.|-.+|++.-+.+
T Consensus        18 ~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~~~L~vg~~ngtvtefs~   97 (404)
T KOG1409|consen   18 SKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSESRRLYVGQDNGTVTEFAL   97 (404)
T ss_pred             hhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccceEEEEEEecceEEEEEh
Confidence            4455555566677777888889999999999999543 4444333222 1233457888999999999999999888865


Q ss_pred             C------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC--------------------------------
Q psy10953         83 N------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR--------------------------------  118 (181)
Q Consensus        83 ~------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~--------------------------------  118 (181)
                      .            ..|...+..+-|+...+++++.+.|..+..--.+.                                
T Consensus        98 sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqv  177 (404)
T KOG1409|consen   98 SEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQI  177 (404)
T ss_pred             hhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeEEEEecccccce
Confidence            3            23556677777777777777777665443221110                                


Q ss_pred             ---------Cceeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        119 ---------RENMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       119 ---------~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                               -..+..+ .|.+.+.++++.|..+.+++|+.|..+-+|++.....+
T Consensus       178 t~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g~  232 (404)
T KOG1409|consen  178 TMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKGT  232 (404)
T ss_pred             EEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcce
Confidence                     0111222 36778999999999999999999999999999655443

>KOG1354|consensus

Probab=98.48  E-value=3.9e-06  Score=63.33  Aligned_cols=145  Identities=18%  Similarity=0.293  Sum_probs=100.8

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCc----EEEEEecCCc------------eEEEEEECCCC--CEEEEeeCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVE-TGK----LEQIFDTRGK------------FTLSIAYSTDG--HWIASGALD   74 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~----~~~~~~~~~~------------~~~~~~~s~d~--~~l~~~~~d   74 (181)
                      +.++.|...|.+|++|..+|.|.+|.-. ..+    ....++.|..            -+..+.|.+++  ..++....|
T Consensus        28 is~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLlstNd  107 (433)
T KOG1354|consen   28 ISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLSTND  107 (433)
T ss_pred             eeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEecCC
Confidence            5889999999999999999999999543 332    3334443321            12356776665  467778889


Q ss_pred             CcEEEEeCCC--------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCc
Q psy10953         75 GIINIFDANT--------------------------------------------GHSSWVLSTAFTRDGKFFISASADHT  110 (181)
Q Consensus        75 ~~v~i~d~~~--------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~  110 (181)
                      .++++|.+..                                            .|...|+++.++.|++.++++. |=.
T Consensus       108 ktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSAD-dLR  186 (433)
T KOG1354|consen  108 KTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSAD-DLR  186 (433)
T ss_pred             cceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeecc-cee
Confidence            9999997531                                            1344577889999999888765 668


Q ss_pred             EEEEecCCC-cee--eeee------cCCcEEEEEEccCCC-EEEEEcCCCcEEEEeCCC
Q psy10953        111 VRVWNFARR-ENM--HTFK------HADQVWCVCVAPDGD-KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       111 i~v~d~~~~-~~~--~~~~------~~~~v~~~~~sp~g~-~l~~~~~d~~v~i~~~~~  159 (181)
                      |.+|++.-. +.+  ..++      ....|++..|+|... .|+-.+.-|.|++-|++.
T Consensus       187 INLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~  245 (433)
T KOG1354|consen  187 INLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQ  245 (433)
T ss_pred             eeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechh
Confidence            999998632 222  2222      123588899999754 455566678999999964

>KOG0882|consensus

Probab=98.45  E-value=1.9e-06  Score=66.99  Aligned_cols=156  Identities=19%  Similarity=0.188  Sum_probs=110.8

Q ss_pred             eeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEe--cCCceEEEEEECCCC-C-EEE-EeeCCCcEEEEeCCC-
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKLEQIFD--TRGKFTLSIAYSTDG-H-WIA-SGALDGIINIFDANT-   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~d~-~-~l~-~~~~d~~v~i~d~~~-   84 (181)
                      .-+.+++.+.+|.++.+.+. |+.++++|+.+-....-+.  .-..++ ++..++.. . .++ +...++.+.++|... 
T Consensus        54 ~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lPg~a-~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d  132 (558)
T KOG0882|consen   54 GVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLPGFA-EWVTSKGDKISLIAVSLFKSGKIFVVDGFGD  132 (558)
T ss_pred             HHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCCCce-EEecCCCCeeeeEEeecccCCCcEEECCcCC
Confidence            33566778889999999777 9999999998766542222  122222 34444432 1 233 345678999998652 


Q ss_pred             ---------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC------Cceeeeeec----------CCcEEEEEEccC
Q psy10953         85 ---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR------RENMHTFKH----------ADQVWCVCVAPD  139 (181)
Q Consensus        85 ---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~------~~~~~~~~~----------~~~v~~~~~sp~  139 (181)
                               -|..+|..+.+.|.+...++....|.|.-|....      ......++|          .....+++|+|+
T Consensus       133 ~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~  212 (558)
T KOG0882|consen  133 FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPD  212 (558)
T ss_pred             cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccc
Confidence                     3677899999999999999999999999998763      111111122          235678999999


Q ss_pred             CCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        140 GDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       140 g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      |..+.+-+.|..|+++..+++..+.+.++
T Consensus       213 g~qistl~~DrkVR~F~~KtGklvqeiDE  241 (558)
T KOG0882|consen  213 GAQISTLNPDRKVRGFVFKTGKLVQEIDE  241 (558)
T ss_pred             cCcccccCcccEEEEEEeccchhhhhhhc
Confidence            99999999999999999999876655554

>KOG2314|consensus

Probab=98.45  E-value=9.6e-06  Score=64.69  Aligned_cols=146  Identities=16%  Similarity=0.227  Sum_probs=99.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-----------CCcEEEEeCC
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-----------DGIINIFDAN   83 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-----------d~~v~i~d~~   83 (181)
                      .-+.|||.|.+|++-..- -|.+|--.+-..++.|.+.+.  .-+.|||..++|++-+.           -..+.|||+.
T Consensus       214 tyv~wSP~GTYL~t~Hk~-GI~lWGG~~f~r~~RF~Hp~V--q~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~  290 (698)
T KOG2314|consen  214 TYVRWSPKGTYLVTFHKQ-GIALWGGESFDRIQRFYHPGV--QFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIA  290 (698)
T ss_pred             eeEEecCCceEEEEEecc-ceeeecCccHHHHHhccCCCc--eeeecCCccceEEEecCCccccCcccCCCceEEEEEcc
Confidence            457899999999998755 467786555555566654333  46899999999998653           1578999999


Q ss_pred             CCCcccE-----------EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCC--
Q psy10953         84 TGHSSWV-----------LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGED--  149 (181)
Q Consensus        84 ~~~~~~v-----------~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d--  149 (181)
                      +|+....           --+.||.|++++|.-.. ..|.||+......+..-. ....|..-.|+|.++.||-=...  
T Consensus       291 tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~~  369 (698)
T KOG2314|consen  291 TGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPETN  369 (698)
T ss_pred             ccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEEEccccc
Confidence            8864321           12579999999987776 579999876643332211 23457778888988877654432  


Q ss_pred             ---CcEEEEeCCCCeeEE
Q psy10953        150 ---KAVHMYSYKPEEEVE  164 (181)
Q Consensus       150 ---~~v~i~~~~~~~~~~  164 (181)
                         .++.+-.+.++++++
T Consensus       370 ~~parvtL~evPs~~~iR  387 (698)
T KOG2314|consen  370 NIPARVTLMEVPSKREIR  387 (698)
T ss_pred             CCcceEEEEecCccceee
Confidence               245666666666555

>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats

Probab=98.43  E-value=9.3e-06  Score=65.09  Aligned_cols=105  Identities=21%  Similarity=0.268  Sum_probs=75.5

Q ss_pred             EEEEEEcC-CCCEEEE----EeCCCc----EEEEeCCCCcEEEEEe---cCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         14 MWNVVFSP-DDKYVLS----GSQSGK----INLYGVETGKLEQIFD---TRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~----~~~d~~----i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      ..++.||- ++..+.+    .+.+|.    -.+|++..+++...-.   .....+.+++++|+...|+.|..||.+.+||
T Consensus       208 Pl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD  287 (545)
T PF11768_consen  208 PLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYD  287 (545)
T ss_pred             cEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEE
Confidence            35677775 4444443    333443    4467776665443211   1233456899999999999999999999999


Q ss_pred             CCCCCc------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy10953         82 ANTGHS------SWVLSTAFTRDGKFFISASADHTVRVWNFAR  118 (181)
Q Consensus        82 ~~~~~~------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~  118 (181)
                      ...+-.      -.+..++|+|+|..+++|+..|.+.+||++-
T Consensus       288 ~~~~~t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL  330 (545)
T PF11768_consen  288 TTRGVTLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL  330 (545)
T ss_pred             cCCCeeeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence            876532      2356789999999999999999999999764

>PRK02888 nitrous-oxide reductase; Validated

Probab=98.41  E-value=2.9e-05  Score=63.62  Aligned_cols=142  Identities=14%  Similarity=0.171  Sum_probs=95.0

Q ss_pred             EEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-----------------------
Q psy10953         17 VVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-----------------------   72 (181)
Q Consensus        17 ~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-----------------------   72 (181)
                      +=++|||+.+. +.-..+.+.+.|.++.+....+...+.. ..+.++|||+++++.+                       
T Consensus       198 ~PlpnDGk~l~~~~ey~~~vSvID~etmeV~~qV~Vdgnp-d~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvf  276 (635)
T PRK02888        198 IPLPNDGKDLDDPKKYRSLFTAVDAETMEVAWQVMVDGNL-DNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVF  276 (635)
T ss_pred             cccCCCCCEeecccceeEEEEEEECccceEEEEEEeCCCc-ccceECCCCCEEEEeccCcccCcceeeeccccCceEEEE
Confidence            33566777663 3333456777788776665444433322 3467788888776654                       


Q ss_pred             -----------------CCCcEEEEeCCC----CC--------cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCce-
Q psy10953         73 -----------------LDGIINIFDANT----GH--------SSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARREN-  121 (181)
Q Consensus        73 -----------------~d~~v~i~d~~~----~~--------~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~-  121 (181)
                                       .++.|.+.|..+    +.        ......+.++|||+++++++ .+.++.|+|+...+. 
T Consensus       277 ni~~iea~vkdGK~~~V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~  356 (635)
T PRK02888        277 NIARIEEAVKAGKFKTIGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDL  356 (635)
T ss_pred             chHHHHHhhhCCCEEEECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhh
Confidence                             124577777766    21        12345689999999877666 488999999987442 


Q ss_pred             -----------eeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        122 -----------MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       122 -----------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                                 ..+..........+|+++|+.+.+...|..|..|++..
T Consensus       357 ~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~kwn~~~  405 (635)
T PRK02888        357 FDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA  405 (635)
T ss_pred             hhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence                       23333344556789999999888888999999999864

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=98.38  E-value=5.8e-05  Score=59.69  Aligned_cols=150  Identities=13%  Similarity=0.132  Sum_probs=99.2

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEe-----------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe--eCC
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGS-----------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG--ALD   74 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~-----------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~--~~d   74 (181)
                      ..-..+-..+.|.+.|++|..--           ...++.+++++...+-... ...+.+..++|.|.++.+++.  -..
T Consensus       219 ~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i~V~~-~~~~pVhdf~W~p~S~~F~vi~g~~p  297 (561)
T COG5354         219 NLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSIPVEK-DLKDPVHDFTWEPLSSRFAVISGYMP  297 (561)
T ss_pred             eeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeecccccceec-cccccceeeeecccCCceeEEecccc
Confidence            33344445678899999875321           1246788888744433332 334456789999999887764  456


Q ss_pred             CcEEEEeCCCCC-----cccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceee-eeecCCcEEEEEEccCCCEEEE
Q psy10953         75 GIINIFDANTGH-----SSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMH-TFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        75 ~~v~i~d~~~~~-----~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      ..+.++|++..-     ...=+-+-|+|.+++++.++.|   |++-+||........ .+.- ..-.-+.|+||++++.+
T Consensus       298 a~~s~~~lr~Nl~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~-~n~s~~~wspd~qF~~~  376 (561)
T COG5354         298 ASVSVFDLRGNLRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNG-LNTSYCDWSPDGQFYDT  376 (561)
T ss_pred             cceeecccccceEEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeec-CCceEeeccCCceEEEe
Confidence            777888876421     1111335699999999988865   789999988766554 3332 22344679999999876


Q ss_pred             Ec------CCCcEEEEeCCC
Q psy10953        146 VG------EDKAVHMYSYKP  159 (181)
Q Consensus       146 ~~------~d~~v~i~~~~~  159 (181)
                      .-      .|+.+.||++..
T Consensus       377 ~~ts~k~~~Dn~i~l~~v~g  396 (561)
T COG5354         377 DTTSEKLRVDNSIKLWDVYG  396 (561)
T ss_pred             cCCCcccccCcceEEEEecC
Confidence            54      478899999843

>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]

Probab=98.37  E-value=7.4e-06  Score=65.09  Aligned_cols=133  Identities=20%  Similarity=0.256  Sum_probs=82.2

Q ss_pred             EEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEEEEeCCCCCcc
Q psy10953         15 WNVVFSPDDKYVL-SGSQSGK--INLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IINIFDANTGHSS   88 (181)
Q Consensus        15 ~~~~~s~~g~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~i~d~~~~~~~   88 (181)
                      ..-+|||||++|+ +...|+.  |.++|+.+++..++....+... .-.|+|||++++..+. .|  .|.+++.......
T Consensus       241 ~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~Lt~~~gi~~-~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~  319 (425)
T COG0823         241 GAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPRLTNGFGINT-SPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVT  319 (425)
T ss_pred             CCccCCCCCCEEEEEECCCCCccEEEEcCCCCcceecccCCcccc-CccCCCCCCEEEEEeCCCCCcceEEECCCCCcee
Confidence            4567999999986 4455665  5566777777545333333332 6789999999987643 44  4556666543221


Q ss_pred             cE-------EEEEEcCCCCEEEEEeCC-Cc--EEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         89 WV-------LSTAFTRDGKFFISASAD-HT--VRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        89 ~v-------~~~~~s~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      .+       ....|+|+|++++..+.. +.  |.+.|+.++.....+........-.+.|+|+.+...+.
T Consensus       320 riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~~~~lt~~~~~e~ps~~~ng~~i~~~s~  389 (425)
T COG0823         320 RLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGKIRILTSTYLNESPSWAPNGRMIMFSSG  389 (425)
T ss_pred             EeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCcEEEccccccCCCCCcCCCCceEEEecc
Confidence            11       156799999988877743 43  66666665553333334334445566788877665553

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=98.31  E-value=2.3e-05  Score=58.67  Aligned_cols=149  Identities=19%  Similarity=0.332  Sum_probs=104.9

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cEEEEEec--C-----CceEEEEEECCCC-CEEEEeeCCCcEE
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDT--R-----GKFTLSIAYSTDG-HWIASGALDGIIN   78 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-~~~~~~~~--~-----~~~~~~~~~s~d~-~~l~~~~~d~~v~   78 (181)
                      ..++..+.+++|..|.+.++++ +|-.|.+|++.-- ........  +     ...+.+..|+|.. ..+-..++-|.++
T Consensus       169 NaH~yhiNSiS~NsD~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ik  247 (460)
T COG5170         169 NAHPYHINSISFNSDKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIK  247 (460)
T ss_pred             ccceeEeeeeeecCchheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEE
Confidence            3577778899999998888776 5789999987522 11122221  1     2345678899964 5666788899999


Q ss_pred             EEeCCCC------------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeee-c-----
Q psy10953         79 IFDANTG------------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFK-H-----  127 (181)
Q Consensus        79 i~d~~~~------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~-----  127 (181)
                      +.|++..                        -.+.|..+.|+++|+++++-+. -++++||.... .++.+++ |     
T Consensus       248 l~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~  326 (460)
T COG5170         248 LNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMD  326 (460)
T ss_pred             ehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHH
Confidence            9998721                        1245778999999999987664 48999998754 3455542 2     


Q ss_pred             -------CCcEE---EEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        128 -------ADQVW---CVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       128 -------~~~v~---~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                             .+.|.   .+.||-|.+.+.+|+..+..-+|...
T Consensus       327 ~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~  367 (460)
T COG5170         327 ELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD  367 (460)
T ss_pred             HHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence                   22333   47889899999999998888888743

>KOG4714|consensus

Probab=98.31  E-value=2.6e-06  Score=61.99  Aligned_cols=140  Identities=15%  Similarity=0.207  Sum_probs=88.2

Q ss_pred             cCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEecCCceEEEEEECCCCCEEEEee-----CCCcEEEEeCCCC--------
Q psy10953         20 SPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGA-----LDGIINIFDANTG--------   85 (181)
Q Consensus        20 s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~d~~~l~~~~-----~d~~v~i~d~~~~--------   85 (181)
                      +.-++.++++..|+.+.+++.+... ....+........+.+.-..++.+.++.     .-+..+.|+++..        
T Consensus        98 s~~~t~V~~~~~dg~~~v~s~~~~~~~~~~i~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~~~~  177 (319)
T KOG4714|consen   98 TMTDNRVCIGYADGSLAVFSTDKDLALMSRIPSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPIKTLIPSKK  177 (319)
T ss_pred             cccCCceEecCCCceEEEEechHHHhhhhhcccccccccccceeecccEEecCCcceEeeccceeeeccccccccccccc
Confidence            3356788999999999999876411 1111111110011222222344333321     1234555665422        


Q ss_pred             CcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeee-e-cCCcEEEEEEcc-CCCEEEEEcCCCcEEEEeCCC
Q psy10953         86 HSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTF-K-HADQVWCVCVAP-DGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        86 ~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~v~~~~~sp-~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      ....|.+++-+|..+ .+++|+.||.+-+||.+...-+..+ . |..++|.+-|+| ++..|+++++||.+-.|+-.+
T Consensus       178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            122367777788665 6667778999999999887544333 2 778899999998 578899999999999999764

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.27  E-value=0.00014  Score=53.09  Aligned_cols=140  Identities=21%  Similarity=0.302  Sum_probs=89.8

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEE---------
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVL---------   91 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~---------   91 (181)
                      +++.++++++.++.+..||..+|+.+-.+...+......  ..++..++.+..++.+..+|..+++..+..         
T Consensus        34 ~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~--~~~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~  111 (238)
T PF13360_consen   34 PDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP--VVDGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAG  111 (238)
T ss_dssp             EETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE--EEETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCS
T ss_pred             EeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee--eecccccccccceeeeEecccCCcceeeeeccccccccc
Confidence            466777788899999999999999887666533321111  223455666667888999998777543321         


Q ss_pred             ---EEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-c----------EEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         92 ---STAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD-Q----------VWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        92 ---~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~----------v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                         .......++.++.+..++.+..+|+++++.+....... .          +..-.+..++ .++.++.++.+..++.
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~d~  190 (238)
T PF13360_consen  112 VRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAVDL  190 (238)
T ss_dssp             TB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEEET
T ss_pred             cccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEECC-EEEEEcCCCeEEEEEC
Confidence               11122236777888889999999999999877765322 1          1222233344 6666776665333388


Q ss_pred             CCCeeE
Q psy10953        158 KPEEEV  163 (181)
Q Consensus       158 ~~~~~~  163 (181)
                      .+++.+
T Consensus       191 ~tg~~~  196 (238)
T PF13360_consen  191 ATGEKL  196 (238)
T ss_dssp             TTTEEE
T ss_pred             CCCCEE
Confidence            877643

...

>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal

Probab=98.27  E-value=0.00031  Score=51.95  Aligned_cols=146  Identities=14%  Similarity=0.192  Sum_probs=91.8

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEEecC---CceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC---
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETG--KLEQIFDTR---GKFTLSIAYSTDGHWIASGALDGIINIFDANTGH---   86 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~---~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---   86 (181)
                      |.++.++||+.||.- +|..|.+-..++.  ..+...+..   ...-+.++||||+..||.+...|+|+++|+...+   
T Consensus         1 W~~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~   79 (282)
T PF15492_consen    1 WHLALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFV   79 (282)
T ss_pred             CceeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccceeEE
Confidence            467889999988766 5778888766543  222222221   1223479999999999999999999999986321   


Q ss_pred             -----------cccEEEEEEcCCC------CEEEEEeCCCcEEEEec--C---CCceeeeee----cCCcEEEEEEccCC
Q psy10953         87 -----------SSWVLSTAFTRDG------KFFISASADHTVRVWNF--A---RRENMHTFK----HADQVWCVCVAPDG  140 (181)
Q Consensus        87 -----------~~~v~~~~~s~~~------~~l~~~~~d~~i~v~d~--~---~~~~~~~~~----~~~~v~~~~~sp~g  140 (181)
                                 ...|..+.|.+-.      ..|+.-..+|.++=|-+  .   ..+..+++.    ++..|.+++++|..
T Consensus        80 I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h  159 (282)
T PF15492_consen   80 IPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKH  159 (282)
T ss_pred             cCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCC
Confidence                       1234444444321      13455556666554433  1   223334432    46689999999999


Q ss_pred             CEEEEEcCCC-----------cEEEEeCCCCe
Q psy10953        141 DKFVSVGEDK-----------AVHMYSYKPEE  161 (181)
Q Consensus       141 ~~l~~~~~d~-----------~v~i~~~~~~~  161 (181)
                      +.|+.||...           .+.-|++-.+.
T Consensus       160 ~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~  191 (282)
T PF15492_consen  160 RLLLVGGCEQNQDGMSKASSCGLTAWRILSDS  191 (282)
T ss_pred             CEEEEeccCCCCCccccccccCceEEEEcCCC
Confidence            9988877421           35677765443

>KOG1912|consensus

Probab=98.27  E-value=6.5e-05  Score=62.37  Aligned_cols=142  Identities=18%  Similarity=0.265  Sum_probs=105.4

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC------------CEEEEeeCCCcEEEEe
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG------------HWIASGALDGIINIFD   81 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~------------~~l~~~~~d~~v~i~d   81 (181)
                      -..++|+|.| ++|.|+. ..|.+.|..+-+.++.+..|...+..+.|.|..            -.|+++.-.|.|.+||
T Consensus        18 ~~A~Dw~~~G-LiAygsh-slV~VVDs~s~q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d   95 (1062)
T KOG1912|consen   18 RNAADWSPSG-LIAYGSH-SLVSVVDSRSLQLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVD   95 (1062)
T ss_pred             ccccccCccc-eEEEecC-ceEEEEehhhhhhhhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEE
Confidence            3567788765 5677764 478889999999999999998888899998731            2466778889999999


Q ss_pred             CCC--------CCcccEEEEEEcCC---C-CEEEEEeCCCcEEEEecCCCceeeeeecCCc-EEEEEEcc-CCCEEEEEc
Q psy10953         82 ANT--------GHSSWVLSTAFTRD---G-KFFISASADHTVRVWNFARRENMHTFKHADQ-VWCVCVAP-DGDKFVSVG  147 (181)
Q Consensus        82 ~~~--------~~~~~v~~~~~s~~---~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-v~~~~~sp-~g~~l~~~~  147 (181)
                      ...        .+...+..+.|-|.   . .+|+.-....++.+||..+|+.+..+..... ..|..+.| |.+.+..-+
T Consensus        96 ~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~  175 (1062)
T KOG1912|consen   96 FVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLG  175 (1062)
T ss_pred             ehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEc
Confidence            864        24566777877763   3 4666666678999999999999988875544 44588888 556666666


Q ss_pred             CCCcEEEEeC
Q psy10953        148 EDKAVHMYSY  157 (181)
Q Consensus       148 ~d~~v~i~~~  157 (181)
                      ..|.+.+-+.
T Consensus       176 s~g~vl~~~~  185 (1062)
T KOG1912|consen  176 SKGFVLSCKD  185 (1062)
T ss_pred             cCceEEEEec
Confidence            6777766554

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.25  E-value=0.00013  Score=57.23  Aligned_cols=138  Identities=14%  Similarity=0.194  Sum_probs=91.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEE----EEEcC
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLS----TAFTR   97 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~----~~~s~   97 (181)
                      .+..+++++.++.+..+|..+|+.+-.+...........  .++..++.++.++.++.+|..++...+-..    +.-+|
T Consensus        64 ~~~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~p  141 (377)
T TIGR03300        64 AGGKVYAADADGTVVALDAETGKRLWRVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKELWRAKLSSEVLSPP  141 (377)
T ss_pred             ECCEEEEECCCCeEEEEEccCCcEeeeecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEeeeeccCceeecCC
Confidence            466788888899999999999998765554443222222  246678888889999999998765322111    11112


Q ss_pred             --CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEE------EEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953         98 --DGKFFISASADHTVRVWNFARRENMHTFKHADQVW------CVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus        98 --~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~------~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                        .+..++.++.++.++.||.++++.+..+.......      +..+  .+..++.+..++.+..++..+|+.+
T Consensus       142 ~v~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~  213 (377)
T TIGR03300       142 LVANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPL  213 (377)
T ss_pred             EEECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence              24456667778999999999998877665332221      1111  1346777788889999998877654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.24  E-value=0.0001  Score=64.11  Aligned_cols=144  Identities=14%  Similarity=0.255  Sum_probs=96.3

Q ss_pred             EEEEEcCCCCEEEEEeC---CCcEEEEeCCCCcEEEEEec----CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-
Q psy10953         15 WNVVFSPDDKYVLSGSQ---SGKINLYGVETGKLEQIFDT----RGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-   86 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~---d~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-   86 (181)
                      ..++|.|.|+++|+...   ...|.+|+- +|-....|..    ....+..+.|++|+..|+..-.|. |.+|.....| 
T Consensus       260 ~~l~WrPsG~lIA~~q~~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHW  337 (928)
T PF04762_consen  260 GALSWRPSGNLIASSQRLPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHW  337 (928)
T ss_pred             CCccCCCCCCEEEEEEEcCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEE
Confidence            46899999999988764   456888864 3333333332    344577899999999999877665 9999876543 


Q ss_pred             ----------cccEEEEEEcCCC-CEEEEEeCCCcEEEEecCC--------------------Cc--------------e
Q psy10953         87 ----------SSWVLSTAFTRDG-KFFISASADHTVRVWNFAR--------------------RE--------------N  121 (181)
Q Consensus        87 ----------~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~--------------------~~--------------~  121 (181)
                                ...+..+.|+|.. ..|...+.++.+..+++.-                    |.              +
T Consensus       338 YLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~a~VPPP  417 (928)
T PF04762_consen  338 YLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRRAVVPPP  417 (928)
T ss_pred             EEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccccCCCch
Confidence                      2233448888853 4455555556555554310                    00              1


Q ss_pred             e--eeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        122 M--HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       122 ~--~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      +  ..+..+..|.+++|++++..+++...|+.+.+|.+...
T Consensus       418 Ms~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~  458 (928)
T PF04762_consen  418 MSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLK  458 (928)
T ss_pred             HhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCC
Confidence            1  12234567899999999998999999999999986543

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.22  E-value=5.9e-05  Score=60.30  Aligned_cols=135  Identities=18%  Similarity=0.247  Sum_probs=80.7

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe-CCCCC-----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD-ANTGH-----   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d-~~~~~-----   86 (181)
                      ....++++|+|+.++. +.||.-.++.....+....    +.. ..+.|.+.++ +|+-...+.|.++. .....     
T Consensus        34 ~p~~ls~npngr~v~V-~g~geY~iyt~~~~r~k~~----G~g-~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~k~i~  106 (443)
T PF04053_consen   34 YPQSLSHNPNGRFVLV-CGDGEYEIYTALAWRNKAF----GSG-LSFVWSSRNR-YAVLESSSTIKIYKNFKNEVVKSIK  106 (443)
T ss_dssp             --SEEEE-TTSSEEEE-EETTEEEEEETTTTEEEEE----EE--SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT----
T ss_pred             CCeeEEECCCCCEEEE-EcCCEEEEEEccCCccccc----Cce-eEEEEecCcc-EEEEECCCeEEEEEcCccccceEEc
Confidence            3567899999999988 5588888887544443221    222 3578888555 77777688899963 32111     


Q ss_pred             -cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         87 -SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        87 -~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                       ...+..+-  + |.+|...+.+ .|.+||..+++.+..+.... |..+.|+++|++++..+.+ .+.+++....
T Consensus       107 ~~~~~~~If--~-G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~-vk~V~Ws~~g~~val~t~~-~i~il~~~~~  175 (443)
T PF04053_consen  107 LPFSVEKIF--G-GNLLGVKSSD-FICFYDWETGKLIRRIDVSA-VKYVIWSDDGELVALVTKD-SIYILKYNLE  175 (443)
T ss_dssp             -SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS-E--EEEEE-TTSSEEEEE-S--SEEEEEE-HH
T ss_pred             CCcccceEE--c-CcEEEEECCC-CEEEEEhhHcceeeEEecCC-CcEEEEECCCCEEEEEeCC-eEEEEEecch
Confidence             11123332  2 8877766644 89999999999998888653 8899999999999988855 7777776543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2314|consensus

Probab=98.22  E-value=0.00014  Score=58.38  Aligned_cols=153  Identities=11%  Similarity=0.235  Sum_probs=95.5

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEE-EEEecCCceEEEEEECCCCCEEEEee
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGS----------QSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWIASGA   72 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~s~d~~~l~~~~   72 (181)
                      |+...+....-..+-|-.+|.+|..--          .-..+.|+.++...+- ..+.. ...+...+|.|.|..+++-+
T Consensus       386 iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpve~vel-ke~vi~FaWEP~gdkF~vi~  464 (698)
T KOG2314|consen  386 IRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPVEVVEL-KESVIAFAWEPHGDKFAVIS  464 (698)
T ss_pred             eeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCceeeec-chheeeeeeccCCCeEEEEE
Confidence            333333333334456777888886422          2224556665543322 22222 23355789999999887654


Q ss_pred             C---CCcEEEEeCC-CCC---------cccEEEEEEcCCCCEEEEEe---CCCcEEEEecCC--CceeeeeecCCcEEEE
Q psy10953         73 L---DGIINIFDAN-TGH---------SSWVLSTAFTRDGKFFISAS---ADHTVRVWNFAR--RENMHTFKHADQVWCV  134 (181)
Q Consensus        73 ~---d~~v~i~d~~-~~~---------~~~v~~~~~s~~~~~l~~~~---~d~~i~v~d~~~--~~~~~~~~~~~~v~~~  134 (181)
                      .   -.++++|.++ +.+         ....+.+.|+|.|++++.+.   ..|.+.++|+.-  -+.+....| ...+.+
T Consensus       465 g~~~k~tvsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh-~~at~v  543 (698)
T KOG2314|consen  465 GNTVKNTVSFYAVETNIKKPSLVKELDKKFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEH-FAATEV  543 (698)
T ss_pred             ccccccceeEEEeecCCCchhhhhhhcccccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccc-cccccc
Confidence            3   3578888876 222         12356789999999987765   468999999864  222222233 345678


Q ss_pred             EEccCCCEEEEEcC------CCcEEEEeCC
Q psy10953        135 CVAPDGDKFVSVGE------DKAVHMYSYK  158 (181)
Q Consensus       135 ~~sp~g~~l~~~~~------d~~v~i~~~~  158 (181)
                      .|.|.|+++++++.      |+.-++|++.
T Consensus       544 eWDPtGRYvvT~ss~wrhk~d~GYri~tfq  573 (698)
T KOG2314|consen  544 EWDPTGRYVVTSSSSWRHKVDNGYRIFTFQ  573 (698)
T ss_pred             eECCCCCEEEEeeehhhhccccceEEEEee
Confidence            89999999999884      4556777764

>KOG1645|consensus

Probab=98.21  E-value=1.9e-05  Score=60.80  Aligned_cols=84  Identities=18%  Similarity=0.229  Sum_probs=66.8

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEE
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIIN   78 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~   78 (181)
                      |++++-+..+...+.+++|||..+ ++..++-+.+|++.|+++......+..+ ..+++++|..|.. +++.|..+|.|.
T Consensus       183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vl  261 (463)
T KOG1645|consen  183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVL  261 (463)
T ss_pred             cchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEE
Confidence            345555555666789999999887 6788999999999999999888777665 4567889988765 566688999999


Q ss_pred             EEeCCCC
Q psy10953         79 IFDANTG   85 (181)
Q Consensus        79 i~d~~~~   85 (181)
                      +||.+..
T Consensus       262 vyD~R~~  268 (463)
T KOG1645|consen  262 VYDMRQP  268 (463)
T ss_pred             EEEccCC
Confidence            9999753

>KOG1334|consensus

Probab=98.17  E-value=4.3e-06  Score=65.56  Aligned_cols=150  Identities=19%  Similarity=0.299  Sum_probs=106.4

Q ss_pred             eeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEE------EEE------ecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953         12 VDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLE------QIF------DTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus        12 ~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~------~~~------~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      ...+.++..|-.. .+++++.|..+++||.+.-...      ..+      ......+.++.++.++.-|.+.=.|-.++
T Consensus       282 v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IY  361 (559)
T KOG1334|consen  282 VGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIY  361 (559)
T ss_pred             eeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceE
Confidence            4678899998665 7889999999999998643322      111      11233467899997765555555566788


Q ss_pred             EEeCC---------------------CCCcc--cEEEE-EEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEE
Q psy10953         79 IFDAN---------------------TGHSS--WVLST-AFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWC  133 (181)
Q Consensus        79 i~d~~---------------------~~~~~--~v~~~-~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~  133 (181)
                      ++...                     ++|.+  .|-.+ -|-|...++++|+.=|.|.||+=.+++.+..+. ....|+|
T Consensus       362 LF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNC  441 (559)
T KOG1334|consen  362 LFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNC  441 (559)
T ss_pred             EeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEec
Confidence            88532                     12321  23333 366888999999988999999988877666554 2237899


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      +.=+|---.||+.+.|..|+||.-.+.+
T Consensus       442 LEpHP~~PvLAsSGid~DVKIWTP~~~e  469 (559)
T KOG1334|consen  442 LEPHPHLPVLASSGIDHDVKIWTPLTAE  469 (559)
T ss_pred             cCCCCCCchhhccCCccceeeecCCccc
Confidence            9989988899999999999999975433

>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL

Probab=98.16  E-value=0.00025  Score=55.64  Aligned_cols=136  Identities=15%  Similarity=0.157  Sum_probs=85.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE-----EEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEEE---
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-----LSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTA---   94 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~~---   94 (181)
                      +..++.++.++.+..+|.++|+.+-.+.......     .+...  .+..++.+..++.+..+|+++++..+...+.   
T Consensus       145 ~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~  222 (377)
T TIGR03300       145 NGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQPLWEQRVALPK  222 (377)
T ss_pred             CCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeeccccCC
Confidence            4456666778888888888888765443322111     01111  1245677778889999998776543321110   


Q ss_pred             ------------EcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         95 ------------FTR--DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        95 ------------~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                                  -+|  .+..+..++.++.++.||..+++......... ....+  .++..++.++.++.++.++..++
T Consensus       223 g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~-~~~p~--~~~~~vyv~~~~G~l~~~d~~tG  299 (377)
T TIGR03300       223 GRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS-YQGPA--VDDNRLYVTDADGVVVALDRRSG  299 (377)
T ss_pred             CCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC-ccCce--EeCCEEEEECCCCeEEEEECCCC
Confidence                        011  24566777889999999999988776554322 11222  34677888888999999999887


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      +.+
T Consensus       300 ~~~  302 (377)
T TIGR03300       300 SEL  302 (377)
T ss_pred             cEE
Confidence            654

Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=98.14  E-value=0.002  Score=50.85  Aligned_cols=155  Identities=16%  Similarity=0.186  Sum_probs=110.2

Q ss_pred             eEEEEEEcCCCCEEEEEeC---CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCc-
Q psy10953         13 DMWNVVFSPDDKYVLSGSQ---SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGHS-   87 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~---d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~~-   87 (181)
                      ....++++|+++.+..+..   ++++.+.|..+++........... ..+.++|+|+.++.. ..++.+.+.|....+. 
T Consensus       117 ~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~  195 (381)
T COG3391         117 GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVV  195 (381)
T ss_pred             CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCccee
Confidence            3568999999988876655   689999999999988774432223 689999999966654 4788999999754321 


Q ss_pred             -----------ccEEEEEEcCCCCEEEEEe-CC--CcEEEEecCCCceeee-eecCC-cEEEEEEccCCCEEEEEc-CCC
Q psy10953         88 -----------SWVLSTAFTRDGKFFISAS-AD--HTVRVWNFARRENMHT-FKHAD-QVWCVCVAPDGDKFVSVG-EDK  150 (181)
Q Consensus        88 -----------~~v~~~~~s~~~~~l~~~~-~d--~~i~v~d~~~~~~~~~-~~~~~-~v~~~~~sp~g~~l~~~~-~d~  150 (181)
                                 .....+.++|+|+.+.... .+  +.+...|..++..... ..... ....+.++|+|+++.+.. ..+
T Consensus       196 ~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g~~~yv~~~~~~  275 (381)
T COG3391         196 RGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAGKAAYVANSQGG  275 (381)
T ss_pred             ccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccCCCCceeECCCCCEEEEEecCCC
Confidence                       1235678999998544444 33  5899999888776654 22222 466789999999988774 457


Q ss_pred             cEEEEeCCCCeeEEEcCC
Q psy10953        151 AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~~  168 (181)
                      .+.+.+..+.........
T Consensus       276 ~V~vid~~~~~v~~~~~~  293 (381)
T COG3391         276 TVSVIDGATDRVVKTGPT  293 (381)
T ss_pred             eEEEEeCCCCceeeeecc
Confidence            899988877665544333

>KOG2066|consensus

Probab=98.12  E-value=0.00015  Score=60.27  Aligned_cols=130  Identities=20%  Similarity=0.240  Sum_probs=91.8

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-----CCEEEEeeCCCcEEEEeCC----------CCC
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-----GHWIASGALDGIINIFDAN----------TGH   86 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-----~~~l~~~~~d~~v~i~d~~----------~~~   86 (181)
                      +|.++++|+.||++.+..+-+.+....+.. +.++.+++++||     .+++++|+.-| +.++.-+          ..-
T Consensus        82 ~Gey~asCS~DGkv~I~sl~~~~~~~~~df-~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~  159 (846)
T KOG2066|consen   82 EGEYVASCSDDGKVVIGSLFTDDEITQYDF-KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEG  159 (846)
T ss_pred             CCceEEEecCCCcEEEeeccCCccceeEec-CCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecC
Confidence            699999999999999999988887776654 445678999998     46789998888 7666532          112


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-------cEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         87 SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD-------QVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        87 ~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-------~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      .+.|.++.|  .|+++|-++.+| |++||...++.+..++.+.       -...+.|.++.+.++ | -..+|.+..++
T Consensus       160 eG~I~~i~W--~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~~LVI-G-W~d~v~i~~I~  233 (846)
T KOG2066|consen  160 EGPIHSIKW--RGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDEDRLVI-G-WGDSVKICSIK  233 (846)
T ss_pred             ccceEEEEe--cCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCCeEEE-e-cCCeEEEEEEe
Confidence            456777766  577888888765 9999998877666554221       123567766654333 3 33366666665

>KOG2066|consensus

Probab=98.11  E-value=0.00024  Score=59.09  Aligned_cols=137  Identities=18%  Similarity=0.225  Sum_probs=95.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------cccEEEEE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------SSWVLSTA   94 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------~~~v~~~~   94 (181)
                      .++.++-|..+|.+++++.+..- ...+.+...       ..+|.++++++.||+|.+-.+-+..       ...+.+++
T Consensus        48 ~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~~-------~~~Gey~asCS~DGkv~I~sl~~~~~~~~~df~rpiksia  119 (846)
T KOG2066|consen   48 HDKFFALGTHRGAVYLTTCQGNP-KTNFDHSSS-------ILEGEYVASCSDDGKVVIGSLFTDDEITQYDFKRPIKSIA  119 (846)
T ss_pred             hcceeeeccccceEEEEecCCcc-ccccccccc-------ccCCceEEEecCCCcEEEeeccCCccceeEecCCcceeEE
Confidence            46789999999999999876443 333322111       6679999999999998888765432       34678899


Q ss_pred             EcCC-----CCEEEEEeCCCcEEEEecC---CCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953         95 FTRD-----GKFFISASADHTVRVWNFA---RRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus        95 ~s~~-----~~~l~~~~~d~~i~v~d~~---~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      ++|+     .+.+++|+.-| +.++.-.   ....+....-.++|.++.|  .|++++=++ |-.|++|+...++.+.-.
T Consensus       120 l~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W--~g~lIAWan-d~Gv~vyd~~~~~~l~~i  195 (846)
T KOG2066|consen  120 LHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKW--RGNLIAWAN-DDGVKVYDTPTRQRLTNI  195 (846)
T ss_pred             eccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEe--cCcEEEEec-CCCcEEEeccccceeecc
Confidence            9998     46788888877 7776422   1222222235678999988  466776555 667999999988887655


Q ss_pred             CCCC
Q psy10953        167 GGGG  170 (181)
Q Consensus       167 ~~~~  170 (181)
                      .+..
T Consensus       196 ~~p~  199 (846)
T KOG2066|consen  196 PPPS  199 (846)
T ss_pred             CCCC
Confidence            5543

>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A

Probab=98.10  E-value=0.00034  Score=50.99  Aligned_cols=138  Identities=22%  Similarity=0.300  Sum_probs=87.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEE-ecCC---ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCccc--------
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIF-DTRG---KFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSW--------   89 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~---~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~--------   89 (181)
                      ++..++.++.++.+..+|..+|+.+-.. ....   ..........++..++.+..++.+..+|++++...+        
T Consensus        75 ~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~  154 (238)
T PF13360_consen   75 DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPR  154 (238)
T ss_dssp             ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-
T ss_pred             cccccccccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCC
Confidence            4555666667889999999999987663 3221   111122233347778888889999999987653211        


Q ss_pred             ----------EEEEEEcCCCCEEEEEeCCCc-EEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         90 ----------VLSTAFTRDGKFFISASADHT-VRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        90 ----------v~~~~~s~~~~~l~~~~~d~~-i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                                +..-....++ .+..++.++. +.+ |+.+++.+.... ...+.. ...+++..+++++.++.+..||..
T Consensus       155 ~~~~~~~~~~~~~~~~~~~~-~v~~~~~~g~~~~~-d~~tg~~~w~~~-~~~~~~-~~~~~~~~l~~~~~~~~l~~~d~~  230 (238)
T PF13360_consen  155 GSSPISSFSDINGSPVISDG-RVYVSSGDGRVVAV-DLATGEKLWSKP-ISGIYS-LPSVDGGTLYVTSSDGRLYALDLK  230 (238)
T ss_dssp             SS--EEEETTEEEEEECCTT-EEEEECCTSSEEEE-ETTTTEEEEEEC-SS-ECE-CEECCCTEEEEEETTTEEEEEETT
T ss_pred             CCcceeeecccccceEEECC-EEEEEcCCCeEEEE-ECCCCCEEEEec-CCCccC-CceeeCCEEEEEeCCCEEEEEECC
Confidence                      1111122244 5555665665 555 999998665433 333333 235677888888899999999999


Q ss_pred             CCeeE
Q psy10953        159 PEEEV  163 (181)
Q Consensus       159 ~~~~~  163 (181)
                      +++.+
T Consensus       231 tG~~~  235 (238)
T PF13360_consen  231 TGKVV  235 (238)
T ss_dssp             TTEEE
T ss_pred             CCCEE
Confidence            98764

...

>KOG4714|consensus

Probab=98.08  E-value=3.6e-05  Score=56.21  Aligned_cols=63  Identities=17%  Similarity=0.414  Sum_probs=51.5

Q ss_pred             EEEEEECCCCCE-EEEeeCCCcEEEEeCCC---------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCC
Q psy10953         56 TLSIAYSTDGHW-IASGALDGIINIFDANT---------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFAR  118 (181)
Q Consensus        56 ~~~~~~s~d~~~-l~~~~~d~~v~i~d~~~---------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~  118 (181)
                      +.+++-+|..+. +++|+.||.+.+||.+.         .|+..+..+.|+| ++..|++++.||.+-.||..+
T Consensus       182 v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~  255 (319)
T KOG4714|consen  182 VTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST  255 (319)
T ss_pred             chhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence            567788887654 56689999999999874         3667788899999 467999999999999999753

>KOG2041|consensus

Probab=98.05  E-value=5.8e-05  Score=62.26  Aligned_cols=101  Identities=21%  Similarity=0.346  Sum_probs=82.4

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCC-----------------------CCcccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANT-----------------------GHSSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                      ..+++|.....+++.|+.||.+++..+.+                       ||+..|.-+.|+.+.+.|-++..+|-|-
T Consensus        17 L~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIi   96 (1189)
T KOG2041|consen   17 LHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLII   96 (1189)
T ss_pred             EEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCceEE
Confidence            35889999999999999999999987642                       5778899999999999999999999999


Q ss_pred             EEecCCCceee---eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953        113 VWNFARRENMH---TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus       113 v~d~~~~~~~~---~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      +|-+..+.=..   .-.....|.+++|..||..++..-.||.|-+=.
T Consensus        97 VWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGs  143 (1189)
T KOG2041|consen   97 VWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGS  143 (1189)
T ss_pred             EEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEe
Confidence            99987664222   223445688999999999999888888875443

>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation []

Probab=98.03  E-value=0.00043  Score=60.30  Aligned_cols=141  Identities=18%  Similarity=0.304  Sum_probs=91.1

Q ss_pred             EEEEEcCCCCEEEEEeC---C---CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCCC-
Q psy10953         15 WNVVFSPDDKYVLSGSQ---S---GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDANT-   84 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~---d---~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~~-   84 (181)
                      ..|+|-.||+++|+.+-   +   ..+|+|+-+ |.+...-..-..--..++|.|.|+++++...   ...|.+|..+. 
T Consensus       213 ~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGL  291 (928)
T PF04762_consen  213 VRISWRGDGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGL  291 (928)
T ss_pred             eEEEECCCCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCc
Confidence            57899999999997764   2   468999855 5543322211111126899999999988654   34566665431 


Q ss_pred             ----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee--e--eeecCCcEEEEEEccC-CCEEEEEcCC
Q psy10953         85 ----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM--H--TFKHADQVWCVCVAPD-GDKFVSVGED  149 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~--~--~~~~~~~v~~~~~sp~-g~~l~~~~~d  149 (181)
                                .....|..+.|++++..|+....| .|.+|-..+..=.  .  .+.....+..+.|+|. ...|.....+
T Consensus       292 rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~-~vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~  370 (928)
T PF04762_consen  292 RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLED-RVQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSN  370 (928)
T ss_pred             EeeeEecCCCCCCceeeEEEECCCCCEEEEEecC-CceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecC
Confidence                      234568999999999999887755 4999977654311  1  1222334555889985 4456666666


Q ss_pred             CcEEEEeC
Q psy10953        150 KAVHMYSY  157 (181)
Q Consensus       150 ~~v~i~~~  157 (181)
                      +.+..+++
T Consensus       371 g~~~~~~~  378 (928)
T PF04762_consen  371 GQYEIYDF  378 (928)
T ss_pred             CcEEEEEE
Confidence            77665554

>KOG1064|consensus

Probab=97.99  E-value=3.7e-05  Score=68.81  Aligned_cols=106  Identities=18%  Similarity=0.324  Sum_probs=78.8

Q ss_pred             eEEEEEECCCCCEEEEeeCCCcEEEEeCC---------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------
Q psy10953         55 FTLSIAYSTDGHWIASGALDGIINIFDAN---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR-------  118 (181)
Q Consensus        55 ~~~~~~~s~d~~~l~~~~~d~~v~i~d~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-------  118 (181)
                      .+.++.-+|...+.++|+.||.|++|.-.         +.-...|..+.|+.+|+.+..+..||.+.+|....       
T Consensus      2210 ~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~pk~~~s~q 2289 (2439)
T KOG1064|consen 2210 NVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQASPKPYTSWQ 2289 (2439)
T ss_pred             ceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccCCcceeccc
Confidence            34567778888889999999999999642         22235667778888888877777788888885310       


Q ss_pred             --------------------------------------CceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        119 --------------------------------------RENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       119 --------------------------------------~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                                                            ...++ .-|.+.++++++-|..+.|++||.+|.|++||++..
T Consensus      2290 chnk~~~Df~Fi~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqr 2368 (2439)
T KOG1064|consen 2290 CHNKALSDFRFIGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQR 2368 (2439)
T ss_pred             cCCccccceeeeehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCcCcEEEeehHHH
Confidence                                                  00111 125667899999999999999999999999999765


Q ss_pred             e
Q psy10953        161 E  161 (181)
Q Consensus       161 ~  161 (181)
                      +
T Consensus      2369 q 2369 (2439)
T KOG1064|consen 2369 Q 2369 (2439)
T ss_pred             H
Confidence            4

>COG3391 Uncharacterized conserved protein [Function unknown]

Probab=97.94  E-value=0.0041  Score=49.07  Aligned_cols=151  Identities=16%  Similarity=0.197  Sum_probs=105.5

Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCCc--
Q psy10953         14 MWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDANTGHS--   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~~~~~--   87 (181)
                      ...+++++.+..+. +...+..|.+.|..+.+.......-. ....+.++++++.+..+..   ++.+.+.|..+...  
T Consensus        76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~-~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~  154 (381)
T COG3391          76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL-GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTA  154 (381)
T ss_pred             ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeecc-CCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEE
Confidence            45778888888654 44456899999988887776554332 3457999999988776654   67888888764321  


Q ss_pred             -----ccEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCceee-e----eecCCcEEEEEEccCCCEEEEEcCC---CcEE
Q psy10953         88 -----SWVLSTAFTRDGKFFI-SASADHTVRVWNFARRENMH-T----FKHADQVWCVCVAPDGDKFVSVGED---KAVH  153 (181)
Q Consensus        88 -----~~v~~~~~s~~~~~l~-~~~~d~~i~v~d~~~~~~~~-~----~~~~~~v~~~~~sp~g~~l~~~~~d---~~v~  153 (181)
                           .....++++|+|+.+. +-..++.+.+.|........ .    .........++++|+|+++++....   +.+.
T Consensus       155 ~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~  234 (381)
T COG3391         155 TIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVL  234 (381)
T ss_pred             EEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEE
Confidence                 1226789999999554 44478899999977655442 1    2233456789999999977665544   5888


Q ss_pred             EEeCCCCeeEEE
Q psy10953        154 MYSYKPEEEVEV  165 (181)
Q Consensus       154 i~~~~~~~~~~~  165 (181)
                      ..+..++.....
T Consensus       235 ~id~~~~~v~~~  246 (381)
T COG3391         235 KIDTATGNVTAT  246 (381)
T ss_pred             EEeCCCceEEEe
Confidence            888877665553

>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]

Probab=97.92  E-value=0.0027  Score=50.59  Aligned_cols=147  Identities=9%  Similarity=0.145  Sum_probs=97.1

Q ss_pred             eeeEEEEEEcCCCCE--EE-----EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-----C-----
Q psy10953         11 PVDMWNVVFSPDDKY--VL-----SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-----L-----   73 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~--l~-----~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-----~-----   73 (181)
                      +..+...+|||.|+.  |+     ..+..+.+++|.+..++.+.........-..+.|.+.|++|+.--     .     
T Consensus       173 ~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyf  252 (561)
T COG5354         173 PVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYF  252 (561)
T ss_pred             ccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeeccccee
Confidence            355778889987543  44     356778999999987766543332222234789999998776421     1     


Q ss_pred             -CCcEEEEeCCC-------CCcccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE
Q psy10953         74 -DGIINIFDANT-------GHSSWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        74 -d~~v~i~d~~~-------~~~~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l  143 (181)
                       ...++++++..       .-.+.|...+|.|.++.+++.+  ....+.++|++..  +..+-.+..=+.+.|||.++++
T Consensus       253 gesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~i  330 (561)
T COG5354         253 GESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYI  330 (561)
T ss_pred             ccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEE
Confidence             24567777642       2356789999999988666555  5778899998775  3333334445667788888887


Q ss_pred             EEEcCC---CcEEEEeCCC
Q psy10953        144 VSVGED---KAVHMYSYKP  159 (181)
Q Consensus       144 ~~~~~d---~~v~i~~~~~  159 (181)
                      +.++-|   |.+-+|+...
T Consensus       331 l~agF~nl~gni~i~~~~~  349 (561)
T COG5354         331 LFAGFDNLQGNIEIFDPAG  349 (561)
T ss_pred             EEecCCccccceEEeccCC
Confidence            776654   4677777643

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.91  E-value=0.0007  Score=56.20  Aligned_cols=140  Identities=9%  Similarity=0.009  Sum_probs=83.3

Q ss_pred             eEEEEEEcCCCCEEEEEe------CCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-----------
Q psy10953         13 DMWNVVFSPDDKYVLSGS------QSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-----------   73 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~------~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-----------   73 (181)
                      .+.+.++||||+.++...      .|.  .|.+++. .+....+...  .......|+|||+++.+...           
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~-gg~~~~lt~g--~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~  427 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPL-GGVAVQVLEG--HSLTRPSWSLDADAVWVVVDGNTVVRVIRDP  427 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeC-CCcceeeecC--CCCCCceECCCCCceEEEecCcceEEEeccC
Confidence            467889999999987655      244  4555554 3333333332  22456899999887766532           


Q ss_pred             -CCcEEEEeCCCCC-----cccEEEEEEcCCCCEEEEEeCCCcEEE---EecCCCce-e---eeee--cCCcEEEEEEcc
Q psy10953         74 -DGIINIFDANTGH-----SSWVLSTAFTRDGKFFISASADHTVRV---WNFARREN-M---HTFK--HADQVWCVCVAP  138 (181)
Q Consensus        74 -d~~v~i~d~~~~~-----~~~v~~~~~s~~~~~l~~~~~d~~i~v---~d~~~~~~-~---~~~~--~~~~v~~~~~sp  138 (181)
                       .+.+++.++..+.     ...|..+.|||||+.++... ++.|++   -....+.. +   ..+.  ....+..+.|.+
T Consensus       428 ~~gql~~~~vd~ge~~~~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W~~  506 (591)
T PRK13616        428 ATGQLARTPVDASAVASRVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDWRT  506 (591)
T ss_pred             CCceEEEEeccCchhhhccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceEec
Confidence             2344444554332     34689999999999887766 467776   33333331 1   1111  223357889999


Q ss_pred             CCCEEEEEcCCCcEEEEeC
Q psy10953        139 DGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~~  157 (181)
                      ++..+ .+..+....+|.+
T Consensus       507 ~~~L~-V~~~~~~~~v~~v  524 (591)
T PRK13616        507 GDSLV-VGRSDPEHPVWYV  524 (591)
T ss_pred             CCEEE-EEecCCCCceEEE
Confidence            98855 4444444445554

>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function

Probab=97.89  E-value=0.0057  Score=46.39  Aligned_cols=133  Identities=19%  Similarity=0.280  Sum_probs=87.9

Q ss_pred             EEEEEcCCCCEEEEEeC------------------CCcEEEEeCCCCcEEEEEec----CCceEEEEEECCCCCEEEEee
Q psy10953         15 WNVVFSPDDKYVLSGSQ------------------SGKINLYGVETGKLEQIFDT----RGKFTLSIAYSTDGHWIASGA   72 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~------------------d~~i~~~d~~~~~~~~~~~~----~~~~~~~~~~s~d~~~l~~~~   72 (181)
                      ..+.+.|||+.|+.+..                  +..+...|..+|+++.....    +.-.+.-++++++|..++..-
T Consensus       102 Hel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q  181 (305)
T PF07433_consen  102 HELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ  181 (305)
T ss_pred             hhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe
Confidence            35678999988876642                  23577788889988765433    333455688888888666544


Q ss_pred             CCC-------cEEEEeCCC-------------CCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCcE
Q psy10953         73 LDG-------IINIFDANT-------------GHSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARRENMHTFKHADQV  131 (181)
Q Consensus        73 ~d~-------~v~i~d~~~-------------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v  131 (181)
                      ..+       .+.+++...             .-..++-++++++++.+++..+ ..+.+.+||..++..+......+ +
T Consensus       182 ~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l~D-~  260 (305)
T PF07433_consen  182 YQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPLPD-A  260 (305)
T ss_pred             cCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccccCc-e
Confidence            332       223332211             1346899999999999876666 46778999999998777666543 5


Q ss_pred             EEEEEccCCCEEEEEcCC
Q psy10953        132 WCVCVAPDGDKFVSVGED  149 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d  149 (181)
                      ..++-.+++ ++++.+..
T Consensus       261 cGva~~~~~-f~~ssG~G  277 (305)
T PF07433_consen  261 CGVAPTDDG-FLVSSGQG  277 (305)
T ss_pred             eeeeecCCc-eEEeCCCc
Confidence            566666666 55555543

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=97.87  E-value=0.0012  Score=56.05  Aligned_cols=125  Identities=14%  Similarity=0.188  Sum_probs=84.3

Q ss_pred             eCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCC-------CCEEEEeeCCCcEEEEeCCCCCc-------------cc
Q psy10953         30 SQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD-------GHWIASGALDGIINIFDANTGHS-------------SW   89 (181)
Q Consensus        30 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d-------~~~l~~~~~d~~v~i~d~~~~~~-------------~~   89 (181)
                      .....++-.|++.|+++..+..+.... -..+.|+       ....+.|-.++.+..||.+....             ..
T Consensus       501 ~~~~~ly~mDLe~GKVV~eW~~~~~~~-v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~  579 (794)
T PF08553_consen  501 NNPNKLYKMDLERGKVVEEWKVHDDIP-VVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNN  579 (794)
T ss_pred             CCCCceEEEecCCCcEEEEeecCCCcc-eeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccccccccCCC
Confidence            345788899999999998888765431 2344443       23356677888999999874321             11


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         90 VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      -.+++-+.+|. +|.|+.+|.|++||--....-..++ ...+|.++..+.||+++++.+ +..+.+++.
T Consensus       580 Fs~~aTt~~G~-iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  580 FSCFATTEDGY-IAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             ceEEEecCCce-EEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            23455555554 6889999999999943222111222 467899999999999998777 456666664

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>KOG3621|consensus

Probab=97.85  E-value=0.00014  Score=59.59  Aligned_cols=104  Identities=13%  Similarity=0.180  Sum_probs=81.5

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCC---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee--
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT--  124 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~--  124 (181)
                      +.--+++..+++++.|+.-|.+++|+...+         ..+.+.....+++..++|.+++.+.|.++-+....+...  
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            334467778899999999999999987543         234456677899999999999999999997755322211  


Q ss_pred             ---e--ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        125 ---F--KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       125 ---~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                         .  .|...|++++|++++..+++|...|.|.+-.+..
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence               1  2567899999999999999999999998877765

>KOG1645|consensus

Probab=97.85  E-value=5.5e-05  Score=58.27  Aligned_cols=75  Identities=16%  Similarity=0.320  Sum_probs=64.2

Q ss_pred             CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEEcCCCcEEEEeCCC
Q psy10953         85 GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        85 ~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~d~~v~i~~~~~  159 (181)
                      ++...|.+++|||..+ ++..++.+..|++.|+.+......+.....+|+++|..|.+ +|++|-.+|.|.+||++.
T Consensus       191 ~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~  267 (463)
T KOG1645|consen  191 GEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ  267 (463)
T ss_pred             ccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence            4566789999999988 78888999999999999988888887668999999998865 467777899999999864

>KOG1008|consensus

Probab=97.85  E-value=4.7e-06  Score=67.46  Aligned_cols=146  Identities=18%  Similarity=0.219  Sum_probs=100.0

Q ss_pred             eeeEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCcEE-EE-EecCCceEEEEEECC-CCCEEEEee----CCCcEEEEe
Q psy10953         11 PVDMWNVVFSPDD--KYVLSGSQSGKINLYGVETGKLE-QI-FDTRGKFTLSIAYST-DGHWIASGA----LDGIINIFD   81 (181)
Q Consensus        11 ~~~~~~~~~s~~g--~~l~~~~~d~~i~~~d~~~~~~~-~~-~~~~~~~~~~~~~s~-d~~~l~~~~----~d~~v~i~d   81 (181)
                      -.++.++++..+.  .+++.|..+|.|.+-..+..... .. ...+.....+++|++ |.++||+|-    .|..+.+||
T Consensus        56 tqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwd  135 (783)
T KOG1008|consen   56 TQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWD  135 (783)
T ss_pred             CCCceeehhhcCCchhhhhhccccCceEEeecCCcccccceecccccccccccccccccHHHHHhhhhhhcccCCcccee
Confidence            3446677766544  46789999999999877643322 11 122233445678876 567777773    467899999


Q ss_pred             CCCCC-------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEcc-CCCEEEEEc
Q psy10953         82 ANTGH-------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAP-DGDKFVSVG  147 (181)
Q Consensus        82 ~~~~~-------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~  147 (181)
                      +.+..             ......+.|..+.+++.+|.....++++|++........-.+..+.++.++| .++++++..
T Consensus       136 i~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~  215 (783)
T KOG1008|consen  136 INSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS  215 (783)
T ss_pred             cccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc
Confidence            87541             1223466777888899999999999999998654443333445677788888 777777666


Q ss_pred             CCCcEEEEeC
Q psy10953        148 EDKAVHMYSY  157 (181)
Q Consensus       148 ~d~~v~i~~~  157 (181)
                       |+.|.+||.
T Consensus       216 -dg~iAiwD~  224 (783)
T KOG1008|consen  216 -DGDIAIWDT  224 (783)
T ss_pred             -cCceeeccc
Confidence             899999993

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.80  E-value=0.007  Score=44.83  Aligned_cols=152  Identities=13%  Similarity=0.160  Sum_probs=87.7

Q ss_pred             cCeeeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          9 VGPVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      .-...++.++|.|+.+.| ++....+.|..++. +|+++..+...+ .....+++..++.++++--.++.+.++++..  
T Consensus        19 g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~   97 (248)
T PF06977_consen   19 GILDELSGLTYNPDTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTIDDDT   97 (248)
T ss_dssp             T--S-EEEEEEETTTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE----
T ss_pred             CccCCccccEEcCCCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEEeccc
Confidence            334458999999986654 56666778877786 478877766543 2356788887777666555678888777621  


Q ss_pred             -----------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC---Cceeeee-----e----cCCcEEEEE
Q psy10953         85 -----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR---RENMHTF-----K----HADQVWCVC  135 (181)
Q Consensus        85 -----------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~-----~----~~~~v~~~~  135 (181)
                                       .++...-.++|+|.++.|+.+-......+|.+..   ...+...     .    ....+.+++
T Consensus        98 ~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~  177 (248)
T PF06977_consen   98 TSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLS  177 (248)
T ss_dssp             TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS---EEE
T ss_pred             cccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccccceE
Confidence                             1223467799999877666666666666776543   1111111     1    223578899


Q ss_pred             EccCCCE-EEEEcCCCcEEEEeCCCCee
Q psy10953        136 VAPDGDK-FVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       136 ~sp~g~~-l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ++|.... ++.....+.+..++. .|+.
T Consensus       178 ~~p~t~~lliLS~es~~l~~~d~-~G~~  204 (248)
T PF06977_consen  178 YDPRTGHLLILSDESRLLLELDR-QGRV  204 (248)
T ss_dssp             EETTTTEEEEEETTTTEEEEE-T-T--E
T ss_pred             EcCCCCeEEEEECCCCeEEEECC-CCCE
Confidence            9997554 555556778888884 4544

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>KOG0309|consensus

Probab=97.80  E-value=0.00013  Score=60.39  Aligned_cols=151  Identities=15%  Similarity=0.324  Sum_probs=103.5

Q ss_pred             ccCeeeEEEEEEcCCC---CEEEEEeCCCcEEEEeCC---CCcEEEEEecCCceEEEEEECCCC-CEEEEeeCCCcEEEE
Q psy10953          8 NVGPVDMWNVVFSPDD---KYVLSGSQSGKINLYGVE---TGKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDGIINIF   80 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g---~~l~~~~~d~~i~~~d~~---~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~   80 (181)
                      +..|-.+-+..|+|..   .++++.+.. .-.+|++.   +..+...+-.|+..+..+.|.|+. ..+++.+-|..++.|
T Consensus        64 h~tpw~vad~qws~h~a~~~wiVsts~q-kaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~w  142 (1081)
T KOG0309|consen   64 HITPWQVADVQWSPHPAKPYWIVSTSNQ-KAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAW  142 (1081)
T ss_pred             ccCcchhcceecccCCCCceeEEecCcc-hhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceee
Confidence            3445556677777643   345555544 44567764   233344555677778889999876 467888999999999


Q ss_pred             eCCCCCcc---------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeeeee-cCCcEEEEEEccC-CCEEEEEcC
Q psy10953         81 DANTGHSS---------WVLSTAFTRDGKFFISASADHTVRVWNFARRE-NMHTFK-HADQVWCVCVAPD-GDKFVSVGE  148 (181)
Q Consensus        81 d~~~~~~~---------~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~~~~~-~~~~v~~~~~sp~-g~~l~~~~~  148 (181)
                      |.+..|..         .-..++|+...-.+++.+....|.+||++-+. +++..+ |...+++++|..- ...+.+++.
T Consensus       143 d~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~  222 (1081)
T KOG0309|consen  143 DMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSN  222 (1081)
T ss_pred             eccCCCcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCC
Confidence            99876642         23456787755445566778899999998764 555554 6667888877643 345788889


Q ss_pred             CCcEEEEeCCC
Q psy10953        149 DKAVHMYSYKP  159 (181)
Q Consensus       149 d~~v~i~~~~~  159 (181)
                      |++|+.|++..
T Consensus       223 d~tvkfw~y~k  233 (1081)
T KOG0309|consen  223 DGTVKFWDYSK  233 (1081)
T ss_pred             CCceeeecccc
Confidence            99999999853

>KOG1920|consensus

Probab=97.78  E-value=0.0029  Score=55.23  Aligned_cols=149  Identities=15%  Similarity=0.223  Sum_probs=93.2

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC----C-------------------CcEEEEEecCC--------------
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVE----T-------------------GKLEQIFDTRG--------------   53 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~----~-------------------~~~~~~~~~~~--------------   53 (181)
                      ...+.+++||||++.++.....+++.+-+..    .                   |+....|....              
T Consensus       109 d~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~  188 (1265)
T KOG1920|consen  109 DNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKA  188 (1265)
T ss_pred             cCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccccccccccccccceecccccceeeecchhhhccccccccccc
Confidence            3457889999999999888877777655321    0                   11111121100              


Q ss_pred             -------ceEEEEEECCCCCEEEEe-----eCCCcEEEEeCCCC--C-----cccEEEEEEcCCCCEEEEEeC---CCcE
Q psy10953         54 -------KFTLSIAYSTDGHWIASG-----ALDGIINIFDANTG--H-----SSWVLSTAFTRDGKFFISASA---DHTV  111 (181)
Q Consensus        54 -------~~~~~~~~s~d~~~l~~~-----~~d~~v~i~d~~~~--~-----~~~v~~~~~s~~~~~l~~~~~---d~~i  111 (181)
                             ..-.+++|--||+++++.     .....+++||.+..  +     .+.-.+++|-|.|.++++-..   +..|
T Consensus       189 ~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~I  268 (1265)
T KOG1920|consen  189 LEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDI  268 (1265)
T ss_pred             ccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccccccceeecCCCCeEeeeeecCCCCcE
Confidence                   001248899999998873     23379999998721  1     112246899999998887543   4568


Q ss_pred             EEEecCC---Cceeeeee-cCCcEEEEEEccCCCEEEE---EcCCCcEEEEeCCC
Q psy10953        112 RVWNFAR---RENMHTFK-HADQVWCVCVAPDGDKFVS---VGEDKAVHMYSYKP  159 (181)
Q Consensus       112 ~v~d~~~---~~~~~~~~-~~~~v~~~~~sp~g~~l~~---~~~d~~v~i~~~~~  159 (181)
                      .+|.-..   +.-...++ ...++..++|+.++..|+.   ......|++|....
T Consensus       269 vffErNGL~hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~N  323 (1265)
T KOG1920|consen  269 VFFERNGLRHGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGN  323 (1265)
T ss_pred             EEEecCCccccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecC
Confidence            8885322   22111222 2234889999999999887   44555699998643

>KOG4640|consensus

Probab=97.78  E-value=0.00016  Score=58.66  Aligned_cols=77  Identities=18%  Similarity=0.355  Sum_probs=64.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEE-EEEECCCCCEEEEeeCCCcEEEEeCCCCCc
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTL-SIAYSTDGHWIASGALDGIINIFDANTGHS   87 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~-~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~   87 (181)
                      -+..+.-+.|+|.-.++|++..+|++.+..+. .+.+..+..++..+. +++|.|||+.|+.|-.||++++.|+.+++.
T Consensus        19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~   96 (665)
T KOG4640|consen   19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGR   96 (665)
T ss_pred             cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCc
Confidence            45556778999999999999999999999888 555566665555554 899999999999999999999999988763

>KOG1275|consensus

Probab=97.78  E-value=0.00031  Score=59.42  Aligned_cols=131  Identities=13%  Similarity=0.185  Sum_probs=87.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--------CcccEEEE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLST   93 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--------~~~~v~~~   93 (181)
                      ++..++-|+.-..+..+|+++.+..+.......-+.-++  .+++.+.+|...|+|.+-|+++.        |.+.+.  
T Consensus       146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~siS--  221 (1118)
T KOG1275|consen  146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASGVTIMR--YNNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSGSIS--  221 (1118)
T ss_pred             CCcceeecchhhheeeeecccceeeeeeeccCCceEEEE--ecCcEEEeecccceEEeecCCcCceeeeeecccccee--
Confidence            445666676677888899999988777665443333344  36788999999999999999753        555553  


Q ss_pred             EEcCCCCEEEEEeC---------CCcEEEEecCCCceeeeeecCCcEEEEEEccC-CCEEEEEcCCCcEEEEe
Q psy10953         94 AFTRDGKFFISASA---------DHTVRVWNFARRENMHTFKHADQVWCVCVAPD-GDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        94 ~~s~~~~~l~~~~~---------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~  156 (181)
                      .|+-.|++|++|+.         |..|+|||++.-+.+.-+..+....-+.|+|. ...+++++..|..++-+
T Consensus       222 DfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd  294 (1118)
T KOG1275|consen  222 DFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVD  294 (1118)
T ss_pred             eeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeecc
Confidence            46778999999886         45789999987655444332222334555554 23455555556655544

>KOG3621|consensus

Probab=97.73  E-value=0.00041  Score=57.06  Aligned_cols=105  Identities=19%  Similarity=0.337  Sum_probs=80.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------   84 (181)
                      +.-=+++..+++++.|+.-|.+.+|+-.+++....-. .....+...+.|++..++|.|+..|.|.++-+..        
T Consensus        36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~~~  115 (726)
T KOG3621|consen   36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDLDY  115 (726)
T ss_pred             EEEEEeecCCceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCccee
Confidence            3334467789999999999999999877666543222 1233344568899889889999999999997642        


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR  118 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~  118 (181)
                            .|...|+++.|+++++.+.+|...|+|..-.+..
T Consensus       116 ~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s  155 (726)
T KOG3621|consen  116 VTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS  155 (726)
T ss_pred             eccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence                  2567899999999999999999999988776544

>KOG1008|consensus

Probab=97.71  E-value=9.3e-06  Score=65.82  Aligned_cols=145  Identities=13%  Similarity=0.319  Sum_probs=95.2

Q ss_pred             eEEEEEEcC-CCCEEEEEeC----CCcEEEEeCCCCc----EEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         13 DMWNVVFSP-DDKYVLSGSQ----SGKINLYGVETGK----LEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~~----d~~i~~~d~~~~~----~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+.+++|.+ |-++||+|-+    |..+.+||+.++-    ....|.. ......+++|-.+.+++.+|+....+.++|+
T Consensus       104 ~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdl  183 (783)
T KOG1008|consen  104 PCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDL  183 (783)
T ss_pred             cccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhh
Confidence            467788887 5566766642    4579999998761    1223332 1122236788889999999999999999998


Q ss_pred             CCC-------CcccEEEEEEcC-CCCEEEEEeCCCcEEEEec-CCCc-eeeeee-----cCCcEEEEEEccCCC-EEEEE
Q psy10953         83 NTG-------HSSWVLSTAFTR-DGKFFISASADHTVRVWNF-ARRE-NMHTFK-----HADQVWCVCVAPDGD-KFVSV  146 (181)
Q Consensus        83 ~~~-------~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~-~~~~-~~~~~~-----~~~~v~~~~~sp~g~-~l~~~  146 (181)
                      +..       .+..+..+..+| .+.++++ ..|+.|.+||. +.-+ ++..+.     .++.+..+++.|... .+++.
T Consensus       184 Rqs~~~~~svnTk~vqG~tVdp~~~nY~cs-~~dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l  262 (783)
T KOG1008|consen  184 RQSLDSVSSVNTKYVQGITVDPFSPNYFCS-NSDGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVL  262 (783)
T ss_pred             hhhhhhhhhhhhhhcccceecCCCCCceec-cccCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhh
Confidence            732       234567788888 6667654 44999999993 3322 222222     233588899988643 45555


Q ss_pred             cCC-CcEEEEeCC
Q psy10953        147 GED-KAVHMYSYK  158 (181)
Q Consensus       147 ~~d-~~v~i~~~~  158 (181)
                      +.| +.|++|++.
T Consensus       263 ~RdS~tIrlydi~  275 (783)
T KOG1008|consen  263 SRDSITIRLYDIC  275 (783)
T ss_pred             ccCcceEEEeccc
Confidence            554 688998874

>smart00320 WD40 WD40 repeats

Probab=97.70  E-value=0.00011  Score=36.41  Aligned_cols=37  Identities=32%  Similarity=0.524  Sum_probs=31.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYG   39 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d   39 (181)
                      .+..+..+...+.++.|+++++.+++++.|+.+++|+
T Consensus         4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320        4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3455566667789999999999999999999999996

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=97.69  E-value=0.0047  Score=39.66  Aligned_cols=95  Identities=17%  Similarity=0.221  Sum_probs=59.3

Q ss_pred             EEEEEEc---CCC-CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         14 MWNVVFS---PDD-KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        14 ~~~~~~s---~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      |.++++.   -|| +.|++|+.|..||+|+-.  ..+..+..... +.++.-... ..|+++..+|+|-+|+-..     
T Consensus         2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~-v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~RlWRi   77 (111)
T PF14783_consen    2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDK-VTSLCSLGG-GRFAYALANGTVGVYDRSQRLWRI   77 (111)
T ss_pred             eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccc-eEEEEEcCC-CEEEEEecCCEEEEEeCcceeeee
Confidence            3445544   333 468999999999999743  55555544344 446655554 5688888888888776531     


Q ss_pred             CCcccEEEEE-EcCCC---CEEEEEeCCCcEE
Q psy10953         85 GHSSWVLSTA-FTRDG---KFFISASADHTVR  112 (181)
Q Consensus        85 ~~~~~v~~~~-~s~~~---~~l~~~~~d~~i~  112 (181)
                      +.+..+.+++ ++.++   ..|++|..+|.|-
T Consensus        78 KSK~~~~~~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   78 KSKNQVTSMAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             ccCCCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence            1222344443 44443   3788999988774

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.69  E-value=0.0018  Score=51.20  Aligned_cols=139  Identities=11%  Similarity=0.130  Sum_probs=79.0

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEE--------
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLST--------   93 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~--------   93 (181)
                      ++..++.++.++.+..+|.++|+..-.....+........  .+..++.+..++.+.-+|..++...+-...        
T Consensus       119 ~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~  196 (394)
T PRK11138        119 AGGKVYIGSEKGQVYALNAEDGEVAWQTKVAGEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLR  196 (394)
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCCcccccCCCceecCCEE--ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCccccc
Confidence            3456677888999999999999987655443322111122  234566677788899999887654322111        


Q ss_pred             -EEcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCc--------EEEEEEcc--CCCEEEEEcCCCcEEEEeCCCC
Q psy10953         94 -AFTR--DGKFFISASADHTVRVWNFARRENMHTFKHADQ--------VWCVCVAP--DGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        94 -~~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~--------v~~~~~sp--~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                       .-+|  .+..++.++.++.+..+|..+++.........+        ...+.-+|  .+..++.++.++.+..+|..++
T Consensus       197 ~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG  276 (394)
T PRK11138        197 GESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSG  276 (394)
T ss_pred             CCCCCEEECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCC
Confidence             0122  123455667788898888888776554321100        00111122  2345555556666666666655


Q ss_pred             ee
Q psy10953        161 EE  162 (181)
Q Consensus       161 ~~  162 (181)
                      ++
T Consensus       277 ~~  278 (394)
T PRK11138        277 QI  278 (394)
T ss_pred             CE
Confidence            43

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.68  E-value=0.0038  Score=48.68  Aligned_cols=160  Identities=18%  Similarity=0.286  Sum_probs=86.6

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC------------------ceEEEEEECCCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG------------------KFTLSIAYSTDGH   66 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------------------~~~~~~~~s~d~~   66 (181)
                      ..+...........|||+|+.++... ++.|.+++..+++..++.. .+                  .....+-||||++
T Consensus        36 ~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~-dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~  113 (353)
T PF00930_consen   36 TPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTT-DGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSK  113 (353)
T ss_dssp             EESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES---TTTEEESB--HHHHHHTSSSSBSEEE-TTSS
T ss_pred             EECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEecc-ccceeEEcCccceeccccccccccceEECCCCC
Confidence            34444445567889999999998875 6799999988775544322 11                  0113578999999


Q ss_pred             EEEEeeCC-Cc-----------------------------------EEEEeCCCCC-------------cccEEEEEEcC
Q psy10953         67 WIASGALD-GI-----------------------------------INIFDANTGH-------------SSWVLSTAFTR   97 (181)
Q Consensus        67 ~l~~~~~d-~~-----------------------------------v~i~d~~~~~-------------~~~v~~~~~s~   97 (181)
                      +|+....| ..                                   +.++|+.++.             ...+..+.|.+
T Consensus       114 ~la~~~~d~~~v~~~~~~~~~~~~~~yp~~~~~~YPk~G~~np~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~  193 (353)
T PF00930_consen  114 YLAFLRFDEREVPEYPLPDYSPPDSQYPEVESIRYPKAGDPNPRVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSP  193 (353)
T ss_dssp             EEEEEEEE-TTS-EEEEEEESSSTESS-EEEEEE--BTTS---EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEE
T ss_pred             EEEEEEECCcCCceEEeeccCCccccCCcccccccCCCCCcCCceEEEEEECCCCcEEEeeeccccCCCccCcccceecC
Confidence            99865432 22                                   2233433322             12466789999


Q ss_pred             CCCEEEEE--eCCC---cEEEEecCCCceeeeee--cCCcE---EEEEEc-cCCCEE-EEEcCCCc--EEEEeCCCCeeE
Q psy10953         98 DGKFFISA--SADH---TVRVWNFARRENMHTFK--HADQV---WCVCVA-PDGDKF-VSVGEDKA--VHMYSYKPEEEV  163 (181)
Q Consensus        98 ~~~~l~~~--~~d~---~i~v~d~~~~~~~~~~~--~~~~v---~~~~~s-p~g~~l-~~~~~d~~--v~i~~~~~~~~~  163 (181)
                      +++.++..  +.+.   .+.++|..++.......  ....+   ....+. +++..+ .....+|.  |++++...+...
T Consensus       194 d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~~~  273 (353)
T PF00930_consen  194 DGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGKPR  273 (353)
T ss_dssp             TTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSEEE
T ss_pred             CCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEccccccee
Confidence            98833332  2332   36667776654332222  22211   234444 666554 44446665  445555544433


Q ss_pred             EEc
Q psy10953        164 EVN  166 (181)
Q Consensus       164 ~~~  166 (181)
                      .+.
T Consensus       274 ~lT  276 (353)
T PF00930_consen  274 QLT  276 (353)
T ss_dssp             ESS
T ss_pred             ccc
Confidence            333

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=97.68  E-value=0.0049  Score=47.14  Aligned_cols=133  Identities=18%  Similarity=0.235  Sum_probs=83.5

Q ss_pred             EEEEEcCCCCEEEEEeC-----C----CcEEEEeCC-CCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCC
Q psy10953         15 WNVVFSPDDKYVLSGSQ-----S----GKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDAN   83 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~-----d----~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~   83 (181)
                      .++...|+|.+-++.-.     .    ..-.+|.+. .+..+..+..+-....+++||||++.|+.... .+.++-|+..
T Consensus       114 ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d  193 (307)
T COG3386         114 NDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLD  193 (307)
T ss_pred             CceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecC
Confidence            45777889887665433     1    112455554 56665555443334458999999998887765 4777777664


Q ss_pred             C--C-------------CcccEEEEEEcCCCCEEEEEeCCC-cEEEEecCCCceeeeeecC-CcEEEEEEc-cCCCEEEE
Q psy10953         84 T--G-------------HSSWVLSTAFTRDGKFFISASADH-TVRVWNFARRENMHTFKHA-DQVWCVCVA-PDGDKFVS  145 (181)
Q Consensus        84 ~--~-------------~~~~v~~~~~s~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~~~-~~v~~~~~s-p~g~~l~~  145 (181)
                      .  +             +.+..-.++.+.+|.+.+++..++ .|..|+.. ++.+..+..+ ..+.+++|- |+.+.|+.
T Consensus       194 ~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~lP~~~~t~~~FgG~~~~~L~i  272 (307)
T COG3386         194 PATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIKLPVKRPTNPAFGGPDLNTLYI  272 (307)
T ss_pred             cccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEECCCCCCccceEeCCCcCEEEE
Confidence            1  1             112233456667788775444443 89999888 7778777755 677888885 55566655


Q ss_pred             EcC
Q psy10953        146 VGE  148 (181)
Q Consensus       146 ~~~  148 (181)
                      .+.
T Consensus       273 Ts~  275 (307)
T COG3386         273 TSA  275 (307)
T ss_pred             Eec
Confidence            553

>KOG3617|consensus

Probab=97.66  E-value=0.00037  Score=58.75  Aligned_cols=73  Identities=15%  Similarity=0.284  Sum_probs=62.8

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      |..+.+++|+|..-.|+.|-..|.+.+|...+.+.......|...+..+.||++|..+.++..-|.|.+|...
T Consensus        59 P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   59 PVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence            3345678999998889999999999999988888777766777778889999999999999999999999764

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.61  E-value=0.023  Score=45.23  Aligned_cols=104  Identities=21%  Similarity=0.296  Sum_probs=67.2

Q ss_pred             EEEEEcCCCCEEEEE-eCC----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC-----------cEE
Q psy10953         15 WNVVFSPDDKYVLSG-SQS----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG-----------IIN   78 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~-~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~-----------~v~   78 (181)
                      ...++||||+++|.+ +..    .+++++|+++++.+......... ..+.|.+|++.|+....+.           .|+
T Consensus       127 ~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~-~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~  205 (414)
T PF02897_consen  127 GGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKF-SSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY  205 (414)
T ss_dssp             EEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEES-EEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred             eeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccccc-ceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence            467899999999854 222    36999999999876432111121 2389999999887765433           377


Q ss_pred             EEeCCCCC-----------ccc-EEEEEEcCCCCEEEEEe-CC---CcEEEEecCCC
Q psy10953         79 IFDANTGH-----------SSW-VLSTAFTRDGKFFISAS-AD---HTVRVWNFARR  119 (181)
Q Consensus        79 i~d~~~~~-----------~~~-v~~~~~s~~~~~l~~~~-~d---~~i~v~d~~~~  119 (181)
                      .|.+.+..           ... ...+..++++++++... ..   ..+++.|+...
T Consensus       206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            77765421           122 56788999999766433 32   34777787764

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>KOG4190|consensus

Probab=97.60  E-value=0.0002  Score=57.63  Aligned_cols=146  Identities=15%  Similarity=0.294  Sum_probs=97.2

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE-EEec--C--CceEEEEEECCCCCEEEEe-eCCCcEEEEe
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ-IFDT--R--GKFTLSIAYSTDGHWIASG-ALDGIINIFD   81 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~-~~~~--~--~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d   81 (181)
                      +.+...+.++.|-.+-++++++  |+-|.+||---++.+. ....  +  +..+.++. +-+...+++| +...+|+++|
T Consensus       781 ~aHkk~i~~igfL~~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~-nv~~~iliAgcsaeSTVKl~D  857 (1034)
T KOG4190|consen  781 QAHKKPIHDIGFLADLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE-NVDRHILIAGCSAESTVKLFD  857 (1034)
T ss_pred             hhccCcccceeeeeccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc-cCcchheeeeccchhhheeee
Confidence            4566677788888887777765  7999999976665543 2221  2  22333322 2244444444 6788999999


Q ss_pred             CCCC-------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCC-cEEEEEEccCCCEEEEEc
Q psy10953         82 ANTG-------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD-QVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        82 ~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~sp~g~~l~~~~  147 (181)
                      .+.+             ....+++++.-+.|++++.+-.+|.|.+.|.++++.+..+.... ...-++ .|..+.++...
T Consensus       858 aRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~sa  936 (1034)
T KOG4190|consen  858 ARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSA  936 (1034)
T ss_pred             cccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhc
Confidence            8753             23457889999999999999999999999999999887765322 122222 35556666666


Q ss_pred             CCCcEEE-EeC
Q psy10953        148 EDKAVHM-YSY  157 (181)
Q Consensus       148 ~d~~v~i-~~~  157 (181)
                      .|..+.+ |..
T Consensus       937 ldHslaVnWha  947 (1034)
T KOG4190|consen  937 LDHSLAVNWHA  947 (1034)
T ss_pred             ccceeEeeehh
Confidence            6766666 653

>PRK11138 outer membrane biogenesis protein BamB; Provisional

Probab=97.56  E-value=0.0057  Score=48.41  Aligned_cols=129  Identities=13%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEE-----EEEcC
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLS-----TAFTR   97 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~-----~~~s~   97 (181)
                      +..++.++.++.+..+|..+|+.+-.......  ..+  ..++..++.++.++.+..+|..++...+-..     ..-+|
T Consensus       256 ~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~--~~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp  331 (394)
T PRK11138        256 GGVVYALAYNGNLVALDLRSGQIVWKREYGSV--NDF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAP  331 (394)
T ss_pred             CCEEEEEEcCCeEEEEECCCCCEEEeecCCCc--cCc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCC
Confidence            45666777899999999999987543322111  111  1245667777888888888887664321100     00112


Q ss_pred             --CCCEEEEEeCCCcEEEEecCCCceeeeeec-CCcEEE-EEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         98 --DGKFFISASADHTVRVWNFARRENMHTFKH-ADQVWC-VCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        98 --~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~-~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                        .+..++.++.+|.++.+|..+++.+..... ...+.+ ..+  .+..|+.++.+|.++.++.
T Consensus       332 ~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~  393 (394)
T PRK11138        332 VLYNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR  393 (394)
T ss_pred             EEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence              245667788899999999999988777653 233332 222  2457888899999887764

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=97.56  E-value=0.012  Score=46.18  Aligned_cols=141  Identities=16%  Similarity=0.212  Sum_probs=78.0

Q ss_pred             eeeeccC--eeeEEEEEEcCCCCEEEEEe-----------CCC-cEEEEeCC--CCcEE--EEEecCCceEEEEEECCCC
Q psy10953          4 ISKINVG--PVDMWNVVFSPDDKYVLSGS-----------QSG-KINLYGVE--TGKLE--QIFDTRGKFTLSIAYSTDG   65 (181)
Q Consensus         4 ~~~~~~~--~~~~~~~~~s~~g~~l~~~~-----------~d~-~i~~~d~~--~~~~~--~~~~~~~~~~~~~~~s~d~   65 (181)
                      +..++.+  -.....|+|.++|+++++-.           ..+ .|.+++-.  +++..  ..+...-.....+++.++|
T Consensus         4 ~~l~A~~p~~~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~vfa~~l~~p~Gi~~~~~G   83 (367)
T TIGR02604         4 VTLFAAEPLLRNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSNVFAEELSMVTGLAVAVGG   83 (367)
T ss_pred             EEEEECCCccCCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeEEeecCCCCccceeEecCC
Confidence            4444544  34467899999999877653           223 67666543  34432  3333222234578888888


Q ss_pred             CEEEEeeCCCcEEEEeCCC-----------------C---CcccEEEEEEcCCCCEEEEEeCC-----------------
Q psy10953         66 HWIASGALDGIINIFDANT-----------------G---HSSWVLSTAFTRDGKFFISASAD-----------------  108 (181)
Q Consensus        66 ~~l~~~~~d~~v~i~d~~~-----------------~---~~~~v~~~~~s~~~~~l~~~~~d-----------------  108 (181)
                       .++ +......++.|...                 .   +......++|.|+|++.++.+..                 
T Consensus        84 -lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~  161 (367)
T TIGR02604        84 -VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQG  161 (367)
T ss_pred             -EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccc
Confidence             444 33333222333311                 0   12235678899999977765521                 


Q ss_pred             --CcEEEEecCCCceeeeeec-CCcEEEEEEccCCCEEEEEc
Q psy10953        109 --HTVRVWNFARRENMHTFKH-ADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       109 --~~i~v~d~~~~~~~~~~~~-~~~v~~~~~sp~g~~l~~~~  147 (181)
                        +.|.-++....+ +..+.. ....+.++|+|+|+.+++-.
T Consensus       162 ~~g~i~r~~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       162 LGGGLFRYNPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             cCceEEEEecCCCe-EEEEecCcCCCccceECCCCCEEEEcc
Confidence              335555554433 222221 22367899999998877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG2114|consensus

Probab=97.55  E-value=0.0067  Score=51.32  Aligned_cols=142  Identities=17%  Similarity=0.246  Sum_probs=90.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-CEEEEeeCCC-----cEEEEeCCCC-------
Q psy10953         19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-HWIASGALDG-----IINIFDANTG-------   85 (181)
Q Consensus        19 ~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d~-----~v~i~d~~~~-------   85 (181)
                      |++.+..++.|+.+|.|.+++-. -+.++-|+.....+...-+..++ ..|++.+.|.     .+++|+++.-       
T Consensus        31 ~~s~~~~vvigt~~G~V~~Ln~s-~~~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~  109 (933)
T KOG2114|consen   31 CSSSTGSVVIGTADGRVVILNSS-FQLIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQ  109 (933)
T ss_pred             EcCCCceEEEeeccccEEEeccc-ceeeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcc
Confidence            68899999999999999988643 34435555444332233334344 5677765543     5899998532       


Q ss_pred             --------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEe--cCCCc-eeeeee--cCCcEEEEEEccCCCEEEEE
Q psy10953         86 --------------HSSWVLSTAFTRDGKFFISASADHTVRVWN--FARRE-NMHTFK--HADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        86 --------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d--~~~~~-~~~~~~--~~~~v~~~~~sp~g~~l~~~  146 (181)
                                    ...++..++.+.+-+.+|+|-.+|.|..+-  +.+.+ ....+.  ...+|+++++-.+++.++-+
T Consensus       110 c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv  189 (933)
T KOG2114|consen  110 CLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFV  189 (933)
T ss_pred             eeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEE
Confidence                          112345667777778899999999999884  22211 112222  35679999999888873333


Q ss_pred             cCCCcEEEEeCCCCe
Q psy10953        147 GEDKAVHMYSYKPEE  161 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~  161 (181)
                      ..-..|.+|.+....
T Consensus       190 ~Tt~~V~~y~l~gr~  204 (933)
T KOG2114|consen  190 ATTEQVMLYSLSGRT  204 (933)
T ss_pred             EecceeEEEEecCCC
Confidence            334578888886333

>smart00320 WD40 WD40 repeats

Probab=97.54  E-value=0.00052  Score=33.78  Aligned_cols=28  Identities=39%  Similarity=0.673  Sum_probs=14.4

Q ss_pred             ceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         54 KFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        54 ~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      ..+.++.|++++..+++++.|+.+++|+
T Consensus        13 ~~i~~~~~~~~~~~~~~~~~d~~~~~~~   40 (40)
T smart00320       13 GPVTSVAFSPDGKYLASASDDGTIKLWD   40 (40)
T ss_pred             CceeEEEECCCCCEEEEecCCCeEEEcC
Confidence            3344555555555555555555555553

Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.

>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]

Probab=97.53  E-value=0.00099  Score=50.18  Aligned_cols=149  Identities=18%  Similarity=0.320  Sum_probs=97.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCc------------eEEEEEECCCC--CEEEE
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-----KLEQIFDTRGK------------FTLSIAYSTDG--HWIAS   70 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~------------~~~~~~~s~d~--~~l~~   70 (181)
                      ++..+..+.|...|.+|++|..-|.|.+|.-...     ++...|+.|..            -+..+.|-.++  ..++.
T Consensus        25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl  104 (460)
T COG5170          25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL  104 (460)
T ss_pred             ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence            3445789999999999999998899999965422     22233443321            12345555443  46778


Q ss_pred             eeCCCcEEEEeCCC---------------------------------------------------CCcccEEEEEEcCCC
Q psy10953         71 GALDGIINIFDANT---------------------------------------------------GHSSWVLSTAFTRDG   99 (181)
Q Consensus        71 ~~~d~~v~i~d~~~---------------------------------------------------~~~~~v~~~~~s~~~   99 (181)
                      ...|.++++|.+..                                                   .|...++++.|..|.
T Consensus       105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~  184 (460)
T COG5170         105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK  184 (460)
T ss_pred             ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence            88999999997531                                                   022235677888888


Q ss_pred             CEEEEEeCCCcEEEEecCCCc---eeeeee-c-----CCcEEEEEEccCCCE-EEEEcCCCcEEEEeCCC
Q psy10953        100 KFFISASADHTVRVWNFARRE---NMHTFK-H-----ADQVWCVCVAPDGDK-FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       100 ~~l~~~~~d~~i~v~d~~~~~---~~~~~~-~-----~~~v~~~~~sp~g~~-l~~~~~d~~v~i~~~~~  159 (181)
                      +.++++. |=.|.+|++.-..   .+..++ |     ...|++..|+|.... +.-.+.-|.|++-|+++
T Consensus       185 et~lSaD-dLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq  253 (460)
T COG5170         185 ETLLSAD-DLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQ  253 (460)
T ss_pred             heeeecc-ceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhh
Confidence            8887655 6689999986422   112222 2     235788999997554 44455678999988863

>KOG4640|consensus

Probab=97.49  E-value=0.00081  Score=54.75  Aligned_cols=75  Identities=9%  Similarity=0.186  Sum_probs=63.3

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEE-EEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVW-CVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~-~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .+.-+-|+|.-.++|.+..+|.+.+..+. .+.+.+++ +...+. ++||.|||+.++.|-.||+|++-|..++..+.
T Consensus        22 ~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~   98 (665)
T KOG4640|consen   22 NIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV   98 (665)
T ss_pred             ceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence            35567899999999999999999998887 66778887 555566 99999999999999999999999998876554

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.49  E-value=0.035  Score=44.34  Aligned_cols=66  Identities=17%  Similarity=0.221  Sum_probs=47.9

Q ss_pred             EEEEcCCCCEEEEEeCC----------C-cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         16 NVVFSPDDKYVLSGSQS----------G-KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d----------~-~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      .++.+|.|..+|..-++          . .|++|+.. |+++..+......+.++.|+.+. .|+....||.+++||..
T Consensus        33 ~va~a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~s-G~ll~~i~w~~~~iv~~~wt~~e-~LvvV~~dG~v~vy~~~  109 (410)
T PF04841_consen   33 IVAVAPYGGPIAIIRDESKLVPVGSAKPNSIQIYSSS-GKLLSSIPWDSGRIVGMGWTDDE-ELVVVQSDGTVRVYDLF  109 (410)
T ss_pred             eEEEcCCCceEEEEecCcccccccCCCCcEEEEECCC-CCEeEEEEECCCCEEEEEECCCC-eEEEEEcCCEEEEEeCC
Confidence            56788888888877554          1 48888765 55555555544667799998854 46677889999999983

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.46  E-value=0.023  Score=46.39  Aligned_cols=146  Identities=16%  Similarity=0.272  Sum_probs=90.9

Q ss_pred             EEEcCCCCEEEEEeCCC------------------cEEEEeCCCCcEEEEEecCCceEE------EEEEC----CCCC--
Q psy10953         17 VVFSPDDKYVLSGSQSG------------------KINLYGVETGKLEQIFDTRGKFTL------SIAYS----TDGH--   66 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~~------~~~~s----~d~~--   66 (181)
                      .++.+.+.+++.++.++                  .+.-+|.++|+..-.++.......      ...+.    -+|.  
T Consensus       222 pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~  301 (488)
T cd00216         222 PTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPKDGKPV  301 (488)
T ss_pred             eeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEeccccCCCee
Confidence            34455566777776554                  799999999998765543211000      01111    2343  


Q ss_pred             -EEEEeeCCCcEEEEeCCCCCcccEEE-----EEEcCCCCEEEEE-----------------eCCCcEEEEecCCCceee
Q psy10953         67 -WIASGALDGIINIFDANTGHSSWVLS-----TAFTRDGKFFISA-----------------SADHTVRVWNFARRENMH  123 (181)
Q Consensus        67 -~l~~~~~d~~v~i~d~~~~~~~~v~~-----~~~s~~~~~l~~~-----------------~~d~~i~v~d~~~~~~~~  123 (181)
                       .++.+..+|.+.-.|+++++..+-..     ++.+| +..++..                 ..++.+.-.|..+++.+.
T Consensus       302 ~~V~~g~~~G~l~ald~~tG~~~W~~~~~~~~~~~~~-~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W  380 (488)
T cd00216         302 PAIVHAPKNGFFYVLDRTTGKLISARPEVEQPMAYDP-GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKVVW  380 (488)
T ss_pred             EEEEEECCCceEEEEECCCCcEeeEeEeeccccccCC-ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcEee
Confidence             56778889999999999887554332     33444 3333321                 135788889999998887


Q ss_pred             eeecC---------CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        124 TFKHA---------DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       124 ~~~~~---------~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      +....         .+...-.....+..++.++.|+.++.++..+|+++
T Consensus       381 ~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~l  429 (488)
T cd00216         381 EKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKEL  429 (488)
T ss_pred             EeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCcee
Confidence            76533         11111111125678888899999999999888765

The alignment model contains an 8-bladed beta-propeller.

>KOG3617|consensus

Probab=97.46  E-value=0.00028  Score=59.41  Aligned_cols=101  Identities=16%  Similarity=0.345  Sum_probs=77.7

Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC------
Q psy10953         15 WNVVFSPDDKYVLSGSQ----SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT------   84 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~------   84 (181)
                      .-.+|+|..-+++.++.    .|.+.+| .++|....... ....+.+++|+|..-.|+.|=..|.+.+|...+      
T Consensus        19 ti~SWHPsePlfAVA~fS~er~GSVtIf-adtGEPqr~Vt-~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv   96 (1416)
T KOG3617|consen   19 TISSWHPSEPLFAVASFSPERGGSVTIF-ADTGEPQRDVT-YPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTV   96 (1416)
T ss_pred             cccccCCCCceeEEEEecCCCCceEEEE-ecCCCCCcccc-cceehhhhccChHHHHHhhccccceeEEEecCCceeeee
Confidence            44679999999988775    3678887 45565433222 122234799999888888888889999998753      


Q ss_pred             --CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC
Q psy10953         85 --GHSSWVLSTAFTRDGKFFISASADHTVRVWNFA  117 (181)
Q Consensus        85 --~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~  117 (181)
                        .|...+..+.|||+|..++++..-|.+.+|...
T Consensus        97 ~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d  131 (1416)
T KOG3617|consen   97 VETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYD  131 (1416)
T ss_pred             ccCCCCCceeEEecCCCCeEEEcCCCceeEEEEee
Confidence              366778999999999999999999999999765

>KOG0882|consensus

Probab=97.46  E-value=0.00038  Score=54.63  Aligned_cols=138  Identities=17%  Similarity=0.140  Sum_probs=95.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCC---CcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCCCCcc---------
Q psy10953         22 DDKYVLSGSQSGKINLYGVET---GKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANTGHSS---------   88 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~---~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~~~~~---------   88 (181)
                      .-+++.+++.||.+++|--..   -+++..+..|-..+.+++.+-||.++.+.+. |..++++|+......         
T Consensus        19 ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP   98 (558)
T KOG0882|consen   19 KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP   98 (558)
T ss_pred             hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC
Confidence            556888999999999996432   1233334445555667888889999999777 999999998643211         


Q ss_pred             cEEEEEEcCCC--CEEEE-EeCCCcEEEEecCCCceeee-e--ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         89 WVLSTAFTRDG--KFFIS-ASADHTVRVWNFARRENMHT-F--KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        89 ~v~~~~~s~~~--~~l~~-~~~d~~i~v~d~~~~~~~~~-~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      .-.....+|..  .+++. .-.++.+.++|-+...+... +  .|..+|..+.+.|.+..+++....|.|..|....
T Consensus        99 g~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~  175 (558)
T KOG0882|consen   99 GFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEG  175 (558)
T ss_pred             CceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCC
Confidence            11111222321  13333 33578999999876543322 2  3788999999999999999999899999999863

>KOG0309|consensus

Probab=97.45  E-value=0.0012  Score=54.97  Aligned_cols=146  Identities=12%  Similarity=0.223  Sum_probs=94.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEec-CCceEEEEEECCCC---CEEEEeeCCCcEEEEeCC-----
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDT-RGKFTLSIAYSTDG---HWIASGALDGIINIFDAN-----   83 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~-~~~~~~~~~~s~d~---~~l~~~~~d~~v~i~d~~-----   83 (181)
                      +..++++|.|+-++.++.-| +.+.|+. .+..-..+.+ ....+-...|+|..   .++++.+ .....+|++.     
T Consensus        27 ~~a~si~p~grdi~lAsr~g-l~i~dld~p~~ppr~l~h~tpw~vad~qws~h~a~~~wiVsts-~qkaiiwnlA~ss~~  104 (1081)
T KOG0309|consen   27 FNAVSINPSGRDIVLASRQG-LYIIDLDDPFTPPRWLHHITPWQVADVQWSPHPAKPYWIVSTS-NQKAIIWNLAKSSSN  104 (1081)
T ss_pred             ccceeeccccchhhhhhhcC-eEEEeccCCCCCceeeeccCcchhcceecccCCCCceeEEecC-cchhhhhhhhcCCcc
Confidence            35678899999998887554 3445554 2332233322 23344456776643   3455444 3345567664     


Q ss_pred             ------CCCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCce-eeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 ------TGHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARREN-MHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ------~~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~-~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                            -+|...|+.+.|.|+. ..+++++.|-.+..||+++... +..+. ....-..+.++-..-.+.+.+..+.|++
T Consensus       105 aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~v  184 (1081)
T KOG0309|consen  105 AIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFV  184 (1081)
T ss_pred             ceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCcceeeeecccccCceeeecccCcchhhhccCCceEE
Confidence                  2677889999999976 4899999999999999998653 33332 2334455677654445555677789999


Q ss_pred             EeCCCCe
Q psy10953        155 YSYKPEE  161 (181)
Q Consensus       155 ~~~~~~~  161 (181)
                      |+...|.
T Consensus       185 wd~r~gs  191 (1081)
T KOG0309|consen  185 WDLRKGS  191 (1081)
T ss_pred             EeccCCC
Confidence            9987663

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.45  E-value=0.024  Score=42.57  Aligned_cols=147  Identities=18%  Similarity=0.261  Sum_probs=89.0

Q ss_pred             EEEcCCCCEEEEEeCC-----CcEEEEeCCCC-cEEEEEecCCceEEEEEECCCCCEEEEeeC------C----------
Q psy10953         17 VVFSPDDKYVLSGSQS-----GKINLYGVETG-KLEQIFDTRGKFTLSIAYSTDGHWIASGAL------D----------   74 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d-----~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~------d----------   74 (181)
                      =.|||||.+|.+.-+|     |.|-+||.+.+ +.+..+..++--.-.+.+.+||+.++.+..      |          
T Consensus       119 Gvfs~dG~~LYATEndfd~~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNlds  198 (366)
T COG3490         119 GVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDS  198 (366)
T ss_pred             cccCCCCcEEEeecCCCCCCCceEEEEecccccceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhh
Confidence            3589999999876554     57999998733 333455555544457899999999887543      1          


Q ss_pred             --CcEEEEeCCCC------------CcccEEEEEEcCCCCEEEEEeCCCc-----EEEEecCCCceeeeee--------c
Q psy10953         75 --GIINIFDANTG------------HSSWVLSTAFTRDGKFFISASADHT-----VRVWNFARRENMHTFK--------H  127 (181)
Q Consensus        75 --~~v~i~d~~~~------------~~~~v~~~~~s~~~~~l~~~~~d~~-----i~v~d~~~~~~~~~~~--------~  127 (181)
                        -++.+.|..++            +...|..++..+||..++-+-..|.     -.+=-...++++.-+.        .
T Consensus       199 MePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dgtvwfgcQy~G~~~d~ppLvg~~~~g~~l~~~~~pee~~~~~  278 (366)
T COG3490         199 MEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDGTVWFGCQYRGPRNDLPPLVGHFRKGEPLEFLDLPEEQTAAF  278 (366)
T ss_pred             cCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCCcEEEEEEeeCCCccCCcceeeccCCCcCcccCCCHHHHHHH
Confidence              12334443222            2345788888888887655544331     1111112223332222        1


Q ss_pred             CCcEEEEEEccCCCEEEEEcC-CCcEEEEeCCCCeeE
Q psy10953        128 ADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYKPEEEV  163 (181)
Q Consensus       128 ~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~~~~~~  163 (181)
                      ...|-+++.+.+...++..+. .+...+||..+|..+
T Consensus       279 anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv  315 (366)
T COG3490         279 ANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVV  315 (366)
T ss_pred             HhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEE
Confidence            234667888877777777775 457789999887544

>KOG1920|consensus

Probab=97.45  E-value=0.019  Score=50.38  Aligned_cols=144  Identities=17%  Similarity=0.206  Sum_probs=96.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--------   83 (181)
                      ..+-++.|..+++.+..+..+|.|.+-|..+....-.-...+. +.+++||||+++++......++.+-+-.        
T Consensus        69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~eivg~vd~G-I~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~  147 (1265)
T KOG1920|consen   69 DEIVSVQFLADTNSICVITALGDIILVDPETLELEIVGNVDNG-ISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP  147 (1265)
T ss_pred             cceEEEEEecccceEEEEecCCcEEEEcccccceeeeeeccCc-eEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence            4577888888888888888999999998877765443333344 5689999999999988887777665420        


Q ss_pred             --------C-----C--------C--------------c---------ccEEEEEEcCCCCEEEEEe----CC-CcEEEE
Q psy10953         84 --------T-----G--------H--------------S---------SWVLSTAFTRDGKFFISAS----AD-HTVRVW  114 (181)
Q Consensus        84 --------~-----~--------~--------------~---------~~v~~~~~s~~~~~l~~~~----~d-~~i~v~  114 (181)
                              .     |        +              .         ..=..+.|--||+++++..    .+ .++++|
T Consensus       148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~  227 (1265)
T KOG1920|consen  148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY  227 (1265)
T ss_pred             cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence                    0     0        0              0         0012377888999888733    23 789999


Q ss_pred             ecCCCceeeee-ecCCcEEEEEEccCCCEEEEEcC---CCcEEEEeC
Q psy10953        115 NFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGE---DKAVHMYSY  157 (181)
Q Consensus       115 d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~---d~~v~i~~~  157 (181)
                      |-. +..-..- +..+--.+++|-|.|..+++...   |+.|.+|.-
T Consensus       228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr  273 (1265)
T KOG1920|consen  228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER  273 (1265)
T ss_pred             ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec
Confidence            976 3222111 12233457899999999988653   456777764

>KOG2114|consensus

Probab=97.44  E-value=0.012  Score=49.77  Aligned_cols=138  Identities=16%  Similarity=0.273  Sum_probs=89.1

Q ss_pred             CCEEEEEeCCC-----cEEEEeCCCC------cEE---EEEe----cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC-
Q psy10953         23 DKYVLSGSQSG-----KINLYGVETG------KLE---QIFD----TRGKFTLSIAYSTDGHWIASGALDGIINIFDAN-   83 (181)
Q Consensus        23 g~~l~~~~~d~-----~i~~~d~~~~------~~~---~~~~----~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~-   83 (181)
                      ..+|++-+.|+     .+++|+++..      ++.   ..+.    ....+..+++.+.+-+.+|.|-.||.|..+.-. 
T Consensus        77 ~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi  156 (933)
T KOG2114|consen   77 QNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDI  156 (933)
T ss_pred             ceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcc
Confidence            35677665554     5999998532      222   2222    123345578888888999999999999998532 


Q ss_pred             -----------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-ee-cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         84 -----------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FK-HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        84 -----------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                                 .....+|+++++..+++.++.+.....|.+|.+....+... .. +.....|..+++....|++++ +.
T Consensus       157 ~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e  235 (933)
T KOG2114|consen  157 LRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SE  235 (933)
T ss_pred             hhccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-Cc
Confidence                       11245799999999998634444456899999885542222 33 455688888887665455554 34


Q ss_pred             cEEEEeCCCCe
Q psy10953        151 AVHMYSYKPEE  161 (181)
Q Consensus       151 ~v~i~~~~~~~  161 (181)
                      .+..|+.+..+
T Consensus       236 ~l~fY~sd~~~  246 (933)
T KOG2114|consen  236 FLYFYDSDGRG  246 (933)
T ss_pred             eEEEEcCCCcc
Confidence            67777765433

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=97.42  E-value=0.029  Score=41.96  Aligned_cols=142  Identities=12%  Similarity=0.187  Sum_probs=89.7

Q ss_pred             cCCCCEEEEEeCCCcEEEEeC-CCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC---C---------
Q psy10953         20 SPDDKYVLSGSQSGKINLYGV-ETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---H---------   86 (181)
Q Consensus        20 s~~g~~l~~~~~d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---~---------   86 (181)
                      ...++.|+.|..+| +.+++. ...+.......  ..+..+..-++-+.|+.-+ |+.++++++..-   .         
T Consensus         4 ~~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~--~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~   79 (275)
T PF00780_consen    4 DSWGDRLLVGTEDG-LYVYDLSDPSKPTRILKL--SSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPK   79 (275)
T ss_pred             ccCCCEEEEEECCC-EEEEEecCCccceeEeec--ceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccc
Confidence            35788899999998 899988 33343333322  2267788888777666554 599999997521   0         


Q ss_pred             ----------cccEEEEE--EcCCCCEEEEEeCCCcEEEEecCCC-----ceeeeeecCCcEEEEEEccCCCEEEEEcCC
Q psy10953         87 ----------SSWVLSTA--FTRDGKFFISASADHTVRVWNFARR-----ENMHTFKHADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        87 ----------~~~v~~~~--~s~~~~~l~~~~~d~~i~v~d~~~~-----~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                                ...+...+  -.+.+...++.....+|.+|.....     .....+..++.+.+++|.  ++.++.+. .
T Consensus        80 ~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~-~  156 (275)
T PF00780_consen   80 SRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGT-S  156 (275)
T ss_pred             cccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEe-C
Confidence                      01122222  1123444444555568888877552     455666777889999998  55566665 4


Q ss_pred             CcEEEEeCCCCeeEEEcCC
Q psy10953        150 KAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~~~~~  168 (181)
                      +...+.|+.++....+...
T Consensus       157 ~~f~~idl~~~~~~~l~~~  175 (275)
T PF00780_consen  157 KGFYLIDLNTGSPSELLDP  175 (275)
T ss_pred             CceEEEecCCCCceEEeCc
Confidence            5688889987766665543

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.38  E-value=0.04  Score=42.51  Aligned_cols=145  Identities=14%  Similarity=0.155  Sum_probs=88.9

Q ss_pred             CEEEEEeCCCcEEEEeCC-CCcEEEEE----ecCCceE-EEEEECCCCCEEEEeeCCCcEEEEeCCCCCc----------
Q psy10953         24 KYVLSGSQSGKINLYGVE-TGKLEQIF----DTRGKFT-LSIAYSTDGHWIASGALDGIINIFDANTGHS----------   87 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~-~~~~~~~~----~~~~~~~-~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~----------   87 (181)
                      +.+.+-|.||.+.-..+. .|+..+..    ......+ ..-.++..+..++..+.+|.|+-.|+.....          
T Consensus       148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~t  227 (342)
T PF06433_consen  148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPWSLLT  227 (342)
T ss_dssp             TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEEESS-
T ss_pred             CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcccccC
Confidence            457788889999988886 66654321    1112211 1233444555666678888888777643210          


Q ss_pred             ------cc----EEEEEEcCCCCEEEEEeC---CC-------cEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEE
Q psy10953         88 ------SW----VLSTAFTRDGKFFISASA---DH-------TVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSV  146 (181)
Q Consensus        88 ------~~----v~~~~~s~~~~~l~~~~~---d~-------~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~  146 (181)
                            .|    -.-+++++..+.|.....   ++       .|=+||+.+++.+..++...++.++.++.+.+ +|++.
T Consensus       228 ~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~~  307 (342)
T PF06433_consen  228 DAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYAL  307 (342)
T ss_dssp             HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEEE
T ss_pred             ccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEEE
Confidence                  11    123566665443332221   11       47777999999998888767788999999877 55554


Q ss_pred             -cCCCcEEEEeCCCCeeEEEcCC
Q psy10953        147 -GEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       147 -~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                       ..++.+.+||..++..++...+
T Consensus       308 ~~~~~~l~v~D~~tGk~~~~~~~  330 (342)
T PF06433_consen  308 SAGDGTLDVYDAATGKLVRSIEQ  330 (342)
T ss_dssp             ETTTTEEEEEETTT--EEEEE--
T ss_pred             cCCCCeEEEEeCcCCcEEeehhc
Confidence             4578999999999998876654

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=97.37  E-value=0.027  Score=43.24  Aligned_cols=136  Identities=15%  Similarity=0.252  Sum_probs=81.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEE--eCCC-----
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIF--DANT-----   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~--d~~~-----   84 (181)
                      +.+++-- +|+ |+++. .++|.+|++...+ +...-..+. ..+.++..  .+.+++.|+....+.++  +...     
T Consensus        91 V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~--~~~~I~vgD~~~sv~~~~~~~~~~~l~~  165 (321)
T PF03178_consen   91 VTAICSF-NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV--FKNYILVGDAMKSVSLLRYDEENNKLIL  165 (321)
T ss_dssp             EEEEEEE-TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE--ETTEEEEEESSSSEEEEEEETTTE-EEE
T ss_pred             ceEhhhh-CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec--cccEEEEEEcccCEEEEEEEccCCEEEE
Confidence            4555443 444 54444 4799999998887 665444332 23334433  46688899888888876  4321     


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-------Cc----eeeeeecCCcEEEE---EEccC--CC---
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR-------RE----NMHTFKHADQVWCV---CVAPD--GD---  141 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-------~~----~~~~~~~~~~v~~~---~~sp~--g~---  141 (181)
                          ....++.++.|-++++.++.+..+|++.++....       +.    ....+...+.|+++   ++.|.  +.   
T Consensus       166 va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~  245 (321)
T PF03178_consen  166 VARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESP  245 (321)
T ss_dssp             EEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TT
T ss_pred             EEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCccc
Confidence                1245678888887778999999999999997652       11    23344556677777   55552  22   


Q ss_pred             ---EEEEEcCCCcEEE
Q psy10953        142 ---KFVSVGEDKAVHM  154 (181)
Q Consensus       142 ---~l~~~~~d~~v~i  154 (181)
                         .++.++.+|.|..
T Consensus       246 ~~~~i~~~T~~G~Ig~  261 (321)
T PF03178_consen  246 NRPQILYGTVDGSIGV  261 (321)
T ss_dssp             EEEEEEEEETTS-EEE
T ss_pred             ccceEEEEecCCEEEE
Confidence               3677778888773

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=97.34  E-value=0.018  Score=47.17  Aligned_cols=136  Identities=10%  Similarity=0.167  Sum_probs=84.7

Q ss_pred             EEEEEEcCCCCEEE-EEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC----CEEEEeeCCCcEEEEeCCCC-
Q psy10953         14 MWNVVFSPDDKYVL-SGS--QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG----HWIASGALDGIINIFDANTG-   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~-~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~----~~l~~~~~d~~v~i~d~~~~-   85 (181)
                      +..++|. ||+.++ +.-  ..|++++=|.   +.+..|.    .+.+++|+|-+    -.|.+...-+.|.+|-+... 
T Consensus        22 vhGlaWT-DGkqVvLT~L~l~~gE~kfGds---~viGqFE----hV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~   93 (671)
T PF15390_consen   22 VHGLAWT-DGKQVVLTDLQLHNGEPKFGDS---KVIGQFE----HVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST   93 (671)
T ss_pred             ccceEec-CCCEEEEEeeeeeCCccccCCc---cEeeccc----eeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence            3688887 666554 432  3555554443   3344443    25688998853    34666667789999987511 


Q ss_pred             -Cc--------------c--cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeeeecCCcEEEEEEccCCCEEEEE
Q psy10953         86 -HS--------------S--WVLSTAFTRDGKFFISASADHTVRVWNFARREN--MHTFKHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        86 -~~--------------~--~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~  146 (181)
                       +.              -  -...+.|+|....|+.-.....-.+++......  -..+...+.|.|.||.+||++++++
T Consensus        94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA  173 (671)
T PF15390_consen   94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA  173 (671)
T ss_pred             cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence             10              0  123567999888777777655555666554332  2334567889999999999997665


Q ss_pred             cC-CCcEEEEeC
Q psy10953        147 GE-DKAVHMYSY  157 (181)
Q Consensus       147 ~~-d~~v~i~~~  157 (181)
                      -. .-.-++||-
T Consensus       174 vGSsLHSyiWd~  185 (671)
T PF15390_consen  174 VGSSLHSYIWDS  185 (671)
T ss_pred             eCCeEEEEEecC
Confidence            43 335678884

>KOG4649|consensus

Probab=97.27  E-value=0.043  Score=40.72  Aligned_cols=64  Identities=25%  Similarity=0.281  Sum_probs=52.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG   85 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~   85 (181)
                      -|.+++.|+..+.+++.+..+|.+...+...+..-......+++..+..|+.|+..+..|.++.
T Consensus        62 vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~  125 (354)
T KOG4649|consen   62 VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTY  125 (354)
T ss_pred             ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEcCCCceEEEecCCCcEEEeccccc
Confidence            3667889999999999999999887777665554345667889999999999999999998754

>KOG1912|consensus

Probab=97.25  E-value=0.00079  Score=56.24  Aligned_cols=94  Identities=15%  Similarity=0.316  Sum_probs=73.9

Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeCCCC---------
Q psy10953         25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDANTG---------   85 (181)
Q Consensus        25 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~~~~---------   85 (181)
                      ++|.|...|+|-++|+.++.+...+..|...+.++.|-.... |++.+          .-+.+.+-|+++|         
T Consensus       439 LvAvGT~sGTV~vvdvst~~v~~~fsvht~~VkgleW~g~ss-lvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~  517 (1062)
T KOG1912|consen  439 LVAVGTNSGTVDVVDVSTNAVAASFSVHTSLVKGLEWLGNSS-LVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQ  517 (1062)
T ss_pred             eEEeecCCceEEEEEecchhhhhhhcccccceeeeeecccee-EEEeeeccccccccceeeeEEEEEcccccccccccCC
Confidence            467899999999999999999888888888888888865544 33322          2345667777654         


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR  119 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~  119 (181)
                        ...+|..+..|.-|++++..-.+.-+.+||+++.
T Consensus       518 ~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt~  553 (1062)
T KOG1912|consen  518 KPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKTL  553 (1062)
T ss_pred             CCCcCcceeeeecccCceEEEEecccchHHHhhccc
Confidence              3457889999999999999999999999998653

>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1

Probab=97.24  E-value=0.015  Score=44.68  Aligned_cols=124  Identities=19%  Similarity=0.274  Sum_probs=84.3

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeCCCC-----------Cc----
Q psy10953         33 GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDANTG-----------HS----   87 (181)
Q Consensus        33 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~~~~-----------~~----   87 (181)
                      +++.++|.++++++..+...  ..-.+..|||++.++++.          ..-.|.+||..+-           +.    
T Consensus        17 ~rv~viD~d~~k~lGmi~~g--~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R~~~~   94 (342)
T PF06433_consen   17 SRVYVIDADSGKLLGMIDTG--FLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPRAQVV   94 (342)
T ss_dssp             EEEEEEETTTTEEEEEEEEE--SSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B--BS
T ss_pred             ceEEEEECCCCcEEEEeecc--cCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcchheec
Confidence            47999999999988776542  222466899999887643          3457889998641           11    


Q ss_pred             ccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         88 SWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ......+++.+|++++...  .-..|.|.|+..++.+..+.-+++..-.-..+  +.|.+-|.||.+.-..+...
T Consensus        95 ~~~~~~~ls~dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~~~--~~F~~lC~DGsl~~v~Ld~~  167 (342)
T PF06433_consen   95 PYKNMFALSADGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPSGN--RGFSMLCGDGSLLTVTLDAD  167 (342)
T ss_dssp             --GGGEEE-TTSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEEET--TEEEEEETTSCEEEEEETST
T ss_pred             ccccceEEccCCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEecCC--CceEEEecCCceEEEEECCC
Confidence            1123467889998765544  45679999999998888888777654332222  45778888999999888743

4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=97.19  E-value=0.017  Score=45.25  Aligned_cols=143  Identities=16%  Similarity=0.183  Sum_probs=76.1

Q ss_pred             EEEcCCCCEEEEEe-CCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccE---
Q psy10953         17 VVFSPDDKYVLSGS-QSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWV---   90 (181)
Q Consensus        17 ~~~s~~g~~l~~~~-~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v---   90 (181)
                      =+|.+||+.|+.++ .|+  .+...|+.+++..++....+.......++++.+.++.......+.-.|+.+.+...|   
T Consensus        41 ~~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~  120 (386)
T PF14583_consen   41 NCFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEV  120 (386)
T ss_dssp             --B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE-
T ss_pred             CCcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEEC
Confidence            35788998776544 455  466778999999888765443333566789888888777677888889887654322   


Q ss_pred             -----EEEEE--cCCCCEEEEEeCC----------------------CcEEEEecCCCceeeeeecCCcEEEEEEccCCC
Q psy10953         91 -----LSTAF--TRDGKFFISASAD----------------------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGD  141 (181)
Q Consensus        91 -----~~~~~--s~~~~~l~~~~~d----------------------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~  141 (181)
                           ....|  +.++..++-....                      ..|.-.|+.+++....+.....+..+-|||..-
T Consensus       121 p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~v~~~~~wlgH~~fsP~dp  200 (386)
T PF14583_consen  121 PDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKVVFEDTDWLGHVQFSPTDP  200 (386)
T ss_dssp             -TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EEEEEEESS-EEEEEEETTEE
T ss_pred             CcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCceeEEEecCccccCcccCCCCC
Confidence                 22233  3445554332211                      134444566666554555556677888998766


Q ss_pred             EEEEEcCCC---c--EEEEeCCC
Q psy10953        142 KFVSVGEDK---A--VHMYSYKP  159 (181)
Q Consensus       142 ~l~~~~~d~---~--v~i~~~~~  159 (181)
                      .++.-+.+|   .  -+||-+.+
T Consensus       201 ~li~fCHEGpw~~Vd~RiW~i~~  223 (386)
T PF14583_consen  201 TLIMFCHEGPWDLVDQRIWTINT  223 (386)
T ss_dssp             EEEEEEE-S-TTTSS-SEEEEET
T ss_pred             CEEEEeccCCcceeceEEEEEEc
Confidence            666555433   2  36777654

>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases

Probab=97.16  E-value=0.067  Score=43.72  Aligned_cols=140  Identities=14%  Similarity=0.293  Sum_probs=84.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEEEecCCce--EEEEEECC--CCCEEEEee---------CCCcEEEEeCCCCCcccE
Q psy10953         24 KYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--TLSIAYST--DGHWIASGA---------LDGIINIFDANTGHSSWV   90 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~s~--d~~~l~~~~---------~d~~v~i~d~~~~~~~~v   90 (181)
                      ..++.++.++.|..+|.++|+.+-.+......  -..+.-+|  .+..++.++         .++.+.-+|+.+++..+.
T Consensus       111 ~~V~v~~~~g~v~AlD~~TG~~~W~~~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~  190 (488)
T cd00216         111 RKVFFGTFDGRLVALDAETGKQVWKFGNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWR  190 (488)
T ss_pred             CeEEEecCCCeEEEEECCCCCEeeeecCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeE
Confidence            67778888999999999999988665543321  00111111  123444443         356788888876653332


Q ss_pred             E-----------------------------EEEEcCCCCEEEEEeCCC------------------cEEEEecCCCceee
Q psy10953         91 L-----------------------------STAFTRDGKFFISASADH------------------TVRVWNFARRENMH  123 (181)
Q Consensus        91 ~-----------------------------~~~~s~~~~~l~~~~~d~------------------~i~v~d~~~~~~~~  123 (181)
                      .                             ..++++.+..++.++.++                  .+.-+|..+++...
T Consensus       191 ~~~~~~~~~~~~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W  270 (488)
T cd00216         191 FYTTEPDPNAFPTWGPDRQMWGPGGGTSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKW  270 (488)
T ss_pred             eeccCCCcCCCCCCCCCcceecCCCCCccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEE
Confidence            1                             123344455566666554                  68889999998887


Q ss_pred             eeecC-CcEEE------EEEc----cCCC---EEEEEcCCCcEEEEeCCCCeeE
Q psy10953        124 TFKHA-DQVWC------VCVA----PDGD---KFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       124 ~~~~~-~~v~~------~~~s----p~g~---~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      .++.. ...+.      ..+.    -+|.   .+++++.++.++..|..+|+++
T Consensus       271 ~~~~~~~~~~~~~~~s~p~~~~~~~~~g~~~~~V~~g~~~G~l~ald~~tG~~~  324 (488)
T cd00216         271 FYQTTPHDLWDYDGPNQPSLADIKPKDGKPVPAIVHAPKNGFFYVLDRTTGKLI  324 (488)
T ss_pred             EeeCCCCCCcccccCCCCeEEeccccCCCeeEEEEEECCCceEEEEECCCCcEe
Confidence            76521 11111      1111    1343   5777888899999999888765

The alignment model contains an 8-bladed beta-propeller.

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=97.16  E-value=0.0025  Score=34.41  Aligned_cols=35  Identities=23%  Similarity=0.265  Sum_probs=30.6

Q ss_pred             cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       127 ~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ....|.+++|+|....+|.+..+|.|.+|++ .+++
T Consensus        10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr   44 (47)
T PF12894_consen   10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR   44 (47)
T ss_pred             CCCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence            4567999999999999999999999999999 5544

>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=97.14  E-value=0.0011  Score=51.67  Aligned_cols=87  Identities=26%  Similarity=0.379  Sum_probs=58.4

Q ss_pred             cCCCCEEEEEe---------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC----
Q psy10953         20 SPDDKYVLSGS---------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH----   86 (181)
Q Consensus        20 s~~g~~l~~~~---------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~----   86 (181)
                      |||+++++...         ..+.+.++|+.+++...+... ........|||+|+.++... ++.+++++...+.    
T Consensus         1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~l   78 (353)
T PF00930_consen    1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQL   78 (353)
T ss_dssp             -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEES
T ss_pred             CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEe
Confidence            68999887643         245789999999887766544 23344789999999998776 5678888764321    


Q ss_pred             ---------------------cccEEEEEEcCCCCEEEEEeCC
Q psy10953         87 ---------------------SSWVLSTAFTRDGKFFISASAD  108 (181)
Q Consensus        87 ---------------------~~~v~~~~~s~~~~~l~~~~~d  108 (181)
                                           -..-.++.|||||++|+....|
T Consensus        79 T~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d  121 (353)
T PF00930_consen   79 TTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFD  121 (353)
T ss_dssp             ES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE
T ss_pred             ccccceeEEcCccceeccccccccccceEECCCCCEEEEEEEC
Confidence                                 0112457899999988866543

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....

>KOG2444|consensus

Probab=97.11  E-value=0.0029  Score=45.63  Aligned_cols=129  Identities=17%  Similarity=0.163  Sum_probs=77.4

Q ss_pred             EEeCCCcEEEEeCCCCcEEEEEecCCceEEE-EEECCCCCEEEEeeCCCcEEEEeCCC--CC--------cccEEEEEEc
Q psy10953         28 SGSQSGKINLYGVETGKLEQIFDTRGKFTLS-IAYSTDGHWIASGALDGIINIFDANT--GH--------SSWVLSTAFT   96 (181)
Q Consensus        28 ~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-~~~s~d~~~l~~~~~d~~v~i~d~~~--~~--------~~~v~~~~~s   96 (181)
                      ..+.|+.++-++++..+..-.-   ..++.+ ...-.-+..++.|+.+|.|++|....  .|        ......+.-.
T Consensus        35 ~~sa~~~v~~~~~~k~k~s~rs---e~~~~e~~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~  111 (238)
T KOG2444|consen   35 ATSADGLVRERKVRKHKESCRS---ERFIDEGQRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNG  111 (238)
T ss_pred             cccCCcccccchhhhhhhhhhh---hhhhhcceeecccCceEEeecccceEEEecCCccchHHHhhhcccccceeccccc
Confidence            4456777776666544332110   011111 11122346688899999999998752  12        1112223233


Q ss_pred             CCCCEEEEEeCCCcEEEEecCCCceeeeee-cC-CcEEEEEEccCCCEEEEE--cCCCcEEEEeCCC
Q psy10953         97 RDGKFFISASADHTVRVWNFARRENMHTFK-HA-DQVWCVCVAPDGDKFVSV--GEDKAVHMYSYKP  159 (181)
Q Consensus        97 ~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~-~~v~~~~~sp~g~~l~~~--~~d~~v~i~~~~~  159 (181)
                      .++.+..+++.++.|+-|+....+.+.... |. ..+..+..+-.+++++..  |.|..++.|++..
T Consensus       112 ~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~  178 (238)
T KOG2444|consen  112 RDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEK  178 (238)
T ss_pred             cccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhh
Confidence            345577788899999999998877665543 44 345555556667777777  7788888888754

>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []

Probab=97.10  E-value=0.068  Score=39.68  Aligned_cols=141  Identities=13%  Similarity=0.230  Sum_probs=79.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--c--E--EEEEe--c---CCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETG--K--L--EQIFD--T---RGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~--~--~--~~~~~--~---~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +.=.|++-.++.++++.-.++.+.++++...  .  .  .+.+.  .   .+.-...++|++.++.|+.+....-..+|.
T Consensus        66 D~EgI~y~g~~~~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~  145 (248)
T PF06977_consen   66 DYEGITYLGNGRYVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYE  145 (248)
T ss_dssp             SEEEEEE-STTEEEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEE
T ss_pred             CceeEEEECCCEEEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEE
Confidence            3446677767777776666888988887322  1  1  11222  1   123357899999988888887766656665


Q ss_pred             CCC--C-----------------CcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeecC----------CcE
Q psy10953         82 ANT--G-----------------HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFKHA----------DQV  131 (181)
Q Consensus        82 ~~~--~-----------------~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----------~~v  131 (181)
                      +..  .                 ....+.+++++|. +++++-+..+..+..+| ..++....+...          ...
T Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~Qp  224 (248)
T PF06977_consen  146 VNGFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQP  224 (248)
T ss_dssp             EESTT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SE
T ss_pred             EccccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCc
Confidence            432  1                 1223567889986 45666677788898998 555555544321          247


Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEE
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      -+++|.++|+.+++ ++-+..+++
T Consensus       225 EGIa~d~~G~LYIv-sEpNlfy~f  247 (248)
T PF06977_consen  225 EGIAFDPDGNLYIV-SEPNLFYRF  247 (248)
T ss_dssp             EEEEE-TT--EEEE-ETTTEEEEE
T ss_pred             cEEEECCCCCEEEE-cCCceEEEe
Confidence            79999999966664 455555554

Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.

>PRK13616 lipoprotein LpqB; Provisional

Probab=97.05  E-value=0.014  Score=48.66  Aligned_cols=97  Identities=10%  Similarity=-0.014  Sum_probs=58.9

Q ss_pred             eEEEEEECCCCCEEEEee------CCC--cEEEEeCCCCCc-----ccEEEEEEcCCCCEEEEEeCC------------C
Q psy10953         55 FTLSIAYSTDGHWIASGA------LDG--IINIFDANTGHS-----SWVLSTAFTRDGKFFISASAD------------H  109 (181)
Q Consensus        55 ~~~~~~~s~d~~~l~~~~------~d~--~v~i~d~~~~~~-----~~v~~~~~s~~~~~l~~~~~d------------~  109 (181)
                      .+...+++|||+.++...      .|.  .+.+++....+.     .......|+|+|+.+.+....            +
T Consensus       351 ~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~g  430 (591)
T PRK13616        351 NITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVAVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDPATG  430 (591)
T ss_pred             CcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcceeeecCCCCCCceECCCCCceEEEecCcceEEEeccCCCc
Confidence            345788999999887654      243  444445422111     124567899998877766533            2


Q ss_pred             cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953        110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus       110 ~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      .+++.++..+....  .....|..+++||||.+++... ++.|++
T Consensus       431 ql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~V  472 (591)
T PRK13616        431 QLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYL  472 (591)
T ss_pred             eEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEE
Confidence            23222333222211  2245699999999999988766 467766

>KOG4649|consensus

Probab=97.04  E-value=0.077  Score=39.43  Aligned_cols=117  Identities=20%  Similarity=0.206  Sum_probs=80.7

Q ss_pred             cCCC-CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccE--------
Q psy10953         20 SPDD-KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWV--------   90 (181)
Q Consensus        20 s~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v--------   90 (181)
                      -+|. .+++.|+..+.+.-.|.++|+++-.... +..+.+-+.- -|..++.|...|.+++.+.+++...+-        
T Consensus        19 ~~dskT~v~igSHs~~~~avd~~sG~~~We~il-g~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk   96 (354)
T KOG4649|consen   19 CNDSKTLVVIGSHSGIVIAVDPQSGNLIWEAIL-GVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVK   96 (354)
T ss_pred             ecCCceEEEEecCCceEEEecCCCCcEEeehhh-CceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhc
Confidence            3443 4567888999999999999987643222 2222221111 467788999999999999988754321        


Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCc-EEEEEEcc
Q psy10953         91 LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-VWCVCVAP  138 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-v~~~~~sp  138 (181)
                      ...+..+++.++-+++.|++.+..|.++...+...+-.+. ..+-++.|
T Consensus        97 ~~a~~d~~~glIycgshd~~~yalD~~~~~cVykskcgG~~f~sP~i~~  145 (354)
T KOG4649|consen   97 VRAQCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSKCGGGTFVSPVIAP  145 (354)
T ss_pred             cceEEcCCCceEEEecCCCcEEEecccccceEEecccCCceeccceecC
Confidence            1346788999999999999999999999887766553332 22344555

>KOG2395|consensus

Probab=97.03  E-value=0.022  Score=46.03  Aligned_cols=128  Identities=15%  Similarity=0.207  Sum_probs=82.8

Q ss_pred             EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC--E-----EEEeeCCCcEEEEeCCCCCcc---------c-
Q psy10953         27 LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH--W-----IASGALDGIINIFDANTGHSS---------W-   89 (181)
Q Consensus        27 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~--~-----l~~~~~d~~v~i~d~~~~~~~---------~-   89 (181)
                      .++..-..++=.|++.|+++..+..+.. +.-+.+.|+.+  .     -+.|-.|+.|.-||.+..-..         + 
T Consensus       350 ~~~~~~~~l~klDIE~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~  428 (644)
T KOG2395|consen  350 MDGGEQDKLYKLDIERGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYS  428 (644)
T ss_pred             eCCCCcCcceeeecccceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccc
Confidence            3555556788889999999988777666 33456666543  1     245677889999998732211         0 


Q ss_pred             ----EEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         90 ----VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        90 ----v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                          -.+.+-..+ -+++.|+.+|.|++||--....-..++ ...+|..+..+.+|+.|++.+ +..+.+.+.
T Consensus       429 ~k~nFsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  429 TKNNFSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cccccceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence                112222222 367889999999999863222112233 556899999999999998766 455655554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.00  E-value=0.043  Score=44.20  Aligned_cols=55  Identities=29%  Similarity=0.328  Sum_probs=27.4

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      |.+|...+.+ .|.+||..+++.+..+....  +..+.|+++|.+++..+.+ .+++++
T Consensus       117 G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~~--vk~V~Ws~~g~~val~t~~-~i~il~  171 (443)
T PF04053_consen  117 GNLLGVKSSD-FICFYDWETGKLIRRIDVSA--VKYVIWSDDGELVALVTKD-SIYILK  171 (443)
T ss_dssp             SSSEEEEETT-EEEEE-TTT--EEEEESS-E---EEEEE-TTSSEEEEE-S--SEEEEE
T ss_pred             CcEEEEECCC-CEEEEEhhHcceeeEEecCC--CcEEEEECCCCEEEEEeCC-eEEEEE
Confidence            5555555433 67777777777666665332  3456677777766655544 445544

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]

Probab=96.94  E-value=0.1  Score=40.02  Aligned_cols=136  Identities=18%  Similarity=0.292  Sum_probs=77.0

Q ss_pred             EcCCCCE-EEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC------------CC
Q psy10953         19 FSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN------------TG   85 (181)
Q Consensus        19 ~s~~g~~-l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~------------~~   85 (181)
                      |.++.+. +++--..+.|.-|+..+++... +...+...........+.++++...   +.+++..            .+
T Consensus        32 w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-~~~p~~~~~~~~~d~~g~Lv~~~~g---~~~~~~~~~~~~t~~~~~~~~  107 (307)
T COG3386          32 WDPDRGALLWVDILGGRIHRLDPETGKKRV-FPSPGGFSSGALIDAGGRLIACEHG---VRLLDPDTGGKITLLAEPEDG  107 (307)
T ss_pred             CcCCCCEEEEEeCCCCeEEEecCCcCceEE-EECCCCcccceeecCCCeEEEEccc---cEEEeccCCceeEEeccccCC
Confidence            5666664 4455566778888877665433 3333333333455555554433221   2223322            11


Q ss_pred             -CcccEEEEEEcCCCCEEEEEeC-----------CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcC-CCc
Q psy10953         86 -HSSWVLSTAFTRDGKFFISASA-----------DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE-DKA  151 (181)
Q Consensus        86 -~~~~v~~~~~s~~~~~l~~~~~-----------d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~-d~~  151 (181)
                       .....+.....|+|.+.++-..           -|.++.+|. .+....... +-...+++|||||++.++.+-. .+.
T Consensus       108 ~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~  186 (307)
T COG3386         108 LPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANR  186 (307)
T ss_pred             CCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCCe
Confidence             1234567788999997765444           134555554 333333332 2345678999999988776665 578


Q ss_pred             EEEEeCCC
Q psy10953        152 VHMYSYKP  159 (181)
Q Consensus       152 v~i~~~~~  159 (181)
                      |+-|++..
T Consensus       187 i~r~~~d~  194 (307)
T COG3386         187 IHRYDLDP  194 (307)
T ss_pred             EEEEecCc
Confidence            88888763

>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain

Probab=96.93  E-value=0.0037  Score=33.77  Aligned_cols=31  Identities=16%  Similarity=0.447  Sum_probs=27.9

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVE   41 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~   41 (181)
                      +..+..++|+|...++|.+..+|.|.++.+.
T Consensus        11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~   41 (47)
T PF12894_consen   11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN   41 (47)
T ss_pred             CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence            4457899999999999999999999999983

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=96.92  E-value=0.04  Score=46.05  Aligned_cols=108  Identities=13%  Similarity=0.181  Sum_probs=70.9

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEE--EECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSI--AYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~--~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+-....-+.-|.-++..++-+.-.++.+||.+.+.+...... ....+..+  ...|||+.+++.+..+.|.+|...
T Consensus        25 ~~T~i~~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~  104 (631)
T PF12234_consen   25 FETGISNPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQL  104 (631)
T ss_pred             EecCCCCcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEcc
Confidence            334444444555566666555555566899999998886643332 23445555  447899999999999999998542


Q ss_pred             C-------------------CC-cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         84 T-------------------GH-SSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        84 ~-------------------~~-~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                      .                   .+ ...|.+..|.++|.+++.++  ..+.|+|-
T Consensus       105 R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk  155 (631)
T PF12234_consen  105 RYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK  155 (631)
T ss_pred             chhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence            1                   11 13567788999999876554  56777763

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>KOG4499|consensus

Probab=96.83  E-value=0.11  Score=38.00  Aligned_cols=81  Identities=16%  Similarity=0.223  Sum_probs=57.8

Q ss_pred             EEEEECCCCCEEEEe-eCCCcEEEEe--CCCCC-----------------cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         57 LSIAYSTDGHWIASG-ALDGIINIFD--ANTGH-----------------SSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        57 ~~~~~s~d~~~l~~~-~~d~~v~i~d--~~~~~-----------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                      ..+.|+.|.+.+..- +.+-.|.-||  ..++.                 ....-.++++-+|++.+++-..++|..+|+
T Consensus       161 Ngl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp  240 (310)
T KOG4499|consen  161 NGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVDP  240 (310)
T ss_pred             ccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEECC
Confidence            367888888877765 4455665566  32221                 111223455667888888999999999999


Q ss_pred             CCCceeeeee-cCCcEEEEEEc
Q psy10953        117 ARRENMHTFK-HADQVWCVCVA  137 (181)
Q Consensus       117 ~~~~~~~~~~-~~~~v~~~~~s  137 (181)
                      .+++.+.++. ....++++||-
T Consensus       241 ~tGK~L~eiklPt~qitsccFg  262 (310)
T KOG4499|consen  241 TTGKILLEIKLPTPQITSCCFG  262 (310)
T ss_pred             CCCcEEEEEEcCCCceEEEEec
Confidence            9999999887 45679999995

>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region

Probab=96.76  E-value=0.067  Score=34.40  Aligned_cols=91  Identities=22%  Similarity=0.239  Sum_probs=60.3

Q ss_pred             EECCCC-CEEEEeeCCCcEEEEeCCC-----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE
Q psy10953         60 AYSTDG-HWIASGALDGIINIFDANT-----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC  133 (181)
Q Consensus        60 ~~s~d~-~~l~~~~~d~~v~i~d~~~-----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~  133 (181)
                      .|..|| +.|++|+.|..|++|+-..     .+...|..+.-... ..++.+..+|+|-+|+-  ...+...+....+.+
T Consensus         9 d~d~dg~~eLlvGs~D~~IRvf~~~e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~--~~RlWRiKSK~~~~~   85 (111)
T PF14783_consen    9 DFDGDGENELLVGSDDFEIRVFKGDEIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDR--SQRLWRIKSKNQVTS   85 (111)
T ss_pred             ecCCCCcceEEEecCCcEEEEEeCCcEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeC--cceeeeeccCCCeEE
Confidence            344454 5688999999999998642     34556777765555 55788899999999975  334455554445666


Q ss_pred             EEEcc---CCC-EEEEEcCCCcEE
Q psy10953        134 VCVAP---DGD-KFVSVGEDKAVH  153 (181)
Q Consensus       134 ~~~sp---~g~-~l~~~~~d~~v~  153 (181)
                      +++..   ||. -|++|=.+|.|-
T Consensus        86 ~~~~D~~gdG~~eLI~GwsnGkve  109 (111)
T PF14783_consen   86 MAFYDINGDGVPELIVGWSNGKVE  109 (111)
T ss_pred             EEEEcCCCCCceEEEEEecCCeEE
Confidence            65432   232 477777777764

>KOG2079|consensus

Probab=96.66  E-value=0.094  Score=45.89  Aligned_cols=67  Identities=13%  Similarity=0.352  Sum_probs=52.3

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE---EEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT---LSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~---~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .|.+++|+.||+.++.|-.+|.|.+||+..++.++.+..++...   ..+.+..++..++++..-|.  +|.
T Consensus       132 ~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  132 PVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence            47899999999999999999999999999999988877655433   33455556666777777775  454

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=96.61  E-value=0.18  Score=37.48  Aligned_cols=134  Identities=16%  Similarity=0.092  Sum_probs=81.7

Q ss_pred             eEEEEEEcCCCCEEEEEe---CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe-CCCC---
Q psy10953         13 DMWNVVFSPDDKYVLSGS---QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD-ANTG---   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~---~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d-~~~~---   85 (181)
                      .+...++|++|+.++...   ....++++..  +....... .+......+|++++...+....+....++. ...+   
T Consensus        25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~--~~~~~~~~-~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~  101 (253)
T PF10647_consen   25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPA--GGPVRPVL-TGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGE  101 (253)
T ss_pred             cccceEECCCCCeEEEEEEcCCCCEEEEEcC--CCcceeec-cCCccccccccCCCCEEEEEcCCCceEEEEecCCCcce
Confidence            578899999999887655   2334555543  33222221 233445789999987776666565555552 2111   


Q ss_pred             -------Ccc-cEEEEEEcCCCCEEEEEe---CCCcEEEEecCC---C--cee----eee-ecCCcEEEEEEccCCCEEE
Q psy10953         86 -------HSS-WVLSTAFTRDGKFFISAS---ADHTVRVWNFAR---R--ENM----HTF-KHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        86 -------~~~-~v~~~~~s~~~~~l~~~~---~d~~i~v~d~~~---~--~~~----~~~-~~~~~v~~~~~sp~g~~l~  144 (181)
                             ... .|..+.+||||..++...   .++.+++--+..   +  ..+    ... .....+..++|.+++.+++
T Consensus       102 ~~~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V  181 (253)
T PF10647_consen  102 PVEVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVV  181 (253)
T ss_pred             eEEecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEE
Confidence                   112 789999999998766555   346677665432   2  111    111 1235688999999998887


Q ss_pred             EEcCC
Q psy10953        145 SVGED  149 (181)
Q Consensus       145 ~~~~d  149 (181)
                      .+...
T Consensus       182 ~~~~~  186 (253)
T PF10647_consen  182 LGRSA  186 (253)
T ss_pred             EeCCC
Confidence            77654

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>PHA02713 hypothetical protein; Provisional

Probab=96.59  E-value=0.051  Score=45.19  Aligned_cols=137  Identities=12%  Similarity=0.133  Sum_probs=72.7

Q ss_pred             CCCCEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCce-EEEEEECCCCCEEEEeeCCC-------------------
Q psy10953         21 PDDKYVLSGSQSG-----KINLYGVETGKLEQIFDTRGKF-TLSIAYSTDGHWIASGALDG-------------------   75 (181)
Q Consensus        21 ~~g~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~d~-------------------   75 (181)
                      -+|++.+.||.++     ++..||..+++....-...... ..++. .-+|+..+.|+.++                   
T Consensus       350 ~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~  428 (557)
T PHA02713        350 IDDTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDT  428 (557)
T ss_pred             ECCEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccc
Confidence            3677778888654     4778888776544321111111 01111 23577777776542                   


Q ss_pred             ----cEEEEeCCCCC--------cccEEEEEEcCCCCEEEEEeCC------CcEEEEecCC-C--ceeeeeecC-CcEEE
Q psy10953         76 ----IINIFDANTGH--------SSWVLSTAFTRDGKFFISASAD------HTVRVWNFAR-R--ENMHTFKHA-DQVWC  133 (181)
Q Consensus        76 ----~v~i~d~~~~~--------~~~v~~~~~s~~~~~l~~~~~d------~~i~v~d~~~-~--~~~~~~~~~-~~v~~  133 (181)
                          .+..||+.+..        ..........-+++..+.|+.+      ..+..||..+ .  ..+..++.+ .....
T Consensus       429 ~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~  508 (557)
T PHA02713        429 HSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHT  508 (557)
T ss_pred             cccceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccccccee
Confidence                46678876431        1111111223356777777654      2367788876 3  233333321 12222


Q ss_pred             EEEccCCCEEEEEcCCC--cEEEEeCCCC
Q psy10953        134 VCVAPDGDKFVSVGEDK--AVHMYSYKPE  160 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~--~v~i~~~~~~  160 (181)
                      ++  -+|+.+++|+.++  .+..||..+.
T Consensus       509 ~~--~~~~iyv~Gg~~~~~~~e~yd~~~~  535 (557)
T PHA02713        509 IL--HDNTIMMLHCYESYMLQDTFNVYTY  535 (557)
T ss_pred             EE--ECCEEEEEeeecceeehhhcCcccc
Confidence            22  2788888888877  6777776554

>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A

Probab=96.51  E-value=0.29  Score=38.56  Aligned_cols=144  Identities=18%  Similarity=0.266  Sum_probs=67.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCC-----cEEEE--eCCCCcEEEEEec-CCceEEEEEECCCCCEEEEee-----CCCcEEEE
Q psy10953         14 MWNVVFSPDDKYVLSGSQSG-----KINLY--GVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGA-----LDGIINIF   80 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~-----~i~~~--d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~-----~d~~v~i~   80 (181)
                      .-.+-|||..-.++.-|..|     .-|||  +........+... .+..+--=.|+|||..+..-+     .+..+.-+
T Consensus       190 lgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg~~~~~v~~~~~~e~~gHEfw~~DG~~i~y~~~~~~~~~~~i~~~  269 (386)
T PF14583_consen  190 LGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDGSNVKKVHRRMEGESVGHEFWVPDGSTIWYDSYTPGGQDFWIAGY  269 (386)
T ss_dssp             EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS---EESS---TTEEEEEEEE-TTSS-EEEEEEETTT--EEEEEE
T ss_pred             ccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCCCcceeeecCCCCcccccccccCCCCEEEEEeecCCCCceEEEee
Confidence            34577888655555444332     23455  4444443333222 222222347899998776532     24566677


Q ss_pred             eCCCCCcc------cEEEEEEcCCCCEEEEEeCC----------------CcEEEEecCCCceeeeeecC----------
Q psy10953         81 DANTGHSS------WVLSTAFTRDGKFFISASAD----------------HTVRVWNFARRENMHTFKHA----------  128 (181)
Q Consensus        81 d~~~~~~~------~v~~~~~s~~~~~l~~~~~d----------------~~i~v~d~~~~~~~~~~~~~----------  128 (181)
                      |+.++...      +.....-+++|++++-=+.|                -.|+++++..+.......|.          
T Consensus       270 d~~t~~~~~~~~~p~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~~~~~~~~l~~h~~sw~v~~~~~  349 (386)
T PF14583_consen  270 DPDTGERRRLMEMPWCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDVEAGRFRKLARHDTSWKVLDGDR  349 (386)
T ss_dssp             -TTT--EEEEEEE-SEEEEEE-TTSSEEEEEE-------------------EEEEEETTTTEEEEEEE-------BTTBS
T ss_pred             CCCCCCceEEEeCCceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEeccccCceeeeeeccCcceeecCCC
Confidence            77765432      23345567889987643332                15667777665432221121          


Q ss_pred             -CcEEEEEEccCCCEEEEEc-CCCcEEEEeC
Q psy10953        129 -DQVWCVCVAPDGDKFVSVG-EDKAVHMYSY  157 (181)
Q Consensus       129 -~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~  157 (181)
                       ..-....|||||+.++-.| .+|...||-.
T Consensus       350 q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v  380 (386)
T PF14583_consen  350 QVTHPHPSFSPDGKWVLFRSDMEGPPAVYLV  380 (386)
T ss_dssp             STT----EE-TTSSEEEEEE-TTSS-EEEEE
T ss_pred             ccCCCCCccCCCCCEEEEECCCCCCccEEEE
Confidence             1134689999999976666 4676666644

>KOG1832|consensus

Probab=96.51  E-value=0.0043  Score=52.97  Aligned_cols=104  Identities=20%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCC--cEEEEecCC-Cceeee
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADH--TVRVWNFAR-RENMHT  124 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~--~i~v~d~~~-~~~~~~  124 (181)
                      -.+++|+-+.++|+.|+..|.+++|++.+        +|...++.+.-+.+|..+++.+.-.  ...+|++.. +...++
T Consensus      1104 fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~~Hs 1183 (1516)
T KOG1832|consen 1104 FTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGPRHS 1183 (1516)
T ss_pred             eeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccccccCcccc
Confidence            35899999999999999999999999864        4777888888888998776665433  467998865 233333


Q ss_pred             eecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        125 FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       125 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      +.   .-.++.|+..-+.-+.|.....+.+||+.++.+
T Consensus      1184 f~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~ 1218 (1516)
T KOG1832|consen 1184 FD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSP 1218 (1516)
T ss_pred             cc---ccceeehhhhHHHHHhcccccceEEEecccCcH
Confidence            33   334667776655555566667889999877644

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=96.36  E-value=0.47  Score=39.30  Aligned_cols=147  Identities=17%  Similarity=0.327  Sum_probs=88.6

Q ss_pred             EEEcCCCCEEEEEeC-----CC-----------cEEEEeCCCCcEEEEEecCCceE---------EEEEECCCCC---EE
Q psy10953         17 VVFSPDDKYVLSGSQ-----SG-----------KINLYGVETGKLEQIFDTRGKFT---------LSIAYSTDGH---WI   68 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~-----d~-----------~i~~~d~~~~~~~~~~~~~~~~~---------~~~~~s~d~~---~l   68 (181)
                      +++.|.-.++..+..     .+           .|.-.|++||++.-.++...+.+         .-+.+..+|+   .+
T Consensus       239 ~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v  318 (527)
T TIGR03075       239 GSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLL  318 (527)
T ss_pred             eeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEE
Confidence            466666666654431     12           57788999999987666522111         1233335776   66


Q ss_pred             EEeeCCCcEEEEeCCCCCc----------ccE---------------------------------------EEEEEcCCC
Q psy10953         69 ASGALDGIINIFDANTGHS----------SWV---------------------------------------LSTAFTRDG   99 (181)
Q Consensus        69 ~~~~~d~~v~i~d~~~~~~----------~~v---------------------------------------~~~~~s~~~   99 (181)
                      +.+..+|.+++.|.++++.          .+.                                       ..++++|+.
T Consensus       319 ~~~~K~G~~~vlDr~tG~~i~~~~~~~~~~w~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~Pg~~Gg~~W~~~A~Dp~~  398 (527)
T TIGR03075       319 AHADRNGFFYVLDRTNGKLLSAEPFVDTVNWATGVDLKTGRPIEVPEARSADGKKGKPVGVCPGFLGGKNWQPMAYSPKT  398 (527)
T ss_pred             EEeCCCceEEEEECCCCceeccccccCCcccccccCCCCCCCccChhhCcCCCCCCCeeEECCCCcCCCCCCCceECCCC
Confidence            7899999999999876532          010                                       014566655


Q ss_pred             CEEEEEeCC---------------------------------CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEE
Q psy10953        100 KFFISASAD---------------------------------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus       100 ~~l~~~~~d---------------------------------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  146 (181)
                      .++.....+                                 +.+.=+|+.+++.....+...+...-.+.-.+..++.+
T Consensus       399 g~~yvp~~~~~~~~~~~~~~~~~g~~~~~~~~~~~p~~~~~~g~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g  478 (527)
T TIGR03075       399 GLFYVPANEVCMDYEPEKVSYKKGAAYLGAGLTIKPPPDDHMGSLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYG  478 (527)
T ss_pred             CEEEEecccccccccccccccCCCCceeccccccCCCCCCCceeEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEE
Confidence            444322222                                 34666777777766665533322211122245677778


Q ss_pred             cCCCcEEEEeCCCCeeE
Q psy10953        147 GEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~~~  163 (181)
                      ..++.++.+|.++|+++
T Consensus       479 ~~~G~l~a~D~~TGe~l  495 (527)
T TIGR03075       479 TLEGYFKAFDAKTGEEL  495 (527)
T ss_pred             CCCCeEEEEECCCCCEe
Confidence            88999999999999876

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=96.30  E-value=0.078  Score=38.62  Aligned_cols=35  Identities=11%  Similarity=0.123  Sum_probs=23.0

Q ss_pred             CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       129 ~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ..|..+.++.+|.-+++-+ ++..+.|+...+.=++
T Consensus        67 ~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L~~W~~  101 (219)
T PF07569_consen   67 PNITSCSLTSNGVPIVTLS-NGDSYSYSPDLGCWIR  101 (219)
T ss_pred             CcEEEEEEcCCCCEEEEEe-CCCEEEeccccceeEE
Confidence            4577777887777766655 4677888765544333

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.26  E-value=0.34  Score=36.65  Aligned_cols=152  Identities=10%  Similarity=0.128  Sum_probs=92.4

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIASGALDGIINIFDANTG-   85 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-   85 (181)
                      +.....++++.|+|+.+.|++..+...-.++=...|+++..+...+. ....+.+..+|++.++--.++.++++.+... 
T Consensus        82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t  161 (316)
T COG3204          82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADT  161 (316)
T ss_pred             ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCc
Confidence            33444589999999999998888777777776678888876654321 1134566666665555555666666544211 


Q ss_pred             ----------------C-cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc-ee--eeee--------cCCcEEEEEEc
Q psy10953         86 ----------------H-SSWVLSTAFTRDGKFFISASADHTVRVWNFARRE-NM--HTFK--------HADQVWCVCVA  137 (181)
Q Consensus        86 ----------------~-~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~--~~~~--------~~~~v~~~~~s  137 (181)
                                      + +..-..++|+|..+.|..+=...-+.||...... .+  +...        .-..+.++.|.
T Consensus       162 ~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~  241 (316)
T COG3204         162 TVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLEFN  241 (316)
T ss_pred             cEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccceec
Confidence                            1 2334578999988766666666667777654322 11  0000        11246678888


Q ss_pred             cCCCE-EEEEcCCCcEEEEeCCC
Q psy10953        138 PDGDK-FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       138 p~g~~-l~~~~~d~~v~i~~~~~  159 (181)
                      +..+. ++.+.+++.+.-.+...
T Consensus       242 ~~~~~LLVLS~ESr~l~Evd~~G  264 (316)
T COG3204         242 AITNSLLVLSDESRRLLEVDLSG  264 (316)
T ss_pred             CCCCcEEEEecCCceEEEEecCC
Confidence            75544 55555566666666643

>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.13  E-value=0.4  Score=36.26  Aligned_cols=132  Identities=15%  Similarity=0.247  Sum_probs=76.8

Q ss_pred             EEEEEcCCCCE-EEEEeCCC-cEEEEeCCCCcEEEEEecCCceE-EE-EEECCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy10953         15 WNVVFSPDDKY-VLSGSQSG-KINLYGVETGKLEQIFDTRGKFT-LS-IAYSTDGHWIASGALD-----GIINIFDANTG   85 (181)
Q Consensus        15 ~~~~~s~~g~~-l~~~~~d~-~i~~~d~~~~~~~~~~~~~~~~~-~~-~~~s~d~~~l~~~~~d-----~~v~i~d~~~~   85 (181)
                      ..++|+|.-.+ ++.+=.=| ...++|..+.+..+.+....... +. -.|||||.+|+..-+|     |.+=+||.+.+
T Consensus        71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~  150 (366)
T COG3490          71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG  150 (366)
T ss_pred             CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence            44555554433 22332223 35677777776655554322211 11 3689999999875433     67889998632


Q ss_pred             ---------CcccEEEEEEcCCCCEEEEEeCC------------------CcEEEEecCCCceeeeee-----cCCcEEE
Q psy10953         86 ---------HSSWVLSTAFTRDGKFFISASAD------------------HTVRVWNFARRENMHTFK-----HADQVWC  133 (181)
Q Consensus        86 ---------~~~~v~~~~~s~~~~~l~~~~~d------------------~~i~v~d~~~~~~~~~~~-----~~~~v~~  133 (181)
                               |.-....+.|.+||+.++.+.-.                  -++.+.|..++..+.+..     +...+..
T Consensus       151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpdfgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRH  230 (366)
T COG3490         151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPDFGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRH  230 (366)
T ss_pred             cceecccccCCcCcceeEEecCCcEEEEeCCceecccccCccccchhhcCccEEEEeccccchhhhccCchhhhhcceee
Confidence                     22334668899999988765431                  134444545555443332     2346888


Q ss_pred             EEEccCCCEEEEE
Q psy10953        134 VCVAPDGDKFVSV  146 (181)
Q Consensus       134 ~~~sp~g~~l~~~  146 (181)
                      +++.+||+..+.+
T Consensus       231 ld~g~dgtvwfgc  243 (366)
T COG3490         231 LDIGRDGTVWFGC  243 (366)
T ss_pred             eeeCCCCcEEEEE
Confidence            8998888766543

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=96.11  E-value=0.53  Score=37.49  Aligned_cols=160  Identities=19%  Similarity=0.250  Sum_probs=90.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC--------CceEEEEEEC-----CCC---C
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR--------GKFTLSIAYS-----TDG---H   66 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~s-----~d~---~   66 (181)
                      ++..++.....+..++.| |=.+++.|..+|++.+.|++...++..-...        ...+.++.|+     .|+   -
T Consensus        78 P~~l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi  156 (395)
T PF08596_consen   78 PLTLLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSI  156 (395)
T ss_dssp             EEEEE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred             chhheeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccce
Confidence            456666777788999997 6678999999999999999887776542221        2234455554     344   4


Q ss_pred             EEEEeeCCCcEEEEeCCC---------------CCcccEEEEE-EcCC-----------------C---CEEEEEeCCCc
Q psy10953         67 WIASGALDGIINIFDANT---------------GHSSWVLSTA-FTRD-----------------G---KFFISASADHT  110 (181)
Q Consensus        67 ~l~~~~~d~~v~i~d~~~---------------~~~~~v~~~~-~s~~-----------------~---~~l~~~~~d~~  110 (181)
                      .+++|...|.+.+|.+..               .+...+..+. |+.+                 |   ..++....+..
T Consensus       157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~  236 (395)
T PF08596_consen  157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESD  236 (395)
T ss_dssp             EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSE
T ss_pred             EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccc
Confidence            577888889999997641               1222222221 2111                 1   12334444678


Q ss_pred             EEEEecCCCceeeeeecC-CcEEEEEEc-----cCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        111 VRVWNFARRENMHTFKHA-DQVWCVCVA-----PDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       111 i~v~d~~~~~~~~~~~~~-~~v~~~~~s-----p~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ++++.+.+.+..+..... -....+++-     ..+..|++-..+|.+++|.+..=+++
T Consensus       237 irv~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei  295 (395)
T PF08596_consen  237 IRVFKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEI  295 (395)
T ss_dssp             EEEE-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EE
T ss_pred             eEEEeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHh
Confidence            999988876655544311 123334442     35667888889999999999664444

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins

Probab=96.11  E-value=0.025  Score=48.43  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=50.5

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ......+++-+.+| +||+|+.+|.||+||--..+-...+..-+.++..+..+.||+|+++.. +.-+.+++.
T Consensus       576 ~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g~~AKT~lp~lG~pI~~iDvt~DGkwilaTc-~tyLlLi~t  646 (794)
T PF08553_consen  576 SKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLGKRAKTALPGLGDPIIGIDVTADGKWILATC-KTYLLLIDT  646 (794)
T ss_pred             cCCCceEEEecCCc-eEEEEeCCCcEEeecccchhhhhcCCCCCCCeeEEEecCCCcEEEEee-cceEEEEEE
Confidence            33445677777666 588999999999999543333355666688889999999999988554 444555553

Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=96.09  E-value=0.2  Score=39.99  Aligned_cols=49  Identities=12%  Similarity=0.207  Sum_probs=39.4

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK   54 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~   54 (181)
                      .+....-....+..+|++++.|+...-|.|.++|+.++..++.+..-.+
T Consensus       302 ~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRd  350 (415)
T PF14655_consen  302 GLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRD  350 (415)
T ss_pred             eeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCcc
Confidence            3444555678899999999999988889999999999998887765433

>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=95.92  E-value=0.31  Score=38.75  Aligned_cols=103  Identities=20%  Similarity=0.261  Sum_probs=65.5

Q ss_pred             EEEECCCCCEEEEe-eCCC----cEEEEeCCCCCcc-----cE--EEEEEcCCCCEEEEEeCCC-----------cEEEE
Q psy10953         58 SIAYSTDGHWIASG-ALDG----IINIFDANTGHSS-----WV--LSTAFTRDGKFFISASADH-----------TVRVW  114 (181)
Q Consensus        58 ~~~~s~d~~~l~~~-~~d~----~v~i~d~~~~~~~-----~v--~~~~~s~~~~~l~~~~~d~-----------~i~v~  114 (181)
                      .+.+||||++++.+ +..|    .++++|+.++...     .+  ..+.|.++++.|+....+.           .|+.|
T Consensus       128 ~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~  207 (414)
T PF02897_consen  128 GFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRH  207 (414)
T ss_dssp             EEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEEEE
T ss_pred             eeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEEEE
Confidence            57899999998865 3333    5999999887421     11  2389999998766655333           37777


Q ss_pred             ecCCCcee--eeee--cCCc-EEEEEEccCCCEEEEEcC---C-CcEEEEeCCCC
Q psy10953        115 NFARRENM--HTFK--HADQ-VWCVCVAPDGDKFVSVGE---D-KAVHMYSYKPE  160 (181)
Q Consensus       115 d~~~~~~~--~~~~--~~~~-v~~~~~sp~g~~l~~~~~---d-~~v~i~~~~~~  160 (181)
                      .+.+...-  ..+.  .... ...+..++|+++++..+.   + ..+++.+...+
T Consensus       208 ~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~  262 (414)
T PF02897_consen  208 KLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG  262 (414)
T ss_dssp             ETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred             ECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence            77665322  2332  2233 568889999999765442   2 45777777653

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....

>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family

Probab=95.82  E-value=0.8  Score=37.14  Aligned_cols=62  Identities=23%  Similarity=0.383  Sum_probs=40.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE------ec-CCceEEEEEECCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF------DT-RGKFTLSIAYSTDG   65 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~------~~-~~~~~~~~~~s~d~   65 (181)
                      +..+.......|.|+|.|||++|++--..|+|++++-.++......      .. ...-...++++|+-
T Consensus        22 ~~~va~GL~~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF   90 (454)
T TIGR03606        22 KKVLLSGLNKPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF   90 (454)
T ss_pred             EEEEECCCCCceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence            3445556666799999999987776654699999976554322211      11 12224588999874

PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.

>KOG2079|consensus

Probab=95.77  E-value=0.035  Score=48.36  Aligned_cols=97  Identities=15%  Similarity=0.273  Sum_probs=67.0

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      .++....+..++.|+..|.+...|..++ +-+..+.  .+..+.+++|+.+|..++.|-.+|.|.+||...+.       
T Consensus        92 v~s~a~~~~~ivi~Ts~ghvl~~d~~~n-L~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e  170 (1206)
T KOG2079|consen   92 VISSAIVVVPIVIGTSHGHVLLSDMTGN-LGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITE  170 (1206)
T ss_pred             eeeeeeeeeeEEEEcCchhhhhhhhhcc-cchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeee
Confidence            3444446667888998899998887643 2221221  23457799999999999999999999999986532       


Q ss_pred             ----cccEEEEEEcCCCCEEEEEeCCCcEEEEe
Q psy10953         87 ----SSWVLSTAFTRDGKFFISASADHTVRVWN  115 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~~l~~~~~d~~i~v~d  115 (181)
                          ...+..+.+..++..++++...|.  +|.
T Consensus       171 ~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~  201 (1206)
T KOG2079|consen  171 HGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWK  201 (1206)
T ss_pred             cCCccceEEEEEEeCCCcEEEEccCCCc--eEE
Confidence                123444555666667888887776  554

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=95.73  E-value=0.83  Score=36.65  Aligned_cols=134  Identities=17%  Similarity=0.257  Sum_probs=69.1

Q ss_pred             EEEEEEcCCCCEEEEEeC--------------------CCcEEEEeCCCCcEEEEEecCC--ceEEEEEE--CCCCCEEE
Q psy10953         14 MWNVVFSPDDKYVLSGSQ--------------------SGKINLYGVETGKLEQIFDTRG--KFTLSIAY--STDGHWIA   69 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~--------------------d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~--s~d~~~l~   69 (181)
                      -+++-+.|..+.++|+..                    -.++.+||..+.+.++.+..-.  .....+.|  .|+..+=+
T Consensus       183 gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gF  262 (461)
T PF05694_consen  183 GYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGF  262 (461)
T ss_dssp             ---EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEE
T ss_pred             CCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceE
Confidence            467778888888887753                    2479999999999999887642  23334554  55555433


Q ss_pred             E-eeCCCcEEEEeC-CCC---------------------C--------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecC
Q psy10953         70 S-GALDGIINIFDA-NTG---------------------H--------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFA  117 (181)
Q Consensus        70 ~-~~~d~~v~i~d~-~~~---------------------~--------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~  117 (181)
                      + +.-.++|..|-. ..+                     .        ..-|+.+-+|.|.++| +++..+|.++.||+.
T Consensus       263 vg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDIS  342 (461)
T PF05694_consen  263 VGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDIS  342 (461)
T ss_dssp             EEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-S
T ss_pred             EEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecC
Confidence            3 233333433321 110                     0        1346788999999965 556679999999997


Q ss_pred             CCce---eeeeec-----------------CCcEEEEEEccCCCEEEEEc
Q psy10953        118 RREN---MHTFKH-----------------ADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       118 ~~~~---~~~~~~-----------------~~~v~~~~~sp~g~~l~~~~  147 (181)
                      ....   +.+...                 .+...-+.+|.||++++...
T Consensus       343 DP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvqlS~DGkRlYvTn  392 (461)
T PF05694_consen  343 DPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQLSLDGKRLYVTN  392 (461)
T ss_dssp             STTS-EEEEEEE-BTTTT-B--TTS------S----EEE-TTSSEEEEE-
T ss_pred             CCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEEEccCCeEEEEEe
Confidence            6432   222211                 12235577899999886654

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=95.66  E-value=0.63  Score=34.80  Aligned_cols=129  Identities=16%  Similarity=0.238  Sum_probs=76.9

Q ss_pred             EEEEEec-CCceEEEEEECCCCCEEEEeeCCC--cEEEEeCCCCCcccE---------EEEEEcCCCCEEEEEeCCCcEE
Q psy10953         45 LEQIFDT-RGKFTLSIAYSTDGHWIASGALDG--IINIFDANTGHSSWV---------LSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        45 ~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~--~v~i~d~~~~~~~~v---------~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                      ++..+.+ ...+..++.|..+|..+-+.+.-|  .++.+|+.++.....         ..++.. +++...-...++...
T Consensus        35 vv~~ypHd~~aFTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-~d~l~qLTWk~~~~f  113 (264)
T PF05096_consen   35 VVETYPHDPTAFTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-GDKLYQLTWKEGTGF  113 (264)
T ss_dssp             EEEEEE--TT-EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-TTEEEEEESSSSEEE
T ss_pred             EEEECCCCCcccCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-CCEEEEEEecCCeEE
Confidence            4455554 345667888877887777766554  678888887642211         112222 234444556789999


Q ss_pred             EEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe---eEEEcCCCCcchhhh
Q psy10953        113 VWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE---EVEVNGGGGEEEEEE  176 (181)
Q Consensus       113 v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~---~~~~~~~~~~~~~~~  176 (181)
                      +||..+.+.+.++..++.=|+++  .||+.|+.......++.+|..+..   .+.+...+..-...|
T Consensus       114 ~yd~~tl~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LN  178 (264)
T PF05096_consen  114 VYDPNTLKKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLN  178 (264)
T ss_dssp             EEETTTTEEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EE
T ss_pred             EEccccceEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcE
Confidence            99999999999999888999998  467777766667788888876553   334444443333333

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation

Probab=95.58  E-value=0.67  Score=34.51  Aligned_cols=102  Identities=20%  Similarity=0.159  Sum_probs=62.7

Q ss_pred             EEEEEECCCCCEEEEee---CCCcEEEEeCCCC-----CcccEEEEEEcCCCCEEEEEeCCCcEEEEe-cCCCce-eeee
Q psy10953         56 TLSIAYSTDGHWIASGA---LDGIINIFDANTG-----HSSWVLSTAFTRDGKFFISASADHTVRVWN-FARREN-MHTF  125 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~---~d~~v~i~d~~~~-----~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d-~~~~~~-~~~~  125 (181)
                      ..+.++++|++.++...   ....++++.....     .........|++++...+....+...+++. ...+.. ....
T Consensus        26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~v  105 (253)
T PF10647_consen   26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVEV  105 (253)
T ss_pred             ccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEEe
Confidence            45789999998877655   2334444443221     112456678999988777666666666663 333321 1222


Q ss_pred             e--c-CCcEEEEEEccCCCEEEEEcC---CCcEEEEeC
Q psy10953        126 K--H-ADQVWCVCVAPDGDKFVSVGE---DKAVHMYSY  157 (181)
Q Consensus       126 ~--~-~~~v~~~~~sp~g~~l~~~~~---d~~v~i~~~  157 (181)
                      .  . ...|..+++||||.+++....   ++.|.+-.+
T Consensus       106 ~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V  143 (253)
T PF10647_consen  106 DWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV  143 (253)
T ss_pred             cccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence            2  1 127999999999999877662   456666543

It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.

>KOG2247|consensus

Probab=95.57  E-value=0.0029  Score=50.55  Aligned_cols=132  Identities=14%  Similarity=0.227  Sum_probs=91.8

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCc-------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDANTGHS-------   87 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~~-------   87 (181)
                      ...|-|.+.-++.++.+..+..||-. ++........+.. ..++|+.+|..++ .+...+-+.+||+.+...       
T Consensus        39 ~~~w~~e~~nlavaca~tiv~~YD~a-gq~~le~n~tg~a-ldm~wDkegdvlavlAek~~piylwd~n~eytqqLE~gg  116 (615)
T KOG2247|consen   39 IHRWRPEGHNLAVACANTIVIYYDKA-GQVILELNPTGKA-LDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQQLESGG  116 (615)
T ss_pred             eeeEecCCCceehhhhhhHHHhhhhh-cceecccCCchhH-hhhhhccccchhhhhhhcCCCeeechhhhhhHHHHhccC
Confidence            45678888889999889899999854 3333333333443 3788988886655 467788999999865321       


Q ss_pred             -ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         88 -SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        88 -~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                       ..-.-+.|++.+..++.+...+.+.+++..+.+...... |..++..+++.+.+..+. ++.|.
T Consensus       117 ~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vil-~dcd~  180 (615)
T KOG2247|consen  117 TSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVIL-CDCDN  180 (615)
T ss_pred             cchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceeee-cCcHH
Confidence             111226788988888888889999999988765444443 777888999988875444 44443

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=95.47  E-value=0.84  Score=34.99  Aligned_cols=140  Identities=15%  Similarity=0.234  Sum_probs=71.2

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC-C-------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA-N-------   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~-~-------   83 (181)
                      ..+.++.-++||++++++..-....-||--.......-......+..+.|+|++.... ....+.++.=+. .       
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~-~~~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWM-LARGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEE-EETTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEE-EeCCcEEEEccCCCCcccccc
Confidence            3467788899999888876444445665432222232223456677899999987654 336777776651 1       


Q ss_pred             ----CCCccc-EEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee----ecCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 ----TGHSSW-VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF----KHADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ----~~~~~~-v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                          .....+ +..++|.++++..++++.. .+ +.....++.=...    ..+..++.+.|.++.+-++ .+.+|-+--
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G-~l-~~S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~-lG~~G~ll~  300 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSG-TL-LVSTDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFV-LGQDGVLLR  300 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEESTT--E-EEESSTTSS-EE-GGGTTSSS---EEEEEETTEEEE-E-STTEEEE
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCCc-cE-EEeCCCCccceECccccCCCCceEEEEEcCCCceEE-ECCCcEEEE
Confidence                011222 7889999998888877644 33 2333333322221    1245688888887655565 455666654


Q ss_pred             E
Q psy10953        155 Y  155 (181)
Q Consensus       155 ~  155 (181)
                      |
T Consensus       301 ~  301 (302)
T PF14870_consen  301 Y  301 (302)
T ss_dssp             E
T ss_pred             e
Confidence            4

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=95.47  E-value=0.69  Score=39.74  Aligned_cols=74  Identities=8%  Similarity=0.150  Sum_probs=42.8

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--C--------cE-E--EEE-------e-cCCceEEEEEECCC---C
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--G--------KL-E--QIF-------D-TRGKFTLSIAYSTD---G   65 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~--------~~-~--~~~-------~-~~~~~~~~~~~s~d---~   65 (181)
                      ....|..|.++|+|++++..|..+ |.+..+..  |        +. +  +.+       . .....+..+.|+|.   +
T Consensus        83 ~~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~  161 (717)
T PF10168_consen   83 PLFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESD  161 (717)
T ss_pred             CceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCC
Confidence            335678899999999999888754 44443421  1        11 0  000       0 11223456677664   3


Q ss_pred             CEEEEeeCCCcEEEEeCCC
Q psy10953         66 HWIASGALDGIINIFDANT   84 (181)
Q Consensus        66 ~~l~~~~~d~~v~i~d~~~   84 (181)
                      .+|+.-.+|+.+++||+..
T Consensus       162 ~~l~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  162 SHLVVLTSDNTLRLYDISD  180 (717)
T ss_pred             CeEEEEecCCEEEEEecCC
Confidence            5666666677777777653

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide

Probab=95.46  E-value=0.08  Score=26.96  Aligned_cols=34  Identities=29%  Similarity=0.559  Sum_probs=21.9

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeC-C--CcEEEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQ-S--GKINLY   38 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~-d--~~i~~~   38 (181)
                      .+++..+..-...+|||||++|+.++. +  |.-.||
T Consensus         2 ~~~t~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy   38 (39)
T PF07676_consen    2 KQLTNSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY   38 (39)
T ss_dssp             EEES-SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred             cCcccCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence            455666667789999999999876554 3  444444

WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....

>PHA02713 hypothetical protein; Provisional

Probab=95.45  E-value=0.84  Score=38.11  Aligned_cols=138  Identities=12%  Similarity=0.135  Sum_probs=68.0

Q ss_pred             CCCCEEEEEeCC------CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCC---
Q psy10953         21 PDDKYVLSGSQS------GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG-----IINIFDANTGH---   86 (181)
Q Consensus        21 ~~g~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~-----~v~i~d~~~~~---   86 (181)
                      -++...+.||.+      ..+..||..+++....-.............-+|+..+.|+.++     .+..||..+..   
T Consensus       302 l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~  381 (557)
T PHA02713        302 VDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLAVIDDTIYAIGGQNGTNVERTIECYTMGDDKWKM  381 (557)
T ss_pred             ECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEEEECCEEEEECCcCCCCCCceEEEEECCCCeEEE
Confidence            366777777753      2477788877654322111111100111233677777787653     47788876431   


Q ss_pred             ----c-ccEEEEEEcCCCCEEEEEeCCC-----------------------cEEEEecCCCc--eeeeeecCCcEEEEEE
Q psy10953         87 ----S-SWVLSTAFTRDGKFFISASADH-----------------------TVRVWNFARRE--NMHTFKHADQVWCVCV  136 (181)
Q Consensus        87 ----~-~~v~~~~~s~~~~~l~~~~~d~-----------------------~i~v~d~~~~~--~~~~~~~~~~v~~~~~  136 (181)
                          . ......+..-+|+.++.|+.++                       .+..||..+.+  .+...... .....+.
T Consensus       382 ~~~mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~-r~~~~~~  460 (557)
T PHA02713        382 LPDMPIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTG-TIRPGVV  460 (557)
T ss_pred             CCCCCcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcc-cccCcEE
Confidence                0 0000111123677777777542                       36677776542  22222111 1111222


Q ss_pred             ccCCCEEEEEcCCC------cEEEEeCCC
Q psy10953        137 APDGDKFVSVGEDK------AVHMYSYKP  159 (181)
Q Consensus       137 sp~g~~l~~~~~d~------~v~i~~~~~  159 (181)
                      .-+|+.++.|+.++      .+..||..+
T Consensus       461 ~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~  489 (557)
T PHA02713        461 SHKDDIYVVCDIKDEKNVKTCIFRYNTNT  489 (557)
T ss_pred             EECCEEEEEeCCCCCCccceeEEEecCCC
Confidence            33677777777542      355676654

>PHA03098 kelch-like protein; Provisional

Probab=95.40  E-value=0.8  Score=37.82  Aligned_cols=137  Identities=12%  Similarity=0.227  Sum_probs=68.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCC------CcEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS-----GKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALD------GIINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d------~~v~i~d~~~~~---   86 (181)
                      +++..+.||.+     ..+..||..+++....-... .....+++ .-+++..+.|+.+      +.+..||+.+..   
T Consensus       342 ~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~-~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~  420 (534)
T PHA03098        342 NNRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVV-NVNNLIYVIGGISKNDELLKTVECFSLNTNKWSK  420 (534)
T ss_pred             CCEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEE-EECCEEEEECCcCCCCcccceEEEEeCCCCeeee
Confidence            67777777765     34777887776644321111 11111122 2356666666632      457788876421   


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeCCC--------cEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC--
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASADH--------TVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED--  149 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~d~--------~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--  149 (181)
                           ...-...+...+++.++.|+.+.        .+.+||..+.+  .+.....+ .....+..-+++.++.|+.+  
T Consensus       421 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-r~~~~~~~~~~~iyv~GG~~~~  499 (534)
T PHA03098        421 GSPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFP-RINASLCIFNNKIYVVGGDKYE  499 (534)
T ss_pred             cCCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcc-cccceEEEECCEEEEEcCCcCC
Confidence                 00001112234566667776431        37888877643  22112111 11111122367777777754  


Q ss_pred             ---CcEEEEeCCCC
Q psy10953        150 ---KAVHMYSYKPE  160 (181)
Q Consensus       150 ---~~v~i~~~~~~  160 (181)
                         +.+.+||..+.
T Consensus       500 ~~~~~v~~yd~~~~  513 (534)
T PHA03098        500 YYINEIEVYDDKTN  513 (534)
T ss_pred             cccceeEEEeCCCC
Confidence               46788887654

>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length

Probab=95.31  E-value=1.5  Score=37.00  Aligned_cols=95  Identities=16%  Similarity=0.232  Sum_probs=62.4

Q ss_pred             CCCCCEEEEeeCCCcEEEEeCCCC---------CcccEEEEEEc--CCCCEEEEEeCCCcEEEEecCC---------Cce
Q psy10953         62 STDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFT--RDGKFFISASADHTVRVWNFAR---------REN  121 (181)
Q Consensus        62 s~d~~~l~~~~~d~~v~i~d~~~~---------~~~~v~~~~~s--~~~~~l~~~~~d~~i~v~d~~~---------~~~  121 (181)
                      |.-++.-++-+....++|||.+.+         +...|.++.|.  |+|+.+++.+..+.|.+|--..         ...
T Consensus        38 ss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~  117 (631)
T PF12234_consen   38 SSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAP  117 (631)
T ss_pred             cccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccce
Confidence            334444444444568999998753         24567777665  6899999999999999995321         122


Q ss_pred             eeeee---c-CCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        122 MHTFK---H-ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       122 ~~~~~---~-~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +..+.   + +.+|.+.+|.++|..++.++  +.+.+++-.
T Consensus       118 i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk~  156 (631)
T PF12234_consen  118 IRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDKW  156 (631)
T ss_pred             eEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECCC
Confidence            33331   2 24688899999997666444  678887754

This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.30  E-value=0.13  Score=27.10  Aligned_cols=29  Identities=14%  Similarity=0.356  Sum_probs=24.9

Q ss_pred             EEEEEEcCCCC---EEEEEeCCCcEEEEeCCC
Q psy10953         14 MWNVVFSPDDK---YVLSGSQSGKINLYGVET   42 (181)
Q Consensus        14 ~~~~~~s~~g~---~l~~~~~d~~i~~~d~~~   42 (181)
                      ++++.|||+..   +|+.+-.-+.|.++|+++
T Consensus         3 vR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    3 VRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             eEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            68999998554   888888889999999985

It contains a characteristic DLL sequence motif.

>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals

Probab=95.30  E-value=0.85  Score=36.36  Aligned_cols=140  Identities=15%  Similarity=0.186  Sum_probs=76.2

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC------CCCEEEEee-------CCCc--
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST------DGHWIASGA-------LDGI--   76 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~------d~~~l~~~~-------~d~~--   76 (181)
                      ..+..++|+++..-|++|...|.|.+|....++...  ...........+.+      .++ |.-.+       .+|.  
T Consensus         2 ~~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~di~~r~~~~~~~gf~P   78 (395)
T PF08596_consen    2 VSVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYG--NREQPPDLDYNFRRFSLNNSPGK-LTDISDRAPPSLKEGFLP   78 (395)
T ss_dssp             --EEEEEEETTTTEEEEEETTS-EEEEEEEE--------------------S--GGGSS-S-EEE-GGG--TT-SEEEEE
T ss_pred             ceEEEEEecCCCceEEEEccCCcEEEEEcccCCCCC--ccCCCcccCcccccccccCCCcc-eEEehhhCCcccccccCc
Confidence            357889999999999999999999999776544332  00000000111111      111 11100       0111  


Q ss_pred             EEEEeCCCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---------cCCcEEEEEEcc-----CC--
Q psy10953         77 INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---------HADQVWCVCVAP-----DG--  140 (181)
Q Consensus        77 v~i~d~~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~v~~~~~sp-----~g--  140 (181)
                      ..+++.   ..+.|.+++.| |=-+++.|..+|.+.|.|++....+..-.         ....+.++.|+-     |+  
T Consensus        79 ~~l~~~---~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~yS  154 (395)
T PF08596_consen   79 LTLLDA---KQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYS  154 (395)
T ss_dssp             EEEE------S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSE
T ss_pred             hhheec---cCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCccc
Confidence            112222   25678888876 44578889999999999998877665532         123467777762     33  


Q ss_pred             -CEEEEEcCCCcEEEEeCC
Q psy10953        141 -DKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       141 -~~l~~~~~d~~v~i~~~~  158 (181)
                       =.+++|...|.+.+|.+.
T Consensus       155 Si~L~vGTn~G~v~~fkIl  173 (395)
T PF08596_consen  155 SICLLVGTNSGNVLTFKIL  173 (395)
T ss_dssp             EEEEEEEETTSEEEEEEEE
T ss_pred             ceEEEEEeCCCCEEEEEEe
Confidence             257777888999999875

The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.

>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase

Probab=95.25  E-value=0.3  Score=36.46  Aligned_cols=95  Identities=16%  Similarity=0.290  Sum_probs=60.2

Q ss_pred             CCCCEEEEeeCCCcEEEEeCCC-C------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee------------
Q psy10953         63 TDGHWIASGALDGIINIFDANT-G------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH------------  123 (181)
Q Consensus        63 ~d~~~l~~~~~d~~v~i~d~~~-~------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~------------  123 (181)
                      ..++.|+.|..+| +++++... .      +...|..+...|+-+.+++-+ |+.++++++.......            
T Consensus         5 ~~~~~L~vGt~~G-l~~~~~~~~~~~~~i~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~   82 (275)
T PF00780_consen    5 SWGDRLLVGTEDG-LYVYDLSDPSKPTRILKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRS   82 (275)
T ss_pred             cCCCEEEEEECCC-EEEEEecCCccceeEeecceEEEEEEecccCEEEEEc-CCccEEEEchhhcccccccccccccccc
Confidence            3578889998888 88888821 1      233488888888877776665 5999999987543222            


Q ss_pred             ---eeecCCcEEEEE--EccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        124 ---TFKHADQVWCVC--VAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       124 ---~~~~~~~v~~~~--~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                         .......+...+  -.+.+....++...+.|.+|.+..
T Consensus        83 ~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~  123 (275)
T PF00780_consen   83 LPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWND  123 (275)
T ss_pred             ccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEEC
Confidence               112223344444  223444555555566888888755

These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity

>PRK10115 protease 2; Provisional

Probab=95.23  E-value=1.7  Score=37.23  Aligned_cols=102  Identities=13%  Similarity=0.053  Sum_probs=61.8

Q ss_pred             eEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC------CcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD------GIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d------~~v~i~d   81 (181)
                      .+..+.+||||++|+.+.+.     .+|++.|+.+++.+........  ..++|++|++.|+....+      ..|+.++
T Consensus       128 ~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~--~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~  205 (686)
T PRK10115        128 TLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVE--PSFVWANDSWTFYYVRKHPVTLLPYQVWRHT  205 (686)
T ss_pred             EEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcc--eEEEEeeCCCEEEEEEecCCCCCCCEEEEEE
Confidence            35667899999999865432     3688999988874322111111  358999999887765432      3677777


Q ss_pred             CCCCC--c--------ccE-EEEEEcCCCCEEEEEeC---CCcEEEEec
Q psy10953         82 ANTGH--S--------SWV-LSTAFTRDGKFFISASA---DHTVRVWNF  116 (181)
Q Consensus        82 ~~~~~--~--------~~v-~~~~~s~~~~~l~~~~~---d~~i~v~d~  116 (181)
                      +.++.  .        ... .....+.++++++..+.   +..+.+++.
T Consensus       206 lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        206 IGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             CCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            76541  1        111 13334547776554333   356888884

>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins

Probab=95.22  E-value=0.14  Score=26.99  Aligned_cols=30  Identities=17%  Similarity=0.212  Sum_probs=21.4

Q ss_pred             cEEEEEEcCC-C--CEEEEEeCCCcEEEEecCC
Q psy10953         89 WVLSTAFTRD-G--KFFISASADHTVRVWNFAR  118 (181)
Q Consensus        89 ~v~~~~~s~~-~--~~l~~~~~d~~i~v~d~~~  118 (181)
                      .++++.|||. +  .+|+.+...+.+.++|+++
T Consensus         2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~   34 (43)
T PF10313_consen    2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS   34 (43)
T ss_pred             CeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence            4667778864 3  4777777777888888774

It contains a characteristic DLL sequence motif.

>KOG3630|consensus

Probab=95.19  E-value=0.46  Score=42.24  Aligned_cols=101  Identities=12%  Similarity=0.031  Sum_probs=67.0

Q ss_pred             EEEECCCCCEEEEe--eCCCcEEEEeCCCCC-------------------cccEEEEEEcCCCC-EEEEEeCCCcEEEEe
Q psy10953         58 SIAYSTDGHWIASG--ALDGIINIFDANTGH-------------------SSWVLSTAFTRDGK-FFISASADHTVRVWN  115 (181)
Q Consensus        58 ~~~~s~d~~~l~~~--~~d~~v~i~d~~~~~-------------------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d  115 (181)
                      .+...+|+...++.  +.+-.|+.||++.-.                   .....++.|.|.-- ..+.+..|+.|++.-
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~  184 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS  184 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence            45556677655543  334488899986321                   12345667887642 345566788888876


Q ss_pred             cCCCceee-eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        116 FARRENMH-TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       116 ~~~~~~~~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +......+ .++.....++++|+|.|+.++.|-.+|++.-|...
T Consensus       185 ~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~  228 (1405)
T KOG3630|consen  185 TKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPS  228 (1405)
T ss_pred             hhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecc
Confidence            65433222 34566778999999999999999999988776653

>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit

Probab=95.07  E-value=1.2  Score=34.30  Aligned_cols=132  Identities=16%  Similarity=0.303  Sum_probs=79.4

Q ss_pred             CCEEEEEeC----------CCcEEEEeCCCC-----cEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953         23 DKYVLSGSQ----------SGKINLYGVETG-----KLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus        23 g~~l~~~~~----------d~~i~~~d~~~~-----~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      ..+++.|..          .|.|.++++...     ++...... ....+.+++-- .++ |+++. .+.+.+|++....
T Consensus        42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~~-lv~~~-g~~l~v~~l~~~~  118 (321)
T PF03178_consen   42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NGR-LVVAV-GNKLYVYDLDNSK  118 (321)
T ss_dssp             SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TTE-EEEEE-TTEEEEEEEETTS
T ss_pred             cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CCE-EEEee-cCEEEEEEccCcc
Confidence            467776653          288999999874     33322221 13335555433 344 54444 4789999886544


Q ss_pred             -c---------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-Cceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         87 -S---------SWVLSTAFTRDGKFFISASADHTVRVWNFAR-RENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        87 -~---------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                       -         ..+.++  ...+++++.+...+.+.++.... ...+..+.   .+..+.++.+-++++.++++..+|.+
T Consensus       119 ~l~~~~~~~~~~~i~sl--~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl  196 (321)
T PF03178_consen  119 TLLKKAFYDSPFYITSL--SVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNL  196 (321)
T ss_dssp             SEEEEEEE-BSSSEEEE--EEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEE
T ss_pred             cchhhheecceEEEEEE--eccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeE
Confidence             1         123333  33466899999988888886543 22233332   34457788887677788889999999


Q ss_pred             EEEeCCC
Q psy10953        153 HMYSYKP  159 (181)
Q Consensus       153 ~i~~~~~  159 (181)
                      .++...+
T Consensus       197 ~~l~~~~  203 (321)
T PF03178_consen  197 FVLRYNP  203 (321)
T ss_dssp             EEEEE-S
T ss_pred             EEEEECC
Confidence            9988864

CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....

>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]

Probab=95.06  E-value=0.096  Score=41.97  Aligned_cols=153  Identities=13%  Similarity=0.186  Sum_probs=87.8

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEEec-CCce---EE-EEEECCCCCEEEEeeCCCcE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE--QIFDT-RGKF---TL-SIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~--~~~~~-~~~~---~~-~~~~s~d~~~l~~~~~d~~v   77 (181)
                      ..+...+.++..+-..|||+.+..-+. .++.++++....+.  ...+. .++.   +. .+..-.-|..+..++.||.|
T Consensus       214 ~~L~~~~~~v~qllL~Pdg~~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~v  292 (733)
T COG4590         214 RLLSVPFSDVSQLLLTPDGKTLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLV  292 (733)
T ss_pred             hhcCCCccchHhhEECCCCCEEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCce
Confidence            335556667788889999999876654 67888877655432  12211 1211   10 11112235667888899988


Q ss_pred             EEE-eCCCC---CcccEEEEEEcCCC----------CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE
Q psy10953         78 NIF-DANTG---HSSWVLSTAFTRDG----------KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        78 ~i~-d~~~~---~~~~v~~~~~s~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l  143 (181)
                      .-| |.+.+   |-..++...+.|..          +-+++-...|++..+.....+.+-.......+..+++||++.++
T Consensus       293 sQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~~~~~~~~Sp~~~~L  372 (733)
T COG4590         293 SQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQAPQLVAMSPNQAYL  372 (733)
T ss_pred             eeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceehhhhhcCcceeeeCcccchh
Confidence            876 55432   33334444444332          34455555666666554433333222233356678999999888


Q ss_pred             EEEcCCCcEEEEeCCC
Q psy10953        144 VSVGEDKAVHMYSYKP  159 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~  159 (181)
                      ++-. .+.++++.+..
T Consensus       373 l~e~-~gki~~~~l~N  387 (733)
T COG4590         373 LSED-QGKIRLAQLEN  387 (733)
T ss_pred             eeec-CCceEEEEecC
Confidence            7543 46788877643

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=95.06  E-value=1.2  Score=34.51  Aligned_cols=95  Identities=22%  Similarity=0.312  Sum_probs=51.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE-e------cCCceEEEEEECCC----CCEEEEeeCC-------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-D------TRGKFTLSIAYSTD----GHWIASGALD-------   74 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~-~------~~~~~~~~~~~s~d----~~~l~~~~~d-------   74 (181)
                      ..+.|+|.|||+.+++ ...|+|++++ ..+.....+ .      ....-...++++|+    +...++....       
T Consensus         3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~-~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~   80 (331)
T PF07995_consen    3 NPRSMAFLPDGRLLVA-ERSGRIWVVD-KDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDN   80 (331)
T ss_dssp             SEEEEEEETTSCEEEE-ETTTEEEEEE-TTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSE
T ss_pred             CceEEEEeCCCcEEEE-eCCceEEEEe-CCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCc
Confidence            3589999999887664 5699999999 444431111 1      11223468899995    3333333311       


Q ss_pred             -CcEEEEeCCC-------------------CCcccEEEEEEcCCCCEEEEEeCCC
Q psy10953         75 -GIINIFDANT-------------------GHSSWVLSTAFTRDGKFFISASADH  109 (181)
Q Consensus        75 -~~v~i~d~~~-------------------~~~~~v~~~~~s~~~~~l~~~~~d~  109 (181)
                       ..|.-|....                   ........+.|.|+|.++++.+..+
T Consensus        81 ~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~  135 (331)
T PF07995_consen   81 DNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG  135 (331)
T ss_dssp             EEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred             ceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence             1232222211                   1112345689999998777766544

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.98  E-value=0.18  Score=25.83  Aligned_cols=41  Identities=22%  Similarity=0.243  Sum_probs=26.3

Q ss_pred             CCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCcEEEEEEc
Q psy10953         97 RDGKFFISAS-ADHTVRVWNFARRENMHTFKHADQVWCVCVA  137 (181)
Q Consensus        97 ~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s  137 (181)
                      |+++.|..+. .++.|.++|..+++.+..+.-....+.++|+
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~~   42 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAVS   42 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEeC
Confidence            5666544444 5778889998887777666654445555553

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PHA03098 kelch-like protein; Provisional

Probab=94.97  E-value=0.98  Score=37.31  Aligned_cols=137  Identities=9%  Similarity=0.113  Sum_probs=66.7

Q ss_pred             CCCCEEEEEeCCC------cEEEEeCCCCcEEEEEecCCce-EEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCC--
Q psy10953         21 PDDKYVLSGSQSG------KINLYGVETGKLEQIFDTRGKF-TLSIAYSTDGHWIASGALD-----GIINIFDANTGH--   86 (181)
Q Consensus        21 ~~g~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~d-----~~v~i~d~~~~~--   86 (181)
                      .++..++.|+.++      .+..||..+++....-...... ..++. .-+++.++.|+.+     ..+..||..+..  
T Consensus       293 ~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~  371 (534)
T PHA03098        293 LNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWR  371 (534)
T ss_pred             ECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCcee
Confidence            4666677776543      4677888777654322111111 01111 2256777777765     346677765421  


Q ss_pred             ------cccEEEEEEcCCCCEEEEEeCC------CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCCC--
Q psy10953         87 ------SSWVLSTAFTRDGKFFISASAD------HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGEDK--  150 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~~~d------~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~--  150 (181)
                            .......+..-+++.++.|+.+      ..+..||+.+.+  .....+.+ .....+...+++.++.||.+.  
T Consensus       372 ~~~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~-r~~~~~~~~~~~iyv~GG~~~~~  450 (534)
T PHA03098        372 EEPPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPIS-HYGGCAIYHDGKIYVIGGISYID  450 (534)
T ss_pred             eCCCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCcc-ccCceEEEECCEEEEECCccCCC
Confidence                  0001111122356777777632      357888876542  11111111 111122334566667676431  


Q ss_pred             ------cEEEEeCCC
Q psy10953        151 ------AVHMYSYKP  159 (181)
Q Consensus       151 ------~v~i~~~~~  159 (181)
                            .+.+||..+
T Consensus       451 ~~~~~~~v~~yd~~~  465 (534)
T PHA03098        451 NIKVYNIVESYNPVT  465 (534)
T ss_pred             CCcccceEEEecCCC
Confidence                  267777654

>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2

Probab=94.90  E-value=1.2  Score=33.44  Aligned_cols=147  Identities=17%  Similarity=0.108  Sum_probs=86.1

Q ss_pred             EEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcc----
Q psy10953         16 NVVFSPDDKYVLSGSQSG--KINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSS----   88 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~----   88 (181)
                      .+.|.++|.++-+.+.-|  .|+.+|+.+++........ ..+-..++...|.- ....=.++...+||..+-+..    
T Consensus        49 GL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d~l-~qLTWk~~~~f~yd~~tl~~~~~~~  127 (264)
T PF05096_consen   49 GLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGDKL-YQLTWKEGTGFVYDPNTLKKIGTFP  127 (264)
T ss_dssp             EEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETTEE-EEEESSSSEEEEEETTTTEEEEEEE
T ss_pred             cEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECCEE-EEEEecCCeEEEEccccceEEEEEe
Confidence            466767788777777666  6999999999988665543 23444555554322 222334778899998753211    


Q ss_pred             ---cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec------CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         89 ---WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH------ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        89 ---~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                         .=..+  ..+|+.|+.+.-...++++|..+.+....+.-      -..++.+.+- +|...|=.=....|...|..+
T Consensus       128 y~~EGWGL--t~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~t  204 (264)
T PF05096_consen  128 YPGEGWGL--TSDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPET  204 (264)
T ss_dssp             -SSS--EE--EECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT
T ss_pred             cCCcceEE--EcCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCC
Confidence               01122  25677777777778899999988776665531      1235566665 454444344556777778777


Q ss_pred             CeeEEEc
Q psy10953        160 EEEVEVN  166 (181)
Q Consensus       160 ~~~~~~~  166 (181)
                      |.-+...
T Consensus       205 G~V~~~i  211 (264)
T PF05096_consen  205 GKVVGWI  211 (264)
T ss_dssp             -BEEEEE
T ss_pred             CeEEEEE
Confidence            7665544

3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.

>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A

Probab=94.86  E-value=1.3  Score=33.91  Aligned_cols=95  Identities=15%  Similarity=0.247  Sum_probs=54.3

Q ss_pred             ceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-
Q psy10953         54 KFTLSIAYSTDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-  124 (181)
Q Consensus        54 ~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-  124 (181)
                      ..+..+.-++||+++++++.-....-||.-.        .....+..+.|+|++.+...+ ..+.+++=+......... 
T Consensus       145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~~  223 (302)
T PF14870_consen  145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWSE  223 (302)
T ss_dssp             --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE--
T ss_pred             ceeEeEEECCCCcEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCcccccc
Confidence            3355677899999888877666666777532        234679999999998876544 778888776222111111 


Q ss_pred             --ee---cCCcEEEEEEccCCCEEEEEcCC
Q psy10953        125 --FK---HADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus       125 --~~---~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                        .+   ..-.+..+++.++++..++|+..
T Consensus       224 ~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G  253 (302)
T PF14870_consen  224 PIIPIKTNGYGILDLAYRPPNEIWAVGGSG  253 (302)
T ss_dssp             -B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred             ccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence              11   11237889999998888877654

>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin

Probab=94.83  E-value=0.32  Score=35.43  Aligned_cols=28  Identities=21%  Similarity=0.449  Sum_probs=24.3

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCcEE
Q psy10953         19 FSPDDKYVLSGSQSGKINLYGVETGKLE   46 (181)
Q Consensus        19 ~s~~g~~l~~~~~d~~i~~~d~~~~~~~   46 (181)
                      +..++++|++-..+|.+++||+.+++..
T Consensus        18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~   45 (219)
T PF07569_consen   18 LECNGSYLLAITSSGLLYVWNLKKGKAV   45 (219)
T ss_pred             EEeCCCEEEEEeCCCeEEEEECCCCeec
Confidence            5668999999999999999999988753

These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat

Probab=94.80  E-value=0.24  Score=25.39  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=24.2

Q ss_pred             CCCCEEEEEe-CCCcEEEEeCCCCcEEEEEec
Q psy10953         21 PDDKYVLSGS-QSGKINLYGVETGKLEQIFDT   51 (181)
Q Consensus        21 ~~g~~l~~~~-~d~~i~~~d~~~~~~~~~~~~   51 (181)
                      |++++|++++ .+++|.++|..+++....+..
T Consensus         1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v   32 (42)
T TIGR02276         1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV   32 (42)
T ss_pred             CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence            6788777655 578999999998888776655

This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).

>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=94.57  E-value=1.9  Score=34.51  Aligned_cols=53  Identities=17%  Similarity=0.254  Sum_probs=35.9

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDG   65 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~   65 (181)
                      .+..+++||+|+++|.-..+|++.+.+..-.+....+... ......+.|.-+.
T Consensus       218 ~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~~~~~~~~p~~~~WCG~d  271 (410)
T PF04841_consen  218 PIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEFDTDSKSPPKQMAWCGND  271 (410)
T ss_pred             CeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEeecCcCCCCcEEEEECCC
Confidence            4678888999998888888888888877655555555443 1223466675544

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=94.48  E-value=0.94  Score=37.10  Aligned_cols=133  Identities=14%  Similarity=0.254  Sum_probs=83.1

Q ss_pred             CCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-------EEEEeeCCCcEEEEeCCCCC-------
Q psy10953         22 DDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-------WIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        22 ~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-------~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      |.++|+ .|+.-..++-.|++.|+++..+..+...  -+.+.|+.+       .-+.|-++..|.-.|++-.-       
T Consensus       478 dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e  555 (776)
T COG5167         478 DSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE  555 (776)
T ss_pred             CcceEEecCCCcccceeeecccceeeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence            444443 4555567777889999998888777664  367777532       22346667777777765321       


Q ss_pred             -cccEEEEEEcC----CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         87 -SSWVLSTAFTR----DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        87 -~~~v~~~~~s~----~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                       ..+...=.|+.    ..-+++.++..|.|++||--....-..++ ....|-.+..+.+|+++++.+. ..+.+-+.
T Consensus       556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~  631 (776)
T COG5167         556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV  631 (776)
T ss_pred             ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence             11222222333    23478999999999999853322212223 4567888889999999887774 46666665

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=94.35  E-value=0.52  Score=32.91  Aligned_cols=31  Identities=16%  Similarity=0.281  Sum_probs=24.7

Q ss_pred             ccEEEEEEcCCC------CEEEEEeCCCcEEEEecCC
Q psy10953         88 SWVLSTAFTRDG------KFFISASADHTVRVWNFAR  118 (181)
Q Consensus        88 ~~v~~~~~s~~~------~~l~~~~~d~~i~v~d~~~  118 (181)
                      ..+.+++|||.|      -+|++.+.++.+.+|....
T Consensus        86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~  122 (173)
T PF12657_consen   86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG  122 (173)
T ss_pred             ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence            478999999954      3688888999999997543

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PHA02790 Kelch-like protein; Provisional

Probab=94.07  E-value=2.8  Score=34.34  Aligned_cols=136  Identities=8%  Similarity=0.017  Sum_probs=66.3

Q ss_pred             CCCCEEEEEeCC--CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC---cEEEEeCCCCC-------c-
Q psy10953         21 PDDKYVLSGSQS--GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG---IINIFDANTGH-------S-   87 (181)
Q Consensus        21 ~~g~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~---~v~i~d~~~~~-------~-   87 (181)
                      -+|...+.|+.+  .++..||..+++....-.............-+|+..+.|+.++   .+..||+.+..       . 
T Consensus       317 ~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~  396 (480)
T PHA02790        317 ANNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYY  396 (480)
T ss_pred             ECCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCC
Confidence            467777777754  3577788766554332211111111111223577677776543   46678875421       0 


Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC-----CcEEEEeCCCC
Q psy10953         88 SWVLSTAFTRDGKFFISASADHTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED-----KAVHMYSYKPE  160 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----~~v~i~~~~~~  160 (181)
                      ..-...+..-+|+..+.|+   .+.+||..+.+  .+...+.+ ....-+.--+|+.++.||.+     ..+..||..++
T Consensus       397 ~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~-r~~~~~~v~~~~IYviGG~~~~~~~~~ve~Yd~~~~  472 (480)
T PHA02790        397 PHYKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYP-RDNPELIIVDNKLLLIGGFYRGSYIDTIEVYNNRTY  472 (480)
T ss_pred             ccccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCC-ccccEEEEECCEEEEECCcCCCcccceEEEEECCCC
Confidence            0001112234566666653   46778876542  22222211 11111223367778888754     34666666543

>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus

Probab=93.92  E-value=1.2  Score=35.68  Aligned_cols=78  Identities=14%  Similarity=0.098  Sum_probs=51.2

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCC--cEEEEEEccC----------------CCEEEE-EcC
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HAD--QVWCVCVAPD----------------GDKFVS-VGE  148 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~--~v~~~~~sp~----------------g~~l~~-~~~  148 (181)
                      .+..+..+|++++.++...-|.|.++|+.++..+..++ +.+  .-|--...+.                ..+|+. .-.
T Consensus       309 ~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l~LvIyapr  388 (415)
T PF14655_consen  309 EGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFALFLVIYAPR  388 (415)
T ss_pred             eEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceEEEEEEecc
Confidence            35678999999999888888999999998876555443 111  1111111111                123443 345


Q ss_pred             CCcEEEEeCCCCeeEEEc
Q psy10953        149 DKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~~~  166 (181)
                      .|.|.+|+++.|.++...
T Consensus       389 Rg~lEvW~~~~g~Rv~a~  406 (415)
T PF14655_consen  389 RGILEVWSMRQGPRVAAF  406 (415)
T ss_pred             CCeEEEEecCCCCEEEEE
Confidence            789999999999887643

>KOG4441|consensus

Probab=93.90  E-value=2.3  Score=35.68  Aligned_cols=136  Identities=19%  Similarity=0.289  Sum_probs=73.3

Q ss_pred             CCCEEEEEeCC-C-----cEEEEeCCCCcEEEEEecCCceE-EEEEECCCCCEEEEeeCCC-----cEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS-G-----KINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASGALDG-----IINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d-~-----~i~~~d~~~~~~~~~~~~~~~~~-~~~~~s~d~~~l~~~~~d~-----~v~i~d~~~~~---   86 (181)
                      +|...++|+.| +     ++..||..+++....-....... .+++ .-+|...+.|+.||     ++-.||..+..   
T Consensus       332 ~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~-~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~  410 (571)
T KOG4441|consen  332 NGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTKRSDFGVA-VLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTP  410 (571)
T ss_pred             CCEEEEEccccCCCcccceEEEecCCCCceeccCCccCccccceeE-EECCEEEEEeccccccccccEEEecCCCCcccc
Confidence            66778889888 3     57788888777544222221111 1111 23677788898886     46667765421   


Q ss_pred             ----cccEE-EEEEcCCCCEEEEEeCCC------cEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCCCc--
Q psy10953         87 ----SSWVL-STAFTRDGKFFISASADH------TVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGEDKA--  151 (181)
Q Consensus        87 ----~~~v~-~~~~s~~~~~l~~~~~d~------~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~--  151 (181)
                          ..... ...-.-+|+..+.|+.++      ++..||..+..  ........ +...-+..-++..++.||.|+.  
T Consensus       411 va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~-R~~~g~a~~~~~iYvvGG~~~~~~  489 (571)
T KOG4441|consen  411 VAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTR-RSGFGVAVLNGKIYVVGGFDGTSA  489 (571)
T ss_pred             cCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccc-cccceEEEECCEEEEECCccCCCc
Confidence                11111 122234678888888543      56777776543  11111111 1111122346777788886652  


Q ss_pred             ---EEEEeCCC
Q psy10953        152 ---VHMYSYKP  159 (181)
Q Consensus       152 ---v~i~~~~~  159 (181)
                         |..||..+
T Consensus       490 ~~~VE~ydp~~  500 (571)
T KOG4441|consen  490 LSSVERYDPET  500 (571)
T ss_pred             cceEEEEcCCC
Confidence               56666544

>COG4257 Vgb Streptogramin lyase [Defense mechanisms]

Probab=93.74  E-value=2.3  Score=32.20  Aligned_cols=144  Identities=18%  Similarity=0.245  Sum_probs=88.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---------   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---------   84 (181)
                      .+.++-+|||..-+++...+.|--.|-.+|+..+.--..+.....+...|||..-++=... .|.-.|.++         
T Consensus        64 p~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~~Witd~~~-aI~R~dpkt~evt~f~lp  142 (353)
T COG4257          64 PFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGSAWITDTGL-AIGRLDPKTLEVTRFPLP  142 (353)
T ss_pred             ccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCCeeEecCcc-eeEEecCcccceEEeecc
Confidence            3667888899888888888888888888888876544444444467778888654443222 233334322         


Q ss_pred             -CCc-ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         85 -GHS-SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        85 -~~~-~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                       .|. .-.....|++.|++.+++... .---.|..+ ..+..+.  .....+.+|..|||..-++.-.++.|...|-..+
T Consensus       143 ~~~a~~nlet~vfD~~G~lWFt~q~G-~yGrLdPa~-~~i~vfpaPqG~gpyGi~atpdGsvwyaslagnaiaridp~~~  220 (353)
T COG4257         143 LEHADANLETAVFDPWGNLWFTGQIG-AYGRLDPAR-NVISVFPAPQGGGPYGICATPDGSVWYASLAGNAIARIDPFAG  220 (353)
T ss_pred             cccCCCcccceeeCCCccEEEeeccc-cceecCccc-CceeeeccCCCCCCcceEECCCCcEEEEeccccceEEcccccC
Confidence             121 123456799999988887742 111111111 1233333  2345778899999998887666777776665544

>KOG2444|consensus

Probab=93.50  E-value=0.29  Score=35.62  Aligned_cols=73  Identities=12%  Similarity=0.093  Sum_probs=46.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeee---ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCC
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTF---KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGG  170 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~  170 (181)
                      -+..+++|+.+|.|++|+..........   ....-...+....++.+.++++.++.|+.|+..+...+...+...
T Consensus        69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~  144 (238)
T KOG2444|consen   69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHN  144 (238)
T ss_pred             cCceEEeecccceEEEecCCccchHHHhhhcccccceeccccccccceeEEeccCCceeeeccccCceeeeecccc
Confidence            3567889999999999987532111111   111111222223345567888889999999999888777666644

>KOG4441|consensus

Probab=93.47  E-value=2.9  Score=35.08  Aligned_cols=137  Identities=16%  Similarity=0.224  Sum_probs=73.4

Q ss_pred             cCCCCEEEEEeCCC------cEEEEeCCCCcEEEEEecCCce-EEEEEECCCCCEEEEeeCC------CcEEEEeCCCCC
Q psy10953         20 SPDDKYVLSGSQSG------KINLYGVETGKLEQIFDTRGKF-TLSIAYSTDGHWIASGALD------GIINIFDANTGH   86 (181)
Q Consensus        20 s~~g~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~d------~~v~i~d~~~~~   86 (181)
                      +..+.+++.|+.++      .+..||..+++........... ..+++.. ++...++|+.|      ..+..||.....
T Consensus       282 ~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~~ve~YD~~~~~  360 (571)
T KOG4441|consen  282 SVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-NGKLYVVGGYDSGSDRLSSVERYDPRTNQ  360 (571)
T ss_pred             CCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-CCEEEEEccccCCCcccceEEEecCCCCc
Confidence            33466677777763      5778888877554433322211 1233333 46777888888      356677776432


Q ss_pred             --------cccEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCCC-
Q psy10953         87 --------SSWVLSTAFTRDGKFFISASADH-----TVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGEDK-  150 (181)
Q Consensus        87 --------~~~v~~~~~s~~~~~l~~~~~d~-----~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~-  150 (181)
                              ......-.-.-+|...+.|+.||     ++-.||..+.+  .+..... ..-...+..-+|+..++||.++ 
T Consensus       361 W~~~a~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~-~r~~~gv~~~~g~iYi~GG~~~~  439 (571)
T KOG4441|consen  361 WTPVAPMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLT-RRSGHGVAVLGGKLYIIGGGDGS  439 (571)
T ss_pred             eeccCCccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccCCCCc-ceeeeEEEEECCEEEEEcCcCCC
Confidence                    00000001123577888888885     46677766543  1111111 1122223344788888888553 


Q ss_pred             -----cEEEEeCC
Q psy10953        151 -----AVHMYSYK  158 (181)
Q Consensus       151 -----~v~i~~~~  158 (181)
                           .+..||..
T Consensus       440 ~~~l~sve~YDP~  452 (571)
T KOG4441|consen  440 SNCLNSVECYDPE  452 (571)
T ss_pred             ccccceEEEEcCC
Confidence                 45667753

>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.75  E-value=3.5  Score=31.45  Aligned_cols=103  Identities=10%  Similarity=0.129  Sum_probs=70.0

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc---------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee---
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANTGHS---------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH---  123 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~---------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~---  123 (181)
                      +.++.|+|+.+.|++........++=...|.-         .....+.+.-+|++.++--.++.++++.+.......   
T Consensus        88 vS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~~t~~~~~~  167 (316)
T COG3204          88 VSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDADTTVISAK  167 (316)
T ss_pred             ccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcCCccEEecc
Confidence            66899999999988876665555553332221         112345666778888888888899988776542211   


Q ss_pred             --ee-----ec-CCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        124 --TF-----KH-ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       124 --~~-----~~-~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                        .+     .+ ....-++|++|..+.|+.+-+-+-+.||...
T Consensus       168 ~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~  210 (316)
T COG3204         168 VQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVT  210 (316)
T ss_pred             ceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEe
Confidence              11     12 3457799999999999988888877777764

>PF15390 DUF4613: Domain of unknown function (DUF4613)

Probab=92.61  E-value=5.4  Score=33.37  Aligned_cols=108  Identities=12%  Similarity=0.217  Sum_probs=64.5

Q ss_pred             eeEEEEEEcCCCC----EEEEEeCCCcEEEEeCC-----CCcEEEEEec--CCce---EEEEEECCCCCEEEEeeCCCcE
Q psy10953         12 VDMWNVVFSPDDK----YVLSGSQSGKINLYGVE-----TGKLEQIFDT--RGKF---TLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus        12 ~~~~~~~~s~~g~----~l~~~~~d~~i~~~d~~-----~~~~~~~~~~--~~~~---~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      ..|..++|+|-+.    -|++....++|.+|-+.     .++.......  ...+   ..++.|+|....|+.-.....-
T Consensus        57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvS  136 (671)
T PF15390_consen   57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVS  136 (671)
T ss_pred             ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCcee
Confidence            4578999998532    45556668899999875     2333221111  1111   1257899988877664443333


Q ss_pred             EEEeCCC---------CCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCC
Q psy10953         78 NIFDANT---------GHSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARR  119 (181)
Q Consensus        78 ~i~d~~~---------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~  119 (181)
                      .+++++.         ...+.|.+..|.+||+.|+.+- ..=.-++||-...
T Consensus       137 V~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~~qK  188 (671)
T PF15390_consen  137 VLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDSAQK  188 (671)
T ss_pred             EeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecCchh
Confidence            3344321         2346788999999998665443 3345779986543

>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain

Probab=92.50  E-value=1.8  Score=34.07  Aligned_cols=92  Identities=11%  Similarity=0.130  Sum_probs=50.4

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEE-eCCCC-----cEEEEEe---cC----CceEEEEEECCCCCEEEEeeCC----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLY-GVETG-----KLEQIFD---TR----GKFTLSIAYSTDGHWIASGALD----   74 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~-d~~~~-----~~~~~~~---~~----~~~~~~~~~s~d~~~l~~~~~d----   74 (181)
                      .....+++.++| +++ ++.. .|..+ |....     +...++.   ..    .+....+.|.|||.+.++-+..    
T Consensus        72 ~~p~Gi~~~~~G-lyV-~~~~-~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~  148 (367)
T TIGR02604        72 SMVTGLAVAVGG-VYV-ATPP-DILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASK  148 (367)
T ss_pred             CCccceeEecCC-EEE-eCCC-eEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCce
Confidence            334778898888 444 4444 44434 54321     2222222   11    2234578999999876653311    


Q ss_pred             ---------------CcEEEEeCCCCC-------cccEEEEEEcCCCCEEEEEe
Q psy10953         75 ---------------GIINIFDANTGH-------SSWVLSTAFTRDGKFFISAS  106 (181)
Q Consensus        75 ---------------~~v~i~d~~~~~-------~~~v~~~~~s~~~~~l~~~~  106 (181)
                                     +.+.-++...+.       ..-...++|+|+|+++++-.
T Consensus       149 ~~~~~~~~~~~~~~~g~i~r~~pdg~~~e~~a~G~rnp~Gl~~d~~G~l~~tdn  202 (367)
T TIGR02604       149 VTRPGTSDESRQGLGGGLFRYNPDGGKLRVVAHGFQNPYGHSVDSWGDVFFCDN  202 (367)
T ss_pred             eccCCCccCcccccCceEEEEecCCCeEEEEecCcCCCccceECCCCCEEEEcc
Confidence                           345555554321       11235789999999877644

All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.

>KOG1916|consensus

Probab=92.50  E-value=0.81  Score=39.90  Aligned_cols=127  Identities=19%  Similarity=0.381  Sum_probs=72.2

Q ss_pred             CcEEEEeCC--CCcEEEEEe-----cCCceEEEEEEC---CCCCEEEEeeCCCcEEEEeCCC-------CCcccEEE---
Q psy10953         33 GKINLYGVE--TGKLEQIFD-----TRGKFTLSIAYS---TDGHWIASGALDGIINIFDANT-------GHSSWVLS---   92 (181)
Q Consensus        33 ~~i~~~d~~--~~~~~~~~~-----~~~~~~~~~~~s---~d~~~l~~~~~d~~v~i~d~~~-------~~~~~v~~---   92 (181)
                      |.+.+||+.  .|++...+.     ..+....-+.|.   +..-++..+..++.+.+....+       +|..++..   
T Consensus       153 g~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~~l~rsHs~~~~d~a~  232 (1283)
T KOG1916|consen  153 GELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRALRSLFRSHSQRVTDMAF  232 (1283)
T ss_pred             hhhheeehHhhccccccceEEeecCcCCCCcceeeecccccccceeeeccCCCceeEeeechHHHHHHHhcCCCcccHHH
Confidence            567788765  455432222     112222233443   3556777888888888776542       35444332   


Q ss_pred             --------EEEcCCCCEEEEEeCCCcEEEEecCC-----Cceeeeee-cCC-cEEEEEEccCC---------CEEEEEcC
Q psy10953         93 --------TAFTRDGKFFISASADHTVRVWNFAR-----RENMHTFK-HAD-QVWCVCVAPDG---------DKFVSVGE  148 (181)
Q Consensus        93 --------~~~s~~~~~l~~~~~d~~i~v~d~~~-----~~~~~~~~-~~~-~v~~~~~sp~g---------~~l~~~~~  148 (181)
                              ..+||||+.+++++.||.+++|.+.-     ..+++.++ |.+ +-.|.-|+.+.         .++++++.
T Consensus       233 ~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qiyi~g~~~~rclhewkphd~~p~vC~lc~~~~~~~v~i~~w~~~Itttd  312 (1283)
T KOG1916|consen  233 FAEGVLKLASLSPDGTVFAWAISDGSVGFYQIYITGKIVHRCLHEWKPHDKHPRVCWLCHKQEILVVSIGKWVLRITTTD  312 (1283)
T ss_pred             HhhchhhheeeCCCCcEEEEeecCCccceeeeeeeccccHhhhhccCCCCCCCceeeeeccccccCCccceeEEEEeccc
Confidence                    34899999999999999999887542     22344443 321 11222233322         34555554


Q ss_pred             -CCcEEEEeCCC
Q psy10953        149 -DKAVHMYSYKP  159 (181)
Q Consensus       149 -d~~v~i~~~~~  159 (181)
                       +..+++|.-.+
T Consensus       313 ~nre~k~w~~a~  324 (1283)
T KOG1916|consen  313 VNREEKFWAEAP  324 (1283)
T ss_pred             CCcceeEeeccc
Confidence             56788888544

>KOG2395|consensus

Probab=92.39  E-value=0.51  Score=38.56  Aligned_cols=67  Identities=19%  Similarity=0.364  Sum_probs=47.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ..|++-..+ .++++|+.+|.||+||--..+-...+..-+..+.-+..+.||++++... +..+-+.++
T Consensus       433 Fsc~aTT~s-G~IvvgS~~GdIRLYdri~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc-~tyLlLi~t  499 (644)
T KOG2395|consen  433 FSCFATTES-GYIVVGSLKGDIRLYDRIGRRAKTALPGLGDAIKHVDVTADGKWILATC-KTYLLLIDT  499 (644)
T ss_pred             cceeeecCC-ceEEEeecCCcEEeehhhhhhhhhcccccCCceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence            344444444 4688999999999999744444456667788888899999999887443 445555554

>PRK13684 Ycf48-like protein; Provisional

Probab=92.39  E-value=4.2  Score=31.60  Aligned_cols=140  Identities=16%  Similarity=0.165  Sum_probs=74.4

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ..++++.+.|++.+++++. .|.+..-.-..++ ...........+..+.+.++++.++++ ..|.+.+-....+     
T Consensus       173 g~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~~  250 (334)
T PRK13684        173 GVVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWSK  250 (334)
T ss_pred             ceEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCcccc
Confidence            3467888999887665554 5554432112222 222222233445678888988866554 4555543222211     


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                             ....+.++.+.|+++.++++ .+|.+. .....++.-....    .+...+.+.+-.+++.++ .+..|.|-.
T Consensus       251 ~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il~  327 (334)
T PRK13684        251 PIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLLR  327 (334)
T ss_pred             ccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEEE
Confidence                   11235678888888866554 456554 3333333222221    123577777776666655 555677666


Q ss_pred             Ee
Q psy10953        155 YS  156 (181)
Q Consensus       155 ~~  156 (181)
                      |+
T Consensus       328 ~~  329 (334)
T PRK13684        328 YV  329 (334)
T ss_pred             ec
Confidence            54

>PRK10115 protease 2; Provisional

Probab=92.35  E-value=6.7  Score=33.79  Aligned_cols=102  Identities=13%  Similarity=0.074  Sum_probs=62.0

Q ss_pred             EEEEEECCCCCEEEEeeC-----CCcEEEEeCCCCC--ccc----EEEEEEcCCCCEEEEEeCC------CcEEEEecCC
Q psy10953         56 TLSIAYSTDGHWIASGAL-----DGIINIFDANTGH--SSW----VLSTAFTRDGKFFISASAD------HTVRVWNFAR  118 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~-----d~~v~i~d~~~~~--~~~----v~~~~~s~~~~~l~~~~~d------~~i~v~d~~~  118 (181)
                      +..+.+||||++|+.+..     ...+++.|+.++.  ...    -..++|++|++.|+-...+      ..|+.+++.+
T Consensus       129 l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h~lgt  208 (686)
T PRK10115        129 LGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNVEPSFVWANDSWTFYYVRKHPVTLLPYQVWRHTIGT  208 (686)
T ss_pred             EeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCcceEEEEeeCCCEEEEEEecCCCCCCCEEEEEECCC
Confidence            445789999998886532     2367888887664  111    1458999999865544332      3677788877


Q ss_pred             C--ceeeeeec-CCcEE-EEEEccCCCEEEEEcC---CCcEEEEeC
Q psy10953        119 R--ENMHTFKH-ADQVW-CVCVAPDGDKFVSVGE---DKAVHMYSY  157 (181)
Q Consensus       119 ~--~~~~~~~~-~~~v~-~~~~sp~g~~l~~~~~---d~~v~i~~~  157 (181)
                      +  +....+.. ....+ ....+.++++++..+.   ++.+.+++.
T Consensus       209 ~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~  254 (686)
T PRK10115        209 PASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDA  254 (686)
T ss_pred             ChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEEC
Confidence            6  33333332 12233 3444558887655443   357888884

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=92.33  E-value=7.1  Score=34.06  Aligned_cols=143  Identities=16%  Similarity=0.298  Sum_probs=82.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceE------------EEEEECC--CCCEEEEeeC----------CCcE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT------------LSIAYST--DGHWIASGAL----------DGII   77 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~------------~~~~~s~--d~~~l~~~~~----------d~~v   77 (181)
                      .+.+++.++.|+.+.-.|.++|+....+...+...            ....-+|  .+..++.|+.          +|.|
T Consensus       259 ~~~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I  338 (764)
T TIGR03074       259 CARRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVI  338 (764)
T ss_pred             cCCEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEE
Confidence            34578888889999999999999886654322210            0111122  1334555532          5788


Q ss_pred             EEEeCCCCCcccEE--------------------------EEEEcCCCCEEEEEe------------------CCCcEEE
Q psy10953         78 NIFDANTGHSSWVL--------------------------STAFTRDGKFFISAS------------------ADHTVRV  113 (181)
Q Consensus        78 ~i~d~~~~~~~~v~--------------------------~~~~s~~~~~l~~~~------------------~d~~i~v  113 (181)
                      +-+|+++++..+..                          ..++++...++....                  ..+.|.-
T Consensus       339 ~A~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvA  418 (764)
T TIGR03074       339 RAFDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVA  418 (764)
T ss_pred             EEEECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEE
Confidence            88998776432211                          123444333222211                  1234555


Q ss_pred             EecCCCceeeeeec-CCcEEE---------EEEcc-CCC---EEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        114 WNFARRENMHTFKH-ADQVWC---------VCVAP-DGD---KFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       114 ~d~~~~~~~~~~~~-~~~v~~---------~~~sp-~g~---~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .|.++++....++. +..+|+         +.+.. +|+   .++.+..+|.+++.|..+|+.+-
T Consensus       419 LD~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~  483 (764)
T TIGR03074       419 LDATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIV  483 (764)
T ss_pred             EeCCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEe
Confidence            56777777666642 222222         22322 564   68888899999999999987764

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=91.91  E-value=1.9  Score=26.62  Aligned_cols=53  Identities=9%  Similarity=0.044  Sum_probs=32.9

Q ss_pred             EeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC-CCcEEEEeC
Q psy10953        105 ASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE-DKAVHMYSY  157 (181)
Q Consensus       105 ~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~  157 (181)
                      +..+|.+.-||+.+++.......-.-.++++++||+++++.+-. ..+|.-|-+
T Consensus        33 ~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~Et~~~Ri~rywl   86 (89)
T PF03088_consen   33 GRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVAETGRYRILRYWL   86 (89)
T ss_dssp             T---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEEEGGGTEEEEEES
T ss_pred             CCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEEeccCceEEEEEE
Confidence            44567888999988875544443346789999999998765543 334444433

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family

Probab=91.86  E-value=6.6  Score=32.67  Aligned_cols=140  Identities=13%  Similarity=0.248  Sum_probs=81.2

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce-EEEEEECC---CCCEEEEee------CCCcEEEEeCCCCCcccE--
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF-TLSIAYST---DGHWIASGA------LDGIINIFDANTGHSSWV--   90 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~---d~~~l~~~~------~d~~v~i~d~~~~~~~~v--   90 (181)
                      +..++.++.|+.+.-+|.++|+.+-.+...... ...+.-+|   ++. ++.+.      .++.+.-+|+++++..+.  
T Consensus       120 ~~~v~v~t~dg~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~-Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~  198 (527)
T TIGR03075       120 DGKVFFGTLDARLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGK-VITGISGGEFGVRGYVTAYDAKTGKLVWRRY  198 (527)
T ss_pred             CCEEEEEcCCCEEEEEECCCCCEEeecccccccccccccCCcEEECCE-EEEeecccccCCCcEEEEEECCCCceeEecc
Confidence            345677788999999999999987554321110 00111122   333 44433      257788888765432110  


Q ss_pred             --------------------------------------EEEEEcCCCCEEEEEeC-----CC-----------cEEEEec
Q psy10953         91 --------------------------------------LSTAFTRDGKFFISASA-----DH-----------TVRVWNF  116 (181)
Q Consensus        91 --------------------------------------~~~~~s~~~~~l~~~~~-----d~-----------~i~v~d~  116 (181)
                                                            ...+++|...++..+.-     ++           .|.-.|+
T Consensus       199 ~~p~~~~~~~~~~~~~~~~~~~~tw~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~  278 (527)
T TIGR03075       199 TVPGDMGYLDKADKPVGGEPGAKTWPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDP  278 (527)
T ss_pred             CcCCCcccccccccccccccccCCCCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEcc
Confidence                                                  02356665554443331     11           4666677


Q ss_pred             CCCceeeeeec-CCcEE---------EEEEccCCC---EEEEEcCCCcEEEEeCCCCeeE
Q psy10953        117 ARRENMHTFKH-ADQVW---------CVCVAPDGD---KFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       117 ~~~~~~~~~~~-~~~v~---------~~~~sp~g~---~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ++++....++. +..+|         -+.+..+|+   .++.+..+|.+++.|..+|+.+
T Consensus       279 ~TG~~~W~~Q~~~~D~wD~d~~~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i  338 (527)
T TIGR03075       279 DTGKIKWHYQTTPHDEWDYDGVNEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLL  338 (527)
T ss_pred             ccCCEEEeeeCCCCCCccccCCCCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCcee
Confidence            88887766652 11222         222334776   6778889999999999999875

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.

>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea

Probab=91.66  E-value=6.2  Score=31.91  Aligned_cols=140  Identities=14%  Similarity=0.184  Sum_probs=67.2

Q ss_pred             cCCCCEEEEE--eCC----CcEEEEeCCCCcEEEEEecC---CceEEEEEECCCCCEEEEeeC-----------------
Q psy10953         20 SPDDKYVLSG--SQS----GKINLYGVETGKLEQIFDTR---GKFTLSIAYSTDGHWIASGAL-----------------   73 (181)
Q Consensus        20 s~~g~~l~~~--~~d----~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~s~d~~~l~~~~~-----------------   73 (181)
                      -|+|+.++++  +.+    |-+.++|-++.++.......   ..+.+.+-+.|..+.+++...                 
T Consensus       138 lp~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~  217 (461)
T PF05694_consen  138 LPDGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEA  217 (461)
T ss_dssp             -SS--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHH
T ss_pred             cCCccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhc
Confidence            4788887764  222    35778888877777665542   234556778888888877643                 


Q ss_pred             ---CCcEEEEeCCCCCc----------ccEEEEEEcC--CCCEEEEEeC-CCcEEEEec-CCC----ceeeeeec-----
Q psy10953         74 ---DGIINIFDANTGHS----------SWVLSTAFTR--DGKFFISASA-DHTVRVWNF-ARR----ENMHTFKH-----  127 (181)
Q Consensus        74 ---d~~v~i~d~~~~~~----------~~v~~~~~s~--~~~~l~~~~~-d~~i~v~d~-~~~----~~~~~~~~-----  127 (181)
                         -.++.+||..+...          ..+..+.|..  +..+-+++++ ..+|-.|-- ..+    +.+.++..     
T Consensus       218 ~~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~  297 (461)
T PF05694_consen  218 GKYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEG  297 (461)
T ss_dssp             H-S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--S
T ss_pred             ccccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCc
Confidence               35899999875321          2244555554  4445444443 444444422 222    12222221     


Q ss_pred             -------------CCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCC
Q psy10953        128 -------------ADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKP  159 (181)
Q Consensus       128 -------------~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~  159 (181)
                                   +.-|+.+.+|.|.++|+... .+|.|+.||+..
T Consensus       298 ~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISD  343 (461)
T PF05694_consen  298 WILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISD  343 (461)
T ss_dssp             S---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SS
T ss_pred             ccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCC
Confidence                         23368899999999998777 589999999854

The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=91.54  E-value=8  Score=33.30  Aligned_cols=70  Identities=6%  Similarity=0.160  Sum_probs=47.2

Q ss_pred             EEEEEEcC--CCCEEEEEeCCCcEEEEecCC-------C-------------ceeeeeecCCcEEEEEEc--cCCCEEEE
Q psy10953         90 VLSTAFTR--DGKFFISASADHTVRVWNFAR-------R-------------ENMHTFKHADQVWCVCVA--PDGDKFVS  145 (181)
Q Consensus        90 v~~~~~s~--~~~~l~~~~~d~~i~v~d~~~-------~-------------~~~~~~~~~~~v~~~~~s--p~g~~l~~  145 (181)
                      |+.+....  +.+.|+.|..||.|.+|...+       .             ++...+......|+++++  ...++||+
T Consensus       103 IN~i~v~~lg~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAV  182 (717)
T PF08728_consen  103 INFIKVGDLGGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAV  182 (717)
T ss_pred             eeEEEecccCCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEE
Confidence            44444333  345788888999999996521       0             012223345679999999  77888888


Q ss_pred             EcCCCcEEEEeCCC
Q psy10953        146 VGEDKAVHMYSYKP  159 (181)
Q Consensus       146 ~~~d~~v~i~~~~~  159 (181)
                      ++....|.+|.+..
T Consensus       183 SsNs~~VTVFaf~l  196 (717)
T PF08728_consen  183 SSNSQEVTVFAFAL  196 (717)
T ss_pred             ecCCceEEEEEEec
Confidence            77777888887754

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>KOG3630|consensus

Probab=90.90  E-value=3  Score=37.46  Aligned_cols=132  Identities=12%  Similarity=0.043  Sum_probs=78.7

Q ss_pred             EEEEcCCCCEEE--EEeCCCcEEEEeCCCCcEEE-----EEe------cCCceEEEEEECCCC-CEEEEeeCCCcEEEEe
Q psy10953         16 NVVFSPDDKYVL--SGSQSGKINLYGVETGKLEQ-----IFD------TRGKFTLSIAYSTDG-HWIASGALDGIINIFD   81 (181)
Q Consensus        16 ~~~~s~~g~~l~--~~~~d~~i~~~d~~~~~~~~-----~~~------~~~~~~~~~~~s~d~-~~l~~~~~d~~v~i~d   81 (181)
                      .+...+|+...+  ..+.+-.|..||++.-....     .+.      ....+..++.|.|.= ...+....|+.+.+..
T Consensus       105 ~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~  184 (1405)
T KOG3630|consen  105 IFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKS  184 (1405)
T ss_pred             EEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhh
Confidence            344456766543  34445578889986432211     111      113344567777743 2234455676666665


Q ss_pred             CCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC--ceeeeee--cCCcEEEEEEccCCCEEEEEc
Q psy10953         82 ANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR--ENMHTFK--HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        82 ~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~--~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      +..        .-...++++.|+|.|+.++.|-..|++.-|-....  ..+..-+  ....|.+++|-....++++-+
T Consensus       185 ~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~  262 (1405)
T KOG3630|consen  185 TKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG  262 (1405)
T ss_pred             hhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence            431        12345789999999999999999999998865432  1111111  235788999887777776654

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.83  E-value=0.84  Score=37.87  Aligned_cols=35  Identities=31%  Similarity=0.605  Sum_probs=24.1

Q ss_pred             EEEEEEcC----CCCEEEEEeCCCcEEEEecCCCceeee
Q psy10953         90 VLSTAFTR----DGKFFISASADHTVRVWNFARRENMHT  124 (181)
Q Consensus        90 v~~~~~s~----~~~~l~~~~~d~~i~v~d~~~~~~~~~  124 (181)
                      +...++++    +..++++.+.|+.+|+||+.++..+.+
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~  255 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLAT  255 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEE
Confidence            44455555    556888888888899998888877444

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs

Probab=90.62  E-value=9.1  Score=33.18  Aligned_cols=70  Identities=16%  Similarity=0.174  Sum_probs=48.4

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCC----------C--ceeee-e---------ecCCcEEEEEEccC---CCEE
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFAR----------R--ENMHT-F---------KHADQVWCVCVAPD---GDKF  143 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~----------~--~~~~~-~---------~~~~~v~~~~~sp~---g~~l  143 (181)
                      .|..+.++|+|++++-.+..+ |.|..+..          +  ...+. +         .....|..+.|+|.   +..|
T Consensus        86 ~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l  164 (717)
T PF10168_consen   86 EVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL  164 (717)
T ss_pred             eEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence            477889999999998888765 44444421          1  11221 1         12236778999997   4788


Q ss_pred             EEEcCCCcEEEEeCCC
Q psy10953        144 VSVGEDKAVHMYSYKP  159 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~  159 (181)
                      ++-..|+.+++||+..
T Consensus       165 ~vLtsdn~lR~y~~~~  180 (717)
T PF10168_consen  165 VVLTSDNTLRLYDISD  180 (717)
T ss_pred             EEEecCCEEEEEecCC
Confidence            8888899999999864

It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].

>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins

Probab=90.61  E-value=1  Score=21.09  Aligned_cols=26  Identities=23%  Similarity=0.415  Sum_probs=19.8

Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      .+.+++++++|+.+++=+.++.|+++
T Consensus         3 ~P~gvav~~~g~i~VaD~~n~rV~vf   28 (28)
T PF01436_consen    3 YPHGVAVDSDGNIYVADSGNHRVQVF   28 (28)
T ss_dssp             SEEEEEEETTSEEEEEECCCTEEEEE
T ss_pred             CCcEEEEeCCCCEEEEECCCCEEEEC
Confidence            35678888888888877777777764

For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.

>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]

Probab=90.60  E-value=5.2  Score=29.12  Aligned_cols=115  Identities=12%  Similarity=0.122  Sum_probs=68.1

Q ss_pred             eCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEEEEc------------C
Q psy10953         30 SQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFT------------R   97 (181)
Q Consensus        30 ~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~~~s------------~   97 (181)
                      -.++....+|.++-+.+..+...+.   .+.+..|++.|..++...++..-|.++........+++.            -
T Consensus       108 w~egvaf~~d~~t~~~lg~~~y~Ge---GWgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V  184 (262)
T COG3823         108 WKEGVAFKYDADTLEELGRFSYEGE---GWGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV  184 (262)
T ss_pred             eccceeEEEChHHhhhhcccccCCc---ceeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee
Confidence            3566777777776666665555444   344556777777776666677667654322111111111            2


Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeee-------------cCCcEEEEEEccCCCEEEEEc
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTFK-------------HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------------~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      +|..++-...+..|...+..+++...-+.             +.+..+++|+.|++.+|...+
T Consensus       185 dG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG  247 (262)
T COG3823         185 DGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG  247 (262)
T ss_pred             ccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence            56667777777777777777776544332             233567899999886555444

>KOG4460|consensus

Probab=90.58  E-value=6.7  Score=32.51  Aligned_cols=74  Identities=18%  Similarity=0.236  Sum_probs=44.6

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEe---------CCCCcEE----------EEEecCC-ceEEEEEECCCC---CEE
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYG---------VETGKLE----------QIFDTRG-KFTLSIAYSTDG---HWI   68 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d---------~~~~~~~----------~~~~~~~-~~~~~~~~s~d~---~~l   68 (181)
                      ..|..+..++.|..++-++-+|.+.++=         +++|+..          +.|.... -....++|+|+.   .+|
T Consensus       104 feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~hL  183 (741)
T KOG4460|consen  104 FEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPHL  183 (741)
T ss_pred             EEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCceE
Confidence            3477888999999999999898777653         1223211          0111111 112356777764   456


Q ss_pred             EEeeCCCcEEEEeCCCC
Q psy10953         69 ASGALDGIINIFDANTG   85 (181)
Q Consensus        69 ~~~~~d~~v~i~d~~~~   85 (181)
                      +.-.+|+.+++||+...
T Consensus       184 ~iL~sdnviRiy~lS~~  200 (741)
T KOG4460|consen  184 VLLTSDNVIRIYSLSEP  200 (741)
T ss_pred             EEEecCcEEEEEecCCc
Confidence            66677777777777543

>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases

Probab=90.42  E-value=7  Score=30.35  Aligned_cols=64  Identities=17%  Similarity=0.255  Sum_probs=41.1

Q ss_pred             EEEEEEcC-------CCCEEEEEeCCCcEEEEecCCCceeeee----e-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         90 VLSTAFTR-------DGKFFISASADHTVRVWNFARRENMHTF----K-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        90 v~~~~~s~-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      +..+.|.+       .|+++++.-..+.|....+.....+...    . ...++..+++.|||..+++-..++.|+
T Consensus       255 p~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy  330 (331)
T PF07995_consen  255 PTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY  330 (331)
T ss_dssp             EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred             cCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence            44555553       3556666666778888888654333221    1 334789999999999999888888775

The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....

>KOG1916|consensus

Probab=90.37  E-value=0.36  Score=41.95  Aligned_cols=69  Identities=17%  Similarity=0.288  Sum_probs=44.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-----------eEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----------FTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----------~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      |.-+-|-++.-++-.+-.++++++....+... ..+..|+.           +..--.+||||..|+.+..||.+..|-+
T Consensus       186 V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi  264 (1283)
T KOG1916|consen  186 VSWCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI  264 (1283)
T ss_pred             eeecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence            34444455666777777788888776543221 22222322           2223357999999999999999998875


Q ss_pred             C
Q psy10953         83 N   83 (181)
Q Consensus        83 ~   83 (181)
                      .
T Consensus       265 y  265 (1283)
T KOG1916|consen  265 Y  265 (1283)
T ss_pred             e
Confidence            3

>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates

Probab=90.12  E-value=1.2  Score=36.90  Aligned_cols=37  Identities=22%  Similarity=0.421  Sum_probs=29.0

Q ss_pred             EEEEEEcC----CCCEEEEEeCCCcEEEEeCCCCcEEEEEe
Q psy10953         14 MWNVVFSP----DDKYVLSGSQSGKINLYGVETGKLEQIFD   50 (181)
Q Consensus        14 ~~~~~~s~----~g~~l~~~~~d~~i~~~d~~~~~~~~~~~   50 (181)
                      ...+++++    +..++++.+.|+++|+||+.+++++....
T Consensus       217 ~~~~~~~~~~~~~~~~l~tl~~D~~LRiW~l~t~~~~~~~~  257 (547)
T PF11715_consen  217 AASLAVSSSEINDDTFLFTLSRDHTLRIWSLETGQCLATID  257 (547)
T ss_dssp             EEEEEE-----ETTTEEEEEETTSEEEEEETTTTCEEEEEE
T ss_pred             cceEEEecceeCCCCEEEEEeCCCeEEEEECCCCeEEEEec
Confidence            45566666    77899999999999999999999966543

The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.

>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4

Probab=89.85  E-value=3.2  Score=25.63  Aligned_cols=38  Identities=21%  Similarity=0.327  Sum_probs=18.8

Q ss_pred             CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE
Q psy10953         32 SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS   70 (181)
Q Consensus        32 d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~   70 (181)
                      +|.+.-||..+++...++..-. +...+++++|+..++.
T Consensus        36 ~GRll~ydp~t~~~~vl~~~L~-fpNGVals~d~~~vlv   73 (89)
T PF03088_consen   36 TGRLLRYDPSTKETTVLLDGLY-FPNGVALSPDESFVLV   73 (89)
T ss_dssp             -EEEEEEETTTTEEEEEEEEES-SEEEEEE-TTSSEEEE
T ss_pred             CcCEEEEECCCCeEEEehhCCC-ccCeEEEcCCCCEEEE
Confidence            3456666666665544443322 2346666666664443

3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.

>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family

Probab=88.87  E-value=15  Score=32.10  Aligned_cols=130  Identities=15%  Similarity=0.124  Sum_probs=67.0

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCccc-EEEEEEcCCCCE
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSW-VLSTAFTRDGKF  101 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~-v~~~~~s~~~~~  101 (181)
                      +..++.++.++.|.-.|.++|+.+-.+..........      .   ...+. -+.+|+...+.... +.. +=...+..
T Consensus       194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~------~---~~~cR-Gvay~~~p~~~~~~~~~~-~p~~~~~r  262 (764)
T TIGR03074       194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGR------Q---HQTCR-GVSYYDAPAAAAGPAAPA-APADCARR  262 (764)
T ss_pred             CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCccccc------c---ccccc-ceEEecCCcccccccccc-cccccCCE
Confidence            4566677778889999999998766554432211000      0   01112 23335432111000 000 00123445


Q ss_pred             EEEEeCCCcEEEEecCCCceeeeeecCCcEE-------------EEEEcc--CCCEEEEEcC----------CCcEEEEe
Q psy10953        102 FISASADHTVRVWNFARRENMHTFKHADQVW-------------CVCVAP--DGDKFVSVGE----------DKAVHMYS  156 (181)
Q Consensus       102 l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~-------------~~~~sp--~g~~l~~~~~----------d~~v~i~~  156 (181)
                      ++.++.|+.+.-.|.++++....+...+.+.             ...-+|  .+..++.++.          ++.|+-+|
T Consensus       263 V~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~D  342 (764)
T TIGR03074       263 IILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFD  342 (764)
T ss_pred             EEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEE
Confidence            6667778888888888887776554322220             001111  1345555542          57789999


Q ss_pred             CCCCeeE
Q psy10953        157 YKPEEEV  163 (181)
Q Consensus       157 ~~~~~~~  163 (181)
                      ..+|+++
T Consensus       343 a~TGkl~  349 (764)
T TIGR03074       343 VNTGALV  349 (764)
T ss_pred             CCCCcEe
Confidence            9888765

This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=88.76  E-value=8  Score=28.72  Aligned_cols=126  Identities=21%  Similarity=0.356  Sum_probs=73.5

Q ss_pred             EEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-C--CcEEEEeCCC--CCcccE------------EEEEEcC
Q psy10953         35 INLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-D--GIINIFDANT--GHSSWV------------LSTAFTR   97 (181)
Q Consensus        35 i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d--~~v~i~d~~~--~~~~~v------------~~~~~s~   97 (181)
                      -.+||+.+++....-.....+..+-.+-+||+++.+|+. +  ..+++++...  ....+.            -.+..-|
T Consensus        48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~  127 (243)
T PF07250_consen   48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLP  127 (243)
T ss_pred             EEEEecCCCcEEeccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECC
Confidence            558999998876654333444444567789999998754 2  4677887654  111111            1234567


Q ss_pred             CCCEEEEEeCCCc-EEEEecCCC-ceeeeee---------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         98 DGKFFISASADHT-VRVWNFARR-ENMHTFK---------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        98 ~~~~l~~~~~d~~-i~v~d~~~~-~~~~~~~---------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ||+.++.|+.... ..+|+-... .....+.         ...-...+-+.|+|+.|+.+..+  -.|||......
T Consensus       128 DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v  201 (243)
T PF07250_consen  128 DGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTV  201 (243)
T ss_pred             CCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeE
Confidence            8998888887643 445543221 1111111         01112256778999999888754  45667766544

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>KOG4499|consensus

Probab=88.58  E-value=5  Score=29.76  Aligned_cols=49  Identities=10%  Similarity=0.095  Sum_probs=40.2

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST   63 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~   63 (181)
                      -.+++..+|++.++.-.-++|..+|..+|+.+..+......+.+++|.-
T Consensus       215 DGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgG  263 (310)
T KOG4499|consen  215 DGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGG  263 (310)
T ss_pred             CcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecC
Confidence            3456677888888888889999999999999988877777788888854

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=88.36  E-value=10  Score=29.38  Aligned_cols=58  Identities=19%  Similarity=0.342  Sum_probs=40.3

Q ss_pred             eEEEEEEcCCCCEEEEEeCC------CcEEEEeCCCCcEEEEEec---------------CCceEEEEEECCCCCEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS------GKINLYGVETGKLEQIFDT---------------RGKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d------~~i~~~d~~~~~~~~~~~~---------------~~~~~~~~~~s~d~~~l~~~   71 (181)
                      +.=+|++.++|.++++.-.+      ..|..++.. |+....+..               .+.-..+++++|||+.|+++
T Consensus        86 D~Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~  164 (326)
T PF13449_consen   86 DPEGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAA  164 (326)
T ss_pred             ChhHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEE
Confidence            33467888899988888778      889888876 665443321               12234689999999966654

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=87.74  E-value=3.2  Score=30.06  Aligned_cols=50  Identities=20%  Similarity=0.335  Sum_probs=38.0

Q ss_pred             CEEEEEeCCCcEEEEecCC--CceeeeeecCCcEEEEEEccCCCEEEEEcCC
Q psy10953        100 KFFISASADHTVRVWNFAR--RENMHTFKHADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus       100 ~~l~~~~~d~~i~v~d~~~--~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                      +.|+.+...+.|.+|++..  -..+..+.--+.|..+..+..|+++++--.+
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k   80 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEK   80 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEee
Confidence            4554556678899999873  3456667666889999999999999997643

>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast [])

Probab=87.31  E-value=7.2  Score=27.14  Aligned_cols=29  Identities=17%  Similarity=0.272  Sum_probs=23.9

Q ss_pred             cEEEEEEccCC------CEEEEEcCCCcEEEEeCC
Q psy10953        130 QVWCVCVAPDG------DKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       130 ~v~~~~~sp~g------~~l~~~~~d~~v~i~~~~  158 (181)
                      .+..++|||.|      -.|++...++.|.+|.-.
T Consensus        87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~  121 (173)
T PF12657_consen   87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPP  121 (173)
T ss_pred             cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecC
Confidence            68899999954      367888889999999976

The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].

>PHA02790 Kelch-like protein; Provisional

Probab=86.89  E-value=16  Score=30.01  Aligned_cols=98  Identities=7%  Similarity=-0.028  Sum_probs=50.2

Q ss_pred             CCCCEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCceE-EEEEECCCCCEEEEeeCC--CcEEEEeCCCCC------
Q psy10953         21 PDDKYVLSGSQSG-----KINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASGALD--GIINIFDANTGH------   86 (181)
Q Consensus        21 ~~g~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~-~~~~~s~d~~~l~~~~~d--~~v~i~d~~~~~------   86 (181)
                      .++..+++|+.++     ++..||..+++....-....... .++. ..+++..+.|+.+  ..+..||..+..      
T Consensus       270 ~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~~~v-~~~~~iYviGG~~~~~sve~ydp~~n~W~~~~~  348 (480)
T PHA02790        270 VGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYASGV-PANNKLYVVGGLPNPTSVERWFHGDAAWVNMPS  348 (480)
T ss_pred             ECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcceEE-EECCEEEEECCcCCCCceEEEECCCCeEEECCC
Confidence            3555667777543     46678877765443222111111 1121 2366766777753  357778865321      


Q ss_pred             --cccEEEEEEcCCCCEEEEEeCCC---cEEEEecCCC
Q psy10953         87 --SSWVLSTAFTRDGKFFISASADH---TVRVWNFARR  119 (181)
Q Consensus        87 --~~~v~~~~~s~~~~~l~~~~~d~---~i~v~d~~~~  119 (181)
                        ..........-+|+..+.|+.++   .+..||..+.
T Consensus       349 l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~  386 (480)
T PHA02790        349 LLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHD  386 (480)
T ss_pred             CCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCC
Confidence              00111122234677777777543   4667777653

>PF14727 PHTB1_N: PTHB1 N-terminus

Probab=86.84  E-value=15  Score=29.68  Aligned_cols=135  Identities=14%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEE---EEEec-CCceEEEEEECC-----CCCEEEEeeCCCcEEEEeCCC--CC---c
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLE---QIFDT-RGKFTLSIAYST-----DGHWIASGALDGIINIFDANT--GH---S   87 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~---~~~~~-~~~~~~~~~~s~-----d~~~l~~~~~d~~v~i~d~~~--~~---~   87 (181)
                      +...+++|+..|.+++|+-..+...   .++.. -+.++..+...+     +...||. -.-+++.+|.+..  ++   .
T Consensus        36 ~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g  114 (418)
T PF14727_consen   36 GSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEHG  114 (418)
T ss_pred             CccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCcccC
Confidence            3457899999999999987543321   12221 233455554432     2233443 3344666666521  11   0


Q ss_pred             --------------ccEEEEEEcC----C-CCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         88 --------------SWVLSTAFTR----D-GKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        88 --------------~~v~~~~~s~----~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                                    .....+..-|    . ..++..-+.||.+.+|+-....-.+.++.---.--+++.|.-..|++++.
T Consensus       115 ~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~ss  194 (418)
T PF14727_consen  115 NQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASS  194 (418)
T ss_pred             cEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecC
Confidence                          0111122222    2 24677778899999998655332222221111223466777778888888


Q ss_pred             CCcEEEEeC
Q psy10953        149 DKAVHMYSY  157 (181)
Q Consensus       149 d~~v~i~~~  157 (181)
                      +..+..|.+
T Consensus       195 s~~l~~Yky  203 (418)
T PF14727_consen  195 SWTLECYKY  203 (418)
T ss_pred             ceeEEEecH
Confidence            888888876

>PF13449 Phytase-like: Esterase-like activity of phytase

Probab=86.30  E-value=14  Score=28.67  Aligned_cols=57  Identities=23%  Similarity=0.427  Sum_probs=36.0

Q ss_pred             EEEEEcCCCCEEEEEeCC------CcEEEEecCCCceeeee----------------ecCCcEEEEEEccCCCEEEEEcC
Q psy10953         91 LSTAFTRDGKFFISASAD------HTVRVWNFARRENMHTF----------------KHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~----------------~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      -++++.++|.++++.-.+      ..|+-++.. +.....+                ......-+++++|+|+.|+++.+
T Consensus        88 Egi~~~~~g~~~is~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E  166 (326)
T PF13449_consen   88 EGIAVPPDGSFWISSEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAME  166 (326)
T ss_pred             hHeEEecCCCEEEEeCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEEC
Confidence            345566777777776666      677777754 3322221                12335778999999997776653

>KOG1520|consensus

Probab=85.60  E-value=16  Score=28.90  Aligned_cols=51  Identities=8%  Similarity=0.059  Sum_probs=27.5

Q ss_pred             CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC-CcEEEEeC
Q psy10953        107 ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED-KAVHMYSY  157 (181)
Q Consensus       107 ~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-~~v~i~~~  157 (181)
                      .+|.+.-||..+...-.....-.-.+++++|||+.+++.+-.- .+++-|-+
T Consensus       197 ~~GRl~~YD~~tK~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~rywi  248 (376)
T KOG1520|consen  197 PTGRLFRYDPSTKVTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYWI  248 (376)
T ss_pred             CccceEEecCcccchhhhhhcccccccccCCCCCCEEEEEeeccceeeeeEe
Confidence            3455555555443322122222345789999999998766532 34444444

>KOG3616|consensus

Probab=84.64  E-value=3.1  Score=35.98  Aligned_cols=65  Identities=15%  Similarity=0.271  Sum_probs=35.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         88 SWVLSTAFTRDGKFFISASADHTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      ..+.+++-+|.|+.++.+..|+.|.+|++-...  .+++..  .+...+.|...|  +++...|+++.-|.
T Consensus        15 e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~--~p~~nlv~tnhg--l~~~tsdrr~la~~   81 (1636)
T KOG3616|consen   15 EFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA--KPKENLVFTNHG--LVTATSDRRALAWK   81 (1636)
T ss_pred             ceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc--CCccceeeeccc--eEEEeccchhheee
Confidence            345666667778888888888888887764332  233322  223334444333  44444454444444

>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []

Probab=84.61  E-value=14  Score=31.93  Aligned_cols=93  Identities=15%  Similarity=0.187  Sum_probs=63.5

Q ss_pred             CCEEEEeeCCCcEEEEeCCC------------CC---------------cccEEEEEEc--CCCCEEEEEeCCCcEEEEe
Q psy10953         65 GHWIASGALDGIINIFDANT------------GH---------------SSWVLSTAFT--RDGKFFISASADHTVRVWN  115 (181)
Q Consensus        65 ~~~l~~~~~d~~v~i~d~~~------------~~---------------~~~v~~~~~s--~~~~~l~~~~~d~~i~v~d  115 (181)
                      ...|+.+..||.|.+|..+.            .+               .....++++.  ...+++|.++....|.||-
T Consensus       114 ~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFa  193 (717)
T PF08728_consen  114 EEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFA  193 (717)
T ss_pred             eeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEE
Confidence            35677888999999996420            00               1235667777  7778888888888888886


Q ss_pred             cCCC--cee--eeeecCCcEEEEEEccCC---C---EEEEEcCCCcEEEEeC
Q psy10953        116 FARR--ENM--HTFKHADQVWCVCVAPDG---D---KFVSVGEDKAVHMYSY  157 (181)
Q Consensus       116 ~~~~--~~~--~~~~~~~~v~~~~~sp~g---~---~l~~~~~d~~v~i~~~  157 (181)
                      +...  +..  ....+...|.+++|-++.   .   .+++++..|.+-+|++
T Consensus       194 f~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I  245 (717)
T PF08728_consen  194 FALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI  245 (717)
T ss_pred             EeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence            6542  111  122345568888887653   2   7788888999988877

RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].

>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides

Probab=84.15  E-value=7.5  Score=23.84  Aligned_cols=49  Identities=10%  Similarity=0.139  Sum_probs=31.2

Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC-CCcEEEEeCCC
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYKP  159 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~~  159 (181)
                      +.|..||..+-+.  ....-...+++.++|++++++.++. .+.|++|....
T Consensus        36 ~~Vvyyd~~~~~~--va~g~~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~   85 (86)
T PF01731_consen   36 GNVVYYDGKEVKV--VASGFSFANGIAISPDKKYLYVASSLAHSIHVYKRHK   85 (86)
T ss_pred             ceEEEEeCCEeEE--eeccCCCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence            4566666533211  1112234678899999999877775 67999988653

The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity

>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3

Probab=83.95  E-value=14  Score=26.85  Aligned_cols=125  Identities=14%  Similarity=0.296  Sum_probs=63.8

Q ss_pred             CEEEEEeCCCcEEEEeCCC--CcEEEEEecCCceEEEEEECCCCCEEEEeeCCC------cEEEE---eCCCCCcccEEE
Q psy10953         24 KYVLSGSQSGKINLYGVET--GKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG------IINIF---DANTGHSSWVLS   92 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~------~v~i~---d~~~~~~~~v~~   92 (181)
                      ..|+.+....+|.+|++.+  .+....|.+-+. +..+.++..|.++++--.+.      .+++|   ........++..
T Consensus        29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~-V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~v  107 (215)
T PF14761_consen   29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGR-VLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRV  107 (215)
T ss_pred             ceEEEEcCCCEEEEEEcccCCCceeEEEcchhh-eeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEE
Confidence            4444445567899999883  344455655444 56899999999999863322      33443   222222222221


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                       ..-  |. -++.+..+..     ...-.+..++....+.+++.=|-...|+.|+ ++.+.+|.++.
T Consensus       108 -Ria--G~-~v~~~~~~~~-----~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~  164 (215)
T PF14761_consen  108 -RIA--GH-RVTPSFNESS-----KDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKY  164 (215)
T ss_pred             -EEc--cc-ccccCCCCcc-----ccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEE
Confidence             000  10 0111111111     1122344455555566665555444444455 46888888754

>smart00564 PQQ beta-propeller repeat

Probab=83.95  E-value=3.4  Score=19.66  Aligned_cols=23  Identities=26%  Similarity=0.374  Sum_probs=19.0

Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEE
Q psy10953         25 YVLSGSQSGKINLYGVETGKLEQ   47 (181)
Q Consensus        25 ~l~~~~~d~~i~~~d~~~~~~~~   47 (181)
                      .+++++.++.+..+|.++|+..-
T Consensus         8 ~v~~~~~~g~l~a~d~~~G~~~W   30 (33)
T smart00564        8 TVYVGSTDGTLYALDAKTGEILW   30 (33)
T ss_pred             EEEEEcCCCEEEEEEcccCcEEE
Confidence            57778889999999998888654

Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.

>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]

Probab=83.79  E-value=4.2  Score=33.58  Aligned_cols=61  Identities=18%  Similarity=0.296  Sum_probs=45.4

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ...++|+|+..|-|++||--..+-...+..-+..+..+..+.+|+++++... ..+-+-|+.
T Consensus       572 esGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~~  632 (776)
T COG5167         572 ESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDVP  632 (776)
T ss_pred             cCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEecc
Confidence            4568999999999999997655555556666788888889999998775543 356666664

>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes

Probab=83.64  E-value=16  Score=27.19  Aligned_cols=108  Identities=16%  Similarity=0.266  Sum_probs=59.8

Q ss_pred             EEEcCCCCEEEEEeCC---CcEEEEeCCC-CcEEEEEec-----CCceEEEEEECCCCCEEEEeeCCCc-EEEEeCCCCC
Q psy10953         17 VVFSPDDKYVLSGSQS---GKINLYGVET-GKLEQIFDT-----RGKFTLSIAYSTDGHWIASGALDGI-INIFDANTGH   86 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d---~~i~~~d~~~-~~~~~~~~~-----~~~~~~~~~~s~d~~~l~~~~~d~~-v~i~d~~~~~   86 (181)
                      =++-|||+++.+|+.-   ..+++++-.+ ...-.+...     .+.+=-+...-+||+.|+.|+...- .-+|......
T Consensus        72 g~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~  151 (243)
T PF07250_consen   72 GAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPG  151 (243)
T ss_pred             cCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCC
Confidence            3466899999888752   3578887543 111011111     1111114555679999998877643 3344332110


Q ss_pred             cccE-----------------EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee
Q psy10953         87 SSWV-----------------LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK  126 (181)
Q Consensus        87 ~~~v-----------------~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~  126 (181)
                      ...+                 -.+...|+|++++.+..+  -.+||..+.+.+..++
T Consensus       152 ~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~lP  206 (243)
T PF07250_consen  152 PGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRTLP  206 (243)
T ss_pred             CCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEeeCC
Confidence            0000                 124678999988877754  5566887776555553

Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].

>TIGR02608 delta_60_rpt delta-60 repeat domain

Probab=82.06  E-value=6.3  Score=21.95  Aligned_cols=32  Identities=16%  Similarity=0.261  Sum_probs=22.7

Q ss_pred             cEEEEEEccCCCEEEEEcC-----CCcEEEEeCCCCe
Q psy10953        130 QVWCVCVAPDGDKFVSVGE-----DKAVHMYSYKPEE  161 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~-----d~~v~i~~~~~~~  161 (181)
                      ..+++++.|||+.+++|..     +....+.++.+..
T Consensus         2 ~~~~~~~q~DGkIlv~G~~~~~~~~~~~~l~Rln~DG   38 (55)
T TIGR02608         2 RAYAVAVQSDGKILVAGYVDNSSGNNDFVLARLNADG   38 (55)
T ss_pred             ceEEEEECCCCcEEEEEEeecCCCcccEEEEEECCCC
Confidence            4678899999999998853     3355666665543

This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.

>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []

Probab=82.03  E-value=25  Score=30.86  Aligned_cols=30  Identities=3%  Similarity=0.163  Sum_probs=17.7

Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ..++|.++-+.|+.+. ...+.++++.+...
T Consensus       207 ~rI~W~~~~~~lLv~~-r~~l~~~d~~~~~~  236 (765)
T PF10214_consen  207 KRILWVSDSNRLLVCN-RSKLMLIDFESNWQ  236 (765)
T ss_pred             eeeEecCCCCEEEEEc-CCceEEEECCCCCc
Confidence            3566666666666555 34666777765544

These proteins are found in fungi.

>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3

Probab=81.50  E-value=25  Score=28.02  Aligned_cols=135  Identities=17%  Similarity=0.292  Sum_probs=80.1

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce-----EEEEEECCCCCE--EEEee-CC---CcEEEEeCC--CC--
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF-----TLSIAYSTDGHW--IASGA-LD---GIINIFDAN--TG--   85 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~s~d~~~--l~~~~-~d---~~v~i~d~~--~~--   85 (181)
                      |...+++....++-+.+||++. +.++.+.. +..     ...+.+  .|+.  |+.++ .+   ..+++|.+.  ++  
T Consensus        66 p~kSlIigTdK~~GL~VYdL~G-k~lq~~~~-Gr~NNVDvrygf~l--~g~~vDlavas~R~~g~n~l~~f~id~~~g~L  141 (381)
T PF02333_consen   66 PAKSLIIGTDKKGGLYVYDLDG-KELQSLPV-GRPNNVDVRYGFPL--NGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL  141 (381)
T ss_dssp             GGG-EEEEEETTTEEEEEETTS--EEEEE-S-S-EEEEEEEEEEEE--TTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE
T ss_pred             cccceEEEEeCCCCEEEEcCCC-cEEEeecC-CCcceeeeecceec--CCceEEEEEEecCcCCCCeEEEEEecCCCCcc
Confidence            5667888888888999999984 44454432 221     122333  3443  33333 32   468888653  11  


Q ss_pred             -------C-----cccEEEEEE--cC-CCC-EEEEEeCCCcEEEEecC---CC----ceeeeeecCCcEEEEEEccCCCE
Q psy10953         86 -------H-----SSWVLSTAF--TR-DGK-FFISASADHTVRVWNFA---RR----ENMHTFKHADQVWCVCVAPDGDK  142 (181)
Q Consensus        86 -------~-----~~~v~~~~~--s~-~~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~v~~~~~sp~g~~  142 (181)
                             +     ...+..+++  +| +|+ +.+....+|.+.-|-+.   .+    +.++.+.....+..++......+
T Consensus       142 ~~v~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lVR~f~~~sQ~EGCVVDDe~g~  221 (381)
T PF02333_consen  142 TDVTDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLVREFKVGSQPEGCVVDDETGR  221 (381)
T ss_dssp             EE-CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEEEEEE-SS-EEEEEEETTTTE
T ss_pred             eEcCCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEEEEecCCCcceEEEEecccCC
Confidence                   0     012455554  33 455 55667788988877664   22    35667777778999999998889


Q ss_pred             EEEEcCCCcEEEEeCCC
Q psy10953        143 FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~  159 (181)
                      |+.+-++..|--|+..+
T Consensus       222 LYvgEE~~GIW~y~Aep  238 (381)
T PF02333_consen  222 LYVGEEDVGIWRYDAEP  238 (381)
T ss_dssp             EEEEETTTEEEEEESSC
T ss_pred             EEEecCccEEEEEecCC
Confidence            99999988787777764

1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.

>PRK13684 Ycf48-like protein; Provisional

Probab=81.21  E-value=24  Score=27.49  Aligned_cols=96  Identities=16%  Similarity=0.228  Sum_probs=52.5

Q ss_pred             eEEEEEECCCCCEEEEeeCCCcEEE-EeC--------CCCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee
Q psy10953         55 FTLSIAYSTDGHWIASGALDGIINI-FDA--------NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF  125 (181)
Q Consensus        55 ~~~~~~~s~d~~~l~~~~~d~~v~i-~d~--------~~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  125 (181)
                      .+..+.+.+++.+++++. .|.+.. +|.        .......+..+.+.++++.++.+. .|.+++=....+..-...
T Consensus       174 ~~~~i~~~~~g~~v~~g~-~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg~-~G~~~~~s~d~G~sW~~~  251 (334)
T PRK13684        174 VVRNLRRSPDGKYVAVSS-RGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLAR-GGQIRFNDPDDLESWSKP  251 (334)
T ss_pred             eEEEEEECCCCeEEEEeC-CceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEec-CCEEEEccCCCCCccccc
Confidence            345778888876665443 444332 221        122334678888999998776654 566543222222211111


Q ss_pred             e-----cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953        126 K-----HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus       126 ~-----~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .     ....+..+++.|+++.++ ++.++.+.
T Consensus       252 ~~~~~~~~~~l~~v~~~~~~~~~~-~G~~G~v~  283 (334)
T PRK13684        252 IIPEITNGYGYLDLAYRTPGEIWA-GGGNGTLL  283 (334)
T ss_pred             cCCccccccceeeEEEcCCCCEEE-EcCCCeEE
Confidence            1     123477889999877555 44555554

>KOG2280|consensus

Probab=80.92  E-value=37  Score=29.55  Aligned_cols=64  Identities=14%  Similarity=0.266  Sum_probs=41.2

Q ss_pred             EEEcCCCCEEEEEeCC----------CcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         17 VVFSPDDKYVLSGSQS----------GKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d----------~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ++-.|-|.-+|..=++          -.|++|++. |+++..+.. ++. ...+.|+.+.. |++...+|++++|+..
T Consensus        38 fa~Ap~gGpIAV~r~p~~~~~~~~a~~~I~If~~s-G~lL~~~~w~~~~-lI~mgWs~~ee-LI~v~k~g~v~Vy~~~  112 (829)
T KOG2280|consen   38 FACAPFGGPIAVTRSPSKLVPLYSARPYIRIFNIS-GQLLGRILWKHGE-LIGMGWSDDEE-LICVQKDGTVHVYGLL  112 (829)
T ss_pred             EEecccCCceEEEecccccccccccceeEEEEecc-ccchHHHHhcCCC-eeeecccCCce-EEEEeccceEEEeecc
Confidence            4445666666655444          247777764 555443332 344 45899998766 6667889999999974

>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118

Probab=80.22  E-value=25  Score=27.19  Aligned_cols=32  Identities=19%  Similarity=0.538  Sum_probs=26.6

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE   41 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~   41 (181)
                      ....-|.|+|+|.+.+-++....++..+||..
T Consensus        21 ~L~N~WGia~~p~~~~WVadngT~~~TlYdg~   52 (336)
T TIGR03118        21 GLRNAWGLSYRPGGPFWVANTGTGTATLYVGN   52 (336)
T ss_pred             cccccceeEecCCCCEEEecCCcceEEeecCC
Confidence            44557999999999877777788899999986

This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	181
3ow8_A	321	Crystal Structure Of The Wd Repeat-Containing Prote		1e-34
2ymu_A	577	Structure Of A Highly Repetitive Propeller Structur		7e-18
1erj_A	393	Crystal Structure Of The C-Terminal Wd40 Domain Of		1e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		2e-11
4aow_A	340	Crystal Structure Of The Human Rack1 Protein At A R		6e-04
3dm0_A	694	Maltose Binding Protein Fusion With Rack1 From A. T		2e-11
2zkq_a	317	Structure Of A Mammalian Ribosomal 40s Subunit With		2e-11
3emh_A	318	Structural Basis Of Wdr5-Mll Interaction Length = 3		5e-10
2g9a_A	311	Structural Basis For The Specific Recognition Of Me		5e-10
2h68_A	312	Histone H3 Recognition And Presentation By The Wdr5		6e-10
2g99_A	308	Structural Basis For The Specific Recognition Of Me		6e-10
3smr_A	312	Crystal Structure Of Human Wd Repeat Domain 5 With		6e-10
4a7j_A	318	Symmetric Dimethylation Of H3 Arginine 2 Is A Novel		6e-10
2h9l_A	329	Wdr5delta23 Length = 329		6e-10
3psl_A	318	Fine-Tuning The Stimulation Of Mll1 Methyltransfera		6e-10
2h9m_A	313	Wdr5 In Complex With Unmodified H3k4 Peptide Length		6e-10
2h13_A	317	Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length		6e-10
2xl2_A	334	Wdr5 In Complex With An Rbbp5 Peptide Recruited To		6e-10
2gnq_A	336	Structure Of Wdr5 Length = 336		7e-10
3n0e_A	315	Crystal Structure Of Wdr5 Mutant (W330y) Length = 3		7e-10
3n0d_A	315	Crystal Structure Of Wdr5 Mutant (W330f) Length = 3		7e-10
3mxx_A	315	Crystal Structure Of Wdr5 Mutant (S62a) Length = 31		8e-10
2cnx_A	315	Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.		3e-09
2co0_A	315	Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs		9e-09
3iza_B	1263	Structure Of An Apoptosome-Procaspase-9 Card Comple		1e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		4e-08
3zey_7	318	High-resolution Cryo-electron Microscopy Structure		5e-08
3sfz_A	1249	Crystal Structure Of Full-Length Murine Apaf-1 Leng		7e-08
3shf_A	1256	Crystal Structure Of The R265s Mutant Of Full-Lengt		7e-08
2pbi_B	354	The Multifunctional Nature Of Gbeta5RGS9 REVEALED F		1e-07
1got_B	340	Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimer		1e-07
1a0r_B	340	Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-		1e-07
1vyh_C	410	Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410		2e-07
1gg2_B	340	G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Bet		3e-07
3sn6_B	351	Crystal Structure Of The Beta2 Adrenergic Receptor-		3e-07
2bcj_B	340	Crystal Structure Of G Protein-coupled Receptor Kin		3e-07
2yno_A	310	Yeast Betaprime Cop 1-304h6 Length = 310		4e-07
2ynn_A	304	Yeast Betaprime Cop 1-304 With Ktktn Motif Length =		4e-07
1nr0_A	611	Two Seven-Bladed Beta-Propeller Domains Revealed By		5e-07
2ovp_B	445	Structure Of The Skp1-Fbw7 Complex Length = 445		6e-07
2ynp_A	604	Yeast Betaprime Cop 1-604 With Ktktn Motif Length =		9e-07
3mkq_A	814	Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subco		1e-06
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-05
3izb_a	319	Localization Of The Small Subunit Ribosomal Protein		4e-04
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		5e-05
1trj_A	314	Homology Model Of Yeast Rack1 Protein Fitted Into 1		4e-04
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		5e-05
3jyv_R	313	Structure Of The 40s Rrna And Proteins And PE TRNA		4e-04
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfg_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-04
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		5e-05
3rfh_A	319	Crystal Structure Of The Yeast Rack1 Dimer In Space		4e-04
1p22_A	435	Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex		9e-05
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		2e-04
3frx_A	319	Crystal Structure Of The Yeast Orthologue Of Rack1,		4e-04
2xzm_R	343	Crystal Structure Of The Eukaryotic 40s Ribosomal S		4e-04
3mks_B	464	Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH		7e-04
1gxr_A	337	Wd40 Region Of Human Groucho/tle1 Length = 337		8e-04
3iz6_a	380	Localization Of The Small Subunit Ribosomal Protein		9e-04

>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61 Length = 321

Iteration: 1
 Score =  142 bits (358), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 86/205 (41%), Positives = 113/205 (55%), Gaps = 51/205 (24%)
Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           KQI  I+ GPVD W + FSPD +Y+ +G+  GK+N++GVE+GK E   DTRGKF LSIAY
Sbjct: 113 KQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAY 172
Query: 62  STDGHWIASGALDGIINIFDANT------------------------------------- 84
           S DG ++ASGA+DGIINIFD  T                                     
Sbjct: 173 SPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKI 232
Query: 85  -------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQ 130
                        GH+SWVL+ AF  D   F+S+S+D +V+VW+   R  +HT F H DQ
Sbjct: 233 YDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQ 292
Query: 131 VWCVCVAPDGDKFVSVGEDKAVHMY 155
           VW V    +G K VSVG+D+ +H+Y
Sbjct: 293 VWGVKYNGNGSKIVSVGDDQEIHIY 317

>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577

Iteration: 1
 Score = 86.7 bits (213), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 51/149 (34%), Positives = 73/149 (48%), Gaps = 8/149 (5%)
Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
           +W V FSPDD+ + S S    + L+    G+L Q           +A+S DG  IAS + 
Sbjct: 429 VWGVAFSPDDQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVRGVAFSPDGQTIASASD 487
Query: 74  DGIINIFDAN-------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
           D  + +++ N       TGHSS V   AF+ DG+   SAS D TV++WN   +       
Sbjct: 488 DKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTG 547
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
           H+  VW V  +PDG    S   DK V ++
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLW 576

>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393

Iteration: 1
 Score = 65.5 bits (158), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 46/159 (28%), Positives = 72/159 (45%), Gaps = 16/159 (10%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +V FSPD K++ +G++   I ++ +E  K+  I     +   S+ Y   G  + SG+ D 
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDR 187
Query: 76  IINIFDANTGHSSWVLS--------TAFTRDGKFFISASADHTVRVWN-----FARR--- 119
            + I+D  TG  S  LS             DGK+  + S D  VRVW+        R   
Sbjct: 188 TVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDS 247
Query: 120 ENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
           EN     H D V+ V    DG   VS   D++V +++ +
Sbjct: 248 ENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 286

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +VV S D ++ LSGS  G + L+ + TG   + F    K  LS+A+S+D   I SG+ D 
Sbjct: 91  DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 150
Query: 76  IINIFDA---------NTGHSSWVLSTAFTRDGK--FFISASADHTVRVWNFAR-RENMH 123
            I +++          +  HS WV    F+ +      +S   D  V+VWN A  +   +
Sbjct: 151 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 210
Query: 124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
              H   +  V V+PDG    S G+D    ++
Sbjct: 211 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242

>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A Resolution Of 2.45 Angstrom Length = 340

Iteration: 1
 Score = 40.4 bits (93), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 22/73 (30%), Positives = 35/73 (47%), Gaps = 1/73 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS +V     + DG+F +S S D T+R+W+         F  H   V  V  + D  + 
Sbjct: 84  GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 144 VSVGEDKAVHMYS 156
           VS   DK + +++
Sbjct: 144 VSGSRDKTIKLWN 156

>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana Length = 694

Iteration: 1
 Score = 51.6 bits (122), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 21/162 (12%)
Query: 11  PVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA 69
           P+D  +++ S   DK ++    +     YGV   +L         F   +  S+DG +  
Sbjct: 391 PIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG----HSHFVEDVVLSSDGQFAL 446
Query: 70  SGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN 121
           SG+ DG + ++D           GH+  VLS AF+ D +  +SAS D T+++WN    E 
Sbjct: 447 SGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWN-TLGEC 505
Query: 122 MHTFK-----HADQVWCVCVAPDGDK--FVSVGEDKAVHMYS 156
            +T       H D V CV  +P+  +   VS   DK V +++
Sbjct: 506 KYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWN 547

>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An 80s Complex Obtained By Docking Homology Models Of The Rna And Proteins Into An 8.7 A Cryo-Em Map Length = 317

Iteration: 1
 Score = 65.1 bits (157), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 45/152 (29%), Positives = 71/152 (46%), Gaps = 12/152 (7%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +VV S D ++ LSGS  G + L+ + TG   + F    K  LS+A+S+D   I SG+ D 
Sbjct: 68  DVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDK 127
Query: 76  IINIFDA---------NTGHSSWVLSTAFTRDGK--FFISASADHTVRVWNFAR-RENMH 123
            I +++          +  HS WV    F+ +      +S   D  V+VWN A  +   +
Sbjct: 128 TIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTN 187
Query: 124 TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
              H   +  V V+PDG    S G+D    ++
Sbjct: 188 HIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219

>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311

Iteration: 1
 Score = 60.5 bits (145), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 114 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 233
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 234 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 266

>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 111 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 170
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 171 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 230
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 231 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 263

>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312

Iteration: 1
 Score = 60.5 bits (145), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 115 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 174
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 175 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 234
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 235 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 267

>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2H9L|A Chain A, Wdr5delta23 Length = 329

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 132 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 191
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 192 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 251
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 252 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 284

>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 121 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 180
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 181 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 240
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 241 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 273

>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 116 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 175
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 176 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 235
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 236 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 268

>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 120 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 179
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 180 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 239
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 240 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 272

>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334

Iteration: 1
 Score = 60.1 bits (144), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 137 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 196
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 197 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 256
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 257 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 289

>pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 139 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 198
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 199 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 258
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 259 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 291

>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315

Iteration: 1
 Score = 60.1 bits (144), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315

Iteration: 1
 Score = 59.7 bits (143), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 77/153 (50%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TGK  +          ++ ++ DG  I S + DG+  
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ 270

>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315

Iteration: 1
 Score = 57.8 bits (138), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 34/153 (22%), Positives = 76/153 (49%), Gaps = 13/153 (8%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
           F+P    ++SGS    + ++ V+TG   +          ++ ++ DG  I S + DG+  
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCR 177
Query: 79  IFDANTGHSSWVLS---------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA 128
           I+D  +G     L            F+ +GK+ ++A+ D+T+++W++++ + + T+  H 
Sbjct: 178 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHK 237
Query: 129 DQVWCVCV---APDGDKFVSVGEDKAVHMYSYK 158
           ++ +C+        G   VS  ED  V++++ +
Sbjct: 238 NEKYCIFANFSVTGGKWIVSGSEDNMVYIWNLQ 270

>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315

Iteration: 1
 Score = 56.2 bits (134), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 67/149 (44%), Gaps = 9/149 (6%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +V FSP+ +++ S S    I ++G   GK E+           +A+S+D + + S + D 
Sbjct: 31  SVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDK 90
Query: 76  IINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
            + I+D ++        GHS++V    F       +S S D +VR+W+      + T   
Sbjct: 91  TLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
           H+D V  V    DG   VS   D    ++
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIW 179

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 33/140 (23%), Positives = 66/140 (47%), Gaps = 15/140 (10%)
Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-----LSIAYSTDGHW 67
           D+ +V FSPD++ ++SG +   + ++ V+   +  +  +RG  T     +  + S D   
Sbjct: 111 DVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTL--SRGAHTDWVSCVRFSPSLDAPV 168
Query: 68  IASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR 119
           I SG  D ++ ++D  TG        H+++V S   + DG    S+  D   R+W+  + 
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTKG 228
Query: 120 ENMHTFKHADQVWCVCVAPD 139
           E +        +  +C +P+
Sbjct: 229 EALSEMAAGAPINQICFSPN 248

>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The Trypanosoma Brucei Ribosome Length = 318

Iteration: 1
 Score = 53.9 bits (128), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/75 (36%), Positives = 43/75 (57%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS++V   A + +G F +SAS DH++R+WN    +  + F  H   V  V  +PD  + 
Sbjct: 65  GHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI 124
Query: 144 VSVGEDKAVHMYSYK 158
           VS G D A+ +++ K
Sbjct: 125 VSGGRDNALRVWNVK 139

>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1 Length = 1249

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 1   MKQISKINVGPVD--MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--T 56
           +K +S++ V P    +++  FS D + + S      + ++  ETG  E++ D +      
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEV 660
Query: 57  LSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISA--S 106
           L  A+S+D  +IA+ + D  + I+D+ TG        HS  V    FT      + A  S
Sbjct: 661 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 720
Query: 107 ADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
            D  +++W+  ++E  +T F H + V     +PD +   S   D  + ++  +
Sbjct: 721 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 773

>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine Apaf-1 Length = 1256

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 80/173 (46%), Gaps = 17/173 (9%)
Query: 1   MKQISKINVGPVD--MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF--T 56
           +K +S++ V P    +++  FS D + + S      + ++  ETG  E++ D +      
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETG--EKLLDIKAHEDEV 667
Query: 57  LSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISA--S 106
           L  A+S+D  +IA+ + D  + I+D+ TG        HS  V    FT      + A  S
Sbjct: 668 LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGS 727
Query: 107 ADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
            D  +++W+  ++E  +T F H + V     +PD +   S   D  + ++  +
Sbjct: 728 NDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVR 780

>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS CRYSTAL Structure Length = 354

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/154 (25%), Positives = 71/154 (46%), Gaps = 17/154 (11%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI-- 79
           D + ++S SQ GK+ ++   T   E        + ++ AY+  G  IA G LD   ++  
Sbjct: 75  DKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP 134
Query: 80  --FDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
             FD N            H++++ + +FT      ++AS D T  +W+    + + +F  
Sbjct: 135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHG 194
Query: 127 HADQVWCVCVAPD--GDKFVSVGEDKAVHMYSYK 158
           H   V C+ +AP   G+ FVS G DK   ++  +
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR 228

>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And The Gt-Beta-Gamma Subunits Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
           D + +LS SQ GK+ ++   T         R  + ++ AY+  G+++A G LD I +I++
Sbjct: 66  DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82  ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
             T            GH+ ++    F  D +  +++S D T  +W+    ++      H 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
             V  + +APD   FVS   D +  ++  + 
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma Length = 340

Iteration: 1
 Score = 52.8 bits (125), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
           D + +LS SQ GK+ ++   T         R  + ++ AY+  G+++A G LD I +I++
Sbjct: 66  DSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82  ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
             T            GH+ ++    F  D +  +++S D T  +W+    ++      H 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
             V  + +APD   FVS   D +  ++  + 
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2 Length = 410

Iteration: 1
 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 68  IASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR 119
           + S + D  I ++D  TG        H+  V   +F   GK   S SAD T+++W+F   
Sbjct: 123 MVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 120 ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
           E + T   H   V  V + P+GD  VS   DK + M+  +
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQ 222

>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1 Gamma_2 With Gdp Bound Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
           D + ++S SQ GK+ ++   T         R  + ++ AY+  G+++A G LD I +I++
Sbjct: 66  DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82  ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
             T            GH+ ++    F  D +  +++S D T  +W+    ++      H 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
             V  + +APD   FVS   D +  ++  + 
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs Protein Complex Length = 351

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
           D + ++S SQ GK+ ++   T         R  + ++ AY+  G+++A G LD I +I++
Sbjct: 77  DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 136
Query: 82  ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
             T            GH+ ++    F  D +  +++S D T  +W+    ++      H 
Sbjct: 137 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 195
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
             V  + +APD   FVS   D +  ++  + 
Sbjct: 196 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 226

>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2 In Complex With Galpha-q And Gbetagamma Subunits Length = 340

Iteration: 1
 Score = 51.2 bits (121), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 35/151 (23%), Positives = 68/151 (45%), Gaps = 14/151 (9%)
Query: 22  DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD 81
           D + ++S SQ GK+ ++   T         R  + ++ AY+  G+++A G LD I +I++
Sbjct: 66  DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYN 125
Query: 82  ANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNF-ARRENMHTFKHA 128
             T            GH+ ++    F  D +  +++S D T  +W+    ++      H 
Sbjct: 126 LKTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHT 184
Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP 159
             V  + +APD   FVS   D +  ++  + 
Sbjct: 185 GDVMSLSLAPDTRLFVSGACDASAKLWDVRE 215

>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6 Length = 310

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYST-DGHWIASGAL 73
           ++   P   YVLSGS    + L+  E    LEQ F+    F + +A++  D    ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74  DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
           D  + ++       ++ L+T   R           D  + I+AS D T+++W++  +  +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            T + H   V      P     +S  ED  + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif Length = 304

Iteration: 1
 Score = 50.8 bits (120), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYST-DGHWIASGAL 73
           ++   P   YVLSGS    + L+  E    LEQ F+    F + +A++  D    ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74  DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
           D  + ++       ++ L+T   R           D  + I+AS D T+++W++  +  +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            T + H   V      P     +S  ED  + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The Structure Of A C. Elegans Homologue Of Yeast Actin Interacting Protein 1 (Aip1). Length = 611

Iteration: 1
 Score = 50.4 bits (119), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 53/120 (44%), Gaps = 16/120 (13%)
Query: 14  MWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
           M +V F P   + ++SGS    + ++     K +  F    KF  S+ Y+ DG   AS  
Sbjct: 150 MNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTG 209
Query: 73  LDGIINIFDA---------------NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA 117
            DG I +++                N  HS  V    ++ DG    SASAD T+++WN A
Sbjct: 210 GDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVA 269

>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex Length = 445

Iteration: 1
 Score = 50.1 bits (118), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 54/111 (48%), Gaps = 12/111 (10%)
Query: 23  DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA 82
           +K V+SGS+   + ++ +ETG+   +          + Y  DG  + SGA D ++ ++D 
Sbjct: 209 EKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDP 266
Query: 83  NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF 125
            T        GH++ V S  F  DG   +S S D ++RVW+      +HT 
Sbjct: 267 ETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTL 315

>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif Length = 604

Iteration: 1
 Score = 49.7 bits (117), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYS-TDGHWIASGAL 73
           ++   P   YVLSGS    + L+  E    LEQ F+    F + +A++  D    ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74  DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
           D  + ++       ++ L+T   R           D  + I+AS D T+++W++  +  +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            T + H   V      P     +S  ED  + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex Of The Copi Vesicular Coat Length = 814

Iteration: 1
 Score = 49.3 bits (116), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 68/155 (43%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYS-TDGHWIASGAL 73
           ++   P   YVLSGS    + L+  E    LEQ F+    F + +A++  D    ASG L
Sbjct: 102 SIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCL 161
Query: 74  DGIINIFDANTGHSSWVLSTAFTR-----------DGKFFISASADHTVRVWNFARRENM 122
           D  + ++       ++ L+T   R           D  + I+AS D T+++W++  +  +
Sbjct: 162 DRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCV 221
Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
            T + H   V      P     +S  ED  + +++
Sbjct: 222 ATLEGHMSNVSFAVFHPTLPIIISGSEDGTLKIWN 256

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F       +S+        I SG+ D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae Translating 80s Ribosome Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F       +S+        I SG+ D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a Cryo-em Map Of Yeast 80s Ribosome Length = 314

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F       +S+        I SG+ D 
Sbjct: 64  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 123
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 124 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 183
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 184 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 218

>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces Lanuginosus Ribosome At 8.9a Resolution Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 57  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 116
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 117 ISGSRDKTIKVWTIK 131

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F       +S+        I SG+ D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P63 Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 43.9 bits (102), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 60/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F       +S+        I SG+ D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDK 129
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWN 224

>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group P21 Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMI 122
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137

>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex: Destruction Motif Binding And Lysine Specificity On The Scfbeta-Trcp1 Ubiquitin Ligase Length = 435

Iteration: 1
 Score = 43.1 bits (100), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 46/109 (42%), Gaps = 17/109 (15%)
Query: 23  DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI--- 79
           D+ V+SGS    I L+ +E G   ++ +   +    I +  D   I SGA DG I +   
Sbjct: 306 DRLVVSGSSDNTIRLWDIECGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDL 363
Query: 80  ---FDANTGHSSWVLSTAFTRDGKFF---------ISASADHTVRVWNF 116
               D      +  L T     G+ F         +S+S D T+ +W+F
Sbjct: 364 VAALDPRAPAGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIWDF 412

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 42.4 bits (98), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/155 (23%), Positives = 59/155 (38%), Gaps = 14/155 (9%)
Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
           +   + D  Y LS S    + L+ V TG+  Q F        S+        I SG+ D 
Sbjct: 70  DCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDK 129
Query: 76  IINIFDAN-------TGHSSWVLSTAFTRDGKF------FISASADHTVRVWNFARRENM 122
            I ++           GH+ WV       + K        ISA  D  V+ WN  + +  
Sbjct: 130 TIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIE 189
Query: 123 HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
             F  H   +  +  +PDG    S G+D  + +++
Sbjct: 190 ADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWN 224

>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1. Length = 319

Iteration: 1
 Score = 40.8 bits (94), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 1/75 (1%)
Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF 143
           GHS  V     T DG + +SAS D T+R+W+ A  E    F  H   V  V +       
Sbjct: 63  GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 144 VSVGEDKAVHMYSYK 158
           +S   DK + +++ K
Sbjct: 123 ISGSRDKTIKVWTIK 137

>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit In Complex With Initiation Factor 1. This File Contains The 40s Subunit And Initiation Factor For Molecule 1 Length = 343

Iteration: 1
 Score = 41.2 bits (95), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 46/100 (46%), Gaps = 21/100 (21%)
Query: 55  FTLSIAYSTDGHWIASGALDGIINIFDANTG--------HSSWVLSTAFTRDGKFFISAS 106
           F   +A S +  +  S + D  + ++D  TG        H S V S AF+ D +  +SA 
Sbjct: 78  FVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAG 137
Query: 107 ADHTVRVWNF--------ARRENMHTFKHADQVWCVCVAP 138
           A+  +++WN         A +EN     H+D V CV  +P
Sbjct: 138 AEREIKLWNILGECKFSSAEKEN-----HSDWVSCVRYSP 172

>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN ALLOSTERIC Inhibitor Scf-I2 Length = 464

Iteration: 1
 Score = 40.0 bits (92), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 8/83 (9%)
Query: 52  RGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFFI 103
           RG        S  G+ + SG+ D  + ++D          +GH+  + ST +  + K  I
Sbjct: 267 RGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCI 326
Query: 104 SASADHTVRVWNFARRENMHTFK 126
           SAS D T+R+W+    E M+T +
Sbjct: 327 SASMDTTIRIWDLENGELMYTLQ 349

>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1 Length = 337

Iteration: 1
 Score = 40.0 bits (92), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 34/145 (23%), Positives = 57/145 (39%), Gaps = 10/145 (6%)
Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
            S D   + +G     +  + +  G+  Q  D   +   S+ Y   G W+A G     + 
Sbjct: 191 ISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQI-FSLGYCPTGEWLAVGMESSNVE 249
Query: 79  IFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQV 131
           +   N         H S VLS  F   GK+F+S   D+ +  W      ++   K +  V
Sbjct: 250 VLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSV 309
Query: 132 WCVCVAPDGDKFVSVGE-DKAVHMY 155
               ++ D DK++  G  DK   +Y
Sbjct: 310 LSCDISVD-DKYIVTGSGDKKATVY 333

>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s Ribosome Length = 380

Iteration: 1
 Score = 39.7 bits (91), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 27/124 (21%), Positives = 50/124 (40%), Gaps = 19/124 (15%)
Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-------DTRGKFTLSIAYSTDG 65
           D+ +V F PD +   +GS  G   L+ + TG   Q++       D       S+A+S  G
Sbjct: 251 DINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISG 310
Query: 66  HWIASGALDG------------IINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRV 113
             + +G  +G            ++N+      H   +     + DG    + S D  +++
Sbjct: 311 RLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKI 370
Query: 114 WNFA 117
           W F+
Sbjct: 371 WAFS 374

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	181
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.98
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.98
3ow8_A	321	WD repeat-containing protein 61; structural genomi	99.98
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.97
2ynn_A	304	Coatomer subunit beta'; protein transport, peptide	99.97
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
1got_B	340	GT-beta; complex (GTP-binding/transducer), G prote	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.97
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.97
1vyh_C	410	Platelet-activating factor acetylhydrolase IB alph	99.97
4ery_A	312	WD repeat-containing protein 5; WD40, WIN motif, b	99.97
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.97
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.97
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.97
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.97
2pbi_B	354	Guanine nucleotide-binding protein subunit beta 5;	99.97
4gqb_B	344	Methylosome protein 50; TIM barrel, beta-propeller	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
2hes_X	330	YDR267CP; beta-propeller, WD40 repeat, biosyntheti	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
1nr0_A	611	Actin interacting protein 1; beta propeller, WD40	99.96
3fm0_A	345	Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD r	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
1erj_A	393	Transcriptional repressor TUP1; beta-propeller, tr	99.96
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.96
3iz6_a	380	40S ribosomal protein RACK1 (RACK1); eukaryotic ri	99.96
3frx_A	319	Guanine nucleotide-binding protein subunit beta- l	99.96
2pm7_B	297	Protein transport protein SEC13, protein transport	99.96
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.96
2ymu_A	577	WD-40 repeat protein; unknown function, two domain	99.95
2xzm_R	343	RACK1; ribosome, translation; 3.93A {Tetrahymena t	99.95
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.95
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.95
1gxr_A	337	ESG1, transducin-like enhancer protein 1; transcri	99.95
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.95
3dwl_C	377	Actin-related protein 2/3 complex subunit 1; prope	99.95
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.95
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.95
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.95
4g56_B	357	MGC81050 protein; protein arginine methyltransfera	99.95
3f3f_A	351	Nucleoporin SEH1; structural protein, protein comp	99.95
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
3zwl_B	369	Eukaryotic translation initiation factor 3 subuni;	99.94
4e54_B	435	DNA damage-binding protein 2; beta barrel, double	99.94
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.94
1k8k_C	372	P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-	99.94
3vl1_A	420	26S proteasome regulatory subunit RPN14; beta-prop	99.94
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.94
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.94
4aow_A	340	Guanine nucleotide-binding protein subunit beta-2;	99.94
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.94
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.94
3bg1_A	316	Protein SEC13 homolog; NPC, transport, WD repeat,	99.94
3dm0_A	694	Maltose-binding periplasmic protein fused with RAC	99.94
3ei3_B	383	DNA damage-binding protein 2; UV-damage, DDB, nucl	99.94
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.94
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.94
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.94
3jrp_A	379	Fusion protein of protein transport protein SEC13	99.94
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.94
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.94
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.94
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.93
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.93
3dw8_B	447	Serine/threonine-protein phosphatase 2A 55 kDa RE	99.93
4aez_A	401	CDC20, WD repeat-containing protein SLP1; cell cyc	99.93
2aq5_A	402	Coronin-1A; WD40 repeat, 7-bladed beta-propeller,	99.93
1r5m_A	425	SIR4-interacting protein SIF2; transcription corep	99.93
2oaj_A	902	Protein SNI1; WD40 repeat, beta propeller, endocyt	99.93
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.93
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	99.93
1sq9_A	397	Antiviral protein SKI8; WD repeat, beta-transducin	99.93
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.93
2j04_A	588	TAU60, YPL007P, hypothetical protein YPL007C; beta	99.93
3k26_A	366	Polycomb protein EED; WD40, structural genomics, N	99.93
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.93
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
2j04_B	524	YDR362CP, TAU91; beta propeller, type 2 promoters,	99.92
2pm9_A	416	Protein WEB1, protein transport protein SEC31; bet	99.92
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
3gre_A	437	Serine/threonine-protein kinase VPS15; seven-blade	99.92
3i2n_A	357	WD repeat-containing protein 92; WD40 repeats, str	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
2xyi_A	430	Probable histone-binding protein CAF1; transcripti	99.92
3sfz_A	1249	APAF-1, apoptotic peptidase activating factor 1; a	99.92
4a11_B	408	DNA excision repair protein ERCC-8; DNA binding pr	99.92
1yfq_A	342	Cell cycle arrest protein BUB3; WD repeat WD40 rep	99.92
3jro_A	753	Fusion protein of protein transport protein SEC13	99.92
3odt_A	313	Protein DOA1; ubiquitin, nuclear protein; HET: MSE	99.92
3mmy_A	368	MRNA export factor; mRNA export, nuclear protein;	99.92
3lrv_A	343	PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiqu	99.91
2vdu_B	450	TRNA (guanine-N(7)-)-methyltransferase- associated	99.91
4gga_A	420	P55CDC, cell division cycle protein 20 homolog; ce	99.91
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.91
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.91
1pgu_A	615	Actin interacting protein 1; WD repeat, seven-blad	99.91
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	99.91
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
1l0q_A	391	Surface layer protein; SLP, S-layer, 7-bladed beta	99.9
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.9
4gq1_A	393	NUP37; propeller, transport protein; 2.40A {Schizo	99.89
4ggc_A	318	P55CDC, cell division cycle protein 20 homolog; ce	99.89
3vu4_A	355	KMHSV2; beta-propeller fold, protein transport; 2.	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	99.88
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.88
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	99.88
2w18_A	356	PALB2, fancn, partner and localizer of BRCA2; fanc	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.88
3bws_A	433	Protein LP49; two-domain, immunoglobulin-like, 7-b	99.87
4h5i_A	365	Guanine nucleotide-exchange factor SEC12; copii ve	99.87
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2oit_A	434	Nucleoporin 214KDA; NH2 terminal domain of NUP214/	99.86
2hqs_A	415	Protein TOLB; TOLB, PAL, TOL, transport protein-li	99.85
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.82
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.81
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.8
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.79
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
3u4y_A	331	Uncharacterized protein; structural genomics, PSI-	99.78
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.77
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.76
3vgz_A	353	Uncharacterized protein YNCE; beta-propeller, prot	99.75
1ri6_A	343	Putative isomerase YBHE; 7-bladed propeller, enzym	99.75
2ecf_A	741	Dipeptidyl peptidase IV; prolyl oligopeptidase fam	99.74
2ojh_A	297	Uncharacterized protein ATU1656/AGR_C_3050; TOLB,	99.74
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.74
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.74
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.74
1xfd_A	723	DIP, dipeptidyl aminopeptidase-like protein 6, dip	99.74
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.74
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.73
2z3z_A	706	Dipeptidyl aminopeptidase IV; peptidase family S9,	99.73
1nir_A	543	Nitrite reductase; hemoprotein, denitrification, d	99.73
3hfq_A	347	Uncharacterized protein LP_2219; Q88V64_lacpl, NES	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
1k32_A	1045	Tricorn protease; protein degradation, substrate g	99.72
1jmx_B	349	Amine dehydrogenase; oxidoreductase; HET: TRQ HEC;	99.7
1pby_B	337	Quinohemoprotein amine dehydrogenase 40 kDa subuni	99.7
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.69
1z68_A	719	Fibroblast activation protein, alpha subunit; sepr	99.68
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.68
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.67
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.67
3scy_A	361	Hypothetical bacterial 6-phosphogluconolactonase;	99.66
3o4h_A	582	Acylamino-acid-releasing enzyme; alpha/beta hydrol	99.65
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.65
1jof_A	365	Carboxy-CIS,CIS-muconate cyclase; beta-propeller,	99.65
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.64
3azo_A	662	Aminopeptidase; POP family, hydrolase; 2.00A {Stre	99.64
4a5s_A	740	Dipeptidyl peptidase 4 soluble form; hydrolase, ty	99.62
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.62
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.61
3pe7_A	388	Oligogalacturonate lyase; seven-bladed beta-propel	99.6
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.59
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.57
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.53
3fvz_A	329	Peptidyl-glycine alpha-amidating monooxygenase; be	99.53
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.52
1q7f_A	286	NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL	99.52
3c5m_A	396	Oligogalacturonate lyase; blade-shaped beta-propel	99.5
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.5
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.49
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.47
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.45
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.45
3e5z_A	296	Putative gluconolactonase; X-RAY NESG Q9RXN3 gluco	99.44
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.43
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.42
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.42
3no2_A	276	Uncharacterized protein; six-bladed beta-propeller	99.4
2dg1_A	333	DRP35, lactonase; beta propeller, hydrolase; 1.72A	99.39
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.39
1rwi_B	270	Serine/threonine-protein kinase PKND; beta propell	99.38
2xdw_A	710	Prolyl endopeptidase; alpha/beta-hydrolase, amnesi	99.37
2bkl_A	695	Prolyl endopeptidase; mechanistic study, celiac sp	99.36
1xip_A	388	Nucleoporin NUP159; beta-propeller, transport prot	99.36
2oiz_A	361	Aromatic amine dehydrogenase, large subunit; oxido	99.35
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	99.33
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	99.33
3dsm_A	328	Uncharacterized protein bacuni_02894; seven_blated	99.3
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	99.3
2gop_A	347	Trilobed protease; beta propeller, open velcro, hy	99.28
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.27
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.25
1qks_A	567	Cytochrome CD1 nitrite reductase; enzyme, oxidored	99.23
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.21
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.21
2z2n_A	299	Virginiamycin B lyase; seven-bladed beta-propeller	99.21
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
3hrp_A	409	Uncharacterized protein; NP_812590.1, structural g	99.19
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	99.18
1pjx_A	314	Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotries	99.15
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.15
3g4e_A	297	Regucalcin; six bladed beta-propeller, gluconolcat	99.14
2mad_H	373	Methylamine dehydrogenase (heavy subunit); oxidore	99.13
1yr2_A	741	Prolyl oligopeptidase; prolyl endopeptidase, mecha	99.13
3sjl_D	386	Methylamine dehydrogenase heavy chain; MAUG, C-hem	99.13
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.1
2qc5_A	300	Streptogramin B lactonase; beta propeller, lyase;	99.1
2qe8_A	343	Uncharacterized protein; structural genomics, join	99.03
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	99.02
2ghs_A	326	AGR_C_1268P; regucalcin, structural genomics, join	99.01
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.99
3c75_H	426	MADH, methylamine dehydrogenase heavy chain; coppe	98.99
3dr2_A	305	Exported gluconolactonase; gluconolactonase SMP-30	98.95
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.94
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.92
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.91
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.89
2qe8_A	343	Uncharacterized protein; structural genomics, join	98.88
3iuj_A	693	Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas	98.87
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.86
1fwx_A	595	Nitrous oxide reductase; beta-propeller domain, cu	98.84
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.84
2hz6_A	369	Endoplasmic reticulum to nucleus signalling 1 isof	98.81
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.78
2iwa_A	266	Glutamine cyclotransferase; pyroglutamate, acyltra	98.78
1npe_A	267	Nidogen, entactin; glycoprotein, basement membrane	98.75
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.74
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.72
2ece_A	462	462AA long hypothetical selenium-binding protein;	98.71
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.7
3nol_A	262	Glutamine cyclotransferase; beta-propeller, glutam	98.69
3nok_A	268	Glutaminyl cyclase; beta-propeller, cyclotransfera	98.62
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	98.56
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	98.54
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	98.5
3mbr_X	243	Glutamine cyclotransferase; beta-propeller; 1.44A	98.46
2fp8_A	322	Strictosidine synthase; six bladed beta propeller	98.44
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.42
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.41
3v65_B	386	Low-density lipoprotein receptor-related protein;	98.37
3kya_A	496	Putative phosphatase; structural genomics, joint c	98.37
1mda_H	368	Methylamine dehydrogenase (heavy subunit); electro	98.35
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.34
1kb0_A	677	Quinohemoprotein alcohol dehydrogenase; beta-prope	98.33
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	98.32
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.32
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	98.3
2p4o_A	306	Hypothetical protein; putative lactonase, structur	98.29
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	98.25
1yiq_A	689	Quinohemoprotein alcohol dehydrogenase; electron t	98.21
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.21
3q7m_A	376	Lipoprotein YFGL, BAMB; beta-propeller, BAM comple	98.18
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	98.18
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	98.14
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	98.11
3v64_C	349	Agrin; beta propeller, laminin-G, signaling, prote	98.08
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.06
1ijq_A	316	LDL receptor, low-density lipoprotein receptor; be	98.05
3tc9_A	430	Hypothetical hydrolase; 6-bladed beta-propeller, i	98.04
4hw6_A	433	Hypothetical protein, IPT/TIG domain protein; puta	98.03
3qqz_A	255	Putative uncharacterized protein YJIK; MCSG, PSI-2	98.0
1kv9_A	668	Type II quinohemoprotein alcohol dehydrogenase; el	97.97
3hxj_A	330	Pyrrolo-quinoline quinone; all beta protein. incom	97.96
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.96
3v65_B	386	Low-density lipoprotein receptor-related protein;	97.95
2xe4_A	751	Oligopeptidase B; hydrolase-inhibitor complex, hyd	97.95
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	97.94
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	97.93
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	97.92
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.91
3sov_A	318	LRP-6, low-density lipoprotein receptor-related pr	97.88
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	97.87
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.86
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	97.85
3kya_A	496	Putative phosphatase; structural genomics, joint c	97.82
3p5b_L	400	Low density lipoprotein receptor variant; B-propel	97.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	97.77
4a2l_A	795	BT_4663, two-component system sensor histidine kin	97.76
2ad6_A	571	Methanol dehydrogenase subunit 1; PQQ configuratio	97.74
2p9w_A	334	MAL S 1 allergenic protein; beta propeller; 1.35A	97.73
1flg_A	582	Protein (quinoprotein ethanol dehydrogenase); supe	97.71
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	97.7
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	97.69
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.67
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	97.63
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.59
3m0c_C	791	LDL receptor, low-density lipoprotein receptor; pr	97.55
1n7d_A	699	LDL receptor, low-density lipoprotein receptor; fa	97.52
1w6s_A	599	Methanol dehydrogenase subunit 1; anisotropic, ele	97.51
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.36
3v9f_A	781	Two-component system sensor histidine kinase/RESP	97.26
3s94_A	619	LRP-6, low-density lipoprotein receptor-related pr	97.21
1k3i_A	656	Galactose oxidase precursor; blade beta propeller,	97.08
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	97.0
4a0p_A	628	LRP6, LRP-6, low-density lipoprotein receptor-rela	96.94
3v9f_A	781	Two-component system sensor histidine kinase/RESP	96.93
3sre_A	355	PON1, serum paraoxonase; directed evolution, 6-bla	96.8
3pbp_A	452	Nucleoporin NUP82; beta-propeller, mRNA export, mR	96.8
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.79
1tl2_A	236	L10, protein (tachylectin-2); animal lectin, horse	96.67
3amr_A	355	3-phytase; beta-propeller, phytate, MYO-inositol h	96.6
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	96.54
3s25_A	302	Hypothetical 7-bladed beta-propeller-like protein;	96.51
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	96.47
2xbg_A	327	YCF48-like protein; photosynthesis, photosystem II	96.47
2ism_A	352	Putative oxidoreductase; BL41XU spring-8, bladed b	96.29
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	96.19
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.81
3ii7_A	306	Kelch-like protein 7; protein-binding, kelch-repea	95.72
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	95.67
1cru_A	454	Protein (soluble quinoprotein glucose dehydrogena;	95.67
2vpj_A	301	Kelch-like protein 12; adaptor protein, WNT signal	95.63
2xn4_A	302	Kelch-like protein 2; structural protein, cytoskel	95.32
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	95.28
2g8s_A	353	Glucose/sorbosone dehydrogenases; bladed beta-prop	95.14
3das_A	347	Putative oxidoreductase; aldose sugar dehydrogenas	95.12
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	95.01
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	94.86
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	94.78
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	94.66
1zgk_A	308	Kelch-like ECH-associated protein 1; beta-propelle	94.48
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	94.0
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	93.97
4asc_A	315	Kelch repeat and BTB domain-containing protein 5;	93.86
1bpo_A	494	Protein (clathrin); clathrin endocytosis beta-prop	93.6
2woz_A	318	Kelch repeat and BTB domain-containing protein 10;	93.29
2be1_A	339	Serine/threonine-protein kinase/endoribonuclease;	92.12
3sbq_A	638	Nitrous-oxide reductase; beta-propeller, cupredoxi	92.03
3a9g_A	354	Putative uncharacterized protein; PQQ dependent de	90.88
2zwa_A	695	Leucine carboxyl methyltransferase 2; HET: SAH CIT	90.79
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	89.27
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	88.96
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.78
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	88.59
2wg3_C	463	Hedgehog-interacting protein; lipoprotein, develop	88.04
3zwu_A	592	Alkaline phosphatase PHOX; hydrolase, beta-propell	86.94
2uvk_A	357	YJHT; unknown function, hypothetical protein, sial	86.1
4a9v_A	592	PHOX; hydrolase, beta-propeller; 1.10A {Pseudomona	84.85
4gq2_M	950	Nucleoporin NUP120; beta propeller alpha helical,	84.82
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	83.3
3ott_A	758	Two-component system sensor histidine kinase; beta	81.72
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	80.94
2xzh_A	365	Clathrin heavy chain 1; endocytosis, endocytosis i	80.87

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.98  E-value=2.1e-30  Score=196.67  Aligned_cols=154  Identities=37%  Similarity=0.704  Sum_probs=140.5

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|+|++|++|+.|++|++||+++++.+..+..+...+.+++|+|++++|++++.|+.|++||++.
T Consensus       158 ~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~  237 (321)
T 3ow8_A          158 YSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQH  237 (321)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTT
T ss_pred             EEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCC
Confidence            34445556689999999999999999999999999999999888887777788999999999999999999999999874


Q ss_pred             --------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 --------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                              +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++++.|+.|++|
T Consensus       238 ~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~s~~~d~~i~vw  317 (321)
T 3ow8_A          238 ANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTFFDHQDQVWGVKYNGNGSKIVSVGDDQEIHIY  317 (321)
T ss_dssp             CCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCCEEEE
T ss_pred             cceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEEeCCCeEEEE
Confidence                    477889999999999999999999999999999998888775 88899999999999999999999999999


Q ss_pred             eCC
Q psy10953        156 SYK  158 (181)
Q Consensus       156 ~~~  158 (181)
                      +..
T Consensus       318 d~p  320 (321)
T 3ow8_A          318 DCP  320 (321)
T ss_dssp             ECC
T ss_pred             eCC
Confidence            963

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.98  E-value=2e-30  Score=195.10  Aligned_cols=160  Identities=25%  Similarity=0.404  Sum_probs=141.7

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ....+..+...+.+++|+|+|++|++++.|++|++||+.+++....+..+...+.+++|+|++++|++++.|+.|++||+
T Consensus         5 ~~~~~~~h~~~V~~~~fsp~~~~l~s~~~dg~v~lWd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~s~d~~i~vwd~   84 (304)
T 2ynn_A            5 IKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVELWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNY   84 (304)
T ss_dssp             CEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEET
T ss_pred             eEEeecCCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCceeEEeeccCCcEEEEEEeCCCCEEEEECCCCEEEEEEC
Confidence            34456667778999999999999999999999999999999988888888888889999999999999999999999999


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeee-cCCcEEEEEEcc-CCCEEEEEcCCCc
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK-HADQVWCVCVAP-DGDKFVSVGEDKA  151 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~-~~~~v~~~~~sp-~g~~l~~~~~d~~  151 (181)
                      .+        +|...|.+++|+|+++++++++.|++|++||++++..+ ..+. |...|.+++|+| +++.|++++.|+.
T Consensus        85 ~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~  164 (304)
T 2ynn_A           85 NTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRT  164 (304)
T ss_dssp             TTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSE
T ss_pred             CCCcEEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCe
Confidence            75        47788999999999999999999999999999876433 3443 788899999999 6789999999999


Q ss_pred             EEEEeCCCCee
Q psy10953        152 VHMYSYKPEEE  162 (181)
Q Consensus       152 v~i~~~~~~~~  162 (181)
                      |++|++..+..
T Consensus       165 v~iwd~~~~~~  175 (304)
T 2ynn_A          165 VKVWSLGQSTP  175 (304)
T ss_dssp             EEEEETTCSSC
T ss_pred             EEEEECCCCCc
Confidence            99999976543

>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}

Probab=99.98  E-value=4.5e-30  Score=194.91  Aligned_cols=166  Identities=43%  Similarity=0.742  Sum_probs=149.1

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ++..+..++..++.++|+|++++|++++.|++|++|++++++....+..+...+.+++|+|++++|++++.|+.|++||+
T Consensus       114 ~~~~~~~~~~~~~~~~~spdg~~l~~g~~dg~v~i~~~~~~~~~~~~~~~~~~v~~~~~spdg~~lasg~~dg~i~iwd~  193 (321)
T 3ow8_A          114 QIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIINIFDI  193 (321)
T ss_dssp             EEEEEECCTTCCCCEEECTTSSEEEEECTTSEEEEEETTTCSEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEeCCCccEEEEEECCCCCEEEEEcCCCcEEEEEcCCCceeEEecCCCceEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            34555666777889999999999999999999999999999988888888888889999999999999999999999998


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .+        +|...|.+++|+|++++|++++.|+.|++||++.+.....+. |...|.+++|+|++++|++++.|+.|+
T Consensus       194 ~~~~~~~~~~~h~~~v~~l~~spd~~~l~s~s~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~D~~v~  273 (321)
T 3ow8_A          194 ATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHASWVLNVAFCPDDTHFVSSSSDKSVK  273 (321)
T ss_dssp             TTTEEEEEECCCSSCCCEEEECTTSCEEEEECTTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcccCCceeEEEEcCCCCEEEEEcCCCeEEEEECCCcceeEEEcCCCCceEEEEECCCCCEEEEEeCCCcEE
Confidence            74        467789999999999999999999999999999888777765 788899999999999999999999999


Q ss_pred             EEeCCCCeeEEEcCC
Q psy10953        154 MYSYKPEEEVEVNGG  168 (181)
Q Consensus       154 i~~~~~~~~~~~~~~  168 (181)
                      +|++.++..+....+
T Consensus       274 iwd~~~~~~~~~~~~  288 (321)
T 3ow8_A          274 VWDVGTRTCVHTFFD  288 (321)
T ss_dssp             EEETTTTEEEEEECC
T ss_pred             EEeCCCCEEEEEEcC
Confidence            999998887765544

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.97  E-value=1.7e-29  Score=193.68  Aligned_cols=159  Identities=14%  Similarity=0.119  Sum_probs=138.4

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEeCCCC--
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFDANTG--   85 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~~~~--   85 (181)
                      .+...|.+++|+|+|++|++|+.|++|++||+++++.+..+..|...+.+++|++++. +|++++.|+.|++||++++  
T Consensus       125 ~H~~~V~~v~~spdg~~l~sgs~d~~i~iwd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~  204 (344)
T 4gqb_B          125 EHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKP  204 (344)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccce
Confidence            4566789999999999999999999999999999999999988888899999999985 6889999999999999754  


Q ss_pred             --------CcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCC-CEEEEEcCCCcEEE
Q psy10953         86 --------HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG-DKFVSVGEDKAVHM  154 (181)
Q Consensus        86 --------~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g-~~l~~~~~d~~v~i  154 (181)
                              +...+.+++|+|+ ++++++++.|+.|++||+++++.+..+. |...|++++|+|++ ++|++++.|+.|++
T Consensus       205 ~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~v  284 (344)
T 4gqb_B          205 ASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSLVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAV  284 (344)
T ss_dssp             EEECC----CCCEEEEEECSSCTTEEEEEETTSEEEEEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             eeeeecceeeccceeeeecCCCCcceEEeccCCcEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEE
Confidence                    2345789999995 5689999999999999999998888776 88899999999998 57899999999999


Q ss_pred             EeCCCCeeEEEcC
Q psy10953        155 YSYKPEEEVEVNG  167 (181)
Q Consensus       155 ~~~~~~~~~~~~~  167 (181)
                      ||+.+++.+...+
T Consensus       285 wd~~~~~~~~~~~  297 (344)
T 4gqb_B          285 LDSSLSELFRSQA  297 (344)
T ss_dssp             ECTTCCEEEEECC
T ss_pred             EECCCCcEEEEcC
Confidence            9999887665543

>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A

Probab=99.97  E-value=5.1e-29  Score=187.45  Aligned_cols=167  Identities=23%  Similarity=0.429  Sum_probs=145.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-cEEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG-KLEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~   80 (181)
                      .+..+..+...+.+++|+|++++|++|+.|++|++||++++ .....+..|...+.+++|+| ++..|++++.|+.|++|
T Consensus        89 ~~~~~~~h~~~v~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~sgs~D~~v~iw  168 (304)
T 2ynn_A           89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVW  168 (304)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEEGGGTTEEEEEECCCCSCEEEEEECTTCTTEEEEEETTSEEEEE
T ss_pred             EEEEEeCCCCcEEEEEEcCCCCEEEEECCCCeEEEEECCCCcchhhhhcccCCcEEEEEECCCCCCEEEEEeCCCeEEEE
Confidence            45566778888999999999999999999999999999877 44566777888888999999 67899999999999999


Q ss_pred             eCCC---------CCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcC
Q psy10953         81 DANT---------GHSSWVLSTAFTR--DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        81 d~~~---------~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      |+..         ++...+..+.|+|  ++++|++++.|+.|++||+++++.+..+. |...|.+++|+|++++|++++.
T Consensus       169 d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~D~~i~iWd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~  248 (304)
T 2ynn_A          169 SLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSE  248 (304)
T ss_dssp             ETTCSSCSEEEECCCTTCEEEEEECCSTTCCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSEEEEEET
T ss_pred             ECCCCCccceeccCCcCcEEEEEEEEcCCCCEEEEEcCCCeEEEEeCCCCccceeeCCCCCCEEEEEECCCCCEEEEEcC
Confidence            9864         3445678888887  67899999999999999999998888876 8889999999999999999999


Q ss_pred             CCcEEEEeCCCCeeEEEcCCC
Q psy10953        149 DKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      |+.|++|+..+++.+.....+
T Consensus       249 Dg~i~iWd~~~~~~~~~~~~~  269 (304)
T 2ynn_A          249 DGTLKIWNSSTYKVEKTLNVG  269 (304)
T ss_dssp             TSCEEEEETTTCCEEEEECCS
T ss_pred             CCeEEEEECCCCceeeeccCC
Confidence            999999999988776655443

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.97  E-value=7.4e-29  Score=187.82  Aligned_cols=164  Identities=22%  Similarity=0.374  Sum_probs=146.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|+|+|++|++|+.|++|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||++
T Consensus        58 ~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~  137 (319)
T 3frx_A           58 VRSFKGHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK  137 (319)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETT
T ss_pred             ceEEeCCcccEEEEEECCCCCEEEEEeCCCEEEEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45566777889999999999999999999999999999999998888888888999999999999999999999999986


Q ss_pred             C-------CCcccEEEEEEcCC------CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCC
Q psy10953         84 T-------GHSSWVLSTAFTRD------GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        84 ~-------~~~~~v~~~~~s~~------~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                      .       +|...|..+.|+|.      +..+++++.|+.|++||+.+.+....+. |...|++++|+|+|++|++++.|
T Consensus       138 ~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~~~d  217 (319)
T 3frx_A          138 GQCLATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKD  217 (319)
T ss_dssp             SCEEEEECCCSSCEEEEEECCC------CCEEEEEETTSCEEEEETTTTEEEEEECCCCSCEEEEEECTTSSEEEEEETT
T ss_pred             CCeEEEEeccCCcEEEEEEccCCCCCCCccEEEEEeCCCEEEEEECCcchhheeecCCCCcEEEEEEcCCCCEEEEEeCC
Confidence            3       57788999999995      4489999999999999999887776664 88899999999999999999999


Q ss_pred             CcEEEEeCCCCeeEEEcC
Q psy10953        150 KAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~~~~  167 (181)
                      +.|++|++..++.+....
T Consensus       218 g~i~iwd~~~~~~~~~~~  235 (319)
T 3frx_A          218 GEIMLWNLAAKKAMYTLS  235 (319)
T ss_dssp             CEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCcEEEEec
Confidence            999999999887665443

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=3e-29  Score=191.43  Aligned_cols=154  Identities=20%  Similarity=0.390  Sum_probs=139.7

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+..+...+.+++|+|+++++++|+.|++|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus       176 ~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d~~v~~wd~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~d~~v~iwd~  255 (340)
T 1got_B          176 QTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL  255 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCSEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             EEEEEcCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCeeEEEEcCCcCCEEEEEEcCCCCEEEEEcCCCcEEEEEC
Confidence            34556667778999999999999999999999999999999998888888888889999999999999999999999998


Q ss_pred             CCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         83 NTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        83 ~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      +.+          +...|.+++|+|+|+++++++.|+.|++||+.++..+..+. |...|.+++|+|+|++|++++.|+.
T Consensus       256 ~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d~~i~vwd~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~  335 (340)
T 1got_B          256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSF  335 (340)
T ss_dssp             TTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSCEEEEETTSC
T ss_pred             CCCcEEEEEccCCcccceEEEEECCCCCEEEEECCCCeEEEEEcccCcEeeEeecCCCcEEEEEEcCCCCEEEEEcCCcc
Confidence            753          22368999999999999999999999999999888777775 8889999999999999999999999


Q ss_pred             EEEEe
Q psy10953        152 VHMYS  156 (181)
Q Consensus       152 v~i~~  156 (181)
                      |++|+
T Consensus       336 i~iWd  340 (340)
T 1got_B          336 LKIWN  340 (340)
T ss_dssp             EEEEC
T ss_pred             EEecC
Confidence            99996

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=4e-29  Score=195.38  Aligned_cols=161  Identities=24%  Similarity=0.372  Sum_probs=146.9

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      .+..+...+.+++|+|++++|++|+.|++|++||+.+++....+..|...+.+++|+|++++|++++.|+.|++||+.+ 
T Consensus       103 ~l~gh~~~V~~~~~~p~~~~l~s~s~Dg~i~vwd~~~~~~~~~l~~h~~~V~~v~~~~~~~~l~sgs~D~~i~iwd~~~~  182 (410)
T 1vyh_C          103 ALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQGF  182 (410)
T ss_dssp             EEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTSS
T ss_pred             eecccCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEEeccCCcEEEEEEcCCCCEEEEEeCCCeEEEEeCCCC
Confidence            4556777899999999999999999999999999999999888888888889999999999999999999999999864 


Q ss_pred             -------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         85 -------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                             +|...|.+++|+|+++++++++.|+.|++||+.++..+..+. |...+.+++++|+|+++++++.|+.|++|+
T Consensus       183 ~~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd  262 (410)
T 1vyh_C          183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV  262 (410)
T ss_dssp             CEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEE
T ss_pred             ceeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEE
Confidence                   477889999999999999999999999999999998887776 778899999999999999999999999999


Q ss_pred             CCCCeeEEEc
Q psy10953        157 YKPEEEVEVN  166 (181)
Q Consensus       157 ~~~~~~~~~~  166 (181)
                      +.+++.....
T Consensus       263 ~~~~~~~~~~  272 (410)
T 1vyh_C          263 VATKECKAEL  272 (410)
T ss_dssp             TTTCCEEEEE
T ss_pred             CCCCceeeEe
Confidence            9887665444

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=1.8e-28  Score=184.34  Aligned_cols=162  Identities=24%  Similarity=0.413  Sum_probs=146.9

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|+|++|++++.|++|++|++.+++....+..+...+.+++|+|++++|++++.|+.+++||+.+
T Consensus        17 ~~~~gh~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~   96 (312)
T 4ery_A           17 FTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSS   96 (312)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             EEEcccCCcEEEEEECCCCCEEEEeeCCCeEEEEeCCCcccchhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCC
Confidence            44566778899999999999999999999999999999999888888888888999999999999999999999999975


Q ss_pred             --------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 --------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                              +|...|.+++|+|+++++++++.|+.|++||+++++.+..+. |...+.+++|+|+++++++++.|+.|++|
T Consensus        97 ~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~w  176 (312)
T 4ery_A           97 GKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW  176 (312)
T ss_dssp             CCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             CcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEE
Confidence                    366789999999999999999999999999999988877775 77889999999999999999999999999


Q ss_pred             eCCCCeeEEEc
Q psy10953        156 SYKPEEEVEVN  166 (181)
Q Consensus       156 ~~~~~~~~~~~  166 (181)
                      ++.+++.+...
T Consensus       177 d~~~~~~~~~~  187 (312)
T 4ery_A          177 DTASGQCLKTL  187 (312)
T ss_dssp             ETTTCCEEEEE
T ss_pred             ECCCCceeeEE
Confidence            99888766543

>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*

Probab=99.97  E-value=1.8e-28  Score=187.06  Aligned_cols=165  Identities=24%  Similarity=0.462  Sum_probs=147.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ....+..+...+++++|+|++++|++|+.|++|++||+.+++....+..+...+.+++|+|++++|++++.|+.+++|++
T Consensus        47 ~~~~l~gH~~~v~~~~~s~d~~~l~s~s~Dg~v~iWd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~d~~v~iw~~  126 (340)
T 1got_B           47 TRRTLRGHLAKIYAMHWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECSSSCEEEEEECTTSSEEEEEETTCEEEEEET
T ss_pred             hheeecCCCCceEEEEECCCCCEEEEEeCCCcEEEEECCCCCcceEeecCCccEEEEEECCCCCEEEEEeCCCeEEEEEC
Confidence            44567778888999999999999999999999999999999988888888888889999999999999999999999998


Q ss_pred             CC------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCC
Q psy10953         83 NT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        83 ~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                      .+            +|...+.++.|+++++ +++++.|+.|++||+.+++.+..+. |...|++++|+|+++++++++.|
T Consensus       127 ~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-l~s~s~d~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~sg~~d  205 (340)
T 1got_B          127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQ-IVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACD  205 (340)
T ss_dssp             TTCSBSCEEEEEEECCSSCEEEEEEEETTE-EEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             ccCCCcceeEEEecCCCccEEEEEECCCCc-EEEEECCCcEEEEECCCCcEEEEEcCCCCceEEEEECCCCCEEEEEeCC
Confidence            64            3667889999999876 7889999999999999998887776 88899999999999999999999


Q ss_pred             CcEEEEeCCCCeeEEEcCC
Q psy10953        150 KAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~~~~~  168 (181)
                      +.|++|++.++..+....+
T Consensus       206 ~~v~~wd~~~~~~~~~~~~  224 (340)
T 1got_B          206 ASAKLWDVREGMCRQTFTG  224 (340)
T ss_dssp             SCEEEEETTTCSEEEEECC
T ss_pred             CcEEEEECCCCeeEEEEcC
Confidence            9999999988876655443

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=2.6e-28  Score=187.40  Aligned_cols=167  Identities=23%  Similarity=0.403  Sum_probs=148.9

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +....+..+...+++++|+|++++|++|+.|++|++||..+++....+..+...+.+++|+|+|..+++++.|+.+++|+
T Consensus        55 ~~~~~l~gH~~~V~~~~~s~d~~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~~~~v~~~~~sp~g~~lasg~~d~~i~v~~  134 (354)
T 2pbi_B           55 KTRRTLKGHGNKVLCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPSGCAIACGGLDNKCSVYP  134 (354)
T ss_dssp             CEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCEEEECTTSSEEEEESTTSEEEEEE
T ss_pred             EEEEEecCCCCeEEEEEECCCCCEEEEEeCCCeEEEEECCCCCcceEEecCCCCEEEEEECCCCCEEEEeeCCCCEEEEE
Confidence            34566778888999999999999999999999999999999998888877777788999999999999999999999999


Q ss_pred             CCC--------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc--CCCEEE
Q psy10953         82 ANT--------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP--DGDKFV  144 (181)
Q Consensus        82 ~~~--------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp--~g~~l~  144 (181)
                      +..              +|...|.+++|+|+++.+++++.|++|++||+.+++.+..+. |...|.+++++|  +|++|+
T Consensus       135 ~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~  214 (354)
T 2pbi_B          135 LTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFV  214 (354)
T ss_dssp             CCCCTTCCSGGGCEEEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEE
T ss_pred             EeccccccccccceeeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEE
Confidence            853              266789999999999999999999999999999998888876 788899999987  578999


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +++.|+.|++||+.+++.+....+
T Consensus       215 sgs~Dg~v~~wd~~~~~~~~~~~~  238 (354)
T 2pbi_B          215 SGGCDKKAMVWDMRSGQCVQAFET  238 (354)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEeCCCeEEEEECCCCcEEEEecC
Confidence            999999999999998877665544

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.97  E-value=8.3e-29  Score=190.42  Aligned_cols=156  Identities=22%  Similarity=0.238  Sum_probs=126.2

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEeCCC---
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFDANT---   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~~~---   84 (181)
                      .+...+.+++|+|+|++|++|+.|++|++||+++++....+..+...+.+++|++++. .+++++.|+.|++||+++   
T Consensus       137 ~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~s~~~dg~v~~wd~~~~~~  216 (357)
T 4g56_B          137 EHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLWDTRKPKP  216 (357)
T ss_dssp             CCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEEEEETTSCEEECCTTSSSC
T ss_pred             CCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceeeeeccCCceEEEECCCCce
Confidence            3456689999999999999999999999999999988877776666666777777663 566667777777776531   


Q ss_pred             --------------------------------------------------CCcccEEEEEEcCCC-CEEEEEeCCCcEEE
Q psy10953         85 --------------------------------------------------GHSSWVLSTAFTRDG-KFFISASADHTVRV  113 (181)
Q Consensus        85 --------------------------------------------------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v  113 (181)
                                                                        +|...|.+++|+|++ ++|++++.|++|++
T Consensus       217 ~~~~~~~~~~~~v~~v~~sp~~~~~la~g~~d~~i~~wd~~~~~~~~~~~~~~~~v~~l~~sp~~~~~lasgs~D~~i~i  296 (357)
T 4g56_B          217 ATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSLVNIKNPDSAQTSAVHSQNITGLAYSYHSSPFLASISEDCTVAV  296 (357)
T ss_dssp             BCBCCCTTCCSCEEEEEECTTSTTEEEEEESSSCEEEEESSCGGGCEEECCCSSCEEEEEECSSSSCCEEEEETTSCEEE
T ss_pred             eeeeeeccccccccchhhhhcccceEEEeecccceeEEECCCCcEeEEEeccceeEEEEEEcCCCCCEEEEEeCCCEEEE
Confidence                                                              244568889999987 57899999999999


Q ss_pred             EecCCCceeeeeecCCcEEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        114 WNFARRENMHTFKHADQVWCVCVAP-DGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       114 ~d~~~~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ||+.+++.+..+.|.+.|++++|+| ++++|++++.|+.|++|++....+..
T Consensus       297 wd~~~~~~~~~~~H~~~V~~vafsP~d~~~l~s~s~Dg~v~iW~~~~~~~~~  348 (357)
T 4g56_B          297 LDADFSEVFRDLSHRDFVTGVAWSPLDHSKFTTVGWDHKVLHHHLPSEGRTE  348 (357)
T ss_dssp             ECTTSCEEEEECCCSSCEEEEEECSSSTTEEEEEETTSCEEEEECC------
T ss_pred             EECCCCcEeEECCCCCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCccc
Confidence            9999988888778999999999998 79999999999999999997654443

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.97  E-value=7.9e-29  Score=189.50  Aligned_cols=160  Identities=21%  Similarity=0.424  Sum_probs=137.5

Q ss_pred             cceeeeccCee-eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE--E-EecCCceEEEEEECCCCCEEEEeeCCCcE
Q psy10953          2 KQISKINVGPV-DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ--I-FDTRGKFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         2 ~~~~~~~~~~~-~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~--~-~~~~~~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      ..+..+..++. .++.++|+|+|++|++|+.|++|++||+.+++...  . ...|...+.+++|+|++++|++++.|+.+
T Consensus         6 ~~~~~~~~h~~~~v~~l~~sp~g~~las~~~D~~i~iw~~~~~~~~~~~~~~~~h~~~v~~~~~sp~g~~l~s~s~D~~v   85 (345)
T 3fm0_A            6 VLLGRVPAHPDSRCWFLAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASASFDATT   85 (345)
T ss_dssp             EEEEEECCSTTSCEEEEEECTTSSCEEEEETTSCEEEEEEETTEEEEEEEECSSCSSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             EEeeeecCCCCCcEEEEEECCCCCEEEEEcCCCeEEEEEcCCCcceeeeeeccccCCcEEEEEECCCCCEEEEEECCCcE
Confidence            35666777777 79999999999999999999999999998876432  2 23466778899999999999999999999


Q ss_pred             EEEeCCC----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce---eeee-ecCCcEEEEEEccCCCEE
Q psy10953         78 NIFDANT----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN---MHTF-KHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        78 ~i~d~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~-~~~~~v~~~~~sp~g~~l  143 (181)
                      ++||...          +|...|.+++|+|++++|++++.|+.|++||+.....   +..+ .|...|.+++|+|++++|
T Consensus        86 ~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~l  165 (345)
T 3fm0_A           86 CIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNSHTQDVKHVVWHPSQELL  165 (345)
T ss_dssp             EEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTTSCEEEEEEECCCCSCEEEEEECSSSSCE
T ss_pred             EEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCCCCeEEEEEecCcCCCeEEEEECCCCCEE
Confidence            9998753          5778899999999999999999999999999987643   3333 377889999999999999


Q ss_pred             EEEcCCCcEEEEeCCCCe
Q psy10953        144 VSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~  161 (181)
                      ++++.|+.|++|+...+.
T Consensus       166 ~s~s~d~~i~~w~~~~~~  183 (345)
T 3fm0_A          166 ASASYDDTVKLYREEEDD  183 (345)
T ss_dssp             EEEETTSCEEEEEEETTE
T ss_pred             EEEeCCCcEEEEEecCCC
Confidence            999999999999987764

>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1

Probab=99.97  E-value=2e-28  Score=191.45  Aligned_cols=166  Identities=22%  Similarity=0.371  Sum_probs=148.5

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+..+...+.+++|+|+++++++|+.|++|++||+++++....+..+...+.++.++|++++|++++.|+.|++||+
T Consensus       184 ~~~~~~~h~~~V~~v~~~p~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~h~~~v~~~~~~~~g~~l~s~s~D~~v~vwd~  263 (410)
T 1vyh_C          184 CIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV  263 (410)
T ss_dssp             EEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEET
T ss_pred             eeEEEcCCCCCEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEeCCCccEEEEEECCCCCEEEEEcCCCeEEEEEC
Confidence            35566677788999999999999999999999999999999999888888888889999999999999999999999998


Q ss_pred             CC--------CCcccEEEEEEcCC--------------------CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEE
Q psy10953         83 NT--------GHSSWVLSTAFTRD--------------------GKFFISASADHTVRVWNFARRENMHTFK-HADQVWC  133 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~--------------------~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~  133 (181)
                      .+        +|...|.+++|+|+                    |.++++++.|+.|++||++++..+..+. |...|++
T Consensus       264 ~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~sgs~D~~i~iwd~~~~~~~~~~~~h~~~v~~  343 (410)
T 1vyh_C          264 ATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG  343 (410)
T ss_dssp             TTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEE
T ss_pred             CCCceeeEecCCCceEEEEEEcCcccccchhhhccccccccCCCCCEEEEEeCCCeEEEEECCCCceEEEEECCCCcEEE
Confidence            74        46778999999996                    6789999999999999999998887775 7888999


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      ++|+|+|++|++++.|+.|++|++.+++.+....+
T Consensus       344 v~~~~~g~~l~s~s~D~~i~vwd~~~~~~~~~~~~  378 (410)
T 1vyh_C          344 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNA  378 (410)
T ss_dssp             EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEEC
T ss_pred             EEEcCCCCEEEEEeCCCeEEEEECCCCceEEEEcC
Confidence            99999999999999999999999988766554433

>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...

Probab=99.97  E-value=8.5e-28  Score=180.69  Aligned_cols=165  Identities=23%  Similarity=0.445  Sum_probs=147.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|+|++++|++++.|++|++||+++++....+..+...+.++.|+|++++|++++.|+.+++||++
T Consensus        58 ~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~iwd~~  137 (312)
T 4ery_A           58 EKTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVK  137 (312)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSCEEEEETT
T ss_pred             chhhccCCCceEEEEEcCCCCEEEEECCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECC
Confidence            34556677789999999999999999999999999999999988888888888899999999999999999999999997


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      ++        |...|.+++|+|+++++++++.|+.|++||+++++.+..+.  +...+..++|+|+++++++++.|+.|+
T Consensus       138 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~  217 (312)
T 4ery_A          138 TGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLK  217 (312)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCSSCCCEEEEEECTTSSEEEEEETTTEEE
T ss_pred             CCEEEEEecCCCCcEEEEEEcCCCCEEEEEeCCCcEEEEECCCCceeeEEeccCCCceEEEEECCCCCEEEEEcCCCeEE
Confidence            53        56789999999999999999999999999999888776653  456789999999999999999999999


Q ss_pred             EEeCCCCeeEEEcCC
Q psy10953        154 MYSYKPEEEVEVNGG  168 (181)
Q Consensus       154 i~~~~~~~~~~~~~~  168 (181)
                      +|++..+..+....+
T Consensus       218 iwd~~~~~~~~~~~~  232 (312)
T 4ery_A          218 LWDYSKGKCLKTYTG  232 (312)
T ss_dssp             EEETTTTEEEEEECS
T ss_pred             EEECCCCcEEEEEEe
Confidence            999998877765544

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.97  E-value=9.7e-29  Score=190.62  Aligned_cols=148  Identities=16%  Similarity=0.131  Sum_probs=122.6

Q ss_pred             eeEEEEEEcCCCCEEEE--EeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLS--GSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~--~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      ..+..++|||||+++++  ++.|++|++||+++++.+..+.++ ..+.+++|+|||+++++++.++.+.+|+...     
T Consensus       134 ~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~~~~~-~~V~~v~fspdg~~l~s~s~~~~~~~~~~~~~~~~~  212 (365)
T 4h5i_A          134 DYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFEIETR-GEVKDLHFSTDGKVVAYITGSSLEVISTVTGSCIAR  212 (365)
T ss_dssp             CCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEEEECS-SCCCEEEECTTSSEEEEECSSCEEEEETTTCCEEEE
T ss_pred             cCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEEeCCC-CceEEEEEccCCceEEeccceeEEEEEeccCcceee
Confidence            34788999999999865  447899999999999988877644 4467899999999998888665444443210     


Q ss_pred             ------------------------------------------------------CCcccEEEEEEcCCCCEEEEEeCCCc
Q psy10953         85 ------------------------------------------------------GHSSWVLSTAFTRDGKFFISASADHT  110 (181)
Q Consensus        85 ------------------------------------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~  110 (181)
                                                                            +|...|.+++|+|+|++|++++.|++
T Consensus       213 ~~~~~~~~~v~~v~fspdg~~l~~~s~d~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~Spdg~~lasgs~D~~  292 (365)
T 4h5i_A          213 KTDFDKNWSLSKINFIADDTVLIAASLKKGKGIVLTKISIKSGNTSVLRSKQVTNRFKGITSMDVDMKGELAVLASNDNS  292 (365)
T ss_dssp             ECCCCTTEEEEEEEEEETTEEEEEEEESSSCCEEEEEEEEETTEEEEEEEEEEESSCSCEEEEEECTTSCEEEEEETTSC
T ss_pred             eecCCCCCCEEEEEEcCCCCEEEEEecCCcceeEEeecccccceecceeeeeecCCCCCeEeEEECCCCCceEEEcCCCE
Confidence                                                                  12345788999999999999999999


Q ss_pred             EEEEecCCCceeeee-e-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        111 VRVWNFARRENMHTF-K-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       111 i~v~d~~~~~~~~~~-~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      |++||+.+++.+..+ . |...|++++|||||++|+++|.|++|+||++.+.
T Consensus       293 V~iwd~~~~~~~~~~~~gH~~~V~~v~fSpdg~~laS~S~D~tvrvw~ip~~  344 (365)
T 4h5i_A          293 IALVKLKDLSMSKIFKQAHSFAITEVTISPDSTYVASVSAANTIHIIKLPLN  344 (365)
T ss_dssp             EEEEETTTTEEEEEETTSSSSCEEEEEECTTSCEEEEEETTSEEEEEECCTT
T ss_pred             EEEEECCCCcEEEEecCcccCCEEEEEECCCCCEEEEEeCCCeEEEEEcCCC
Confidence            999999999988876 3 8899999999999999999999999999999643

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.97  E-value=3.5e-28  Score=198.66  Aligned_cols=162  Identities=25%  Similarity=0.400  Sum_probs=142.1

Q ss_pred             eeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+..+...+.+++|+|++. +|++|+.|++|++||..+++....+..|...+.+++|+|||++|++++.|+.|++||+.
T Consensus       141 ~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~  220 (611)
T 1nr0_A          141 GNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGV  220 (611)
T ss_dssp             BCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             ceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECCCcEEEEECC
Confidence            34556777899999999987 59999999999999999999888888888889999999999999999999999999974


Q ss_pred             C---------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-----------------------
Q psy10953         84 T---------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-----------------------  125 (181)
Q Consensus        84 ~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----------------------  125 (181)
                      +               +|...|.+++|+|+|++|++++.|++|++||+.+++.+..+                       
T Consensus       221 ~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~  300 (611)
T 1nr0_A          221 DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSI  300 (611)
T ss_dssp             TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEE
T ss_pred             CCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeeecCCCCccceeEEEEEcCCEEEEE
Confidence            2               57788999999999999999999999999999876543321                       


Q ss_pred             ---------------------ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        126 ---------------------KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       126 ---------------------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                                           .|...|++++|+|+|++|++++.|+.|++|++.+++.....
T Consensus       301 s~d~~i~~~~~~~~~~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~Wd~~~~~~~~~~  362 (611)
T 1nr0_A          301 SANGFINFVNPELGSIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVF  362 (611)
T ss_dssp             ETTCCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECS
T ss_pred             eCCCcEEEEeCCCCCcceEEcCCCCCEEEEEEeCCCCEEEEEeCCCcEEEEECCCCceeeec
Confidence                                 26678999999999999999999999999999887665543

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.97  E-value=6.6e-28  Score=184.05  Aligned_cols=153  Identities=22%  Similarity=0.352  Sum_probs=136.1

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|++.++++++.|++|++||+++++....+..|...+.+++|+|++++|++++.|+.|++||+..
T Consensus        70 ~~l~~h~~~V~~~~~~~~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~  149 (343)
T 2xzm_R           70 KALTGHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILG  149 (343)
T ss_dssp             EEECCCSSCEEEEEECSSTTEEEEEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSS
T ss_pred             chhccCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccC
Confidence            44566777899999999999999999999999999999999888888888889999999999999999999999999852


Q ss_pred             ----------CCcccEEEEEEcCCC----------CEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEE
Q psy10953         85 ----------GHSSWVLSTAFTRDG----------KFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~~----------~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l  143 (181)
                                +|...|.+++|+|++          .++++++.|+.|++||.. ......+ .|...|.+++|+|+|++|
T Consensus       150 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~-~~~~~~~~~h~~~v~~~~~s~~g~~l  228 (343)
T 2xzm_R          150 ECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTN-FQIRYTFKAHESNVNHLSISPNGKYI  228 (343)
T ss_dssp             CEEEECCTTTSCSSCEEEEEECCCCCSCSCCCSSCCEEEEEETTSEEEEEETT-TEEEEEEECCSSCEEEEEECTTSSEE
T ss_pred             CceeeeecccCCCceeeeeeeccccccccccCCCCCEEEEEcCCCEEEEEcCC-CceeEEEcCccccceEEEECCCCCEE
Confidence                      467789999999987          789999999999999954 4444444 478899999999999999


Q ss_pred             EEEcCCCcEEEEeCC
Q psy10953        144 VSVGEDKAVHMYSYK  158 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~  158 (181)
                      ++++.|+.|++|++.
T Consensus       229 ~sgs~dg~v~iwd~~  243 (343)
T 2xzm_R          229 ATGGKDKKLLIWDIL  243 (343)
T ss_dssp             EEEETTCEEEEEESS
T ss_pred             EEEcCCCeEEEEECC
Confidence            999999999999983

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.97  E-value=7.6e-28  Score=183.02  Aligned_cols=165  Identities=25%  Similarity=0.427  Sum_probs=134.2

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEE-ec-CCceEEEEEECCCCCEEEEeeCCCcE
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIF-DT-RGKFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~-~~-~~~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      +.+..+..+...+++++|+|+  +|++|+.|++|++||+.++.  ....+ .. |...+.+++|+|++++|++++.|+.|
T Consensus         5 ~~~~~~~~h~~~v~~~~~s~~--~las~~~D~~i~lw~~~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~las~s~D~~v   82 (330)
T 2hes_X            5 NLIKSLKLYKEKIWSFDFSQG--ILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTV   82 (330)
T ss_dssp             EEEEEEECCSSCEEEEEEETT--EEEEEESSSCEEEEECSSSCCEEEEEECTTCCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             ccceeeccCCCceeeeccCCC--EEEEEcCCCEEEEEEecCCCeEEEEEEecCCccCCEEEEEECCCCCEEEEEeCCCcE
Confidence            356677788889999999988  99999999999999998753  34444 23 66678899999999999999999999


Q ss_pred             EEEeCC---------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC----ceeeeee-cCCcEEEEEEc
Q psy10953         78 NIFDAN---------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR----ENMHTFK-HADQVWCVCVA  137 (181)
Q Consensus        78 ~i~d~~---------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~----~~~~~~~-~~~~v~~~~~s  137 (181)
                      ++||+.               .+|...|.+++|+|+|++|++++.|+.|++||+...    +.+..+. |...|.+++|+
T Consensus        83 ~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~~~~~~~~~~~~~~~~h~~~v~~v~~~  162 (330)
T 2hes_X           83 SIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWH  162 (330)
T ss_dssp             EEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEECCTTCCCCEEEEEECCCSSCEEEEEEC
T ss_pred             EEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEeccCCCCCeEEEEEeccCCCceEEEEEC
Confidence            999983               246778999999999999999999999999999532    3344444 77889999999


Q ss_pred             cCCCEEEEEcCCCcEEEEeCCCC--eeEEEcCC
Q psy10953        138 PDGDKFVSVGEDKAVHMYSYKPE--EEVEVNGG  168 (181)
Q Consensus       138 p~g~~l~~~~~d~~v~i~~~~~~--~~~~~~~~  168 (181)
                      |++++|++++.|+.|++|+...+  +.+....+
T Consensus       163 p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~  195 (330)
T 2hes_X          163 PSEALLASSSYDDTVRIWKDYDDDWECVAVLNG  195 (330)
T ss_dssp             SSSSEEEEEETTSCEEEEEEETTEEEEEEEECC
T ss_pred             CCCCEEEEEcCCCeEEEEECCCCCeeEEEEccC
Confidence            99999999999999999998765  34444433

>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}

Probab=99.97  E-value=1.7e-27  Score=182.89  Aligned_cols=164  Identities=21%  Similarity=0.294  Sum_probs=143.1

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEEeCC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~d~~   83 (181)
                      .+..+...+.+++|+|+++.|++++.|++|++||+++++.+..+..|...+.++.++|  ++++|++++.|+.|++||++
T Consensus       149 ~~~~h~~~v~~~~~~~~~~~l~t~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~~~~~~~~~g~~l~sgs~Dg~v~~wd~~  228 (354)
T 2pbi_B          149 SVAMHTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMR  228 (354)
T ss_dssp             EEEECSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECCCSSCCEEEEEETTSCEEEEETT
T ss_pred             eeeccCCcEEEEEEeCCCCEEEEEeCCCcEEEEeCCCCeEEEEEcCCCCCeEEEEEEeCCCCCEEEEEeCCCeEEEEECC
Confidence            3444666789999999999999999999999999999999988888888788888877  57899999999999999987


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec---CCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH---ADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      +        +|...|.+++|+|++++|++++.|+.|++||++....+..+..   ...+.+++|+|+|+++++++.|+.|
T Consensus       229 ~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~v~lwd~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~l~~g~~d~~i  308 (354)
T 2pbi_B          229 SGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTI  308 (354)
T ss_dssp             TCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECTTSSEEEEEETTSCE
T ss_pred             CCcEEEEecCCCCCeEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCcccceeEEEEeCCCCEEEEEECCCcE
Confidence            5        4677899999999999999999999999999998876665542   2468899999999999999999999


Q ss_pred             EEEeCCCCeeEEEcCCC
Q psy10953        153 HMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       153 ~i~~~~~~~~~~~~~~~  169 (181)
                      ++|++.++..+....+.
T Consensus       309 ~vwd~~~~~~~~~l~~h  325 (354)
T 2pbi_B          309 NVWDVLKGSRVSILFGH  325 (354)
T ss_dssp             EEEETTTCSEEEEECCC
T ss_pred             EEEECCCCceEEEEECC
Confidence            99999888877665543

>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}

Probab=99.96  E-value=7.6e-28  Score=184.48  Aligned_cols=158  Identities=22%  Similarity=0.259  Sum_probs=134.5

Q ss_pred             ceeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCC-CCEEEEeeCCCcEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTD-GHWIASGALDGIIN   78 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d-~~~l~~~~~d~~v~   78 (181)
                      .+..+..+...+.+++|+|++. ++++++.|++|++||+++++....+..  ++..+.+++|+|+ +++|++|+.|+.|+
T Consensus       161 ~~~~~~~h~~~V~~~~~~~~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~l~sg~~dg~v~  240 (344)
T 4gqb_B          161 VLSSYRAHAAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVS  240 (344)
T ss_dssp             EEEEECCCSSCEEEEEECSSCTTEEEEEETTSCEEEEETTSSSCEEECC----CCCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             EEEEEcCcCCceEEEEecCCCCCceeeeccccccccccccccceeeeeecceeeccceeeeecCCCCcceEEeccCCcEE
Confidence            4566777888899999999985 678999999999999999988776543  3445678999995 56788999999999


Q ss_pred             EEeCCC--------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEEcC
Q psy10953         79 IFDANT--------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSVGE  148 (181)
Q Consensus        79 i~d~~~--------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~~  148 (181)
                      +||+++        +|...|.+++|+|++ ++|++++.|++|++||+.+++......|.+.|++++|+|+++ +|+++|.
T Consensus       241 ~wd~~~~~~~~~~~~h~~~v~~v~fsp~g~~~lasgs~D~~i~vwd~~~~~~~~~~~H~~~V~~v~~sp~~~~llas~s~  320 (344)
T 4gqb_B          241 LVDTKSTSCVLSSAVHSQCVTGLVFSPHSVPFLASLSEDCSLAVLDSSLSELFRSQAHRDFVRDATWSPLNHSLLTTVGW  320 (344)
T ss_dssp             EEESCC--CCEEEECCSSCEEEEEECSSSSCCEEEEETTSCEEEECTTCCEEEEECCCSSCEEEEEECSSSTTEEEEEET
T ss_pred             EEECCCCcEEEEEcCCCCCEEEEEEccCCCeEEEEEeCCCeEEEEECCCCcEEEEcCCCCCEEEEEEeCCCCeEEEEEcC
Confidence            999974        477889999999998 589999999999999999988776666999999999999987 4678999


Q ss_pred             CCcEEEEeCCCC
Q psy10953        149 DKAVHMYSYKPE  160 (181)
Q Consensus       149 d~~v~i~~~~~~  160 (181)
                      |+.|++|++.++
T Consensus       321 D~~v~~w~v~~~  332 (344)
T 4gqb_B          321 DHQVVHHVVPTE  332 (344)
T ss_dssp             TSCEEEEECCC-
T ss_pred             CCeEEEEECCCC
Confidence            999999999764

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=1.4e-27  Score=178.97  Aligned_cols=158  Identities=25%  Similarity=0.337  Sum_probs=135.3

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CcEEEEEecCCceEEEEEECCC--CCEEEEeeCCCcEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--GKLEQIFDTRGKFTLSIAYSTD--GHWIASGALDGIINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~~~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v~i   79 (181)
                      +..+..+...+++++|+|+|++|++|+.|++|++||+.+  .+....+..|...+.+++|+++  +++|++++.|++|++
T Consensus         2 ~~~~~~h~~~V~~~~~s~~g~~las~s~D~~v~iw~~~~~~~~~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~i   81 (297)
T 2pm7_B            2 VVIANAHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMI   81 (297)
T ss_dssp             CEECCSCSSCEEEEEECTTSSEEEEEETTSCEEEEEBCSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEE
T ss_pred             ceeccCCcCceEEEEECCCCCEEEEEeCCCEEEEEecCCCCcEEEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEE
Confidence            456677888899999999999999999999999999974  3566777778888899999874  899999999999999


Q ss_pred             EeCCCC----------CcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCce--eeee-ecCCcEEEEEEccC-----
Q psy10953         80 FDANTG----------HSSWVLSTAFTRD--GKFFISASADHTVRVWNFARREN--MHTF-KHADQVWCVCVAPD-----  139 (181)
Q Consensus        80 ~d~~~~----------~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~--~~~~-~~~~~v~~~~~sp~-----  139 (181)
                      ||+.++          |...|.+++|+|+  +++|++++.|+.|++||++....  ...+ .|...|.+++|+|+     
T Consensus        82 Wd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~  161 (297)
T 2pm7_B           82 WKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEED  161 (297)
T ss_dssp             EEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC----
T ss_pred             EEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCcEEEEEecCCCceeeeeeecccCccceEeecCCccccc
Confidence            998643          5678999999998  89999999999999999987532  2223 47788999999997     


Q ss_pred             --------CCEEEEEcCCCcEEEEeCCCCe
Q psy10953        140 --------GDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       140 --------g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                              +++|++++.|+.|++|++..+.
T Consensus       162 ~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~  191 (297)
T 2pm7_B          162 GEHNGTKESRKFVTGGADNLVKIWKYNSDA  191 (297)
T ss_dssp             --------CCEEEEEETTSCEEEEEEETTT
T ss_pred             ccCCCCCCcceEEEEcCCCcEEEEEEcCCC
Confidence                    5799999999999999987654

>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}

Probab=99.96  E-value=2e-27  Score=180.66  Aligned_cols=151  Identities=21%  Similarity=0.357  Sum_probs=127.4

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-------CcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET-------GKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-------~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +...+.+++|+|++++|++|+.|++|++||+..       .+....+..|...+.+++|+|++++|++++.|+.|++||+
T Consensus        57 h~~~v~~v~~sp~~~~las~s~D~~v~iw~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~sp~g~~las~s~D~~v~iwd~  136 (330)
T 2hes_X           57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWET  136 (330)
T ss_dssp             CCSCEEEEEECTTSSEEEEEETTSCEEEEEC-------CCCEEEEEEC----CEEEEEECTTSCEEEEEETTSCEEEEEC
T ss_pred             ccCCEEEEEECCCCCEEEEEeCCCcEEEEEcccCcCccccceeEEEEcCCCCcEEEEEECCCCCEEEEEeCCCEEEEEec
Confidence            666799999999999999999999999999853       2445566677778889999999999999999999999998


Q ss_pred             C------------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC--ceeeeee-cCCcEEEEEEccC--CCEEEE
Q psy10953         83 N------------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR--ENMHTFK-HADQVWCVCVAPD--GDKFVS  145 (181)
Q Consensus        83 ~------------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~--~~~~~~~-~~~~v~~~~~sp~--g~~l~~  145 (181)
                      .            .+|...|.+++|+|++++|++++.|+.|++||..++  +.+..+. |...|++++|+|+  +..+++
T Consensus       137 ~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~iW~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s  216 (330)
T 2hes_X          137 DESGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVAVLNGHEGTVWSSDFDKTEGVFRLCS  216 (330)
T ss_dssp             CTTCCCCEEEEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCSSSSCEEEE
T ss_pred             cCCCCCeEEEEEeccCCCceEEEEECCCCCEEEEEcCCCeEEEEECCCCCeeEEEEccCCCCcEEEEEecCCCCeeEEEE
Confidence            3            246778999999999999999999999999998765  4555554 8889999999999  778999


Q ss_pred             EcCCCcEEEEeCCCC
Q psy10953        146 VGEDKAVHMYSYKPE  160 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~  160 (181)
                      ++.|+.|++|++..+
T Consensus       217 ~s~D~~v~iw~~~~~  231 (330)
T 2hes_X          217 GSDDSTVRVWKYMGD  231 (330)
T ss_dssp             EETTSCEEEEEEEEE
T ss_pred             EeCCCeEEEEEecCC
Confidence            999999999998543

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=5.8e-28  Score=186.91  Aligned_cols=165  Identities=23%  Similarity=0.494  Sum_probs=133.5

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC-
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA-   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~-   82 (181)
                      ...+..+...|++++|+|++++|++|+.|++|++||..+++....+..+...+.+++|+|+|++|++++.|+.+++||+ 
T Consensus        59 ~~~l~gH~~~V~~~~~sp~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~h~~~v~~~~~s~~g~~las~~~d~~v~iw~~~  138 (380)
T 3iz6_a           59 CRTLQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQSVACGGLDSACSIFNLS  138 (380)
T ss_dssp             EEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECCCTTCCCCEECTTSSEEEECCSSSCCEEEECC
T ss_pred             eecccccccEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCccceEEecCCCCEEEEEECCCCCEEEEeeCCCcEEEEECC
Confidence            4557778888999999999999999999999999999999888877777666667778877776666666655555553 


Q ss_pred             -------------------------------------------------CC-------------CCcccEEEEEEcC-CC
Q psy10953         83 -------------------------------------------------NT-------------GHSSWVLSTAFTR-DG   99 (181)
Q Consensus        83 -------------------------------------------------~~-------------~~~~~v~~~~~s~-~~   99 (181)
                                                                       .+             +|...|.++.|+| ++
T Consensus       139 ~~~~~~~~~~~~~~~~gh~~~v~~~~~~~~~~~~l~s~s~D~~i~~wd~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~  218 (380)
T 3iz6_a          139 SQADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA  218 (380)
T ss_dssp             CCSSCCCSSTTCCBCCCCSSCCCCCBCCSSSSSCEEEECTTSCEEEECTTTCCEEEEECCCSSSSCCSCEEEEEECSSSC
T ss_pred             CCccccCCccceeeccCCCcceEEEEEecCCCCEEEEECCCCcEEEEEcCCCcEEEEeecccCCCCccCeEEEEeecCCC
Confidence                                                             21             2334567778876 78


Q ss_pred             CEEEEEeCCCcEEEEecCC-Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        100 KFFISASADHTVRVWNFAR-RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       100 ~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +++++++.|+.|++||++. ...+..+. |...|++++|+|++++|++++.|+.|++||+.++..+.....
T Consensus       219 ~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~~~~~~~~  289 (380)
T 3iz6_a          219 NMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGHQLQVYNR  289 (380)
T ss_dssp             CEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             CEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCcEEEEecc
Confidence            8999999999999999974 35555554 888999999999999999999999999999999888766554

>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A

Probab=99.96  E-value=3.3e-27  Score=192.93  Aligned_cols=163  Identities=21%  Similarity=0.348  Sum_probs=134.6

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEec------------------------------
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDT------------------------------   51 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~------------------------------   51 (181)
                      +..+..+...+.+++|+|||++||+|+.|++|++||+.+++  ....+..                              
T Consensus        52 ~~~~~~h~~~v~~~~~spdg~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~~v~~v~fs~dg~~l~~~~~~~~~~~~v  131 (611)
T 1nr0_A           52 TEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHV  131 (611)
T ss_dssp             CEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEE
T ss_pred             CeEecCCCCceEEEEECCCCcEEEEEeCCCCEEEeECCCCcceeeEeecccCCceEEEEECCCCCEEEEEECCCCceeEE
Confidence            44566677789999999999999999999999999986432  2222221                              


Q ss_pred             --------------CCceEEEEEECCCCC-EEEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCC
Q psy10953         52 --------------RGKFTLSIAYSTDGH-WIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASAD  108 (181)
Q Consensus        52 --------------~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d  108 (181)
                                    |...+.+++|+|++. .|++++.|+.+++||...        +|...|.+++|+|+|++|++++.|
T Consensus       132 ~~wd~~~~~~~l~gh~~~v~~v~f~p~~~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D  211 (611)
T 1nr0_A          132 FLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGD  211 (611)
T ss_dssp             EETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeCCCCcceecCCCCCceEEEECCCCCeEEEEEeCCCeEEEEECCCCeEeeeeccccCceEEEEECCCCCEEEEEECC
Confidence                          223455677777775 588899999999999763        588899999999999999999999


Q ss_pred             CcEEEEecCCCceeeee--------ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        109 HTVRVWNFARRENMHTF--------KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      +.|++||+.+++....+        .|.+.|++++|+|+|++|++++.|+.|++|++.+++.+...
T Consensus       212 ~~i~lwd~~~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~~~~~  277 (611)
T 1nr0_A          212 GTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI  277 (611)
T ss_dssp             SCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             CcEEEEECCCCcEeeeeccccccccccCCCEEEEEECCCCCEEEEEeCCCeEEEEeCCCCceeeee
Confidence            99999999988777665        47889999999999999999999999999999988766544

>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.3e-27  Score=182.67  Aligned_cols=150  Identities=19%  Similarity=0.359  Sum_probs=131.5

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      ..+...+.+++|+|+|++|++|+.|+++++||+.+++  ....+..|...+.+++|+|++++|++++.|+.|++||+.. 
T Consensus        58 ~~h~~~v~~~~~sp~g~~l~s~s~D~~v~iw~~~~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~s~D~~v~iwd~~~~  137 (345)
T 3fm0_A           58 EGHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEE  137 (345)
T ss_dssp             SSCSSCEEEEEECTTSSEEEEEETTSCEEEEEECCC-EEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEEECTT
T ss_pred             cccCCcEEEEEECCCCCEEEEEECCCcEEEEEccCCCeEEEEEccCCCCCceEEEEeCCCCEEEEEECCCeEEEEECCCC
Confidence            4566779999999999999999999999999998775  3456667777888999999999999999999999999863 


Q ss_pred             ----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee--eeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         85 ----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM--HTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~--~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                                +|...|.+++|+|++++|++++.|+.|++||...+...  ..+. |...|++++|+|+|++|++++.|+.
T Consensus       138 ~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~i~~w~~~~~~~~~~~~~~~h~~~v~~l~~sp~g~~l~s~s~D~~  217 (345)
T 3fm0_A          138 DEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCSDDRT  217 (345)
T ss_dssp             SCEEEEEEECCCCSCEEEEEECSSSSCEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSC
T ss_pred             CCeEEEEEecCcCCCeEEEEECCCCCEEEEEeCCCcEEEEEecCCCEEEEEEecCCCCceEEEEECCCCCEEEEEeCCCe
Confidence                      36677999999999999999999999999999876533  3443 7889999999999999999999999


Q ss_pred             EEEEeC
Q psy10953        152 VHMYSY  157 (181)
Q Consensus       152 v~i~~~  157 (181)
                      |++|+.
T Consensus       218 v~iW~~  223 (345)
T 3fm0_A          218 VRIWRQ  223 (345)
T ss_dssp             EEEEEE
T ss_pred             EEEecc
Confidence            999986

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=2.7e-27  Score=183.93  Aligned_cols=148  Identities=28%  Similarity=0.489  Sum_probs=132.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-------   85 (181)
                      .+.+++|+|+|++|++|+.|++|++||+.+++....+..|...+.+++|+|++++|++++.|+.+++||++++       
T Consensus       125 ~v~~v~~s~dg~~l~s~~~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~  204 (393)
T 1erj_A          125 YIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLS  204 (393)
T ss_dssp             BEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             eEEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEE
Confidence            4889999999999999999999999999999998888888888899999999999999999999999999865       


Q ss_pred             CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeee--------ecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         86 HSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTF--------KHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        86 ~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~--------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      +...+..++|+| +++++++++.|+.|++||++++..+..+        .|...|++++|+|+|++|++++.|+.|++|+
T Consensus       205 ~~~~v~~~~~~~~~~~~l~~~s~d~~v~iwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd  284 (393)
T 1erj_A          205 IEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWN  284 (393)
T ss_dssp             CSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEE
T ss_pred             cCCCcEEEEEECCCCCEEEEEcCCCcEEEEECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEE
Confidence            345688999999 8999999999999999999988766554        3677899999999999999999999999999


Q ss_pred             CCCC
Q psy10953        157 YKPE  160 (181)
Q Consensus       157 ~~~~  160 (181)
                      +...
T Consensus       285 ~~~~  288 (393)
T 1erj_A          285 LQNA  288 (393)
T ss_dssp             C---
T ss_pred             CCCC
Confidence            8753

>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1

Probab=99.96  E-value=5.9e-27  Score=182.00  Aligned_cols=164  Identities=26%  Similarity=0.485  Sum_probs=138.9

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC-CCCEEEEeeCCCcEEEEeC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST-DGHWIASGALDGIINIFDA   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d~   82 (181)
                      +..+..+...+.+++|+|++++|++++.|++|++||+++++....+..+.. +.+++++| ++++|++++.|+.|++||+
T Consensus       158 ~~~~~~h~~~v~~~~~~p~~~~l~s~s~d~~v~iwd~~~~~~~~~~~~~~~-v~~~~~~~~~~~~l~~~s~d~~v~iwd~  236 (393)
T 1erj_A          158 VMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDG-VTTVAVSPGDGKYIAAGSLDRAVRVWDS  236 (393)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSC-EEEEEECSTTCCEEEEEETTSCEEEEET
T ss_pred             EEEEccCCCCEEEEEEcCCCCEEEEecCCCcEEEEECCCCeeEEEEEcCCC-cEEEEEECCCCCEEEEEcCCCcEEEEEC
Confidence            455667788899999999999999999999999999999988777765444 56899999 8999999999999999998


Q ss_pred             CC---------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc------------eeeee-ecCCcEEEE
Q psy10953         83 NT---------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE------------NMHTF-KHADQVWCV  134 (181)
Q Consensus        83 ~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~------------~~~~~-~~~~~v~~~  134 (181)
                      .+               +|...|.+++|+|+|++|++++.|+.|++||++...            ....+ .|...|.++
T Consensus       237 ~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d~~v~~wd~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~  316 (393)
T 1erj_A          237 ETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSV  316 (393)
T ss_dssp             TTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC---------------CEEEEEECCSSCEEEE
T ss_pred             CCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCCCEEEEEECCCCCCcccccCCCCCcceEEEecccCcEEEE
Confidence            63               466789999999999999999999999999987532            22233 377889999


Q ss_pred             EEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +++|++++|++++.|+.|++|+..++..+....+
T Consensus       317 ~~~~~~~~l~sgs~D~~v~iwd~~~~~~~~~l~~  350 (393)
T 1erj_A          317 ATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG  350 (393)
T ss_dssp             EECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EECCCCCEEEEEeCCCeEEEEECCCCeEEEEECC
Confidence            9999999999999999999999998887765544

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.96  E-value=3e-27  Score=195.42  Aligned_cols=162  Identities=30%  Similarity=0.447  Sum_probs=146.2

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|+|++|++|+.|++|++||+.+++....+..|...+.+++|+|++++|++++.|+.|++||...
T Consensus       424 ~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~  503 (694)
T 3dm0_A          424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLG  503 (694)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTS
T ss_pred             ceecCCCCcEEEEEECCCCCEEEEEeCCCcEEEEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCC
Confidence            45667778899999999999999999999999999999999888888888889999999999999999999999999742


Q ss_pred             -----------CCcccEEEEEEcCCC--CEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         85 -----------GHSSWVLSTAFTRDG--KFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        85 -----------~~~~~v~~~~~s~~~--~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                                 +|...|.+++|+|++  ..+++++.|+.|++||+++.+....+. |...|++++|+|+|++|++++.|+
T Consensus       504 ~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~h~~~v~~v~~spdg~~l~sg~~Dg  583 (694)
T 3dm0_A          504 ECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDG  583 (694)
T ss_dssp             CEEEEECSSTTSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             CcceeeccCCCCCCCcEEEEEEeCCCCcceEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEeCCC
Confidence                       477789999999987  589999999999999999988777775 888999999999999999999999


Q ss_pred             cEEEEeCCCCeeEEEc
Q psy10953        151 AVHMYSYKPEEEVEVN  166 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~  166 (181)
                      .|++|++.+++.+...
T Consensus       584 ~i~iwd~~~~~~~~~~  599 (694)
T 3dm0_A          584 VVLLWDLAEGKKLYSL  599 (694)
T ss_dssp             BCEEEETTTTEEEECC
T ss_pred             eEEEEECCCCceEEEe
Confidence            9999999888766543

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.96  E-value=2.7e-27  Score=190.93  Aligned_cols=151  Identities=34%  Similarity=0.601  Sum_probs=134.3

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|+||+++|++++.|++|++||. +++....+..+...+.+++|+|++++|++++.|+.|++||..
T Consensus       419 ~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~-~~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~~  497 (577)
T 2ymu_A          419 LQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN  497 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEETT
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEEC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcCC
Confidence            4556667778999999999999999999999999996 466667777777778899999999999999999999999975


Q ss_pred             C-------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         84 T-------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        84 ~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      .       +|...|.+++|+|+|++|++++.|+.|++||. +++.+..+. |...|++++|+|||++|++++.|+.|++|
T Consensus       498 ~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lwd~-~~~~~~~~~~h~~~v~~~~fs~dg~~l~s~~~D~~i~~W  576 (577)
T 2ymu_A          498 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDGQTIASASSDKTVKLW  576 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEE
T ss_pred             CCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEEeC-CCCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEe
Confidence            3       47788999999999999999999999999996 556666665 88999999999999999999999999999


Q ss_pred             e
Q psy10953        156 S  156 (181)
Q Consensus       156 ~  156 (181)
                      |
T Consensus       577 d  577 (577)
T 2ymu_A          577 N  577 (577)
T ss_dssp             C
T ss_pred             C
Confidence            7

>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}

Probab=99.96  E-value=2.1e-27  Score=183.77  Aligned_cols=153  Identities=20%  Similarity=0.410  Sum_probs=133.2

Q ss_pred             cCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCC-CCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953          9 VGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus         9 ~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      .+...+.+++|+| +++++++|+.|++|++||++ .++....+..|...+.+++|+|++++|++++.|+.+++||+++++
T Consensus       203 ~h~~~v~~~~~~~~~~~~l~sgs~D~~v~~wd~~~~~~~~~~~~~h~~~v~~v~~~p~~~~l~s~s~D~~i~lwd~~~~~  282 (380)
T 3iz6_a          203 GHTADVLSLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFDMRTGH  282 (380)
T ss_dssp             SCCSCEEEEEECSSSCCEEEEEETTSCEEEEETTTTCCCCEEECCCSSCCCEEEECTTSSEEEEECSSSCEEEEETTTTE
T ss_pred             CCccCeEEEEeecCCCCEEEEEECCCeEEEEECCCCCcceEEECCcCCCeEEEEEecCCCeEEEEcCCCeEEEEECCCCc
Confidence            4556788999976 89999999999999999998 556667777777778899999999999999999999999997542


Q ss_pred             ---------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-----ecCCcEEEEEEccCCCEEEEE
Q psy10953         87 ---------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-----KHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        87 ---------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~  146 (181)
                                     ...+.+++|+|+|+++++++.|+.|++||+..++.+..+     .|.+.|++++|+|+|++|++|
T Consensus       283 ~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~dg~i~vwd~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sg  362 (380)
T 3iz6_a          283 QLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSDGSALCTG  362 (380)
T ss_dssp             EEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTTSCEEEEETTTCCEEEEECCSCSSCCCCCCEEEECSSSSEEEEE
T ss_pred             EEEEecccccccccccCceEEEEECCCCCEEEEEECCCCEEEEECCCCceEEEEecccCCCCCceEEEEECCCCCEEEEe
Confidence                           124788999999999999999999999999888766554     377889999999999999999


Q ss_pred             cCCCcEEEEeCCCCe
Q psy10953        147 GEDKAVHMYSYKPEE  161 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~  161 (181)
                      +.|+.|++|++....
T Consensus       363 s~D~~i~iW~~~~~~  377 (380)
T 3iz6_a          363 SWDKNLKIWAFSGHR  377 (380)
T ss_dssp             CTTSCEEEEECCSSS
T ss_pred             eCCCCEEEEecCCCc
Confidence            999999999997543

>3frx_A Guanine nucleotide-binding protein subunit beta- like protein; RACK1, WD40, beta propeller, ribosome, translation, acetylation; 2.13A {Saccharomyces cerevisiae} PDB: 3izb_a 3o2z_T 3o30_T 3u5c_g 3u5g_g 3rfg_A 3rfh_A 1trj_A 3jyv_R*

Probab=99.96  E-value=2.1e-26  Score=174.35  Aligned_cols=165  Identities=21%  Similarity=0.281  Sum_probs=139.2

Q ss_pred             eeeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcE
Q psy10953          4 ISKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETG-----KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      ...+..+...+.+++|+|++ ++|++|+.|++|++|++.+.     .....+..|...+.+++|+|++++|++++.|+.|
T Consensus        10 ~~~l~gH~~~V~~l~~~~~~~~~l~s~s~D~~v~~W~~~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~s~D~~v   89 (319)
T 3frx_A           10 RGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQDCTLTADGAYALSASWDKTL   89 (319)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEEEEEETTEEEEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEE
T ss_pred             EEEEccccceEEEEEccCCCccEEEEecCCccEEEecCCCCCccccccceEEeCCcccEEEEEECCCCCEEEEEeCCCEE
Confidence            44677788889999999965 89999999999999998642     2345667788888899999999999999999999


Q ss_pred             EEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccC------CCEE
Q psy10953         78 NIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPD------GDKF  143 (181)
Q Consensus        78 ~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~------g~~l  143 (181)
                      ++||+.+        +|...|.+++|+|+++++++++.|+.|++||++.........|...+.+++++|.      +..+
T Consensus        90 ~~wd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~D~~i~vwd~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~l  169 (319)
T 3frx_A           90 RLWDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLATLLGHNDWVSQVRVVPNEKADDDSVTI  169 (319)
T ss_dssp             EEEETTTTEEEEEEECCSSCEEEEEECTTSCEEEEEETTSCEEEEETTSCEEEEECCCSSCEEEEEECCC------CCEE
T ss_pred             EEEECCCCCeeEEEccCCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCeEEEEeccCCcEEEEEEccCCCCCCCccEE
Confidence            9999975        4778899999999999999999999999999976543333458888999999985      4489


Q ss_pred             EEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        144 VSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      ++++.|+.|++|++...+......+
T Consensus       170 ~s~~~d~~i~~wd~~~~~~~~~~~~  194 (319)
T 3frx_A          170 ISAGNDKMVKAWNLNQFQIEADFIG  194 (319)
T ss_dssp             EEEETTSCEEEEETTTTEEEEEECC
T ss_pred             EEEeCCCEEEEEECCcchhheeecC
Confidence            9999999999999988766554433

>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A

Probab=99.96  E-value=1.2e-26  Score=173.95  Aligned_cols=158  Identities=20%  Similarity=0.345  Sum_probs=133.3

Q ss_pred             ceeeeccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCC--CCEEEEeeCCCc
Q psy10953          3 QISKINVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTD--GHWIASGALDGI   76 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~   76 (181)
                      .+..+..+...+++++|+|  +|++|++|+.|++|++||+++++  ....+..|...+.+++|+|+  +.+|++++.|+.
T Consensus        45 ~~~~l~gH~~~V~~v~~s~~~~g~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~v~~v~~~p~~~g~~l~s~s~d~~  124 (297)
T 2pm7_B           45 LIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK  124 (297)
T ss_dssp             CCEEECCCSSCEEEEEECCGGGCSEEEEEETTTEEEEEEBSSSCBCCCEEECCCSSCEEEEEECCGGGCSEEEEEETTSE
T ss_pred             EEEEEccccCCeEEEEecCCCcCCEEEEEcCCCEEEEEEcCCCceEEEEEeecCCCceeEEEeCcCCCCcEEEEEECCCc
Confidence            3556677888899999986  48999999999999999998875  33455556777889999998  899999999999


Q ss_pred             EEEEeCCC----------CCcccEEEEEEcCC-------------CCEEEEEeCCCcEEEEecCCCc----eeeeee-cC
Q psy10953         77 INIFDANT----------GHSSWVLSTAFTRD-------------GKFFISASADHTVRVWNFARRE----NMHTFK-HA  128 (181)
Q Consensus        77 v~i~d~~~----------~~~~~v~~~~~s~~-------------~~~l~~~~~d~~i~v~d~~~~~----~~~~~~-~~  128 (181)
                      |++||++.          +|...|.+++|+|+             +++|++++.|+.|++||++++.    ....+. |.
T Consensus       125 v~~wd~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~~~~l~sgs~D~~v~lwd~~~~~~~~~~~~~l~~H~  204 (297)
T 2pm7_B          125 VSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHS  204 (297)
T ss_dssp             EEEEEBCSSSCBCCEEEECCSSCEEEEEECCCC------------CCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCS
T ss_pred             EEEEEecCCCceeeeeeecccCccceEeecCCcccccccCCCCCCcceEEEEcCCCcEEEEEEcCCCceEEEEEEecCCC
Confidence            99999864          35567899999997             5799999999999999998754    334444 78


Q ss_pred             CcEEEEEEccCC---CEEEEEcCCCcEEEEeCCCC
Q psy10953        129 DQVWCVCVAPDG---DKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       129 ~~v~~~~~sp~g---~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ..|++++|+|++   ++|++++.|+.|++|++..+
T Consensus       205 ~~V~~v~~sp~~~~~~~las~s~D~~v~iWd~~~~  239 (297)
T 2pm7_B          205 DWVRDVAWSPTVLLRSYMASVSQDRTCIIWTQDNE  239 (297)
T ss_dssp             SCEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             CceEEEEECCCCCCceEEEEEECCCcEEEEEeCCC
Confidence            899999999995   88999999999999998764

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.96  E-value=5.2e-28  Score=185.80  Aligned_cols=160  Identities=14%  Similarity=0.163  Sum_probs=130.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK---LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI   79 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~---~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i   79 (181)
                      .+..+..+...+.+++|+|++++|++++.|++|++||+.+++   ....+..+...+.+++|+|++++|++++.|+.+++
T Consensus        47 ~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  126 (377)
T 3dwl_C           47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISV  126 (377)
T ss_dssp             ECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEEEC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEE
T ss_pred             EEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEEEEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEE
Confidence            345566677789999999999999999999999999999877   44455556777889999999999999999999999


Q ss_pred             EeCCCC------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC------------------CceeeeeecCC
Q psy10953         80 FDANTG------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFAR------------------RENMHTFKHAD  129 (181)
Q Consensus        80 ~d~~~~------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~------------------~~~~~~~~~~~  129 (181)
                      ||++.+            |...|.+++|+|++++|++++.|+.|++||+..                  ++.+..+.|..
T Consensus       127 wd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  206 (377)
T 3dwl_C          127 CYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVLLAAGCADRKAYVLSAYVRDVDAKPEASVWGSRLPFNTVCAEYPSGG  206 (377)
T ss_dssp             CCC-----CCCCEEECSSCCSCEEEEEECTTSSEEEEEESSSCEEEEEECCSSCC-CCCSCSSCSCCCEEEEEECCCCSS
T ss_pred             EEECCcccceeeeEeecccCCCeEEEEEcCCCCEEEEEeCCCEEEEEEEEecccCCCccccccccccchhhhhhcccCCc
Confidence            998642            677899999999999999999999999999852                  33444446778


Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      .|.+++|+|++++|++++.|+.|++|++..++.
T Consensus       207 ~v~~~~~sp~~~~l~~~~~d~~i~iwd~~~~~~  239 (377)
T 3dwl_C          207 WVHAVGFSPSGNALAYAGHDSSVTIAYPSAPEQ  239 (377)
T ss_dssp             SEEEEEECTTSSCEEEEETTTEEC-CEECSTTS
T ss_pred             eEEEEEECCCCCEEEEEeCCCcEEEEECCCCCC
Confidence            899999999999999999999999999987754

>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}

Probab=99.95  E-value=3e-26  Score=184.80  Aligned_cols=162  Identities=30%  Similarity=0.484  Sum_probs=140.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|+|||++|++++.|++|++||. +++....+..+...+.+++|+||+++|++++.|+.+++||..
T Consensus       378 ~~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~-~~~~~~~~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~  456 (577)
T 2ymu_A          378 LQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRN  456 (577)
T ss_dssp             EEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECT-TCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EEEecCCCCCeEEEEECCCCCEEEEEeCCCEEEEEeC-CCCEEEEecCCCCCeEEEEECCCCCEEEEEcCCCEEEEEECC
Confidence            4556667778999999999999999999999999995 567777777787888899999999999999999999999975


Q ss_pred             C-------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         84 T-------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        84 ~-------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      .       +|...|.+++|+|++++|++++.|+.|++||. +++.+..+. |...|++++|+|+|++|++++.|+.|++|
T Consensus       457 ~~~~~~~~~~~~~v~~~~~spd~~~las~~~d~~i~iw~~-~~~~~~~~~~h~~~v~~l~~s~dg~~l~s~~~dg~v~lw  535 (577)
T 2ymu_A          457 GQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR-NGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLW  535 (577)
T ss_dssp             SCEEEEEECCSSCEEEEEECTTSCEEEEEETTSEEEEEET-TSCEEEEEECCSSCEEEEEECTTSSCEEEEETTSEEEEE
T ss_pred             CCEEEEEcCCCCCEEEEEEcCCCCEEEEEeCCCEEEEEcC-CCCEEEEEeCCCCCEEEEEEcCCCCEEEEEECcCEEEEE
Confidence            3       47788999999999999999999999999995 555666665 88899999999999999999999999999


Q ss_pred             eCCCCeeEEEcCC
Q psy10953        156 SYKPEEEVEVNGG  168 (181)
Q Consensus       156 ~~~~~~~~~~~~~  168 (181)
                      +. +++.+....+
T Consensus       536 d~-~~~~~~~~~~  547 (577)
T 2ymu_A          536 NR-NGQLLQTLTG  547 (577)
T ss_dssp             CT-TSCEEEEEEC
T ss_pred             eC-CCCEEEEEcC
Confidence            97 4555544433

>2xzm_R RACK1; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_R

Probab=99.95  E-value=5.6e-26  Score=173.35  Aligned_cols=156  Identities=23%  Similarity=0.362  Sum_probs=133.2

Q ss_pred             ceeeeccCeeeEEEEEE-----cC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceEEEEEECCCCCEEE
Q psy10953          3 QISKINVGPVDMWNVVF-----SP-DDKYVLSGSQSGKINLYGVETG-------KLEQIFDTRGKFTLSIAYSTDGHWIA   69 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~-----s~-~g~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~s~d~~~l~   69 (181)
                      .+..+..+...|++++|     ++ ++++|++|+.|++|++||+.+.       .....+..|...+.+++|+|++.+++
T Consensus        13 ~~~~l~gH~~~V~~~~~~~s~~~~~d~~~l~sgs~D~~v~iWd~~~~~~~~~~~~~~~~l~~h~~~V~~~~~~~~~~~l~   92 (343)
T 2xzm_R           13 KRGILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAI   92 (343)
T ss_dssp             EEEEEECCSSCEEEEEECCCSSTTCCCCEEEEEETTSCEEEEEECSSCCSSBSEEEEEEECCCSSCEEEEEECSSTTEEE
T ss_pred             eeeeeccchhhhhheeeEEEeecCCCCCEEEEEcCCCEEEEEECCcCCcccccccccchhccCCCceEEEEECCCCCEEE
Confidence            34567778888999999     76 9999999999999999998753       33455667777888999999999999


Q ss_pred             EeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee---ecCCcEEEEEEcc
Q psy10953         70 SGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---KHADQVWCVCVAP  138 (181)
Q Consensus        70 ~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~~~v~~~~~sp  138 (181)
                      +++.|+.|++||+++        +|...|.+++|+|++++|++++.|+.|++||+.........   .|...+.+++|+|
T Consensus        93 s~s~D~~v~lwd~~~~~~~~~~~~h~~~v~~v~~sp~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~~~~~~~v~~~~~~~  172 (343)
T 2xzm_R           93 SSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSP  172 (343)
T ss_dssp             EEETTSEEEEEETTSSCEEEEEECCCSCEEEEEECSSTTEEEEEETTSCEEEEESSSCEEEECCTTTSCSSCEEEEEECC
T ss_pred             EEcCCCcEEEEECCCCcEEEEEcCCCCcEEEEEECCCCCEEEEEcCCCEEEEEeccCCceeeeecccCCCceeeeeeecc
Confidence            999999999999975        47788999999999999999999999999999754333322   3667899999999


Q ss_pred             CC----------CEEEEEcCCCcEEEEeCC
Q psy10953        139 DG----------DKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       139 ~g----------~~l~~~~~d~~v~i~~~~  158 (181)
                      ++          .++++++.|+.|++|+..
T Consensus       173 ~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~  202 (343)
T 2xzm_R          173 IMKSANKVQPFAPYFASVGWDGRLKVWNTN  202 (343)
T ss_dssp             CCCSCSCCCSSCCEEEEEETTSEEEEEETT
T ss_pred             ccccccccCCCCCEEEEEcCCCEEEEEcCC
Confidence            87          789999999999999954

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.95  E-value=8.2e-26  Score=171.88  Aligned_cols=167  Identities=17%  Similarity=0.318  Sum_probs=140.1

Q ss_pred             cceeeeccCeeeEEEEEEcCC---CCEEEEEeCCCcEEEEeCCC-CcEE-EEEecCCceEEEEEECCCCCEEEEeeCCCc
Q psy10953          2 KQISKINVGPVDMWNVVFSPD---DKYVLSGSQSGKINLYGVET-GKLE-QIFDTRGKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~---g~~l~~~~~d~~i~~~d~~~-~~~~-~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      +.+..+..+...+.+++|+|+   |++|++|+.|+.|++||+.+ ++.. ..+..+...+.+++|+|++++|++++.|+.
T Consensus        30 ~~~~~~~~h~~~v~~~~~~~~~~~g~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~  109 (368)
T 3mmy_A           30 KDIEVTSSPDDSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKT  109 (368)
T ss_dssp             CCEECSSCCSSCEEEEEECCTTSSSEEEEEEETTSEEEEEEECTTSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSE
T ss_pred             ceeEeccCCCCceEEEEEcCCCCCceEEEEECCCCcEEEEEcCCCCceeEEEeccccCCEEEEEECcCCCEEEEEcCCCc
Confidence            456667778888999999999   69999999999999999987 5554 566677778889999999999999999999


Q ss_pred             EEEEeCCCC-------CcccEEEEEE--cCCCCEEEEEeCCCcEEEEecCCCceeeee----------------------
Q psy10953         77 INIFDANTG-------HSSWVLSTAF--TRDGKFFISASADHTVRVWNFARRENMHTF----------------------  125 (181)
Q Consensus        77 v~i~d~~~~-------~~~~v~~~~~--s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----------------------  125 (181)
                      |++||+.++       |...|.+++|  +|+++++++++.|+.|++||+++++.+..+                      
T Consensus       110 v~iwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  189 (368)
T 3mmy_A          110 AKMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPMMVLQLPERCYCADVIYPMAVVATAE  189 (368)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEEEECSSCEEEEEEETTSEEEEECSSCSSCSEEEECSSCEEEEEEETTEEEEEEGG
T ss_pred             EEEEEcCCCCceeeccccCceEEEEEEeCCCCCEEEEccCCCcEEEEECCCCcEEEEEecCCCceEEEecCCeeEEEeCC
Confidence            999999754       6778999999  999999999999999999998754321111                      


Q ss_pred             --------------------------------------------------------------------e-cCC-------
Q psy10953        126 --------------------------------------------------------------------K-HAD-------  129 (181)
Q Consensus       126 --------------------------------------------------------------------~-~~~-------  129 (181)
                                                                                          . |..       
T Consensus       190 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  269 (368)
T 3mmy_A          190 RGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEGRVAIHYINPPNPAKDNFTFKCHRSNGTNTSA  269 (368)
T ss_dssp             GCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTSEEEEEESSCSCHHHHSEEEECSEEC----CC
T ss_pred             CcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCCcEEEEecCCCCccccceeeeeeecccccccc
Confidence                                                                                0 111       


Q ss_pred             -----cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        130 -----QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       130 -----~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                           .|.+++|+|++++|++++.|+.|++|++.+++.+....+
T Consensus       270 ~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~  313 (368)
T 3mmy_A          270 PQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQ  313 (368)
T ss_dssp             CEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCC
T ss_pred             cccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecC
Confidence                 488999999999999999999999999998887766554

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.95  E-value=2.5e-27  Score=179.85  Aligned_cols=151  Identities=16%  Similarity=0.210  Sum_probs=116.4

Q ss_pred             eeccCeeeEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---ceEEEEEECCCCCEE-----------
Q psy10953          6 KINVGPVDMWNVVFSP---DDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---KFTLSIAYSTDGHWI-----------   68 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~---~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~s~d~~~l-----------   68 (181)
                      .+..++..+..++|+|   ++.+|++++.|++|++||+++++.+..+..+.   ..+.+++|+|+|+++           
T Consensus       173 s~~~~~~~v~~l~fs~~~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~  252 (356)
T 2w18_A          173 NQFLMPPEETILTFAEVQGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKES  252 (356)
T ss_dssp             EEEECCCSSCEEEEEEEETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC-------
T ss_pred             eeccCCCceeeEEeeccCCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcce
Confidence            3445555666778888   77889999999999999999999988886433   234567899999876           


Q ss_pred             -EEeeCCCcEEEEeCCCCCcccEEEEEEcCCC------------CEEEEEeCCCcEEEEecCCCceeeeee-cCCcEE-E
Q psy10953         69 -ASGALDGIINIFDANTGHSSWVLSTAFTRDG------------KFFISASADHTVRVWNFARRENMHTFK-HADQVW-C  133 (181)
Q Consensus        69 -~~~~~d~~v~i~d~~~~~~~~v~~~~~s~~~------------~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~-~  133 (181)
                       ++|+.|+++++||..++..-.+..+++ |+|            .++++++.|++|++||+.+++.+.++. |.+.+. .
T Consensus       253 laSGs~D~tIklWd~~tgk~l~v~~~~~-p~Gh~~~~lsg~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH~~~vvs~  331 (356)
T 2w18_A          253 ESLRSPVFQLIVINPKTTLSVGVMLYCL-PPGQAGRFLEGDVKDHCAAAILTSGTIAIWDLLLGQCTALLPPVSDQHWSF  331 (356)
T ss_dssp             -----CCEEEEEEETTTTEEEEEEEECC-CTTCCCCEEEEEEETTEEEEEETTSCEEEEETTTCSEEEEECCC--CCCCE
T ss_pred             eeccCCCcEEEEEECCCCEEEEEEEeec-cCCCcceeEccccCCCEEEEEcCCCcEEEEECCCCcEEEEecCCCCCeEEE
Confidence             557889999999987664333333333 433            468999999999999999999999886 655555 5


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeC
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      ++|||||++|++|+.|++|++|++
T Consensus       332 vafSPDG~~LaSGS~D~TIklWd~  355 (356)
T 2w18_A          332 VKWSGTDSHLLAGQKDGNIFVYHY  355 (356)
T ss_dssp             EEECSSSSEEEEECTTSCEEEEEE
T ss_pred             EEECCCCCEEEEEECCCcEEEecC
Confidence            899999999999999999999985

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=3.2e-26  Score=172.35  Aligned_cols=161  Identities=17%  Similarity=0.316  Sum_probs=135.9

Q ss_pred             eeeeccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC---------cEEEEEecCCceEEEEEECCC--CCEEEE
Q psy10953          4 ISKINVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETG---------KLEQIFDTRGKFTLSIAYSTD--GHWIAS   70 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~---------~~~~~~~~~~~~~~~~~~s~d--~~~l~~   70 (181)
                      +..+..+...+.+++|+|  |+++|++++.|++|++||++++         +....+..+...+.+++|+|+  +++|++
T Consensus        50 ~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~  129 (351)
T 3f3f_A           50 SDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLAC  129 (351)
T ss_dssp             EEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEE
T ss_pred             cceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEEecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEE
Confidence            344566778899999999  6999999999999999999877         445566667777889999999  999999


Q ss_pred             eeCCCcEEEEeCCC------------------------------------------------------------------
Q psy10953         71 GALDGIINIFDANT------------------------------------------------------------------   84 (181)
Q Consensus        71 ~~~d~~v~i~d~~~------------------------------------------------------------------   84 (181)
                      ++.|+.+++||+++                                                                  
T Consensus       130 ~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  209 (351)
T 3f3f_A          130 LGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANHLQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAK  209 (351)
T ss_dssp             EETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSCSCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEE
T ss_pred             ecCCCcEEEecCCChHHhccccccccccccccccCCcccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeee
Confidence            99999999999642                                                                  


Q ss_pred             --CCcccEEEEEEcCCC----CEEEEEeCCCcEEEEecCCC---------------------------------------
Q psy10953         85 --GHSSWVLSTAFTRDG----KFFISASADHTVRVWNFARR---------------------------------------  119 (181)
Q Consensus        85 --~~~~~v~~~~~s~~~----~~l~~~~~d~~i~v~d~~~~---------------------------------------  119 (181)
                        +|...|.+++|+|++    ++|++++.|+.|++||++.+                                       
T Consensus       210 ~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (351)
T 3f3f_A          210 LPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAE  289 (351)
T ss_dssp             CCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEEEEECC--------------------------------------
T ss_pred             cCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEeCCCCcCccccCCcccceeccCCCcccccccccccccccceeee
Confidence              244568899999998    89999999999999998764                                       


Q ss_pred             -------ceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        120 -------ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       120 -------~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                             ..+..+. |...|++++|+|++++|++++.|+.|++|++..++.+.
T Consensus       290 ~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~v~iw~~~~~~~~~  342 (351)
T 3f3f_A          290 LQSNLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFK  342 (351)
T ss_dssp             -CCSEEEEEEEEECTTSSCEEEEEECSSSCCEEEEETTSCEEEEEECTTSCEE
T ss_pred             ecccccccEEEEEecccccEEEEEEcCCCCEEEEecCCCcEEEEecCcCcchh
Confidence                   3333343 77889999999999999999999999999998876544

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=1.7e-25  Score=168.43  Aligned_cols=161  Identities=20%  Similarity=0.324  Sum_probs=143.8

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|+++++++++.|+.|++||+++++....+..+...+.+++|+|++++|++++.|+.+++||+++
T Consensus       135 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~  214 (337)
T 1gxr_A          135 AELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLRE  214 (337)
T ss_dssp             EEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTT
T ss_pred             eecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCceeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCC
Confidence            34555666789999999999999999999999999999998888877777788999999999999999999999999976


Q ss_pred             C-------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         85 G-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        85 ~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      +       +...+.+++|+|+++++++++.++.|++||+...+......|...+.+++|+|+++++++++.|+.|++|++
T Consensus       215 ~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~~  294 (337)
T 1gxr_A          215 GRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRT  294 (337)
T ss_dssp             TEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEET
T ss_pred             CceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECCCCCeEEEcCCccceeEEEECCCCCEEEEecCCCcEEEEEC
Confidence            4       456789999999999999999999999999998876655568889999999999999999999999999999


Q ss_pred             CCCeeEEE
Q psy10953        158 KPEEEVEV  165 (181)
Q Consensus       158 ~~~~~~~~  165 (181)
                      .+++.+..
T Consensus       295 ~~~~~~~~  302 (337)
T 1gxr_A          295 PYGASIFQ  302 (337)
T ss_dssp             TTCCEEEE
T ss_pred             CCCeEEEE
Confidence            98876643

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.95  E-value=2.2e-25  Score=168.34  Aligned_cols=163  Identities=23%  Similarity=0.409  Sum_probs=135.2

Q ss_pred             eeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc-----EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEE
Q psy10953          6 KINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGK-----LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI   79 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~-----~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i   79 (181)
                      .+..+...|.+++|+|+ +++|++|+.|++|++||+.+.+     ....+..|...+.+++|+|++++|++++.|+.+++
T Consensus        33 tL~GH~~~V~~v~~sp~~~~~l~S~s~D~~i~vWd~~~~~~~~~~~~~~l~~h~~~V~~~~~s~dg~~l~s~~~d~~i~~  112 (340)
T 4aow_A           33 TLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVVISSDGQFALSGSWDGTLRL  112 (340)
T ss_dssp             EECCCSSCEEEEEECTTCTTEEEEEETTSCEEEEEECCSSSCSEEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred             EECCccCCEEEEEEeCCCCCEEEEEcCCCeEEEEECCCCCcccceeeEEEeCCCCCEEEEEECCCCCEEEEEcccccceE
Confidence            46778889999999997 6899999999999999987654     23455667778889999999999999999999998


Q ss_pred             EeCCC---------------------------------------------------CCcccEEEEEEcCCC--CEEEEEe
Q psy10953         80 FDANT---------------------------------------------------GHSSWVLSTAFTRDG--KFFISAS  106 (181)
Q Consensus        80 ~d~~~---------------------------------------------------~~~~~v~~~~~s~~~--~~l~~~~  106 (181)
                      |+...                                                   +|...+..++|++++  .++++++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~d~~~~~~d~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~s~~  192 (340)
T 4aow_A          113 WDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCG  192 (340)
T ss_dssp             EETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSSCSSCEEEEEECSCSSSCEEEEEE
T ss_pred             EeecccceeeeecCCCCceeEEEEeecCccceeecCCCeEEEEEeCCCceEEEEeccccCcccceEEccCCCCcEEEEEc
Confidence            88642                                                   133456677888765  4778888


Q ss_pred             CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        107 ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       107 ~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .|+.|++||+++++....+. |...|++++|+|++++|++++.|+.|++|++.....+....+
T Consensus       193 ~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~~~~~~~~~  255 (340)
T 4aow_A          193 WDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGKHLYTLDG  255 (340)
T ss_dssp             TTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTTEEEEEEEC
T ss_pred             CCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccCceeeeecC
Confidence            99999999998888777765 788999999999999999999999999999998877655443

>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A

Probab=99.95  E-value=4.6e-25  Score=166.08  Aligned_cols=159  Identities=16%  Similarity=0.301  Sum_probs=141.1

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      .+...+.+++|+|+++++++++.|++|++||+.+++  ....+..+...+.+++|+|+++++++++.|+.+++||+++  
T Consensus        95 ~~~~~v~~~~~~~~~~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~v~~~d~~~~~  174 (337)
T 1gxr_A           95 NRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQT  174 (337)
T ss_dssp             CTTSBEEEEEECTTSSEEEEEESSSEEEEEECCCC--EEEEEEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTE
T ss_pred             CCCCcEEEEEEcCCCCEEEEEcCCCcEEEEECCCCCcceeeecccCCCceEEEEECCCCCEEEEEeCCCcEEEEeCCCCc
Confidence            456678999999999999999999999999999887  4455566677788999999999999999999999999874  


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                            .|...+.+++|+|+++++++++.|+.|++||+++++.+..+.+...+.+++|+|+++++++++.++.|++|++.
T Consensus       175 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~i~~~~~~  254 (337)
T 1gxr_A          175 LVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVN  254 (337)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred             eeeeeecccCceEEEEECCCCCEEEEEecCCcEEEEECCCCceEeeecCCCceEEEEECCCCCEEEEEcCCCcEEEEECC
Confidence                  36778999999999999999999999999999999888888888899999999999999999999999999998


Q ss_pred             CCeeEEEcC
Q psy10953        159 PEEEVEVNG  167 (181)
Q Consensus       159 ~~~~~~~~~  167 (181)
                      .++......
T Consensus       255 ~~~~~~~~~  263 (337)
T 1gxr_A          255 KPDKYQLHL  263 (337)
T ss_dssp             SSCEEEECC
T ss_pred             CCCeEEEcC
Confidence            876655433

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.95  E-value=1.4e-25  Score=174.36  Aligned_cols=157  Identities=18%  Similarity=0.249  Sum_probs=136.9

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...+.+++|+|++++|++++.|++|++||+++++....+..|...+.+++|+|++++|++++.|+.+++||+++
T Consensus       133 ~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~  212 (420)
T 3vl1_A          133 EIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGT  212 (420)
T ss_dssp             EETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEETTT
T ss_pred             eecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcCCCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCC
Confidence            34456778899999999999999999999999999999998888888888888999999999999999999999999875


Q ss_pred             C-----------CcccEEE---------------------EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCc
Q psy10953         85 G-----------HSSWVLS---------------------TAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQ  130 (181)
Q Consensus        85 ~-----------~~~~v~~---------------------~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~  130 (181)
                      +           +...+..                     ++|+|+++++++++.|+.|++||+++++.+..+.  |...
T Consensus       213 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~  292 (420)
T 3vl1_A          213 GTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCS  292 (420)
T ss_dssp             TEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTTEEEEEEETTSCEEEEETTTCCEEEEECCTTSSC
T ss_pred             CceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCCCEEEEEcCCCeEEEEECCCCceeEEcccccCCC
Confidence            3           2223333                     4568999999999999999999999988776664  6678


Q ss_pred             EEEEEEccCCC-EEEEEcCCCcEEEEeCCCCe
Q psy10953        131 VWCVCVAPDGD-KFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       131 v~~~~~sp~g~-~l~~~~~d~~v~i~~~~~~~  161 (181)
                      +++++|+|+++ ++++++.|+.|++|++..+.
T Consensus       293 v~~~~~~~~~~~~l~~g~~dg~i~vwd~~~~~  324 (420)
T 3vl1_A          293 CNSLTVDGNNANYIYAGYENGMLAQWDLRSPE  324 (420)
T ss_dssp             EEEEEECSSCTTEEEEEETTSEEEEEETTCTT
T ss_pred             ceeEEEeCCCCCEEEEEeCCCeEEEEEcCCCc
Confidence            99999999999 99999999999999998763

>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}

Probab=99.95  E-value=3.6e-27  Score=181.14  Aligned_cols=158  Identities=11%  Similarity=0.209  Sum_probs=129.8

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC--cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG--KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~--~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      |......+.....+.+++|+|+|++|++++.|++|++||+.++  +....+..|...+.+++|+|++++|++++.|+.++
T Consensus         1 m~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~d~~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~d~~v~   80 (377)
T 3dwl_C            1 MATSQVLHILPKPSYEHAFNSQRTEFVTTTATNQVELYEQDGNGWKHARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAY   80 (377)
T ss_dssp             -CCEEEEEECSSCCSCCEECSSSSEEECCCSSSCBCEEEEETTEEEECCCBCCCSSCEEEEEECTTTCCEEEEETTSSEE
T ss_pred             CCcceeEecCCCcEEEEEECCCCCEEEEecCCCEEEEEEccCCceEEEEEEecCCceEEEEEEeCCCCEEEEEeCCCeEE
Confidence            3333344445556899999999999999999999999999988  56666777777888999999999999999999999


Q ss_pred             EEeCCC-----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce---eeeee--cCCcEEEEEEccCCCE
Q psy10953         79 IFDANT-----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN---MHTFK--HADQVWCVCVAPDGDK  142 (181)
Q Consensus        79 i~d~~~-----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~~--~~~~v~~~~~sp~g~~  142 (181)
                      +||+.+           +|...|.+++|+|++++|++++.|+.|++||+..++.   ...+.  |...|++++|+|++++
T Consensus        81 vwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~  160 (377)
T 3dwl_C           81 VYEKRPDGTWKQTLVLLRLNRAATFVRWSPNEDKFAVGSGARVISVCYFEQENDWWVSKHLKRPLRSTILSLDWHPNNVL  160 (377)
T ss_dssp             EC------CCCCEEECCCCSSCEEEEECCTTSSCCEEEESSSCEEECCC-----CCCCEEECSSCCSCEEEEEECTTSSE
T ss_pred             EEEcCCCCceeeeeEecccCCceEEEEECCCCCEEEEEecCCeEEEEEECCcccceeeeEeecccCCCeEEEEEcCCCCE
Confidence            999864           3566799999999999999999999999999988763   44443  7889999999999999


Q ss_pred             EEEEcCCCcEEEEeCC
Q psy10953        143 FVSVGEDKAVHMYSYK  158 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~  158 (181)
                      |++++.|+.|++|++.
T Consensus       161 l~~~~~d~~i~iwd~~  176 (377)
T 3dwl_C          161 LAAGCADRKAYVLSAY  176 (377)
T ss_dssp             EEEEESSSCEEEEEEC
T ss_pred             EEEEeCCCEEEEEEEE
Confidence            9999999999999985

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.95  E-value=1.8e-25  Score=170.69  Aligned_cols=166  Identities=15%  Similarity=0.201  Sum_probs=141.9

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      .+..+..+...+.+++|+|++++|++++.|++|++||+++++....+  ..+...+.+++|+|++++|++++.|+.+++|
T Consensus        44 ~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~  123 (372)
T 1k8k_C           44 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  123 (372)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             eeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCCeeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEE
Confidence            45666677888999999999999999999999999999988765544  3356668899999999999999999999999


Q ss_pred             eCCC------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC------------------CCceeeeee-cCC
Q psy10953         81 DANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFA------------------RRENMHTFK-HAD  129 (181)
Q Consensus        81 d~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~------------------~~~~~~~~~-~~~  129 (181)
                      |+..            +|...|.+++|+|+++++++++.|+.|++||+.                  .+..+..+. |..
T Consensus       124 d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (372)
T 1k8k_C          124 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  203 (372)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             EecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCCCEEEEEcccccccccccccccccccchhhheEecCCCCC
Confidence            9753            356779999999999999999999999999954                  455666664 778


Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .+.+++|+|++++|++++.|+.|++|++.+++.+....+
T Consensus       204 ~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~  242 (372)
T 1k8k_C          204 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  242 (372)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             eEEEEEECCCCCEEEEEeCCCEEEEEECCCCceeEEEcc
Confidence            899999999999999999999999999988776654443

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.95  E-value=2.7e-26  Score=180.33  Aligned_cols=158  Identities=18%  Similarity=0.306  Sum_probs=132.1

Q ss_pred             eeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC--ceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          6 KINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+...|.+++|+| ++++|++|+.|++|++||++++........+.  ..+.+++|+|++++|++|+.|+.|++||+
T Consensus       159 ~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~  238 (435)
T 4e54_B          159 KGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNM  238 (435)
T ss_dssp             CCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSCEEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEES
T ss_pred             EccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCCceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeecc
Confidence            3445677899999998 78999999999999999998766544443332  33557899999999999999999999998


Q ss_pred             CC-------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeee----eecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         83 NT-------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHT----FKHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        83 ~~-------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~----~~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      +.       +|...|.+++|+|+++ ++++++.|+.|++||++..+....    ..|...|++++|+|+|++|++++.|+
T Consensus       239 ~~~~~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~iwd~~~~~~~~~~~~~~~h~~~v~~~~~spdg~~l~s~~~D~  318 (435)
T 4e54_B          239 DGKELWNLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS  318 (435)
T ss_dssp             SSCBCCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCCEEETTTCCSSSCCSBCCBCSSCEEECCBCTTSSEEEEEESSS
T ss_pred             CcceeEEEecccceEEeeeecCCCceEEEEecCcceeeEEecccccccceEEEeeeccccccceeECCCCCeeEEEcCCC
Confidence            63       4778899999999986 788999999999999987653332    34788999999999999999999999


Q ss_pred             cEEEEeCCCCeeE
Q psy10953        151 AVHMYSYKPEEEV  163 (181)
Q Consensus       151 ~v~i~~~~~~~~~  163 (181)
                      .|++|++..+...
T Consensus       319 ~i~iwd~~~~~~~  331 (435)
T 4e54_B          319 EIRVYSASQWDCP  331 (435)
T ss_dssp             CEEEEESSSSSSE
T ss_pred             EEEEEECCCCccc
Confidence            9999999877544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.95  E-value=2.8e-25  Score=171.20  Aligned_cols=155  Identities=12%  Similarity=0.208  Sum_probs=136.2

Q ss_pred             eeeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEECC-CCCEEEEeeCCCcEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETGKLEQIFD--TRGKFTLSIAYST-DGHWIASGALDGIINI   79 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i   79 (181)
                      +..+..+...+.+++|+|++ ++|++|+.|++|++||+.+++....+.  .+...+.+++|+| ++++|++++.|+.+++
T Consensus        66 ~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~i  145 (383)
T 3ei3_B           66 HRTASPFDRRVTSLEWHPTHPTTVAVGSKGGDIILWDYDVQNKTSFIQGMGPGDAITGMKFNQFNTNQLFVSSIRGATTL  145 (383)
T ss_dssp             EEEECCCSSCEEEEEECSSCTTEEEEEEBTSCEEEEETTSTTCEEEECCCSTTCBEEEEEEETTEEEEEEEEETTTEEEE
T ss_pred             EEeccCCCCCEEEEEECCCCCCEEEEEcCCCeEEEEeCCCcccceeeecCCcCCceeEEEeCCCCCCEEEEEeCCCEEEE
Confidence            44566777889999999999 999999999999999999888877765  3667788999999 7799999999999999


Q ss_pred             EeCCCC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCC-EEEEEc
Q psy10953         80 FDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGD-KFVSVG  147 (181)
Q Consensus        80 ~d~~~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~-~l~~~~  147 (181)
                      ||+...          +...|.+++|+|+++++++++.|+.|++||++ ++.+..+. |...|.+++|+|+++ ++++++
T Consensus       146 wd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~  224 (383)
T 3ei3_B          146 RDFSGSVIQVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLD-GHEIFKEKLHKAKVTHAEFNPRCDWLMATSS  224 (383)
T ss_dssp             EETTSCEEEEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETT-SCEEEEEECSSSCEEEEEECSSCTTEEEEEE
T ss_pred             EECCCCceEEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECC-CCEEEEeccCCCcEEEEEECCCCCCEEEEEe
Confidence            998742          34679999999999999999999999999994 55555554 888999999999999 899999


Q ss_pred             CCCcEEEEeCCC
Q psy10953        148 EDKAVHMYSYKP  159 (181)
Q Consensus       148 ~d~~v~i~~~~~  159 (181)
                      .|+.|++|++..
T Consensus       225 ~d~~i~iwd~~~  236 (383)
T 3ei3_B          225 VDATVKLWDLRN  236 (383)
T ss_dssp             TTSEEEEEEGGG
T ss_pred             CCCEEEEEeCCC
Confidence            999999999986

>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}

Probab=99.95  E-value=6.1e-26  Score=174.45  Aligned_cols=155  Identities=20%  Similarity=0.375  Sum_probs=125.7

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCcEE----EEEecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQ------SGKINLYGVETGKLE----QIFDTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~------d~~i~~~d~~~~~~~----~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      .++..+.+++|||||++|++|+.      |+++++|+..++...    .....+...+.+++|+|+++ +++++.|+.|+
T Consensus        40 ~H~~~V~~v~fSpDG~~las~s~d~~~~wd~~v~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~s~d~~-~l~~s~dg~v~  118 (357)
T 4g56_B           40 CMEVQIGAVRYRRDGALLLAASSLSSRTWGGSIWVFKDPEGAPNESLCTAGVQTEAGVTDVAWVSEKG-ILVASDSGAVE  118 (357)
T ss_dssp             CCCSEEEEEEECSSSCEEEEEECSSSSSCCEEEEEESSCC---CGGGCSEEEECSSCEEEEEEETTTE-EEEEETTSCEE
T ss_pred             cccCCEEEEEECCCCCEEEEEcCCCCccccCeEEEEECCCCCcceeEecccCCCCCCEEEEEEcCCCC-EEEEECCCEEE
Confidence            35667899999999999999997      678999998766532    12223445578999999986 55678899999


Q ss_pred             EEeCCC------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCC-EEE
Q psy10953         79 IFDANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGD-KFV  144 (181)
Q Consensus        79 i~d~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~-~l~  144 (181)
                      +||+.+            +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|++++|+|+++ .++
T Consensus       119 lWd~~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~sgs~dg~v~iwd~~~~~~~~~~~~h~~~v~~v~~s~~~~~~~~  198 (357)
T 4g56_B          119 LWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIFL  198 (357)
T ss_dssp             EC--------CCCCEEECCCSSCEEEEEECSSSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTCSSCEE
T ss_pred             EeeccccceeEEEeeccCCCCCCEEEEEECCCCCEEEEEeCCCeEEEEECCCCcEEEEEcCCCCCEEEEEEccCCCceee
Confidence            999853            466789999999999999999999999999999998888876 788999999999985 788


Q ss_pred             EEcCCCcEEEEeCCCCeeEE
Q psy10953        145 SVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~  164 (181)
                      +++.|+.|++||+.+++.+.
T Consensus       199 s~~~dg~v~~wd~~~~~~~~  218 (357)
T 4g56_B          199 SCGEDGRILLWDTRKPKPAT  218 (357)
T ss_dssp             EEETTSCEEECCTTSSSCBC
T ss_pred             eeccCCceEEEECCCCceee
Confidence            99999999999998776543

>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A

Probab=99.95  E-value=3.2e-25  Score=166.86  Aligned_cols=154  Identities=14%  Similarity=0.244  Sum_probs=130.8

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC----cEEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEE
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETG----KLEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIF   80 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~   80 (181)
                      +..+...+.+++|+|++++|++++.|++|++||+.++    +....+..+...+.+++|+|  ++++|++++.|+.|++|
T Consensus         7 ~~gH~~~v~~~~~~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~d~~~l~s~~~dg~v~vw   86 (351)
T 3f3f_A            7 DSGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVKLW   86 (351)
T ss_dssp             ECCCSSCEEEEEECSSSSEEEEEETTSEEEEEEECSSSCCEEEEEEEECCSSCEEEEEECCGGGCSEEEEEETTSCEEEE
T ss_pred             CcccccceeEEEEcCCCCEEEEeeCCCeEEEEECCCCCCcceecceeccCCCcEEEEEEcCCCCCCEEEEEcCCCeEEEE
Confidence            3457778999999999999999999999999999876    35556667777888999999  69999999999999999


Q ss_pred             eCCC-----------------CCcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCce--------------------
Q psy10953         81 DANT-----------------GHSSWVLSTAFTRD--GKFFISASADHTVRVWNFARREN--------------------  121 (181)
Q Consensus        81 d~~~-----------------~~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~--------------------  121 (181)
                      |+..                 +|...|.+++|+|+  ++++++++.|+.|++||+++++.                    
T Consensus        87 d~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~  166 (351)
T 3f3f_A           87 EEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEPSDLRSWTLTSEMKVLSIPPANH  166 (351)
T ss_dssp             EECTTSCTTSSCSEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTCEEEEEECSSTTCTTCCEEEEEEESCSCCCSSC
T ss_pred             ecCCCcccccccCcceeeeecccCCceeEEEEcCCCCCcEEEEecCCCcEEEecCCChHHhccccccccccccccccCCc
Confidence            9864                 35567999999999  99999999999999999865331                    


Q ss_pred             ----------------------------------------eeee-ecCCcEEEEEEccCC----CEEEEEcCCCcEEEEe
Q psy10953        122 ----------------------------------------MHTF-KHADQVWCVCVAPDG----DKFVSVGEDKAVHMYS  156 (181)
Q Consensus       122 ----------------------------------------~~~~-~~~~~v~~~~~sp~g----~~l~~~~~d~~v~i~~  156 (181)
                                                              +..+ .|...|.+++|+|++    ++|++++.|+.|++|+
T Consensus       167 ~~~~~~~~~~p~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~i~~~~~~p~~~~~~~~l~s~~~dg~i~iwd  246 (351)
T 3f3f_A          167 LQSDFCLSWCPSRFSPEKLAVSALEQAIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQLIATGCKDGRIRIFK  246 (351)
T ss_dssp             SCCCEEEEECCCSSSCCEEEEEETTEEEEEEECTTSCEEEEEECCCCCSCEEEEEECCCSSCSSEEEEEEETTSCEEEEE
T ss_pred             ccceeEEEeccCCCCCcEEEEecCCCcEEEEccCCCceeeeeecCCCCcceeEEEECCCCCCcceEEEEEcCCCeEEEEe
Confidence                                                    1122 266789999999998    8999999999999999


Q ss_pred             CCCC
Q psy10953        157 YKPE  160 (181)
Q Consensus       157 ~~~~  160 (181)
                      +..+
T Consensus       247 ~~~~  250 (351)
T 3f3f_A          247 ITEK  250 (351)
T ss_dssp             EEEC
T ss_pred             CCCC
Confidence            9764

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=2e-26  Score=174.22  Aligned_cols=153  Identities=17%  Similarity=0.235  Sum_probs=127.4

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEEeCC
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+...+.+++|+|+|++|++|+.|++|++||+++++  ....+..|...+.+++|++  ++++|++++.|+.|++||++
T Consensus        10 ~~H~~~V~~v~~s~~g~~lasgs~D~~v~lwd~~~~~~~~~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~   89 (316)
T 3bg1_A           10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE   89 (316)
T ss_dssp             ----CCEEEEEECGGGCEEEEEETTTEEEEEEEETTEEEEEEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCS
T ss_pred             ccccCeEEEeeEcCCCCEEEEEeCCCeEEEEEecCCCcEEEEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECC
Confidence            3577789999999999999999999999999998775  3456677888888999986  48999999999999999986


Q ss_pred             CC----------CcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCcee---eee-ecCCcEEEEEEccC--------
Q psy10953         84 TG----------HSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENM---HTF-KHADQVWCVCVAPD--------  139 (181)
Q Consensus        84 ~~----------~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~---~~~-~~~~~v~~~~~sp~--------  139 (181)
                      ++          |...|.+++|+|+  +++|++++.|+.|++||++.....   ..+ .|...+.+++|+|+        
T Consensus        90 ~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~  169 (316)
T 3bg1_A           90 NGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLID  169 (316)
T ss_dssp             SSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCEEEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC-----
T ss_pred             CCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCEEEEecCCCCCcceeeeeccccCCcceEEEccccCCccccc
Confidence            53          6677899999998  789999999999999999875322   222 36678899999998        


Q ss_pred             ---------CCEEEEEcCCCcEEEEeCCCC
Q psy10953        140 ---------GDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       140 ---------g~~l~~~~~d~~v~i~~~~~~  160 (181)
                               +++|++++.|+.|++|++..+
T Consensus       170 ~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~  199 (316)
T 3bg1_A          170 HPSGQKPNYIKRFASGGCDNLIKLWKEEED  199 (316)
T ss_dssp             -CCSCCCCCCCBEECCBTTSBCCEEEECTT
T ss_pred             cccccCccccceEEEecCCCeEEEEEeCCC
Confidence                     478999999999999999754

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.6e-25  Score=171.09  Aligned_cols=158  Identities=25%  Similarity=0.355  Sum_probs=136.4

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEEecCCceEEEEEECCC--CCEEEEeeCCCcEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE--TGKLEQIFDTRGKFTLSIAYSTD--GHWIASGALDGIIN   78 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v~   78 (181)
                      .+..+..+...+.+++|+|++++|++|+.|++|++||+.  +++....+..|...+.+++|+++  +++|++++.|+.|+
T Consensus         3 ~~~~~~~h~~~v~~~~~s~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~   82 (379)
T 3jrp_A            3 MVVIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVL   82 (379)
T ss_dssp             --CCEEECCCCEEEEEECSSSSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEE
T ss_pred             ccEEecCCcccEEEEEEcCCCCEEEEEECCCcEEEEecCCCcceeeeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEE
Confidence            455677788889999999999999999999999999998  55666677777778889999987  99999999999999


Q ss_pred             EEeCCCC----------CcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCceee--ee-ecCCcEEEEEEcc-----
Q psy10953         79 IFDANTG----------HSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENMH--TF-KHADQVWCVCVAP-----  138 (181)
Q Consensus        79 i~d~~~~----------~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~~--~~-~~~~~v~~~~~sp-----  138 (181)
                      +||+..+          |...|.+++|+|+  ++++++++.|+.|++||+.......  .+ .|...|.+++|+|     
T Consensus        83 iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~  162 (379)
T 3jrp_A           83 IWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEE  162 (379)
T ss_dssp             EEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCTTSCCCEEEEECCTTCEEEEEECCCC---
T ss_pred             EEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcEEEEecCCCCceeeEEecCCCCceEEEEEcCccccc
Confidence            9998653          6678999999999  9999999999999999998764322  22 4778899999999     


Q ss_pred             --------CCCEEEEEcCCCcEEEEeCCCC
Q psy10953        139 --------DGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       139 --------~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                              +++++++++.|+.|++|++..+
T Consensus       163 ~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  192 (379)
T 3jrp_A          163 DGEHNGTKESRKFVTGGADNLVKIWKYNSD  192 (379)
T ss_dssp             -------CTTCEEEEEETTSCEEEEEEETT
T ss_pred             cccccCCCCCCEEEEEeCCCeEEEEEecCC
Confidence                    6999999999999999998765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.94  E-value=1.1e-25  Score=188.00  Aligned_cols=162  Identities=24%  Similarity=0.386  Sum_probs=144.3

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +....+..+...+.+++|+|+|++|++++.|++|++||+.+++....+..+...+.+++|+|++++|++++.|+.+++||
T Consensus         4 ~~~~~~~~h~~~v~~i~~sp~~~~la~~~~~g~v~iwd~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~   83 (814)
T 3mkq_A            4 DIKKTFSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIWNYETQVEVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFN   83 (814)
T ss_dssp             CCEEEEEEECSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEE
T ss_pred             ccceeeecCCCceEEEEECCCCCEEEEEeCCCEEEEEECCCCceEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEE
Confidence            35567777888899999999999999999999999999999999988888888888999999999999999999999999


Q ss_pred             CCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC-ceeeeee-cCCcEEEEEEcc-CCCEEEEEcCCC
Q psy10953         82 ANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARR-ENMHTFK-HADQVWCVCVAP-DGDKFVSVGEDK  150 (181)
Q Consensus        82 ~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~-~~~~~~~-~~~~v~~~~~sp-~g~~l~~~~~d~  150 (181)
                      +.+        +|...|.+++|+|+++++++++.|+.|++||+.++ .....+. |...+.+++|+| +++.+++++.|+
T Consensus        84 ~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg  163 (814)
T 3mkq_A           84 YNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDR  163 (814)
T ss_dssp             TTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEGGGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTS
T ss_pred             CCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEECCCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCC
Confidence            875        36778999999999999999999999999999876 4444444 778899999999 889999999999


Q ss_pred             cEEEEeCCCCeeE
Q psy10953        151 AVHMYSYKPEEEV  163 (181)
Q Consensus       151 ~v~i~~~~~~~~~  163 (181)
                      .|++|++..+...
T Consensus       164 ~v~vwd~~~~~~~  176 (814)
T 3mkq_A          164 TVKVWSLGQSTPN  176 (814)
T ss_dssp             EEEEEETTCSSCS
T ss_pred             eEEEEECCCCcce
Confidence            9999999766443

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.7e-25  Score=166.57  Aligned_cols=163  Identities=16%  Similarity=0.315  Sum_probs=142.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC-----CcE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD-----GII   77 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d-----~~v   77 (181)
                      .+..+..+...+.+++|+|++++|++++.|++|++||+.+++....+. +...+.+++|+|+++++++++.+     +.+
T Consensus        66 ~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i  144 (369)
T 3zwl_B           66 RLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVSNGQCVATWK-SPVPVKRVEFSPCGNYFLAILDNVMKNPGSI  144 (369)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTCCEEEEEE-CSSCEEEEEECTTSSEEEEEECCBTTBCCEE
T ss_pred             hhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcEEEEee-cCCCeEEEEEccCCCEEEEecCCccCCCCEE
Confidence            455667778889999999999999999999999999999999988887 55567799999999999999998     999


Q ss_pred             EEEeCCCC-------------------Ccc--cEEEEEEcCCCCEEEEEeCCCcEEEEecCC-Cceeeeee-cCCcEEEE
Q psy10953         78 NIFDANTG-------------------HSS--WVLSTAFTRDGKFFISASADHTVRVWNFAR-RENMHTFK-HADQVWCV  134 (181)
Q Consensus        78 ~i~d~~~~-------------------~~~--~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~-~~~~v~~~  134 (181)
                      .+||+...                   +..  .+.+++|+|+++++++++.|+.|++||+++ ...+..+. |...|.++
T Consensus       145 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~v~~~  224 (369)
T 3zwl_B          145 NIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGKYIIAGHKDGKISKYDVSNNYEYVDSIDLHEKSISDM  224 (369)
T ss_dssp             EEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEECGGGCEEEEEETTSEEEEEETTTTTEEEEEEECCSSCEEEE
T ss_pred             EEEEecCCccceeecccccceeeeccCCcCccceeEEEEcCCCCEEEEEcCCCEEEEEECCCCcEeEEEEecCCCceeEE
Confidence            99997532                   112  789999999999999999999999999998 56666665 77889999


Q ss_pred             EEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      +|+|++++|++++.|+.|++|++.++..+...
T Consensus       225 ~~~~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  256 (369)
T 3zwl_B          225 QFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY  256 (369)
T ss_dssp             EECTTSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred             EECCCCCEEEEecCCceEEEEECCCCceeeee
Confidence            99999999999999999999999887665543

>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}

Probab=99.94  E-value=5.3e-25  Score=167.44  Aligned_cols=164  Identities=15%  Similarity=0.238  Sum_probs=140.9

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ...+..+...+.+++|+|+|++|++++.|+.|++||+.+++....+..+...+.+++|+|++++|++++.|+.|++||+.
T Consensus        25 ~~~l~~h~~~v~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~  104 (369)
T 3zwl_B           25 AIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDVS  104 (369)
T ss_dssp             EEEEECCSSCEEEEEECTTSCEEEEEESSSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETT
T ss_pred             cEEEEEeeceEEEEEEcCCCCEEEEEeCCCEEEEEeCCCchhhhhhhhcCCcEEEEEEcCCCCEEEEEeCCCeEEEEECC
Confidence            45577788889999999999999999999999999999999998888888888899999999999999999999999997


Q ss_pred             CC-------CcccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCce-----------eeee-ecCC--cEEEEEEc
Q psy10953         84 TG-------HSSWVLSTAFTRDGKFFISASAD-----HTVRVWNFARREN-----------MHTF-KHAD--QVWCVCVA  137 (181)
Q Consensus        84 ~~-------~~~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~~-----------~~~~-~~~~--~v~~~~~s  137 (181)
                      ++       +...+.+++|+|+++++++++.+     +.|++||+.....           ...+ .+..  .+.+++|+
T Consensus       105 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (369)
T 3zwl_B          105 NGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMKNPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWS  184 (369)
T ss_dssp             TCCEEEEEECSSCEEEEEECTTSSEEEEEECCBTTBCCEEEEEEEEECTTTCCEEEECSSCSEEEECCTTCCCEEEEEEC
T ss_pred             CCcEEEEeecCCCeEEEEEccCCCEEEEecCCccCCCCEEEEEEecCCccceeecccccceeeeccCCcCccceeEEEEc
Confidence            64       45678999999999999999998     9999999875432           1122 2333  79999999


Q ss_pred             cCCCEEEEEcCCCcEEEEeCCC-CeeEEEcC
Q psy10953        138 PDGDKFVSVGEDKAVHMYSYKP-EEEVEVNG  167 (181)
Q Consensus       138 p~g~~l~~~~~d~~v~i~~~~~-~~~~~~~~  167 (181)
                      |+++++++++.|+.|++|++.. +..+....
T Consensus       185 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  215 (369)
T 3zwl_B          185 TKGKYIIAGHKDGKISKYDVSNNYEYVDSID  215 (369)
T ss_dssp             GGGCEEEEEETTSEEEEEETTTTTEEEEEEE
T ss_pred             CCCCEEEEEcCCCEEEEEECCCCcEeEEEEe
Confidence            9999999999999999999988 55554333

>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*

Probab=99.94  E-value=7.1e-26  Score=177.96  Aligned_cols=151  Identities=15%  Similarity=0.256  Sum_probs=125.4

Q ss_pred             CeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEECC-CCCEEEEeeCCCcEEEEeCCCC
Q psy10953         10 GPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYST-DGHWIASGALDGIINIFDANTG   85 (181)
Q Consensus        10 ~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~-d~~~l~~~~~d~~v~i~d~~~~   85 (181)
                      +...|.+++|+| ++++||+|+.||+|++||+.+++....+  ..|...+.+++|+| ++++|++++.|++|++||++..
T Consensus       118 ~~~~V~~l~~~P~~~~~lasGs~dg~i~lWd~~~~~~~~~~~~~gH~~~V~~l~f~p~~~~~l~s~s~D~~v~iwd~~~~  197 (435)
T 4e54_B          118 FDRRATSLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYASSMEGTTRLQDFKGN  197 (435)
T ss_dssp             CSSCEEEEEECSSCTTCEEEEETTSCEEEECSSCCSCCEEECCCSSSCCCCEEEECSSCTTEEEEECSSSCEEEEETTSC
T ss_pred             CCCCEEEEEEeCCCCCEEEEEeCCCEEEEEECCCCCceeEEEccCCCCCEEEEEEeCCCCCEEEEEeCCCEEEEeeccCC
Confidence            344589999999 5678999999999999999877654443  34667788999998 6899999999999999998743


Q ss_pred             ----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCC-EEEEEcCCCcEE
Q psy10953         86 ----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGD-KFVSVGEDKAVH  153 (181)
Q Consensus        86 ----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~-~l~~~~~d~~v~  153 (181)
                                +...+.+++|+|++++|++++.|+.|++||+.... +..+ .|...|.+++|+|+++ ++++++.|+.|+
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~dg~i~~wd~~~~~-~~~~~~h~~~v~~v~~~p~~~~~~~s~s~d~~v~  276 (435)
T 4e54_B          198 ILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKE-LWNLRMHKKKVTHVALNPCCDWFLATASVDQTVK  276 (435)
T ss_dssp             EEEEEECCSSCSCCCCCEEEETTTTEEEEECSSSBEEEEESSSCB-CCCSBCCSSCEEEEEECTTCSSEEEEEETTSBCC
T ss_pred             ceeEEeccCCCCccEEEEEECCCCCEEEEEeCCCcEeeeccCcce-eEEEecccceEEeeeecCCCceEEEEecCcceee
Confidence                      23356789999999999999999999999987644 3344 4888999999999987 678899999999


Q ss_pred             EEeCCCCe
Q psy10953        154 MYSYKPEE  161 (181)
Q Consensus       154 i~~~~~~~  161 (181)
                      +||+....
T Consensus       277 iwd~~~~~  284 (435)
T 4e54_B          277 IWDLRQVR  284 (435)
T ss_dssp             EEETTTCC
T ss_pred             EEeccccc
Confidence            99987643

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.94  E-value=2.3e-25  Score=173.02  Aligned_cols=158  Identities=17%  Similarity=0.296  Sum_probs=138.3

Q ss_pred             eeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC-------cEEEEEecCCceEEEEEECCCC-CEEEEeeCC
Q psy10953          4 ISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETG-------KLEQIFDTRGKFTLSIAYSTDG-HWIASGALD   74 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~-------~~~~~~~~~~~~~~~~~~s~d~-~~l~~~~~d   74 (181)
                      +..+..+...+.+++|+| ++++|++|+.|++|++||+.++       +....+..|...+.+++|+|++ .+|++++.|
T Consensus        74 ~~~~~~h~~~V~~~~~~p~~~~~l~s~s~dg~v~vw~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~d  153 (402)
T 2aq5_A           74 VPLVCGHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCD  153 (402)
T ss_dssp             CCCBCCCSSCEEEEEECTTCTTEEEEEETTSEEEEEECCTTCCSSCBCSCSEEEECCSSCEEEEEECSSBTTEEEEEETT
T ss_pred             CceEecCCCCEEEEEeCCCCCCEEEEEeCCCeEEEEEccCCCCccccCCceEEecCCCCeEEEEEECcCCCCEEEEEcCC
Confidence            445566778899999999 9999999999999999999987       4566777778888899999998 699999999


Q ss_pred             CcEEEEeCCC----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-e-cCCc-EEEEEEccCCC
Q psy10953         75 GIINIFDANT----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-K-HADQ-VWCVCVAPDGD  141 (181)
Q Consensus        75 ~~v~i~d~~~----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~-~~~~-v~~~~~sp~g~  141 (181)
                      +.|++||+.+          +|...|.+++|+|++++|++++.|+.|++||+++++.+..+ . |.+. +.+++|+|+++
T Consensus       154 g~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (402)
T 2aq5_A          154 NVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRVIEPRKGTVVAEKDRPHEGTRPVHAVFVSEGK  233 (402)
T ss_dssp             SCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEEEETTTTEEEEEEECSSCSSSCCEEEECSTTE
T ss_pred             CEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEEEeCCCCceeeeeccCCCCCcceEEEEcCCCc
Confidence            9999999863          46778999999999999999999999999999998888776 3 5444 88999999999


Q ss_pred             EEEEE---cCCCcEEEEeCCCCe
Q psy10953        142 KFVSV---GEDKAVHMYSYKPEE  161 (181)
Q Consensus       142 ~l~~~---~~d~~v~i~~~~~~~  161 (181)
                      +++++   +.|+.|++|++..+.
T Consensus       234 ~l~~g~~~~~d~~i~iwd~~~~~  256 (402)
T 2aq5_A          234 ILTTGFSRMSERQVALWDTKHLE  256 (402)
T ss_dssp             EEEEEECTTCCEEEEEEETTBCS
T ss_pred             EEEEeccCCCCceEEEEcCcccc
Confidence            99999   789999999997754

>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C

Probab=99.94  E-value=4.5e-25  Score=168.55  Aligned_cols=151  Identities=9%  Similarity=0.110  Sum_probs=132.5

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      ..+...+.+++|+|++++|++++.|+.|++||+.+++  ....+..+...+.+++|+|++++|++++.|+.+++||+.+ 
T Consensus         5 ~~~~~~i~~~~~s~~~~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~   84 (372)
T 1k8k_C            5 SFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGR   84 (372)
T ss_dssp             ESCSSCCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETT
T ss_pred             cccCCCeEEEEECCCCCEEEEEeCCCEEEEEeCCCCcEEeeeeecCCCCcccEEEEeCCCCEEEEEcCCCeEEEEECCCC
Confidence            3466678999999999999999999999999999887  6677777777888999999999999999999999999854 


Q ss_pred             ---------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce---eeee--ecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         85 ---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN---MHTF--KHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        85 ---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                               .|...|.+++|+|+++++++++.|+.|++||+.....   ...+  .|...|.+++|+|+++++++++.|+
T Consensus        85 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~i~d~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg  164 (372)
T 1k8k_C           85 TWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDF  164 (372)
T ss_dssp             EEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTS
T ss_pred             eeeeeEEeecCCCceeEEEECCCCCEEEEEeCCCEEEEEEecCCCcceeeeeeecccCCCeeEEEEcCCCCEEEEEcCCC
Confidence                     3567799999999999999999999999999987653   2222  3677899999999999999999999


Q ss_pred             cEEEEeCC
Q psy10953        151 AVHMYSYK  158 (181)
Q Consensus       151 ~v~i~~~~  158 (181)
                      .|++|++.
T Consensus       165 ~i~~~d~~  172 (372)
T 1k8k_C          165 KCRIFSAY  172 (372)
T ss_dssp             CEEEEECC
T ss_pred             CEEEEEcc
Confidence            99999953

>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A

Probab=99.94  E-value=1.5e-25  Score=174.19  Aligned_cols=154  Identities=18%  Similarity=0.213  Sum_probs=133.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------C
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--------G   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~   85 (181)
                      .....|+|++++|++++.|+.|++||+.+++....+..|...+.+++|+|++++|++++.|+.|++||+.+        +
T Consensus       100 ~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~~~~~~~~~~l~s~s~d~~i~iwd~~~~~~~~~~~~  179 (420)
T 3vl1_A          100 TAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIG  179 (420)
T ss_dssp             EEEEEECSSSCEEEEEETTSCEEEECTTSCEEEEETTSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCCCEEEEC
T ss_pred             eEEEEEecCCCEEEEEECCCCEEEEeCCCcceeeecccccCccEEEEECCCCCEEEEEeCCCeEEEEeCCCCcCceEEcC
Confidence            44557899999999999999999999999988887777888889999999999999999999999999874        3


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEE---------------------EEccCC
Q psy10953         86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCV---------------------CVAPDG  140 (181)
Q Consensus        86 ~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~---------------------~~sp~g  140 (181)
                      |...|.+++|+|++++|++++.|+.|++||+++++.+..+.    +...+.++                     +|+|++
T Consensus       180 h~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~  259 (420)
T 3vl1_A          180 HRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYG  259 (420)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECBTTBTTCCEEEEEEEECCCSSCGGGCCCCCCTTCSSCTT
T ss_pred             CCCcEEEEEEcCCCCEEEEEcCCCcEEEeECCCCceeEEeecCCCCCCCccEEEEecCCcceeeecccCcccceEEcCCC
Confidence            67789999999999999999999999999999988777664    33344444                     457899


Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        141 DKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       141 ~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      +++++++.|+.|++|++..++.+....
T Consensus       260 ~~l~~~~~dg~i~i~d~~~~~~~~~~~  286 (420)
T 3vl1_A          260 KYVIAGHVSGVITVHNVFSKEQTIQLP  286 (420)
T ss_dssp             EEEEEEETTSCEEEEETTTCCEEEEEC
T ss_pred             CEEEEEcCCCeEEEEECCCCceeEEcc
Confidence            999999999999999998887665443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.94  E-value=1.3e-24  Score=162.73  Aligned_cols=155  Identities=20%  Similarity=0.400  Sum_probs=126.7

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC----------------------------------
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR----------------------------------   52 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------------------------------   52 (181)
                      +..+...+.+++|+|+|++|++|+.|++|++||+++++.+..+..|                                  
T Consensus        63 ~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~~~h~~~~~~~~~~~~~l~s~~~~~~~~~~~~~~~~~~  142 (318)
T 4ggc_A           63 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH  142 (318)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             ecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEecCccceEEEeecCCCEEEEEecCCceEeeecCCCcee
Confidence            3456667999999999999999999999999999988776544322                                  


Q ss_pred             -------CceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC---------------------------------------
Q psy10953         53 -------GKFTLSIAYSTDGHWIASGALDGIINIFDANTGH---------------------------------------   86 (181)
Q Consensus        53 -------~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~---------------------------------------   86 (181)
                             ...+..+.+++++++|++++.|+.+++||+.++.                                       
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  222 (318)
T 4ggc_A          143 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  222 (318)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCBTTBSCCSEEECCCCSCEEEEEECTTSTTEEEEEECTTTCE
T ss_pred             EEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCCcccccceeeecccCCceEEEEecCCCCcEEEEEecCCCCE
Confidence                   2234567888999999999999999999975310                                       


Q ss_pred             -----------------cccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEE
Q psy10953         87 -----------------SSWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        87 -----------------~~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~  146 (181)
                                       ...+..+.|+|+++.+++++  .|+.|++||+.+++.+..+. |.+.|++++|+|+|++|+++
T Consensus       223 i~lwd~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~sg~~d~~i~iwd~~~~~~~~~l~gH~~~V~~l~~spdg~~l~S~  302 (318)
T 4ggc_A          223 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  302 (318)
T ss_dssp             EEEEETTTCCEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEecccccccccccceeeeeeeeecccccceEEEEEcCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence                             11245567888888776654  78999999999999888886 88999999999999999999


Q ss_pred             cCCCcEEEEeCCCCe
Q psy10953        147 GEDKAVHMYSYKPEE  161 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~  161 (181)
                      |.|+.|++|++....
T Consensus       303 s~D~~v~iWd~~~~d  317 (318)
T 4ggc_A          303 AADETLRLWRCFELD  317 (318)
T ss_dssp             ETTTEEEEECCSCCC
T ss_pred             ecCCeEEEEECCCCC
Confidence            999999999986543

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.94  E-value=3.4e-25  Score=173.42  Aligned_cols=163  Identities=12%  Similarity=0.266  Sum_probs=135.6

Q ss_pred             ceeee-ccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCC---Cc---EEEEEecCCceEEEEEECCCCCEEEEeeCC
Q psy10953          3 QISKI-NVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVET---GK---LEQIFDTRGKFTLSIAYSTDGHWIASGALD   74 (181)
Q Consensus         3 ~~~~~-~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~---~~---~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d   74 (181)
                      .+..+ ..+...+.+++|+| ++++|++|+.|++|++||+.+   +.   ....+ .+...+.+++|+|++++|++++.|
T Consensus        54 ~~~~~~~~h~~~V~~~~~s~~~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~l~s~s~d  132 (437)
T 3gre_A           54 LIATLMENEPNSITSSAVSPGETPYLITGSDQGVIKIWNLKEIIVGEVYSSSLTY-DCSSTVTQITMIPNFDAFAVSSKD  132 (437)
T ss_dssp             EEEEECTTTTSCEEEEEEECSSSCEEEEEETTSEEEEEEHHHHHTTCCCSCSEEE-ECSSCEEEEEECTTSSEEEEEETT
T ss_pred             EEeeeccCCCCceEEEEECCCCCCEEEEecCCceEEEeECcccccCcccceeeec-cCCCCEEEEEEeCCCCEEEEEeCC
Confidence            34556 56778899999999 999999999999999999876   43   12233 356678899999999999999999


Q ss_pred             CcEEEEeCC---CC--------------------CcccEEEEE--EcCCCCEEEEEeCCCcEEEEecCCCceeeeee---
Q psy10953         75 GIINIFDAN---TG--------------------HSSWVLSTA--FTRDGKFFISASADHTVRVWNFARRENMHTFK---  126 (181)
Q Consensus        75 ~~v~i~d~~---~~--------------------~~~~v~~~~--~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---  126 (181)
                      +.|++||+.   .+                    +...+.++.  ++++++++++++.|+.|++||+++++.+..+.   
T Consensus       133 g~i~vwd~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~  212 (437)
T 3gre_A          133 GQIIVLKVNHYQQESEVKFLNCECIRKINLKNFGKNEYAVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSP  212 (437)
T ss_dssp             SEEEEEEEEEEEETTEEEEEEEEEEEEEEGGGGSSCCCEEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCG
T ss_pred             CEEEEEEeccccCCceeeccccceeEEEEccCcccccCceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCC
Confidence            999999984   21                    233344444  56789999999999999999999988887775   


Q ss_pred             cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       127 ~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      |...|++++|+|++++|++++.|+.|++|++..++.+...
T Consensus       213 h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~  252 (437)
T 3gre_A          213 RHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIRSW  252 (437)
T ss_dssp             GGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEEEE
T ss_pred             CCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEEEE
Confidence            6788999999999999999999999999999988877654

>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a

Probab=99.94  E-value=1.2e-24  Score=164.35  Aligned_cols=154  Identities=17%  Similarity=0.285  Sum_probs=129.0

Q ss_pred             ccCeeeEEEEEEcCCC--CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q psy10953          8 NVGPVDMWNVVFSPDD--KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG   85 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g--~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~   85 (181)
                      ..+...+..++|++++  .++++++.|++|++||+++++....+..+...+.+++|+|++++|++++.|+.+++||+.+.
T Consensus       168 ~~~~~~v~~~~~~~~~~~~~~~s~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~Dg~i~iwd~~~~  247 (340)
T 4aow_A          168 ESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEG  247 (340)
T ss_dssp             SSCSSCEEEEEECSCSSSCEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTCEEEEEETTTT
T ss_pred             ccccCcccceEEccCCCCcEEEEEcCCCEEEEEECCCCceeeEecCCCCcEEEEEECCCCCEEEEEeCCCeEEEEEeccC
Confidence            3345567889998765  46789999999999999999998888888888889999999999999999999999999764


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee----------ecCCcEEEEEEccCCCEEEEEcC
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF----------KHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----------~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                             +...+..+.|+|++.++ +++.|+.|++||+..+..+..+          .|...|++++|+|+|++|++++.
T Consensus       248 ~~~~~~~~~~~v~~~~~~~~~~~~-~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~  326 (340)
T 4aow_A          248 KHLYTLDGGDIINALCFSPNRYWL-CAATGPSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYT  326 (340)
T ss_dssp             EEEEEEECSSCEEEEEECSSSSEE-EEEETTEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEET
T ss_pred             ceeeeecCCceEEeeecCCCCcee-eccCCCEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeC
Confidence                   34568899999988765 4556899999999887655443          25678999999999999999999


Q ss_pred             CCcEEEEeCCCCee
Q psy10953        149 DKAVHMYSYKPEEE  162 (181)
Q Consensus       149 d~~v~i~~~~~~~~  162 (181)
                      |+.|++|++.+|.+
T Consensus       327 Dg~v~iW~~~tGtr  340 (340)
T 4aow_A          327 DNLVRVWQVTIGTR  340 (340)
T ss_dssp             TSCEEEEEEEC---
T ss_pred             CCEEEEEeCCCcCC
Confidence            99999999988753

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.94  E-value=2.7e-25  Score=173.91  Aligned_cols=151  Identities=13%  Similarity=0.272  Sum_probs=128.8

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------EEEEEecCC------------ceEEEEEECCCC--
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-----------LEQIFDTRG------------KFTLSIAYSTDG--   65 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-----------~~~~~~~~~------------~~~~~~~~s~d~--   65 (181)
                      ...+.+++|+|+|++|++|+.|+.|++||+.+++           ....+..|.            ..+.+++|+|++  
T Consensus        28 ~~~V~~v~~s~~g~~la~g~~dg~v~iw~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~V~~l~~~~~~~~  107 (447)
T 3dw8_B           28 ADIISTVEFNHSGELLATGDKGGRVVIFQQEQENKIQSHSRGEYNVYSTFQSHEPEFDYLKSLEIEEKINKIRWLPQKNA  107 (447)
T ss_dssp             GGSEEEEEECSSSSEEEEEETTSEEEEEEECC-----CCCCCCEEEEEEEECCCCEEEGGGTEEECCCCCEEEECCCCSS
T ss_pred             cCcEEEEEECCCCCEEEEEcCCCeEEEEEecCCCCCCcccccceeEecccccccccccccccccccCceEEEEEcCCCCc
Confidence            4568999999999999999999999999998776           456666675            557899999998  


Q ss_pred             CEEEEeeCCCcEEEEeCC------------------------------------------------CCCcccEEEEEEcC
Q psy10953         66 HWIASGALDGIINIFDAN------------------------------------------------TGHSSWVLSTAFTR   97 (181)
Q Consensus        66 ~~l~~~~~d~~v~i~d~~------------------------------------------------~~~~~~v~~~~~s~   97 (181)
                      ..|++++.|+.|++||+.                                                .+|...|.+++|+|
T Consensus       108 ~~l~s~s~d~~i~iw~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~  187 (447)
T 3dw8_B          108 AQFLLSTNDKTIKLWKISERDKRPEGYNLKEEDGRYRDPTTVTTLRVPVFRPMDLMVEASPRRIFANAHTYHINSISINS  187 (447)
T ss_dssp             SEEEEEECSSCEEEEEEEEEEEEEECCSCC--------CCCCCSCCCCEEEEEEEEEEEEEEEEECSCCSSCCCEEEECT
T ss_pred             ceEEEeCCCCeEEEEecccccCCcceecccCccccccCcccccceEeccccchheeeeccceEEeccCCCcceEEEEEcC
Confidence            789999999999999974                                                35778899999999


Q ss_pred             CCCEEEEEeCCCcEEEEecCC-Cceeee-------e-ecCCcEEEEEEccCC-CEEEEEcCCCcEEEEeCCCCee
Q psy10953         98 DGKFFISASADHTVRVWNFAR-RENMHT-------F-KHADQVWCVCVAPDG-DKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~-~~~~~~-------~-~~~~~v~~~~~sp~g-~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      ++++|+++ .|+.|++||+.. ...+..       + .|...|++++|+|++ ++|++++.|+.|++|++..+..
T Consensus       188 ~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~  261 (447)
T 3dw8_B          188 DYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIRLCDMRASAL  261 (447)
T ss_dssp             TSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEEEEETTTCSS
T ss_pred             CCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEEEEECcCCcc
Confidence            99999998 799999999984 333332       2 377789999999998 9999999999999999988765

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.94  E-value=3.5e-25  Score=170.84  Aligned_cols=151  Identities=21%  Similarity=0.341  Sum_probs=135.6

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec---C---CceEEEEEECCCCCEEEEeeCC---CcEEE
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT---R---GKFTLSIAYSTDGHWIASGALD---GIINI   79 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~---~---~~~~~~~~~s~d~~~l~~~~~d---~~v~i   79 (181)
                      .+...+.+++|+|++ ++++++.|+.|++||+++++....+..   +   ...+.+++|+|++++|++++.|   +.+++
T Consensus       184 ~~~~~i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i  262 (397)
T 1sq9_A          184 TPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITL  262 (397)
T ss_dssp             SSCCCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEE
T ss_pred             CCCCCceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEE
Confidence            356668999999999 999999999999999999998888887   6   7778899999999999999999   99999


Q ss_pred             EeCCC--------C-------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-------c----
Q psy10953         80 FDANT--------G-------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-------H----  127 (181)
Q Consensus        80 ~d~~~--------~-------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~----  127 (181)
                      ||+.+        +             |...|.+++|+|++++|++++.|+.|++||+.+++.+..+.       |    
T Consensus       263 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~  342 (397)
T 1sq9_A          263 YETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDI  342 (397)
T ss_dssp             EETTTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGC
T ss_pred             EECCCCcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEecccCcccchhhh
Confidence            99863        3             67789999999999999999999999999999988887776       4    


Q ss_pred             -----------CCcEEEEEEccCC----------CEEEEEcCCCcEEEEeCCCC
Q psy10953        128 -----------ADQVWCVCVAPDG----------DKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       128 -----------~~~v~~~~~sp~g----------~~l~~~~~d~~v~i~~~~~~  160 (181)
                                 ...|++++|+|++          ++|++++.|+.|++|++.++
T Consensus       343 ~~g~~~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~l~s~~~dg~i~iw~~~~g  396 (397)
T 1sq9_A          343 LAVDEHGDSLAEPGVFDVKFLKKGWRSGMGADLNESLCCVCLDRSIRWFREAGG  396 (397)
T ss_dssp             CCBCTTSCBCSSCCEEEEEEECTTTSBSTTCTTSCEEEEEETTTEEEEEEEEC-
T ss_pred             hccccccccccCCceeEEEeccccccccccccccceEEEecCCCcEEEEEcCCC
Confidence                       6789999999998          79999999999999999765

>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A

Probab=99.94  E-value=6.6e-26  Score=171.36  Aligned_cols=156  Identities=19%  Similarity=0.311  Sum_probs=130.6

Q ss_pred             eeeeccCeeeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCC--CCEEEEeeCCCcE
Q psy10953          4 ISKINVGPVDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTD--GHWIASGALDGII   77 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v   77 (181)
                      +..+..+...+++++|+|  ++++|++|+.|++|++||+++++  ....+..|...+.+++|+|+  +.+|++++.|+.+
T Consensus        50 ~~~l~gH~~~V~~v~~~~~~~~~~l~s~s~D~~v~iWd~~~~~~~~~~~~~~h~~~V~~v~~~p~~~g~~lasgs~D~~i  129 (316)
T 3bg1_A           50 IADLRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAI  129 (316)
T ss_dssp             EEEEECCSSCEEEEEECCGGGSSCEEEEETTSCEEEECCSSSCCCEEEEECCCSSCCCEEEECCTTTCSCEEEECSSSCE
T ss_pred             EEEEcCCCccEEEEEeCCCCCCCEEEEEECCCEEEEEECCCCcceEEEEccCCCCceEEEEECCCCCCcEEEEEcCCCCE
Confidence            455667888899999986  48999999999999999999874  44455567777889999998  7899999999999


Q ss_pred             EEEeCCC-----------CCcccEEEEEEcCC-----------------CCEEEEEeCCCcEEEEecCCC---ceeeeee
Q psy10953         78 NIFDANT-----------GHSSWVLSTAFTRD-----------------GKFFISASADHTVRVWNFARR---ENMHTFK  126 (181)
Q Consensus        78 ~i~d~~~-----------~~~~~v~~~~~s~~-----------------~~~l~~~~~d~~i~v~d~~~~---~~~~~~~  126 (181)
                      ++||+..           +|...+.+++|+|+                 +++|++++.|+.|++||+...   .....+.
T Consensus       130 ~lwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~sgs~D~~v~lWd~~~~~~~~~~~~l~  209 (316)
T 3bg1_A          130 SLLTYTGEGQWEVKKINNAHTIGCNAVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLE  209 (316)
T ss_dssp             EEEEECSSSCEEECCBTTSSSSCBCCCEECCCCCC------CCSCCCCCCCBEECCBTTSBCCEEEECTTSCEEEEECCB
T ss_pred             EEEecCCCCCcceeeeeccccCCcceEEEccccCCccccccccccCccccceEEEecCCCeEEEEEeCCCCccceeeecc
Confidence            9999753           35567888999997                 478999999999999999754   2344444


Q ss_pred             -cCCcEEEEEEccCC----CEEEEEcCCCcEEEEeCCC
Q psy10953        127 -HADQVWCVCVAPDG----DKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       127 -~~~~v~~~~~sp~g----~~l~~~~~d~~v~i~~~~~  159 (181)
                       |...|++++|+|++    ++|++++.|+.|++|++..
T Consensus       210 ~h~~~V~~v~~sp~~~~~~~~las~s~D~~v~iw~~~~  247 (316)
T 3bg1_A          210 AHSDWVRDVAWAPSIGLPTSTIASCSQDGRVFIWTCDD  247 (316)
T ss_dssp             CCSSCEEEEECCCCSSCSCCEEEEEETTCEEEEEECSS
T ss_pred             cCCCceEEEEecCCCCCCCceEEEEcCCCeEEEEEccC
Confidence             78889999999987    8899999999999999865

>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}

Probab=99.94  E-value=1.2e-24  Score=179.92  Aligned_cols=164  Identities=25%  Similarity=0.389  Sum_probs=138.4

Q ss_pred             eeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCC-----cEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          5 SKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETG-----KLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~-----~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      ..+..|...|++++|+|++ ++|++|+.|++|++|++...     .....+..|...+.+++|+|++++|++++.|+.|+
T Consensus       376 ~~l~~H~~~V~~v~~~~~~~~~l~s~s~D~~i~~W~~~~~~~~~~~~~~~~~~h~~~v~~v~~s~~g~~l~sgs~Dg~v~  455 (694)
T 3dm0_A          376 GTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGELR  455 (694)
T ss_dssp             EEEECCSSCEEEEECCTTCCSEEEEEETTSEEEEEECCCSTTCSCEEEEEEECCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             hhcccCCceeEEEEecCCCCCEEEEEeCCCcEEEEEccCCCcccccccceecCCCCcEEEEEECCCCCEEEEEeCCCcEE
Confidence            3467788889999999875 78999999999999998754     23456667888888999999999999999999999


Q ss_pred             EEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee----ecCCcEEEEEEccCC--CEEE
Q psy10953         79 IFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF----KHADQVWCVCVAPDG--DKFV  144 (181)
Q Consensus        79 i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~~~~~sp~g--~~l~  144 (181)
                      +||+.+        +|...|.+++|+|++++|++++.|++|++||..........    .|...|.+++|+|++  ..++
T Consensus       456 vwd~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~l~  535 (694)
T 3dm0_A          456 LWDLAAGVSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIV  535 (694)
T ss_dssp             EEETTTTEEEEEEECCSSCEEEEEECTTSSCEEEEETTSCEEEECTTSCEEEEECSSTTSCSSCEEEEEECSCSSSCEEE
T ss_pred             EEECCCCcceeEEeCCCCCEEEEEEeCCCCEEEEEeCCCEEEEEECCCCcceeeccCCCCCCCcEEEEEEeCCCCcceEE
Confidence            999875        47888999999999999999999999999998665433222    366789999999987  5799


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +++.|+.|++|++..+.......+
T Consensus       536 s~s~d~~v~vwd~~~~~~~~~~~~  559 (694)
T 3dm0_A          536 SASWDKTVKVWNLSNCKLRSTLAG  559 (694)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECC
T ss_pred             EEeCCCeEEEEECCCCcEEEEEcC
Confidence            999999999999988776655544

>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*

Probab=99.94  E-value=6e-25  Score=169.29  Aligned_cols=153  Identities=16%  Similarity=0.286  Sum_probs=133.1

Q ss_pred             cCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecC---CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          9 VGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTR---GKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~---~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      .+...+.+++|+| ++++|++++.|++|++||+++... ..+..+   ...+.+++|+|++++|++++.|+.+++||+..
T Consensus       116 ~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i~d~~~  194 (383)
T 3ei3_B          116 GPGDAITGMKFNQFNTNQLFVSSIRGATTLRDFSGSVI-QVFAKTDSWDYWYCCVDVSVSRQMLATGDSTGRLLLLGLDG  194 (383)
T ss_dssp             STTCBEEEEEEETTEEEEEEEEETTTEEEEEETTSCEE-EEEECCCCSSCCEEEEEEETTTTEEEEEETTSEEEEEETTS
T ss_pred             CcCCceeEEEeCCCCCCEEEEEeCCCEEEEEECCCCce-EEEeccCCCCCCeEEEEECCCCCEEEEECCCCCEEEEECCC
Confidence            4777899999999 789999999999999999996443 444332   25578999999999999999999999999853


Q ss_pred             -------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCC----CceeeeeecCCcEEEEEEcc-CCCEEEEEcCCCc
Q psy10953         85 -------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFAR----RENMHTFKHADQVWCVCVAP-DGDKFVSVGEDKA  151 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~----~~~~~~~~~~~~v~~~~~sp-~g~~l~~~~~d~~  151 (181)
                             +|...|.+++|+|+++ ++++++.|+.|++||+++    +..+..+.|...|.+++|+| ++++|++++.|+.
T Consensus       195 ~~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~~~~~d~~  274 (383)
T 3ei3_B          195 HEIFKEKLHKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTDSTKLLTTDQRNE  274 (383)
T ss_dssp             CEEEEEECSSSCEEEEEECSSCTTEEEEEETTSEEEEEEGGGCCSTTCEEEEEECSSCEEEEEECTTTSCEEEEEESSSE
T ss_pred             CEEEEeccCCCcEEEEEECCCCCCEEEEEeCCCEEEEEeCCCCCcccceEEEecCCCceEEEEEcCCCCCEEEEEcCCCc
Confidence                   4678899999999999 999999999999999987    55666677889999999999 9999999999999


Q ss_pred             EEEEeCCCCee
Q psy10953        152 VHMYSYKPEEE  162 (181)
Q Consensus       152 v~i~~~~~~~~  162 (181)
                      |++|++.++..
T Consensus       275 i~iwd~~~~~~  285 (383)
T 3ei3_B          275 IRVYSSYDWSK  285 (383)
T ss_dssp             EEEEETTBTTS
T ss_pred             EEEEECCCCcc
Confidence            99999987643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.94  E-value=1.3e-24  Score=188.86  Aligned_cols=158  Identities=22%  Similarity=0.375  Sum_probs=143.3

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      +..+...+++++|+|+|+++++|+.|++|++||+.+++....+..|...+.+++|+|++++|++++.|+.|++||+.+  
T Consensus       611 ~~~h~~~v~~~~~s~~~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~  690 (1249)
T 3sfz_A          611 VRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGK  690 (1249)
T ss_dssp             ECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             EecccccEEEEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCc
Confidence            345677799999999999999999999999999999999988888888889999999999999999999999999975  


Q ss_pred             ------CCcccEEEEEEcC--CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 ------GHSSWVLSTAFTR--DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 ------~~~~~v~~~~~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                            +|...|.+++|+|  ++.++++++.|+.|++||+.++.....+. |...|++++|+|+++++++++.|+.|++|
T Consensus       691 ~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vwd~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vw  770 (1249)
T 3sfz_A          691 LVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLW  770 (1249)
T ss_dssp             EEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEEETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEE
T ss_pred             eEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEEECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEE
Confidence                  4677899999999  45689999999999999999998877765 88899999999999999999999999999


Q ss_pred             eCCCCeeEE
Q psy10953        156 SYKPEEEVE  164 (181)
Q Consensus       156 ~~~~~~~~~  164 (181)
                      ++..+....
T Consensus       771 d~~~~~~~~  779 (1249)
T 3sfz_A          771 DVRSANERK  779 (1249)
T ss_dssp             EGGGTEEEE
T ss_pred             eCCCCcccc
Confidence            998876554

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.3e-25  Score=180.74  Aligned_cols=153  Identities=13%  Similarity=0.150  Sum_probs=129.5

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-EEEEEecCCceEEEE--EECCCC-CEEEEeeCCCcEEEEe
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSI--AYSTDG-HWIASGALDGIINIFD   81 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~--~~s~d~-~~l~~~~~d~~v~i~d   81 (181)
                      .+..+...+.+++|+|++ .|++|+.||+|++||+++++ ....+..|...+.++  .|+|++ ++|++++.|++|++||
T Consensus       261 ~l~~h~~~v~sv~~s~~~-~lasgs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD  339 (524)
T 2j04_B          261 TLSLADSLITTFDFLSPT-TVVCGFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFN  339 (524)
T ss_dssp             EECCTTTCEEEEEESSSS-EEEEEETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEEC
T ss_pred             EEEcCCCCEEEEEecCCC-eEEEEeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEE
Confidence            445566778999999864 79999999999999998764 345566777778888  678888 8999999999999999


Q ss_pred             CCCC--------Cc--ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         82 ANTG--------HS--SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        82 ~~~~--------~~--~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      ++++        |.  ..|.+++|+|+++.+++++.|++|++||++++..+..+ .|.+.|++++|||+|++|++|+.|+
T Consensus       340 ~~~~~~~~~~~~~~~~~~v~~v~fsp~~~~l~s~~~d~tv~lwd~~~~~~~~~l~gH~~~V~sva~Sp~g~~l~Sgs~Dg  419 (524)
T 2j04_B          340 PKDIATTKTTVSRFRGSNLVPVVYCPQIYSYIYSDGASSLRAVPSRAAFAVHPLVSRETTITAIGVSRLHPMVLAGSADG  419 (524)
T ss_dssp             GGGHHHHCEEEEECSCCSCCCEEEETTTTEEEEECSSSEEEEEETTCTTCCEEEEECSSCEEEEECCSSCCBCEEEETTT
T ss_pred             CCCCCcccccccccccCcccceEeCCCcCeEEEeCCCCcEEEEECcccccceeeecCCCceEEEEeCCCCCeEEEEECCC
Confidence            8642        22  23678999999999999999999999999998776655 4888999999999999999999999


Q ss_pred             cEEEEeCCC
Q psy10953        151 AVHMYSYKP  159 (181)
Q Consensus       151 ~v~i~~~~~  159 (181)
                      .|++|+...
T Consensus       420 tv~lwd~~~  428 (524)
T 2j04_B          420 SLIITNAAR  428 (524)
T ss_dssp             EEECCBSCS
T ss_pred             EEEEEechH
Confidence            999999753

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.94  E-value=6.9e-25  Score=169.71  Aligned_cols=154  Identities=15%  Similarity=0.242  Sum_probs=136.9

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|+|++++|++++.|+.|++||+++++....+..+...+.+++|+|++ .+++++.|+.+++||+.
T Consensus       240 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~  318 (425)
T 1r5m_A          240 TGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLK  318 (425)
T ss_dssp             SEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETT
T ss_pred             eeeeccCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECC
Confidence            34555667778999999999999999999999999999998888887777778899999999 99999999999999997


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc--------------------eeeeee-cCC--cEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE--------------------NMHTFK-HAD--QVW  132 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~--------------------~~~~~~-~~~--~v~  132 (181)
                      ++        |...+.+++|+|++++|++++.|+.|++||+.+..                    .+..+. |..  .|.
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~s~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  398 (425)
T 1r5m_A          319 QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYDLKKLNSKSRSLYGNRDGILNPLPIPLYASYQSSQDNDYIF  398 (425)
T ss_dssp             TTEEEEEEECTTCCEEEEEECTTSSEEEEEETTSCEEEEECHHHHC--------------CEECCEEEEECCTTCCCCEE
T ss_pred             CCcEeEecccCCccEEEEEEcCCCCEEEEEECCCeEEEEECCCCccceeeeecccccccCcccchhhhhhcCcccCCceE
Confidence            53        56789999999999999999999999999998776                    666665 444  899


Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        133 CVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       133 ~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +++|+|++++|++++.|+.|++|+++
T Consensus       399 ~~~~s~~~~~l~~~~~dg~i~iw~~~  424 (425)
T 1r5m_A          399 DLSWNCAGNKISVAYSLQEGSVVAIP  424 (425)
T ss_dssp             EEEECTTSSEEEEEESSSCCEEEECC
T ss_pred             EEEccCCCceEEEEecCceEEEEeec
Confidence            99999999999999999999999985

>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.8e-24  Score=165.21  Aligned_cols=157  Identities=20%  Similarity=0.378  Sum_probs=135.5

Q ss_pred             eeeeccCeeeEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCC--CCEEEEeeCCCcE
Q psy10953          4 ISKINVGPVDMWNVVFSPD--DKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTD--GHWIASGALDGII   77 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~--g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v   77 (181)
                      +..+..+...+.+++|+|+  +++|++++.|++|++||+.+++  ....+..+...+.+++|+|+  +.+|++++.|+.+
T Consensus        48 ~~~~~~h~~~v~~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~d~~i  127 (379)
T 3jrp_A           48 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV  127 (379)
T ss_dssp             EEEECCCSSCEEEEEECCGGGCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             eeEecCCCCcEEEEEeCCCCCCCEEEEeccCCEEEEEEcCCCceeEeeeecCCCcceEEEEeCCCCCCCEEEEecCCCcE
Confidence            4456667788999999987  9999999999999999999887  45555566777889999999  9999999999999


Q ss_pred             EEEeCCCC----------CcccEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCCce----eeeee-cCC
Q psy10953         78 NIFDANTG----------HSSWVLSTAFTR-------------DGKFFISASADHTVRVWNFARREN----MHTFK-HAD  129 (181)
Q Consensus        78 ~i~d~~~~----------~~~~v~~~~~s~-------------~~~~l~~~~~d~~i~v~d~~~~~~----~~~~~-~~~  129 (181)
                      ++||+...          |...|.+++|+|             +++++++++.|+.|++||++.+..    ...+. |..
T Consensus       128 ~v~d~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~h~~  207 (379)
T 3jrp_A          128 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  207 (379)
T ss_dssp             EEEECCTTSCCCEEEEECCTTCEEEEEECCCC----------CTTCEEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEecCCCCceeeEEecCCCCceEEEEEcCccccccccccCCCCCCEEEEEeCCCeEEEEEecCCCcceeeEEEEecccC
Confidence            99998753          556789999999             699999999999999999986542    23333 778


Q ss_pred             cEEEEEEccC---CCEEEEEcCCCcEEEEeCCCC
Q psy10953        130 QVWCVCVAPD---GDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       130 ~v~~~~~sp~---g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      .|.+++|+|+   +++|++++.|+.|++|++..+
T Consensus       208 ~v~~~~~sp~~~~~~~l~s~~~dg~i~iwd~~~~  241 (379)
T 3jrp_A          208 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  241 (379)
T ss_dssp             CEEEEEECCCCSSSEEEEEEETTSCEEEEEESST
T ss_pred             cEeEEEECCCCCCCCeEEEEeCCCEEEEEeCCCC
Confidence            8999999999   899999999999999999875

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.94  E-value=7.2e-25  Score=167.13  Aligned_cols=148  Identities=11%  Similarity=0.232  Sum_probs=122.6

Q ss_pred             eeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953         12 VDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus        12 ~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      ..+.+++|+|  +++++++++.|++|++||+++++....... +...+.+++|+|++++|++|+.|+.|++||+++    
T Consensus       126 ~~v~~~~~~~~~~~~~l~s~s~dg~i~~wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~  205 (343)
T 3lrv_A          126 NEIIYMYGHNEVNTEYFIWADNRGTIGFQSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQA  205 (343)
T ss_dssp             SCEEEEECCC---CCEEEEEETTCCEEEEESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSC
T ss_pred             CCEEEEEcCCCCCCCEEEEEeCCCcEEEEECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCC
Confidence            5689999999  999999999999999999999998766533 344567899999999999999999999999863    


Q ss_pred             -----C-CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcE--EEEEEccCCCEEEEEcC-CCc
Q psy10953         85 -----G-HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK----HADQV--WCVCVAPDGDKFVSVGE-DKA  151 (181)
Q Consensus        85 -----~-~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v--~~~~~sp~g~~l~~~~~-d~~  151 (181)
                           . |...|.+++|+|+|++|++++ ++.|++||++..+.+..+.    +...+  .+++|+|+|++|++++. |+.
T Consensus       206 ~~~~~~~h~~~v~~l~fs~~g~~l~s~~-~~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~s~~d~~  284 (343)
T 3lrv_A          206 SSRFPVDEEAKIKEVKFADNGYWMVVEC-DQTVVCFDLRKDVGTLAYPTYTIPEFKTGTVTYDIDDSGKNMIAYSNESNS  284 (343)
T ss_dssp             CEECCCCTTSCEEEEEECTTSSEEEEEE-SSBEEEEETTSSTTCBSSCCCBC-----CCEEEEECTTSSEEEEEETTTTE
T ss_pred             ccEEeccCCCCEEEEEEeCCCCEEEEEe-CCeEEEEEcCCCCcceeecccccccccccceEEEECCCCCEEEEecCCCCc
Confidence                 2 677899999999999999999 5599999999876654433    22223  36999999999999988 999


Q ss_pred             EEEEeCCCC
Q psy10953        152 VHMYSYKPE  160 (181)
Q Consensus       152 v~i~~~~~~  160 (181)
                      +++|++...
T Consensus       285 i~v~~~~~~  293 (343)
T 3lrv_A          285 LTIYKFDKK  293 (343)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEccc
Confidence            999998554

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.94  E-value=4.9e-25  Score=167.66  Aligned_cols=157  Identities=20%  Similarity=0.347  Sum_probs=136.8

Q ss_pred             ceeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953          3 QISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIF---DTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      .+..+..+...+.+++|+| ++++|++++.|++|++||+++++....+   ..+...+.+++|+|++++|++++.|+.++
T Consensus       107 ~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~  186 (366)
T 3k26_A          107 CIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEKIMSCGMDHSLK  186 (366)
T ss_dssp             EEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred             EeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCEEEEecCCCCEE
Confidence            4556667788899999999 9999999999999999999999988877   45677788999999999999999999999


Q ss_pred             EEeCCCC------------------------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-
Q psy10953         79 IFDANTG------------------------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-  121 (181)
Q Consensus        79 i~d~~~~------------------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-  121 (181)
                      +||++++                                    |...|.+++|+  ++++++++.|+.|++||+.+... 
T Consensus       187 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~~~~~d~~i~~wd~~~~~~~  264 (366)
T 3k26_A          187 LWRINSKRMMNAIKESYDYNPNKTNRPFISQKIHFPDFSTRDIHRNYVDCVRWL--GDLILSKSCENAIVCWKPGKMEDD  264 (366)
T ss_dssp             EEESCSHHHHHHHHHHHTCCGGGCSSCCCCEEECCCSEEECSSCSSCCCEEEEE--TTEEEEECSSSEEEEEEESSTTCC
T ss_pred             EEECCCCccccccceeEEecCCCCcccccceeeccCccccccCCcceEEEEEEc--CCEEEEEecCCEEEEEeCCCcccc
Confidence            9998743                                    77788999998  77999999999999999877543 


Q ss_pred             -------------eeeee-cCCcEEEEEEccC--CCEEEEEcCCCcEEEEeCCCCe
Q psy10953        122 -------------MHTFK-HADQVWCVCVAPD--GDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       122 -------------~~~~~-~~~~v~~~~~sp~--g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                                   +..+. |...|++++|+|+  +++|++++.|+.|++|++..++
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~~l~~~~~dg~i~vwd~~~~~  320 (366)
T 3k26_A          265 IDKIKPSESNVTILGRFDYSQCDIWYMRFSMDFWQKMLALGNQVGKLYVWDLEVED  320 (366)
T ss_dssp             GGGCCTTCCCEEEEEEEECSSCCSSCCCCEECTTSSEEEEECTTSCEEEEECCSSS
T ss_pred             ccccccCCcchheeccccccCCcEEEEEEcCCCCCcEEEEEecCCcEEEEECCCCC
Confidence                         33443 6678999999999  9999999999999999998764

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.94  E-value=1.9e-24  Score=170.43  Aligned_cols=154  Identities=15%  Similarity=0.287  Sum_probs=135.2

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCC--CCcEEEEEe--cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVE--TGKLEQIFD--TRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~--~~~~~~~~~--~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---   84 (181)
                      .+++++|+|+|++| ++++.|++|++||+.  +++....+.  .+...+.+++|+|++++|++++.++.+++|++..   
T Consensus       104 ~v~~~~~s~d~~~l~~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~  183 (450)
T 2vdu_B          104 YIRNLRLTSDESRLIACADSDKSLLVFDVDKTSKNVLKLRKRFCFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPE  183 (450)
T ss_dssp             CEEEEEECTTSSEEEEEEGGGTEEEEEEECSSSSSCEEEEEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCC
T ss_pred             ceEEEEEcCCCCEEEEEECCCCeEEEEECcCCCCceeeeeecccCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCccc
Confidence            58999999999996 899999999999998  888877765  3456678999999999999999999999999753   


Q ss_pred             ---------CCcccEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         85 ---------GHSSWVLSTAFTRD---GKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        85 ---------~~~~~v~~~~~s~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                               +|...|.+++|+|+   +++|++++.|+.|++||+.++..+..+  .|...|++++|+ ++++|++++.|+
T Consensus       184 ~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~  262 (450)
T 2vdu_B          184 EKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISHYPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDD  262 (450)
T ss_dssp             SSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEEESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSS
T ss_pred             ccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEECCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCC
Confidence                     25567999999999   999999999999999999988877663  478899999999 999999999999


Q ss_pred             cEEEEeCCCCeeEEEcC
Q psy10953        151 AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~  167 (181)
                      .|++|++.+++.+....
T Consensus       263 ~v~vwd~~~~~~~~~~~  279 (450)
T 2vdu_B          263 KIFAWDWKTGKNLSTFD  279 (450)
T ss_dssp             EEEEEETTTCCEEEEEE
T ss_pred             eEEEEECCCCcEeeeec
Confidence            99999999987665443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.8e-24  Score=168.12  Aligned_cols=161  Identities=16%  Similarity=0.322  Sum_probs=133.7

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEee--CCCcEEEE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGA--LDGIINIF   80 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~--~d~~v~i~   80 (181)
                      +..+..+...+.+++|+|++++|++++.|++|++||+++++....+..+...+.+++|+|++. .+++++  .|+.+++|
T Consensus       210 ~~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~  289 (401)
T 4aez_A          210 IGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFW  289 (401)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEE
T ss_pred             eeEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEE
Confidence            445566777899999999999999999999999999999998888877777788999999875 455554  79999999


Q ss_pred             eCCCC-------CcccEEEEEEcCCCCEEEEE--eCCCcEEEEecCCCceeee--e-ecCCcEEEEEEccCCCEEEEEcC
Q psy10953         81 DANTG-------HSSWVLSTAFTRDGKFFISA--SADHTVRVWNFARRENMHT--F-KHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        81 d~~~~-------~~~~v~~~~~s~~~~~l~~~--~~d~~i~v~d~~~~~~~~~--~-~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      |+.++       +...+.+++|+|++++++++  +.|+.|++||+.++.....  + .|...|.+++|+|+|+++++++.
T Consensus       290 d~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~g~~dg~i~v~~~~~~~~~~~~~~~~h~~~v~~~~~s~dg~~l~s~~~  369 (401)
T 4aez_A          290 NAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLSIWSYSSSGLTKQVDIPAHDTRVLYSALSPDGRILSTAAS  369 (401)
T ss_dssp             ETTTCCEEEEEECSSCEEEEEECSSSSEEEEEECTTTCEEEEEEEETTEEEEEEEEECCSSCCCEEEECTTSSEEEEECT
T ss_pred             ECCCCCEEEEEeCCCcEEEEEECCCCCeEEEEeecCCCcEEEEecCCccceeEEEecCCCCCEEEEEECCCCCEEEEEeC
Confidence            99765       34578999999999999985  4899999999988654443  3 37788999999999999999999


Q ss_pred             CCcEEEEeCCCCeeEE
Q psy10953        149 DKAVHMYSYKPEEEVE  164 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~  164 (181)
                      |+.|++|++.+++.+.
T Consensus       370 dg~i~iw~~~~~~~~~  385 (401)
T 4aez_A          370 DENLKFWRVYDGDHVK  385 (401)
T ss_dssp             TSEEEEEECCC-----
T ss_pred             CCcEEEEECCCCcccc
Confidence            9999999998877654

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.3e-24  Score=174.27  Aligned_cols=148  Identities=14%  Similarity=0.153  Sum_probs=123.1

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-----eEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----FTLSIAYSTDGHWIASGALDGIINIFDANTG   85 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-----~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~   85 (181)
                      ...+.+++|||||++||+++.||+|++||.++  ++..+. +..     .+.+++|||||++|++|+.||.|++||+..+
T Consensus        85 ~~~V~~vawSPdG~~LAs~s~dg~V~iwd~~~--~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~  161 (588)
T 2j04_A           85 VCYPRVCKPSPIDDWMAVLSNNGNVSVFKDNK--MLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKN  161 (588)
T ss_dssp             SCCEEEEEECSSSSCEEEEETTSCEEEEETTE--EEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCC
T ss_pred             CCcEEEEEECCCCCEEEEEeCCCcEEEEeCCc--eeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCC
Confidence            56699999999999999999999999999644  555555 443     3779999999999999999999999997643


Q ss_pred             -------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce---eeee--ecCCcEEEEEEccCCC
Q psy10953         86 -------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN---MHTF--KHADQVWCVCVAPDGD  141 (181)
Q Consensus        86 -------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~---~~~~--~~~~~v~~~~~sp~g~  141 (181)
                                         |..+|.+++|+|+|  +++++.|+.+++||+..+..   ..++  .|...|++++|+  |+
T Consensus       162 ~l~~~~~i~l~ti~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~~~~~~~tL~~~h~~~V~svaFs--g~  237 (588)
T 2j04_A          162 SENTPEFYFESSIRLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASSHQPVSRMIQNASRRKITDLKIV--DY  237 (588)
T ss_dssp             TTTCCCCEEEEEEECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSSSCCCEEEEECCCSSCCCCEEEE--TT
T ss_pred             ccccccceeeeeeecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCccccceeeecccccCcEEEEEEE--CC
Confidence                               34589999999999  78889999999999987763   2344  366789999999  68


Q ss_pred             EEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        142 KFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      .+++++ ++.|++|++..++.....
T Consensus       238 ~LASa~-~~tIkLWd~~~~~~~~~~  261 (588)
T 2j04_A          238 KVVLTC-PGYVHKIDLKNYSISSLK  261 (588)
T ss_dssp             EEEEEC-SSEEEEEETTTTEEEEEE
T ss_pred             EEEEEe-CCeEEEEECCCCeEEEEE
Confidence            898887 699999999887774444

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=9.8e-26  Score=191.48  Aligned_cols=153  Identities=14%  Similarity=0.158  Sum_probs=126.3

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEEe---------cCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE--QIFD---------TRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~--~~~~---------~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      +...+..++|+|+|++|++|+.|++|++||+.++.+.  ..+.         .|...+.+++|+|||++||+|+.|++|+
T Consensus       434 ~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~svafspdg~~LAsgs~DgtV~  513 (902)
T 2oaj_A          434 GVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVDKISFAAETLELAVSIETGDVV  513 (902)
T ss_dssp             SBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEEEEEEETTTTEEEEEETTSCEE
T ss_pred             CcCCCCcccccccCcEEEEecCCCcEEEEECCCccccCCceEEeechhhcCCCCCCceeEEEecCCCCeEEEEecCcEEE
Confidence            3444566788999999999999999999999887532  1111         4556788999999999999999999999


Q ss_pred             EEeCCC-----------------------------------------------------CCcccEEEEEEcCCCCEEEEE
Q psy10953         79 IFDANT-----------------------------------------------------GHSSWVLSTAFTRDGKFFISA  105 (181)
Q Consensus        79 i~d~~~-----------------------------------------------------~~~~~v~~~~~s~~~~~l~~~  105 (181)
                      +||+.+                                                     +|...|.+++|+|+| +|+++
T Consensus       514 lwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~h~~~V~svafSpdG-~lAsg  592 (902)
T 2oaj_A          514 LFKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTAVHANKGKTSAINNSNIG-FVGIA  592 (902)
T ss_dssp             EEEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEEECCCSCSEEEEEECBTS-EEEEE
T ss_pred             EEEecCccccCccccCCCcccceeeeeccccCCccccccccccCCCCCCCccceeEEEEcCCCcEEEEEecCCc-EEEEE
Confidence            999743                                                     367789999999999 99999


Q ss_pred             eCCCcEEEEecCCCceee-----ee--ecCCcEEEEEEc-----cCC---CEEEEEcCCCcEEEEeC---CCCeeE
Q psy10953        106 SADHTVRVWNFARRENMH-----TF--KHADQVWCVCVA-----PDG---DKFVSVGEDKAVHMYSY---KPEEEV  163 (181)
Q Consensus       106 ~~d~~i~v~d~~~~~~~~-----~~--~~~~~v~~~~~s-----p~g---~~l~~~~~d~~v~i~~~---~~~~~~  163 (181)
                      +.|++|++||++++..+.     .+  .|...|++++|+     |||   ++|++++.|+.|++|++   .+|+..
T Consensus       593 s~D~tv~lwd~~~~~~~~~~~~~~~~~gh~~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p~~~g~~~  668 (902)
T 2oaj_A          593 YAAGSLMLIDRRGPAIIYMENIREISGAQSACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILPASGGKFD  668 (902)
T ss_dssp             ETTSEEEEEETTTTEEEEEEEGGGTCSSCCCCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEECGGGCEE
T ss_pred             eCCCcEEEEECCCCeEEEEeehhHhccccccceEEEEEEEEecCCCCCcceEEEEEecCCcEEEEEEecCCCCcEE
Confidence            999999999998876543     12  466789999999     886   89999999999999998   555433

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.93  E-value=1.2e-24  Score=168.64  Aligned_cols=154  Identities=16%  Similarity=0.264  Sum_probs=136.8

Q ss_pred             ccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEEecC------CceEEEEEECCCC-CEEEEeeCCC---c
Q psy10953          8 NVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTR------GKFTLSIAYSTDG-HWIASGALDG---I   76 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~s~d~-~~l~~~~~d~---~   76 (181)
                      ..+...+.+++|+|+ +.++++++.|++|++||+++++....+..+      ...+.+++|+|++ .++++++.|+   .
T Consensus       162 ~~~~~~v~~~~~~~~~~~~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~  241 (416)
T 2pm9_A          162 MSSVDEVISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPS  241 (416)
T ss_dssp             CCSSCCCCEEEECSSCTTEEEEESSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCC
T ss_pred             cCCCCCeeEEEeCCCCCcEEEEEcCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCce
Confidence            446667899999999 789999999999999999999988877765      5668899999997 6899999998   9


Q ss_pred             EEEEeCCC----------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCC-CEE
Q psy10953         77 INIFDANT----------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG-DKF  143 (181)
Q Consensus        77 v~i~d~~~----------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g-~~l  143 (181)
                      +++||++.          +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+. |...|++++|+|++ +++
T Consensus       242 i~~~d~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~~~~~v~~~~~s~~~~~~l  321 (416)
T 2pm9_A          242 ILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPARGNWCFKTKFAPEAPDLF  321 (416)
T ss_dssp             CCEEETTSTTSCSBCCCSCCSSCEEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEECSSSCCCCEEECTTCTTEE
T ss_pred             EEEEeCCCCCCCcEEeecCccCceeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecCCCCceEEEEECCCCCCEE
Confidence            99999864          4667899999999 89999999999999999999998888776 77889999999999 899


Q ss_pred             EEEcCCCcEEEEeCCCCe
Q psy10953        144 VSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~  161 (181)
                      ++++.|+.|++|++....
T Consensus       322 ~s~~~d~~i~iw~~~~~~  339 (416)
T 2pm9_A          322 ACASFDNKIEVQTLQNLT  339 (416)
T ss_dssp             EECCSSSEEEEEESCCCC
T ss_pred             EEEecCCcEEEEEccCCC
Confidence            999999999999997654

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.93  E-value=9.9e-24  Score=166.24  Aligned_cols=164  Identities=15%  Similarity=0.344  Sum_probs=141.6

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEEC--CCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYS--TDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s--~d~~~l~~~~~d~~v~i~   80 (181)
                      .+..+..+...+++++|+|++ ++++|+.|++|++||+++++....+..+...+.+++|+  ++++++++++.|+.+++|
T Consensus       154 ~~~~~~~h~~~V~~l~~~~~~-~l~s~s~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~~l~s~s~d~~i~vw  232 (464)
T 3v7d_B          154 FLLQLSGHDGGVWALKYAHGG-ILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVW  232 (464)
T ss_dssp             EEEEECCCSSCEEEEEECSTT-EEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEEESSSCEEEEEEETTSCEEEE
T ss_pred             EEEEEeCCCcCEEEEEEcCCC-EEEEEeCCCCEEEEECCCCcEEEEECCCCCccEEEEEecCCCCCEEEEEcCCCcEEEe
Confidence            355666788889999999988 89999999999999999999988888787778888887  688999999999999999


Q ss_pred             eCCCCC-------------------------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cC
Q psy10953         81 DANTGH-------------------------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HA  128 (181)
Q Consensus        81 d~~~~~-------------------------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~  128 (181)
                      |+.+..                               ...+.+  ++++++++++++.|+.|++||+.+++.+..+. |.
T Consensus       233 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~  310 (464)
T 3v7d_B          233 KLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHT  310 (464)
T ss_dssp             ECCCCCCC------CCSSEEESCGGGCTTEEEEECCCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCS
T ss_pred             eCCCCcccccccccCCcceEeeccCCCeEEEEEccCccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCC
Confidence            986432                               223433  47889999999999999999999998887776 78


Q ss_pred             CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       129 ~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      ..|.+++|+|+++++++++.|+.|++|++.+++.+....+.
T Consensus       311 ~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h  351 (464)
T 3v7d_B          311 DRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGH  351 (464)
T ss_dssp             SCEEEEEEETTTTEEEEEETTSCEEEEETTTTEEEEEECCC
T ss_pred             CCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCcEEEEEeCC
Confidence            88999999999999999999999999999998887666543

>3dw8_B Serine/threonine-protein phosphatase 2A 55 kDa RE subunit B alpha isoform; holoenzyme, PR55, WD repeat, hydrolase, iron, manganese binding, methylation, phosphoprotein, protein phosphatase; HET: 1ZN; 2.85A {Homo sapiens}

Probab=99.93  E-value=1.1e-24  Score=170.41  Aligned_cols=158  Identities=13%  Similarity=0.302  Sum_probs=129.9

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEE-------EecCCceEEEEEECCCC-CEEEEeeCCCcEE
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQI-------FDTRGKFTLSIAYSTDG-HWIASGALDGIIN   78 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~-------~~~~~~~~~~~~~s~d~-~~l~~~~~d~~v~   78 (181)
                      ..+...+.+++|+|++++|++| .|++|++||++ .++....       +..+...+.+++|+|++ ++|++++.|+.|+
T Consensus       174 ~~h~~~v~~~~~~~~~~~l~s~-~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~s~~~dg~i~  252 (447)
T 3dw8_B          174 NAHTYHINSISINSDYETYLSA-DDLRINLWHLEITDRSFNIVDIKPANMEELTEVITAAEFHPNSCNTFVYSSSKGTIR  252 (447)
T ss_dssp             SCCSSCCCEEEECTTSSEEEEE-CSSEEEEEETTEEEEEEEEEECCCSSGGGCCCCEEEEEECSSCTTEEEEEETTSCEE
T ss_pred             cCCCcceEEEEEcCCCCEEEEe-CCCeEEEEECCCCCceeeeeecccccccccCcceEEEEECCCCCcEEEEEeCCCeEE
Confidence            4567778999999999999998 79999999998 4444443       33456678899999998 9999999999999


Q ss_pred             EEeCCCCC------------cc------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCC-CceeeeeecCCc---
Q psy10953         79 IFDANTGH------------SS------------WVLSTAFTRDGKFFISASADHTVRVWNFAR-RENMHTFKHADQ---  130 (181)
Q Consensus        79 i~d~~~~~------------~~------------~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-~~~~~~~~~~~~---  130 (181)
                      +||++++.            ..            .|.+++|+|+|++|++++. +.|++||++. ++.+..+.....   
T Consensus       253 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~~~~-~~v~iwd~~~~~~~~~~~~~~~~~~~  331 (447)
T 3dw8_B          253 LCDMRASALCDRHSKLFEEPEDPSNRSFFSEIISSISDVKFSHSGRYMMTRDY-LSVKVWDLNMENRPVETYQVHEYLRS  331 (447)
T ss_dssp             EEETTTCSSSCTTCEEECCC-----CCHHHHHTTCEEEEEECTTSSEEEEEES-SEEEEEETTCCSSCSCCEESCGGGTT
T ss_pred             EEECcCCccccceeeEeccCCCccccccccccCceEEEEEECCCCCEEEEeeC-CeEEEEeCCCCccccceeeccccccc
Confidence            99987533            22            7999999999999999998 9999999987 666666653222   


Q ss_pred             -------------EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        131 -------------VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       131 -------------v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                                   +..++|+|++++|++++.|+.|++|++.+++.+.+..
T Consensus       332 ~l~~~~~~~~i~~~~~~~~s~~~~~l~s~s~dg~v~iwd~~~~~~~~~~~  381 (447)
T 3dw8_B          332 KLCSLYENDCIFDKFECCWNGSDSVVMTGSYNNFFRMFDRNTKRDITLEA  381 (447)
T ss_dssp             THHHHHHTSGGGCCCCEEECTTSSEEEEECSTTEEEEEETTTCCEEEEEC
T ss_pred             cccccccccccccceEEEECCCCCEEEEeccCCEEEEEEcCCCcceeeee
Confidence                         2348999999999999999999999999887765443

>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}

Probab=99.93  E-value=1.2e-23  Score=163.54  Aligned_cols=156  Identities=23%  Similarity=0.339  Sum_probs=136.3

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      +...+.+++|+|++++|++|+.|+.|++||+.+++....+..+...+.+++|  ++..|++++.|+.+++||++.     
T Consensus       133 ~~~~v~~v~~s~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  210 (401)
T 4aez_A          133 ESTYVASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLSW--NRHVLSSGSRSGAIHHHDVRIANHQI  210 (401)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTSSSCEE
T ss_pred             CCCCEEEEEECCCCCEEEEECCCCeEEEEECcCCeEEEEecCCCCceEEEEE--CCCEEEEEcCCCCEEEEecccCccee
Confidence            4566899999999999999999999999999999998888888888888988  568999999999999999973     


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCE-EEEEc--CCCcEEEEe
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK-FVSVG--EDKAVHMYS  156 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~-l~~~~--~d~~v~i~~  156 (181)
                          +|...|.+++|+|+++++++++.|+.|++||++++..+..+. |...|.+++|+|++.. +++++  .|+.|++|+
T Consensus       211 ~~~~~~~~~v~~~~~~~~~~~l~s~~~d~~v~iwd~~~~~~~~~~~~~~~~v~~~~~~p~~~~ll~~~~gs~d~~i~i~d  290 (401)
T 4aez_A          211 GTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN  290 (401)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCSSEEEEECCCSSCCCEEEECTTSTTEEEEECCTTTCEEEEEE
T ss_pred             eEEcCCCCCeeEEEEcCCCCEEEEEeCCCeEEEccCCCCCccEEecCCcceEEEEEECCCCCCEEEEecCCCCCEEEEEE
Confidence                467789999999999999999999999999999988777764 7788999999998755 55554  699999999


Q ss_pred             CCCCeeEEEcC
Q psy10953        157 YKPEEEVEVNG  167 (181)
Q Consensus       157 ~~~~~~~~~~~  167 (181)
                      +.++..+....
T Consensus       291 ~~~~~~~~~~~  301 (401)
T 4aez_A          291 AATGARVNTVD  301 (401)
T ss_dssp             TTTCCEEEEEE
T ss_pred             CCCCCEEEEEe
Confidence            98887765443

>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A

Probab=99.93  E-value=3.1e-24  Score=166.64  Aligned_cols=159  Identities=18%  Similarity=0.318  Sum_probs=135.9

Q ss_pred             ceeeeccCeeeEEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEE--ecCCceEEEEEECCCCCEEEEeeCCCcEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDD-KYVLSGSQSGKINLYGVETGKLEQIF--DTRGKFTLSIAYSTDGHWIASGALDGIINI   79 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~--~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i   79 (181)
                      .+..+..+...+.+++|+|++ ++|++++.|++|++||+++++....+  ..+...+.+++|+|++++|++++.|+.+++
T Consensus       123 ~~~~~~~h~~~v~~~~~~p~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~i  202 (402)
T 2aq5_A          123 PVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDKRVRV  202 (402)
T ss_dssp             CSEEEECCSSCEEEEEECSSBTTEEEEEETTSCEEEEETTTTEEEEEECTTTCCSCEEEEEECTTSSCEEEEETTSEEEE
T ss_pred             ceEEecCCCCeEEEEEECcCCCCEEEEEcCCCEEEEEECCCCCccEEEecCCCCCceEEEEECCCCCEEEEEecCCcEEE
Confidence            456677788889999999998 69999999999999999999988888  567777889999999999999999999999


Q ss_pred             EeCCCC---------Cccc-EEEEEEcCCCCEEEEE---eCCCcEEEEecCCCce-e--eeeecCCcEEEEEEccCCCEE
Q psy10953         80 FDANTG---------HSSW-VLSTAFTRDGKFFISA---SADHTVRVWNFARREN-M--HTFKHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        80 ~d~~~~---------~~~~-v~~~~~s~~~~~l~~~---~~d~~i~v~d~~~~~~-~--~~~~~~~~v~~~~~sp~g~~l  143 (181)
                      ||++++         |... +..+.|+|++++++++   +.|+.|++||+++... +  ....+...+.+++|+|+++++
T Consensus       203 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~d~~i~iwd~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l  282 (402)
T 2aq5_A          203 IEPRKGTVVAEKDRPHEGTRPVHAVFVSEGKILTTGFSRMSERQVALWDTKHLEEPLSLQELDTSSGVLLPFFDPDTNIV  282 (402)
T ss_dssp             EETTTTEEEEEEECSSCSSSCCEEEECSTTEEEEEEECTTCCEEEEEEETTBCSSCSEEEECCCCSSCEEEEEETTTTEE
T ss_pred             EeCCCCceeeeeccCCCCCcceEEEEcCCCcEEEEeccCCCCceEEEEcCccccCCceEEeccCCCceeEEEEcCCCCEE
Confidence            998743         3333 7889999999999999   7899999999987654 2  233466789999999999998


Q ss_pred             EE-EcCCCcEEEEeCCCCe
Q psy10953        144 VS-VGEDKAVHMYSYKPEE  161 (181)
Q Consensus       144 ~~-~~~d~~v~i~~~~~~~  161 (181)
                      ++ ++.|+.|++|++..++
T Consensus       283 ~~~g~~dg~i~i~d~~~~~  301 (402)
T 2aq5_A          283 YLCGKGDSSIRYFEITSEA  301 (402)
T ss_dssp             EEEETTCSCEEEEEECSST
T ss_pred             EEEEcCCCeEEEEEecCCC
Confidence            65 5579999999998876

>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}

Probab=99.93  E-value=2.5e-23  Score=160.97  Aligned_cols=157  Identities=21%  Similarity=0.384  Sum_probs=137.3

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      +...+.+++|+|++++|++++.|+.|++|| .+++....+..+...+.+++|+|++++|++++.|+.+++||+.+     
T Consensus       107 ~~~~v~~~~~s~~~~~l~~~~~dg~i~i~~-~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~  185 (425)
T 1r5m_A          107 TTNQVTCLAWSHDGNSIVTGVENGELRLWN-KTGALLNVLNFHRAPIVSVKWNKDGTHIISMDVENVTILWNVISGTVMQ  185 (425)
T ss_dssp             -CBCEEEEEECTTSSEEEEEETTSCEEEEE-TTSCEEEEECCCCSCEEEEEECTTSSEEEEEETTCCEEEEETTTTEEEE
T ss_pred             CCCceEEEEEcCCCCEEEEEeCCCeEEEEe-CCCCeeeeccCCCccEEEEEECCCCCEEEEEecCCeEEEEECCCCcEEE
Confidence            345789999999999999999999999999 66777777777778888999999999999999999999999742     


Q ss_pred             -----------------------------------------------------------CCcccEEEEEEcCCCCEEEEE
Q psy10953         85 -----------------------------------------------------------GHSSWVLSTAFTRDGKFFISA  105 (181)
Q Consensus        85 -----------------------------------------------------------~~~~~v~~~~~s~~~~~l~~~  105 (181)
                                                                                 .|...|.+++|+|++++|+++
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~i~~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~  265 (425)
T 1r5m_A          186 HFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPKGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNKLLLSA  265 (425)
T ss_dssp             EECCC---------------CCCBSCCEEEETTEEEEECGGGCEEEEETTCSSCSEEECCCSSCEEEEEEETTTTEEEEE
T ss_pred             EeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCCCeEEEEEcCCCceeeeeccCCCceEEEEECCCCCEEEEE
Confidence                                                                       134567889999999999999


Q ss_pred             eCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        106 SADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       106 ~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +.|+.|++||+.+++.+..+. |...+.+++|+|++ .+++++.|+.|++|++..+..+.....
T Consensus       266 ~~d~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~  328 (425)
T 1r5m_A          266 SDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDD-KVISCSMDGSVRLWSLKQNTLLALSIV  328 (425)
T ss_dssp             ETTSCEEEECSSSBSCSEEECCCSSCEEEEEEETTT-EEEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             cCCCEEEEEECCCCccceEecCCCccEEEEEECCCC-EEEEEeCCCcEEEEECCCCcEeEeccc
Confidence            999999999999988777775 77889999999999 999999999999999988877654443

>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.7e-24  Score=180.68  Aligned_cols=152  Identities=12%  Similarity=0.166  Sum_probs=133.1

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      +...+.+++|+| |++|++++.|++|++||+++++.+..+..+ ..+.+++|+|++++|++|+.||.|++||+.++    
T Consensus        57 ~~~~V~~l~fsp-g~~L~S~s~D~~v~lWd~~~~~~~~~~~~~-~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~~~~  134 (902)
T 2oaj_A           57 DRSAIKEMRFVK-GIYLVVINAKDTVYVLSLYSQKVLTTVFVP-GKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQLSS  134 (902)
T ss_dssp             SCCCEEEEEEET-TTEEEEEETTCEEEEEETTTCSEEEEEECS-SCEEEEECCTTCSEEEEEETTSCEEEEETTTTEEEE
T ss_pred             CCCCEEEEEEcC-CCEEEEEECcCeEEEEECCCCcEEEEEcCC-CCEEEEEECCCCCEEEEEcCCCcEEEEECCCCcccc
Confidence            455689999999 889999999999999999999988777644 45789999999999999999999999998642    


Q ss_pred             ---------------CcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeec-------------------CCc
Q psy10953         86 ---------------HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFKH-------------------ADQ  130 (181)
Q Consensus        86 ---------------~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------------~~~  130 (181)
                                     |...|.+++|+|+ +..+++++.|+.| +||+++++.+..+..                   ...
T Consensus       135 ~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~  213 (902)
T 2oaj_A          135 FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSEKTNEKRTPK  213 (902)
T ss_dssp             EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCCCTTSCBCCC
T ss_pred             ceeccccccccccccCCCCeEEEEEccCCCCEEEEEeCCCcE-EEECCCCceEEEEecccCCcCCCcccccccccccCCC
Confidence                           4567899999996 4789999999999 999999887766642                   367


Q ss_pred             EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        131 VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       131 v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      |++++|+|+|++|++++.|+.|++||+.+++.+.
T Consensus       214 V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~  247 (902)
T 2oaj_A          214 VIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIM  247 (902)
T ss_dssp             EEEEEECTTSSEEEEEETTCCEEEEETTTCCEEE
T ss_pred             eEEEEEcCCCCEEEEEECCCeEEEEECCCCcEEE
Confidence            9999999999999999999999999999887765

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.93  E-value=1.2e-24  Score=164.59  Aligned_cols=155  Identities=14%  Similarity=0.124  Sum_probs=136.4

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc----EEEEEecCCceEEEEEECCCCC-EEEEeeCCC
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGK----LEQIFDTRGKFTLSIAYSTDGH-WIASGALDG   75 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~   75 (181)
                      |+.+.....+...+++++|+|++++|++++.|++|++|++.+++    .... ..+...+.+++|+|+++ +|++++.|+
T Consensus         1 m~~~~~~~~h~~~v~~~~~s~~~~~l~~~~~d~~v~iw~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~l~~~~~dg   79 (342)
T 1yfq_A            1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQS-LRYKHPLLCCNFIDNTDLQIYVGTVQG   79 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEE-EECSSCEEEEEEEESSSEEEEEEETTS
T ss_pred             CcceecccCCCCcEEEEEEcCCCCEEEEEcCCCeEEEEEeCCCCccccceee-eecCCceEEEEECCCCCcEEEEEcCCC
Confidence            55666667788889999999999999999999999999998877    4333 35666788999999999 999999999


Q ss_pred             cEEEEeC-CC-------C--CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC---------CceeeeeecCCcEEEEEE
Q psy10953         76 IINIFDA-NT-------G--HSSWVLSTAFTRDGKFFISASADHTVRVWNFAR---------RENMHTFKHADQVWCVCV  136 (181)
Q Consensus        76 ~v~i~d~-~~-------~--~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~---------~~~~~~~~~~~~v~~~~~  136 (181)
                      .|++||+ ..       +  |...|.+++|+| ++++++++.|+.|++||+++         .+.+..+.+...+.+++|
T Consensus        80 ~i~~wd~~~~~~~~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~  158 (342)
T 1yfq_A           80 EILKVDLIGSPSFQALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDT  158 (342)
T ss_dssp             CEEEECSSSSSSEEECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEE
T ss_pred             eEEEEEeccCCceEeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEeeCCceEEEEe
Confidence            9999999 53       4  778899999999 99999999999999999987         666667778889999999


Q ss_pred             ccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        137 APDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       137 sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +|++  +++++.++.|++|++..
T Consensus       159 ~~~~--l~~~~~d~~i~i~d~~~  179 (342)
T 1yfq_A          159 NSSR--LIVGMNNSQVQWFRLPL  179 (342)
T ss_dssp             CSSE--EEEEESTTEEEEEESSC
T ss_pred             cCCc--EEEEeCCCeEEEEECCc
Confidence            9988  88899999999999987

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=99.93  E-value=4.4e-24  Score=178.30  Aligned_cols=165  Identities=22%  Similarity=0.391  Sum_probs=146.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+..+...+.+++|+|++++|++++.|++|++||+.+++....+..+...+.+++|+|++++|++++.|+.+++||+
T Consensus        47 ~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~~~~dg~i~vw~~  126 (814)
T 3mkq_A           47 EVRSIQVTETPVRAGKFIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNW  126 (814)
T ss_dssp             EEEEEECCSSCEEEEEEEGGGTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSEEEEEETTSEEEEEEG
T ss_pred             eEEEEecCCCcEEEEEEeCCCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEEEEEEeCCCCEEEEEcCCCEEEEEEC
Confidence            45666778888999999999999999999999999999999999888888888889999999999999999999999998


Q ss_pred             CC---------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEcc--CCCEEEEEcC
Q psy10953         83 NT---------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAP--DGDKFVSVGE  148 (181)
Q Consensus        83 ~~---------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp--~g~~l~~~~~  148 (181)
                      .+         +|...|.+++|+| +++.+++++.|+.|++||+..+.....+.  +...+.+++|+|  +++++++++.
T Consensus       127 ~~~~~~~~~~~~~~~~v~~~~~~p~~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~~~~~  206 (814)
T 3mkq_A          127 ENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD  206 (814)
T ss_dssp             GGTSEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCSSCSEEEECCCTTCCCEEEECCSTTCCEEEEECT
T ss_pred             CCCceEEEEEcCCCCcEEEEEEEcCCCCEEEEEeCCCeEEEEECCCCcceeEEecCCCCCEEEEEEEECCCCCEEEEEeC
Confidence            64         3667899999999 88999999999999999998877666554  347899999999  9999999999


Q ss_pred             CCcEEEEeCCCCeeEEEcC
Q psy10953        149 DKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       149 d~~v~i~~~~~~~~~~~~~  167 (181)
                      |+.|++|++.++..+....
T Consensus       207 dg~i~~~d~~~~~~~~~~~  225 (814)
T 3mkq_A          207 DLTIKIWDYQTKSCVATLE  225 (814)
T ss_dssp             TSEEEEEETTTTEEEEEEE
T ss_pred             CCEEEEEECCCCcEEEEEc
Confidence            9999999998887665444

>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X

Probab=99.93  E-value=4.2e-24  Score=164.74  Aligned_cols=163  Identities=17%  Similarity=0.301  Sum_probs=137.4

Q ss_pred             eeeeccC-----eeeEEEEEEc----CCCCE-EEEEeCCCcEEEEeCCC------CcEEE-----EEe-------cCCce
Q psy10953          4 ISKINVG-----PVDMWNVVFS----PDDKY-VLSGSQSGKINLYGVET------GKLEQ-----IFD-------TRGKF   55 (181)
Q Consensus         4 ~~~~~~~-----~~~~~~~~~s----~~g~~-l~~~~~d~~i~~~d~~~------~~~~~-----~~~-------~~~~~   55 (181)
                      +..+..+     ...+.+++|+    |++++ |++++.|+.|++||+++      ++...     .+.       .+...
T Consensus       109 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  188 (397)
T 1sq9_A          109 FEKLDLLDSDMKKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQF  188 (397)
T ss_dssp             EEEECCSCTTGGGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCC
T ss_pred             ceeecccccccCCCcEEEEEEeeccCCCCceEEEEEeCCCcEEEEeCCccccccccceeeccCcceeeeeeccccCCCCC
Confidence            4555555     4779999999    99999 99999999999999988      65544     553       25566


Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCC--------C---C---cccEEEEEEcCCCCEEEEEeCC---CcEEEEecCC
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANT--------G---H---SSWVLSTAFTRDGKFFISASAD---HTVRVWNFAR  118 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~---~---~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~  118 (181)
                      +.+++|+|++ .|++++.|+.+++||+++        .   |   ...+.+++|+|++++|++++.|   +.|++||+++
T Consensus       189 i~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~~~g~i~i~d~~~  267 (397)
T 1sq9_A          189 ATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEF  267 (397)
T ss_dssp             CCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTT
T ss_pred             ceEEEECCCc-eEEEEeCCCcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCCCCceEEEEECCC
Confidence            7799999999 999999999999999874        3   6   7789999999999999999999   9999999999


Q ss_pred             Cceeeeee--------------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        119 RENMHTFK--------------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       119 ~~~~~~~~--------------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      ++.+..+.              |...|.+++|+|++++|++++.|+.|++|++.+++.+....
T Consensus       268 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~  330 (397)
T 1sq9_A          268 GERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLN  330 (397)
T ss_dssp             CCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEE
T ss_pred             CcccceeccCcccccccccccccCCcEEEEEECCCCCEEEEEeCCCeEEEEEcCCCceeEEEe
Confidence            88777764              67889999999999999999999999999999988776554

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.93  E-value=1e-23  Score=170.61  Aligned_cols=165  Identities=19%  Similarity=0.298  Sum_probs=144.9

Q ss_pred             cceeeeccCeee-EEEEEEcC--CCCEEEEEeCCCcEEEEeCCCC--------cEEEEEecCCceEEEEEECCCCCEEEE
Q psy10953          2 KQISKINVGPVD-MWNVVFSP--DDKYVLSGSQSGKINLYGVETG--------KLEQIFDTRGKFTLSIAYSTDGHWIAS   70 (181)
Q Consensus         2 ~~~~~~~~~~~~-~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~--------~~~~~~~~~~~~~~~~~~s~d~~~l~~   70 (181)
                      +.+..+..+... +.+++|+|  ++++|++++.|++|++||+.++        +....+..+...+.+++|+|++++|++
T Consensus        54 ~~~~~~~~h~~~~v~~~~~sp~~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~  133 (615)
T 1pgu_A           54 PPVVQFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCV  133 (615)
T ss_dssp             CSEEEECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEE
T ss_pred             ccceEEecCCCceEEEEEECcCCCCCEEEEecCCCEEEEEeCCCCcccccccccccchhhcccccEEEEEEeCCCCEEEE
Confidence            356677778888 99999999  9999999999999999999755        555666667777889999999999999


Q ss_pred             eeCC----CcEEEEeCC------CCCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee-cCC---cEEEEE
Q psy10953         71 GALD----GIINIFDAN------TGHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK-HAD---QVWCVC  135 (181)
Q Consensus        71 ~~~d----~~v~i~d~~------~~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~---~v~~~~  135 (181)
                      ++.+    +.+.+||..      .+|...|.+++|+|+++ .+++++.|+.|++||+.+++.+..+. |..   .|.+++
T Consensus       134 ~~~~~~~~~~v~~~d~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~  213 (615)
T 1pgu_A          134 VGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVE  213 (615)
T ss_dssp             EECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEE
T ss_pred             eccCCCCccEEEEEECCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEEEeCCCcceeeeecccCCCCceEEEEE
Confidence            9887    689999854      35778899999999998 89999999999999999988887776 667   899999


Q ss_pred             EccC-CCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        136 VAPD-GDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       136 ~sp~-g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      |+|+ ++++++++.|+.|++|++.+++.+...
T Consensus       214 ~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~  245 (615)
T 1pgu_A          214 FSPDSGEFVITVGSDRKISCFDGKSGEFLKYI  245 (615)
T ss_dssp             ECSTTCCEEEEEETTCCEEEEETTTCCEEEEC
T ss_pred             ECCCCCCEEEEEeCCCeEEEEECCCCCEeEEe
Confidence            9999 999999999999999999988877765

>2j04_A TAU60, YPL007P, hypothetical protein YPL007C; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.93  E-value=5.4e-25  Score=176.42  Aligned_cols=143  Identities=12%  Similarity=0.142  Sum_probs=116.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc-----------------------------EEEEEe-cCCceEEEEEECC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGK-----------------------------LEQIFD-TRGKFTLSIAYST   63 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~-----------------------------~~~~~~-~~~~~~~~~~~s~   63 (181)
                      +.+++|||||+++|+++.|++|+  |...++                             ....+. .+...+.+++|||
T Consensus        18 v~sv~~SpDG~~iASas~D~TV~--d~~~~~~l~gh~~~v~~V~FsPdg~~~~~~~~~~~~~~~~~~~~~~~V~~vawSP   95 (588)
T 2j04_A           18 KNNLTWARDGTLYLTTFPDISIG--QPKYAKDINCNSKNLFHVKEFPLEFENKLDFELAQQNGLLNSQPVCYPRVCKPSP   95 (588)
T ss_dssp             SCCEEECTTSCEEEECSSSEEEE--EECCCSCCSSBGGGTEEEEEECCCCCCTTTTSCCCSSCSSTTSCSCCEEEEEECS
T ss_pred             EEEEEECCCCCEEEEEcCCceee--cccccceecCCCccEEEEEECCCCCcceEEEEeCCCceEeecCCCCcEEEEEECC
Confidence            78999999999999999999995  332222                             111111 2255688999999


Q ss_pred             CCCEEEEeeCCCcEEEEeCC------CCCcc-----cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-------eeee
Q psy10953         64 DGHWIASGALDGIINIFDAN------TGHSS-----WVLSTAFTRDGKFFISASADHTVRVWNFARREN-------MHTF  125 (181)
Q Consensus        64 d~~~l~~~~~d~~v~i~d~~------~~~~~-----~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-------~~~~  125 (181)
                      ||++|++++.||.|++||..      . |..     .+.+++|||+|++|++++.||.|++||+.++..       +.++
T Consensus        96 dG~~LAs~s~dg~V~iwd~~~~l~~l~-~~~~~~~~sv~svafSPDG~~LAsgs~DGtVkIWd~~~~~l~~~~~i~l~ti  174 (588)
T 2j04_A           96 IDDWMAVLSNNGNVSVFKDNKMLTNLD-SKGNLSSRTYHCFEWNPIESSIVVGNEDGELQFFSIRKNSENTPEFYFESSI  174 (588)
T ss_dssp             SSSCEEEEETTSCEEEEETTEEEEECC-CSSCSTTTCEEEEEECSSSSCEEEEETTSEEEEEECCCCTTTCCCCEEEEEE
T ss_pred             CCCEEEEEeCCCcEEEEeCCceeeecc-CCCccccccEEEEEEcCCCCEEEEEcCCCEEEEEECCCCccccccceeeeee
Confidence            99999999999999999942      2 443     599999999999999999999999999988752       3443


Q ss_pred             e-----cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        126 K-----HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       126 ~-----~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      .     |...|.+++|+|||  +++++.|+.|++|++..+.
T Consensus       175 ~~~~~gh~~~V~sVawSPdg--Laass~D~tVrlWd~~~~~  213 (588)
T 2j04_A          175 RLSDAGSKDWVTHIVWYEDV--LVAALSNNSVFSMTVSASS  213 (588)
T ss_dssp             ECSCTTCCCCEEEEEEETTE--EEEEETTCCEEEECCCSSS
T ss_pred             ecccccccccEEEEEEcCCc--EEEEeCCCeEEEEECCCCc
Confidence            2     55689999999999  8888899999999998766

>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A

Probab=99.93  E-value=8.2e-24  Score=160.88  Aligned_cols=153  Identities=23%  Similarity=0.387  Sum_probs=131.7

Q ss_pred             cCeeeEEEEEEcCC----CCEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEECCC----CCEEEEeeCCC
Q psy10953          9 VGPVDMWNVVFSPD----DKYVLSGSQSGKINLYGVETGKLEQIFDT-----RGKFTLSIAYSTD----GHWIASGALDG   75 (181)
Q Consensus         9 ~~~~~~~~~~~s~~----g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~s~d----~~~l~~~~~d~   75 (181)
                      .+...+++++|+|+    ...+++++.++.|++||+.+++....+..     +...+.+++|+|+    +++|++++.|+
T Consensus        16 ~h~~~v~~i~~~p~~~~~~~~~~~~~~~~~v~vw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~dg   95 (366)
T 3k26_A           16 DHNQPLFGVQFNWHSKEGDPLVFATVGSNRVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRG   95 (366)
T ss_dssp             TTCSCEEEEEECTTCCTTSCEEEEEEETTEEEEEEECGGGCEEEEEEEECSCTTCCEEEEEEEECTTTCCEEEEEEETTC
T ss_pred             CCCCceEEEEEecccCCCCceEEEECCCCEEEEEEcCCCcEEEeeeeccccCCCCcEEEEEeccCCCCCCCEEEEecCCC
Confidence            57778999999984    55666777778999999998877655543     3355789999999    67899999999


Q ss_pred             cEEEEeCCC--------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeee----ecCCcEEEEEEccCCCE
Q psy10953         76 IINIFDANT--------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTF----KHADQVWCVCVAPDGDK  142 (181)
Q Consensus        76 ~v~i~d~~~--------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~~~~~sp~g~~  142 (181)
                      .|++||+.+        +|...|.+++|+| ++++|++++.|+.|++||+.+++.+..+    .|...|.+++|+|++++
T Consensus        96 ~i~v~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~  175 (366)
T 3k26_A           96 IIRIINPITMQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQTDTLVAIFGGVEGHRDEVLSADYDLLGEK  175 (366)
T ss_dssp             EEEEECTTTCCEEEEEESCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTTTEEEEEECSTTSCSSCEEEEEECTTSSE
T ss_pred             EEEEEEchhceEeeeecCCCCcEEEEEECCCCCCEEEEEeCCCeEEEEEeecCeEEEEecccccccCceeEEEECCCCCE
Confidence            999999874        3677899999999 8999999999999999999998887776    47889999999999999


Q ss_pred             EEEEcCCCcEEEEeCCCCe
Q psy10953        143 FVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~~  161 (181)
                      |++++.|+.|++|++..++
T Consensus       176 l~~~~~dg~i~i~d~~~~~  194 (366)
T 3k26_A          176 IMSCGMDHSLKLWRINSKR  194 (366)
T ss_dssp             EEEEETTSCEEEEESCSHH
T ss_pred             EEEecCCCCEEEEECCCCc
Confidence            9999999999999998654

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.93  E-value=6.8e-24  Score=161.00  Aligned_cols=148  Identities=17%  Similarity=0.338  Sum_probs=125.2

Q ss_pred             eEEEEE----EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC---CCCEEEEeeCCCcEEEEeCCC-
Q psy10953         13 DMWNVV----FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST---DGHWIASGALDGIINIFDANT-   84 (181)
Q Consensus        13 ~~~~~~----~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~---d~~~l~~~~~d~~v~i~d~~~-   84 (181)
                      .+++++    |+|+++++++++.|+.|++||+++++...... +...+.+++|+|   ++.+|++++.|+.+++||++. 
T Consensus       166 ~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~i~d~~~~  244 (357)
T 3i2n_A          166 DCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETN-IKNGVCSLEFDRKDISMNKLVATSLEGKFHVFDMRTQ  244 (357)
T ss_dssp             CEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEESCSSSSCCEEEEEESTTEEEEEEEEEE
T ss_pred             ceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecC-CCCceEEEEcCCCCCCCCEEEEECCCCeEEEEeCcCC
Confidence            577777    78999999999999999999999998765543 455678999999   999999999999999999752 


Q ss_pred             ------------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCc-------------------eeeeee-cCCcE
Q psy10953         85 ------------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRE-------------------NMHTFK-HADQV  131 (181)
Q Consensus        85 ------------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~-------------------~~~~~~-~~~~v  131 (181)
                                  +|...|.+++|+|+++ ++++++.|+.|++||+....                   .+..+. |...|
T Consensus       245 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v  324 (357)
T 3i2n_A          245 HPTKGFASVSEKAHKSTVWQVRHLPQNRELFLTAGGAGGLHLWKYEYPIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPI  324 (357)
T ss_dssp             ETTTEEEEEEEECCSSCEEEEEEETTEEEEEEEEETTSEEEEEEEECCSCC--CCTTSCCCCCCCEEEEEEEEECCSSCE
T ss_pred             CcccceeeeccCCCcCCEEEEEECCCCCcEEEEEeCCCcEEEeecCCCcccccccCCCCccccccccceeeccccCCCCe
Confidence                        5778899999999998 89999999999999987532                   333343 77889


Q ss_pred             EEEEEccCCCEEE-EEcCCCcEEEEeCCCCe
Q psy10953        132 WCVCVAPDGDKFV-SVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       132 ~~~~~sp~g~~l~-~~~~d~~v~i~~~~~~~  161 (181)
                      ++++|+|++++++ +++.|+.|++|++....
T Consensus       325 ~~~~~s~~~~~l~~s~~~d~~i~iw~~~~~~  355 (357)
T 3i2n_A          325 SSLDWSPDKRGLCVCSSFDQTVRVLIVTKLN  355 (357)
T ss_dssp             EEEEECSSSTTEEEEEETTSEEEEEEECC--
T ss_pred             eEEEEcCCCCeEEEEecCCCcEEEEECCCcc
Confidence            9999999999998 79999999999997654

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=4.2e-23  Score=159.07  Aligned_cols=155  Identities=21%  Similarity=0.348  Sum_probs=129.3

Q ss_pred             CeeeEEEEEEcC---CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEEEeCCC-
Q psy10953         10 GPVDMWNVVFSP---DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINIFDANT-   84 (181)
Q Consensus        10 ~~~~~~~~~~s~---~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i~d~~~-   84 (181)
                      .+..+..+.++|   ++.++++++.|+.|++||+++++....+..+...+.+++|+|+++ .|++++.|+.+++||++. 
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~~~~~ll~~~~~dg~i~i~d~~~~  219 (408)
T 4a11_B          140 FEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRA  219 (408)
T ss_dssp             CSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECSSCTTEEEEEETTSCEEEEETTCS
T ss_pred             CCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECCCCCcEEEEEcCCCcEEEEECCCC
Confidence            344567888888   455999999999999999999998888887777888999999998 588999999999999853 


Q ss_pred             -----------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc---------------------
Q psy10953         85 -----------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE---------------------  120 (181)
Q Consensus        85 -----------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~---------------------  120 (181)
                                             .|...|.+++|+|+++++++++.|+.|++||+.+++                     
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (408)
T 4a11_B          220 SGCLITLDQHNGKKSQAVESANTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTV  299 (408)
T ss_dssp             SCCSEECCTTTTCSCCCTTTSSCSCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEE
T ss_pred             CcccccccccccccceeeccccccccCceeEEEEcCCCCEEEEecCCCeEEEEECCCCccceeccccccccccccceeEE
Confidence                                   356789999999999999999999999999987543                     


Q ss_pred             --------------------------eeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        121 --------------------------NMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       121 --------------------------~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                                                .+..+. |...|.+++|+|++++|++++.|+.|++|++.+++++.
T Consensus       300 ~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~s~~~dg~i~iw~~~~~~~~~  370 (408)
T 4a11_B          300 SCGCSSEFVFVPYGSTIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNILAWVPSLYEPVP  370 (408)
T ss_dssp             CCSSSSCEEEEEETTEEEEEETTTCCEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEEECC-----
T ss_pred             ecCCCceEEEEecCCEEEEEECcCCcceeeeccCCCeEEEEEEcCCCCEEEEECCCCeEEEEeCCCCCccC
Confidence                                      222333 66789999999999999999999999999999887665

>2j04_B YDR362CP, TAU91; beta propeller, type 2 promoters, transcription, hypothetica protein, preinitiation complex, yeast RNA polymerase III; 3.2A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.7e-24  Score=173.12  Aligned_cols=154  Identities=13%  Similarity=0.176  Sum_probs=126.3

Q ss_pred             ccCeeeEEEEEEcCC------CCEEEEEeCCCcEEEEeCCCCcEE-----------EEEecCCceEEEEEECCCCCEEEE
Q psy10953          8 NVGPVDMWNVVFSPD------DKYVLSGSQSGKINLYGVETGKLE-----------QIFDTRGKFTLSIAYSTDGHWIAS   70 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~------g~~l~~~~~d~~i~~~d~~~~~~~-----------~~~~~~~~~~~~~~~s~d~~~l~~   70 (181)
                      ..+...++.++|+|+      +++||+++.|++|++||+.+++..           ..+..+...+.+++|++++ .|++
T Consensus       204 ~~~~~~V~~v~wsp~~~~~~~~~~LAs~s~DgtvrlWd~~~~~~~~~~~~~~~~p~~~l~~h~~~v~sv~~s~~~-~las  282 (524)
T 2j04_B          204 VHSFGEVWDLKWHEGCHAPHLVGCLSFVSQEGTINFLEIIDNATDVHVFKMCEKPSLTLSLADSLITTFDFLSPT-TVVC  282 (524)
T ss_dssp             EECCCSEEEEEECSSCCCSSSSCEEEEEETTSCEEEEECCCCSSSSSEEECCCSCSEEECCTTTCEEEEEESSSS-EEEE
T ss_pred             EecCCcEEEEEECCCCCCCCCCceEEEEecCCeEEEEEcCCCccccccceeecCceEEEEcCCCCEEEEEecCCC-eEEE
Confidence            334456899999997      579999999999999999866421           2445566778899999864 7999


Q ss_pred             eeCCCcEEEEeCCC---------CCcccEEEE--EEcCCC-CEEEEEeCCCcEEEEecCCCceeeeee-cC--CcEEEEE
Q psy10953         71 GALDGIINIFDANT---------GHSSWVLST--AFTRDG-KFFISASADHTVRVWNFARRENMHTFK-HA--DQVWCVC  135 (181)
Q Consensus        71 ~~~d~~v~i~d~~~---------~~~~~v~~~--~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~--~~v~~~~  135 (181)
                      |+.||+|++||+++         +|...|.++  +|+|+| ++|++++.|++|++||+++++....+. |.  ..+++++
T Consensus       283 gs~DgtV~lWD~~~~~~~~~~~~~H~~~V~sv~~~~s~~g~~~laS~S~D~tvklWD~~~~~~~~~~~~~~~~~~v~~v~  362 (524)
T 2j04_B          283 GFKNGFVAEFDLTDPEVPSFYDQVHDSYILSVSTAYSDFEDTVVSTVAVDGYFYIFNPKDIATTKTTVSRFRGSNLVPVV  362 (524)
T ss_dssp             EETTSEEEEEETTBCSSCSEEEECSSSCEEEEEEECCTTSCCEEEEEETTSEEEEECGGGHHHHCEEEEECSCCSCCCEE
T ss_pred             EeCCCEEEEEECCCCCCceEEeecccccEEEEEEEcCCCCCeEEEEeccCCeEEEEECCCCCcccccccccccCcccceE
Confidence            99999999999863         366789988  678888 899999999999999999877655443 33  2478999


Q ss_pred             EccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        136 VAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       136 ~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      |+|+++.+++++.|+.|++|++..+..
T Consensus       363 fsp~~~~l~s~~~d~tv~lwd~~~~~~  389 (524)
T 2j04_B          363 YCPQIYSYIYSDGASSLRAVPSRAAFA  389 (524)
T ss_dssp             EETTTTEEEEECSSSEEEEEETTCTTC
T ss_pred             eCCCcCeEEEeCCCCcEEEEECccccc
Confidence            999999999999999999999987654

>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4e-24  Score=165.66  Aligned_cols=166  Identities=14%  Similarity=0.272  Sum_probs=139.0

Q ss_pred             ceeeeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCc------EEEE---EecCCceEEEEEECCC-CCEEEEe
Q psy10953          3 QISKINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGK------LEQI---FDTRGKFTLSIAYSTD-GHWIASG   71 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~------~~~~---~~~~~~~~~~~~~s~d-~~~l~~~   71 (181)
                      .+..+..+...+.+++|+|+ +++|++++.|++|++||+.+++      ....   +..+...+.+++|+|+ +.+|+++
T Consensus       105 ~~~~~~~h~~~v~~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~  184 (416)
T 2pm9_A          105 SMARFSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEVISLAWNQSLAHVFASA  184 (416)
T ss_dssp             EEEECCCSSSCCCEEEECSSSTTBEEEECSSSCEEBCBTTTTSSCTTTCCCBCCCCSCCSSCCCCEEEECSSCTTEEEEE
T ss_pred             chhhccCCccceEEEEEcCCCCCEEEEEcCCCeEEEEECCCCccccccccccccccccCCCCCeeEEEeCCCCCcEEEEE
Confidence            45566677888999999998 8999999999999999998876      2222   2345566779999999 7899999


Q ss_pred             eCCCcEEEEeCCCC--------C------cccEEEEEEcCCC-CEEEEEeCCC---cEEEEecCCC-ceeeeee--cCCc
Q psy10953         72 ALDGIINIFDANTG--------H------SSWVLSTAFTRDG-KFFISASADH---TVRVWNFARR-ENMHTFK--HADQ  130 (181)
Q Consensus        72 ~~d~~v~i~d~~~~--------~------~~~v~~~~~s~~~-~~l~~~~~d~---~i~v~d~~~~-~~~~~~~--~~~~  130 (181)
                      +.|+.+++||++++        +      ...+.+++|+|++ +++++++.|+   .|++||++++ .....+.  |...
T Consensus       185 ~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~~~i~~~d~~~~~~~~~~~~~~~~~~  264 (416)
T 2pm9_A          185 GSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKG  264 (416)
T ss_dssp             SSSSCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSSCCCCEEETTSTTSCSBCCCSCCSSC
T ss_pred             cCCCCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCCceEEEEeCCCCCCCcEEeecCccCc
Confidence            99999999998743        2      5679999999997 6899999998   9999999986 4555554  7788


Q ss_pred             EEEEEEcc-CCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        131 VWCVCVAP-DGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       131 v~~~~~sp-~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      |.+++|+| ++++|++++.|+.|++|++.+++.+....+
T Consensus       265 v~~~~~s~~~~~~l~s~~~dg~v~~wd~~~~~~~~~~~~  303 (416)
T 2pm9_A          265 ILSLDWCHQDEHLLLSSGRDNTVLLWNPESAEQLSQFPA  303 (416)
T ss_dssp             EEEEEECSSCSSCEEEEESSSEEEEECSSSCCEEEEEEC
T ss_pred             eeEEEeCCCCCCeEEEEeCCCCEEEeeCCCCccceeecC
Confidence            99999999 999999999999999999998877665443

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.92  E-value=2.6e-23  Score=162.57  Aligned_cols=159  Identities=19%  Similarity=0.362  Sum_probs=132.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE----EEEEecCCceEEEEEECCCCC-EEEE--eeCCCc
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL----EQIFDTRGKFTLSIAYSTDGH-WIAS--GALDGI   76 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~----~~~~~~~~~~~~~~~~s~d~~-~l~~--~~~d~~   76 (181)
                      +..+..+...+..+.++|+|+++++++.|+.+++|+..+++.    ......+...+.+++|+|++. .+++  |+.|+.
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~  302 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  302 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred             eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence            455666777889999999999999999999999999987653    234445666778999999764 4444  457999


Q ss_pred             EEEEeCCCC-------CcccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEE
Q psy10953         77 INIFDANTG-------HSSWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        77 v~i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~  146 (181)
                      |++||+.++       +...+..+.|+|+++.+++++  .|+.|++||+.+++.+..+. |.+.|++++|+|+|++|+++
T Consensus       303 I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH~~~V~~l~~spdg~~l~S~  382 (420)
T 4gga_A          303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGHTSRVLSLTMSPDGATVASA  382 (420)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEE
T ss_pred             EEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCCCCCEEEEEEcCCCCEEEEE
Confidence            999999865       345688899999999887765  68999999999999888886 88999999999999999999


Q ss_pred             cCCCcEEEEeCCCCee
Q psy10953        147 GEDKAVHMYSYKPEEE  162 (181)
Q Consensus       147 ~~d~~v~i~~~~~~~~  162 (181)
                      +.|+.|++|++....+
T Consensus       383 s~D~tvriWdv~~~~~  398 (420)
T 4gga_A          383 AADETLRLWRCFELDP  398 (420)
T ss_dssp             ETTTEEEEECCSCSSC
T ss_pred             ecCCeEEEEECCCCCc
Confidence            9999999999876443

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.2e-23  Score=155.51  Aligned_cols=156  Identities=23%  Similarity=0.429  Sum_probs=133.1

Q ss_pred             ceeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      .+..+..+...+.+++|+| +++++++++.|+.|++||  .++....+.. +...+.+++|+|++. +++++.|+.+++|
T Consensus       134 ~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~i~i~d--~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~i~i~  210 (313)
T 3odt_A          134 LVYNLQAHNASVWDAKVVSFSENKFLTASADKTIKLWQ--NDKVIKTFSGIHNDVVRHLAVVDDGH-FISCSNDGLIKLV  210 (313)
T ss_dssp             EEEEEECCSSCEEEEEEEETTTTEEEEEETTSCEEEEE--TTEEEEEECSSCSSCEEEEEEEETTE-EEEEETTSEEEEE
T ss_pred             EEEecccCCCceeEEEEccCCCCEEEEEECCCCEEEEe--cCceEEEEeccCcccEEEEEEcCCCe-EEEccCCCeEEEE
Confidence            3455666777889999988 999999999999999999  4555555555 667788999999998 9999999999999


Q ss_pred             eCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         81 DANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        81 d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      |+++        +|...|.+++|+|++ .+++++.|+.|++||+.+++.+..+. +...+++++|+|+++ +++++.|+.
T Consensus       211 d~~~~~~~~~~~~~~~~i~~~~~~~~~-~l~~~~~dg~v~iwd~~~~~~~~~~~~~~~~i~~~~~~~~~~-~~~~~~dg~  288 (313)
T 3odt_A          211 DMHTGDVLRTYEGHESFVYCIKLLPNG-DIVSCGEDRTVRIWSKENGSLKQVITLPAISIWSVDCMSNGD-IIVGSSDNL  288 (313)
T ss_dssp             ETTTCCEEEEEECCSSCEEEEEECTTS-CEEEEETTSEEEEECTTTCCEEEEEECSSSCEEEEEECTTSC-EEEEETTSC
T ss_pred             ECCchhhhhhhhcCCceEEEEEEecCC-CEEEEecCCEEEEEECCCCceeEEEeccCceEEEEEEccCCC-EEEEeCCCc
Confidence            9975        367789999999999 58899999999999999998887776 666899999999998 566889999


Q ss_pred             EEEEeCCCCeeE
Q psy10953        152 VHMYSYKPEEEV  163 (181)
Q Consensus       152 v~i~~~~~~~~~  163 (181)
                      |++|++.+++.+
T Consensus       289 i~iw~~~~~~~~  300 (313)
T 3odt_A          289 VRIFSQEKSRWA  300 (313)
T ss_dssp             EEEEESCGGGCC
T ss_pred             EEEEeCCCCcee
Confidence            999999876543

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=9.1e-24  Score=165.79  Aligned_cols=154  Identities=16%  Similarity=0.296  Sum_probs=131.5

Q ss_pred             eeccCeeeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCC----------CcEEEEEecCCceEEEEEECCCCC-EEEEeeC
Q psy10953          6 KINVGPVDMWNVVFSPD-DKYVLSGSQSGKINLYGVET----------GKLEQIFDTRGKFTLSIAYSTDGH-WIASGAL   73 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~----------~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~   73 (181)
                      ....+...+.+++|+|+ ++++++++.||.|++||+..          .+....+..|...+.+++|+|++. +|++++.
T Consensus       123 ~~~~h~~~v~~l~~~p~~~~~lat~~~dg~V~vwd~~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~  202 (430)
T 2xyi_A          123 IKINHEGEVNRARYMPQNACVIATKTPSSDVLVFDYTKHPSKPEPSGECQPDLRLRGHQKEGYGLSWNPNLNGYLLSASD  202 (430)
T ss_dssp             EEEEESSCCSEEEEETTEEEEEEEECSSSCEEEEEGGGSCSSCCTTCCCCCSEEEECCSSCCCCEEECTTSTTEEEEECT
T ss_pred             EEEcCCCcEEEEEECCCCCcEEEEECCCCcEEEEECCCcccccCccccCCCcEEecCCCCCeEEEEeCCCCCCeEEEEeC
Confidence            34445667889999997 77899999999999999976          455566667777778999999998 9999999


Q ss_pred             CCcEEEEeCCC---------------CCcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC---ceeeee-ecCCcEEE
Q psy10953         74 DGIINIFDANT---------------GHSSWVLSTAFTR-DGKFFISASADHTVRVWNFARR---ENMHTF-KHADQVWC  133 (181)
Q Consensus        74 d~~v~i~d~~~---------------~~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~---~~~~~~-~~~~~v~~  133 (181)
                      ||.|++||+..               +|...|.+++|+| ++.++++++.|+.|++||+++.   ..+..+ .|...|++
T Consensus       203 dg~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~  282 (430)
T 2xyi_A          203 DHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNC  282 (430)
T ss_dssp             TSCEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEE
T ss_pred             CCeEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEE
Confidence            99999999875               4667799999999 6789999999999999999976   345555 47788999


Q ss_pred             EEEccCCC-EEEEEcCCCcEEEEeCCC
Q psy10953        134 VCVAPDGD-KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       134 ~~~sp~g~-~l~~~~~d~~v~i~~~~~  159 (181)
                      ++|+|+++ .+++++.|+.|++|++..
T Consensus       283 i~~~p~~~~~l~tg~~dg~v~vwd~~~  309 (430)
T 2xyi_A          283 LSFNPYSEFILATGSADKTVALWDLRN  309 (430)
T ss_dssp             EEECSSCTTEEEEEETTSEEEEEETTC
T ss_pred             EEeCCCCCCEEEEEeCCCeEEEEeCCC
Confidence            99999997 688999999999999986

>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}

Probab=99.92  E-value=4.4e-24  Score=167.10  Aligned_cols=154  Identities=14%  Similarity=0.250  Sum_probs=129.4

Q ss_pred             EEEEE--EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         14 MWNVV--FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        14 ~~~~~--~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      +.++.  ++|+++++++++.|++|++||+++++....+..  +...+.+++|+|++++|++++.|+.|++||++.     
T Consensus       171 ~~~~~~~~~~~~~~l~~~~~d~~i~iwd~~~~~~~~~~~~~~h~~~v~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~  250 (437)
T 3gre_A          171 AVRMRAFVNEEKSLLVALTNLSRVIIFDIRTLERLQIIENSPRHGAVSSICIDEECCVLILGTTRGIIDIWDIRFNVLIR  250 (437)
T ss_dssp             EEEEEEEECSSCEEEEEEETTSEEEEEETTTCCEEEEEECCGGGCCEEEEEECTTSCEEEEEETTSCEEEEETTTTEEEE
T ss_pred             ceEEEEEEcCCCCEEEEEeCCCeEEEEeCCCCeeeEEEccCCCCCceEEEEECCCCCEEEEEcCCCeEEEEEcCCccEEE
Confidence            44444  668899999999999999999999999888876  566788999999999999999999999999864     


Q ss_pred             ----CCcccEEEEEEc----CCCCEEEEEeCCCcEEEEecCCCceeeeee---------------------------cCC
Q psy10953         85 ----GHSSWVLSTAFT----RDGKFFISASADHTVRVWNFARRENMHTFK---------------------------HAD  129 (181)
Q Consensus        85 ----~~~~~v~~~~~s----~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------------------------~~~  129 (181)
                          .|...|.+++|+    |+++++++++.|+.|++||+.+++.+..+.                           |..
T Consensus       251 ~~~~~~~~~v~~~~~~~~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  330 (437)
T 3gre_A          251 SWSFGDHAPITHVEVCQFYGKNSVIVVGGSSKTFLTIWNFVKGHCQYAFINSDEQPSMEHFLPIEKGLEELNFCGIRSLN  330 (437)
T ss_dssp             EEBCTTCEEEEEEEECTTTCTTEEEEEEESTTEEEEEEETTTTEEEEEEESSSSCCCGGGGSCBCSSGGGCCCCCCCSGG
T ss_pred             EEecCCCCceEEEEeccccCCCccEEEEEcCCCcEEEEEcCCCcEEEEEEcCCCCCccceecccccccccceecccccCC
Confidence                345678899555    568899999999999999999887665554                           445


Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .|++++|+ ++++|++++.|+.|++|++.+++.+....+
T Consensus       331 ~v~~l~~~-~~~~l~s~~~d~~i~~wd~~~~~~~~~~~~  368 (437)
T 3gre_A          331 ALSTISVS-NDKILLTDEATSSIVMFSLNELSSSKAVIS  368 (437)
T ss_dssp             GGCCEEEE-TTEEEEEEGGGTEEEEEETTCGGGCEEEEC
T ss_pred             ceEEEEEC-CceEEEecCCCCeEEEEECCCcccceEEec
Confidence            68899999 778999999999999999998876554443

>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}

Probab=99.92  E-value=1.3e-23  Score=159.41  Aligned_cols=152  Identities=11%  Similarity=0.239  Sum_probs=130.9

Q ss_pred             CeeeEEEEEEcCC---CCEEEEEeCCCcEEEEeCCCCc-EEEEEecCCceEEEE------EECCCCCEEEEeeCCCcEEE
Q psy10953         10 GPVDMWNVVFSPD---DKYVLSGSQSGKINLYGVETGK-LEQIFDTRGKFTLSI------AYSTDGHWIASGALDGIINI   79 (181)
Q Consensus        10 ~~~~~~~~~~s~~---g~~l~~~~~d~~i~~~d~~~~~-~~~~~~~~~~~~~~~------~~s~d~~~l~~~~~d~~v~i   79 (181)
                      +...+.+++|+|+   |++|++++.|+.|++||+.+++ ....+..+...+.++      +|+|++++|++++.|+.+++
T Consensus        64 ~~~~v~~~~~~~~~~~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~~v~~~~~~~~~~~s~~~~~l~~~~~d~~i~v  143 (357)
T 3i2n_A           64 KAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTVKV  143 (357)
T ss_dssp             ESSCEEEEECTTCCTTTCCEEEEETTSCEEEECTTSCSSCSEEECCCSSCEEEEEEESGGGCC-CCCEEEEEETTSCEEE
T ss_pred             ccCcEEEEEEcCCCCCCceEEEecCCCeEEEEeCCCCCccEEEEEecccceEEEeeccccccCCCccEEEEEeCCCeEEE
Confidence            4556899999999   7999999999999999999887 777777777777788      45789999999999999999


Q ss_pred             EeCCCCC-------------cccEEEEE----EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEcc---C
Q psy10953         80 FDANTGH-------------SSWVLSTA----FTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAP---D  139 (181)
Q Consensus        80 ~d~~~~~-------------~~~v~~~~----~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp---~  139 (181)
                      ||+..+.             ...+.+++    |+|+++++++++.|+.|++||+++++......+...+.+++|+|   +
T Consensus       144 wd~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~v~~~~~~~~~~~  223 (357)
T 3i2n_A          144 WDPRQKDDPVANMEPVQGENKRDCWTVAFGNAYNQEERVVCAGYDNGDIKLFDLRNMALRWETNIKNGVCSLEFDRKDIS  223 (357)
T ss_dssp             ECTTSCSSCSEEECCCTTSCCCCEEEEEEECCCC-CCCEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEESCSSSS
T ss_pred             EeCCCCCCcceeccccCCCCCCceEEEEEEeccCCCCCEEEEEccCCeEEEEECccCceeeecCCCCceEEEEcCCCCCC
Confidence            9987542             22677777    78999999999999999999999988877777888999999999   9


Q ss_pred             CCEEEEEcCCCcEEEEeCCCCe
Q psy10953        140 GDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       140 g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                      ++++++++.|+.|++|++..+.
T Consensus       224 ~~~l~~~~~dg~i~i~d~~~~~  245 (357)
T 3i2n_A          224 MNKLVATSLEGKFHVFDMRTQH  245 (357)
T ss_dssp             CCEEEEEESTTEEEEEEEEEEE
T ss_pred             CCEEEEECCCCeEEEEeCcCCC
Confidence            9999999999999999986543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=1.1e-23  Score=176.00  Aligned_cols=156  Identities=26%  Similarity=0.339  Sum_probs=132.9

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEEecCCceEEEEEECCC--CCEEEEeeCCCcEEEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE--TGKLEQIFDTRGKFTLSIAYSTD--GHWIASGALDGIINIF   80 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v~i~   80 (181)
                      ..+..+...+.+++|+|+|+++++|+.||+|++||+.  +++....+..|...+.+++|+|+  +++|++++.||.|++|
T Consensus         3 ~~l~gH~~~V~~l~~s~dg~~latg~~dg~I~vwd~~~~~~~~~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vw   82 (753)
T 3jro_A            3 VIANAHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIW   82 (753)
T ss_dssp             -----CCCCEEEECCCSSSCCEEEEETTTEEEEEEEETTEEEEEEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEE
T ss_pred             eecccCcceeEEEEECCCCCeEEEEECCCcEEEEecCCCCCccceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEE
Confidence            3456778889999999999999999999999999998  44566677777788889999988  9999999999999999


Q ss_pred             eCCCC----------CcccEEEEEEcCC--CCEEEEEeCCCcEEEEecCCCcee--e-eeecCCcEEEEEEcc-------
Q psy10953         81 DANTG----------HSSWVLSTAFTRD--GKFFISASADHTVRVWNFARRENM--H-TFKHADQVWCVCVAP-------  138 (181)
Q Consensus        81 d~~~~----------~~~~v~~~~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~--~-~~~~~~~v~~~~~sp-------  138 (181)
                      |+.++          |...|.+++|+|+  ++.+++++.|+.|++||++.+...  . ...|...|.+++|+|       
T Consensus        83 d~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~  162 (753)
T 3jro_A           83 KEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKVSVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDG  162 (753)
T ss_dssp             EEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEEEEEECCSSSCCCCEEEECCSSCEEEEEECCCC-----
T ss_pred             ECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcEEEEEeecCCCcceeEeecCCCceEEEEecCccccccc
Confidence            98653          6778999999999  999999999999999999876322  2 224778899999999       


Q ss_pred             ------CCCEEEEEcCCCcEEEEeCCCC
Q psy10953        139 ------DGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       139 ------~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                            +++.+++++.|+.|++|++..+
T Consensus       163 ~~~~~~d~~~l~sgs~dg~I~iwd~~~~  190 (753)
T 3jro_A          163 EHNGTKESRKFVTGGADNLVKIWKYNSD  190 (753)
T ss_dssp             ----CGGGCCEEEEETTSCEEEEEEETT
T ss_pred             ccccCCCCCEEEEEECCCeEEEEeccCC
Confidence                  5899999999999999998765

>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B

Probab=99.92  E-value=5.2e-23  Score=161.48  Aligned_cols=157  Identities=13%  Similarity=0.269  Sum_probs=131.7

Q ss_pred             eeeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCC---cEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEE
Q psy10953          4 ISKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETG---KLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIIN   78 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~---~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~   78 (181)
                      +..+..+...+.+++|+| ++.++++++.|+.|++||++++   +....+..+...+.+++|+|+++ .|++++.|+.|+
T Consensus       224 ~~~~~~h~~~v~~v~~~p~~~~~l~s~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~~l~tg~~dg~v~  303 (430)
T 2xyi_A          224 KNIFTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILATGSADKTVA  303 (430)
T ss_dssp             SEEECCCSSCEEEEEECSSCTTEEEEEETTSEEEEEETTCSCSSSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSEEE
T ss_pred             ceeecCCCCCEeeeEEeCCCCCEEEEEeCCCeEEEEECCCCCCCcceeEeecCCCCeEEEEeCCCCCCEEEEEeCCCeEE
Confidence            344556777799999999 7788999999999999999977   45566666777788999999997 688999999999


Q ss_pred             EEeCCC---------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCC--------------ceeeeee-cCCcEEE
Q psy10953         79 IFDANT---------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARR--------------ENMHTFK-HADQVWC  133 (181)
Q Consensus        79 i~d~~~---------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~--------------~~~~~~~-~~~~v~~  133 (181)
                      +||++.         +|...|.+++|+|+++ +|++++.|+.|++||+...              ..+..+. |...|++
T Consensus       304 vwd~~~~~~~~~~~~~h~~~v~~i~~sp~~~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~  383 (430)
T 2xyi_A          304 LWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISD  383 (430)
T ss_dssp             EEETTCTTSCSEEEECCSSCEEEEEECSSCTTEEEEEETTSCCEEEEGGGTTCCCCHHHHHHCCTTEEEECCCCSSCEEE
T ss_pred             EEeCCCCCCCeEEeecCCCCEEEEEECCCCCCEEEEEeCCCcEEEEeCCCCccccCccccccCCcceEEEcCCCCCCceE
Confidence            999975         3667899999999995 7999999999999999762              3333333 6778999


Q ss_pred             EEEccCCC-EEEEEcCCCcEEEEeCCCC
Q psy10953        134 VCVAPDGD-KFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       134 ~~~sp~g~-~l~~~~~d~~v~i~~~~~~  160 (181)
                      ++|+|+++ ++++++.|+.|++|++...
T Consensus       384 ~~~~p~~~~~l~s~s~dg~i~iw~~~~~  411 (430)
T 2xyi_A          384 FSWNPNEPWIICSVSEDNIMQVWQMAEN  411 (430)
T ss_dssp             EEECSSSTTEEEEEETTSEEEEEEECHH
T ss_pred             EEECCCCCCEEEEEECCCCEEEeEcccc
Confidence            99999999 8999999999999998643

>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*

Probab=99.92  E-value=7.4e-23  Score=177.95  Aligned_cols=166  Identities=22%  Similarity=0.371  Sum_probs=143.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC--CCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST--DGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i~   80 (181)
                      .+..+..+...+.+++|+|+|+++++++.|++|++||+.+++....+..+...+.+++|+|  ++..+++++.|+.+++|
T Consensus       649 ~~~~~~~h~~~v~~~~~s~~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~sg~~d~~v~vw  728 (1249)
T 3sfz_A          649 KLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLLATGSNDFFLKLW  728 (1249)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECSSSSCCEEEEEETTSCEEEE
T ss_pred             EEEEeccCCCCEEEEEEecCCCEEEEEeCCCeEEEEECCCCceEEEEcCCCCcEEEEEEecCCCceEEEEEeCCCeEEEE
Confidence            4556677888899999999999999999999999999999999998888888888999999  55689999999999999


Q ss_pred             eCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee---------------------------
Q psy10953         81 DANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---------------------------  125 (181)
Q Consensus        81 d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---------------------------  125 (181)
                      |+.+        +|...|.+++|+|+++++++++.|+.|++||+.++.....+                           
T Consensus       729 d~~~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~  808 (1249)
T 3sfz_A          729 DLNQKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSA  808 (1249)
T ss_dssp             ETTSSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEEEEEEECCCCC--------CCCCCBCCCCBCT
T ss_pred             ECCCcchhheecCCCCCEEEEEEecCCCEEEEEECCCeEEEEeCCCCcccceecccccccccCCccccccceEEEEEECC
Confidence            9874        47788999999999999999999999999998765332211                           


Q ss_pred             -----------------------------ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        126 -----------------------------KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       126 -----------------------------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                                                   .|...+.+++|+|+++++++++.|+.|++|++.++..+....+
T Consensus       809 dg~~l~~~~~~~v~~~d~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~vwd~~~~~~~~~~~~  880 (1249)
T 3sfz_A          809 DGDKIIVAAKNKVLLFDIHTSGLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRG  880 (1249)
T ss_dssp             TSSEEEEEETTEEEEEETTTCCEEEEEECSSSSCCCEEEECSSTTEEEEECSSSCEEEEETTTTEEEEEECC
T ss_pred             CCCEEEEEcCCcEEEEEecCCCceeEEcCCCCCceEEEEEcCCCCEEEEEeCCCeEEEEEcCCCceeeecCC
Confidence                                         2455688999999999999999999999999998877765554

>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}

Probab=99.92  E-value=8.2e-23  Score=157.44  Aligned_cols=157  Identities=17%  Similarity=0.292  Sum_probs=133.9

Q ss_pred             eeeccCeeeEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEe-------------cCCceEEEEEECC-CCCEEE
Q psy10953          5 SKINVGPVDMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFD-------------TRGKFTLSIAYST-DGHWIA   69 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-------------~~~~~~~~~~~s~-d~~~l~   69 (181)
                      ..+..+...+.+++|+| ++++|++++.|++|++||+.+++....+.             .+...+.+++|+| ++.+|+
T Consensus        37 ~~~~~h~~~v~~~~~s~~~~~~l~~~~~dg~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~  116 (408)
T 4a11_B           37 DVERIHGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSRQSYYTCKAVCSIGRDHPDVHRYSVETVQWYPHDTGMFT  116 (408)
T ss_dssp             EECCCCSSCEEEEEECTTTCCEEEEEETTSCEEEEECCCCSSSSCEEECEEEEECTTCTTCCSSCEEEEEECTTCTTCEE
T ss_pred             eeeeccCCcEEEEEEecCCCCEEEEEcCCCeEEEEECCCCcccceEeccccccccccccccCCCcEEEEEEccCCCcEEE
Confidence            34455778899999999 99999999999999999999876654443             2566788999999 778999


Q ss_pred             EeeCCCcEEEEeCCCC-------CcccEEEEEEcCC---CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc
Q psy10953         70 SGALDGIINIFDANTG-------HSSWVLSTAFTRD---GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP  138 (181)
Q Consensus        70 ~~~~d~~v~i~d~~~~-------~~~~v~~~~~s~~---~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp  138 (181)
                      +++.|+.+++||+.++       +...+..+.++|.   +.++++++.++.|++||+.+++.+..+. |...|.+++|+|
T Consensus       117 s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~v~~~~~~~  196 (408)
T 4a11_B          117 SSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHCLVAVGTRGPKVQLCDLKSGSCSHILQGHRQEILAVSWSP  196 (408)
T ss_dssp             EEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSSCSSCCEEEEEESSSSEEEEESSSSCCCEEECCCCSCEEEEEECS
T ss_pred             EEeCCCeEEEeeCCCCccceeccCCCceeeeEeecCCCCCcEEEEEcCCCeEEEEeCCCcceeeeecCCCCcEEEEEECC
Confidence            9999999999999764       3456788889885   4599999999999999999988777776 788999999999


Q ss_pred             CCC-EEEEEcCCCcEEEEeCCCCe
Q psy10953        139 DGD-KFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       139 ~g~-~l~~~~~d~~v~i~~~~~~~  161 (181)
                      +++ .+++++.|+.|++|++..+.
T Consensus       197 ~~~~ll~~~~~dg~i~i~d~~~~~  220 (408)
T 4a11_B          197 RYDYILATASADSRVKLWDVRRAS  220 (408)
T ss_dssp             SCTTEEEEEETTSCEEEEETTCSS
T ss_pred             CCCcEEEEEcCCCcEEEEECCCCC
Confidence            999 48899999999999997654

>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A

Probab=99.92  E-value=2.3e-23  Score=157.48  Aligned_cols=161  Identities=11%  Similarity=0.133  Sum_probs=135.7

Q ss_pred             eeecc--CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC---------CcEEEEEecCCceEEEEEECCCCCEEEEeeC
Q psy10953          5 SKINV--GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET---------GKLEQIFDTRGKFTLSIAYSTDGHWIASGAL   73 (181)
Q Consensus         5 ~~~~~--~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~---------~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~   73 (181)
                      ..+..  +...+.+++|+| ++++++++.|+.|++||+++         ++....+. +...+.+++|+|++  +++++.
T Consensus        93 ~~~~~~~~~~~v~~l~~~~-~~~l~s~~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~--l~~~~~  168 (342)
T 1yfq_A           93 QALTNNEANLGICRICKYG-DDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTK-VKNKIFTMDTNSSR--LIVGMN  168 (342)
T ss_dssp             EECBSCCCCSCEEEEEEET-TTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSS-SCCCEEEEEECSSE--EEEEES
T ss_pred             EeccccCCCCceEEEEeCC-CCEEEEEcCCCeEEEEcccccccccccccCCeeeEEe-eCCceEEEEecCCc--EEEEeC
Confidence            44555  777899999999 99999999999999999987         66555555 55567899999987  899999


Q ss_pred             CCcEEEEeCCC-C----------CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCC------ceeeeee-cCC-----
Q psy10953         74 DGIINIFDANT-G----------HSSWVLSTAFTR-DGKFFISASADHTVRVWNFARR------ENMHTFK-HAD-----  129 (181)
Q Consensus        74 d~~v~i~d~~~-~----------~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~------~~~~~~~-~~~-----  129 (181)
                      |+.+++||++. .          +...+.+++|+| +++++++++.|+.+++|++...      .....+. |..     
T Consensus       169 d~~i~i~d~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~l~~~~~dg~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~  248 (342)
T 1yfq_A          169 NSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDT  248 (342)
T ss_dssp             TTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCC
T ss_pred             CCeEEEEECCccccccceeeecCCCCceeEEEECCCCCCEEEEEecCCcEEEEEEcCCCcccccccceeeeccccccccc
Confidence            99999999976 3          345689999999 9999999999999999999876      5555554 433     


Q ss_pred             ----cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        130 ----QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       130 ----~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                          .|.+++|+|++++|++++.|+.|++|++.+++.+....+.
T Consensus       249 ~~~~~i~~~~~s~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~  292 (342)
T 1yfq_A          249 NLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKF  292 (342)
T ss_dssp             SSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCC
T ss_pred             ccceeEEEEEEcCCCCEEEEecCCceEEEEcCccHhHhhhhhcc
Confidence                8999999999999999999999999999988887765543

>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.8e-23  Score=173.46  Aligned_cols=157  Identities=20%  Similarity=0.370  Sum_probs=136.2

Q ss_pred             eeeeccCeeeEEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCc--EEEEEecCCceEEEEEECCC--CCEEEEeeCCCcE
Q psy10953          4 ISKINVGPVDMWNVVFSPD--DKYVLSGSQSGKINLYGVETGK--LEQIFDTRGKFTLSIAYSTD--GHWIASGALDGII   77 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~--g~~l~~~~~d~~i~~~d~~~~~--~~~~~~~~~~~~~~~~~s~d--~~~l~~~~~d~~v   77 (181)
                      +..+..+...+++++|+|+  +++|++|+.||+|++||+.+++  ....+..+...+.+++|+|+  ++.+++++.|+.|
T Consensus        46 ~~~l~~h~~~V~~l~~s~~~~~~~l~s~s~Dg~I~vwd~~~~~~~~~~~~~~h~~~V~~v~~sp~~~~~~l~sgs~dg~I  125 (753)
T 3jro_A           46 IDTLTGHEGPVWRVDWAHPKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGKV  125 (753)
T ss_dssp             EEEECCCSSCEEEEEECCTTSCSEEEEEETTSCEEEEEEETTEEEEEEEECCCSSCEEEEEECCGGGCSEEEEEETTSEE
T ss_pred             ceeccCCcCceEEEEecCCCCCCEEEEEeCCCeEEEEECCCCcccccccccCCCCCeEEEEECCCCCCCEEEEEeCCCcE
Confidence            4556677788999999988  9999999999999999999887  45556667777889999999  9999999999999


Q ss_pred             EEEeCCCC----------CcccEEEEEEcC-------------CCCEEEEEeCCCcEEEEecCCCc----eeeeee-cCC
Q psy10953         78 NIFDANTG----------HSSWVLSTAFTR-------------DGKFFISASADHTVRVWNFARRE----NMHTFK-HAD  129 (181)
Q Consensus        78 ~i~d~~~~----------~~~~v~~~~~s~-------------~~~~l~~~~~d~~i~v~d~~~~~----~~~~~~-~~~  129 (181)
                      ++||+..+          |...|.+++|+|             +++++++++.|+.|++||++.+.    ....+. |..
T Consensus       126 ~vwdl~~~~~~~~~~~~~~~~~v~~l~~~p~~~~~~~~~~~~~d~~~l~sgs~dg~I~iwd~~~~~~~~~~~~~~~~h~~  205 (753)
T 3jro_A          126 SVVEFKENGTTSPIIIDAHAIGVNSASWAPATIEEDGEHNGTKESRKFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSD  205 (753)
T ss_dssp             EEEECCSSSCCCCEEEECCSSCEEEEEECCCC---------CGGGCCEEEEETTSCEEEEEEETTTTEEEEEEEECCCSS
T ss_pred             EEEEeecCCCcceeEeecCCCceEEEEecCcccccccccccCCCCCEEEEEECCCeEEEEeccCCcccceeeeeecCCCC
Confidence            99998653          567799999999             58999999999999999998763    333343 788


Q ss_pred             cEEEEEEccC---CCEEEEEcCCCcEEEEeCCCC
Q psy10953        130 QVWCVCVAPD---GDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       130 ~v~~~~~sp~---g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      .|++++|+|+   ++++++++.|+.|++|++..+
T Consensus       206 ~V~~l~~sp~~~~~~~l~s~s~Dg~I~iwd~~~~  239 (753)
T 3jro_A          206 WVRDVAWSPTVLLRSYLASVSQDRTCIIWTQDNE  239 (753)
T ss_dssp             CEEEEEECCCCSSSEEEEEEESSSCEEEEEESSS
T ss_pred             cEEEEEeccCCCCCCEEEEEecCCEEEEecCCCC
Confidence            8999999999   899999999999999999775

>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}

Probab=99.92  E-value=2.1e-22  Score=150.17  Aligned_cols=151  Identities=26%  Similarity=0.387  Sum_probs=132.8

Q ss_pred             cceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953          2 KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus         2 ~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      +.+..+..+...+.+++| |++++|++++.|+.|++||+.+++....+..+...+.+++|+|++++|++++.|+.+++|+
T Consensus         9 ~~~~~l~~h~~~v~~~~~-~~~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~dg~i~~~~   87 (313)
T 3odt_A            9 QLSATLKGHDQDVRDVVA-VDDSKVASVSRDGTVRLWSKDDQWLGTVVYTGQGFLNSVCYDSEKELLLFGGKDTMINGVP   87 (313)
T ss_dssp             EEEEEECCCSSCEEEEEE-EETTEEEEEETTSEEEEEEESSSEEEEEEEECSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred             HHHHHhhCCCCCcEEEEe-cCCCEEEEEEcCCcEEEEECCCCEEEEEeecCCccEEEEEECCCCCEEEEecCCCeEEEEE
Confidence            345677888889999999 9999999999999999999999988888888888888999999999999999999999999


Q ss_pred             CCC-----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEcc-CCCEEEEEcC
Q psy10953         82 ANT-----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP-DGDKFVSVGE  148 (181)
Q Consensus        82 ~~~-----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp-~g~~l~~~~~  148 (181)
                      +..           +|...|.++.|  +++++++++.|+.|++||  .......+. |...+.+++++| +++.+++++.
T Consensus        88 ~~~~~~~~~~~~~~~~~~~i~~~~~--~~~~l~~~~~d~~i~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~  163 (313)
T 3odt_A           88 LFATSGEDPLYTLIGHQGNVCSLSF--QDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASA  163 (313)
T ss_dssp             TTCCTTSCC-CEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEE--TTEEEEEEECCSSCEEEEEEEETTTTEEEEEET
T ss_pred             eeecCCCCcccchhhcccCEEEEEe--cCCEEEEEeCCCCEEEEc--CCcEEEecccCCCceeEEEEccCCCCEEEEEEC
Confidence            753           36677888888  678999999999999999  444555554 778899999998 9999999999


Q ss_pred             CCcEEEEeC
Q psy10953        149 DKAVHMYSY  157 (181)
Q Consensus       149 d~~v~i~~~  157 (181)
                      |+.|++|+.
T Consensus       164 d~~i~i~d~  172 (313)
T 3odt_A          164 DKTIKLWQN  172 (313)
T ss_dssp             TSCEEEEET
T ss_pred             CCCEEEEec
Confidence            999999994

>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}

Probab=99.92  E-value=2.8e-23  Score=157.83  Aligned_cols=161  Identities=14%  Similarity=0.243  Sum_probs=133.3

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEE--CCCCCEEEEeeCCCcEEEEeC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY--STDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~--s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ..+..+...+.+++|+|++++|++++.|++|++||+++++...... +...+.+++|  ++++++|++++.|+.+++||+
T Consensus        80 ~~~~~h~~~v~~~~~~~~~~~l~s~~~dg~v~iwd~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~l~~~~~dg~i~vwd~  158 (368)
T 3mmy_A           80 KAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAIQIAQ-HDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDT  158 (368)
T ss_dssp             EEEEECSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEE-CSSCEEEEEEEECSSCEEEEEEETTSEEEEECS
T ss_pred             EEeccccCCEEEEEECcCCCEEEEEcCCCcEEEEEcCCCCceeecc-ccCceEEEEEEeCCCCCEEEEccCCCcEEEEEC
Confidence            4455577779999999999999999999999999999998877554 5566778999  999999999999999999986


Q ss_pred             CCCC----------------------------------------------------------------------------
Q psy10953         83 NTGH----------------------------------------------------------------------------   86 (181)
Q Consensus        83 ~~~~----------------------------------------------------------------------------   86 (181)
                      +++.                                                                            
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg  238 (368)
T 3mmy_A          159 RSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVYQLENQPSEFRRIESPLKHQHRCVAIFKDKQNKPTGFALGSIEG  238 (368)
T ss_dssp             SCSSCSEEEECSSCEEEEEEETTEEEEEEGGGCEEEEECSSSCEEEEECCCSCSSCEEEEEEEECTTSCEEEEEEEETTS
T ss_pred             CCCcEEEEEecCCCceEEEecCCeeEEEeCCCcEEEEEeccccchhhhccccccCCCceEEEcccCCCCCCeEEEecCCC
Confidence            4210                                                                            


Q ss_pred             ----------------------cc------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcE
Q psy10953         87 ----------------------SS------------WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV  131 (181)
Q Consensus        87 ----------------------~~------------~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v  131 (181)
                                            ..            .|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|
T Consensus       239 ~i~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~sp~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~~~~~v  318 (368)
T 3mmy_A          239 RVAIHYINPPNPAKDNFTFKCHRSNGTNTSAPQDIYAVNGIAFHPVHGTLATVGSDGRFSFWDKDARTKLKTSEQLDQPI  318 (368)
T ss_dssp             EEEEEESSCSCHHHHSEEEECSEEC----CCCEEECCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSCE
T ss_pred             cEEEEecCCCCccccceeeeeeecccccccccccccceEEEEEecCCCEEEEEccCCeEEEEECCCCcEEEEecCCCCCc
Confidence                                  01            48889999999999999999999999999998887776 77889


Q ss_pred             EEEEEccCCCEEEEEcCCCcEE---EEeCCCCeeEEEc
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVH---MYSYKPEEEVEVN  166 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~---i~~~~~~~~~~~~  166 (181)
                      ++++|+|+|++|++++.|+..+   +|+.+....+.+.
T Consensus       319 ~~~~~s~~g~~l~~~s~d~~~~~~~~~~~~~~~~i~~~  356 (368)
T 3mmy_A          319 SACCFNHNGNIFAYASSYDWSKGHEFYNPQKKNYIFLR  356 (368)
T ss_dssp             EEEEECTTSSCEEEEECCCSTTCGGGCCTTSCCEEEEE
T ss_pred             eEEEECCCCCeEEEEecccccccccccCCCccceeeeh
Confidence            9999999999999999886544   4445555555443

>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}

Probab=99.91  E-value=3.7e-23  Score=157.65  Aligned_cols=148  Identities=14%  Similarity=0.130  Sum_probs=120.8

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCC---------CCcEEEEEe-cCCceEEEEEECC--CCCEEEEeeCCCcEEE
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVE---------TGKLEQIFD-TRGKFTLSIAYST--DGHWIASGALDGIINI   79 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~---------~~~~~~~~~-~~~~~~~~~~~s~--d~~~l~~~~~d~~v~i   79 (181)
                      ..+..+.|+|+   +++++.|++|++|+..         +++.+..+. .+...+.+++|+|  +++++++++.|+.+++
T Consensus        77 ~~v~~~~~~~~---~~s~s~D~~i~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~l~s~s~dg~i~~  153 (343)
T 3lrv_A           77 PNPRTGGEHPA---IISRGPCNRLLLLYPGNQITILDSKTNKVLREIEVDSANEIIYMYGHNEVNTEYFIWADNRGTIGF  153 (343)
T ss_dssp             ECCCTTCCCCS---EEEECSTTEEEEEETTTEEEEEETTTCCEEEEEECCCSSCEEEEECCC---CCEEEEEETTCCEEE
T ss_pred             CCceeeeeCCc---eEEecCCCeEEEEEccCceEEeecCCcceeEEeecCCCCCEEEEEcCCCCCCCEEEEEeCCCcEEE
Confidence            33556677877   8999999999999655         555444443 3445678999999  9999999999999999


Q ss_pred             EeCCCC---------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee-eeee--cCCcEEEEEEccCCCEEEEEc
Q psy10953         80 FDANTG---------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM-HTFK--HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        80 ~d~~~~---------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~-~~~~--~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      ||++++         +...+.+++|+|+|+++++|+.|+.|++||+++++.+ ..+.  |...|.+++|+|+|++|++++
T Consensus       154 wd~~~~~~~~~~~~~~~~~i~~~~~~pdg~~lasg~~dg~i~iwd~~~~~~~~~~~~~~h~~~v~~l~fs~~g~~l~s~~  233 (343)
T 3lrv_A          154 QSYEDDSQYIVHSAKSDVEYSSGVLHKDSLLLALYSPDGILDVYNLSSPDQASSRFPVDEEAKIKEVKFADNGYWMVVEC  233 (343)
T ss_dssp             EESSSSCEEEEECCCSSCCCCEEEECTTSCEEEEECTTSCEEEEESSCTTSCCEECCCCTTSCEEEEEECTTSSEEEEEE
T ss_pred             EECCCCcEEEEEecCCCCceEEEEECCCCCEEEEEcCCCEEEEEECCCCCCCccEEeccCCCCEEEEEEeCCCCEEEEEe
Confidence            998753         2346889999999999999999999999999998766 4453  688999999999999999999


Q ss_pred             CCCcEEEEeCCCCeeE
Q psy10953        148 EDKAVHMYSYKPEEEV  163 (181)
Q Consensus       148 ~d~~v~i~~~~~~~~~  163 (181)
                       ++.|++||+..+..+
T Consensus       234 -~~~v~iwd~~~~~~~  248 (343)
T 3lrv_A          234 -DQTVVCFDLRKDVGT  248 (343)
T ss_dssp             -SSBEEEEETTSSTTC
T ss_pred             -CCeEEEEEcCCCCcc
Confidence             459999999876543

>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}

Probab=99.91  E-value=1.1e-22  Score=160.41  Aligned_cols=151  Identities=16%  Similarity=0.173  Sum_probs=130.5

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEE----EEecCCceEEEEEECCC---CCEEEEeeCCCcEEEEe
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQ----IFDTRGKFTLSIAYSTD---GHWIASGALDGIINIFD   81 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~----~~~~~~~~~~~~~~s~d---~~~l~~~~~d~~v~i~d   81 (181)
                      ..+..+.+++|+|+|++|++++.|+.+++|++.+++...    .+..+...+.+++|+|+   +++|++++.|+.|++||
T Consensus       147 ~~~~~v~~~~~sp~~~~l~~~~~~g~v~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~sp~~~~~~~l~s~~~d~~i~vwd  226 (450)
T 2vdu_B          147 CFSKRPNAISIAEDDTTVIIADKFGDVYSIDINSIPEEKFTQEPILGHVSMLTDVHLIKDSDGHQFIITSDRDEHIKISH  226 (450)
T ss_dssp             ECSSCEEEEEECTTSSEEEEEETTSEEEEEETTSCCCSSCCCCCSEECSSCEEEEEEEECTTSCEEEEEEETTSCEEEEE
T ss_pred             cCCCCceEEEEcCCCCEEEEEeCCCcEEEEecCCcccccccceeeecccCceEEEEEcCCCCCCcEEEEEcCCCcEEEEE
Confidence            345668999999999999999999999999998776543    55566777889999999   99999999999999999


Q ss_pred             CCC---------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-------------------------
Q psy10953         82 ANT---------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-------------------------  127 (181)
Q Consensus        82 ~~~---------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------------------------  127 (181)
                      +.+         +|...|.+++|+ ++++|++++.|+.|++||+.+++.+..+..                         
T Consensus       227 ~~~~~~~~~~~~~h~~~v~~~~~s-d~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (450)
T 2vdu_B          227 YPQCFIVDKWLFGHKHFVSSICCG-KDYLLLSAGGDDKIFAWDWKTGKNLSTFDYNSLIKPYLNDQHLAPPRFQNENNDI  305 (450)
T ss_dssp             ESCTTCEEEECCCCSSCEEEEEEC-STTEEEEEESSSEEEEEETTTCCEEEEEECHHHHGGGCCTTSBC----------C
T ss_pred             CCCCceeeeeecCCCCceEEEEEC-CCCEEEEEeCCCeEEEEECCCCcEeeeecchhhhhhhhhhccccccccccccccc
Confidence            863         467789999999 999999999999999999999887766541                         


Q ss_pred             -CCcEEEEEEccCCCEEEEEc-CCCcEEEEeC--CCC
Q psy10953        128 -ADQVWCVCVAPDGDKFVSVG-EDKAVHMYSY--KPE  160 (181)
Q Consensus       128 -~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~--~~~  160 (181)
                       ...+.+++++|+++++++++ .++.|++|++  ..+
T Consensus       306 ~~~~v~~i~~~~~~~~l~~~~~~d~~i~iw~~~~~~~  342 (450)
T 2vdu_B          306 IEFAVSKIIKSKNLPFVAFFVEATKCIIILEMSEKQK  342 (450)
T ss_dssp             BCCCEEEEEECSSSSEEEEEETTCSEEEEEEECSSST
T ss_pred             ceEEEEEEEEeCCCCEEEEEECCCCeEEEEEeccCCC
Confidence             23588999999999999998 7999999999  544

>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A

Probab=99.91  E-value=4.6e-22  Score=155.50  Aligned_cols=163  Identities=17%  Similarity=0.331  Sum_probs=131.3

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC----------------------------------
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR----------------------------------   52 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----------------------------------   52 (181)
                      +..+...|.+++|+|+|++|++|+.|++|++||+++++.+..+..|                                  
T Consensus       143 ~~~~~~~V~sv~fspdg~~lasgs~Dg~v~iWd~~~~~~~~~~~~h~~~v~~~s~~~~~l~sgs~d~~i~~~d~~~~~~~  222 (420)
T 4gga_A          143 MEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLSWNSYILSSGSRSGHIHHHDVRVAEHH  222 (420)
T ss_dssp             CCSTTCCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEETTSSSCE
T ss_pred             ecCCCCcEEEEEECCCCCEEEEEECCCeEEEEEcCCCcEEEEEeCCCCceEEEeeCCCEEEEEeCCCceeEeeeccccee
Confidence            3445667999999999999999999999999999988765544332                                  


Q ss_pred             -------CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC------------CCcccEEEEEEcCCCC-EEEE--EeCCCc
Q psy10953         53 -------GKFTLSIAYSTDGHWIASGALDGIINIFDANT------------GHSSWVLSTAFTRDGK-FFIS--ASADHT  110 (181)
Q Consensus        53 -------~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~------------~~~~~v~~~~~s~~~~-~l~~--~~~d~~  110 (181)
                             ...+..+.++|+++++++++.|+.+++|+...            .|...|.+++|+|++. .+++  ++.|+.
T Consensus       223 ~~~~~~h~~~~~~~~~~~~g~~l~s~~~D~~v~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~p~~~~~la~~~gs~D~~  302 (420)
T 4gga_A          223 VATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRH  302 (420)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCCSSCSCCSEEECCCSSCEEEEEECTTCTTEEEEEECTTTCE
T ss_pred             eEEecccccceeeeeecCCCCeeeeeeccccceEEeeccccccceeeeeecccCCceeeeeeCCCcccEEEEEeecCCCE
Confidence                   22344667778888888888888888888753            2456788999999764 5554  457899


Q ss_pred             EEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc--CCCcEEEEeCCCCeeEEEcCCC
Q psy10953        111 VRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG--EDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       111 i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~--~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      |++||+.++.....+.....+.+++|+|+++.+++++  .|+.|++|++.+++.+....+.
T Consensus       303 I~iwd~~t~~~~~~~~~~~~v~~~~~~~~~~~lv~~sg~~d~~I~iwd~~~~~~v~~l~gH  363 (420)
T 4gga_A          303 IRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH  363 (420)
T ss_dssp             EEEEETTTTEEEEEEECSSCEEEEEEETTTTEEEEEECTTTCCEEEEETTTCCEEEEECCC
T ss_pred             EEEEeCCccccceeeccccceeeeeecCCCCeEEEEEecCCCEEEEEECCCCcEEEEEcCC
Confidence            9999999999888888888899999999999988765  6899999999999888766653

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.91  E-value=8e-24  Score=164.48  Aligned_cols=159  Identities=9%  Similarity=0.101  Sum_probs=115.1

Q ss_pred             eccCeeeEEEEEEcC--------CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcE
Q psy10953          7 INVGPVDMWNVVFSP--------DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGII   77 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~--------~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v   77 (181)
                      +..+...|.+++|+|        ||++|++++.|++|++||+++++....+..+...+.+++|+|++. +|++++.|+.|
T Consensus       132 ~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v  211 (393)
T 4gq1_A          132 KSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLTDEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNI  211 (393)
T ss_dssp             TTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEETTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEE
T ss_pred             cCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECCCCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEE
Confidence            456778899999998        899999999999999999988776655555566678999999874 79999999999


Q ss_pred             EEEeCCCC---------------------------------CcccEEEEEEc-CCCCEEEEEeCCCcEEEEecCCCceee
Q psy10953         78 NIFDANTG---------------------------------HSSWVLSTAFT-RDGKFFISASADHTVRVWNFARRENMH  123 (181)
Q Consensus        78 ~i~d~~~~---------------------------------~~~~v~~~~~s-~~~~~l~~~~~d~~i~v~d~~~~~~~~  123 (181)
                      ++||++++                                 |...+..+.|+ |+++.+++++.|+.+++||+..+....
T Consensus       212 ~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          212 RIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIASSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             EEEETTCCC----------CSCCCSEEEESGGGC------CCSSSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             EEEECCCCcccccccccCCcccceEEecccccceeeeecccccccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence            99998642                                 33445667776 799999999999999999997655433


Q ss_pred             eee-cCCcEE------------------EEEEcc--CCCEEEEEcCCCcEEEEeCCCCeeEEE
Q psy10953        124 TFK-HADQVW------------------CVCVAP--DGDKFVSVGEDKAVHMYSYKPEEEVEV  165 (181)
Q Consensus       124 ~~~-~~~~v~------------------~~~~sp--~g~~l~~~~~d~~v~i~~~~~~~~~~~  165 (181)
                      .+. +...++                  ..+++|  ++.++++++.|+.|++|+..+++.+..
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sgs~Dg~V~lwd~~~~~~~~~  354 (393)
T 4gq1_A          292 EISDSTMKLGPKNLLPNVQGISLFPSLLGACPHPRYMDYFATAHSQHGLIQLINTYEKDSNSI  354 (393)
T ss_dssp             ------------CCSCSEEEECSSCCSSCCEECSSCTTEEEEEETTTTEEEEEETTCTTCCEE
T ss_pred             eEeeecCccccEEEccccccccccCcceeEEEccCCCCEEEEEECCCCEEEEEECCCCcEEEE
Confidence            322 222222                  233443  334567788899999999988765543

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.91  E-value=2.3e-22  Score=154.31  Aligned_cols=145  Identities=14%  Similarity=0.167  Sum_probs=116.6

Q ss_pred             EEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC----------------------------
Q psy10953         15 WNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG----------------------------   65 (181)
Q Consensus        15 ~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~----------------------------   65 (181)
                      ..+++.++++.+ ++++.|++|++||..+++.+..+..+. .+.++.++++.                            
T Consensus        62 ~~~~~~~~~~~~~~~~~~d~~v~iWd~~~~~~~~~~~~~~-~v~~v~~~~~~~~~~~~~~i~i~d~~~~~~~~~~~~~~~  140 (355)
T 3vu4_A           62 SKVRMLHRTNYVAFVTGVKEVVHIWDDVKKQDVSRIKVDA-PVKDLFLSREFIVVSYGDVISVFKFGNPWKRITDDIRFG  140 (355)
T ss_dssp             CEEEECTTSSEEEEECSSTTEEEEEETTTTEEEEEEECSS-CEEEEEECSSEEEEEETTEEEEEESSTTCCBSSCCEEEE
T ss_pred             EEEEEcCCCCEEEEEECCccEEEEEECCCCcEEEEEECCC-ceEEEEEcCCEEEEEEcCEEEEEECCCCceeeEEeccCC
Confidence            344455555554 345567799999999998887776443 45567776542                            


Q ss_pred             -------CEEEE--eeCCCcEEEEeCCC------------------------CCcccEEEEEEcCCCCEEEEEeCCCc-E
Q psy10953         66 -------HWIAS--GALDGIINIFDANT------------------------GHSSWVLSTAFTRDGKFFISASADHT-V  111 (181)
Q Consensus        66 -------~~l~~--~~~d~~v~i~d~~~------------------------~~~~~v~~~~~s~~~~~l~~~~~d~~-i  111 (181)
                             ..+++  |+.||.|++||+.+                        +|...|.+++|+|+|++|++++.|++ |
T Consensus       141 ~~~~~s~~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~v  220 (355)
T 3vu4_A          141 GVCEFSNGLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTII  220 (355)
T ss_dssp             EEEEEETTEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSEE
T ss_pred             ceEEEEccEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCEE
Confidence                   23444  57899999999864                        36678999999999999999999998 9


Q ss_pred             EEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        112 RVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       112 ~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      ++||+++++.+..+.   |...|++++|+|+|++|++++.|+.|++|++..+
T Consensus       221 ~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~  272 (355)
T 3vu4_A          221 RVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFND  272 (355)
T ss_dssp             EEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCC
T ss_pred             EEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCC
Confidence            999999999888886   8889999999999999999999999999999654

>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A

Probab=99.91  E-value=3.1e-22  Score=161.86  Aligned_cols=161  Identities=14%  Similarity=0.216  Sum_probs=140.8

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC-EEEEeeCCCcEEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQS----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH-WIASGALDGIINI   79 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~-~l~~~~~d~~v~i   79 (181)
                      ..+..+...+.+++|+|+|++|++++.+    +.|++||  .++....+..+...+.+++|+|+++ .+++++.|+.+++
T Consensus       110 ~~~~~~~~~v~~~~~s~~~~~l~~~~~~~~~~~~v~~~d--~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~v~v  187 (615)
T 1pgu_A          110 SEFQVLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWD--SGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVF  187 (615)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETT--TCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEE
T ss_pred             chhhcccccEEEEEEeCCCCEEEEeccCCCCccEEEEEE--CCCcceeeecCCccEEEEEECCCCCcEEEEEeCCCcEEE
Confidence            3455566778999999999999999987    6888888  5677777777888888999999998 7999999999999


Q ss_pred             EeCCC--------CCcc---cEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeee-----ecCCcEEEEEEccCCCE
Q psy10953         80 FDANT--------GHSS---WVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTF-----KHADQVWCVCVAPDGDK  142 (181)
Q Consensus        80 ~d~~~--------~~~~---~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~v~~~~~sp~g~~  142 (181)
                      ||+.+        +|..   .|.+++|+|+ ++++++++.|+.|++||+.+++.+..+     .|...|.+++|+ ++++
T Consensus       188 wd~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~  266 (615)
T 1pgu_A          188 YQGPPFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQK  266 (615)
T ss_dssp             EETTTBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSE
T ss_pred             EeCCCcceeeeecccCCCCceEEEEEECCCCCCEEEEEeCCCeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCE
Confidence            99864        4666   8999999999 999999999999999999999888887     678899999999 9999


Q ss_pred             EEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        143 FVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +++++.|+.|++|++.+++.+.....
T Consensus       267 l~~~~~d~~i~~wd~~~~~~~~~~~~  292 (615)
T 1pgu_A          267 FATVGADATIRVWDVTTSKCVQKWTL  292 (615)
T ss_dssp             EEEEETTSEEEEEETTTTEEEEEEEC
T ss_pred             EEEEcCCCcEEEEECCCCcEEEEEcC
Confidence            99999999999999998877654443

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=99.91  E-value=3.4e-22  Score=157.46  Aligned_cols=154  Identities=20%  Similarity=0.303  Sum_probs=134.6

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT--   84 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--   84 (181)
                      +..+...+.+  ++++++++++++.|++|++||+++++....+..+...+.+++|+|+++++++++.|+.+++||+.+  
T Consensus       266 ~~~~~~~v~~--~~~~~~~l~~~~~d~~i~vwd~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~sg~~dg~i~vwd~~~~~  343 (464)
T 3v7d_B          266 LRGHMASVRT--VSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGE  343 (464)
T ss_dssp             ECCCSSCEEE--EEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTTE
T ss_pred             ccCccceEEE--EcCCCCEEEEEeCCCeEEEEECCCCcEEEEecCCCCCEEEEEEcCCCCEEEEEeCCCcEEEEECCCCc
Confidence            3344444444  478999999999999999999999999888888888888999999999999999999999999974  


Q ss_pred             ------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 ------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 ------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                            +|...|.+++|+  ++++++++.|+.|++||+.+........+...+..++|+|+++++++++ |+.|++|++.
T Consensus       344 ~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~v~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-dg~i~iwd~~  420 (464)
T 3v7d_B          344 LMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLR  420 (464)
T ss_dssp             EEEEECCCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEECTTCCCEEEEEECSSEEEEEE-TTEEEEEETT
T ss_pred             EEEEEeCCCCcEEEEEEc--CCEEEEEeCCCcEEEEECCCCceeeeecCCCCccEEEEEeCCCEEEEec-CCeEEEEECC
Confidence                  477789999987  5899999999999999999988777777777888899999999999998 8999999999


Q ss_pred             CCeeEEE
Q psy10953        159 PEEEVEV  165 (181)
Q Consensus       159 ~~~~~~~  165 (181)
                      +++.+..
T Consensus       421 ~g~~~~~  427 (464)
T 3v7d_B          421 SGKLVHA  427 (464)
T ss_dssp             TCCEEES
T ss_pred             CCcEEeh
Confidence            9888763

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=4.6e-21  Score=147.68  Aligned_cols=154  Identities=19%  Similarity=0.280  Sum_probs=129.4

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCC-----
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTG-----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~-----   85 (181)
                      .+.+++|+|+|+++ ++++.|++|++||+.+++....+..+. .+.+++|+|++++|++ +..++.|++||+.++     
T Consensus        33 ~~~~~~~s~dg~~l~~~~~~d~~i~v~d~~~~~~~~~~~~~~-~v~~~~~spdg~~l~~~~~~~~~v~v~d~~~~~~~~~  111 (391)
T 1l0q_A           33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGS-SPQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (391)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSS-SEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CcceEEECCCCCEEEEECCCCCeEEEEECCCCeEEEEEECCC-CccceEECCCCCEEEEEECCCCEEEEEECCCCeEEEE
Confidence            47899999999987 677789999999999999988877655 5679999999998765 556799999999764     


Q ss_pred             --CcccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE-EEEcCCCcEEEEeCCCCe
Q psy10953         86 --HSSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF-VSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~i~~~~~~~  161 (181)
                        +...+..++|+|+++.+ ++++.++.|++||+.+++.+..+.....+.+++|+|+++.+ ++++.++.|++|++.+++
T Consensus       112 ~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~  191 (391)
T 1l0q_A          112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (391)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             EeCCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCCcceEEECCCCCEEEEEeCCCCEEEEEECCCCe
Confidence              23457899999999976 68888999999999999888887766778999999999987 567788999999998887


Q ss_pred             eEEEcC
Q psy10953        162 EVEVNG  167 (181)
Q Consensus       162 ~~~~~~  167 (181)
                      .+....
T Consensus       192 ~~~~~~  197 (391)
T 1l0q_A          192 VIDTVK  197 (391)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            665443

>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3

Probab=99.90  E-value=6.4e-21  Score=146.89  Aligned_cols=156  Identities=15%  Similarity=0.133  Sum_probs=131.2

Q ss_pred             eeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEE-EEeeCCCcEEEEeCCCC----
Q psy10953         12 VDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI-ASGALDGIINIFDANTG----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~~~~----   85 (181)
                      ..+.+++|+|+|+++ ++++.|+.|++||+.+++....+..+.. +..++|+|+++.+ ++++.++.+++||+.++    
T Consensus       116 ~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~  194 (391)
T 1l0q_A          116 KSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRS-PKGIAVTPDGTKVYVANFDSMSISVIDTVTNSVID  194 (391)
T ss_dssp             SSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEecCCC-cceEEECCCCCEEEEEeCCCCEEEEEECCCCeEEE
Confidence            357899999999987 6888899999999999998887766544 4689999999887 56778999999999764    


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEe---CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE-EEEcCCCcEEEEeCC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISAS---ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF-VSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~---~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~i~~~~  158 (181)
                         +...+..++|+|+++++++++   .++.|++||+.+++.+..+.....+.+++|+|+|+++ ++++.|+.|++|++.
T Consensus       195 ~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~s~~~d~~v~v~d~~  274 (391)
T 1l0q_A          195 TVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFXNTVSVIDTA  274 (391)
T ss_dssp             EEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             EEecCCCccceEECCCCCEEEEEecCcCCCcEEEEECCCCeEEEEEecCCCccEEEEccCCCEEEEEcCCCCEEEEEECC
Confidence               334678899999999888887   6899999999998888887766678999999999987 566789999999999


Q ss_pred             CCeeEEEcCC
Q psy10953        159 PEEEVEVNGG  168 (181)
Q Consensus       159 ~~~~~~~~~~  168 (181)
                      +++.+.....
T Consensus       275 ~~~~~~~~~~  284 (391)
T 1l0q_A          275 TNTITATMAV  284 (391)
T ss_dssp             TTEEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            8877655443

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.90  E-value=4.9e-21  Score=150.22  Aligned_cols=158  Identities=21%  Similarity=0.384  Sum_probs=136.0

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+..+...+.+++|  +++++++|+.|++|++||+.+++....+..+...+.+++|+  +..+++++.|+.+++||+
T Consensus       165 ~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~~~~~h~~~v~~l~~~--~~~l~s~s~dg~i~vwd~  240 (435)
T 1p22_A          165 CKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN--NGMMVTCSKDRSIAVWDM  240 (435)
T ss_dssp             EEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEEEECCCCSCEEEEECC--TTEEEEEETTSCEEEEEC
T ss_pred             EEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCcEEEEEEc--CCEEEEeeCCCcEEEEeC
Confidence            34556667777888888  88999999999999999999999998888888888888886  458999999999999998


Q ss_pred             CC-----------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         83 NT-----------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        83 ~~-----------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      .+           +|...|.+++|  +++++++++.|+.|++||+.+++.+..+. |...+.++++  +++++++++.|+
T Consensus       241 ~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~g~~dg  316 (435)
T 1p22_A          241 ASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDN  316 (435)
T ss_dssp             SSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTS
T ss_pred             CCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEECCcCcEEEEEcCCCCcEEEEEe--CCCEEEEEeCCC
Confidence            64           35567888888  78899999999999999999998888776 7788998888  578999999999


Q ss_pred             cEEEEeCCCCeeEEEcCC
Q psy10953        151 AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~~  168 (181)
                      .|++|++.++..+....+
T Consensus       317 ~i~iwd~~~~~~~~~~~~  334 (435)
T 1p22_A          317 TIRLWDIECGACLRVLEG  334 (435)
T ss_dssp             CEEEEETTTCCEEEEECC
T ss_pred             eEEEEECCCCCEEEEEeC
Confidence            999999998887766554

>4gq1_A NUP37; propeller, transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4gq2_P 4fhl_A 4fhm_A 4fhn_A

Probab=99.89  E-value=8.4e-23  Score=158.73  Aligned_cols=148  Identities=14%  Similarity=0.095  Sum_probs=114.0

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-----EecCCceEEEEEECC--------CCCEEEEeeCCCcEEEEeCC
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQI-----FDTRGKFTLSIAYST--------DGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~-----~~~~~~~~~~~~~s~--------d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+++++++|++++.|++|++||+++++....     +..|...+.+++|+|        |+++|++++.|++|++||+.
T Consensus        95 ~~~~~~~~~las~~~d~~v~lw~~~~~~~~~~~~~~~~~gH~~~v~~v~~~p~~~~~~~~d~~~las~s~D~tv~~Wd~~  174 (393)
T 4gq1_A           95 NSSPVYSLFLACVCQDNTVRLIITKNETIITQHVLGGKSGHHNFVNDIDIADVYSADNRLAEQVIASVGDDCTLIIWRLT  174 (393)
T ss_dssp             --CCEEEEEEEEEETTSCEEEEEEETTEEEEEEEECTTTSCSSCEEEEEEEEEECTTCSEEEEEEEEEETTSEEEEEEEE
T ss_pred             eecCCCCCEEEEEeCCCcEEEEECCCCccceeeeecccCCCCCceEEEEEccccccccCCCCCEEEEEECCCeEEEEECC
Confidence            44556778899999999999999998865432     345677889999997        88999999999999999986


Q ss_pred             C--------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeee--------------------------ecC
Q psy10953         84 T--------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTF--------------------------KHA  128 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~--------------------------~~~  128 (181)
                      +        +|...+.+++|+|++. +|++++.|+.|++||+++++.....                          .|.
T Consensus       175 ~~~~~~~~~~~~~~v~~v~~~p~~~~~l~~~~~d~~v~~wd~~t~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~  254 (393)
T 4gq1_A          175 DEGPILAGYPLSSPGISVQFRPSNPNQLIVGERNGNIRIFDWTLNLSAEENSQTELVKNPWLLTLNTLPLVNTCHSSGIA  254 (393)
T ss_dssp             TTEEEEEEEECSSCEEEEEEETTEEEEEEEEETTSEEEEEETTCCC----------CSCCCSEEEESGGGC------CCS
T ss_pred             CCceeeeecCCCCCcEEEEECCCCCceEEecCCCCEEEEEECCCCcccccccccCCcccceEEecccccceeeeeccccc
Confidence            4        3667899999999874 8999999999999999875432211                          244


Q ss_pred             CcEEEEEEc-cCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        129 DQVWCVCVA-PDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       129 ~~v~~~~~s-p~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ..+.+++|+ |+|+.+++++.|+.+++|++..+....
T Consensus       255 ~~v~~v~~~~~dg~~l~s~s~d~~i~vwd~~~~~~~~  291 (393)
T 4gq1_A          255 SSLANVRWIGSDGSGILAMCKSGAWLRWNLFANNDYN  291 (393)
T ss_dssp             SSCSEEEEETTTTCEEEEECTTSEEEEEEC-------
T ss_pred             ccceeeeeecCCCCEEEEEeCCCCEEEEECccCCCCc
Confidence            567788876 899999999999999999997765443

>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}

Probab=99.89  E-value=3.6e-21  Score=143.95  Aligned_cols=143  Identities=22%  Similarity=0.393  Sum_probs=119.2

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDANTG------   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~------   85 (181)
                      +..|+||+++ +|++| .|++|++||+.+++.++.+..  +...+.+++|+|++++|++|+.|+.|++||+.++      
T Consensus        28 ~~~l~WS~~~-~lAvg-~D~tV~iWd~~tg~~~~~~~~~~~~~~V~~v~~~~~~~~l~sgs~Dg~v~iw~~~~~~~~~~~  105 (318)
T 4ggc_A           28 LNLVDWSSGN-VLAVA-LDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNM  105 (318)
T ss_dssp             CBCEEECTTS-EEEEE-ETTEEEEEETTTCCEEEEEECCSTTCCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEE
T ss_pred             ceEEEECCCC-EEEEE-eCCEEEEEECCCCCEEEEEEecCCCCeEEEEEECCCCCEEEEEECCCcEEEeecCCceeEEEe
Confidence            3568999886 67666 499999999999999887764  4556889999999999999999999999999764      


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce-eeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-MHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~-~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                        |...+.+  ++++++.+++++.++.+++|+...... +..+ .|...+..++++++++++++++.|+.|++|++.++
T Consensus       106 ~~h~~~~~~--~~~~~~~l~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~d~~i~iwd~~~~  182 (318)
T 4ggc_A          106 TSHSARVGS--LSWNSYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPG  182 (318)
T ss_dssp             ECCSSCEEE--EEEETTEEEEEETTSEEEEEETTSSSCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEESSCB
T ss_pred             cCccceEEE--eecCCCEEEEEecCCceEeeecCCCceeEEEEcCccCceEEEEEcCCCCEEEEEecCcceeEEECCCC
Confidence              4444544  566778999999999999999877543 3333 37788999999999999999999999999999765

>3vu4_A KMHSV2; beta-propeller fold, protein transport; 2.60A {Kluyveromyces marxianus} PDB: 4av9_A 4av8_A 4exv_A

Probab=99.88  E-value=2.2e-21  Score=148.79  Aligned_cols=143  Identities=13%  Similarity=0.212  Sum_probs=113.3

Q ss_pred             EEEEcCCCCEEEE--EeCCCcEEEEeCCCCc----------------EEEEEecCCceEEEEEECCCCCEEEEeeCCCc-
Q psy10953         16 NVVFSPDDKYVLS--GSQSGKINLYGVETGK----------------LEQIFDTRGKFTLSIAYSTDGHWIASGALDGI-   76 (181)
Q Consensus        16 ~~~~s~~g~~l~~--~~~d~~i~~~d~~~~~----------------~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~-   76 (181)
                      .+++++  +++++  |+.||+|++||+.+++                ....+..|...+.+++|+|+|++|++++.|++ 
T Consensus       142 ~~~~s~--~~la~~sg~~~g~v~iwd~~~~~~~~~~~~~~~~~~~~p~~~~~~~h~~~v~~~~~s~~g~~l~s~s~d~~~  219 (355)
T 3vu4_A          142 VCEFSN--GLLVYSNEFNLGQIHITKLQSSGSATTQDQGVQQKAILGKGVLIKAHTNPIKMVRLNRKSDMVATCSQDGTI  219 (355)
T ss_dssp             EEEEET--TEEEEEESSCTTCEEEEECCC------------------CCEEECCCSSCEEEEEECTTSSEEEEEETTCSE
T ss_pred             eEEEEc--cEEEEeCCCcCcEEEEEECCCCCccccccccccccccCcccEEEEccCCceEEEEECCCCCEEEEEeCCCCE
Confidence            455666  55655  5889999999998765                14566677888899999999999999999998 


Q ss_pred             EEEEeCCC---------C-CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee--------------------eee
Q psy10953         77 INIFDANT---------G-HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH--------------------TFK  126 (181)
Q Consensus        77 v~i~d~~~---------~-~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~--------------------~~~  126 (181)
                      |++||+++         + |...|.+++|+|+|++|++++.|+.|++||+.......                    .+.
T Consensus       220 v~iwd~~~~~~~~~~~~g~h~~~v~~~~~s~~~~~l~s~s~d~~v~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (355)
T 3vu4_A          220 IRVFKTEDGVLVREFRRGLDRADVVDMKWSTDGSKLAVVSDKWTLHVFEIFNDQDNKRHALKGWINMKYFQSEWSLCNFK  299 (355)
T ss_dssp             EEEEETTTCCEEEEEECTTCCSCEEEEEECTTSCEEEEEETTCEEEEEESSCCSCCCSEETTTTEECCCCCCSSCSEEEE
T ss_pred             EEEEECCCCcEEEEEEcCCCCCcEEEEEECCCCCEEEEEECCCEEEEEEccCCCCcccccccceeeccccccccceeEEE
Confidence            99999874         3 77789999999999999999999999999997542110                    010


Q ss_pred             ----cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953        127 ----HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       127 ----~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                          .......++|+|+|+.+++++.|+.+++|++..+
T Consensus       300 ~~~~~~~~~~~~a~~~d~~~l~~~~~dg~~~~~~~~~~  337 (355)
T 3vu4_A          300 LSVDKHVRGCKIAWISESSLVVVWPHTRMIETFKVVFD  337 (355)
T ss_dssp             CCCCTTCCCCEEEESSSSEEEEEETTTTEEEEEEEEEE
T ss_pred             eccCCCCCceEEEEeCCCCEEEEEeCCCeEEEEEEEcC
Confidence                0112356899999999999999999999998543

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1.8e-20  Score=147.14  Aligned_cols=158  Identities=21%  Similarity=0.404  Sum_probs=134.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+..+..+...+++++|+  ++++++|+.|++|++||+.+++....+..+...+.++.++  ++.+++++.|+.+++||+
T Consensus       151 ~~~~~~~h~~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~~~~~~~~h~~~v~~~~~~--~~~l~s~s~dg~i~~wd~  226 (445)
T 2ovr_B          151 CLRTLVGHTGGVWSSQMR--DNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLRVWDI  226 (445)
T ss_dssp             EEEECCCCSSCEEEEEEE--TTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEEEEES
T ss_pred             EEEEEcCCCCCEEEEEec--CCEEEEEeCCCeEEEEECCcCcEEEEECCCCCcEEEEEec--CCEEEEEeCCCEEEEEEC
Confidence            345566677788999997  6799999999999999999999888888787778788884  677999999999999998


Q ss_pred             CC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         83 NT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        83 ~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      .+        +|...+.+++|  +++++++++.|+.|++||+.+++.+..+. |...+.++++  +++++++++.|+.|+
T Consensus       227 ~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~iwd~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~  302 (445)
T 2ovr_B          227 ETGQCLHVLMGHVAAVRCVQY--DGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIR  302 (445)
T ss_dssp             SSCCEEEEEECCSSCEEEEEE--CSSCEEEEETTSCEEEEEGGGTEEEEEECCCSSCEEEEEE--CSSEEEEEETTSCEE
T ss_pred             CCCcEEEEEcCCcccEEEEEE--CCCEEEEEcCCCEEEEEECCCCcEeEEecCCCCceEEEEE--CCCEEEEEeCCCeEE
Confidence            75        35677888888  78899999999999999999888887776 7788999988  888999999999999


Q ss_pred             EEeCCCCeeEEEcCC
Q psy10953        154 MYSYKPEEEVEVNGG  168 (181)
Q Consensus       154 i~~~~~~~~~~~~~~  168 (181)
                      +|++.+++.+....+
T Consensus       303 i~d~~~~~~~~~~~~  317 (445)
T 2ovr_B          303 VWDVETGNCIHTLTG  317 (445)
T ss_dssp             EEETTTCCEEEEECC
T ss_pred             EEECCCCCEEEEEcC
Confidence            999988877765544

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=99.88  E-value=1.6e-20  Score=147.32  Aligned_cols=151  Identities=23%  Similarity=0.424  Sum_probs=126.8

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----   84 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----   84 (181)
                      +...+.++++  +++++++|+.|++|++||+.+++....+..|...+.+++|  +++.|++|+.||.|++||+.+     
T Consensus       132 ~~~~v~~~~~--d~~~l~~g~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~--~~~~l~sg~~dg~i~vwd~~~~~~~~  207 (435)
T 1p22_A          132 TSKGVYCLQY--DDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLN  207 (435)
T ss_dssp             SCCCEEEEEC--CSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESSSCCEEE
T ss_pred             CCCcEEEEEE--CCCEEEEEeCCCeEEEEeCCCCeEEEEEcCCCCcEEEEEE--CCCEEEEEcCCCeEEEEECCCCcEEE
Confidence            3344666655  8999999999999999999999999888888888878887  789999999999999999875     


Q ss_pred             ---CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCcee---eee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         85 ---GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENM---HTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        85 ---~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~---~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                         +|...|.+++|++  ..+++++.|+.|++||+.++...   ... .|...|.++++  +++++++++.|+.|++|++
T Consensus       208 ~~~~h~~~v~~l~~~~--~~l~s~s~dg~i~vwd~~~~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~~~dg~i~vwd~  283 (435)
T 1p22_A          208 TLIHHCEAVLHLRFNN--GMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWNT  283 (435)
T ss_dssp             EECCCCSCEEEEECCT--TEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEEEE--ETTEEEEEETTSEEEEEET
T ss_pred             EEcCCCCcEEEEEEcC--CEEEEeeCCCcEEEEeCCCCCCceeeeEecCCCCcEEEEEe--CCCEEEEEeCCCeEEEEEC
Confidence               3667889998864  59999999999999999887654   223 37788999988  7889999999999999999


Q ss_pred             CCCeeEEEcCC
Q psy10953        158 KPEEEVEVNGG  168 (181)
Q Consensus       158 ~~~~~~~~~~~  168 (181)
                      .+++.+....+
T Consensus       284 ~~~~~~~~~~~  294 (435)
T 1p22_A          284 STCEFVRTLNG  294 (435)
T ss_dssp             TTCCEEEEEEC
T ss_pred             CcCcEEEEEcC
Confidence            98877655443

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.88  E-value=1.8e-20  Score=146.70  Aligned_cols=162  Identities=15%  Similarity=0.133  Sum_probs=126.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEE-EeeCCC--cE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSG---KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDG--II   77 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~--~v   77 (181)
                      +..+..+...+.+++|||||++|++++.++   .|++||+.+++...+. .+...+.+++|+|||++|+ +++.++  .+
T Consensus       171 ~~~l~~~~~~v~~~~~Spdg~~la~~s~~~~~~~i~~~d~~tg~~~~l~-~~~~~~~~~~~spdg~~la~~~~~~g~~~i  249 (415)
T 2hqs_A          171 QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPRHNGAPAFSPDGSKLAFALSKTGSLNL  249 (415)
T ss_dssp             CEEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEE-CCSSCEEEEEECTTSSEEEEEECTTSSCEE
T ss_pred             CEEEeCCCCcceeeEEcCCCCEEEEEEecCCCcEEEEEECCCCcEEEee-cCCCcccCEEEcCCCCEEEEEEecCCCceE
Confidence            344555566789999999999999999875   9999999999876544 3445567899999999888 555555  49


Q ss_pred             EEEeCCCC-------CcccEEEEEEcCCCCEEEEEeC-CC--cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953         78 NIFDANTG-------HSSWVLSTAFTRDGKFFISASA-DH--TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        78 ~i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~-d~--~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      ++||+.++       +...+..++|+|+|++|++++. ++  .|++||+.+++......+...+.+++|+|+|++|+.++
T Consensus       250 ~~~d~~~~~~~~l~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~  329 (415)
T 2hqs_A          250 YVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVS  329 (415)
T ss_dssp             EEEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEE
T ss_pred             EEEECCCCCEEeCcCCCCcccceEECCCCCEEEEEECCCCCcEEEEEECCCCCEEEEecCCCcccCeEECCCCCEEEEEE
Confidence            99998753       4556889999999998888776 44  68888988776443334566788999999999998888


Q ss_pred             CC---CcEEEEeCCCCeeEEEc
Q psy10953        148 ED---KAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       148 ~d---~~v~i~~~~~~~~~~~~  166 (181)
                      .+   ..|++|++.+++...+.
T Consensus       330 ~~~g~~~i~~~d~~~~~~~~l~  351 (415)
T 2hqs_A          330 SNGGQQHIAKQDLATGGVQVLS  351 (415)
T ss_dssp             ECSSCEEEEEEETTTCCEEECC
T ss_pred             CcCCceEEEEEECCCCCEEEec
Confidence            64   58999999887665443

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=99.88  E-value=1.4e-20  Score=147.85  Aligned_cols=151  Identities=22%  Similarity=0.389  Sum_probs=129.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +..+..+...+.+++|  +++++++++.|++|++||+++++....+..+...+.++.+  +++++++++.|+.+++||+.
T Consensus       272 ~~~~~~~~~~v~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~vwd~~  347 (445)
T 2ovr_B          272 LHTLQGHTNRVYSLQF--DGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIWDIK  347 (445)
T ss_dssp             EEEECCCSSCEEEEEE--CSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEEETT
T ss_pred             eEEecCCCCceEEEEE--CCCEEEEEeCCCeEEEEECCCCCEEEEEcCCcccEEEEEE--eCCEEEEEeCCCeEEEEECC
Confidence            4555666777888888  8899999999999999999999988888777776666665  57899999999999999986


Q ss_pred             CC-----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee------ecCCcEEEEEEccCCCEEEEE
Q psy10953         84 TG-----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF------KHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        84 ~~-----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~------~~~~~v~~~~~sp~g~~l~~~  146 (181)
                      ++           |...|.+++|+  ++++++++.|+.|++||+.+++.+..+      .+...|++++|+|++.+++++
T Consensus       348 ~~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~~~dg~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~la~~  425 (445)
T 2ovr_B          348 TGQCLQTLQGPNKHQSAVTCLQFN--KNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVG  425 (445)
T ss_dssp             TCCEEEEECSTTSCSSCEEEEEEC--SSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEE
T ss_pred             CCcEEEEEccCCCCCCCEEEEEEC--CCEEEEEeCCCeEEEEECCCCceeeeeeccccCCCCceEEEEEecCCEEEEEEc
Confidence            42           56678888885  689999999999999999999887776      366789999999999999999


Q ss_pred             cCCCc----EEEEeCCCC
Q psy10953        147 GEDKA----VHMYSYKPE  160 (181)
Q Consensus       147 ~~d~~----v~i~~~~~~  160 (181)
                      +.||.    +.+||+...
T Consensus       426 ~~dg~~~~~l~v~df~~~  443 (445)
T 2ovr_B          426 SRNGTEETKLLVLDFDVD  443 (445)
T ss_dssp             CSSSSSCCEEEEEECCCC
T ss_pred             ccCCCCccEEEEEECCCC
Confidence            99997    999999754

>2w18_A PALB2, fancn, partner and localizer of BRCA2; fanconi anemia, homologous recomination, polymorphism, phosphoprotein, beta-propeller, WD40, nucleus; 1.90A {Homo sapiens} PDB: 3eu7_A

Probab=99.88  E-value=5.7e-21  Score=145.05  Aligned_cols=158  Identities=11%  Similarity=0.057  Sum_probs=114.1

Q ss_pred             CeeeEEEEEEcCC----CCEEEEEeC--------------------CCcEEEEeC-CCCcEEEEEecCCceEEEEEECC-
Q psy10953         10 GPVDMWNVVFSPD----DKYVLSGSQ--------------------SGKINLYGV-ETGKLEQIFDTRGKFTLSIAYST-   63 (181)
Q Consensus        10 ~~~~~~~~~~s~~----g~~l~~~~~--------------------d~~i~~~d~-~~~~~~~~~~~~~~~~~~~~~s~-   63 (181)
                      +-..++.++|+||    ++++++++.                    |+.|++|++ .+++.+..+..++..+..++|++ 
T Consensus       110 ~~~~v~sla~spd~~~~~~~l~s~g~~~~v~~l~~g~lv~ss~~g~d~~V~~~~~s~dG~~~~s~~~~~~~v~~l~fs~~  189 (356)
T 2w18_A          110 EIREIRALFCSSDDESEKQVLLKSGNIKAVLGLTKRRLVSSSGTLSDQQVEVMTFAEDGGGKENQFLMPPEETILTFAEV  189 (356)
T ss_dssp             SEEEEEEECC------CCEEEEEEEEEEEEEEETTTEEEEEESSSTTCEEEEEEECTTSCEEEEEEECCCSSCEEEEEEE
T ss_pred             cccceEEEEECCCccccccEEEeCCCeEEEEecCCCcEEEecccCCCCcEEEEEECCCCceeeeeccCCCceeeEEeecc
Confidence            3446788888999    888877653                    778888888 45776666556665556677777 


Q ss_pred             --CCCEEEEeeCCCcEEEEeCCCCCc-----------ccEEEEEEcCCCCEE------------EEEeCCCcEEEEecCC
Q psy10953         64 --DGHWIASGALDGIINIFDANTGHS-----------SWVLSTAFTRDGKFF------------ISASADHTVRVWNFAR  118 (181)
Q Consensus        64 --d~~~l~~~~~d~~v~i~d~~~~~~-----------~~v~~~~~s~~~~~l------------~~~~~d~~i~v~d~~~  118 (181)
                        ++..|++++.|++|++||++++..           ..+.+++|+|+|+++            ++++.|++|++||..+
T Consensus       190 ~g~~~~LaSgS~D~TIkIWDl~TGk~l~tL~g~~~~v~~v~~vafSpdG~~lvs~s~~~~~w~laSGs~D~tIklWd~~t  269 (356)
T 2w18_A          190 QGMQEALLGTTIMNNIVIWNLKTGQLLKKMHIDDSYQASVCHKAYSEMGLLFIVLSHPCAKESESLRSPVFQLIVINPKT  269 (356)
T ss_dssp             ETSTTEEEEEETTSEEEEEETTTCCEEEEEECCC---CCCEEEEEEETTEEEEEEC------------CCEEEEEEETTT
T ss_pred             CCCCceEEEecCCCcEEEEECCCCcEEEEEcCCCcceeeeEEEEECCCCCEEEEeccCCCcceeeccCCCcEEEEEECCC
Confidence              678899999999999999987531           245677899999976            5677899999999999


Q ss_pred             Cceeeeee------cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        119 RENMHTFK------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       119 ~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      ++.+..+.      |...+.+.  +.++..+++++.|++|+|||+.+++.+..+.++
T Consensus       270 gk~l~v~~~~~p~Gh~~~~lsg--~~sg~~lASgS~DgTIkIWDl~tGk~l~tL~gH  324 (356)
T 2w18_A          270 TLSVGVMLYCLPPGQAGRFLEG--DVKDHCAAAILTSGTIAIWDLLLGQCTALLPPV  324 (356)
T ss_dssp             TEEEEEEEECCCTTCCCCEEEE--EEETTEEEEEETTSCEEEEETTTCSEEEEECCC
T ss_pred             CEEEEEEEeeccCCCcceeEcc--ccCCCEEEEEcCCCcEEEEECCCCcEEEEecCC
Confidence            88765441      33334333  334888999999999999999999888776543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.88  E-value=2e-20  Score=145.86  Aligned_cols=158  Identities=13%  Similarity=0.156  Sum_probs=133.6

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCC--
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTG--   85 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~--   85 (181)
                      .+...+.+++|+|+++++++++.|+.|++||+++++....+..+...+.+++|+|+++.+++ +..|+.+++||+.++  
T Consensus       167 ~~~~~v~~~~~~~~~~~~~s~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~  246 (433)
T 3bws_A          167 KKLGFVETISIPEHNELWVSQMQANAVHVFDLKTLAYKATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLE  246 (433)
T ss_dssp             TTCCEEEEEEEGGGTEEEEEEGGGTEEEEEETTTCCEEEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEE
T ss_pred             ccCCceeEEEEcCCCEEEEEECCCCEEEEEECCCceEEEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcE
Confidence            34457899999999999999999999999999999988888777777889999999998855 557999999998754  


Q ss_pred             -----CcccEEEEEEcCCCCEEEEEe--------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE-EEEcCCCc
Q psy10953         86 -----HSSWVLSTAFTRDGKFFISAS--------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF-VSVGEDKA  151 (181)
Q Consensus        86 -----~~~~v~~~~~s~~~~~l~~~~--------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~  151 (181)
                           ....+..++|+|+|+.+++++        .|+.|++||+.+++......+...+.+++|+|+++.+ ++++.++.
T Consensus       247 ~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~  326 (433)
T 3bws_A          247 IRKTDKIGLPRGLLLSKDGKELYIAQFSASNQESGGGRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSK  326 (433)
T ss_dssp             EEECCCCSEEEEEEECTTSSEEEEEEEESCTTCSCCEEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTE
T ss_pred             EEEecCCCCceEEEEcCCCCEEEEEECCCCccccCCCeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCE
Confidence                 234578999999999888888        4889999999998887777777789999999999865 55688999


Q ss_pred             EEEEeCCCCeeEEEc
Q psy10953        152 VHMYSYKPEEEVEVN  166 (181)
Q Consensus       152 v~i~~~~~~~~~~~~  166 (181)
                      |++|++.+++.+...
T Consensus       327 v~v~d~~~~~~~~~~  341 (433)
T 3bws_A          327 IEVYDLKEKKVQKSI  341 (433)
T ss_dssp             EEEEETTTTEEEEEE
T ss_pred             EEEEECCCCcEEEEe
Confidence            999999887665543

>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}

Probab=99.87  E-value=6.3e-20  Score=143.10  Aligned_cols=164  Identities=13%  Similarity=0.117  Sum_probs=134.4

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee--------CC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA--------LD   74 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~--------~d   74 (181)
                      +..+..+...+.+++|+|++++++ +++.|++|++||+++++....+..+.. +.+++|+|+++.+++++        .|
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~~~~~d  282 (433)
T 3bws_A          204 KATVDLTGKWSKILLYDPIRDLVYCSNWISEDISVIDRKTKLEIRKTDKIGL-PRGLLLSKDGKELYIAQFSASNQESGG  282 (433)
T ss_dssp             EEEEECSSSSEEEEEEETTTTEEEEEETTTTEEEEEETTTTEEEEECCCCSE-EEEEEECTTSSEEEEEEEESCTTCSCC
T ss_pred             EEEEcCCCCCeeEEEEcCCCCEEEEEecCCCcEEEEECCCCcEEEEecCCCC-ceEEEEcCCCCEEEEEECCCCccccCC
Confidence            344445566688999999999885 455799999999999988877765544 66899999999998887        48


Q ss_pred             CcEEEEeCCCCC-------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEE
Q psy10953         75 GIINIFDANTGH-------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        75 ~~v~i~d~~~~~-------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~  146 (181)
                      +.+++||+.++.       ...+..++|+|+++ ++++++.++.|++||+.+++....+.+...+.+++|+|+|++++++
T Consensus       283 g~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~  362 (433)
T 3bws_A          283 GRLGIYSMDKEKLIDTIGPPGNKRHIVSGNTENKIYVSDMCCSKIEVYDLKEKKVQKSIPVFDKPNTIALSPDGKYLYVS  362 (433)
T ss_dssp             EEEEEEETTTTEEEEEEEEEECEEEEEECSSTTEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEE
T ss_pred             CeEEEEECCCCcEEeeccCCCCcceEEECCCCCEEEEEecCCCEEEEEECCCCcEEEEecCCCCCCeEEEcCCCCEEEEE
Confidence            899999997652       34677899999997 5566788999999999998888888888889999999999998888


Q ss_pred             cC---------------CCcEEEEeCCCCeeEEEcCC
Q psy10953        147 GE---------------DKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       147 ~~---------------d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +.               |+.|++|+..+++.+....+
T Consensus       363 ~~~~~~~~~~~~~~g~~dg~v~~~d~~~~~~~~~~~~  399 (433)
T 3bws_A          363 CRGPNHPTEGYLKKGLVLGKVYVIDTTTDTVKEFWEA  399 (433)
T ss_dssp             ECCCCCTTTCTTSCCSSCCEEEEEETTTTEEEEEEEC
T ss_pred             ecCCCccccccccccccceEEEEEECCCCcEEEEecC
Confidence            76               46999999998877665444

>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A

Probab=99.87  E-value=3.4e-21  Score=148.42  Aligned_cols=149  Identities=12%  Similarity=0.162  Sum_probs=111.2

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCcEE--------E--EEecCCceEEEEEECCCCCEEEEe---
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSG-------KINLYGVETGKLE--------Q--IFDTRGKFTLSIAYSTDGHWIASG---   71 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~-------~i~~~d~~~~~~~--------~--~~~~~~~~~~~~~~s~d~~~l~~~---   71 (181)
                      .++++++|+|||++|++|+.+.       +|++|++..+...        .  .+..+...+.+++  +++..+++|   
T Consensus        15 ~PV~sv~fs~dg~~l~sGGg~~~~sGi~N~i~~w~~~~~~~~~~~~~~~~~~~~l~~~~~~v~s~~--~~~~~~~~g~~~   92 (365)
T 4h5i_A           15 YPAYGAKFLNNDTLLVAGGGGEGNNGIPNKLTVLRVDPTKDTEKEQFHILSEFALEDNDDSPTAID--ASKGIILVGCNE   92 (365)
T ss_dssp             SCEEEEEEEETTEEEEEEECCSSSSSCCEEEEEEEECTTSSSHHHHEEEEEEEECCTTSCCCCEEE--EETTEEEEECCC
T ss_pred             CCEEEEEEeCCCcEEEEECCCccccCCCCEEEEEEEcCCCcceeeeeeeeeEEEccCCCCceEEEE--eCCCEEEEEECC
Confidence            3589999999999999998654       4999998755321        1  2223444444444  456666655   


Q ss_pred             --------eCCCcEEEEeCCCC-----------------CcccEEEEEEcCCCCEEEEE--eCCCcEEEEecCCCceeee
Q psy10953         72 --------ALDGIINIFDANTG-----------------HSSWVLSTAFTRDGKFFISA--SADHTVRVWNFARRENMHT  124 (181)
Q Consensus        72 --------~~d~~v~i~d~~~~-----------------~~~~v~~~~~s~~~~~l~~~--~~d~~i~v~d~~~~~~~~~  124 (181)
                              +.|+.+++|++...                 +..++..++|||||++++++  +.|+.|++||+.+++.+..
T Consensus        93 ~~~~l~s~~~d~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~fSpDg~~la~as~~~d~~i~iwd~~~~~~~~~  172 (365)
T 4h5i_A           93 NSTKITQGKGNKHLRKFKYDKVNDQLEFLTSVDFDASTNADDYTKLVYISREGTVAAIASSKVPAIMRIIDPSDLTEKFE  172 (365)
T ss_dssp             CHHHHHHTSCCCCEEEEEEETTTTEEEEEEEECSSCCCCTTCCEEEEEECTTSSCEEEEESCSSCEEEEEETTTTEEEEE
T ss_pred             CccEEEEecCCCcEEEEEecCCCceEEEeeeeceeecCCcccCEEEEEEcCCCCEEEEEECCCCCEEEEeECCCCcEEEE
Confidence                    35778999986431                 23457889999999987654  4689999999999998888


Q ss_pred             eecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        125 FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       125 ~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      +.|...|++++|+|||+++++++.+ .+.+|+..++..+
T Consensus       173 ~~~~~~V~~v~fspdg~~l~s~s~~-~~~~~~~~~~~~~  210 (365)
T 4h5i_A          173 IETRGEVKDLHFSTDGKVVAYITGS-SLEVISTVTGSCI  210 (365)
T ss_dssp             EECSSCCCEEEECTTSSEEEEECSS-CEEEEETTTCCEE
T ss_pred             eCCCCceEEEEEccCCceEEeccce-eEEEEEeccCcce
Confidence            8888899999999999999998854 5666666665544

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=2.5e-21  Score=152.54  Aligned_cols=144  Identities=18%  Similarity=0.227  Sum_probs=117.2

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCC-----------cEE-----EEEecCCceEEEEEECCCCCEEE----Eee
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETG-----------KLE-----QIFDTRGKFTLSIAYSTDGHWIA----SGA   72 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~-----------~~~-----~~~~~~~~~~~~~~~s~d~~~l~----~~~   72 (181)
                      .+..+++++++.++++++.++ +++|+....           ...     ..+ .....+.+++|+|+|++|+    +++
T Consensus        38 ~~n~lavs~~~~~l~~~~~dg-v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~l~~spdg~~lav~~~sgs  115 (434)
T 2oit_A           38 RSSLLAVSNKYGLVFAGGASG-LQIFPTKNLLIQNKPGDDPNKIVDKVQGLLV-PMKFPIHHLALSCDNLTLSACMMSSE  115 (434)
T ss_dssp             CCBCEEEETTTTEEEEEETTE-EEEEEHHHHCCCCCTTCCTTCEEECCCCEEE-CCSSCEEEEEECTTSCEEEEEEEETT
T ss_pred             CccEEEEecCCCEEEEECCCE-EEEEEchHhhhhcccccCcccccccCccccc-cCCCcccEEEEcCCCCEEEEEEeccC
Confidence            467899999999999999887 888865311           111     011 1233477999999999999    788


Q ss_pred             CCCcEEEEeCCC-------------------CCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeee-ecCCcE
Q psy10953         73 LDGIINIFDANT-------------------GHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTF-KHADQV  131 (181)
Q Consensus        73 ~d~~v~i~d~~~-------------------~~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v  131 (181)
                      .|+.|++||+.+                   +|...|.+++|+|+ +++|++++.|++|++||++++...... .|...+
T Consensus       116 ~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~v~iwD~~~~~~~~~~~~~~~~v  195 (434)
T 2oit_A          116 YGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGSIAVLQVTETVKVCATLPSTVAV  195 (434)
T ss_dssp             TEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSCEEEEEESSSEEEEEEECGGGCE
T ss_pred             CCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCeEEEEEcCCCcceeeccCCCCce
Confidence            999999998632                   25678999999998 789999999999999999987655433 467789


Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      .+++|+|+|++|++++.|+.|++|+..
T Consensus       196 ~~v~wspdg~~lasgs~dg~v~iwd~~  222 (434)
T 2oit_A          196 TSVCWSPKGKQLAVGKQNGTVVQYLPT  222 (434)
T ss_dssp             EEEEECTTSSCEEEEETTSCEEEECTT
T ss_pred             eEEEEcCCCCEEEEEcCCCcEEEEccC
Confidence            999999999999999999999999998

>2oit_A Nucleoporin 214KDA; NH2 terminal domain of NUP214/CAN, X-RAY crystallography, beta-propeller, structure, mRNA export, NPC assembly, leukemia; HET: MES; 1.65A {Homo sapiens} PDB: 3fmo_A* 3fmp_A* 3fhc_A

Probab=99.86  E-value=1e-20  Score=149.06  Aligned_cols=147  Identities=15%  Similarity=0.145  Sum_probs=117.1

Q ss_pred             eEEEEEEcCCCCEEE----EEeCCCcEEEEeCCCC--------cE---EEEEecCCceEEEEEECCC-CCEEEEeeCCCc
Q psy10953         13 DMWNVVFSPDDKYVL----SGSQSGKINLYGVETG--------KL---EQIFDTRGKFTLSIAYSTD-GHWIASGALDGI   76 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~----~~~~d~~i~~~d~~~~--------~~---~~~~~~~~~~~~~~~~s~d-~~~l~~~~~d~~   76 (181)
                      .+.+++|+|+|++|+    +++.|++|++||++++        +.   ...+..|...+.+++|+|+ +.+|++++.|+.
T Consensus        94 ~v~~l~~spdg~~lav~~~sgs~d~~v~iwd~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~v~~~p~~~~~las~s~Dg~  173 (434)
T 2oit_A           94 PIHHLALSCDNLTLSACMMSSEYGSIIAFFDVRTFSNEAKQQKRPFAYHKLLKDAGGMVIDMKWNPTVPSMVAVCLADGS  173 (434)
T ss_dssp             CEEEEEECTTSCEEEEEEEETTTEEEEEEEEHHHHHCTTCSSCCCSEEEECCCSGGGSEEEEEECSSCTTEEEEEETTSC
T ss_pred             cccEEEEcCCCCEEEEEEeccCCCceEEEEEccccccCCcCCcceeeeeeccCCCCCceEEEEECCCCCCEEEEEECCCe
Confidence            489999999999999    7889999999998754        21   2334446677889999998 789999999999


Q ss_pred             EEEEeCCCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-c-------CCcEEEEEEccCC
Q psy10953         77 INIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-H-------ADQVWCVCVAPDG  140 (181)
Q Consensus        77 v~i~d~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-------~~~v~~~~~sp~g  140 (181)
                      |++||++++        |...|.+++|+|+|++|++++.|+.|++||.+ ++....+. +       ...+.+++|++++
T Consensus       174 v~iwD~~~~~~~~~~~~~~~~v~~v~wspdg~~lasgs~dg~v~iwd~~-~~~~~~~~~~~~~~~~~~~~v~~v~w~~~~  252 (434)
T 2oit_A          174 IAVLQVTETVKVCATLPSTVAVTSVCWSPKGKQLAVGKQNGTVVQYLPT-LQEKKVIPCPPFYESDHPVRVLDVLWIGTY  252 (434)
T ss_dssp             EEEEEESSSEEEEEEECGGGCEEEEEECTTSSCEEEEETTSCEEEECTT-CCEEEEECCCTTCCTTSCEEEEEEEEEETT
T ss_pred             EEEEEcCCCcceeeccCCCCceeEEEEcCCCCEEEEEcCCCcEEEEccC-CcccccccCCcccCCCCceeEEEEEEecCc
Confidence            999999753        55679999999999999999999999999998 33333332 1       2278999999998


Q ss_pred             CEEEEEc-CCC------cEEEEeCCCC
Q psy10953        141 DKFVSVG-EDK------AVHMYSYKPE  160 (181)
Q Consensus       141 ~~l~~~~-~d~------~v~i~~~~~~  160 (181)
                      .++++.+ .++      .+++|++...
T Consensus       253 ~~l~~~~~~dg~~~~~~~v~i~~l~~~  279 (434)
T 2oit_A          253 VFAIVYAAADGTLETSPDVVMALLPKK  279 (434)
T ss_dssp             EEEEEEEETTCCSSSCCEEEEEECCCT
T ss_pred             eEEEEEccCCCccCCCCceEEEEeccC
Confidence            8876544 332      3899998653

>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A

Probab=99.85  E-value=2.9e-19  Score=139.86  Aligned_cols=160  Identities=16%  Similarity=0.186  Sum_probs=121.5

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEE-EEeCCCc--EEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC--cEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVL-SGSQSGK--INLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG--IIN   78 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~-~~~~d~~--i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~--~v~   78 (181)
                      ..+..++..+.+++|+|||++|+ +++.++.  |++||+.+++...+ ..+...+.+++|+|||++|++++. ++  .++
T Consensus       216 ~~l~~~~~~~~~~~~spdg~~la~~~~~~g~~~i~~~d~~~~~~~~l-~~~~~~~~~~~~spdg~~l~~~s~~~g~~~i~  294 (415)
T 2hqs_A          216 RQVASFPRHNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQV-TDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVY  294 (415)
T ss_dssp             EEEECCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEC-CCCSSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEeecCCCcccCEEEcCCCCEEEEEEecCCCceEEEEECCCCCEEeC-cCCCCcccceEECCCCCEEEEEECCCCCcEEE
Confidence            34455556688999999999887 6666654  99999998887543 344555678999999999988775 44  677


Q ss_pred             EEeCCCC-------CcccEEEEEEcCCCCEEEEEeCC---CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         79 IFDANTG-------HSSWVLSTAFTRDGKFFISASAD---HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        79 i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~d---~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +||+.++       +...+..++|+|+|++|++++.+   ..|++||+.+++......+ ..+.+++|+|+|+.|+.++.
T Consensus       295 ~~d~~~~~~~~l~~~~~~~~~~~~spdG~~l~~~~~~~g~~~i~~~d~~~~~~~~l~~~-~~~~~~~~spdg~~l~~~s~  373 (415)
T 2hqs_A          295 KVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLSST-FLDETPSLAPNGTMVIYSSS  373 (415)
T ss_dssp             EEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCEEECCCS-SSCEEEEECTTSSEEEEEEE
T ss_pred             EEECCCCCEEEEecCCCcccCeEECCCCCEEEEEECcCCceEEEEEECCCCCEEEecCC-CCcCCeEEcCCCCEEEEEEc
Confidence            7888643       33567889999999999888764   5899999998775433233 37899999999999998887


Q ss_pred             CC---cEEEEeCCCCeeEEEc
Q psy10953        149 DK---AVHMYSYKPEEEVEVN  166 (181)
Q Consensus       149 d~---~v~i~~~~~~~~~~~~  166 (181)
                      ++   .|++|++..+....+.
T Consensus       374 ~~~~~~l~~~d~~g~~~~~l~  394 (415)
T 2hqs_A          374 QGMGSVLNLVSTDGRFKARLP  394 (415)
T ss_dssp             ETTEEEEEEEETTSCCEEECC
T ss_pred             CCCccEEEEEECCCCcEEEee
Confidence            66   7999998755444443

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.82  E-value=7.1e-19  Score=145.91  Aligned_cols=138  Identities=14%  Similarity=0.168  Sum_probs=110.4

Q ss_pred             eeeEEEEEEcCCCCEEEEEeC-CC-----cEEEEeCCCCcEEEEEecCCc------------------------eEEEEE
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQ-SG-----KINLYGVETGKLEQIFDTRGK------------------------FTLSIA   60 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~-d~-----~i~~~d~~~~~~~~~~~~~~~------------------------~~~~~~   60 (181)
                      ...+.+++|||||++|++++. |+     +|++||+.+++....+..+..                        .+.+++
T Consensus        36 ~~~~~~~~~SpdG~~la~~~~~d~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~  115 (741)
T 2ecf_A           36 GPTLMKPKVAPDGSRVTFLRGKDSDRNQLDLWSYDIGSGQTRLLVDSKVVLPGTETLSDEEKARRERQRIAAMTGIVDYQ  115 (741)
T ss_dssp             CCCCEEEEECTTSSEEEEEECCSSCTTEEEEEEEETTTCCEEEEECGGGTC--------------------CCEESCCCE
T ss_pred             CCCCCCceEecCCCEEEEEeccCCCCcccEEEEEECCCCceeEccchhhcccccccccchhhhhhhhhhhccccCcceeE
Confidence            445789999999999999998 88     899999999988777654322                        245789


Q ss_pred             ECCCCCEEEEeeCCCcEEEEeCCCC---C-------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CC
Q psy10953         61 YSTDGHWIASGALDGIINIFDANTG---H-------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-AD  129 (181)
Q Consensus        61 ~s~d~~~l~~~~~d~~v~i~d~~~~---~-------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~  129 (181)
                      |||||++|++++. +.+++||+.++   .       ...+..++|||||++|++++ ++.|++||+.+++....... ..
T Consensus       116 ~SpDg~~l~~~~~-~~i~~~d~~~~~~~~~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~  193 (741)
T 2ecf_A          116 WSPDAQRLLFPLG-GELYLYDLKQEGKAAVRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGST  193 (741)
T ss_dssp             ECTTSSEEEEEET-TEEEEEESSSCSTTSCCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCS
T ss_pred             ECCCCCEEEEEeC-CcEEEEECCCCCcceEEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCcc
Confidence            9999999998886 89999998765   2       34688999999999999888 46899999988765443322 21


Q ss_pred             c----------------EEEEEEccCCCEEEEEcCCC
Q psy10953        130 Q----------------VWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus       130 ~----------------v~~~~~sp~g~~l~~~~~d~  150 (181)
                      .                +.+++|||||++|+.++.|+
T Consensus       194 ~~~~g~~~~v~~~~~~~~~~~~~SpDg~~l~~~~~d~  230 (741)
T 2ecf_A          194 TIGNGIAEFVADEEMDRHTGYWWAPDDSAIAYARIDE  230 (741)
T ss_dssp             SEEESCCCHHHHHHSCCCCSEEECTTSSCEEEEEEEC
T ss_pred             ceeccccceeeeeccccccceEECCCCCEEEEEEEcC
Confidence            1                46799999999999987654

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.81  E-value=1.4e-17  Score=134.56  Aligned_cols=162  Identities=14%  Similarity=0.180  Sum_probs=127.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeC--CCCcEEEEEecCCceEEEEEECC----CCCEEEEeeC-CCc
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGV--ETGKLEQIFDTRGKFTLSIAYST----DGHWIASGAL-DGI   76 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~--~~~~~~~~~~~~~~~~~~~~~s~----d~~~l~~~~~-d~~   76 (181)
                      +..+..+.. ++.++|+|||++|++++.|++|++||+  .+++.+..+.. +.....++|+|    ||+++++++. ++.
T Consensus       172 ~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~-g~~p~~va~sp~~~~dg~~l~v~~~~~~~  249 (543)
T 1nir_A          172 VKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKI-GIEARSVESSKFKGYEDRYTIAGAYWPPQ  249 (543)
T ss_dssp             EEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEEC-CSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEec-CCCcceEEeCCCcCCCCCEEEEEEccCCe
Confidence            344443333 789999999999999999999999999  88888777764 44457899999    9999998874 899


Q ss_pred             EEEEeCCCCC-------------------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceee--eeecCCcEEEE
Q psy10953         77 INIFDANTGH-------------------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMH--TFKHADQVWCV  134 (181)
Q Consensus        77 v~i~d~~~~~-------------------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~--~~~~~~~v~~~  134 (181)
                      |.+||..+..                   ...+..+.++|++. ++++...++.|.+||+.+.+.+.  .+.+...+.++
T Consensus       250 v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g~i~vvd~~~~~~l~~~~i~~~~~~~~~  329 (543)
T 1nir_A          250 FAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLHDG  329 (543)
T ss_dssp             EEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEECTTSSSCEEEEEECCSSCCCE
T ss_pred             EEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCCeEEEEEecCCCcceeEEeccCcCccCc
Confidence            9999986532                   12577899999776 56677778999999998765443  44556668899


Q ss_pred             EEccCCCEEEEEc-CCCcEEEEeCCCCeeEEEcC
Q psy10953        135 CVAPDGDKFVSVG-EDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       135 ~~sp~g~~l~~~~-~d~~v~i~~~~~~~~~~~~~  167 (181)
                      +|+|+|+++++++ .++.|.+||..+++.+....
T Consensus       330 ~~spdg~~l~va~~~~~~v~v~D~~tg~l~~~i~  363 (543)
T 1nir_A          330 GWDSSHRYFMTAANNSNKVAVIDSKDRRLSALVD  363 (543)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEE
T ss_pred             eECCCCCEEEEEecCCCeEEEEECCCCeEEEeec
Confidence            9999999876555 58899999999987665433

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.80  E-value=9.4e-18  Score=123.45  Aligned_cols=152  Identities=16%  Similarity=0.155  Sum_probs=113.9

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CcEEEEEecC-CceEEEEEECCCCCEEEEeeC--CC--cEEE
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET-GKLEQIFDTR-GKFTLSIAYSTDGHWIASGAL--DG--IINI   79 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~--d~--~v~i   79 (181)
                      .+..+...+.+++|+|+|++|++++ ++.|++||+.+ ++.......+ ...+.+++|+|++++|++++.  ++  .+..
T Consensus        36 ~~~~~~~~v~~~~~spdg~~l~~~~-~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~l~~  114 (297)
T 2ojh_A           36 VVWQTPELFEAPNWSPDGKYLLLNS-EGLLYRLSLAGDPSPEKVDTGFATICNNDHGISPDGALYAISDKVEFGKSAIYL  114 (297)
T ss_dssp             EEEEESSCCEEEEECTTSSEEEEEE-TTEEEEEESSSCCSCEECCCTTCCCBCSCCEECTTSSEEEEEECTTTSSCEEEE
T ss_pred             eeccCCcceEeeEECCCCCEEEEEc-CCeEEEEeCCCCCCceEeccccccccccceEECCCCCEEEEEEeCCCCcceEEE
Confidence            3344555688999999999999887 78999999998 8877665444 244567899999999999883  33  4555


Q ss_pred             EeCCCC------CcccEEEEEEcCCCCEEE-EEeCCCcEEEEecC--CCceeeeeecCCcEEEEEEccCCCEEEEEc-CC
Q psy10953         80 FDANTG------HSSWVLSTAFTRDGKFFI-SASADHTVRVWNFA--RRENMHTFKHADQVWCVCVAPDGDKFVSVG-ED  149 (181)
Q Consensus        80 ~d~~~~------~~~~v~~~~~s~~~~~l~-~~~~d~~i~v~d~~--~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d  149 (181)
                      +++..+      ....+..++|+|++++++ ++..++.+++|++.  ++.......+...+.+++|+|+|+.++.++ .+
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~  194 (297)
T 2ojh_A          115 LPSTGGTPRLMTKNLPSYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDSGVETRLTHGEGRNDGPDYSPDGRWIYFNSSRT  194 (297)
T ss_dssp             EETTCCCCEECCSSSSEEEEEECTTSSEEEEEEEETTEEEEEEEETTTCCEEECCCSSSCEEEEEECTTSSEEEEEECTT
T ss_pred             EECCCCceEEeecCCCccceEECCCCCEEEEEECCCCceEEEEEECCCCcceEcccCCCccccceECCCCCEEEEEecCC
Confidence            555432      223478889999999776 77788989999853  344333334667899999999999887766 48


Q ss_pred             CcEEEEeCC
Q psy10953        150 KAVHMYSYK  158 (181)
Q Consensus       150 ~~v~i~~~~  158 (181)
                      +.+++|.+.
T Consensus       195 ~~~~i~~~~  203 (297)
T 2ojh_A          195 GQMQIWRVR  203 (297)
T ss_dssp             SSCEEEEEE
T ss_pred             CCccEEEEC
Confidence            889999875

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.79  E-value=1.8e-17  Score=124.58  Aligned_cols=149  Identities=18%  Similarity=0.258  Sum_probs=120.1

Q ss_pred             eEEEEEEcCCCCEEEEEe------------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953         13 DMWNVVFSPDDKYVLSGS------------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      .+..++|+|+|+++++++            .++.|.+||+.+++....+.... .+..+.|+|||++|+++  ++.+++|
T Consensus        83 ~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           83 SLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPR-QITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             CTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCS-SCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             cccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCC-CcceeEECCCCCEEEEe--CCeEEEE
Confidence            356789999999998886            57999999999988877766533 34578899999988877  5789999


Q ss_pred             eCCCCC--------c-----------------------------------------------------------------
Q psy10953         81 DANTGH--------S-----------------------------------------------------------------   87 (181)
Q Consensus        81 d~~~~~--------~-----------------------------------------------------------------   87 (181)
                      |+.++.        .                                                                 
T Consensus       160 d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~~~~~~~~~~~~~~  239 (337)
T 1pby_B          160 DPEAGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIM  239 (337)
T ss_dssp             ETTTTEEEEEECSTTTTTTTBCCCBCCCCCCCCTTTTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCEEEEEEEEC
T ss_pred             ECCCCcEeeeeeccccCCCceeCCCccEEeeeccCCCceeeeeeccccccccccccccccceEEEeCCCCCceEeecCCC
Confidence            875320        0                                                                 


Q ss_pred             -ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953         88 -SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus        88 -~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                       ..+..++|+|+|++++++  ++.|++||+.+++.+..+.....+.+++|+|+|+++++++.++.|++|++.+++.+...
T Consensus       240 ~~~~~~~~~s~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~v~d~~~~~~~~~~  317 (337)
T 1pby_B          240 DVFYFSTAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQV  317 (337)
T ss_dssp             SSCEEEEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEEEE
T ss_pred             CCceeeEEECCCCCEEEEe--CCeEEEEECCCCcCcceecCCCceeeEEECCCCCEEEEEcCCCcEEEEECcCCcEEEEE
Confidence             012358999999988877  68999999999888777776667889999999999999888999999999988776544

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.78  E-value=5.9e-17  Score=122.73  Aligned_cols=153  Identities=12%  Similarity=0.141  Sum_probs=122.2

Q ss_pred             eEEEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-----
Q psy10953         13 DMWNVVFSPDDKYVLSGS--QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ...+++|+|+|+++++++  .++.|.+||..+++....+...+....++.|+|+|+++++++.++.+.+||+.++     
T Consensus       142 ~~~~~~~s~dg~~l~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~  221 (353)
T 3vgz_A          142 QPRELVADDATNTVYISGIGKESVIWVVDGGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSR  221 (353)
T ss_dssp             EEEEEEEETTTTEEEEEEESSSCEEEEEETTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEE
T ss_pred             CCceEEECCCCCEEEEEecCCCceEEEEcCCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEE
Confidence            368899999999887766  4788999999999988877644444557899999999999999999999998653     


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEEEe
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHMYS  156 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~  156 (181)
                             +...+..++|+|+|++++.++. ++.|++||+.+++.+..+..... .+++|+|+|+++++++ .++.|.+|+
T Consensus       222 ~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~-~~~~~s~dg~~l~v~~~~~~~v~~~d  300 (353)
T 3vgz_A          222 KKLLDDGKEHFFINISLDTARQRAFITDSKAAEVLVVDTRNGNILAKVAAPES-LAVLFNPARNEAYVTHRQAGKVSVID  300 (353)
T ss_dssp             EECCCSSSCCCEEEEEEETTTTEEEEEESSSSEEEEEETTTCCEEEEEECSSC-CCEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEcCCCCCCcccceEEECCCCCEEEEEeCCCCEEEEEECCCCcEEEEEEcCCC-ceEEECCCCCEEEEEECCCCeEEEEE
Confidence                   2335677999999997666654 58999999999887777664433 5799999999765555 689999999


Q ss_pred             CCCCeeEEEc
Q psy10953        157 YKPEEEVEVN  166 (181)
Q Consensus       157 ~~~~~~~~~~  166 (181)
                      ..+++.+...
T Consensus       301 ~~~~~~~~~~  310 (353)
T 3vgz_A          301 AKSYKVVKTF  310 (353)
T ss_dssp             TTTTEEEEEE
T ss_pred             CCCCeEEEEE
Confidence            9888766543

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=2e-16  Score=119.16  Aligned_cols=156  Identities=9%  Similarity=0.104  Sum_probs=114.4

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcE-EEEEecCCceEEEEEECCCCCEEEEeeCCC---cEEEE
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKL-EQIFDTRGKFTLSIAYSTDGHWIASGALDG---IINIF   80 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~---~v~i~   80 (181)
                      .+..+.... .++|+|+|+++++++. ++.|.+||..+++. ...+........+++|+|+|++++++..++   .+.+|
T Consensus        35 ~~~~~~~~~-~~~~s~dg~~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~v~  113 (331)
T 3u4y_A           35 QITLGYDFV-DTAITSDCSNVVVTSDFCQTLVQIETQLEPPKVVAIQEGQSSMADVDITPDDQFAVTVTGLNHPFNMQSY  113 (331)
T ss_dssp             EEECCCCEE-EEEECSSSCEEEEEESTTCEEEEEECSSSSCEEEEEEECSSCCCCEEECTTSSEEEECCCSSSSCEEEEE
T ss_pred             eEEccCCcc-eEEEcCCCCEEEEEeCCCCeEEEEECCCCceeEEecccCCCCccceEECCCCCEEEEecCCCCcccEEEE
Confidence            334444445 9999999997766655 88999999999987 565555555443389999999998655553   89999


Q ss_pred             eCCCCC-------cccEEEEEEcCCCCEE-EEEeCCCc-EEEEecCCCcee-----eeeecCCcEEEEEEccCCCEEEEE
Q psy10953         81 DANTGH-------SSWVLSTAFTRDGKFF-ISASADHT-VRVWNFARRENM-----HTFKHADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        81 d~~~~~-------~~~v~~~~~s~~~~~l-~~~~~d~~-i~v~d~~~~~~~-----~~~~~~~~v~~~~~sp~g~~l~~~  146 (181)
                      |+.++.       ...+..++|+|+|+++ ++...++. +++|++.....+     ........+.+++|+|+|++++++
T Consensus       114 d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~  193 (331)
T 3u4y_A          114 SFLKNKFISTIPIPYDAVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFDTGQEFISGGTRPFNITFTPDGNFAFVA  193 (331)
T ss_dssp             ETTTTEEEEEEECCTTEEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEEEEEEEECSSSSEEEEEECTTSSEEEEE
T ss_pred             ECCCCCeEEEEECCCCccceEECCCCCEEEEEecCCCceEEEEEECCCCcEeecCCccccCCCCccceEECCCCCEEEEE
Confidence            997642       2346789999999854 45556688 999998754322     222344568899999999976555


Q ss_pred             c-CCCcEEEEeCCCCee
Q psy10953        147 G-EDKAVHMYSYKPEEE  162 (181)
Q Consensus       147 ~-~d~~v~i~~~~~~~~  162 (181)
                      + .++.|++|++.+++.
T Consensus       194 ~~~~~~v~v~d~~~~~~  210 (331)
T 3u4y_A          194 NLIGNSIGILETQNPEN  210 (331)
T ss_dssp             ETTTTEEEEEECSSTTS
T ss_pred             eCCCCeEEEEECCCCcc
Confidence            4 688999999987765

>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}

Probab=99.78  E-value=4.9e-17  Score=122.50  Aligned_cols=146  Identities=15%  Similarity=0.237  Sum_probs=114.5

Q ss_pred             EEEEcCCCCEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCc-EEEEeCCCC-----
Q psy10953         16 NVVFSPDDKYVLSGSQSG---KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGI-INIFDANTG-----   85 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~-v~i~d~~~~-----   85 (181)
                      +++|+|+|++++++..++   .|.+||+.+++....+..... ..+++|+|||++++++ ..++. +.+|++...     
T Consensus        88 ~~~~s~dg~~l~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~i~~~~~~~~g~~~~  166 (331)
T 3u4y_A           88 DVDITPDDQFAVTVTGLNHPFNMQSYSFLKNKFISTIPIPYD-AVGIAISPNGNGLILIDRSSANTVRRFKIDADGVLFD  166 (331)
T ss_dssp             CEEECTTSSEEEECCCSSSSCEEEEEETTTTEEEEEEECCTT-EEEEEECTTSSCEEEEEETTTTEEEEEEECTTCCEEE
T ss_pred             ceEECCCCCEEEEecCCCCcccEEEEECCCCCeEEEEECCCC-ccceEECCCCCEEEEEecCCCceEEEEEECCCCcEee
Confidence            399999999999655553   899999999998877765444 4689999999866554 55578 999997531     


Q ss_pred             -------CcccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCce---eeeeecCCcEEEEEEccCCCEEEEEc-CCCcEE
Q psy10953         86 -------HSSWVLSTAFTRDGKFF-ISASADHTVRVWNFARREN---MHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVH  153 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~---~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~  153 (181)
                             ....+..++|+|+|+++ +++..++.|++||+.+++.   +..+.....+..++|+|+|+++++++ .++.|.
T Consensus       167 ~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~i~  246 (331)
T 3u4y_A          167 TGQEFISGGTRPFNITFTPDGNFAFVANLIGNSIGILETQNPENITLLNAVGTNNLPGTIVVSRDGSTVYVLTESTVDVF  246 (331)
T ss_dssp             EEEEEECSSSSEEEEEECTTSSEEEEEETTTTEEEEEECSSTTSCEEEEEEECSSCCCCEEECTTSSEEEEECSSEEEEE
T ss_pred             cCCccccCCCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcccceeeeccCCCCCceEEECCCCCEEEEEEcCCCEEE
Confidence                   12346789999999955 4555688999999998877   66777667788999999999877665 467899


Q ss_pred             EEeCCCCee
Q psy10953        154 MYSYKPEEE  162 (181)
Q Consensus       154 i~~~~~~~~  162 (181)
                      +|+..+++.
T Consensus       247 ~~d~~~~~~  255 (331)
T 3u4y_A          247 NFNQLSGTL  255 (331)
T ss_dssp             EEETTTTEE
T ss_pred             EEECCCCce
Confidence            999988765

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.77  E-value=1.5e-16  Score=119.78  Aligned_cols=146  Identities=15%  Similarity=0.314  Sum_probs=109.4

Q ss_pred             eEEEEEEcCCCCEEEEEe-CCCcEEEEeCCC-CcEEEE----Eec-CCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGS-QSGKINLYGVET-GKLEQI----FDT-RGKFTLSIAYSTDGHWIASG-ALDGIINIFDANT   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~-~~~~~~----~~~-~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~   84 (181)
                      .+.+++|+|+|+++++++ .++.|++||+.+ ++....    +.. .+..+..++|+|++++++++ ..++.+.+|++..
T Consensus       130 ~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~~~~~~i~~~~~~~  209 (343)
T 1ri6_A          130 GCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVNELNSSVDVWELKD  209 (343)
T ss_dssp             TBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEETTTTEEEEEESSC
T ss_pred             CceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEeCCCCEEEEEEecC
Confidence            467899999999888777 899999999987 665432    222 33456689999999977655 4789999999843


Q ss_pred             --CC----------------cccEEEEEEcCCCCEEE-EEeCCCcEEEEecCC----CceeeeeecCCcEEEEEEccCCC
Q psy10953         85 --GH----------------SSWVLSTAFTRDGKFFI-SASADHTVRVWNFAR----RENMHTFKHADQVWCVCVAPDGD  141 (181)
Q Consensus        85 --~~----------------~~~v~~~~~s~~~~~l~-~~~~d~~i~v~d~~~----~~~~~~~~~~~~v~~~~~sp~g~  141 (181)
                        +.                ...+..++|+|+|++++ +...++.|++||+..    .+.+..+.....+.+++|+|+|+
T Consensus       210 ~~g~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~  289 (343)
T 1ri6_A          210 PHGNIECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLSKEGFQPTETQPRGFNVDHSGK  289 (343)
T ss_dssp             TTSCCEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEEEEEEEECSSSCCCEEECTTSS
T ss_pred             CCCcEEEEeeccccCccccccCCccceEECCCCCEEEEEecCCCEEEEEEEcCCCCceEEeeeecCCCccceEEECCCCC
Confidence              11                12355799999998776 444789999999982    23444444444588999999999


Q ss_pred             EEEEEc-CCCcEEEEeCC
Q psy10953        142 KFVSVG-EDKAVHMYSYK  158 (181)
Q Consensus       142 ~l~~~~-~d~~v~i~~~~  158 (181)
                      ++++++ .++.|.+|++.
T Consensus       290 ~l~~~~~~~~~v~v~~~d  307 (343)
T 1ri6_A          290 YLIAAGQKSHHISVYEIV  307 (343)
T ss_dssp             EEEEECTTTCEEEEEEEE
T ss_pred             EEEEecCCCCeEEEEEEc
Confidence            988888 57999999654

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.76  E-value=2.1e-18  Score=142.60  Aligned_cols=134  Identities=12%  Similarity=0.182  Sum_probs=105.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc---eEEEEEECCCCCEEEEeeCC---------CcEEEEe
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK---FTLSIAYSTDGHWIASGALD---------GIINIFD   81 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~s~d~~~l~~~~~d---------~~v~i~d   81 (181)
                      ..+++|+|||+++++ +.|++|++||+.+++....+..+..   .+.+++|||||++|++++.+         +.+++||
T Consensus        19 ~~~~~~spdg~~~~~-~~dg~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d   97 (723)
T 1xfd_A           19 DPEAKWISDTEFIYR-EQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSK   97 (723)
T ss_dssp             CCCCCBSSSSCBCCC-CSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEE
T ss_pred             ccccEEcCCCcEEEE-eCCCCEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCccceeecceeeEEEEE
Confidence            578899999997766 7899999999999988877765543   25689999999999998764         7888999


Q ss_pred             CCCCC----------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCC------------------cEE
Q psy10953         82 ANTGH----------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HAD------------------QVW  132 (181)
Q Consensus        82 ~~~~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~------------------~v~  132 (181)
                      +.++.          ...+..++|||||+.|+.++. +.|++||+.+++...... +..                  .+.
T Consensus        98 ~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~  176 (723)
T 1xfd_A           98 IPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHI  176 (723)
T ss_dssp             SSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSE
T ss_pred             CCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEECCCCceEEEecCCCCCceECcccceeEEEEeccCcc
Confidence            87543          223667899999999998886 799999998876554333 222                  237


Q ss_pred             EEEEccCCCEEEEEcCC
Q psy10953        133 CVCVAPDGDKFVSVGED  149 (181)
Q Consensus       133 ~~~~sp~g~~l~~~~~d  149 (181)
                      +++|||||+.|+.++.+
T Consensus       177 ~~~~SpDg~~la~~~~~  193 (723)
T 1xfd_A          177 AHWWSPDGTRLAYAAIN  193 (723)
T ss_dssp             EEEECTTSSEEEEEEEE
T ss_pred             eEEECCCCCEEEEEEEC
Confidence            89999999999988754

>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*

Probab=99.75  E-value=2.9e-16  Score=118.85  Aligned_cols=152  Identities=8%  Similarity=0.081  Sum_probs=120.5

Q ss_pred             EEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCc---------eEEEEEECCCCCEEEEee--CCCcEEEEe
Q psy10953         14 MWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGK---------FTLSIAYSTDGHWIASGA--LDGIINIFD   81 (181)
Q Consensus        14 ~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~s~d~~~l~~~~--~d~~v~i~d   81 (181)
                      ...++|+|+|++++ +...++.|.+||..+++....+..+..         ...++.|+|+|+++++++  .++.+.+||
T Consensus        91 ~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~i~~~d  170 (353)
T 3vgz_A           91 PFGATINNTTQTLWFGNTVNSAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGKESVIWVVD  170 (353)
T ss_dssp             CCSEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESSSCEEEEEE
T ss_pred             cceEEECCCCCEEEEEecCCCEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCCCceEEEEc
Confidence            56789999999665 455579999999999998877765431         146799999999877765  478899999


Q ss_pred             CCCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-----CCcEEEEEEccCCCEEEEEcC
Q psy10953         82 ANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-----ADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        82 ~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-----~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      +.++        +...+..++|+|+|+++++++.++.+.+||+.+++....+..     ...+.+++|+|+|+++++++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~  250 (353)
T 3vgz_A          171 GGNIKLKTAIQNTGKMSTGLALDSEGKRLYTTNADGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFITDS  250 (353)
T ss_dssp             TTTTEEEEEECCCCTTCCCCEEETTTTEEEEECTTSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEEES
T ss_pred             CCCCceEEEecCCCCccceEEECCCCCEEEEEcCCCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEEeC
Confidence            8754        223366789999999999999999999999999887766642     335788999999998776665


Q ss_pred             -CCcEEEEeCCCCeeEEE
Q psy10953        149 -DKAVHMYSYKPEEEVEV  165 (181)
Q Consensus       149 -d~~v~i~~~~~~~~~~~  165 (181)
                       ++.|.+|+..+++.+..
T Consensus       251 ~~~~v~~~d~~~~~~~~~  268 (353)
T 3vgz_A          251 KAAEVLVVDTRNGNILAK  268 (353)
T ss_dssp             SSSEEEEEETTTCCEEEE
T ss_pred             CCCEEEEEECCCCcEEEE
Confidence             58999999988776543

>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1

Probab=99.75  E-value=1.1e-16  Score=120.48  Aligned_cols=147  Identities=14%  Similarity=0.236  Sum_probs=110.2

Q ss_pred             eeEEEEEEcCCCCEEEEEeCC-CcEEEEeCC--CCcEE--EEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQS-GKINLYGVE--TGKLE--QIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIFDANTG   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d-~~i~~~d~~--~~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~~   85 (181)
                      ..+..++|+|+|++|++++.+ +.|.+|++.  +++..  ..+...+ .+..++|+|+++++++++. ++.+.+||+..+
T Consensus        38 ~~~~~~~~spdg~~l~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~~l~~~~~~~~~i~~~d~~~~  116 (343)
T 1ri6_A           38 GQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPG-SLTHISTDHQGQFVFVGSYNAGNVSVTRLEDG  116 (343)
T ss_dssp             SCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSS-CCSEEEECTTSSEEEEEETTTTEEEEEEEETT
T ss_pred             CCCceEEECCCCCEEEEeecCCCeEEEEEecCCCCceeeccccccCC-CCcEEEEcCCCCEEEEEecCCCeEEEEECCCC
Confidence            346779999999999888876 999999997  66644  3333334 4558999999998876654 888999998311


Q ss_pred             ----------CcccEEEEEEcCCCCEEEEEe-CCCcEEEEecCC-Cceee----ee--ecCCcEEEEEEccCCCEEEEEc
Q psy10953         86 ----------HSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFAR-RENMH----TF--KHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        86 ----------~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~-~~~~~----~~--~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                                ....+..++|+|+|+++++++ .++.|++||+.+ ++...    ..  .....+.+++|+|+|+++++++
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pdg~~l~~~~  196 (343)
T 1ri6_A          117 LPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDDGHLVAQDPAEVTTVEGAGPRHMVFHPNEQYAYCVN  196 (343)
T ss_dssp             EEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEEEECSTTCCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccCCCCceEEEECCCCCEEEEecCCCCEEEEEEecCCCceeeecccccccCCCCCcceEEECCCCCEEEEEe
Confidence                      123466789999999877777 789999999987 54322    12  2334688999999999776554


Q ss_pred             -CCCcEEEEeCCC
Q psy10953        148 -EDKAVHMYSYKP  159 (181)
Q Consensus       148 -~d~~v~i~~~~~  159 (181)
                       .++.|.+|++..
T Consensus       197 ~~~~~i~~~~~~~  209 (343)
T 1ri6_A          197 ELNSSVDVWELKD  209 (343)
T ss_dssp             TTTTEEEEEESSC
T ss_pred             CCCCEEEEEEecC
Confidence             789999999954

>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}

Probab=99.74  E-value=4.2e-17  Score=135.30  Aligned_cols=153  Identities=12%  Similarity=0.133  Sum_probs=117.3

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce----------------EEEEEECCCCCE
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF----------------TLSIAYSTDGHW   67 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~----------------~~~~~~s~d~~~   67 (181)
                      +..+..+...+..++|||||++|++++ ++.|++||+.+++...+.......                +..+.|||||++
T Consensus       144 ~~~l~~~~~~~~~~~~SPDG~~la~~~-~~~i~~~d~~~g~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~~~~~SpDg~~  222 (741)
T 2ecf_A          144 VRQLTHGEGFATDAKLSPKGGFVSFIR-GRNLWVIDLASGRQMQLTADGSTTIGNGIAEFVADEEMDRHTGYWWAPDDSA  222 (741)
T ss_dssp             CCBCCCSSSCEEEEEECTTSSEEEEEE-TTEEEEEETTTTEEEECCCCCCSSEEESCCCHHHHHHSCCCCSEEECTTSSC
T ss_pred             EEEcccCCcccccccCCCCCCEEEEEe-CCcEEEEecCCCCEEEeccCCccceeccccceeeeeccccccceEECCCCCE
Confidence            445555556689999999999999887 469999999988876654433221                246899999999


Q ss_pred             EEEeeCCC---------------------------------cEEEEeCCC-C----------CcccEEEEEEcCCCCEEE
Q psy10953         68 IASGALDG---------------------------------IINIFDANT-G----------HSSWVLSTAFTRDGKFFI  103 (181)
Q Consensus        68 l~~~~~d~---------------------------------~v~i~d~~~-~----------~~~~v~~~~~s~~~~~l~  103 (181)
                      |++++.|+                                 .+++||+.+ +          +...+..++| |||++|+
T Consensus       223 l~~~~~d~~~~~~~~~~~~~p~~~~~~~~~~~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-pDg~~l~  301 (741)
T 2ecf_A          223 IAYARIDESPVPVQKRYEVYADRTDVIEQRYPAAGDANVQVKLGVISPAEQAQTQWIDLGKEQDIYLARVNW-RDPQHLS  301 (741)
T ss_dssp             EEEEEEECTTSCEEEEEEECSSCEEEEEEECCBTTSCCCEEEEEEECSSTTCCCEEECCCSCSSEEEEEEEE-EETTEEE
T ss_pred             EEEEEEcCCCCceEecCCCCCCcccceEeecCCCCCCCCeeEEEEEECCCCCceEEecCCCCcceEEEEEEe-CCCCEEE
Confidence            99987665                                 788899876 3          3456788999 9999888


Q ss_pred             EEeC-----CCcEEEEecCCCceeeeeecCC-----cEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        104 SASA-----DHTVRVWNFARRENMHTFKHAD-----QVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       104 ~~~~-----d~~i~v~d~~~~~~~~~~~~~~-----~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      +++.     +..|++||+.+++....+....     .+..++|+|||+++++++.++.+++|.+.
T Consensus       302 ~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~~~l~~~~  366 (741)
T 2ecf_A          302 FQRQSRDQKKLDLVEVTLASNQQRVLAHETSPTWVPLHNSLRFLDDGSILWSSERTGFQHLYRID  366 (741)
T ss_dssp             EEEEETTSSEEEEEEEETTTCCEEEEEEEECSSCCCCCSCCEECTTSCEEEEECTTSSCEEEEEC
T ss_pred             EEEecccCCeEEEEEEECCCCceEEEEEcCCCCcCCcCCceEECCCCeEEEEecCCCccEEEEEc
Confidence            7654     4679999999887665554222     34578999999988888889888888765

>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}

Probab=99.74  E-value=1.3e-16  Score=117.37  Aligned_cols=150  Identities=18%  Similarity=0.288  Sum_probs=110.2

Q ss_pred             eeEEEEEEcCCCCEEEEEe--CCCcEEEE--eCCCCcEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeC--CC
Q psy10953         12 VDMWNVVFSPDDKYVLSGS--QSGKINLY--GVETGKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDA--NT   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~--~d~~i~~~--d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~--~~   84 (181)
                      ..+.+++|+|||++|++++  .++..++|  +..+++.. .+..... +..++|+||+++|+ ++..++.+.+|++  .+
T Consensus        85 ~~~~~~~~spdg~~l~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~~-~~~~~~spdg~~l~~~~~~~~~~~l~~~~~~~  162 (297)
T 2ojh_A           85 ICNNDHGISPDGALYAISDKVEFGKSAIYLLPSTGGTPR-LMTKNLP-SYWHGWSPDGKSFTYCGIRDQVFDIYSMDIDS  162 (297)
T ss_dssp             CBCSCCEECTTSSEEEEEECTTTSSCEEEEEETTCCCCE-ECCSSSS-EEEEEECTTSSEEEEEEEETTEEEEEEEETTT
T ss_pred             ccccceEECCCCCEEEEEEeCCCCcceEEEEECCCCceE-EeecCCC-ccceEECCCCCEEEEEECCCCceEEEEEECCC
Confidence            4467899999999999988  33445555  55555543 3333333 56789999999887 6778898899884  32


Q ss_pred             -------CCcccEEEEEEcCCCCEEEEEe-CCCcEEEEecC-CCceeeeee-cCCcEEEEEEccCCCEEEEEcCC-----
Q psy10953         85 -------GHSSWVLSTAFTRDGKFFISAS-ADHTVRVWNFA-RRENMHTFK-HADQVWCVCVAPDGDKFVSVGED-----  149 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~-~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d-----  149 (181)
                             .+...+..++|+|+|++++.++ .++.+++|++. .......+. +...+..++|+|+|++|+.++.+     
T Consensus       163 ~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~~~~  242 (297)
T 2ojh_A          163 GVETRLTHGEGRNDGPDYSPDGRWIYFNSSRTGQMQIWRVRVDGSSVERITDSAYGDWFPHPSPSGDKVVFVSYDADVFD  242 (297)
T ss_dssp             CCEEECCCSSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCEEECCCCSEEEEEEEECTTSSEEEEEEEETTCCS
T ss_pred             CcceEcccCCCccccceECCCCCEEEEEecCCCCccEEEECCCCCCcEEEecCCcccCCeEECCCCCEEEEEEcCCCCCc
Confidence                   2345688999999999877666 58899999876 333444443 55678899999999999888865     


Q ss_pred             ------CcEEEEeCCCCeeE
Q psy10953        150 ------KAVHMYSYKPEEEV  163 (181)
Q Consensus       150 ------~~v~i~~~~~~~~~  163 (181)
                            +.|++|++..++..
T Consensus       243 ~~~~~~~~l~~~d~~~~~~~  262 (297)
T 2ojh_A          243 HPRDLDVRVQLMDMDGGNVE  262 (297)
T ss_dssp             CCSSEEEEEEEEETTSCSCE
T ss_pred             ccccCceEEEEEecCCCCce
Confidence                  46999999877543

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.74  E-value=1.2e-17  Score=138.38  Aligned_cols=134  Identities=13%  Similarity=0.196  Sum_probs=103.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc---eEEEEEECCCCCEEEEeeC---------CCcEEEEe
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK---FTLSIAYSTDGHWIASGAL---------DGIINIFD   81 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~---~~~~~~~s~d~~~l~~~~~---------d~~v~i~d   81 (181)
                      ..+++|+|||+++++ +.|++|++||+.+++....+..+..   .+.+++|||||++|++++.         ++.+++||
T Consensus        18 ~~~~~~s~dg~~~~~-~~d~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d   96 (719)
T 1z68_A           18 TFFPNWISGQEYLHQ-SADNNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYD   96 (719)
T ss_dssp             CCCCEESSSSEEEEE-CTTSCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCccEECCCCeEEEE-cCCCCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCceeEEeecceEEEEEE
Confidence            357899999965554 4699999999999998877765432   2568999999999998766         78999999


Q ss_pred             CCCCCc-------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcE-----------------EEEE
Q psy10953         82 ANTGHS-------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQV-----------------WCVC  135 (181)
Q Consensus        82 ~~~~~~-------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v-----------------~~~~  135 (181)
                      +.++..       ..+..++|||||+.|+.+. ++.|++||+.+++......  +...+                 .+++
T Consensus        97 ~~~g~~~~~~~l~~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~  175 (719)
T 1z68_A           97 LSNGEFVRGNELPRPIQYLCWSPVGSKLAYVY-QNNIYLKQRPGDPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALW  175 (719)
T ss_dssp             TTTTEECCSSCCCSSBCCEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEE
T ss_pred             CCCCccccceecCcccccceECCCCCEEEEEE-CCeEEEEeCCCCCcEEEecCCCcCCeEcccccceeeeecccCcccEE
Confidence            976543       3467899999999998886 7899999998776543221  22222                 4799


Q ss_pred             EccCCCEEEEEcCC
Q psy10953        136 VAPDGDKFVSVGED  149 (181)
Q Consensus       136 ~sp~g~~l~~~~~d  149 (181)
                      |||||++|+.++.|
T Consensus       176 wSPDG~~la~~~~d  189 (719)
T 1z68_A          176 WSPNGKFLAYAEFN  189 (719)
T ss_dssp             ECTTSSEEEEEEEE
T ss_pred             ECCCCCEEEEEEEC
Confidence            99999999998854

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.74  E-value=2.7e-17  Score=135.88  Aligned_cols=160  Identities=12%  Similarity=0.133  Sum_probs=117.9

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC-----CcEEEEEecCCce--------------EEEEEECCCCCE
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET-----GKLEQIFDTRGKF--------------TLSIAYSTDGHW   67 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-----~~~~~~~~~~~~~--------------~~~~~~s~d~~~   67 (181)
                      +......+.+++|||||++|+++ .++.|++||+.+     ++..++.......              +.++.|||||++
T Consensus       116 l~~~~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~  194 (706)
T 2z3z_A          116 LFDTNEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSRAIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSC  194 (706)
T ss_dssp             EECCTTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCCCEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSE
T ss_pred             ccCCcccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCCcEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCE
Confidence            33344446778999999999985 689999999998     7766544333221              257899999999


Q ss_pred             EEEee---------------------------------CCCcEEEEeCCCC----------CcccEEEEEEcCCCCEEEE
Q psy10953         68 IASGA---------------------------------LDGIINIFDANTG----------HSSWVLSTAFTRDGKFFIS  104 (181)
Q Consensus        68 l~~~~---------------------------------~d~~v~i~d~~~~----------~~~~v~~~~~s~~~~~l~~  104 (181)
                      |++++                                 .+..+++||+.++          +...+..++|+|+|+.+++
T Consensus       195 la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~  274 (706)
T 2z3z_A          195 LAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTVGIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYV  274 (706)
T ss_dssp             EEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEEEEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEE
T ss_pred             EEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEEEEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEE
Confidence            99887                                 4467999998643          3356889999999999888


Q ss_pred             EeCCC-----cEEEEecCCCceeeee-e--cCC---cEEEEEEcc--CCCEEEEEcCCCcEEEEeCC-CCeeEEEcC
Q psy10953        105 ASADH-----TVRVWNFARRENMHTF-K--HAD---QVWCVCVAP--DGDKFVSVGEDKAVHMYSYK-PEEEVEVNG  167 (181)
Q Consensus       105 ~~~d~-----~i~v~d~~~~~~~~~~-~--~~~---~v~~~~~sp--~g~~l~~~~~d~~v~i~~~~-~~~~~~~~~  167 (181)
                      ++.++     .|++||+.+++....+ .  ...   .+..++|+|  ||+++++++.++.+++|.+. .+..+....
T Consensus       275 ~~~~~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~~sp~~dg~~l~~~~~~g~~~l~~~~~~~~~~~~l~  351 (706)
T 2z3z_A          275 AEVNRAQNECKVNAYDAETGRFVRTLFVETDKHYVEPLHPLTFLPGSNNQFIWQSRRDGWNHLYLYDTTGRLIRQVT  351 (706)
T ss_dssp             EEECTTSCEEEEEEEETTTCCEEEEEEEEECSSCCCCCSCCEECTTCSSEEEEEECTTSSCEEEEEETTSCEEEECC
T ss_pred             EEeCCCCCeeEEEEEECCCCceeeEEEEccCCCeECccCCceeecCCCCEEEEEEccCCccEEEEEECCCCEEEecC
Confidence            77665     8999999988333222 1  221   235689999  99999999889999999876 444444443

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.74  E-value=1.2e-15  Score=116.52  Aligned_cols=150  Identities=13%  Similarity=0.270  Sum_probs=106.9

Q ss_pred             EEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc-------EE-----EEE-ecCCceEEEEEECCCCCEEEEee-CCCcEE
Q psy10953         14 MWNVVFSPDDKYVLSGS-QSGKINLYGVETGK-------LE-----QIF-DTRGKFTLSIAYSTDGHWIASGA-LDGIIN   78 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~-------~~-----~~~-~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~   78 (181)
                      +.+++|+|||+++++++ .++.|++|++....       +.     ... ...+.....++|+|||+++++++ .++.|.
T Consensus       157 ~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~spdg~~l~v~~~~~~~v~  236 (361)
T 3scy_A          157 LHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVAPGSGPRHLIFNSDGKFAYLINEIGGTVI  236 (361)
T ss_dssp             EEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTCEEE
T ss_pred             ceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecCCCCCCeEEEEcCCCCEEEEEcCCCCeEE
Confidence            47799999999776554 58899999887443       21     111 12334456899999999887766 689999


Q ss_pred             EEeCCCCC-------------cccEEEEEEcCCCCEEEEEeCC--CcEEEEecC--CCc--eeeeeecCCcEEEEEEccC
Q psy10953         79 IFDANTGH-------------SSWVLSTAFTRDGKFFISASAD--HTVRVWNFA--RRE--NMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        79 i~d~~~~~-------------~~~v~~~~~s~~~~~l~~~~~d--~~i~v~d~~--~~~--~~~~~~~~~~v~~~~~sp~  139 (181)
                      +||+.++.             ...+..++|+|+|++|+++..+  +.|.+|++.  +++  .+..+.....+.+++|+|+
T Consensus       237 v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~~~~~~i~v~~~~~~~g~~~~~~~~~~g~~~~~~~~spd  316 (361)
T 3scy_A          237 AFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNRLKADGVAIFKVDETNGTLTKVGYQLTGIHPRNFIITPN  316 (361)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEECSSSCEEEEEEECTTTCCEEEEEEEECSSCCCEEEECTT
T ss_pred             EEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECCCCCCEEEEEEEcCCCCcEEEeeEecCCCCCceEEECCC
Confidence            99986431             1235689999999988666654  889999985  333  2333333446789999999


Q ss_pred             CCEEEEEc-CCCcEEEEeCC--CCeeE
Q psy10953        140 GDKFVSVG-EDKAVHMYSYK--PEEEV  163 (181)
Q Consensus       140 g~~l~~~~-~d~~v~i~~~~--~~~~~  163 (181)
                      |++|++++ .++.|.+|.+.  +++..
T Consensus       317 g~~l~~~~~~~~~v~v~~~d~~~g~~~  343 (361)
T 3scy_A          317 GKYLLVACRDTNVIQIFERDQATGLLT  343 (361)
T ss_dssp             SCEEEEEETTTTEEEEEEECTTTCCEE
T ss_pred             CCEEEEEECCCCCEEEEEEECCCCcEe
Confidence            99888877 56899997665  44433

>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24

Probab=99.74  E-value=6e-17  Score=133.91  Aligned_cols=151  Identities=11%  Similarity=0.021  Sum_probs=113.6

Q ss_pred             EEEEEEcCCCCEEEEEeCC---------CcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         14 MWNVVFSPDDKYVLSGSQS---------GKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d---------~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +.+++|||||++|++++.+         +.+.+||+.+++...+...  +...+..++|||||++|++++. +.+++||+
T Consensus        63 v~~~~~SpDg~~l~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~~~~~~~SPdG~~la~~~~-~~i~~~~~  141 (723)
T 1xfd_A           63 AIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIFE-NNIYYCAH  141 (723)
T ss_dssp             CSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEET-TEEEEESS
T ss_pred             cceEEECCCCCEEEEEecCccceeecceeeEEEEECCCCceEeccCCccccccccccEECCCCCEEEEEEC-CeEEEEEC
Confidence            7889999999999998764         6788999998886333222  1222457899999999998876 78999998


Q ss_pred             CCCCc--------cc------------------EEEEEEcCCCCEEEEEeCCC---------------------------
Q psy10953         83 NTGHS--------SW------------------VLSTAFTRDGKFFISASADH---------------------------  109 (181)
Q Consensus        83 ~~~~~--------~~------------------v~~~~~s~~~~~l~~~~~d~---------------------------  109 (181)
                      .++..        ..                  +..++|||||++|++++.++                           
T Consensus       142 ~~g~~~~~~~~~~~~~~~~g~~~~v~~ee~~~~~~~~~~SpDg~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  221 (723)
T 1xfd_A          142 VGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYPKA  221 (723)
T ss_dssp             SSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECCBT
T ss_pred             CCCceEEEecCCCCCceECcccceeEEEEeccCcceEEECCCCCEEEEEEECCCccceEEeeccCCcCCCcceeccCCCC
Confidence            75421        11                  26799999999998887543                           


Q ss_pred             -------cEEEEecCCCceeeeee-c------CCcEEEEEEccCCCEEEEEcC----CCcEEEEeCCCCeeEEE
Q psy10953        110 -------TVRVWNFARRENMHTFK-H------ADQVWCVCVAPDGDKFVSVGE----DKAVHMYSYKPEEEVEV  165 (181)
Q Consensus       110 -------~i~v~d~~~~~~~~~~~-~------~~~v~~~~~sp~g~~l~~~~~----d~~v~i~~~~~~~~~~~  165 (181)
                             .|++||+.+++....+. +      ...+..++|||||+++++.+.    +..|++|+..+++...+
T Consensus       222 G~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~g~~~~~  295 (723)
T 1xfd_A          222 GSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (723)
T ss_dssp             TSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             CCCCCeeEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcCCCCeEEEEEEeCCCCcceEE
Confidence                   79999998876444443 2      456889999999998876653    25799999988765544

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.74  E-value=1.3e-15  Score=115.65  Aligned_cols=151  Identities=19%  Similarity=0.297  Sum_probs=108.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEE--ec-CCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCC--C
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIF--DT-RGKFTLSIAYSTDGHWIAS-GALDGIINIFDANT--G   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~--~~-~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~--~   85 (181)
                      .+.+++|+|||+++++...++.|++|++. ++++....  .. .+.....++|+|||+++++ ...++.+.+|++..  +
T Consensus       142 ~~~~~~~spdg~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g  221 (347)
T 3hfq_A          142 HIHYTDLTPDNRLAVIDLGSDKVYVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTG  221 (347)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred             CceEEEECCCCcEEEEeCCCCEEEEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCC
Confidence            36789999999966666678899999998 66554322  22 2334557999999996665 56688999998753  2


Q ss_pred             C----------------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCC---ceeeeee-cCCcEEEEEEccCCCEEE
Q psy10953         86 H----------------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARR---ENMHTFK-HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        86 ~----------------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~---~~~~~~~-~~~~v~~~~~sp~g~~l~  144 (181)
                      .                ...+..++|+|+|++| ++...++.|.+|++...   ..+..+. +...+..++|+|||++|+
T Consensus       222 ~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~spdg~~l~  301 (347)
T 3hfq_A          222 AFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRGYNTLAVFAVTADGHLTLIQQISTEGDFPRDFDLDPTEAFVV  301 (347)
T ss_dssp             EEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEETTTEEEEEEECGGGCEEEEEEEECSSSCCCEEEECTTSSEEE
T ss_pred             ceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCCCCEEEEEEECCCCcEEEeEEEecCCCCcCeEEECCCCCEEE
Confidence            1                0346779999999976 55666899999998732   3333333 344588999999999888


Q ss_pred             EEcC-CCcEEEEeC--CCCeeE
Q psy10953        145 SVGE-DKAVHMYSY--KPEEEV  163 (181)
Q Consensus       145 ~~~~-d~~v~i~~~--~~~~~~  163 (181)
                      +++. ++.|.+|++  .+++..
T Consensus       302 v~~~~~~~v~v~~~d~~tg~l~  323 (347)
T 3hfq_A          302 VVNQNTDNATLYARDLTSGKLS  323 (347)
T ss_dssp             EEETTTTEEEEEEECTTTCCEE
T ss_pred             EEEcCCCcEEEEEEeCCCCeEE
Confidence            8775 489999955  445443

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.73  E-value=2.3e-16  Score=119.10  Aligned_cols=146  Identities=16%  Similarity=0.257  Sum_probs=113.1

Q ss_pred             EEEEEEcCCCCEEEEEeCC------------CcEEEEeCCCCcE---EEEEecCCceEEEEEECCCCCEEEEeeCCCcEE
Q psy10953         14 MWNVVFSPDDKYVLSGSQS------------GKINLYGVETGKL---EQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN   78 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d------------~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~   78 (181)
                      +..++|+|||+++++++.+            +.|.+||+.+++.   ...+.... .+.+++|+|||+ +++++.  .+.
T Consensus        94 ~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~-~~~~~~~s~dg~-l~~~~~--~i~  169 (349)
T 1jmx_B           94 MYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPR-QVYLMRAADDGS-LYVAGP--DIY  169 (349)
T ss_dssp             SSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCS-SCCCEEECTTSC-EEEESS--SEE
T ss_pred             ccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCC-cccceeECCCCc-EEEccC--cEE
Confidence            5789999999999988865            8999999988543   23343333 355788999999 555543  399


Q ss_pred             EEeCCCCCc------c----------------------------------------------------------------
Q psy10953         79 IFDANTGHS------S----------------------------------------------------------------   88 (181)
Q Consensus        79 i~d~~~~~~------~----------------------------------------------------------------   88 (181)
                      +||+.++..      .                                                                
T Consensus       170 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (349)
T 1jmx_B          170 KMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQE  249 (349)
T ss_dssp             EECTTTCCEEEEECSTTCCCTTBCCCBCCCCCCCCCTTCEEEEEEEEEEC-------CCCEEEEEEEEEETTTCCEEEEE
T ss_pred             EEeCCCCceeccccccccCCccccCccceeeecCCCcceeEEeeeeeeecCCCcCCccccccceeEEEEeccCCcEEecc
Confidence            999864310      0                                                                


Q ss_pred             ------cEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953         89 ------WVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        89 ------~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                            .+..++|+| +|++++++  ++.|++||+.+++.+..+.....+++++|+|+|++|++++.++.|.+|+..+++
T Consensus       250 ~~~~~~~~~~~~~sp~dg~~l~~~--~~~v~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~~v~v~d~~~~~  327 (349)
T 1jmx_B          250 FADLTELYFTGLRSPKDPNQIYGV--LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTLE  327 (349)
T ss_dssp             EEECSSCEEEEEECSSCTTEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECSSSSCEEEESBSSEEEEEETTTTE
T ss_pred             cccCCCcceeeEecCCCCCEEEEE--cCeEEEEECccCeEEEEEcCCCCccceEECCCCCEEEEecCCCeEEEEeccccc
Confidence                  234566779 99988877  789999999998877777766668899999999999888888999999999887


Q ss_pred             eEEE
Q psy10953        162 EVEV  165 (181)
Q Consensus       162 ~~~~  165 (181)
                      .+..
T Consensus       328 ~~~~  331 (349)
T 1jmx_B          328 KVKN  331 (349)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            7653

>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*

Probab=99.73  E-value=1.6e-16  Score=131.15  Aligned_cols=145  Identities=14%  Similarity=0.158  Sum_probs=113.9

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-----CC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-----GH   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-----~~   86 (181)
                      ..+.+++|||| +.++.+. ++++++||+.+++....... ...+.+++|||||++|+++ .++.|++||+.+     +.
T Consensus        82 ~~v~~~~~spd-~~~~~~~-~~~i~~~d~~~~~~~~l~~~-~~~~~~~~~SpdG~~la~~-~~~~i~v~~~~~~~~~~g~  157 (706)
T 2z3z_A           82 FPSFRTLDAGR-GLVVLFT-QGGLVGFDMLARKVTYLFDT-NEETASLDFSPVGDRVAYV-RNHNLYIARGGKLGEGMSR  157 (706)
T ss_dssp             CCCEEEEETTT-TEEEEEE-TTEEEEEETTTTEEEEEECC-TTCCTTCEECTTSSEEEEE-ETTEEEEEECBCTTSCCCC
T ss_pred             cCceeEEECCC-CeEEEEE-CCEEEEEECCCCceEEccCC-cccccCCcCCCCCCEEEEE-ECCeEEEEecCcccccCCC
Confidence            45889999999 6665554 59999999999887665543 3334578999999999885 689999999876     43


Q ss_pred             c--------cc--------------EEEEEEcCCCCEEEEEe---------------------------------CCCcE
Q psy10953         87 S--------SW--------------VLSTAFTRDGKFFISAS---------------------------------ADHTV  111 (181)
Q Consensus        87 ~--------~~--------------v~~~~~s~~~~~l~~~~---------------------------------~d~~i  111 (181)
                      .        ..              +..++|+|||++|++++                                 .+..|
T Consensus       158 ~~~~~~~~~~~~~~g~~~~~ee~~~~~~~~~SpDg~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~y~~~g~~~~~~~l  237 (706)
T 2z3z_A          158 AIAVTIDGTETLVYGQAVHQREFGIEKGTFWSPKGSCLAFYRMDQSMVKPTPIVDYHPLEAESKPLYYPMAGTPSHHVTV  237 (706)
T ss_dssp             CEESCSCCBTTEEESSCCGGGCTTCCCSEEECTTSSEEEEEEEECTTSCCEEEEECCSSSCEEEEECCCBTTSCCCEEEE
T ss_pred             cEEeccCCCCCeEcccchhhhhcCCCceEEECCCCCEEEEEEECCCCCceEEeeccCCCCCceEEeeCCCCCCCCCeeEE
Confidence            1        11              36889999999999887                                 44679


Q ss_pred             EEEecCCCceeeee---ecCCcEEEEEEccCCCEEEEEcCCC-----cEEEEeCCCC
Q psy10953        112 RVWNFARRENMHTF---KHADQVWCVCVAPDGDKFVSVGEDK-----AVHMYSYKPE  160 (181)
Q Consensus       112 ~v~d~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~d~-----~v~i~~~~~~  160 (181)
                      ++||+.+++.....   .+...+.+++|+|||+.|++++.++     .|++|+..++
T Consensus       238 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~v~~~d~~~g  294 (706)
T 2z3z_A          238 GIYHLATGKTVYLQTGEPKEKFLTNLSWSPDENILYVAEVNRAQNECKVNAYDAETG  294 (706)
T ss_dssp             EEEETTTTEEEECCCCSCTTCEEEEEEECTTSSEEEEEEECTTSCEEEEEEEETTTC
T ss_pred             EEEECCCCceEeeccCCCCceeEeeEEEECCCCEEEEEEeCCCCCeeEEEEEECCCC
Confidence            99999887754433   2445789999999999999887665     8999999888

>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*

Probab=99.73  E-value=5.7e-16  Score=125.18  Aligned_cols=143  Identities=15%  Similarity=0.191  Sum_probs=118.3

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC--CCC-------Ccc
Q psy10953         18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA--NTG-------HSS   88 (181)
Q Consensus        18 ~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~--~~~-------~~~   88 (181)
                      +|+|++..+++++.|++|.+||..+++++..+..... +..+.|+|||++|++++.|+.|++||+  .++       ...
T Consensus       144 ~~~p~~~~~vs~~~d~~V~v~D~~t~~~~~~i~~g~~-~~~v~~spdg~~l~v~~~d~~V~v~D~~~~t~~~~~~i~~g~  222 (543)
T 1nir_A          144 DLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGI  222 (543)
T ss_dssp             CCCGGGEEEEEEGGGTEEEEEETTTCCEEEEEECSTT-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCS
T ss_pred             ccCCCCEEEEEEcCCCeEEEEECCCceEEEEEecCcc-cceEEECCCCCEEEEECCCCeEEEEECcCCCCcEEEEEecCC
Confidence            4889999999999999999999999999888874333 568999999999999999999999999  543       223


Q ss_pred             cEEEEEEcC----CCCEEEEEeC-CCcEEEEecCCCceeeeeec-----------CC-cEEEEEEccCCCE-EEEEcCCC
Q psy10953         89 WVLSTAFTR----DGKFFISASA-DHTVRVWNFARRENMHTFKH-----------AD-QVWCVCVAPDGDK-FVSVGEDK  150 (181)
Q Consensus        89 ~v~~~~~s~----~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~-----------~~-~v~~~~~sp~g~~-l~~~~~d~  150 (181)
                      .+..++|+|    +|+++++++. +++|.+||..+.+.+..+..           +. .+..++++|+++. +++...++
T Consensus       223 ~p~~va~sp~~~~dg~~l~v~~~~~~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~~~g  302 (543)
T 1nir_A          223 EARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKETG  302 (543)
T ss_dssp             EEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTTT
T ss_pred             CcceEEeCCCcCCCCCEEEEEEccCCeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEECCCC
Confidence            568899999    9999888884 89999999998887766542           22 6889999998766 55666789


Q ss_pred             cEEEEeCCCCe
Q psy10953        151 AVHMYSYKPEE  161 (181)
Q Consensus       151 ~v~i~~~~~~~  161 (181)
                      .|.+|++.+..
T Consensus       303 ~i~vvd~~~~~  313 (543)
T 1nir_A          303 KVLLVNYKDID  313 (543)
T ss_dssp             EEEEEECTTSS
T ss_pred             eEEEEEecCCC
Confidence            99999987643

>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}

Probab=99.72  E-value=7.5e-16  Score=116.96  Aligned_cols=149  Identities=11%  Similarity=0.162  Sum_probs=105.9

Q ss_pred             eeeEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCcEEE--EEecCC---------ceEEEEEECCCCCEEEEeeCCCcE
Q psy10953         11 PVDMWNVVFSPDDKYVLSGS-QSGKINLYGVE-TGKLEQ--IFDTRG---------KFTLSIAYSTDGHWIASGALDGII   77 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~-~~~~~~--~~~~~~---------~~~~~~~~s~d~~~l~~~~~d~~v   77 (181)
                      ...+..++|+|||++|++++ .++++.+|++. +++...  .+...+         ..+.+++|+|||+.+++...++.+
T Consensus        85 ~~~p~~~a~spdg~~l~~~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~~~~v  164 (347)
T 3hfq_A           85 GTPPAYVAVDEARQLVYSANYHKGTAEVMKIAADGALTLTDTVQHSGHGPRPEQDGSHIHYTDLTPDNRLAVIDLGSDKV  164 (347)
T ss_dssp             SCCCSEEEEETTTTEEEEEETTTTEEEEEEECTTSCEEEEEEEECCCCCSSTTCSSCCEEEEEECTTSCEEEEETTTTEE
T ss_pred             CCCCEEEEECCCCCEEEEEeCCCCEEEEEEeCCCCCeeecceeecCCCCCCccccCCCceEEEECCCCcEEEEeCCCCEE
Confidence            33457899999999988887 67899999995 444332  222211         135679999999966666678899


Q ss_pred             EEEeCC-CCC-----------cccEEEEEEcCCCCEEEE-EeCCCcEEEEecCC--Cce--eeeee-cC------CcEEE
Q psy10953         78 NIFDAN-TGH-----------SSWVLSTAFTRDGKFFIS-ASADHTVRVWNFAR--REN--MHTFK-HA------DQVWC  133 (181)
Q Consensus        78 ~i~d~~-~~~-----------~~~v~~~~~s~~~~~l~~-~~~d~~i~v~d~~~--~~~--~~~~~-~~------~~v~~  133 (181)
                      .+|++. .+.           ...+..++|+|+|+++++ ...++.+++|++..  ++.  ...+. ..      ..+..
T Consensus       165 ~~~~~~~~g~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~  244 (347)
T 3hfq_A          165 YVYNVSDAGQLSEQSVLTMEAGFGPRHLVFSPDGQYAFLAGELSSQIASLKYDTQTGAFTQLGIVKTIPADYTAHNGAAA  244 (347)
T ss_dssp             EEEEECTTSCEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESSCTTCCSCCEEEE
T ss_pred             EEEEECCCCcEEEeeeEEcCCCCCCceEEECCCCCEEEEEeCCCCEEEEEEecCCCCceEEeeeeeecCCCCCCCCccee
Confidence            999987 331           124667899999996555 55678999999874  332  11221 11      35889


Q ss_pred             EEEccCCCEEE-EEcCCCcEEEEeCCC
Q psy10953        134 VCVAPDGDKFV-SVGEDKAVHMYSYKP  159 (181)
Q Consensus       134 ~~~sp~g~~l~-~~~~d~~v~i~~~~~  159 (181)
                      ++|+|||++++ +...++.|.+|++..
T Consensus       245 i~~spdG~~l~v~~~~~~~v~v~~~~~  271 (347)
T 3hfq_A          245 IRLSHDGHFLYVSNRGYNTLAVFAVTA  271 (347)
T ss_dssp             EEECTTSCEEEEEEETTTEEEEEEECG
T ss_pred             EEECCCCCEEEEEeCCCCEEEEEEECC
Confidence            99999999875 455688999999873

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=1.8e-16  Score=136.57  Aligned_cols=152  Identities=14%  Similarity=0.122  Sum_probs=124.3

Q ss_pred             eEEEEEEc-CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEE-EEeCCCC-----
Q psy10953         13 DMWNVVFS-PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN-IFDANTG-----   85 (181)
Q Consensus        13 ~~~~~~~s-~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~-i~d~~~~-----   85 (181)
                      .+..++|| |||++|++++ ++.+.+|++.+++........+..+..++|+ ||+.|++++.++.+. +||+..+     
T Consensus       297 ~v~~~~~S~pdG~~la~~~-~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l  374 (1045)
T 1k32_A          297 SKFAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKF  374 (1045)
T ss_dssp             GGGEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEEC
T ss_pred             ccceeeecCCCCCEEEEEE-cCEEEEEcCCCCceEEccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEe
Confidence            46789999 9999999887 8899999999887665433333256789999 999999988888888 8887643     


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEEEEEcCCC----------cE
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGEDK----------AV  152 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~----------~v  152 (181)
                        +...+..++|+|+|++|++++.++.|++||+.+++..... .+...+.+++|||||++|++++.++          .|
T Consensus       375 ~~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i  454 (1045)
T 1k32_A          375 EENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAI  454 (1045)
T ss_dssp             CCCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEE
T ss_pred             cCCccceeeeEECCCCCEEEEECCCCeEEEEECCCCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeE
Confidence              4567889999999999999999999999999988776666 4677789999999999998887643          89


Q ss_pred             EEEeCCCCeeEEEc
Q psy10953        153 HMYSYKPEEEVEVN  166 (181)
Q Consensus       153 ~i~~~~~~~~~~~~  166 (181)
                      ++|++.+++...+.
T Consensus       455 ~l~d~~~g~~~~l~  468 (1045)
T 1k32_A          455 HVYDMEGRKIFAAT  468 (1045)
T ss_dssp             EEEETTTTEEEECS
T ss_pred             EEEECCCCcEEEee
Confidence            99999887644333

>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*

Probab=99.72  E-value=2.2e-16  Score=135.98  Aligned_cols=151  Identities=11%  Similarity=0.120  Sum_probs=122.7

Q ss_pred             eeccCee-eEEEEEEcCCCCEEEEEeCCCcEE-EEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          6 KINVGPV-DMWNVVFSPDDKYVLSGSQSGKIN-LYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         6 ~~~~~~~-~~~~~~~s~~g~~l~~~~~d~~i~-~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      .+..++. .+..++|+ ||+.+++++.+..+. +|++.+++...+. .+...+..++|+|||++|++++.++.+++||+.
T Consensus       331 ~~~~~~~~~~~~~~~s-dg~~l~~~s~~~~l~~~~d~~~~~~~~l~-~~~~~~~~~~~SpDG~~la~~~~~~~v~~~d~~  408 (1045)
T 1k32_A          331 KVPEPLRIRYVRRGGD-TKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLE  408 (1045)
T ss_dssp             ECSCCSCEEEEEECSS-SEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             EccCCCcceEEeeeEc-CCCeEEEEECCCceEEEEECCCCCceEec-CCccceeeeEECCCCCEEEEECCCCeEEEEECC
Confidence            3444444 68899999 999999998888898 9999888766554 455566789999999999999999999999997


Q ss_pred             CC--------CcccEEEEEEcCCCCEEEEEeCCC----------cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEE
Q psy10953         84 TG--------HSSWVLSTAFTRDGKFFISASADH----------TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        84 ~~--------~~~~v~~~~~s~~~~~l~~~~~d~----------~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      ++        |...+..++|+|+|++|++++.++          .|++||+.+++......+...+..++|+|||++|+.
T Consensus       409 tg~~~~~~~~~~~~v~~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l~~~~~~~~~~~~spdG~~l~~  488 (1045)
T 1k32_A          409 TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYY  488 (1045)
T ss_dssp             TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEE
T ss_pred             CCceEEeccCCCCCccceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEeeCCCcccCCceEcCCCCEEEE
Confidence            64        445567899999999998887644          899999998774333346677889999999999999


Q ss_pred             EcCCCcEEEEeCC
Q psy10953        146 VGEDKAVHMYSYK  158 (181)
Q Consensus       146 ~~~d~~v~i~~~~  158 (181)
                      ++.++....|+..
T Consensus       489 ~s~~~~~~~~~~~  501 (1045)
T 1k32_A          489 LSYRSLDPSPDRV  501 (1045)
T ss_dssp             EESCCCCCEECSS
T ss_pred             EecccCCcCcchh
Confidence            9988887888754

>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*

Probab=99.70  E-value=7e-16  Score=116.48  Aligned_cols=149  Identities=15%  Similarity=0.123  Sum_probs=114.5

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC-ceEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCc------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG-KFTLSIAYSTDGHWIA-SGALDGIINIFDANTGHS------   87 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~~------   87 (181)
                      .++++++++++++++.+++|++||..+++....+.... .....++|+|+|+.++ +...++.+.+||+.++..      
T Consensus         4 g~~~~~~~~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~i~~~d~~t~~~~~~~~~   83 (349)
T 1jmx_B            4 GPALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANL   83 (349)
T ss_dssp             CCCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEES
T ss_pred             cccccCCCEEEEEeCCCCeEEEEECCCCcEEEEEecCCCCCCceeEECCCCCEEEEEeCCCCcEEEEeCCCCcEEEEEEc
Confidence            45678899999999999999999999999887776544 1234789999998665 455789999999875421      


Q ss_pred             --------ccEEEEEEcCCCCEEEEEeCC------------CcEEEEecCCCc---eeeeeecCCcEEEEEEccCCCEEE
Q psy10953         88 --------SWVLSTAFTRDGKFFISASAD------------HTVRVWNFARRE---NMHTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        88 --------~~v~~~~~s~~~~~l~~~~~d------------~~i~v~d~~~~~---~~~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                              ..+..++|+|+|+++++++.+            +.|.+||+.+++   .+....++..+.+++|+|+|+ ++
T Consensus        84 ~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~-l~  162 (349)
T 1jmx_B           84 SSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGS-LY  162 (349)
T ss_dssp             CCSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSEEEECCSSCCCEEECTTSC-EE
T ss_pred             ccccccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceeeeccCCCcccceeECCCCc-EE
Confidence                    115678999999998888855            899999998743   334445556788999999999 65


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      +++.  .|.+|+..+++.+....
T Consensus       163 ~~~~--~i~~~d~~~~~~~~~~~  183 (349)
T 1jmx_B          163 VAGP--DIYKMDVKTGKYTVALP  183 (349)
T ss_dssp             EESS--SEEEECTTTCCEEEEEC
T ss_pred             EccC--cEEEEeCCCCceecccc
Confidence            5543  49999998887665443

>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*

Probab=99.70  E-value=1.4e-15  Score=114.19  Aligned_cols=142  Identities=15%  Similarity=0.229  Sum_probs=113.3

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEEEecCCc--eEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCCc-------c-----
Q psy10953         24 KYVLSGSQSGKINLYGVETGKLEQIFDTRGK--FTLSIAYSTDGHWIA-SGALDGIINIFDANTGHS-------S-----   88 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~~-------~-----   88 (181)
                      +++++++.+++|++||..+++....+.....  .+..++|+|+|+.++ +...++.|.+||+.++..       .     
T Consensus         2 ~~~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~v~~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~   81 (337)
T 1pby_B            2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             cEEEEcCCCCeEEEEECCCCcEEEEEEcCCCCCCccceEEcCCCCEEEEEeCCCCeEEEEECCCCCeEeeEEcCCccccc
Confidence            5788999999999999999998877764441  245799999998765 455678999999875431       1     


Q ss_pred             -cEEEEEEcCCCCEEEEEe------------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         89 -WVLSTAFTRDGKFFISAS------------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        89 -~v~~~~~s~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                       .+..++|+|+|+++++++            .++.|++||+.+++....+.....+.+++|+|+|++++++  ++.|++|
T Consensus        82 ~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~--~~~i~~~  159 (337)
T 1pby_B           82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGL--GRDLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEE--SSSEEEE
T ss_pred             ccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCcceeEECCCCCEEEEe--CCeEEEE
Confidence             345689999999888876            5789999999988877777666678889999999988877  6889999


Q ss_pred             eCCCCeeEEEcC
Q psy10953        156 SYKPEEEVEVNG  167 (181)
Q Consensus       156 ~~~~~~~~~~~~  167 (181)
                      +..+++.+....
T Consensus       160 d~~~~~~~~~~~  171 (337)
T 1pby_B          160 DPEAGTLVEDKP  171 (337)
T ss_dssp             ETTTTEEEEEEC
T ss_pred             ECCCCcEeeeee
Confidence            999887765443

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.69  E-value=4.8e-16  Score=125.97  Aligned_cols=139  Identities=12%  Similarity=0.121  Sum_probs=108.7

Q ss_pred             EEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC----CcEEEEeCCCC----
Q psy10953         15 WNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD----GIINIFDANTG----   85 (181)
Q Consensus        15 ~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d----~~v~i~d~~~~----   85 (181)
                      ...+|+|||+.+ ++++.++.+.+||+.+++...+.....   .++.|||||++|++++.+    ..+++||+.++    
T Consensus       113 ~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~---~~~~~spDG~~la~~~~~~~~~~~i~~~d~~~g~~~~  189 (582)
T 3o4h_A          113 RILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG---FGFVSDIRGDLIAGLGFFGGGRVSLFTSNLSSGGLRV  189 (582)
T ss_dssp             EEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS---CEEEEEEETTEEEEEEEEETTEEEEEEEETTTCCCEE
T ss_pred             eeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC---ceEEECCCCCEEEEEEEcCCCCeEEEEEcCCCCCceE
Confidence            456888888643 333444555699999998777665444   478999999999988776    78999998654    


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCC--cEEEEecCCCceeeeee-cCCcEEEEE--------EccCCCEEEEEcCCCc
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADH--TVRVWNFARRENMHTFK-HADQVWCVC--------VAPDGDKFVSVGEDKA  151 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~-~~~~v~~~~--------~sp~g~~l~~~~~d~~  151 (181)
                         +...+..++|||||+.|+++..++  .|++||+.+++.. ... +...+..++        |+|||+.+++++.++.
T Consensus       190 l~~~~~~~~~~~~SpDG~~l~~~~~~~~~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~g~  268 (582)
T 3o4h_A          190 FDSGEGSFSSASISPGMKVTAGLETAREARLVTVDPRDGSVE-DLELPSKDFSSYRPTAITWLGYLPDGRLAVVARREGR  268 (582)
T ss_dssp             ECCSSCEEEEEEECTTSCEEEEEECSSCEEEEEECTTTCCEE-ECCCSCSHHHHHCCSEEEEEEECTTSCEEEEEEETTE
T ss_pred             eecCCCccccceECCCCCEEEEccCCCeeEEEEEcCCCCcEE-EccCCCcChhhhhhccccceeEcCCCcEEEEEEcCCc
Confidence               445678999999999999888888  8999999887766 333 444455555        9999988899999999


Q ss_pred             EEEEeC
Q psy10953        152 VHMYSY  157 (181)
Q Consensus       152 v~i~~~  157 (181)
                      +++|++
T Consensus       269 ~~l~~~  274 (582)
T 3o4h_A          269 SAVFID  274 (582)
T ss_dssp             EEEEET
T ss_pred             EEEEEE
Confidence            999999

>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}

Probab=99.68  E-value=7.9e-17  Score=133.39  Aligned_cols=148  Identities=11%  Similarity=0.116  Sum_probs=107.6

Q ss_pred             EEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQ---------SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      +..++|||||++|++++.         +++|++||+.+++........ ..+..++|||||+.|+++. ++.|++||+.+
T Consensus        62 ~~~~~~SpDg~~la~~~~~~~~~~~s~~~~i~~~d~~~g~~~~~~~l~-~~~~~~~~SPDG~~la~~~-~~~i~~~~~~~  139 (719)
T 1z68_A           62 ASNYGLSPDRQFVYLESDYSKLWRYSYTATYYIYDLSNGEFVRGNELP-RPIQYLCWSPVGSKLAYVY-QNNIYLKQRPG  139 (719)
T ss_dssp             CSEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEETTTTEECCSSCCC-SSBCCEEECSSTTCEEEEE-TTEEEEESSTT
T ss_pred             eeeEEECCCCCeEEEEecCceeEEeecceEEEEEECCCCccccceecC-cccccceECCCCCEEEEEE-CCeEEEEeCCC
Confidence            678999999999998876         789999999998862111111 2245789999999999885 78999999865


Q ss_pred             CCc---------ccE-----------------EEEEEcCCCCEEEEEeCCC-----------------------------
Q psy10953         85 GHS---------SWV-----------------LSTAFTRDGKFFISASADH-----------------------------  109 (181)
Q Consensus        85 ~~~---------~~v-----------------~~~~~s~~~~~l~~~~~d~-----------------------------  109 (181)
                      +..         ..+                 ..++|||||++|++++.|.                             
T Consensus       140 g~~~~l~~~~~~~~v~~g~~~~v~~ee~~~~~~~~~wSPDG~~la~~~~d~~~~~~~~~~~~~~~~~~~~~~~~yp~~g~  219 (719)
T 1z68_A          140 DPPFQITFNGRENKIFNGIPDWVYEEEMLATKYALWWSPNGKFLAYAEFNDTDIPVIAYSYYGDEQYPRTINIPYPKAGA  219 (719)
T ss_dssp             SCCEECCCCCBTTTEEESSCCHHHHHHTTCSSCCEEECTTSSEEEEEEEECTTSCEEEEEECCSSSSCEEEEEECCBTTS
T ss_pred             CCcEEEecCCCcCCeEcccccceeeeecccCcccEEECCCCCEEEEEEECCCCCceEEeeccCCCCCccceeecCCCCCC
Confidence            321         112                 3799999999999887542                             


Q ss_pred             -----cEEEEecCCCcee--eee-------ecCCcEEEEEEccCCCEEEEEcCC----CcEEEEe----CCCCeeE
Q psy10953        110 -----TVRVWNFARRENM--HTF-------KHADQVWCVCVAPDGDKFVSVGED----KAVHMYS----YKPEEEV  163 (181)
Q Consensus       110 -----~i~v~d~~~~~~~--~~~-------~~~~~v~~~~~sp~g~~l~~~~~d----~~v~i~~----~~~~~~~  163 (181)
                           .|++||+.+++..  ..+       .+...+..++||||++.+++....    ..|.+|+    ..+++..
T Consensus       220 ~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SpD~~~~~~~~~~~~~~~~l~~~d~~~~~~~g~~~  295 (719)
T 1z68_A          220 KNPVVRIFIIDTTYPAYVGPQEVPVPAMIASSDYYFSWLTWVTDERVCLQWLKRVQNVSVLSICDFREDWQTWDCP  295 (719)
T ss_dssp             CCCEEEEEEEESSCHHHHCCEECCCCHHHHTSCEEEEEEEESSSSEEEEEEEESSTTEEEEEEEEECSSSSSEECC
T ss_pred             CCCeeEEEEEECCCCCccceeEccCCccCCCCcceEEEeEEeCCCeEEEEEeccccCeEEEEEEcccCCCCCCceE
Confidence                 7889999887642  111       245568999999998777664422    2488888    6665443

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.68  E-value=5.5e-15  Score=113.44  Aligned_cols=149  Identities=15%  Similarity=0.251  Sum_probs=109.3

Q ss_pred             eeEEEEEEcCCCCEEEEEe-CCCcEEEEeCC-CCcEEEE--Eec--CCceEEEEEECCCCCEEEEeeC-CCcEEEEeCC-
Q psy10953         12 VDMWNVVFSPDDKYVLSGS-QSGKINLYGVE-TGKLEQI--FDT--RGKFTLSIAYSTDGHWIASGAL-DGIINIFDAN-   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~-~~~~~~~--~~~--~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~-   83 (181)
                      ..+.+++|+|||+++++++ .++.|++|++. +++....  +..  ++.....++|+|||+++++++. ++.+.+|+.. 
T Consensus       145 ~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~~~spdg~~l~v~~~~~~~v~v~~~~~  224 (365)
T 1jof_A          145 TGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDP  224 (365)
T ss_dssp             CCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECT
T ss_pred             CcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEeEECCCCCEEEEEECCCCeEEEEEEeC
Confidence            3568899999999888765 46799999998 7876432  321  2445678999999999887764 6889998653 


Q ss_pred             -CCC------------------cc------cEEEEE-EcCCCCEEEEEeCCC------cEEEEecC-CCceee---eee-
Q psy10953         84 -TGH------------------SS------WVLSTA-FTRDGKFFISASADH------TVRVWNFA-RRENMH---TFK-  126 (181)
Q Consensus        84 -~~~------------------~~------~v~~~~-~s~~~~~l~~~~~d~------~i~v~d~~-~~~~~~---~~~-  126 (181)
                       ++.                  ..      .+..++ |+|+|++|++++.+.      .|.+|++. +++...   ... 
T Consensus       225 ~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~spdG~~l~v~~~~~~~~~~~~i~v~~~~~~g~~~~~~~~~~~  304 (365)
T 1jof_A          225 ATHMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPT  304 (365)
T ss_dssp             TTCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEEC
T ss_pred             CCCcEEEccceEEcCCCCcCCcccccccccccccEEEECCCCCEEEEECCCCCCCCCCeEEEEEECCCCCEEEeeeeeec
Confidence             221                  10      477899 999999887766432      79999986 454332   122 


Q ss_pred             cCCcEEEEEEcc---CCCEEEEEcCC-CcEEEEeCCCC
Q psy10953        127 HADQVWCVCVAP---DGDKFVSVGED-KAVHMYSYKPE  160 (181)
Q Consensus       127 ~~~~v~~~~~sp---~g~~l~~~~~d-~~v~i~~~~~~  160 (181)
                      +...+..++|+|   ||+++++++.+ +.|.+|++...
T Consensus       305 ~~~~~~~~a~sp~~~dg~~l~v~~~~~~~v~v~~~~~~  342 (365)
T 1jof_A          305 PTSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SSCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             CCCCcccceecCCCcCCCEEEEEEcCCCeEEEEEEchh
Confidence            334567889999   89999998864 89999999766

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.67  E-value=3.8e-15  Score=114.41  Aligned_cols=163  Identities=15%  Similarity=0.118  Sum_probs=119.5

Q ss_pred             ceeeeccCeeeEEE-----EEEcCCCCEEEEEeC-CC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC
Q psy10953          3 QISKINVGPVDMWN-----VVFSPDDKYVLSGSQ-SG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD   74 (181)
Q Consensus         3 ~~~~~~~~~~~~~~-----~~~s~~g~~l~~~~~-d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d   74 (181)
                      ++..++.++.....     .+|||||++|++++. ++  .|.+||+.+++..++...+...+....|+|||+.|+.++.+
T Consensus        22 ~~~~lt~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~g~~~l~~~d~~~g~~~~lt~~~~~~~~~~~~spdg~~l~~~~~~  101 (388)
T 3pe7_A           22 QVTRLTPPDVTCHRNYFYQKCFTRDGSKLLFGGAFDGPWNYYLLDLNTQVATQLTEGRGDNTFGGFLSPDDDALFYVKDG  101 (388)
T ss_dssp             EEEECSCTTSCEECCCTTSCCBCTTSCEEEEEECTTSSCEEEEEETTTCEEEECCCSSCBCSSSCEECTTSSEEEEEETT
T ss_pred             ceEEecCCcccccchhhcCccCCCCCCEEEEEEcCCCCceEEEEeCCCCceEEeeeCCCCCccceEEcCCCCEEEEEeCC
Confidence            34555555544444     789999999998887 66  38888999998877765555443357899999999999999


Q ss_pred             CcEEEEeCCCCCcc--------cEEE--EEEcCCCCEEEEE----------------------eCCCcEEEEecCCCcee
Q psy10953         75 GIINIFDANTGHSS--------WVLS--TAFTRDGKFFISA----------------------SADHTVRVWNFARRENM  122 (181)
Q Consensus        75 ~~v~i~d~~~~~~~--------~v~~--~~~s~~~~~l~~~----------------------~~d~~i~v~d~~~~~~~  122 (181)
                      +.+++||+.++...        .+..  ..++|++++++..                      ..+..|++||+.+++..
T Consensus       102 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~  181 (388)
T 3pe7_A          102 RNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGEST  181 (388)
T ss_dssp             TEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEE
T ss_pred             CeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceE
Confidence            99999999876532        2222  2358999988743                      23467999999988765


Q ss_pred             eeeecCCcEEEEEEcc-CCCEEEEEcCC------CcEEEEeCCCCeeEEE
Q psy10953        123 HTFKHADQVWCVCVAP-DGDKFVSVGED------KAVHMYSYKPEEEVEV  165 (181)
Q Consensus       123 ~~~~~~~~v~~~~~sp-~g~~l~~~~~d------~~v~i~~~~~~~~~~~  165 (181)
                      ....+...+..++|+| ||+.|+.++.+      ..|.+++...+....+
T Consensus       182 ~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l  231 (388)
T 3pe7_A          182 VILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKV  231 (388)
T ss_dssp             EEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEES
T ss_pred             EeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEe
Confidence            5556667789999999 99998877753      3788888765544433

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.67  E-value=2.2e-15  Score=125.55  Aligned_cols=133  Identities=13%  Similarity=0.141  Sum_probs=101.8

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce-----EEEEEECCCCCEEEEeeCC---------CcEE
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF-----TLSIAYSTDGHWIASGALD---------GIIN   78 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-----~~~~~~s~d~~~l~~~~~d---------~~v~   78 (181)
                      ..++++|+|||++++++  |++|++||+.+++...++..+...     ...+.|||||++|+.++.+         +.+.
T Consensus        18 ~~~~~~w~~dg~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~~~r~~~~~~~~   95 (740)
T 4a5s_A           18 KLYSLRWISDHEYLYKQ--ENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYD   95 (740)
T ss_dssp             CCCCEEECSSSEEEEEE--TTEEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEE
T ss_pred             cccccEECCCCcEEEEc--CCcEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCeeeEEEccceEEE
Confidence            35689999999988886  899999999999988777655321     1247899999999988765         5667


Q ss_pred             EEeCCCC-------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcE-----------------E
Q psy10953         79 IFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQV-----------------W  132 (181)
Q Consensus        79 i~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v-----------------~  132 (181)
                      +||+.++       +...+..++|||||+.|+.+. ++.|++||+.++.......  +...+                 .
T Consensus        96 ~~d~~~~~~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~  174 (740)
T 4a5s_A           96 IYDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYS  174 (740)
T ss_dssp             EEETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSB
T ss_pred             EEECCCCcEEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCc
Confidence            9999754       345688999999999998885 6899999998766432211  21212                 2


Q ss_pred             EEEEccCCCEEEEEcC
Q psy10953        133 CVCVAPDGDKFVSVGE  148 (181)
Q Consensus       133 ~~~~sp~g~~l~~~~~  148 (181)
                      .++|||||++|+.++.
T Consensus       175 ~~~wSpDg~~la~~~~  190 (740)
T 4a5s_A          175 ALWWSPNGTFLAYAQF  190 (740)
T ss_dssp             CEEECTTSSEEEEEEE
T ss_pred             ceEECCCCCEEEEEEE
Confidence            4889999999998763

>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A

Probab=99.66  E-value=2.9e-14  Score=108.83  Aligned_cols=147  Identities=16%  Similarity=0.250  Sum_probs=105.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCC----CcEEEEeCCC--CcEEEE--EecCCceEEEEEECCCCCEEEEee-CCCcEEEEeCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS----GKINLYGVET--GKLEQI--FDTRGKFTLSIAYSTDGHWIASGA-LDGIINIFDAN   83 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d----~~i~~~d~~~--~~~~~~--~~~~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~d~~   83 (181)
                      .+..++|+|||++|++++.+    +.+.+|++..  +++...  ....+.....+++  ++++|++++ .++.+.+|++.
T Consensus        51 ~p~~l~~spdg~~l~~~~~~~~~~~~v~~~~~~~~~g~~~~~~~~~~~~~~p~~~~~--dg~~l~~~~~~~~~v~~~~~~  128 (361)
T 3scy_A           51 NPSYLIPSADGKFVYSVNEFSKDQAAVSAFAFDKEKGTLHLLNTQKTMGADPCYLTT--NGKNIVTANYSGGSITVFPIG  128 (361)
T ss_dssp             CCCSEEECTTSSEEEEEECCSSTTCEEEEEEEETTTTEEEEEEEEECSSSCEEEEEE--CSSEEEEEETTTTEEEEEEBC
T ss_pred             CCceEEECCCCCEEEEEEccCCCCCcEEEEEEeCCCCcEEEeeEeccCCCCcEEEEE--CCCEEEEEECCCCEEEEEEeC
Confidence            34668999999999988875    7999998865  554332  2223444456777  888777765 57899999985


Q ss_pred             CCC----------------------cccEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCce--------------eeeee
Q psy10953         84 TGH----------------------SSWVLSTAFTRDGKFFISAS-ADHTVRVWNFARREN--------------MHTFK  126 (181)
Q Consensus        84 ~~~----------------------~~~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~--------------~~~~~  126 (181)
                      ...                      ...+..++|+|+|+++++++ .++.+++|++.....              .....
T Consensus       129 ~~g~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~spdg~~l~~~~~~~~~v~v~~~~~~~~~~~~~~l~~~~~~~~~~~~  208 (361)
T 3scy_A          129 QDGALLPASDVIEFKGSGPDKERQTMPHLHCVRITPDGKYLLADDLGTDQIHKFNINPNANADNKEKFLTKGTPEAFKVA  208 (361)
T ss_dssp             TTSCBCSCSEEEECCCCCSCTTTCSSCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTCCTTTCCCCEEEEEEEEEECC
T ss_pred             CCCcCcccceeEEccCCCCCccccCCCcceEEEECCCCCEEEEEeCCCCEEEEEEEcCCCCcccccceeecccccceecC
Confidence            321                      11246799999999665555 578999998875431              11223


Q ss_pred             cCCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCCCe
Q psy10953        127 HADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKPEE  161 (181)
Q Consensus       127 ~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~~~  161 (181)
                      ....+..++|+|||+++++++ .++.|.+|++.++.
T Consensus       209 ~~~~~~~~~~spdg~~l~v~~~~~~~v~v~~~~~g~  244 (361)
T 3scy_A          209 PGSGPRHLIFNSDGKFAYLINEIGGTVIAFRYADGM  244 (361)
T ss_dssp             TTCCEEEEEECTTSSEEEEEETTTCEEEEEEEETTE
T ss_pred             CCCCCeEEEEcCCCCEEEEEcCCCCeEEEEEecCCc
Confidence            445688999999999887777 58899999997654

>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A

Probab=99.65  E-value=3.2e-15  Score=121.19  Aligned_cols=155  Identities=11%  Similarity=0.099  Sum_probs=109.7

Q ss_pred             eeeEEEEEEcCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEE--eC--
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQ-SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIF--DA--   82 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~--d~--   82 (181)
                      ...++.++|+|||++||+++. |+++++|++.+++..++...+...+..+.|||| +.+++++.   +....+|  ++  
T Consensus        21 ~~~~~~~~~~~DG~~la~~s~~~g~~~lw~~~~g~~~~lt~~~~~~~~~~~~spd-~~l~~~~~~~g~~~~~l~~~~~~~   99 (582)
T 3o4h_A           21 AVEKYSLQGVVDGDKLLVVGFSEGSVNAYLYDGGETVKLNREPINSVLDPHYGVG-RVILVRDVSKGAEQHALFKVNTSR   99 (582)
T ss_dssp             HSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTEEEECCSSCCSEECEECTTCS-EEEEEEECSTTSCCEEEEEEETTS
T ss_pred             ccchheeecCCCCCeEEEEEccCCceeEEEEcCCCcEeeecccccccccccCCCC-eEEEEeccCCCCcceEEEEEeccC
Confidence            446899999999999998887 999999999777766555444345678999999 76666654   4545555  44  


Q ss_pred             CCCC-----cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC----CcE
Q psy10953         83 NTGH-----SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED----KAV  152 (181)
Q Consensus        83 ~~~~-----~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----~~v  152 (181)
                      ....     .......+|+|+|+ .+++...++.+.+||+.+++......++.  ++++|||||++++.++.+    +.|
T Consensus       100 ~g~~~~l~~~~~~~~~~~s~dg~~~~~~s~~~~~~~l~d~~~g~~~~l~~~~~--~~~~~spDG~~la~~~~~~~~~~~i  177 (582)
T 3o4h_A          100 PGEEQRLEAVKPMRILSGVDTGEAVVFTGATEDRVALYALDGGGLRELARLPG--FGFVSDIRGDLIAGLGFFGGGRVSL  177 (582)
T ss_dssp             TTCCEECTTSCSBEEEEEEECSSCEEEEEECSSCEEEEEEETTEEEEEEEESS--CEEEEEEETTEEEEEEEEETTEEEE
T ss_pred             CCccccccCCCCceeeeeCCCCCeEEEEecCCCCceEEEccCCcEEEeecCCC--ceEEECCCCCEEEEEEEcCCCCeEE
Confidence            2211     11234568888886 33344445556699998876554444444  789999999999988866    679


Q ss_pred             EEEeCCCCeeEEEcCC
Q psy10953        153 HMYSYKPEEEVEVNGG  168 (181)
Q Consensus       153 ~i~~~~~~~~~~~~~~  168 (181)
                      ++|++.+++...+..+
T Consensus       178 ~~~d~~~g~~~~l~~~  193 (582)
T 3o4h_A          178 FTSNLSSGGLRVFDSG  193 (582)
T ss_dssp             EEEETTTCCCEEECCS
T ss_pred             EEEcCCCCCceEeecC
Confidence            9999987766555433

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.65  E-value=6.7e-15  Score=120.73  Aligned_cols=151  Identities=13%  Similarity=0.148  Sum_probs=110.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCC----------CcEEEEeCCC------CcEEEEEecCCceEEEEEECCCCCEEEEeeC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQS----------GKINLYGVET------GKLEQIFDTRGKFTLSIAYSTDGHWIASGAL   73 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d----------~~i~~~d~~~------~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~   73 (181)
                      +...+..++|||||+.|++++.+          ..|++||+.+      ++...+...+...+..++|||||++|+..+.
T Consensus       128 ~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~  207 (662)
T 3azo_A          128 GGLRWADPVLLPERGEVWCMAEEFTGEGPSDVRRFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAW  207 (662)
T ss_dssp             TCEEEEEEEEETTTTEEEEEEEEECSSSTTCEEEEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEE
T ss_pred             CCccccCcEECCCCCEEEEEEecccCCCCCCceeEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEEC
Confidence            34567899999999999988877          5899999988      6654443033344557899999999998775


Q ss_pred             C--------CcEEEEeCC-CC-----------CcccEEEEEEcCCCCEEEEEeCCC--cEEEEecCCCceeeeeecCCc-
Q psy10953         74 D--------GIINIFDAN-TG-----------HSSWVLSTAFTRDGKFFISASADH--TVRVWNFARRENMHTFKHADQ-  130 (181)
Q Consensus        74 d--------~~v~i~d~~-~~-----------~~~~v~~~~~s~~~~~l~~~~~d~--~i~v~d~~~~~~~~~~~~~~~-  130 (181)
                      +        ..+++||+. ++           +...+..++|+|||++++++..++  .|++||+.+++......+... 
T Consensus       208 ~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~  287 (662)
T 3azo_A          208 DHPRMPWEGTELKTARVTEDGRFADTRTLLGGPEEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCRREEEF  287 (662)
T ss_dssp             CTTCCTTTCEEEEEEEECTTSCEEEEEEEEEETTBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSCCSSBS
T ss_pred             CCCCCCCCCcEEEEEEECCCCcccccEEeCCCCCceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeecccccccc
Confidence            5        379999987 44           134577899999999888888887  677777656554333222111 


Q ss_pred             --------EEEEEEccCCCEEEEEcCCCcEEEE--eCCCCe
Q psy10953        131 --------VWCVCVAPDGDKFVSVGEDKAVHMY--SYKPEE  161 (181)
Q Consensus       131 --------v~~~~~sp~g~~l~~~~~d~~v~i~--~~~~~~  161 (181)
                              +..++|+|+++.+++++. +.+++|  +...++
T Consensus       288 ~~p~w~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~d~~~~~  327 (662)
T 3azo_A          288 AGPLWTPGMRWFAPLANGLIAVVHGK-GAAVLGILDPESGE  327 (662)
T ss_dssp             SCCCCSTTCCSEEECTTSCEEEEEBS-SSCEEEEEETTTTE
T ss_pred             cCccccccCceEeEeCCCEEEEEEEc-CccEEEEEECCCCc
Confidence                    457899999999999998 999999  444444

>1jof_A Carboxy-CIS,CIS-muconate cyclase; beta-propeller, homotetramer, seMet-protein, isomerase; HET: PIN; 2.50A {Neurospora crassa} SCOP: b.69.10.1

Probab=99.65  E-value=6.2e-15  Score=113.16  Aligned_cols=144  Identities=14%  Similarity=0.208  Sum_probs=108.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCC-CCcEEEEEec--CCceEEEEEECCCCCE--EEEee-------------CC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVE-TGKLEQIFDT--RGKFTLSIAYSTDGHW--IASGA-------------LD   74 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~-~~~~~~~~~~--~~~~~~~~~~s~d~~~--l~~~~-------------~d   74 (181)
                      .+..++|+|||++|++++.+ .|.+|++. ++++......  .+. ...++|+|||++  +++++             .+
T Consensus        41 ~~~~~a~spdg~~l~~~~~~-~v~~~~~~~~g~~~~~~~~~~~g~-~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~  118 (365)
T 1jof_A           41 PISWMTFDHERKNIYGAAMK-KWSSFAVKSPTEIVHEASHPIGGH-PRANDADTNTRAIFLLAAKQPPYAVYANPFYKFA  118 (365)
T ss_dssp             CCSEEEECTTSSEEEEEEBT-EEEEEEEEETTEEEEEEEEECCSS-GGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSC
T ss_pred             CCcEEEECCCCCEEEEEccc-eEEEEEECCCCCEEEeeEeecCCC-CccEEECCCCCEEEEEEecCCcceeccceeecCC
Confidence            46789999999999998888 99999997 7876554332  132 235789999995  44443             68


Q ss_pred             CcEEEEeCCC-C------------CcccEEEEEEcCCCCEEEEEeC-CCcEEEEecC-CCcee--eeee---cCCcEEEE
Q psy10953         75 GIINIFDANT-G------------HSSWVLSTAFTRDGKFFISASA-DHTVRVWNFA-RRENM--HTFK---HADQVWCV  134 (181)
Q Consensus        75 ~~v~i~d~~~-~------------~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~-~~~~~--~~~~---~~~~v~~~  134 (181)
                      +.+.+|++.. +            +...+..++|+|+|+++++++. ++.|++||+. +++..  ..+.   +...+..+
T Consensus       119 g~v~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~spdG~~l~~~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~g~~p~~~  198 (365)
T 1jof_A          119 GYGNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWV  198 (365)
T ss_dssp             CEEEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEE
T ss_pred             ceEEEEccCCCCcCcceEeeEEeCCCCcceEEEECCCCCEEEEEcCCCCEEEEEEECCCCCEEEeeeEecCCCCCCCCEe
Confidence            8999999852 2            2245778999999998877664 6789999998 56532  2232   24568999


Q ss_pred             EEccCCCEEEEEcC-CCcEEEEeCC
Q psy10953        135 CVAPDGDKFVSVGE-DKAVHMYSYK  158 (181)
Q Consensus       135 ~~sp~g~~l~~~~~-d~~v~i~~~~  158 (181)
                      +|+|||+++++++. ++.|.+|++.
T Consensus       199 ~~spdg~~l~v~~~~~~~v~v~~~~  223 (365)
T 1jof_A          199 AMHPTGNYLYALMEAGNRICEYVID  223 (365)
T ss_dssp             EECTTSSEEEEEETTTTEEEEEEEC
T ss_pred             EECCCCCEEEEEECCCCeEEEEEEe
Confidence            99999999887775 6899999875

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.64  E-value=2.3e-13  Score=103.10  Aligned_cols=154  Identities=12%  Similarity=0.148  Sum_probs=119.3

Q ss_pred             eeEEEEEEcCCCCEEEEEeCC------------------------CcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQS------------------------GKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGH   66 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d------------------------~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~   66 (181)
                      ..+.+++++|+|+++++...+                        ++|.+||..++++...+.. .-.....++++++|+
T Consensus        24 ~~v~~va~d~~G~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~p~gia~d~~g~  103 (329)
T 3fvz_A           24 GQVSGVALDSKNNLVIFHRGDHVWDGNSFDSKFVYQQRGLGPIEEDTILVIDPNNAEILQSSGKNLFYLPHGLSIDTDGN  103 (329)
T ss_dssp             SCEEEEEECTTCCEEEEECTTCCCCTTSBCTTSCBSCGGGCSCCSCCEEEECTTTCCEEEEECTTTCSSEEEEEECTTSC
T ss_pred             CCceEEEECCCCCEEEEeCCCCeEEeeccCcceeecccccccccCCcEEEEECCCCeEEeccCCCccCCceEEEECCCCC
Confidence            457899999999999888777                        4799999999998765542 222456899999999


Q ss_pred             EEEEeeCCCcEEEEeCCCC------------------CcccEEEEEEcC-CCCEEEEEe-CCCcEEEEecCCCceeeeee
Q psy10953         67 WIASGALDGIINIFDANTG------------------HSSWVLSTAFTR-DGKFFISAS-ADHTVRVWNFARRENMHTFK  126 (181)
Q Consensus        67 ~l~~~~~d~~v~i~d~~~~------------------~~~~v~~~~~s~-~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~  126 (181)
                      ++++...++.|++||....                  +...+..++++| +++++++.+ .++.|++|| .++..+..+.
T Consensus       104 l~v~d~~~~~v~~~~~~g~~~~~~~~~~~~~~g~~~~~~~~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~  182 (329)
T 3fvz_A          104 YWVTDVALHQVFKLDPHSKEGPLLILGRSMQPGSDQNHFCQPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWG  182 (329)
T ss_dssp             EEEEETTTTEEEEECTTCSSCCSEEESBTTBCCCSTTCCSSEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEEC
T ss_pred             EEEEECCCCEEEEEeCCCCeEEEEEecccCCCCCCccccCCCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEec
Confidence            8888888899999997532                  122578999999 889888886 689999999 4555555543


Q ss_pred             c-C----------CcEEEEEEccC-CCEEEEEcCCCcEEEEeCCCCeeEEEc
Q psy10953        127 H-A----------DQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       127 ~-~----------~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~~~~~~~~  166 (181)
                      . .          ..+.+++++|+ ++.+++...++.|++|+..+++.+...
T Consensus       183 ~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~~~~~~G~~~~~~  234 (329)
T 3fvz_A          183 EESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQCFKTDTKEFVREI  234 (329)
T ss_dssp             EECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             cCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEEEECCCCcEEEEE
Confidence            1 1          23889999999 677777778899999999877666544

>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A

Probab=99.64  E-value=2.3e-14  Score=117.58  Aligned_cols=152  Identities=9%  Similarity=0.042  Sum_probs=106.0

Q ss_pred             EEEEc--CCCCE-EEEEeC-CCcEEEEeCC--C-CcEEEEEec----CCceEEEEEECCCCCEEEEeeCC----------
Q psy10953         16 NVVFS--PDDKY-VLSGSQ-SGKINLYGVE--T-GKLEQIFDT----RGKFTLSIAYSTDGHWIASGALD----------   74 (181)
Q Consensus        16 ~~~~s--~~g~~-l~~~~~-d~~i~~~d~~--~-~~~~~~~~~----~~~~~~~~~~s~d~~~l~~~~~d----------   74 (181)
                      ...|+  |||++ |+.++. +..|.++++.  + ++...+...    +...+..++|||||+.|++++.+          
T Consensus        81 ~~~~~~SPDg~~~la~~~~~~~~l~~~~~~~~g~~~~~~l~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~~~~~~  160 (662)
T 3azo_A           81 PWAGVPRPAGGPLLVFTHFGDQRLYAFEPDAPGGAVPRPLTPVSAVGGGLRWADPVLLPERGEVWCMAEEFTGEGPSDVR  160 (662)
T ss_dssp             CEEEECCSSSSCEEEEEBTTTCCEEEECTTSTTCCCCEECSCCCCSTTCEEEEEEEEETTTTEEEEEEEEECSSSTTCEE
T ss_pred             cceeeeecCCCeEEEEEECCCCeEEEEcCCCCCCCCCEeccCCccCCCCccccCcEECCCCCEEEEEEecccCCCCCCce
Confidence            45555  99998 776654 5667777776  3 544333321    34456689999999999988776          


Q ss_pred             CcEEEEeCCC------C--------CcccEEEEEEcCCCCEEEEEeCC--------CcEEEEecC-CC---ceeeeee-c
Q psy10953         75 GIINIFDANT------G--------HSSWVLSTAFTRDGKFFISASAD--------HTVRVWNFA-RR---ENMHTFK-H  127 (181)
Q Consensus        75 ~~v~i~d~~~------~--------~~~~v~~~~~s~~~~~l~~~~~d--------~~i~v~d~~-~~---~~~~~~~-~  127 (181)
                      ..+++||+.+      +        +...+..++|||||++|+.++.+        ..|++||+. ++   ....... +
T Consensus       161 ~~i~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SpDG~~la~~~~~~~~~~~~~~~i~~~d~~~~g~~~~~~~l~~~~  240 (662)
T 3azo_A          161 RFLAAVPLDGSAAADRSAVRELSDDAHRFVTGPRLSPDGRQAVWLAWDHPRMPWEGTELKTARVTEDGRFADTRTLLGGP  240 (662)
T ss_dssp             EEEEEEETTSTTTTCGGGSEESSCSCSSEECCCEECTTSSEEEEEEECTTCCTTTCEEEEEEEECTTSCEEEEEEEEEET
T ss_pred             eEEEEEECCCCccccCCceeEEEecCCCcccCceECCCCCEEEEEECCCCCCCCCCcEEEEEEECCCCcccccEEeCCCC
Confidence            5899999876      3        22345668999999999877744        379999998 45   3333333 3


Q ss_pred             CCcEEEEEEccCCCEEEEEcCCC--cEEEEeCCCCeeEEEcC
Q psy10953        128 ADQVWCVCVAPDGDKFVSVGEDK--AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       128 ~~~v~~~~~sp~g~~l~~~~~d~--~v~i~~~~~~~~~~~~~  167 (181)
                      ...+..++|+|||++++++..++  .|.+|+..+++...+..
T Consensus       241 ~~~~~~~~~spdg~l~~~~~~~~~~~l~~~~~~~~~~~~l~~  282 (662)
T 3azo_A          241 EEAIAQAEWAPDGSLIVATDRTGWWNLHRVDPATGAATQLCR  282 (662)
T ss_dssp             TBCEEEEEECTTSCEEEEECTTSSCEEEEECTTTCCEEESSC
T ss_pred             CceEcceEECCCCeEEEEECCCCCeEEEEEECCCCceeeccc
Confidence            56789999999999777777777  55566655555544443

>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...

Probab=99.62  E-value=8.5e-15  Score=122.03  Aligned_cols=164  Identities=9%  Similarity=0.121  Sum_probs=112.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceE-----------------EEEEECCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFT-----------------LSIAYSTDG   65 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~-----------------~~~~~s~d~   65 (181)
                      +.++..++..+...+|||||+.||.+. ++.|++|++.+++..++... +...+                 ..+.|||||
T Consensus       104 ~~~l~~~~~~~~~~~~SPdG~~la~~~-~~~i~~~~~~~~~~~~lt~~g~~~~~~~g~~~~v~~ee~~~~~~~~~wSpDg  182 (740)
T 4a5s_A          104 LITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSALWWSPNG  182 (740)
T ss_dssp             ECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBCEEECTTS
T ss_pred             EEEcccCCCcceeeEECCCCCEEEEEE-CCeEEEEECCCCceEEEcCCCCccceecCcccccccchhcCCCcceEECCCC
Confidence            445555566789999999999998885 78999999998876553221 11111                 137899999


Q ss_pred             CEEEEeeCCC------------------------------------cEEEEeCCC---C----------------CcccE
Q psy10953         66 HWIASGALDG------------------------------------IINIFDANT---G----------------HSSWV   90 (181)
Q Consensus        66 ~~l~~~~~d~------------------------------------~v~i~d~~~---~----------------~~~~v   90 (181)
                      ++|+.++.|.                                    .+++||+.+   +                +...+
T Consensus       183 ~~la~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~yp~~G~~~~~~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~  262 (740)
T 4a5s_A          183 TFLAYAQFNDTEVPLIEYSFYSDESLQYPKTVRVPYPKAGAVNPTVKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYL  262 (740)
T ss_dssp             SEEEEEEEECTTCCEEEEEECCSTTCSSCEEEEEECCBTTSCCCEEEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEE
T ss_pred             CEEEEEEEcccCCceEEEEeecCCCCCCCcceeecCCCCcCcCCeeEEEEEECCCCCCCCcceEEEecCCccCCCCCeEE
Confidence            9999875321                                    478899887   5                44567


Q ss_pred             EEEEEcCCCCEEEEEeC----CCcEEEEecCCCc----ee--ee---eecCCcE-----EEEEEccCCCEEE-EEcC-CC
Q psy10953         91 LSTAFTRDGKFFISASA----DHTVRVWNFARRE----NM--HT---FKHADQV-----WCVCVAPDGDKFV-SVGE-DK  150 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~----d~~i~v~d~~~~~----~~--~~---~~~~~~v-----~~~~~sp~g~~l~-~~~~-d~  150 (181)
                      ..++|+|||+.++....    +..|++||+.+++    +.  ..   ..+...+     ...+|+|||+.++ ..+. +|
T Consensus       263 ~~~~wspdg~~~~~~~~r~~~~~~i~~~d~~tg~~~~~~~~~~~l~~~~~~~~v~~~~~~~p~fspDG~~l~~~~s~~~G  342 (740)
T 4a5s_A          263 CDVTWATQERISLQWLRRIQNYSVMDICDYDESSGRWNCLVARQHIEMSTTGWVGRFRPSEPHFTLDGNSFYKIISNEEG  342 (740)
T ss_dssp             EEEEEEETTEEEEEEEESSTTEEEEEEEEEETTTTEEEECGGGCEEEECSSSCSSSSSCCCCEECTTSSEEEEEEECTTS
T ss_pred             EEEEEeCCCeEEEEEeCCCCCEEEEEEEECCCCccccceeEEEEeeeccCCceEccCcCCCceEcCCCCEEEEEEEcCCC
Confidence            88999999997665543    2369999998876    11  11   1233333     3678999999877 6653 33


Q ss_pred             --cEEEEeCCCCeeEEEcCC
Q psy10953        151 --AVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       151 --~v~i~~~~~~~~~~~~~~  168 (181)
                        .|++|+...++...+..+
T Consensus       343 ~~~l~~~~~~~~~~~~lT~g  362 (740)
T 4a5s_A          343 YRHICYFQIDKKDCTFITKG  362 (740)
T ss_dssp             CEEEEEEETTCSSCEESCCS
T ss_pred             ceEEEEEECCCCceEecccC
Confidence              578888876665555444

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.62  E-value=1.1e-13  Score=106.43  Aligned_cols=149  Identities=13%  Similarity=0.180  Sum_probs=110.7

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEEecC------CceEEEEEECCCCCEEEEeeC--CCcE
Q psy10953         16 NVVFSPDDKYVLSGS----------QSGKINLYGVETGKLEQIFDTR------GKFTLSIAYSTDGHWIASGAL--DGII   77 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~~~~~--d~~v   77 (181)
                      .++|+|||+++++++          .+++|.+||..+.+....+...      +.....+.++|||++|+++..  ++.|
T Consensus        54 ~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v  133 (361)
T 2oiz_A           54 HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADKLTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSI  133 (361)
T ss_dssp             EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTTCCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEE
T ss_pred             ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcCCcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeE
Confidence            899999999998886          3678999999998888766532      122346889999999988764  5678


Q ss_pred             EEEeCCCCCc----------------------------------------ccEE--------------------------
Q psy10953         78 NIFDANTGHS----------------------------------------SWVL--------------------------   91 (181)
Q Consensus        78 ~i~d~~~~~~----------------------------------------~~v~--------------------------   91 (181)
                      .+||+.+...                                        ..+.                          
T Consensus       134 ~v~d~~~~~~~~~~i~~~~~~~v~~~p~~~~~~~~~~~dg~~~~v~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  213 (361)
T 2oiz_A          134 GIVDVAKGDYVEDVTAAAGCWSVIPQPNRPRSFMTICGDGGLLTINLGEDGKVASQSRSKQMFSVKDDPIFIAPALDKDK  213 (361)
T ss_dssp             EEEETTTTEEEEEEGGGTTEEEEEECTTSSSEEEEEETTSSEEEEEECTTSSEEEEEECCCCSCTTTSCBCSCCEECSSE
T ss_pred             EEEECCCCcEEEEEecCCCcceeEEcCCCCeeEEEECCCCcEEEEEECCCCcEeeeccccceEcCCCCceEEEecccCCE
Confidence            8887632100                                        0000                          


Q ss_pred             --------------------------------------------EEEEcCCCCEEEEEeC-----------CCcEEEEec
Q psy10953         92 --------------------------------------------STAFTRDGKFFISASA-----------DHTVRVWNF  116 (181)
Q Consensus        92 --------------------------------------------~~~~s~~~~~l~~~~~-----------d~~i~v~d~  116 (181)
                                                                  .++|+|+++.+..+..           ...|.+||+
T Consensus       214 ~~~~~~~~~v~v~d~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~a~~~dg~~lyv~~~~~~~~~~~~~~~~~v~viD~  293 (361)
T 2oiz_A          214 AHFVSYYGNVYSADFSGDEVKVDGPWSLLNDEDKAKNWVPGGYNLVGLHRASGRMYVFMHPDGKEGTHKFPAAEIWVMDT  293 (361)
T ss_dssp             EEEEBTTSEEEEEECSSSSCEEEEEEESCCHHHHHTTCEECCSSCEEEETTTTEEEEEEESSCCTTCTTCCCSEEEEEET
T ss_pred             EEEEeCCCeEEEEEecCCCceecccccccCccccccccccCCeeEEEEecCCCeEEEEEccCCCcccccCCCceEEEEEC
Confidence                                                        0466777665544332           347999999


Q ss_pred             CCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC--eeEEEc
Q psy10953        117 ARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE--EEVEVN  166 (181)
Q Consensus       117 ~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~--~~~~~~  166 (181)
                      .+++.+..+.... +++++|+|||+++++++. +.|.+||..++  +.+...
T Consensus       294 ~t~~~v~~i~~~~-p~~ia~spdg~~l~v~n~-~~v~v~D~~t~~l~~~~~i  343 (361)
T 2oiz_A          294 KTKQRVARIPGRD-ALSMTIDQQRNLMLTLDG-GNVNVYDISQPEPKLLRTI  343 (361)
T ss_dssp             TTTEEEEEEECTT-CCEEEEETTTTEEEEECS-SCEEEEECSSSSCEEEEEE
T ss_pred             CCCcEEEEEecCC-eeEEEECCCCCEEEEeCC-CeEEEEECCCCcceeeEEe
Confidence            9998888887555 999999999999998886 99999999999  877653

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.61  E-value=2.3e-13  Score=100.63  Aligned_cols=146  Identities=10%  Similarity=0.258  Sum_probs=111.7

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec--CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT--RGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      ..+.+++++|+|+++++...++.|.+||.. ++....+..  .......++++++|+.+++...++.|++||....    
T Consensus       121 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~  199 (286)
T 1q7f_A          121 QHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQ  199 (286)
T ss_dssp             SCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEE
T ss_pred             CCceEEEEeCCCCEEEEECCCCEEEEEcCC-CCEEEEeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCCCCEEEE
Confidence            346889999999988887788999999964 565555542  2234568999999998777778899999997532    


Q ss_pred             -----CcccEEEEEEcCCCCEEEEEeCCC-cEEEEecCCCceeeeee-c--CCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         86 -----HSSWVLSTAFTRDGKFFISASADH-TVRVWNFARRENMHTFK-H--ADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        86 -----~~~~v~~~~~s~~~~~l~~~~~d~-~i~v~d~~~~~~~~~~~-~--~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                           +...+..++++|+|+++++...++ .|++||.. ++.+..+. +  ...+.+++++|+|+.+++ +.++.|++|+
T Consensus       200 ~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~~i~~~~~g~l~vs-~~~~~v~v~~  277 (286)
T 1q7f_A          200 IGGEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQD-GQLISALESKVKHAQCFDVALMDDGSVVLA-SKDYRLYIYR  277 (286)
T ss_dssp             ESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECTT-SCEEEEEEESSCCSCEEEEEEETTTEEEEE-ETTTEEEEEE
T ss_pred             EccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEECCC-CCEEEEEcccCCCCcceeEEECCCCcEEEE-CCCCeEEEEE
Confidence                 124688999999999888887775 99999964 44455543 2  234789999999987776 5689999999


Q ss_pred             CCCC
Q psy10953        157 YKPE  160 (181)
Q Consensus       157 ~~~~  160 (181)
                      +...
T Consensus       278 ~~~~  281 (286)
T 1q7f_A          278 YVQL  281 (286)
T ss_dssp             CSCC
T ss_pred             cccc
Confidence            8654

>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}

Probab=99.60  E-value=1.1e-13  Score=106.23  Aligned_cols=149  Identities=13%  Similarity=0.106  Sum_probs=109.3

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE--EEECCCCCEEEEe---------------------
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLS--IAYSTDGHWIASG---------------------   71 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~--~~~s~d~~~l~~~---------------------   71 (181)
                      ..++|||||++|+.++.++.|++||+.+++...++..+......  +.++++++.++..                     
T Consensus        84 ~~~~~spdg~~l~~~~~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~  163 (388)
T 3pe7_A           84 FGGFLSPDDDALFYVKDGRNLMRVDLATLEENVVYQVPAEWVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYF  163 (388)
T ss_dssp             SSCEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGG
T ss_pred             cceEEcCCCCEEEEEeCCCeEEEEECCCCcceeeeechhhcccccceeECCCCCeeccccccCcccccccccchhhhhhc
Confidence            35789999999999999999999999999887776665554432  3459999988742                     


Q ss_pred             -eCCCcEEEEeCCCCC-------cccEEEEEEcC-CCCEEEEEeCC------CcEEEEecCCCceeeeeecC--CcEEEE
Q psy10953         72 -ALDGIINIFDANTGH-------SSWVLSTAFTR-DGKFFISASAD------HTVRVWNFARRENMHTFKHA--DQVWCV  134 (181)
Q Consensus        72 -~~d~~v~i~d~~~~~-------~~~v~~~~~s~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~--~~v~~~  134 (181)
                       ..+..+++||+.++.       ...+..++|+| +|+.++.+..+      ..|.++|...+.......+.  ..+...
T Consensus       164 ~~~~~~l~~~d~~~g~~~~l~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~  243 (388)
T 3pe7_A          164 TKPCCRLMRVDLKTGESTVILQENQWLGHPIYRPYDDSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKTHAEGESCTHE  243 (388)
T ss_dssp             GCCCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCTTTSSCSEEEEETTSCCCEESCCCCTTEEEEEE
T ss_pred             cCCcceEEEEECCCCceEEeecCCccccccEECCCCCCEEEEEEecCCCCCcceEEEEeCCCCceEEeeeCCCCcccccc
Confidence             234679999988654       23467889999 99988777653      37888887665433333333  247788


Q ss_pred             EEccCCCEEEEEcC-C-C---cEEEEeCCCCeeE
Q psy10953        135 CVAPDGDKFVSVGE-D-K---AVHMYSYKPEEEV  163 (181)
Q Consensus       135 ~~sp~g~~l~~~~~-d-~---~v~i~~~~~~~~~  163 (181)
                      +|||||+.|+..+. + +   .|++|++.+++..
T Consensus       244 ~~spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~  277 (388)
T 3pe7_A          244 FWVPDGSALVYVSYLKGSPDRFIYSADPETLENR  277 (388)
T ss_dssp             EECTTSSCEEEEEEETTCCCEEEEEECTTTCCEE
T ss_pred             eECCCCCEEEEEecCCCCCcceEEEEecCCCceE
Confidence            99999998766553 2 2   3999999887643

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.59  E-value=7.5e-13  Score=99.80  Aligned_cols=153  Identities=14%  Similarity=0.122  Sum_probs=112.2

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC----CcEEEEeC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD----GIINIFDA   82 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d----~~v~i~d~   82 (181)
                      +..+.....+++|+|+|++++++..++.|.+||..+++...........+.+++++++|+++++...+    +.+.+||.
T Consensus        40 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~  119 (333)
T 2dg1_A           40 ISKKGLQLEGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATE  119 (333)
T ss_dssp             EESSCCCEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECT
T ss_pred             EeccCccccCcEECCCCCEEEEECCCCEEEEEeCCCCcEEEEeeCCCCCcceEEECCCCcEEEEeCCCCCCCceEEEEeC
Confidence            33344456789999999988888889999999999888776554444557789999999987776666    68999997


Q ss_pred             CCCC----------cccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE-E
Q psy10953         83 NTGH----------SSWVLSTAFTRDGKFFISASA------DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV-S  145 (181)
Q Consensus        83 ~~~~----------~~~v~~~~~s~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~  145 (181)
                      .++.          ...+..++++|+|+++++...      .+.|..+|..+++..........+.+++++|+|+.++ +
T Consensus       120 ~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~  199 (333)
T 2dg1_A          120 NGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVT  199 (333)
T ss_dssp             TSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEE
T ss_pred             CCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCCCcccceEECCCCCEEEEE
Confidence            6432          235788999999998877654      2456667665544332223334578999999998665 4


Q ss_pred             EcCCCcEEEEeCCC
Q psy10953        146 VGEDKAVHMYSYKP  159 (181)
Q Consensus       146 ~~~d~~v~i~~~~~  159 (181)
                      .+.++.|.+|+..+
T Consensus       200 ~~~~~~i~~~d~~~  213 (333)
T 2dg1_A          200 ETTANRLHRIALED  213 (333)
T ss_dssp             EGGGTEEEEEEECT
T ss_pred             eCCCCeEEEEEecC
Confidence            45678999999864

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.57  E-value=9.9e-13  Score=97.80  Aligned_cols=152  Identities=14%  Similarity=0.086  Sum_probs=112.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +..+........+++|+|+|+ +++++..++.|..|+..++  ...+......+.+++++++|+++++...++.|.+||.
T Consensus        20 ~~~l~~~~~~~eg~~~d~~g~~l~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~   97 (296)
T 3e5z_A           20 ARRLADGFTWTEGPVYVPARSAVIFSDVRQNRTWAWSDDGQ--LSPEMHPSHHQNGHCLNKQGHLIACSHGLRRLERQRE   97 (296)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEEGGGTEEEEEETTSC--EEEEESSCSSEEEEEECTTCCEEEEETTTTEEEEECS
T ss_pred             EEEEecCCccccCCeEeCCCCEEEEEeCCCCEEEEEECCCC--eEEEECCCCCcceeeECCCCcEEEEecCCCeEEEEcC
Confidence            344555555567899999998 7788888999999999877  4455555555678999999998877777789999998


Q ss_pred             CCCCc------------ccEEEEEEcCCCCEEEEE----e-------------CCCcEEEEecCCCceeeeeecCCcEEE
Q psy10953         83 NTGHS------------SWVLSTAFTRDGKFFISA----S-------------ADHTVRVWNFARRENMHTFKHADQVWC  133 (181)
Q Consensus        83 ~~~~~------------~~v~~~~~s~~~~~l~~~----~-------------~d~~i~v~d~~~~~~~~~~~~~~~v~~  133 (181)
                      .++..            ..+..++++|+|+++++.    +             ..+.|..++.. ++..........+.+
T Consensus        98 ~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~~~~g  176 (296)
T 3e5z_A           98 PGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIRDRVKPNG  176 (296)
T ss_dssp             TTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEECCCSSEEE
T ss_pred             CCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeecCCCCCcc
Confidence            65431            134568999999988873    2             12456666655 333322334556789


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      ++|+|+|+.+++.+.++.|.+|++.
T Consensus       177 i~~s~dg~~lv~~~~~~~i~~~~~~  201 (296)
T 3e5z_A          177 LAFLPSGNLLVSDTGDNATHRYCLN  201 (296)
T ss_dssp             EEECTTSCEEEEETTTTEEEEEEEC
T ss_pred             EEECCCCCEEEEeCCCCeEEEEEEC
Confidence            9999999999777778999999986

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.53  E-value=1.2e-12  Score=108.63  Aligned_cols=147  Identities=15%  Similarity=0.201  Sum_probs=106.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCc-----------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSG-----KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI-----------   76 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~-----------   76 (181)
                      .+..++|||||++|+.+..++     +|++||+.+++.......... +..++|+|||+.|+.++.++.           
T Consensus       126 ~~~~~~~SPDg~~la~~~~~~G~~~~~i~v~d~~tg~~~~~~~~~~~-~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~  204 (710)
T 2xdw_A          126 ALRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETST  204 (710)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCC
T ss_pred             EEEEEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCcccccCcc-cceEEEEeCCCEEEEEEECCcccccccccccc
Confidence            467899999999998766543     899999999987764322222 346899999999999887765           


Q ss_pred             -----EEEEeCCCCC------------cccEEEEEEcCCCCEEEEEeC-----CCcEEEEecCC------Cc-eeeeee-
Q psy10953         77 -----INIFDANTGH------------SSWVLSTAFTRDGKFFISASA-----DHTVRVWNFAR------RE-NMHTFK-  126 (181)
Q Consensus        77 -----v~i~d~~~~~------------~~~v~~~~~s~~~~~l~~~~~-----d~~i~v~d~~~------~~-~~~~~~-  126 (181)
                           |++|++.++.            ...+..+.|+|+|++|+..+.     +..|++||+.+      +. ....+. 
T Consensus       205 ~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~  284 (710)
T 2xdw_A          205 NLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSIREGCDPVNRLWYCDLQQESNGITGILKWVKLID  284 (710)
T ss_dssp             CCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEEC
T ss_pred             CCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEEEccCCCccEEEEEECcccccccCCccceEEeeC
Confidence                 9999986532            234678999999998877664     56799999876      42 233333 


Q ss_pred             cCCcEEEEEEccCCCEEEEEcCC----CcEEEEeCCCCe
Q psy10953        127 HADQVWCVCVAPDGDKFVSVGED----KAVHMYSYKPEE  161 (181)
Q Consensus       127 ~~~~v~~~~~sp~g~~l~~~~~d----~~v~i~~~~~~~  161 (181)
                      +...+.. .++|+|+.|+..+..    ..|.+|++..+.
T Consensus       285 ~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~  322 (710)
T 2xdw_A          285 NFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPE  322 (710)
T ss_dssp             SSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             CCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            4444443 588999988766643    368999987653

>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*

Probab=99.53  E-value=7.5e-13  Score=100.26  Aligned_cols=146  Identities=18%  Similarity=0.291  Sum_probs=110.5

Q ss_pred             eEEEEEEcC-CCCEEEEEe-CCCcEEEEeCCCCcEEEEEecCC----------ceEEEEEECCC-CCEEEEeeCCCcEEE
Q psy10953         13 DMWNVVFSP-DDKYVLSGS-QSGKINLYGVETGKLEQIFDTRG----------KFTLSIAYSTD-GHWIASGALDGIINI   79 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~s~d-~~~l~~~~~d~~v~i   79 (181)
                      ....++++| +|+++++.+ .++.|++|+ .+++....+...+          .....++++|+ +.++++...++.|.+
T Consensus       144 ~P~~ia~~~~~g~lyv~d~~~~~~I~~~~-~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~~~~I~~  222 (329)
T 3fvz_A          144 QPTDVAVEPSTGAVFVSDGYCNSRIVQFS-PSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRENGRIQC  222 (329)
T ss_dssp             SEEEEEECTTTCCEEEEECSSCCEEEEEC-TTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CCcEEEEeCCCCeEEEEeCCCCCeEEEEc-CCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECCCCEEEE
Confidence            468999999 788888876 689999999 5677766664322          12568999999 677777778899999


Q ss_pred             EeCCCC----------CcccEEEEEEcC------CCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccC
Q psy10953         80 FDANTG----------HSSWVLSTAFTR------DGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPD  139 (181)
Q Consensus        80 ~d~~~~----------~~~~v~~~~~s~------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~  139 (181)
                      ||..++          +...+..++|+|      +|+.+++...+..|++||+.+++.+..+.    +...+.+++++|+
T Consensus       223 ~~~~~G~~~~~~~~~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~~~~~~~~p~~ia~~~d  302 (329)
T 3fvz_A          223 FKTDTKEFVREIKHASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKPVRKHFDMPHDIVASED  302 (329)
T ss_dssp             EETTTCCEEEEECCTTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECCSSSCCSSEEEEEECTT
T ss_pred             EECCCCcEEEEEeccccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcCCCCccCCeeEEEECCC
Confidence            998743          234577888999      33333333344589999999988877763    4456899999999


Q ss_pred             CCEEEEEcCCCcEEEEeCCC
Q psy10953        140 GDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       140 g~~l~~~~~d~~v~i~~~~~  159 (181)
                      |+.+++...++.|++|+...
T Consensus       303 G~lyvad~~~~~I~~~~~~~  322 (329)
T 3fvz_A          303 GTVYIGDAHTNTVWKFTLTE  322 (329)
T ss_dssp             SEEEEEESSSCCEEEEEEEE
T ss_pred             CCEEEEECCCCEEEEEeCCc
Confidence            98888888899999999753

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.52  E-value=6.9e-13  Score=101.73  Aligned_cols=154  Identities=16%  Similarity=0.173  Sum_probs=102.5

Q ss_pred             cCeeeEEEEEEcC-CCCEEEEEeCC------CcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCC-----C
Q psy10953          9 VGPVDMWNVVFSP-DDKYVLSGSQS------GKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALD-----G   75 (181)
Q Consensus         9 ~~~~~~~~~~~s~-~g~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d-----~   75 (181)
                      .+...+..++|+| +|++|+..+.+      ..|.+||+.+++...+.... ...+..+.|+|||++|+.++.+     +
T Consensus       185 ~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~  264 (396)
T 3c5m_A          185 QDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFWIPDGSAMAYVSYFKGQTDR  264 (396)
T ss_dssp             EESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEECTTSSCEEEEEEETTTCCE
T ss_pred             cCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEECCCCCEEEEEecCCCCccc
Confidence            3444577899999 88877766543      46888998777655444322 3345678999999988776543     4


Q ss_pred             cEEEEeCCCCCcccE-----EEEEEcC-CCCEEEEEe----------------CCCcEEEEecCCCceeeeeecCC----
Q psy10953         76 IINIFDANTGHSSWV-----LSTAFTR-DGKFFISAS----------------ADHTVRVWNFARRENMHTFKHAD----  129 (181)
Q Consensus        76 ~v~i~d~~~~~~~~v-----~~~~~s~-~~~~l~~~~----------------~d~~i~v~d~~~~~~~~~~~~~~----  129 (181)
                      .+++||+.++....+     ..+.|+| +|+++++++                .+..|++||+.+++......+..    
T Consensus       265 ~l~~~d~~~g~~~~l~~~~~~~~~~s~~dg~~l~~~~~~~p~~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~~~~~~~~  344 (396)
T 3c5m_A          265 VIYKANPETLENEEVMVMPPCSHLMSNFDGSLMVGDGCDAPVDVADADSYNIENDPFLYVLNTKAKSAQKLCKHSTSWDV  344 (396)
T ss_dssp             EEEEECTTTCCEEEEEECCSEEEEEECSSSSEEEEEECCC----------CCCCCCEEEEEETTTTBCCEEEECCCCCCC
T ss_pred             eEEEEECCCCCeEEeeeCCCCCCCccCCCCceEEEecCCcceeeccccccccCCCCcEEEEecccCceEEccCCCCcccc
Confidence            499999976542211     1278999 999888754                24689999998776433223333    


Q ss_pred             -------cEEEEEEccCCCEEEEEcC-CCcEEEE--eCCCCee
Q psy10953        130 -------QVWCVCVAPDGDKFVSVGE-DKAVHMY--SYKPEEE  162 (181)
Q Consensus       130 -------~v~~~~~sp~g~~l~~~~~-d~~v~i~--~~~~~~~  162 (181)
                             .+..++|+|+|+.|+.++. ++...+|  ++..+..
T Consensus       345 ~~~~~~~~~~~~~~s~dg~~l~~~s~~~~~~~l~~~~~~~~~~  387 (396)
T 3c5m_A          345 LDGDRQITHPHPSFTPNDDGVLFTSDFEGVPAIYIADVPESYK  387 (396)
T ss_dssp             BTTBSSTTCCCCEECTTSSEEEEEECTTSSCEEEEEECCTTCC
T ss_pred             ccccccCCCCCceEccCCCeEEEEecCCCCceEEEEEEccccc
Confidence                   2556789999999887765 4554554  4444433

>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1

Probab=99.52  E-value=1.1e-11  Score=91.58  Aligned_cols=149  Identities=14%  Similarity=0.273  Sum_probs=112.0

Q ss_pred             eeEEEEEE-cCCCCEEEEEeC-CCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC----
Q psy10953         12 VDMWNVVF-SPDDKYVLSGSQ-SGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALDGIINIFDANT----   84 (181)
Q Consensus        12 ~~~~~~~~-s~~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~----   84 (181)
                      ..+..+++ .++|+++++... ++.|.+|| .+++....+... ......++++++|+.+++...++.|.+||...    
T Consensus        77 ~~p~~i~~~~~~g~l~v~~~~~~~~i~~~d-~~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~  155 (286)
T 1q7f_A           77 LYPNRVAVVRNSGDIIVTERSPTHQIQIYN-QYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQNGNVLH  155 (286)
T ss_dssp             SSEEEEEEETTTTEEEEEECGGGCEEEEEC-TTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEE
T ss_pred             cCceEEEEEcCCCeEEEEcCCCCCEEEEEC-CCCcEEEEecCccCCCceEEEEeCCCCEEEEECCCCEEEEEcCCCCEEE
Confidence            34678999 577776666643 88999999 567766655432 23456899999999888777788999999653    


Q ss_pred             -----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC---CcEEEEEEccCCCEEEEEcCCC-cEEEE
Q psy10953         85 -----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA---DQVWCVCVAPDGDKFVSVGEDK-AVHMY  155 (181)
Q Consensus        85 -----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~---~~v~~~~~sp~g~~l~~~~~d~-~v~i~  155 (181)
                           .+...+..++++|+|+++++...++.|++||.. +..+..+...   ..+.+++++|+|+.+++...++ .|.+|
T Consensus       156 ~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~g~~~~p~~i~~d~~G~l~v~~~~~~~~i~~~  234 (286)
T 1q7f_A          156 KFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYE-GQYLRQIGGEGITNYPIGVGINSNGEILIADNHNNFNLTIF  234 (286)
T ss_dssp             EEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETT-CCEEEEESCTTTSCSEEEEEECTTCCEEEEECSSSCEEEEE
T ss_pred             EeCCCCccCCcEEEEECCCCCEEEEECCCCEEEEEcCC-CCEEEEEccCCccCCCcEEEECCCCCEEEEeCCCCEEEEEE
Confidence                 223457899999999988888888999999974 3444455322   4688999999999888888776 99999


Q ss_pred             eCCCCeeE
Q psy10953        156 SYKPEEEV  163 (181)
Q Consensus       156 ~~~~~~~~  163 (181)
                      +.. ++.+
T Consensus       235 ~~~-g~~~  241 (286)
T 1q7f_A          235 TQD-GQLI  241 (286)
T ss_dssp             CTT-SCEE
T ss_pred             CCC-CCEE
Confidence            964 4433

>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}

Probab=99.50  E-value=1.2e-13  Score=106.06  Aligned_cols=149  Identities=13%  Similarity=0.092  Sum_probs=106.3

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEE-------------------EEECCCCCEEEEe-----e
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLS-------------------IAYSTDGHWIASG-----A   72 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~-------------------~~~s~d~~~l~~~-----~   72 (181)
                      +.|+|||++|+.++.++.|++||+.+++...+...+......                   ..++|+++.++..     .
T Consensus        86 ~~~spdg~~l~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~spdg~~~~~~~~~~~~  165 (396)
T 3c5m_A           86 GFISTDERAFFYVKNELNLMKVDLETLEEQVIYTVDEEWKGYGTWVANSDCTKLVGIEILKRDWQPLTSWEKFAEFYHTN  165 (396)
T ss_dssp             CEECTTSSEEEEEETTTEEEEEETTTCCEEEEEECCTTEEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHHHTC
T ss_pred             ceECCCCCEEEEEEcCCcEEEEECCCCCcEEEEecccccCCCCCEEEeccCCccccccccccccCCCCcceeeeeeccCC
Confidence            779999999999999999999999998877666544333222                   3568888877654     4


Q ss_pred             CCCcEEEEeCCCCCc-------ccEEEEEEcC-CCCEEEEEeCC------CcEEEEecCCCceeeeeec--CCcEEEEEE
Q psy10953         73 LDGIINIFDANTGHS-------SWVLSTAFTR-DGKFFISASAD------HTVRVWNFARRENMHTFKH--ADQVWCVCV  136 (181)
Q Consensus        73 ~d~~v~i~d~~~~~~-------~~v~~~~~s~-~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~--~~~v~~~~~  136 (181)
                      .+..+++||+.++..       ..+..+.|+| +++.++..+.+      ..|.+||+..+.......+  ...+..++|
T Consensus       166 ~~~~l~~~d~~~g~~~~~~~~~~~~~~~~~sp~dg~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~~~~~~~~~~~~~  245 (396)
T 3c5m_A          166 PTCRLIKVDIETGELEVIHQDTAWLGHPIYRPFDDSTVGFCHEGPHDLVDARMWLVNEDGSNVRKIKEHAEGESCTHEFW  245 (396)
T ss_dssp             CCEEEEEEETTTCCEEEEEEESSCEEEEEEETTEEEEEEEEECSCSSSCSCCCEEEETTSCCCEESSCCCTTEEEEEEEE
T ss_pred             CcceEEEEECCCCcEEeeccCCcccccceECCCCCCEEEEEecCCCCCCCceEEEEECCCCceeEeeccCCCccccceEE
Confidence            567899999876542       3467789999 78876665543      3688888866543322222  225778999


Q ss_pred             ccCCCEEEEEcCC-----CcEEEEeCCCCeeEEE
Q psy10953        137 APDGDKFVSVGED-----KAVHMYSYKPEEEVEV  165 (181)
Q Consensus       137 sp~g~~l~~~~~d-----~~v~i~~~~~~~~~~~  165 (181)
                      +|||++|+.++.+     +.|++|++.+++...+
T Consensus       246 spdg~~l~~~~~~~~~~~~~l~~~d~~~g~~~~l  279 (396)
T 3c5m_A          246 IPDGSAMAYVSYFKGQTDRVIYKANPETLENEEV  279 (396)
T ss_dssp             CTTSSCEEEEEEETTTCCEEEEEECTTTCCEEEE
T ss_pred             CCCCCEEEEEecCCCCccceEEEEECCCCCeEEe
Confidence            9999988777543     3499999987765443

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.50  E-value=7e-13  Score=109.80  Aligned_cols=147  Identities=15%  Similarity=0.094  Sum_probs=102.5

Q ss_pred             eEEEEEEcCCCCEEEE-----EeCCCcEEEEeCCCCcEE-EEEecCCceEEEEEECCCCCEEEEeeCCCc----------
Q psy10953         13 DMWNVVFSPDDKYVLS-----GSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWIASGALDGI----------   76 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~-----~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~----------   76 (181)
                      .+..++|||||++||.     |+.+.+|++||+.+++.. ......... ..++|+|||+.|++++.|..          
T Consensus       122 ~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~tg~~~~~~~~~~~~~-~~~~wspDg~~l~~~~~d~~~~~~~~~~~~  200 (695)
T 2bkl_A          122 SLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVDSGEWSKVDVIEGGKY-ATPKWTPDSKGFYYEWLPTDPSIKVDERPG  200 (695)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSCCEEEEEETTTCCBCSSCCBSCCTT-CCCEECTTSSEEEEEECCCCTTSCGGGGGG
T ss_pred             EEEEEEECCCCCEEEEEECCCCCceEEEEEEECCCCCCcCCcccCcccc-cceEEecCCCEEEEEEecCCCCCccccCCC
Confidence            5788999999999983     444578999999999865 211111111 36899999999999988765          


Q ss_pred             ---EEEEeCCCCC------------cccEEEEEEcCCCCEEEEEeCCC----cEEEEecCCCceeeeeecCCcEEEEEEc
Q psy10953         77 ---INIFDANTGH------------SSWVLSTAFTRDGKFFISASADH----TVRVWNFARRENMHTFKHADQVWCVCVA  137 (181)
Q Consensus        77 ---v~i~d~~~~~------------~~~v~~~~~s~~~~~l~~~~~d~----~i~v~d~~~~~~~~~~~~~~~v~~~~~s  137 (181)
                         |++|++.++.            ...+..+.|||+|++|+..+.++    .|+++|..++.......+...+....+ 
T Consensus       201 ~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~-  279 (695)
T 2bkl_A          201 YTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLSRDGKYLFVYILRGWSENDVYWKRPGEKDFRLLVKGVGAKYEVHA-  279 (695)
T ss_dssp             GCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEECTTSCCEEEEEEETTTEEEEEEECTTCSSCEEEEECSSCCEEEEE-
T ss_pred             CCEEEEEECCCCchhceEEEecCCCCEEEEEEEECCCCCEEEEEEeCCCCceEEEEEcCCCCceEEeecCCCceEEEEe-
Confidence               9999986532            24677899999999888777655    677777655543333344455555555 


Q ss_pred             cCCCEEEEEc---CCCcEEEEeCCCCe
Q psy10953        138 PDGDKFVSVG---EDKAVHMYSYKPEE  161 (181)
Q Consensus       138 p~g~~l~~~~---~d~~v~i~~~~~~~  161 (181)
                      ++|++++...   .++.|.+|++.+++
T Consensus       280 ~~g~l~~~s~~~~~~~~l~~~d~~~~~  306 (695)
T 2bkl_A          280 WKDRFYVLTDEGAPRQRVFEVDPAKPA  306 (695)
T ss_dssp             ETTEEEEEECTTCTTCEEEEEBTTBCS
T ss_pred             cCCcEEEEECCCCCCCEEEEEeCCCCC
Confidence            6777444433   24789999987654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.49  E-value=4.4e-12  Score=95.92  Aligned_cols=145  Identities=16%  Similarity=0.260  Sum_probs=97.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCC---C--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC-------------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS---G--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD-------------   74 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d---~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d-------------   74 (181)
                      .+..++|||||++|+.++.+   +  .|.+|++.+++...+.....  +..+.|+|||+.|+.++.+             
T Consensus        60 ~~~~~~~SpDg~~la~~~~~~~~~~~~l~~~~~~~g~~~~l~~~~~--~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~  137 (347)
T 2gop_A           60 NATMPRISPDGKKIAFMRANEEKKVSEIWVADLETLSSKKILEAKN--IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDV  137 (347)
T ss_dssp             SCEEEEECTTSSEEEEEEEETTTTEEEEEEEETTTTEEEEEEEESE--EEEEEECTTSSEEEEEEECCCC---------C
T ss_pred             cCCCeEECCCCCEEEEEEeccCCCcceEEEEECCCCceEEEEcCCC--ccceeECCCCCEEEEEEccCCCcCCcEEEccc
Confidence            45779999999999887654   2  38888998888776665443  6789999999999887642             


Q ss_pred             --------------CcEEEEeCCCCCc-c-----cEEEEEEcCCCCEEEEEeCCC-------cEEEEecCCCceeeeeec
Q psy10953         75 --------------GIINIFDANTGHS-S-----WVLSTAFTRDGKFFISASADH-------TVRVWNFARRENMHTFKH  127 (181)
Q Consensus        75 --------------~~v~i~d~~~~~~-~-----~v~~~~~s~~~~~l~~~~~d~-------~i~v~d~~~~~~~~~~~~  127 (181)
                                    ..+++||+.++.. .     .+..++|+|+| +++++..+.       ...+|.+.+++......+
T Consensus       138 ~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~~~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~  216 (347)
T 2gop_A          138 PAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEKPRFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK  216 (347)
T ss_dssp             CCC---------CEEEEEEEETTTTEEEEEEEEETTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE
T ss_pred             ceeecCcccccCccceEEEEECCCCeEEeeecCCCcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC
Confidence                          5788999876543 2     34467899999 777776542       334443334433222233


Q ss_pred             CCcEEEEEEccCCCEEEEEcCC--------CcEEEEeCCCCeeEEE
Q psy10953        128 ADQVWCVCVAPDGDKFVSVGED--------KAVHMYSYKPEEEVEV  165 (181)
Q Consensus       128 ~~~v~~~~~sp~g~~l~~~~~d--------~~v~i~~~~~~~~~~~  165 (181)
                       ..+..+  +|||+.|+.++.+        ..|.+|+  +++...+
T Consensus       217 -~~~~~~--spdg~~l~~~~~~~~~~~~~~~~l~~~d--~~~~~~l  257 (347)
T 2gop_A          217 -VSFYAV--DSDGERILLYGKPEKKYMSEHNKLYIYD--GKEVMGI  257 (347)
T ss_dssp             -ESEEEE--EECSSCEEEEECCSSSCCCSSCEEEEEC--SSCEEES
T ss_pred             -cceeeE--CCCCCEEEEEEccccCCccccceEEEEC--CCceEec
Confidence             344443  9999998877744        3577777  4444333

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.47  E-value=7.2e-12  Score=92.94  Aligned_cols=150  Identities=12%  Similarity=0.097  Sum_probs=118.6

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeC-CCcEEEEeCCCC-----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGAL-DGIINIFDANTG-----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d~~~~-----   85 (181)
                      .+.+++++|+|++++  +.++.|..||. +++.+..+... ...+.++.+.++|+++++.+. ++.+..+|....     
T Consensus        38 ~~~~~~~~pdG~ilv--s~~~~V~~~d~-~G~~~W~~~~~~~~~~~~~~~~~dG~~lv~~~~~~~~v~~vd~~Gk~l~~~  114 (276)
T 3no2_A           38 ECNSVAATKAGEILF--SYSKGAKMITR-DGRELWNIAAPAGCEMQTARILPDGNALVAWCGHPSTILEVNMKGEVLSKT  114 (276)
T ss_dssp             CCCEEEECTTSCEEE--ECBSEEEEECT-TSCEEEEEECCTTCEEEEEEECTTSCEEEEEESTTEEEEEECTTSCEEEEE
T ss_pred             CCcCeEECCCCCEEE--eCCCCEEEECC-CCCEEEEEcCCCCccccccEECCCCCEEEEecCCCCEEEEEeCCCCEEEEE
Confidence            467889999999888  34788999998 89888777654 245668899999999998776 777777775321     


Q ss_pred             --------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 --------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 --------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                              +......+++.++|+++++...++.|..||.. ++.+.++.....+.++.+.++|+.+++++.++.|..++.
T Consensus       115 ~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~w~~~~~~~~~~~~~~~~g~~~v~~~~~~~v~~~d~  193 (276)
T 3no2_A          115 EFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLLNSVKLSGTPFSSAFLDNGDCLVACGDAHCFVQLNL  193 (276)
T ss_dssp             EECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECSSCCCEEEECTTSCEEEECBTTSEEEEECT
T ss_pred             eccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEEEEEECCCCccceeEcCCCCEEEEeCCCCeEEEEeC
Confidence                    11123345678999999999999999999998 888888876667778889999999998888889999999


Q ss_pred             CCCeeEEEc
Q psy10953        158 KPEEEVEVN  166 (181)
Q Consensus       158 ~~~~~~~~~  166 (181)
                      .+++.+-..
T Consensus       194 ~tG~~~w~~  202 (276)
T 3no2_A          194 ESNRIVRRV  202 (276)
T ss_dssp             TTCCEEEEE
T ss_pred             cCCcEEEEe
Confidence            878776433

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.45  E-value=5.4e-11  Score=91.87  Aligned_cols=149  Identities=11%  Similarity=0.090  Sum_probs=108.2

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEEecC-------CceEEEEEECCCCCEEEEeeC--CCc
Q psy10953         16 NVVFSPDDKYVLSGS----------QSGKINLYGVETGKLEQIFDTR-------GKFTLSIAYSTDGHWIASGAL--DGI   76 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~s~d~~~l~~~~~--d~~   76 (181)
                      .+++||||+++++++          .++.|.+||..+.+....+...       +.....+.++|||++|+.++.  ++.
T Consensus        70 ~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~  149 (373)
T 2mad_H           70 NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPA  149 (373)
T ss_pred             CeEECCCCCEEEEEeccccccccCCCCCeEEEEECCCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCe
Confidence            899999999998886          3678999999988887766543       122347899999999988764  467


Q ss_pred             EEEEeCCCCCcccE------------------------------------------------------------------
Q psy10953         77 INIFDANTGHSSWV------------------------------------------------------------------   90 (181)
Q Consensus        77 v~i~d~~~~~~~~v------------------------------------------------------------------   90 (181)
                      |.++| .++.....                                                                  
T Consensus       150 v~viD-~t~~~~~~~i~~~~~~~~~~~~~~~~~~~~~dg~~~~vd~~g~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  228 (373)
T 2mad_H          150 VGLVV-QGGSSDDQLLSSPTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGRIV  228 (373)
T ss_pred             EEEEE-CCCCEEeEEcCCCceEEEEeCCCceEEEEcCCCCEEEEECCCcEEEEEeccccccCCcceeecceeEecCCEEE
Confidence            88888 54210000                                                                  


Q ss_pred             -----------------------------------------EEEEEcCCCCEEEEEeC----------CCcEEEEecCCC
Q psy10953         91 -----------------------------------------LSTAFTRDGKFFISASA----------DHTVRVWNFARR  119 (181)
Q Consensus        91 -----------------------------------------~~~~~s~~~~~l~~~~~----------d~~i~v~d~~~~  119 (181)
                                                               ..++++|+++.+.....          .+.|.++|+.++
T Consensus       229 ~~~~~~~v~vid~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~~~~s~d~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~  308 (373)
T 2mad_H          229 WPVYSGKILQADISAAGATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVG  308 (373)
T ss_pred             EEcCCceEEEEeccCCcceEeeeeeecCCcccccceecCceEeEEECCCCCEEEEEeccCCcccccCCCCeEEEEECCCC
Confidence                                                     00344555554443332          246888888888


Q ss_pred             ceeeeeecCCcEEEEEEccCCC-EEEEEc-CCCcEEEEeCCCCeeEEE
Q psy10953        120 ENMHTFKHADQVWCVCVAPDGD-KFVSVG-EDKAVHMYSYKPEEEVEV  165 (181)
Q Consensus       120 ~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~v~i~~~~~~~~~~~  165 (181)
                      +.+..+......++++|+|||+ .++++. .++.|.+||..+++.+..
T Consensus       309 ~vv~~i~~g~~p~~i~~s~Dg~~~l~v~~~~~~~V~ViD~~t~~vv~~  356 (373)
T 2mad_H          309 QTSSQISLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAGAGDQDQS  356 (373)
T ss_pred             EEEEEEECCCCcCeEEECCCCCeEEEEEcCCCCeEEEEECCCCCEEee
Confidence            8888887666789999999999 777776 489999999999888765

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.45  E-value=7.8e-12  Score=91.37  Aligned_cols=151  Identities=8%  Similarity=0.016  Sum_probs=112.3

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG------   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~------   85 (181)
                      ..+..++++|+|+++++...++.|..|+..+...............+++++++|+.+++...++.|.+||....      
T Consensus       108 ~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  187 (270)
T 1rwi_B          108 NYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLP  187 (270)
T ss_dssp             SSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECCCCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECC
T ss_pred             CCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeeccccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeec
Confidence            45689999999997777777889999976554433221112123457899999997777777889999998643      


Q ss_pred             --CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         86 --HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        86 --~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                        ....+..++++++|+++++...++.|.+||.......... .....+.+++++|+|+.+++...++.|++++....+.
T Consensus       188 ~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~v~~~~~~~~~~  267 (270)
T 1rwi_B          188 FTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTSLEHHH  267 (270)
T ss_dssp             CSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCCEECCCCSCSCEEEEEECTTCCEEEEEGGGTEEEEECCCGGGS
T ss_pred             ccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcceeeccCCCCCceeEEECCCCCEEEEECCCCEEEEEcCCCccc
Confidence              1245788999999988888877889999998765433221 1235689999999999888888899999999876543

>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}

Probab=99.44  E-value=5.2e-11  Score=88.44  Aligned_cols=153  Identities=14%  Similarity=0.151  Sum_probs=108.1

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC----ceEEEEEECCCCCEEEE----ee-------
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG----KFTLSIAYSTDGHWIAS----GA-------   72 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~----~~~~~~~~s~d~~~l~~----~~-------   72 (181)
                      ......+..++++|+|+++++...++.|.+||..+++.........    ..+..++++|+|+++++    +.       
T Consensus        65 ~~~~~~~~~l~~~~dg~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~  144 (296)
T 3e5z_A           65 MHPSHHQNGHCLNKQGHLIACSHGLRRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGY  144 (296)
T ss_dssp             ESSCSSEEEEEECTTCCEEEEETTTTEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSS
T ss_pred             ECCCCCcceeeECCCCcEEEEecCCCeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccc
Confidence            3344457899999999988887778899999998888765443211    12346899999998886    32       


Q ss_pred             ------CCCcEEEEeCCC------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecC-CCce---eeeee-cCCcEEEEE
Q psy10953         73 ------LDGIINIFDANT------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFA-RREN---MHTFK-HADQVWCVC  135 (181)
Q Consensus        73 ------~d~~v~i~d~~~------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~-~~~~---~~~~~-~~~~v~~~~  135 (181)
                            ..+.+..++...      .....+..++|+|+|+.+++.+.++.|++||+. ++..   ...+. ....+.+++
T Consensus       145 ~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~gi~~s~dg~~lv~~~~~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~~i~  224 (296)
T 3e5z_A          145 GGEMELPGRWVFRLAPDGTLSAPIRDRVKPNGLAFLPSGNLLVSDTGDNATHRYCLNARGETEYQGVHFTVEPGKTDGLR  224 (296)
T ss_dssp             CCCCCSSSCEEEEECTTSCEEEEECCCSSEEEEEECTTSCEEEEETTTTEEEEEEECSSSCEEEEEEEECCSSSCCCSEE
T ss_pred             cccccCCCcEEEEECCCCCEEEeecCCCCCccEEECCCCCEEEEeCCCCeEEEEEECCCCcCcCCCeEeeCCCCCCCeEE
Confidence                  134666676641      123456889999999988777778899999986 3333   12221 334567899


Q ss_pred             EccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        136 VAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       136 ~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ++++|+.+++.  ++.|.+|+.. ++.+
T Consensus       225 ~d~~G~l~v~~--~~~v~~~~~~-g~~~  249 (296)
T 3e5z_A          225 VDAGGLIWASA--GDGVHVLTPD-GDEL  249 (296)
T ss_dssp             EBTTSCEEEEE--TTEEEEECTT-SCEE
T ss_pred             ECCCCCEEEEc--CCeEEEECCC-CCEE
Confidence            99999877666  7899999986 4444

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.43  E-value=4.8e-12  Score=98.02  Aligned_cols=136  Identities=10%  Similarity=0.131  Sum_probs=104.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCc---------EE--EEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGK---------LE--QIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~---------~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d   81 (181)
                      .+..+++++...++++|+.+ .+++|+++..+         ..  ..... .. +..++|  |+++|+++ .++.+++||
T Consensus        39 ~~nlLais~~~gll~a~~~~-~l~v~~~~~l~~~~~~~~~~~~~~~~~~l-p~-V~~l~f--d~~~L~v~-~~~~l~v~d  112 (388)
T 1xip_A           39 SLQNLDISNSKSLFVAASGS-KAVVGELQLLRDHITSDSTPLTFKWEKEI-PD-VIFVCF--HGDQVLVS-TRNALYSLD  112 (388)
T ss_dssp             CCBCEEEETTTTEEEEEETT-EEEEEEHHHHHHHHHSSSCCCCCSEEEEC-TT-EEEEEE--ETTEEEEE-ESSEEEEEE
T ss_pred             cccEEEEcCCCCEEEEeCCC-EEEEEEhhHhhhhhccccccccceEEeeC-CC-eeEEEE--CCCEEEEE-cCCcEEEEE
Confidence            47889999999999999988 55569865333         11  22332 33 778999  99999988 889999999


Q ss_pred             CCCC--------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         82 ANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        82 ~~~~--------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                      +...        +...+..+.+.+.  .++.++.||.+++||++++....   +...|.+++|||+|  ++.|..||.++
T Consensus       113 v~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~---~~~~Vs~v~WSpkG--~~vg~~dg~i~  185 (388)
T 1xip_A          113 LEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQ---LAQNVTSFDVTNSQ--LAVLLKDRSFQ  185 (388)
T ss_dssp             SSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEE---EEESEEEEEECSSE--EEEEETTSCEE
T ss_pred             chhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCcccc---ccCCceEEEEcCCc--eEEEEcCCcEE
Confidence            8643        2334666666654  28888999999999999776542   34579999999999  67789999999


Q ss_pred             EEeCCCCe
Q psy10953        154 MYSYKPEE  161 (181)
Q Consensus       154 i~~~~~~~  161 (181)
                      +|+...++
T Consensus       186 ~~~~~~~~  193 (388)
T 1xip_A          186 SFAWRNGE  193 (388)
T ss_dssp             EEEEETTE
T ss_pred             EEcCCCcc
Confidence            99887666

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.42  E-value=3.7e-11  Score=91.02  Aligned_cols=147  Identities=12%  Similarity=0.072  Sum_probs=108.2

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC-----ceEEEEEECCCCCEEEEee--CCCcEEEEeCCC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG-----KFTLSIAYSTDGHWIASGA--LDGIINIFDANT   84 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----~~~~~~~~s~d~~~l~~~~--~d~~v~i~d~~~   84 (181)
                      .....++++++|+..++...++.|.+||..+++....+....     .....+++  ++..++.+.  .++.|.++|+.+
T Consensus        84 ~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~g~~~~~~~~p~~i~~--~~~~lyv~~~~~~~~v~viD~~t  161 (328)
T 3dsm_A           84 TSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIECPDMDMESGSTEQMVQ--YGKYVYVNCWSYQNRILKIDTET  161 (328)
T ss_dssp             SSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEECTTCCTTTCBCCCEEE--ETTEEEEEECTTCCEEEEEETTT
T ss_pred             CCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEcCCccccCCCcceEEE--ECCEEEEEcCCCCCEEEEEECCC
Confidence            456889999999544454489999999999999887665433     02335666  444455444  488999999976


Q ss_pred             CCc-------ccEEEEEEcCCCCEEEEEeCC----------CcEEEEecCCCceeeeeec--CCcEEEEEEccCCCEEEE
Q psy10953         85 GHS-------SWVLSTAFTRDGKFFISASAD----------HTVRVWNFARRENMHTFKH--ADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        85 ~~~-------~~v~~~~~s~~~~~l~~~~~d----------~~i~v~d~~~~~~~~~~~~--~~~v~~~~~sp~g~~l~~  145 (181)
                      +..       .....++++|+|++++++..+          +.|+++|..+++....+..  ...++.++++|+++++++
T Consensus       162 ~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~v~~~~~~~~g~~p~~la~~~d~~~lyv  241 (328)
T 3dsm_A          162 DKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFTVEKQFKFKLGDWPSEVQLNGTRDTLYW  241 (328)
T ss_dssp             TEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTEEEEEEECCTTCCCEEEEECTTSCEEEE
T ss_pred             CeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCCceEEEEECCCCeEEEEEecCCCCCceeEEEecCCCEEEE
Confidence            531       224567899999988777654          7899999998877666653  336889999999999988


Q ss_pred             EcCCCcEEEEeCCCCee
Q psy10953        146 VGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~~~  162 (181)
                      +..  .|.+||..+++.
T Consensus       242 ~~~--~v~~~d~~t~~~  256 (328)
T 3dsm_A          242 INN--DIWRMPVEADRV  256 (328)
T ss_dssp             ESS--SEEEEETTCSSC
T ss_pred             Ecc--EEEEEECCCCce
Confidence            765  899999877653

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.42  E-value=2.2e-10  Score=92.94  Aligned_cols=157  Identities=13%  Similarity=0.140  Sum_probs=116.6

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCC--CCcEEEEEecCCceEEEEEEC----CCCCEEEEeeC-CCcEE
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVE--TGKLEQIFDTRGKFTLSIAYS----TDGHWIASGAL-DGIIN   78 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~--~~~~~~~~~~~~~~~~~~~~s----~d~~~l~~~~~-d~~v~   78 (181)
                      .+..+.. +..+.|||||+++++++.|+.|.+||+.  +.+.+..+.... ....+.|+    |||+++++++. ++.+.
T Consensus       192 ~i~~g~~-p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~-~P~~ia~s~~~~pDGk~l~v~n~~~~~v~  269 (567)
T 1qks_A          192 VLDTGYA-VHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGS-EARSIETSKMEGWEDKYAIAGAYWPPQYV  269 (567)
T ss_dssp             EEECSSC-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCS-EEEEEEECCSTTCTTTEEEEEEEETTEEE
T ss_pred             EEeCCCC-ccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCC-CCceeEEccccCCCCCEEEEEEccCCeEE
Confidence            3444432 4589999999999999999999999995  777777665533 34689999    69999887665 58999


Q ss_pred             EEeCCCCC-------------------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCcee--eeeecCCcEEEEEE
Q psy10953         79 IFDANTGH-------------------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENM--HTFKHADQVWCVCV  136 (181)
Q Consensus        79 i~d~~~~~-------------------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~--~~~~~~~~v~~~~~  136 (181)
                      ++|..+.+                   ...+..+..++++. ++++...++.|.++|......+  ..+.......++.|
T Consensus       270 ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~~vd~~~~~~~~v~~i~~~~~~~d~~~  349 (567)
T 1qks_A          270 IMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGL  349 (567)
T ss_dssp             EEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEE
T ss_pred             EEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEEEEecCCCccceeeeeeccccccCceE
Confidence            99976432                   11456677788765 5556666799999998775432  23344456778999


Q ss_pred             ccCCCEEEEEc-CCCcEEEEeCCCCeeEE
Q psy10953        137 APDGDKFVSVG-EDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       137 sp~g~~l~~~~-~d~~v~i~~~~~~~~~~  164 (181)
                      +|+|+++++++ .++.|.++|..+++.+.
T Consensus       350 ~pdgr~~~va~~~sn~V~ViD~~t~kl~~  378 (567)
T 1qks_A          350 DGSHRYFITAANARNKLVVIDTKEGKLVA  378 (567)
T ss_dssp             CTTSCEEEEEEGGGTEEEEEETTTTEEEE
T ss_pred             CCCCCEEEEEeCCCCeEEEEECCCCcEEE
Confidence            99999987666 57899999999887654

>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}

Probab=99.40  E-value=2.4e-11  Score=90.08  Aligned_cols=141  Identities=12%  Similarity=0.106  Sum_probs=107.6

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEEeCCC--------CCcccEE
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIFDANT--------GHSSWVL   91 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~--------~~~~~v~   91 (181)
                      ..+++|++++.++.|.+||.++++.+..+..+. ..+.++.++|+|+.++  +.++.|..||...        +....+.
T Consensus         3 ~~~~~lv~~~~~~~v~~~d~~tG~~~w~~~~~~~~~~~~~~~~pdG~ilv--s~~~~V~~~d~~G~~~W~~~~~~~~~~~   80 (276)
T 3no2_A            3 SPQHLLVGGSGWNKIAIINKDTKEIVWEYPLEKGWECNSVAATKAGEILF--SYSKGAKMITRDGRELWNIAAPAGCEMQ   80 (276)
T ss_dssp             CCCEEEEECTTCSEEEEEETTTTEEEEEEECCTTCCCCEEEECTTSCEEE--ECBSEEEEECTTSCEEEEEECCTTCEEE
T ss_pred             CCCcEEEeeCCCCEEEEEECCCCeEEEEeCCCccCCCcCeEECCCCCEEE--eCCCCEEEECCCCCEEEEEcCCCCcccc
Confidence            356889999999999999999999988877654 2345788999999888  4467788888721        1223567


Q ss_pred             EEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeeec-------CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953         92 STAFTRDGKFFISASA-DHTVRVWNFARRENMHTFKH-------ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus        92 ~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~-------~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      .+++.|+|+.+++.+. ++.+..+|. +++.+..+..       ......+++.++|+++++...++.|..|+.. |+.+
T Consensus        81 ~~~~~~dG~~lv~~~~~~~~v~~vd~-~Gk~l~~~~~~~~~~~~~~~~~~v~~~~~G~~lv~~~~~~~v~~~d~~-G~~~  158 (276)
T 3no2_A           81 TARILPDGNALVAWCGHPSTILEVNM-KGEVLSKTEFETGIERPHAQFRQINKNKKGNYLVPLFATSEVREIAPN-GQLL  158 (276)
T ss_dssp             EEEECTTSCEEEEEESTTEEEEEECT-TSCEEEEEEECCSCSSGGGSCSCCEECTTSCEEEEETTTTEEEEECTT-SCEE
T ss_pred             ccEECCCCCEEEEecCCCCEEEEEeC-CCCEEEEEeccCCCCcccccccCceECCCCCEEEEecCCCEEEEECCC-CCEE
Confidence            8899999999998887 777888875 5666655531       1234566789999999999999999999987 6665


Q ss_pred             EE
Q psy10953        164 EV  165 (181)
Q Consensus       164 ~~  165 (181)
                      -.
T Consensus       159 w~  160 (276)
T 3no2_A          159 NS  160 (276)
T ss_dssp             EE
T ss_pred             EE
Confidence            43

>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A

Probab=99.39  E-value=4.7e-10  Score=84.41  Aligned_cols=153  Identities=10%  Similarity=0.137  Sum_probs=107.9

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcEEEEEe--cCCceEEEEEECCCCCEEEEeeC------CCcEE
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQS----GKINLYGVETGKLEQIFD--TRGKFTLSIAYSTDGHWIASGAL------DGIIN   78 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d----~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~d~~~l~~~~~------d~~v~   78 (181)
                      ...+.+++++|+|++++++..+    +.|.+||.++++....+.  .....+..+.++|+|+.+++...      .+.+.
T Consensus        86 ~~~~~~i~~~~dg~l~v~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~  165 (333)
T 2dg1_A           86 KANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVY  165 (333)
T ss_dssp             SSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEE
T ss_pred             CCCcceEEECCCCcEEEEeCCCCCCCceEEEEeCCCCEEEEEEccCccCCcccceEECCCCCEEEEeccccccCCCceEE
Confidence            3457899999999988777666    689999998887654443  12345678999999987776543      35677


Q ss_pred             EEeCCCCCc-------ccEEEEEEcCCCCEE-EEEeCCCcEEEEecCC-Cceeee-----e-ec--CCcEEEEEEccCCC
Q psy10953         79 IFDANTGHS-------SWVLSTAFTRDGKFF-ISASADHTVRVWNFAR-RENMHT-----F-KH--ADQVWCVCVAPDGD  141 (181)
Q Consensus        79 i~d~~~~~~-------~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~-~~~~~~-----~-~~--~~~v~~~~~sp~g~  141 (181)
                      .+|..++..       ..+..++|+|+|+.+ ++.+.++.|++||+.. +..+..     . ..  ...+.+++++++|+
T Consensus       166 ~~~~~~~~~~~~~~~~~~~~~i~~~~dg~~l~v~~~~~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~d~~G~  245 (333)
T 2dg1_A          166 YVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDN  245 (333)
T ss_dssp             EECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCC
T ss_pred             EEeCCCCEEEEeecCCCcccceEECCCCCEEEEEeCCCCeEEEEEecCCCcCcccccceEEEecCCCCCCCceEECCCCC
Confidence            777654321       246788999999854 5555678999999864 222211     1 11  13678899999999


Q ss_pred             EEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        142 KFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .+++...++.|.+|+.. ++.+.
T Consensus       246 l~v~~~~~~~v~~~d~~-g~~~~  267 (333)
T 2dg1_A          246 LYVAMYGQGRVLVFNKR-GYPIG  267 (333)
T ss_dssp             EEEEEETTTEEEEECTT-SCEEE
T ss_pred             EEEEEcCCCEEEEECCC-CCEEE
Confidence            88887778899999984 44443

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.39  E-value=5.7e-11  Score=99.08  Aligned_cols=145  Identities=15%  Similarity=0.134  Sum_probs=102.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCc-----------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI-----------   76 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~-----------   76 (181)
                      .+..++|||||++|+.+..+     .+|++||+.+++....... ......++|+|| +.|+.+..++.           
T Consensus       164 ~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~dl~tg~~~~~~~~-~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~  241 (741)
T 1yr2_A          164 ALDAWAASDDGRLLAYSVQDGGSDWRTVKFVGVADGKPLADELK-WVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNY  241 (741)
T ss_dssp             EEEEEEECTTSSEEEEEEEETTCSEEEEEEEETTTCCEEEEEEE-EEESCCCEESTT-SEEEEEECCCC--------CCC
T ss_pred             EEEeEEECCCCCEEEEEEcCCCCceEEEEEEECCCCCCCCccCC-CceeccEEEECC-CEEEEEEecCcccccccccCCC
Confidence            56789999999999877654     4699999999987654211 111136889999 99988876553           


Q ss_pred             ---EEEEeCCCCC------------cccEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCC--ceeeee-ecCCcEEE
Q psy10953         77 ---INIFDANTGH------------SSWVLSTAFTRDGKFFISASADH-----TVRVWNFARR--ENMHTF-KHADQVWC  133 (181)
Q Consensus        77 ---v~i~d~~~~~------------~~~v~~~~~s~~~~~l~~~~~d~-----~i~v~d~~~~--~~~~~~-~~~~~v~~  133 (181)
                         |++|++.++.            ...+..+.|||||++++..+.++     .|++||+.++  .....+ .+......
T Consensus       242 ~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~~  321 (741)
T 1yr2_A          242 NQTVWLHRLGTPQSADQPVFATPELPKRGHGASVSSDGRWVVITSSEGTDPVNTVHVARVTNGKIGPVTALIPDLKAQWD  321 (741)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEEECTTCSCCEEEEEEEETTEECCCEEEECSSSSCEE
T ss_pred             CCEEEEEECCCCchhCEEEeccCCCCeEEEEEEECCCCCEEEEEEEccCCCcceEEEEECCCCCCcccEEecCCCCceEE
Confidence               8899875431            12477899999999887776443     7999999776  313333 33334444


Q ss_pred             EEEccCCCEEEEEcCC----CcEEEEeCCCC
Q psy10953        134 VCVAPDGDKFVSVGED----KAVHMYSYKPE  160 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d----~~v~i~~~~~~  160 (181)
                      . ++|+|+.|+..+.+    ..|.+|++..+
T Consensus       322 ~-~~~dg~~l~~~s~~~~~~~~l~~~d~~~~  351 (741)
T 1yr2_A          322 F-VDGVGDQLWFVSGDGAPLKKIVRVDLSGS  351 (741)
T ss_dssp             E-EEEETTEEEEEECTTCTTCEEEEEECSSS
T ss_pred             E-EeccCCEEEEEECCCCCCCEEEEEeCCCC
Confidence            4 35899988877753    45999998764

>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A

Probab=99.38  E-value=6.7e-11  Score=86.34  Aligned_cols=150  Identities=8%  Similarity=0.063  Sum_probs=110.0

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-----   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-----   86 (181)
                      ..+.+++++++|+++++.. ++.|..||..+................++++++|+.+++...++.+.+|+..+..     
T Consensus        67 ~~p~~i~~~~~g~l~v~~~-~~~i~~~d~~~~~~~~~~~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~  145 (270)
T 1rwi_B           67 YQPQGLAVDGAGTVYVTDF-NNRVVTLAAGSNNQTVLPFDGLNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLP  145 (270)
T ss_dssp             CSCCCEEECTTCCEEEEET-TTEEEEECTTCSCCEECCCCSCSSEEEEEECTTCCEEEEEGGGTEEEEECTTCCSCEECC
T ss_pred             CCcceeEECCCCCEEEEcC-CCEEEEEeCCCceEeeeecCCcCCCcceEECCCCCEEEEECCCCEEEEEECCCceeEeec
Confidence            3467899999999666655 8899999987665433221222345689999999977777778899999764321     


Q ss_pred             ---cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         87 ---SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        87 ---~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                         ...+..++++|+|+++++...++.|.+||........... ....+.+++++++|+.+++...++.|.+|+......
T Consensus       146 ~~~~~~p~~i~~~~~g~l~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~~~~~  225 (270)
T 1rwi_B          146 FTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTS  225 (270)
T ss_dssp             CCSCCSCCCEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTSCEEEECTTCSCC
T ss_pred             cccCCCceeEEEeCCCCEEEEECCCCEEEEEecCCCceEeecccCCCCceEEEECCCCCEEEEECCCCcEEEEcCCCCcc
Confidence               1246788999999988877778899999987765433222 225688999999998888777788999999865543

>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*

Probab=99.37  E-value=8.3e-11  Score=97.58  Aligned_cols=150  Identities=11%  Similarity=0.063  Sum_probs=103.5

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCc----------------EEEEeCCCCcEE--EEEec--CCceEEEEEECCCCCEEEEee
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGK----------------INLYGVETGKLE--QIFDT--RGKFTLSIAYSTDGHWIASGA   72 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~----------------i~~~d~~~~~~~--~~~~~--~~~~~~~~~~s~d~~~l~~~~   72 (181)
                      .+..++|+|||+.|+.++.++.                |++|++.+++..  .++..  +......+.|||||++|+..+
T Consensus       172 ~~~~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~~~~~~~~~~~~~~~SpDg~~l~~~~  251 (710)
T 2xdw_A          172 KFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLSI  251 (710)
T ss_dssp             CSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEEE
T ss_pred             ccceEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEeccCCCCeEEEEEEEcCCCCEEEEEE
Confidence            3567999999999999888766                999999887632  22232  233456899999999998765


Q ss_pred             C-----CCcEEEEeCCC------CC---------cccEEEEEEcCCCCEEEEEeCC----CcEEEEecCCCce---eeee
Q psy10953         73 L-----DGIINIFDANT------GH---------SSWVLSTAFTRDGKFFISASAD----HTVRVWNFARREN---MHTF  125 (181)
Q Consensus        73 ~-----d~~v~i~d~~~------~~---------~~~v~~~~~s~~~~~l~~~~~d----~~i~v~d~~~~~~---~~~~  125 (181)
                      .     +..+++||+.+      +.         ...+.. .|+|+|+.|+..+..    ..|.+||+.++..   ...+
T Consensus       252 ~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~l~~~~~~~~~-~~s~dg~~l~~~s~~~~~~~~l~~~d~~~~~~~~~~~l~  330 (710)
T 2xdw_A          252 REGCDPVNRLWYCDLQQESNGITGILKWVKLIDNFEGEYD-YVTNEGTVFTFKTNRHSPNYRLINIDFTDPEESKWKVLV  330 (710)
T ss_dssp             ECSSSSCCEEEEEEGGGSSSSSCSSCCCEEEECSSSSCEE-EEEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEE
T ss_pred             EccCCCccEEEEEECcccccccCCccceEEeeCCCCcEEE-EEeccCCEEEEEECCCCCCCEEEEEeCCCCCcccceecc
Confidence            4     67899999865      31         112222 488999877665543    3699999987631   2223


Q ss_pred             ecCC--cEEEEEEccCCCEEEEEcCCCc--EEEEeCCCCeeE
Q psy10953        126 KHAD--QVWCVCVAPDGDKFVSVGEDKA--VHMYSYKPEEEV  163 (181)
Q Consensus       126 ~~~~--~v~~~~~sp~g~~l~~~~~d~~--v~i~~~~~~~~~  163 (181)
                      .+..  .+..+++++++.++++...++.  |.+|++.++..+
T Consensus       331 ~~~~~~~~~~~~~~~~~~lv~~~~~~g~~~l~~~~~~~g~~~  372 (710)
T 2xdw_A          331 PEHEKDVLEWVACVRSNFLVLCYLHDVKNTLQLHDLATGALL  372 (710)
T ss_dssp             CCCSSCEEEEEEEETTTEEEEEEEETTEEEEEEEETTTCCEE
T ss_pred             CCCCCCeEEEEEEEcCCEEEEEEEECCEEEEEEEECCCCCEE
Confidence            3433  5778899888778888887874  566676555543

>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}

Probab=99.36  E-value=3.7e-11  Score=99.49  Aligned_cols=146  Identities=15%  Similarity=0.079  Sum_probs=100.7

Q ss_pred             cCCCCEEEEEeCCC---c--EEEEeCCCCcEEEEEec------CCceEEEEEECCCCCEEEE-----eeCCCcEEEEeCC
Q psy10953         20 SPDDKYVLSGSQSG---K--INLYGVETGKLEQIFDT------RGKFTLSIAYSTDGHWIAS-----GALDGIINIFDAN   83 (181)
Q Consensus        20 s~~g~~l~~~~~d~---~--i~~~d~~~~~~~~~~~~------~~~~~~~~~~s~d~~~l~~-----~~~d~~v~i~d~~   83 (181)
                      +|+|++++....++   .  +...+...++...++..      +...+..++|||||++|+.     |+.+..|++||+.
T Consensus        76 ~~dG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~d~~~~a~~~~~~~~~~~~SPDG~~la~~~~~~G~~~~~i~v~dl~  155 (695)
T 2bkl_A           76 SRRNGRFFYVRTHKDKEKAILYWRQGESGQEKVLLDPNGWSKDGTVSLGTWAVSWDGKKVAFAQKPNAADEAVLHVIDVD  155 (695)
T ss_dssp             EEETTEEEEEEECTTCSSCEEEEEESTTSCCEEEECGGGSSSSSCEEEEEEEECTTSSEEEEEEEETTCSCCEEEEEETT
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCCCCcEEEEchHHhccCCCEEEEEEEECCCCCEEEEEECCCCCceEEEEEEECC
Confidence            48999988766544   2  44445555655455432      1224668999999999984     3345689999997


Q ss_pred             CCCcc------cE--EEEEEcCCCCEEEEEeCCCc-------------EEEEecCCCce--eeeee---cCCcEEEEEEc
Q psy10953         84 TGHSS------WV--LSTAFTRDGKFFISASADHT-------------VRVWNFARREN--MHTFK---HADQVWCVCVA  137 (181)
Q Consensus        84 ~~~~~------~v--~~~~~s~~~~~l~~~~~d~~-------------i~v~d~~~~~~--~~~~~---~~~~v~~~~~s  137 (181)
                      ++...      .+  ..++|+|||+.|+.++.+..             |++|++.++..  ...+.   +...+.++++|
T Consensus       156 tg~~~~~~~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~~~~~~~~~~~~~S  235 (695)
T 2bkl_A          156 SGEWSKVDVIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHERTGDPTTFLQSDLS  235 (695)
T ss_dssp             TCCBCSSCCBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECCCCCTTCEEEEEEC
T ss_pred             CCCCcCCcccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEecCCCCEEEEEEEEC
Confidence            65422      12  57899999999999988766             99999987652  22222   33568899999


Q ss_pred             cCCCEEEEEcCCC----cEEEEeCCCCeeEEE
Q psy10953        138 PDGDKFVSVGEDK----AVHMYSYKPEEEVEV  165 (181)
Q Consensus       138 p~g~~l~~~~~d~----~v~i~~~~~~~~~~~  165 (181)
                      |||++|+..+.++    .|++++...++...+
T Consensus       236 pDG~~l~~~~~~~~~~~~l~~~~~~~~~~~~l  267 (695)
T 2bkl_A          236 RDGKYLFVYILRGWSENDVYWKRPGEKDFRLL  267 (695)
T ss_dssp             TTSCCEEEEEEETTTEEEEEEECTTCSSCEEE
T ss_pred             CCCCEEEEEEeCCCCceEEEEEcCCCCceEEe
Confidence            9999998877655    677776655444333

>1xip_A Nucleoporin NUP159; beta-propeller, transport protein; 2.50A {Saccharomyces cerevisiae} SCOP: b.69.14.1 PDB: 3pez_C* 3rrm_C*

Probab=99.36  E-value=1e-10  Score=90.58  Aligned_cols=127  Identities=13%  Similarity=0.086  Sum_probs=98.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC----ccc
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH----SSW   89 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~----~~~   89 (181)
                      +..++|  |+++|+++ .++.|++||+++-........+...+.++.+.+.  .++++..||.+.+||+..+.    ...
T Consensus        90 V~~l~f--d~~~L~v~-~~~~l~v~dv~sl~~~~~~~~~~~~v~~i~~~~p--~~av~~~dG~L~v~dl~~~~~~~~~~~  164 (388)
T 1xip_A           90 VIFVCF--HGDQVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQN  164 (388)
T ss_dssp             EEEEEE--ETTEEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEES
T ss_pred             eeEEEE--CCCEEEEE-cCCcEEEEEchhhhccCccceeecceeeEEecCC--CEEEEECCCCEEEEEccCCccccccCC
Confidence            899999  99999998 8899999999766544444344444556666543  38889999999999998654    346


Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--eeee------e----cCCcEEEEEEccCCCEEEEEc
Q psy10953         90 VLSTAFTRDGKFFISASADHTVRVWNFARREN--MHTF------K----HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~~~------~----~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      |.+++|||+|  ++.+..||++++|+......  ..++      .    +...|.+++|.++++++++-.
T Consensus       165 Vs~v~WSpkG--~~vg~~dg~i~~~~~~~~~~~~k~~I~~Pp~~~~~~~~~~~V~sI~wl~~~~flv~y~  232 (388)
T 1xip_A          165 VTSFDVTNSQ--LAVLLKDRSFQSFAWRNGEMEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  232 (388)
T ss_dssp             EEEEEECSSE--EEEEETTSCEEEEEEETTEEEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             ceEEEEcCCc--eEEEEcCCcEEEEcCCCccccccceecCCcccccccCCCeeEEEEEEecCCeEEEEEc
Confidence            8999999999  57788999999998877653  3344      1    456799999999999988755

>2oiz_A Aromatic amine dehydrogenase, large subunit; oxidoreductase, tryptophan tryptophyl quinone, H-tunneling; HET: TRQ TSR PG4; 1.05A {Alcaligenes faecalis} PDB: 2agw_A* 2agx_A* 2agl_A* 2agz_A* 2ah0_A* 2ah1_A* 2hj4_A* 2hjb_A* 2i0t_A* 2iup_A* 2iuq_A* 2iur_A* 2iuv_A* 2agy_A* 2ok4_A* 2ok6_A* 2iaa_A* 2h47_A* 2h3x_A* 2hkr_A* ...

Probab=99.35  E-value=1.1e-10  Score=89.65  Aligned_cols=136  Identities=18%  Similarity=0.305  Sum_probs=102.5

Q ss_pred             CCCCEEEEEe------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeCCC
Q psy10953         21 PDDKYVLSGS------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDANT   84 (181)
Q Consensus        21 ~~g~~l~~~~------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~~~   84 (181)
                      ++++++++..      .|++|.+||..+++.+..+..... . .+.++|||+++++++          .++.|.+||+.+
T Consensus        13 ~~~~~~yv~~~~~~~~~d~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spdg~~lyv~~~~~~~~~~g~~~~~v~v~d~~t   90 (361)
T 2oiz_A           13 PQENRIYVMDSVFMHLTESRVHVYDYTNGKFLGMVPTAFN-G-HVQVSNDGKKIYTMTTYHERITRGKRSDVVEVWDADK   90 (361)
T ss_dssp             CGGGEEEEEECCGGGGGGCEEEEEETTTCCEEEEEECCEE-E-EEEECTTSSEEEEEEEEETTSSSSCEEEEEEEEETTT
T ss_pred             CCCCEEEEECCCCCccccCeEEEEECCCCeEEEEecCCCC-C-ceEECCCCCEEEEEEecccccccCCCCCEEEEEECcC
Confidence            4777776654      367999999999998877665433 3 799999999998876          367899999875


Q ss_pred             CCc--------------ccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCceeee-eecCCcEEEEEEccCC-CEEEEE
Q psy10953         85 GHS--------------SWVLSTAFTRDGKFFISASA--DHTVRVWNFARRENMHT-FKHADQVWCVCVAPDG-DKFVSV  146 (181)
Q Consensus        85 ~~~--------------~~v~~~~~s~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~v~~~~~sp~g-~~l~~~  146 (181)
                      ...              .....++++|+|++|+++..  ++.|.+||+.+++.+.. +..... +.+.+.|++ ..+++.
T Consensus        91 ~~~~~~i~~~~~~~~~g~~p~~i~~spdg~~l~v~n~~~~~~v~v~d~~~~~~~~~~i~~~~~-~~v~~~p~~~~~~~~~  169 (361)
T 2oiz_A           91 LTFEKEISLPPKRVQGLNYDGLFRQTTDGKFIVLQNASPATSIGIVDVAKGDYVEDVTAAAGC-WSVIPQPNRPRSFMTI  169 (361)
T ss_dssp             CCEEEEEEECTTBCCBCCCGGGEEECTTSSEEEEEEESSSEEEEEEETTTTEEEEEEGGGTTE-EEEEECTTSSSEEEEE
T ss_pred             CcEEEEEEcCccccccCCCcceEEECCCCCEEEEECCCCCCeEEEEECCCCcEEEEEecCCCc-ceeEEcCCCCeeEEEE
Confidence            432              12345799999999888764  57899999999988777 665443 445677876 567778


Q ss_pred             cCCCcEEEEeCCC
Q psy10953        147 GEDKAVHMYSYKP  159 (181)
Q Consensus       147 ~~d~~v~i~~~~~  159 (181)
                      +.|+.+.+|++..
T Consensus       170 ~~dg~~~~v~~~~  182 (361)
T 2oiz_A          170 CGDGGLLTINLGE  182 (361)
T ss_dssp             ETTSSEEEEEECT
T ss_pred             CCCCcEEEEEECC
Confidence            8888888888765

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=99.33  E-value=4.2e-11  Score=92.30  Aligned_cols=164  Identities=7%  Similarity=-0.014  Sum_probs=117.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEEecC-------CceEEEEEECCCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGS----------QSGKINLYGVETGKLEQIFDTR-------GKFTLSIAYSTDGH   66 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~s~d~~   66 (181)
                      +..+..+...  .+.++|||+++++++          .+++|.+||..+++....+...       +.....+.++|||+
T Consensus        59 ~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~vv~~I~v~~~~~~~~g~~P~~ia~SpDGk  136 (368)
T 1mda_H           59 LGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSA  136 (368)
T ss_dssp             EEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSS
T ss_pred             EEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCCEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444444443  799999999998886          3688999999999998887643       12234688999999


Q ss_pred             EEEEeeC--CCcEEE--EeCCC------C---------------------------Cc----------------------
Q psy10953         67 WIASGAL--DGIINI--FDANT------G---------------------------HS----------------------   87 (181)
Q Consensus        67 ~l~~~~~--d~~v~i--~d~~~------~---------------------------~~----------------------   87 (181)
                      +++.+..  .+.+.+  +|+.+      +                           ..                      
T Consensus       137 ~lyVan~~~~~~v~V~~iD~~tv~~i~v~~~~~~~p~g~~~~~~~~~dg~~~~vd~~~~~~~~~~v~~~~t~~i~vg~~P  216 (368)
T 1mda_H          137 CLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQA  216 (368)
T ss_dssp             CEEEEECSSSCEEEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCC
T ss_pred             EEEEEccCCCCeEEEEEEchhhceEEECCCceEEccCCCeEEEEEcCCCCEEEEECccccccCCeEEEEeeeeeeCCCCc
Confidence            9888764  356777  66521      0                           00                      


Q ss_pred             --------------c------------cE------------------E---EEEEcCCCCEEEEEeC---------CCcE
Q psy10953         88 --------------S------------WV------------------L---STAFTRDGKFFISASA---------DHTV  111 (181)
Q Consensus        88 --------------~------------~v------------------~---~~~~s~~~~~l~~~~~---------d~~i  111 (181)
                                    +            .+                  .   .++++|+++.+..+..         +..+
T Consensus       217 ~~~~~~~~~~~vs~~~V~viD~~~~~~~v~~~~~~~~~~~~~~~~~p~g~~~v~~s~dg~~lyV~~~~~~~~~~~~~~~~  296 (368)
T 1mda_H          217 AQANYPGMLVWAVASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENT  296 (368)
T ss_dssp             EEETTTTEEEECBSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEE
T ss_pred             cccccCCEEEEEcCCEEEEEECCCCcceEEEEEEeccccccccccccCcceeeEEcCCCCEEEEEeccccCcccccCCCE
Confidence                          0            00                  0   0568888876665432         2356


Q ss_pred             EEEecCCCceeeeeecCCcEEEEEEccCCCE-EEEEc-CCCcEEEEeCCCCeeEEEcCCC
Q psy10953        112 RVWNFARRENMHTFKHADQVWCVCVAPDGDK-FVSVG-EDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       112 ~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~-l~~~~-~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      .++|+.+.+.+..+.-....++++|+|||++ +++.. .++.|.++|..+++.+....-|
T Consensus       297 ~ViD~~t~~vv~~i~vg~~p~gi~~s~Dg~~l~va~~~~~~~VsVID~~t~kvv~~I~vg  356 (368)
T 1mda_H          297 SSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELD  356 (368)
T ss_dssp             EEEESSSCCEEECCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCC
T ss_pred             EEEECCCCeEEEEEECCCCcceEEECCCCCEEEEEccCCCCeEEEEECCCCcEEEEEECC
Confidence            6999999998888876667999999999984 56666 5899999999999888765544

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=99.33  E-value=5.4e-11  Score=93.26  Aligned_cols=161  Identities=14%  Similarity=0.165  Sum_probs=111.7

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEEecC-------CceEEEEEECCCCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGS----------QSGKINLYGVETGKLEQIFDTR-------GKFTLSIAYSTDGH   66 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~s~d~~   66 (181)
                      +..+..+...  .+++||||+++++++          .++.|.++|..+++....+...       +.....+.++|||+
T Consensus       112 v~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~~vv~~I~v~g~~r~~~g~~P~~~~~spDGk  189 (426)
T 3c75_H          112 LGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTFLPIADIELPDAPRFLVGTYQWMNALTPDNK  189 (426)
T ss_dssp             EEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTCCEEEEEEETTCCCCCBSCCGGGSEECTTSS
T ss_pred             EEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCCcEEEEEECCCccccccCCCcceEEEcCCCC
Confidence            3444445443  899999999998776          3678999999999988776542       11223678999999


Q ss_pred             EEEEeeC--CCcEEEEeCCCCCcc------------------------------------cEE-----------------
Q psy10953         67 WIASGAL--DGIINIFDANTGHSS------------------------------------WVL-----------------   91 (181)
Q Consensus        67 ~l~~~~~--d~~v~i~d~~~~~~~------------------------------------~v~-----------------   91 (181)
                      +++.+..  ++.|.+.|+.+....                                    .+.                 
T Consensus       190 ~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g~~~~~p~g~~~~v~~~~dG~~~~V~~~~~~v~~~~~~~~~v~~~p~~~~  269 (426)
T 3c75_H          190 NLLFYQFSPAPAVGVVDLEGKTFDRMLDVPDCYHIFPASPTVFYMNCRDGSLARVDFADGETKVTNTEVFHTEDELLINH  269 (426)
T ss_dssp             EEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSSEEEEECCTTCCEEEECCCCSCTTSCBCSC
T ss_pred             EEEEEecCCCCeEEEEECCCCeEEEEEEcCCceeeccCCCcEEEEEcCCCCEEEEECCCCcEEEEeeeeeccCCCceeeE
Confidence            9988764  578888887532100                                    000                 


Q ss_pred             -----------------------------------------------------EEEEcCCCCEEEEEeC----------C
Q psy10953         92 -----------------------------------------------------STAFTRDGKFFISASA----------D  108 (181)
Q Consensus        92 -----------------------------------------------------~~~~s~~~~~l~~~~~----------d  108 (181)
                                                                           .++++|+++.+.....          .
T Consensus       270 ~~~~~dg~~~~~~s~~g~V~ViD~~~~~~~v~~~~~~~~~~~i~~g~~p~g~~~va~s~dg~rlyVa~~~~~~gthk~~s  349 (426)
T 3c75_H          270 PAFSLRSGRLVWPTYTGKIFQADLTAEGATFRAPIEALTEAERADDWRPGGWQQTAYHRQSDRIYLLVDQRDEWKHKAAS  349 (426)
T ss_dssp             CEECTTTCEEEEEBTTSEEEEEEECSSCEEECCCEESSCTTTGGGTEEECSSSCEEEEGGGTEEEEEEEECCTTCTTSCE
T ss_pred             eeecCCCCEEEEEeCCCcEEEEeccCCceEEeeeeeeccccccccccccCCceeeEEcCCCCEEEEEecccccccccCCC
Confidence                                                                 0344455443333221          2


Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEEc-CCCcEEEEeCCCCeeEEEc
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSVG-EDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~~-~d~~v~i~~~~~~~~~~~~  166 (181)
                      +.|.++|+.+.+.+..+.-....++++|+|||+ ++++.. .++.|.++|..+++.+...
T Consensus       350 ~~VsVID~~T~kvv~~I~vg~~P~gia~spDg~~~lyv~n~~s~~VsVID~~t~kvv~tI  409 (426)
T 3c75_H          350 RFVVVLNAETGERINKIELGHEIDSINVSQDAEPLLYALSAGTQTLHIYDAATGEELRSV  409 (426)
T ss_dssp             EEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEE
T ss_pred             CEEEEEECCCCeEEEEEECCCCcCeEEEccCCCEEEEEEcCCCCeEEEEECCCCCEEEEe
Confidence            357777777777777776555688999999999 887777 5899999999999888653

>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}

Probab=99.30  E-value=1.8e-10  Score=87.17  Aligned_cols=147  Identities=9%  Similarity=-0.069  Sum_probs=107.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS------   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~------   87 (181)
                      ...+++. +++..++...+++|.+||..+++.+..+.. ......++++++++.+++...++.|.+||+.++..      
T Consensus        46 ~~~i~~~-~~~lyv~~~~~~~v~viD~~t~~~~~~i~~-~~~p~~i~~~~~g~lyv~~~~~~~v~~iD~~t~~~~~~i~~  123 (328)
T 3dsm_A           46 AQSMVIR-DGIGWIVVNNSHVIFAIDINTFKEVGRITG-FTSPRYIHFLSDEKAYVTQIWDYRIFIINPKTYEITGYIEC  123 (328)
T ss_dssp             EEEEEEE-TTEEEEEEGGGTEEEEEETTTCCEEEEEEC-CSSEEEEEEEETTEEEEEEBSCSEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEEE-CCEEEEEEcCCCEEEEEECcccEEEEEcCC-CCCCcEEEEeCCCeEEEEECCCCeEEEEECCCCeEEEEEEc
Confidence            3566664 455556666789999999999999877753 33456889989985444444789999999875421      


Q ss_pred             -c------cEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC----------
Q psy10953         88 -S------WVLSTAFTRDGKFFISAS-ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED----------  149 (181)
Q Consensus        88 -~------~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d----------  149 (181)
                       .      .+..+++ .+++.+++.. .++.|.++|+.+++....+........++++|+|++++++..+          
T Consensus       124 g~~~~~~~~p~~i~~-~~~~lyv~~~~~~~~v~viD~~t~~~~~~i~~g~~p~~i~~~~dG~l~v~~~~~~~~~~~~~~~  202 (328)
T 3dsm_A          124 PDMDMESGSTEQMVQ-YGKYVYVNCWSYQNRILKIDTETDKVVDELTIGIQPTSLVMDKYNKMWTITDGGYEGSPYGYEA  202 (328)
T ss_dssp             TTCCTTTCBCCCEEE-ETTEEEEEECTTCCEEEEEETTTTEEEEEEECSSCBCCCEECTTSEEEEEBCCBCTTCSSCBCC
T ss_pred             CCccccCCCcceEEE-ECCEEEEEcCCCCCEEEEEECCCCeEEEEEEcCCCccceEEcCCCCEEEEECCCccCCccccCC
Confidence             1      3445666 4455555554 4889999999998877777655567789999999877766654          


Q ss_pred             CcEEEEeCCCCeeE
Q psy10953        150 KAVHMYSYKPEEEV  163 (181)
Q Consensus       150 ~~v~i~~~~~~~~~  163 (181)
                      +.|.++|..+++..
T Consensus       203 ~~v~~id~~t~~v~  216 (328)
T 3dsm_A          203 PSLYRIDAETFTVE  216 (328)
T ss_dssp             CEEEEEETTTTEEE
T ss_pred             ceEEEEECCCCeEE
Confidence            78999999887654

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=99.30  E-value=4.5e-10  Score=83.99  Aligned_cols=154  Identities=11%  Similarity=0.074  Sum_probs=107.8

Q ss_pred             eeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +..+...........|+|+|+ ++++...++.|..|+. +++.. .+......+..+.++++|+++++...++.|..|+.
T Consensus        37 ~~~l~~~~~~~egp~~~~~g~~l~~~d~~~~~i~~~~~-~g~~~-~~~~~~~~~~gl~~d~dG~l~v~~~~~~~v~~~~~  114 (305)
T 3dr2_A           37 LLTLYDQATWSEGPAWWEAQRTLVWSDLVGRRVLGWRE-DGTVD-VLLDATAFTNGNAVDAQQRLVHCEHGRRAITRSDA  114 (305)
T ss_dssp             CEEEECCCSSEEEEEEEGGGTEEEEEETTTTEEEEEET-TSCEE-EEEESCSCEEEEEECTTSCEEEEETTTTEEEEECT
T ss_pred             eEEEecCCcCccCCeEeCCCCEEEEEECCCCEEEEEeC-CCCEE-EEeCCCCccceeeECCCCCEEEEECCCCEEEEECC
Confidence            445555555567889999999 5677777899999987 45543 33344455678999999997776666678999987


Q ss_pred             CCCC-----------cccEEEEEEcCCCCEEEE----EeC-------------CCcEEEEecCCCceeeeeecCCcEEEE
Q psy10953         83 NTGH-----------SSWVLSTAFTRDGKFFIS----ASA-------------DHTVRVWNFARRENMHTFKHADQVWCV  134 (181)
Q Consensus        83 ~~~~-----------~~~v~~~~~s~~~~~l~~----~~~-------------d~~i~v~d~~~~~~~~~~~~~~~v~~~  134 (181)
                      ....           ...+..++++|+|+++++    +..             .+.|+.||..+++..... .....+.+
T Consensus       115 ~g~~~~~~~~~~~~~~~~~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~~~~p~gl  193 (305)
T 3dr2_A          115 DGQAHLLVGRYAGKRLNSPNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-DLDHPNGL  193 (305)
T ss_dssp             TSCEEEEECEETTEECSCCCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-EESSEEEE
T ss_pred             CCCEEEEEeccCCCccCCCCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-cCCCCcce
Confidence            5210           123456899999998886    332             246788887665533322 33457889


Q ss_pred             EEccCCCEEEEEcCC------CcEEEEeCCCC
Q psy10953        135 CVAPDGDKFVSVGED------KAVHMYSYKPE  160 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d------~~v~i~~~~~~  160 (181)
                      +|+||++.++.+...      +.|.+|++..+
T Consensus       194 ~~spdg~~lyv~~~~~~~~~~~~i~~~~~~~~  225 (305)
T 3dr2_A          194 AFSPDEQTLYVSQTPEQGHGSVEITAFAWRDG  225 (305)
T ss_dssp             EECTTSSEEEEEECCC---CCCEEEEEEEETT
T ss_pred             EEcCCCCEEEEEecCCcCCCCCEEEEEEecCC
Confidence            999999987776654      68999988654

>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}

Probab=99.28  E-value=5e-10  Score=84.58  Aligned_cols=144  Identities=14%  Similarity=0.128  Sum_probs=95.9

Q ss_pred             eEEEEEEcCCCCEEEEEeCCC-------cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--------CcE
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSG-------KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--------GII   77 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~-------~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--------~~v   77 (181)
                      .+..++|+||| +++++..+.       ...+|.+.+++...+...  .....  ++|||++|+.++.+        ..+
T Consensus       172 ~~~~~~~spdg-~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~l~~~--~~~~~--~spdg~~l~~~~~~~~~~~~~~~~l  246 (347)
T 2gop_A          172 RFSSGIWHRDK-IVVNVPHREIIPQYFKFWDIYIWEDGKEEKMFEK--VSFYA--VDSDGERILLYGKPEKKYMSEHNKL  246 (347)
T ss_dssp             TTCEEEEETTE-EEEEEECCCSSCCSSCCEEEEEEETTEEEEEEEE--ESEEE--EEECSSCEEEEECCSSSCCCSSCEE
T ss_pred             CcccccCCCCe-EEEEEecccccccccccccEEEeCCCceEEeccC--cceee--ECCCCCEEEEEEccccCCccccceE
Confidence            56788999999 777776542       344554445655444433  33333  39999988877643        468


Q ss_pred             EEEeCCC-------CCcccEEE-EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC
Q psy10953         78 NIFDANT-------GHSSWVLS-TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED  149 (181)
Q Consensus        78 ~i~d~~~-------~~~~~v~~-~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d  149 (181)
                      .+|| ..       .+...+.. +.|+ ++ ++++++.++.+++| +.+++......+...+.+++++|  +.+++++.+
T Consensus       247 ~~~d-~~~~~~l~~~~~~~~~~~~~~s-dg-~~~~~~~~~~~~l~-~~~g~~~~~~~~~~~v~~~~~s~--~~~~~~~~~  320 (347)
T 2gop_A          247 YIYD-GKEVMGILDEVDRGVGQAKIKD-GK-VYFTLFEEGSVNLY-IWDGEIKPIAKGRHWIMGFDVDE--IVVYLKETA  320 (347)
T ss_dssp             EEEC-SSCEEESSTTCCSEEEEEEEET-TE-EEEEEEETTEEEEE-EESSSEEEEECSSSEEEEEEESS--SEEEEEECS
T ss_pred             EEEC-CCceEeccccCCcccCCccEEc-Cc-EEEEEecCCcEEEE-EcCCceEEEecCCCeEEeeeeeC--cEEEEEcCC
Confidence            8887 21       23345665 8999 88 88899999999999 87555444444566789999999  677777766


Q ss_pred             CcE-EEEeCCCCeeEEEcCC
Q psy10953        150 KAV-HMYSYKPEEEVEVNGG  168 (181)
Q Consensus       150 ~~v-~i~~~~~~~~~~~~~~  168 (181)
                      +.. .+|.+. ++...+...
T Consensus       321 ~~~~~l~~~~-g~~~~lt~~  339 (347)
T 2gop_A          321 TRLRELFTWD-GEEKQLTDY  339 (347)
T ss_dssp             SSCCEEEEES-SSEEECCCT
T ss_pred             CChHHheEeC-CcEEEeccc
Confidence            544 777776 554444433

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.27  E-value=6.6e-09  Score=76.43  Aligned_cols=151  Identities=10%  Similarity=0.102  Sum_probs=111.8

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      ...+++++++++|++.++...++.|..||.. ++..... ......+..++++++|..+++...++.+..||....    
T Consensus        14 ~~~~~~i~~d~~g~l~v~~~~~~~v~~~d~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~g~~~~~   92 (299)
T 2z2n_A           14 DTGPYGITVSDKGKVWITQHKANMISCINLD-GKITEYPLPTPDAKVMCLTISSDGEVWFTENAANKIGRITKKGIIKEY   92 (299)
T ss_dssp             SCCEEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEE
T ss_pred             CCCccceEECCCCCEEEEecCCCcEEEEcCC-CCeEEecCCcccCceeeEEECCCCCEEEeCCCCCeEEEECCCCcEEEE
Confidence            3467999999999987777668899999988 6654432 123345678999999998877776888999987521    


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-ee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                          ....+..++++|+|+++++...++.|..||. +++.... .. ....+.+++++++|+.+++...++.|..|+. +
T Consensus        93 ~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~  170 (299)
T 2z2n_A           93 TLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITD-DGKIREYELPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-S  170 (299)
T ss_dssp             ECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-T
T ss_pred             eCCCcCCCceeeEECCCCCEEEEecCCceEEEECC-CCCEEEecCCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-C
Confidence                2235788999999998888777889999998 4433221 12 2346889999999988887777789999998 5


Q ss_pred             CeeEE
Q psy10953        160 EEEVE  164 (181)
Q Consensus       160 ~~~~~  164 (181)
                      +....
T Consensus       171 g~~~~  175 (299)
T 2z2n_A          171 GDITE  175 (299)
T ss_dssp             CCEEE
T ss_pred             CcEEE
Confidence            54433

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.25  E-value=9.9e-10  Score=81.72  Aligned_cols=145  Identities=11%  Similarity=0.170  Sum_probs=104.7

Q ss_pred             eEEEEEEcCCCCEEEEEeCC---------------CcEEEEeCCCCcEEEEEecCCceEEEEEEC----CCCCEEEEe-e
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS---------------GKINLYGVETGKLEQIFDTRGKFTLSIAYS----TDGHWIASG-A   72 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d---------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s----~d~~~l~~~-~   72 (181)
                      .+.+++++|+|++.++...+               +.|..++.. ++......... ....++++    ++++.++.+ .
T Consensus       118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~~~-~~~~i~~~~~~d~dg~~l~v~~~  195 (314)
T 1pjx_A          118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ-FPNGIAVRHMNDGRPYQLIVAET  195 (314)
T ss_dssp             CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES-SEEEEEEEECTTSCEEEEEEEET
T ss_pred             CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccCCC-CcceEEEecccCCCCCEEEEEEC
Confidence            36789999999987776655               567777765 66544433222 23578899    999766554 5


Q ss_pred             CCCcEEEEeCC-CC-------------Cc-ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEE
Q psy10953         73 LDGIINIFDAN-TG-------------HS-SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCV  136 (181)
Q Consensus        73 ~d~~v~i~d~~-~~-------------~~-~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~  136 (181)
                      .++.+.+||.. .+             +. ..+..++++++|+++++...++.|.+||..+++.+..+. +...+.++++
T Consensus       196 ~~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d~~G~l~v~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~i~~  275 (314)
T 1pjx_A          196 PTKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHF  275 (314)
T ss_dssp             TTTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEE
T ss_pred             CCCeEEEEECCCCCccccceEEEECCCCCCCCCCceEECCCCCEEEEEcCCCEEEEEcCCCCcEeEEEeCCCCCceeEEE
Confidence            67889999864 21             11 456788999999998888788899999998666555554 3367899999


Q ss_pred             ccCCCEEE-EEcCCCcEEEEeCCC
Q psy10953        137 APDGDKFV-SVGEDKAVHMYSYKP  159 (181)
Q Consensus       137 sp~g~~l~-~~~~d~~v~i~~~~~  159 (181)
                      +|+|+.|+ +...++.|..|+...
T Consensus       276 ~~dg~~l~v~~~~~~~l~~~~~~~  299 (314)
T 1pjx_A          276 KPQTKTIFVTEHENNAVWKFEWQR  299 (314)
T ss_dssp             CTTSSEEEEEETTTTEEEEEECSS
T ss_pred             CCCCCEEEEEeCCCCeEEEEeCCC
Confidence            99999555 445568899998764

>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*

Probab=99.23  E-value=3.2e-09  Score=86.21  Aligned_cols=139  Identities=17%  Similarity=0.164  Sum_probs=106.4

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--CCC-------cccEE
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--TGH-------SSWVL   91 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--~~~-------~~~v~   91 (181)
                      |++..+++...+++|.++|..+++.+..+.... ....+.++|||+++++++.|+.|.+||+.  +..       .....
T Consensus       165 ~~~~~~V~~~~~~~V~viD~~t~~v~~~i~~g~-~p~~v~~SpDGr~lyv~~~dg~V~viD~~~~t~~~v~~i~~G~~P~  243 (567)
T 1qks_A          165 LENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEAR  243 (567)
T ss_dssp             GGGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEE
T ss_pred             CCceEEEEeCCCCeEEEEECCCCeEEEEEeCCC-CccceEECCCCCEEEEEcCCCeEEEEECCCCCCcEeEEEecCCCCc
Confidence            455566778889999999999999988776533 34589999999999999999999999995  332       12356


Q ss_pred             EEEEc----CCCCEEEEEeC-CCcEEEEecCCCceeeeeec------------CCcEEEEEEccCCCEE-EEEcCCCcEE
Q psy10953         92 STAFT----RDGKFFISASA-DHTVRVWNFARRENMHTFKH------------ADQVWCVCVAPDGDKF-VSVGEDKAVH  153 (181)
Q Consensus        92 ~~~~s----~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~------------~~~v~~~~~sp~g~~l-~~~~~d~~v~  153 (181)
                      .++|+    |+|+++++++. ++.+.++|..+.+.+..+.-            ...+..+..++++..+ +.....+.|.
T Consensus       244 ~ia~s~~~~pDGk~l~v~n~~~~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~~~~g~v~  323 (567)
T 1qks_A          244 SIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKIL  323 (567)
T ss_dssp             EEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEE
T ss_pred             eeEEccccCCCCCEEEEEEccCCeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEecCCCeEE
Confidence            88999    69997776664 68999999998887766541            1257788889886654 4455678999


Q ss_pred             EEeCCCC
Q psy10953        154 MYSYKPE  160 (181)
Q Consensus       154 i~~~~~~  160 (181)
                      ++++...
T Consensus       324 ~vd~~~~  330 (567)
T 1qks_A          324 LVDYTDL  330 (567)
T ss_dssp             EEETTCS
T ss_pred             EEecCCC
Confidence            9998654

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.21  E-value=2.2e-09  Score=83.06  Aligned_cols=139  Identities=17%  Similarity=0.189  Sum_probs=100.9

Q ss_pred             EEEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEe
Q psy10953         17 VVFSPDDKYVLSGSQ-----SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFD   81 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d   81 (181)
                      ....|+++++++...     ++.|.++|..+++.+..+......  .+.++|||++++.++          .++.|.+||
T Consensus        38 ~~~~pd~~~vyV~~~~~~~~~~~V~ViD~~t~~v~~~I~vG~~P--~va~spDG~~lyVan~~~~r~~~G~~~~~VsviD  115 (386)
T 3sjl_D           38 EAPAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFD  115 (386)
T ss_dssp             CCCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             eccCCCCCEEEEEcCcccCCCCEEEEEECCCCeEEEEEECCCCC--cEEECCCCCEEEEEcccccccccCCCCCEEEEEE
Confidence            345799999987765     679999999999998887754443  389999999887765          367899999


Q ss_pred             CCCCCcc---------------cEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE
Q psy10953         82 ANTGHSS---------------WVLSTAFTRDGKFFISASA--DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        82 ~~~~~~~---------------~v~~~~~s~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                      ..+....               ....++|+|||+++..+..  ++.|.++|+.+++.+.++..++.  ...+....+.++
T Consensus       116 ~~t~~v~~~I~v~~g~r~~~g~~P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~--~~~~P~g~~~~~  193 (386)
T 3sjl_D          116 PVTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDC--YHIFPTAPDTFF  193 (386)
T ss_dssp             TTTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSE--EEEEEEETTEEE
T ss_pred             CCCCeEEEEEECCCccccccCCCCceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCc--ceeecCCCceeE
Confidence            9765421               2234799999998777764  68899999999998888865443  122222344555


Q ss_pred             EEcCCCcEEEEeCCC
Q psy10953        145 SVGEDKAVHMYSYKP  159 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~  159 (181)
                      +.+.||.+.+.++.+
T Consensus       194 ~~~~DG~~~~v~~~~  208 (386)
T 3sjl_D          194 MHCRDGSLAKVAFGT  208 (386)
T ss_dssp             EEETTSCEEEEECCS
T ss_pred             EECCCCCEEEEECCC
Confidence            666666666666654

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.21  E-value=6.5e-09  Score=77.40  Aligned_cols=151  Identities=11%  Similarity=0.111  Sum_probs=102.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC----CceEEEEEECCCCCEEEEeeC-----------CCc
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR----GKFTLSIAYSTDGHWIASGAL-----------DGI   76 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~d~~~l~~~~~-----------d~~   76 (181)
                      ..+.+++++|+|+++++.  +..|.+||.++++........    ......+.++|+|+.+++...           .+.
T Consensus        54 ~~~~~i~~~~dG~l~v~~--~~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~  131 (297)
T 3g4e_A           54 APVSSVALRQSGGYVATI--GTKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGA  131 (297)
T ss_dssp             SCEEEEEEBTTSSEEEEE--TTEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEE
T ss_pred             CceEEEEECCCCCEEEEE--CCeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEecCCcccccccccCCCcE
Confidence            457889999999955543  568999999888776544332    223567899999997665432           234


Q ss_pred             EEEEeCCCC------CcccEEEEEEcCCCCEE-EEEeCCCcEEEEec--CCCce-----eeeee-cCCcEEEEEEccCCC
Q psy10953         77 INIFDANTG------HSSWVLSTAFTRDGKFF-ISASADHTVRVWNF--ARREN-----MHTFK-HADQVWCVCVAPDGD  141 (181)
Q Consensus        77 v~i~d~~~~------~~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~--~~~~~-----~~~~~-~~~~v~~~~~sp~g~  141 (181)
                      ++.++....      .....+.++|+|+++.+ ++.+.++.|..||+  .++..     +..+. ....+.+++++++|+
T Consensus       132 l~~~d~~g~~~~~~~~~~~pngi~~spdg~~lyv~~~~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~  211 (297)
T 3g4e_A          132 LYSLFPDHHVKKYFDQVDISNGLDWSLDHKIFYYIDSLSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGK  211 (297)
T ss_dssp             EEEECTTSCEEEEEEEESBEEEEEECTTSCEEEEEEGGGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSC
T ss_pred             EEEEECCCCEEEEeeccccccceEEcCCCCEEEEecCCCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCC
Confidence            455554321      11235778999999855 55566788999987  34432     11222 235678999999998


Q ss_pred             EEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        142 KFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       142 ~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ..++...++.|.+|+..+++.+.
T Consensus       212 lwva~~~~~~v~~~d~~tG~~~~  234 (297)
T 3g4e_A          212 LWVACYNGGRVIRLDPVTGKRLQ  234 (297)
T ss_dssp             EEEEEETTTEEEEECTTTCCEEE
T ss_pred             EEEEEcCCCEEEEEcCCCceEEE
Confidence            88877777889999988665543

>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*

Probab=99.21  E-value=1.6e-08  Score=74.36  Aligned_cols=149  Identities=9%  Similarity=0.057  Sum_probs=109.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE-ecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~-~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ..+..++++++|++.++...++.|..||.. ++..... ......+..+.++++|+.+++...++.+..||....     
T Consensus        57 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~d~~g~~~~~~  135 (299)
T 2z2n_A           57 AKVMCLTISSDGEVWFTENAANKIGRITKK-GIIKEYTLPNPDSAPYGITEGPNGDIWFTEMNGNRIGRITDDGKIREYE  135 (299)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTCCEEEEE
T ss_pred             CceeeEEECCCCCEEEeCCCCCeEEEECCC-CcEEEEeCCCcCCCceeeEECCCCCEEEEecCCceEEEECCCCCEEEec
Confidence            457889999999988877778899999976 4443222 113345668999999998887777888999987321     


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-ee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                         ....+..++++++|+++++...++.|..||. +++.... .. ....+.+++++++|+.+++...++.|.+|+. ++
T Consensus       136 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~-~g  213 (299)
T 2z2n_A          136 LPNKGSYPSFITLGSDNALWFTENQNNAIGRITE-SGDITEFKIPTPASGPVGITKGNDDALWFVEIIGNKIGRITT-SG  213 (299)
T ss_dssp             CSSTTCCEEEEEECTTSCEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCCceEEEcCCCCEEEEeCCCCEEEEEcC-CCcEEEeeCCCCCCcceeEEECCCCCEEEEccCCceEEEECC-CC
Confidence               2245788999999998887777789999998 5543322 12 2345889999999998777777889999998 55


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      ...
T Consensus       214 ~~~  216 (299)
T 2z2n_A          214 EIT  216 (299)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            433

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=3.3e-09  Score=82.82  Aligned_cols=145  Identities=12%  Similarity=0.142  Sum_probs=103.7

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC--cEEEEeCCCC-----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG--IINIFDANTG-----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~--~v~i~d~~~~-----   85 (181)
                      ..+.++|+|+|+++++...++.|+.||..++++......... .. ++|+++++.|+.+..++  .+.+++...+     
T Consensus       132 ~P~~la~d~~g~lyv~d~~~~~I~~id~~~g~~~~~~~~~~~-~~-ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~  209 (409)
T 3hrp_A          132 YMWGIAAVGNNTVLAYQRDDPRVRLISVDDNKVTTVHPGFKG-GK-PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTR  209 (409)
T ss_dssp             CEEEEEECSTTEEEEEETTTTEEEEEETTTTEEEEEEETCCB-CB-CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEE
T ss_pred             CceEEEEeCCCCEEEEecCCCcEEEEECCCCEEEEeeccCCC-Cc-eeEecCCCcEEEEecCCCceEEEEEcCCCceeEE
Confidence            468999999999888877789999999998887766554333 33 89999999888887765  7888886532     


Q ss_pred             -------CcccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeee----ee-cCC-cEE-EEEEccC-CCEEEEEcCC
Q psy10953         86 -------HSSWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHT----FK-HAD-QVW-CVCVAPD-GDKFVSVGED  149 (181)
Q Consensus        86 -------~~~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~----~~-~~~-~v~-~~~~sp~-g~~l~~~~~d  149 (181)
                             ....+.+++++| +|.+++ +..++.|+.||..++.....    .. ... ... .++|+|+ ++.+++-..+
T Consensus       210 ~g~~~~~~~~~p~~iav~p~~g~lyv-~d~~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~  288 (409)
T 3hrp_A          210 IGQLGSTFSGKIGAVALDETEEWLYF-VDSNKNFGRFNVKTQEVTLIKQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNL  288 (409)
T ss_dssp             EEECCTTSCSCCCBCEECTTSSEEEE-ECTTCEEEEEETTTCCEEEEEECCCCSCCCCSSCCEEEEETTTTEEEEEETTT
T ss_pred             eeeccchhcCCcEEEEEeCCCCeEEE-EECCCcEEEEECCCCCEEEEecccccCCCCCCccccEEEeCCCCEEEEEeCCC
Confidence                   223456789999 555555 66688999999987653221    11 111 123 8999995 5555666667


Q ss_pred             CcEEEEeCCCC
Q psy10953        150 KAVHMYSYKPE  160 (181)
Q Consensus       150 ~~v~i~~~~~~  160 (181)
                      +.|+.|+....
T Consensus       289 ~~I~~~~~~g~  299 (409)
T 3hrp_A          289 SSVYKITPDGE  299 (409)
T ss_dssp             TEEEEECTTCC
T ss_pred             CEEEEEecCCC
Confidence            89999987654

>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}

Probab=99.19  E-value=3.7e-09  Score=82.54  Aligned_cols=149  Identities=13%  Similarity=0.057  Sum_probs=104.4

Q ss_pred             EEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEE----ecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcc--
Q psy10953         17 VVFSPDDKYVLSGSQSG--KINLYGVETGKLEQIF----DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSS--   88 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~--~i~~~d~~~~~~~~~~----~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~--   88 (181)
                      ++|+|+++.|+++..++  .|..++..++.....+    ........+++++|++..|+....++.|+.||...+...  
T Consensus       176 ia~~~~g~~l~~~d~~~~~~I~~~d~~~~~~~~~~g~~~~~~~~~p~~iav~p~~g~lyv~d~~~~I~~~d~~~~~~~~~  255 (409)
T 3hrp_A          176 PAVTKDKQRVYSIGWEGTHTVYVYMKASGWAPTRIGQLGSTFSGKIGAVALDETEEWLYFVDSNKNFGRFNVKTQEVTLI  255 (409)
T ss_dssp             CEECTTSSEEEEEBSSTTCEEEEEEGGGTTCEEEEEECCTTSCSCCCBCEECTTSSEEEEECTTCEEEEEETTTCCEEEE
T ss_pred             eeEecCCCcEEEEecCCCceEEEEEcCCCceeEEeeeccchhcCCcEEEEEeCCCCeEEEEECCCcEEEEECCCCCEEEE
Confidence            89999999998888766  7888888766543333    112233457899995555555777889999998644211  


Q ss_pred             ----------cE-E-EEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeeec---------------CCcEEEEEEccCC
Q psy10953         89 ----------WV-L-STAFTRD-GKFFISASADHTVRVWNFARRENMHTFKH---------------ADQVWCVCVAPDG  140 (181)
Q Consensus        89 ----------~v-~-~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---------------~~~v~~~~~sp~g  140 (181)
                                .. . .++|+|+ +.++++-..++.|+.|+..... ......               -.....++++|+|
T Consensus       256 ~~~~~~g~~~~~P~~~ia~~p~~g~lyv~d~~~~~I~~~~~~g~~-~~~~g~~~~~g~~dg~~~~~~~~~P~gia~d~dG  334 (409)
T 3hrp_A          256 KQLELSGSLGTNPGPYLIYYFVDSNFYMSDQNLSSVYKITPDGEC-EWFCGSATQKTVQDGLREEALFAQPNGMTVDEDG  334 (409)
T ss_dssp             EECCCCSCCCCSSCCEEEEETTTTEEEEEETTTTEEEEECTTCCE-EEEEECTTCCSCBCEEGGGCBCSSEEEEEECTTC
T ss_pred             ecccccCCCCCCccccEEEeCCCCEEEEEeCCCCEEEEEecCCCE-EEEEeCCCCCCcCCCcccccEeCCCeEEEEeCCC
Confidence                      11 3 8999995 6777777778899999876431 111111               1347899999999


Q ss_pred             CEEEEEc-CCCcEEEEeCCCCeeEEEc
Q psy10953        141 DKFVSVG-EDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus       141 ~~l~~~~-~d~~v~i~~~~~~~~~~~~  166 (181)
                      +++++-. .++.|+.|+...+....+.
T Consensus       335 ~lyvad~~~~~~I~~~~~~~G~v~~~~  361 (409)
T 3hrp_A          335 NFYIVDGFKGYCLRKLDILDGYVSTVA  361 (409)
T ss_dssp             CEEEEETTTTCEEEEEETTTTEEEEEE
T ss_pred             CEEEEeCCCCCEEEEEECCCCEEEEEe
Confidence            9888887 8899999998777644443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=99.18  E-value=1.8e-09  Score=89.56  Aligned_cols=146  Identities=14%  Similarity=0.150  Sum_probs=97.5

Q ss_pred             eEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC------------
Q psy10953         13 DMWNVVFSPDDKYVLSGS-----QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG------------   75 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~------------   75 (181)
                      .+..++|||||++||.+.     ...+|+++|+.+++.+.... .......++|+ ||+.|+.+..+.            
T Consensus       130 ~l~~~~~SpDg~~lAy~~~~~G~~~~~i~v~dl~tg~~~~~~~-~~~k~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~  207 (693)
T 3iuj_A          130 ALDQLSFSRDGRILAYSLSLAGSDWREIHLMDVESKQPLETPL-KDVKFSGISWL-GNEGFFYSSYDKPDGSELSARTDQ  207 (693)
T ss_dssp             EEEEEEECTTSSEEEEEEECSSCCEEEEEEEETTTCSEEEEEE-EEEESCCCEEE-TTTEEEEEESSCCC-------CCC
T ss_pred             EEEEEEECCCCCEEEEEEecCCCceEEEEEEECCCCCCCcccc-CCceeccEEEe-CCCEEEEEEecCcccccccccCCC
Confidence            467889999999998533     23579999999999765421 11101357899 999999887774            


Q ss_pred             -cEEEEeCCCC-------------CcccEEEEEEcCCCCEEEEEeC----CCcEEEEecCCCc-eeeee-ecCCcEEEEE
Q psy10953         76 -IINIFDANTG-------------HSSWVLSTAFTRDGKFFISASA----DHTVRVWNFARRE-NMHTF-KHADQVWCVC  135 (181)
Q Consensus        76 -~v~i~d~~~~-------------~~~~v~~~~~s~~~~~l~~~~~----d~~i~v~d~~~~~-~~~~~-~~~~~v~~~~  135 (181)
                       .|++|++.++             +......+.|+|+|++|+....    ...++++|+.++. ....+ .+....... 
T Consensus       208 ~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-  286 (693)
T 3iuj_A          208 HKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANSTSGNRLYVKDLSQENAPLLTVQGDLDADVSL-  286 (693)
T ss_dssp             CEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESSSSCCEEEEEETTSTTCCCEEEECSSSSCEEE-
T ss_pred             cEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccCCCCcEEEEEECCCCCCceEEEeCCCCceEEE-
Confidence             4999988542             1224678899999997754332    2479999987653 23333 344444443 


Q ss_pred             EccCCCEEEEEc-CC---CcEEEEeCCCCe
Q psy10953        136 VAPDGDKFVSVG-ED---KAVHMYSYKPEE  161 (181)
Q Consensus       136 ~sp~g~~l~~~~-~d---~~v~i~~~~~~~  161 (181)
                      ++++|+.|+..+ .+   ..|..+++..+.
T Consensus       287 ~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~  316 (693)
T 3iuj_A          287 VDNKGSTLYLLTNRDAPNRRLVTVDAANPG  316 (693)
T ss_dssp             EEEETTEEEEEECTTCTTCEEEEEETTSCC
T ss_pred             EeccCCEEEEEECCCCCCCEEEEEeCCCCC
Confidence            667777665544 33   578888887654

>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...

Probab=99.15  E-value=4.8e-09  Score=77.96  Aligned_cols=149  Identities=15%  Similarity=0.188  Sum_probs=102.6

Q ss_pred             eccCeeeEEEEEEcCCCCEEEE-------EeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEECCC-CCEEEEeeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLS-------GSQSGKINLYGVETGKLEQIFD----TRGKFTLSIAYSTD-GHWIASGALD   74 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~-------~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~s~d-~~~l~~~~~d   74 (181)
                      +........+++|+++|+++++       +..++.|..||..+++......    .....+.++.++++ |+++++.. .
T Consensus        13 ~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~-~   91 (314)
T 1pjx_A           13 VTEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADM-R   91 (314)
T ss_dssp             EECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEET-T
T ss_pred             hhccCCCccCceECCCCCEEEEEeccccCCCCCCEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEEC-C
Confidence            3334444578999999988877       5778999999988888754332    02234568999999 76555443 4


Q ss_pred             CcEEEEeCCCCC-------------cccEEEEEEcCCCCEEEEEeCC---------------CcEEEEecCCCceeeeee
Q psy10953         75 GIINIFDANTGH-------------SSWVLSTAFTRDGKFFISASAD---------------HTVRVWNFARRENMHTFK  126 (181)
Q Consensus        75 ~~v~i~d~~~~~-------------~~~v~~~~~s~~~~~l~~~~~d---------------~~i~v~d~~~~~~~~~~~  126 (181)
                      +.+.+||.. +.             ...+..++++|+|+++++...+               +.|..||.. ++......
T Consensus        92 ~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~  169 (314)
T 1pjx_A           92 LGLLVVQTD-GTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDT  169 (314)
T ss_dssp             TEEEEEETT-SCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEE
T ss_pred             CCEEEEeCC-CCEEEEEeccCCCccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEecc
Confidence            478888865 21             1236789999999988776654               467777765 44333333


Q ss_pred             cCCcEEEEEEc----cCCCEEEEE-cCCCcEEEEeCC
Q psy10953        127 HADQVWCVCVA----PDGDKFVSV-GEDKAVHMYSYK  158 (181)
Q Consensus       127 ~~~~v~~~~~s----p~g~~l~~~-~~d~~v~i~~~~  158 (181)
                      .......++++    |+|+.++.+ ..++.|.+|+..
T Consensus       170 ~~~~~~~i~~~~~~d~dg~~l~v~~~~~~~i~~~~~~  206 (314)
T 1pjx_A          170 AFQFPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIK  206 (314)
T ss_dssp             EESSEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEE
T ss_pred             CCCCcceEEEecccCCCCCEEEEEECCCCeEEEEECC
Confidence            33457889999    999766554 567899999975

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.15  E-value=7.5e-08  Score=70.76  Aligned_cols=149  Identities=9%  Similarity=0.089  Sum_probs=109.8

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ..+.+++++++|++.++...++.|..||.. ++...... .....+..++++++|+..++...++.+..+|....     
T Consensus        20 ~~p~~i~~d~~g~l~v~~~~~~~v~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~g~l~v~~~~~~~v~~~d~~g~~~~~~   98 (300)
T 2qc5_A           20 SGPYGITSSEDGKVWFTQHKANKISSLDQS-GRIKEFEVPTPDAKVMCLIVSSLGDIWFTENGANKIGKLSKKGGFTEYP   98 (300)
T ss_dssp             CCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSCEEEEETTTTEEEEECTTSCEEEEE
T ss_pred             CCcceeeECCCCCEEEEcCCCCeEEEECCC-CceEEEECCCCCCcceeEEECCCCCEEEEecCCCeEEEECCCCCeEEec
Confidence            457899999999988777778999999988 66654221 12244668999999997777666788999987621     


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee-eee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH-TFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~-~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                         ....+..++++++|+++++...++.|..||.. ++... ... ....+.+++++++|+.+++...++.|..++. .+
T Consensus        99 ~~~~~~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  176 (300)
T 2qc5_A           99 LPQPDSGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITN-TG  176 (300)
T ss_dssp             CSSTTCCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TC
T ss_pred             CCCCCCCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECC-CC
Confidence               12457889999999988887778899999987 44332 122 2356889999999997777766788999988 44


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      ...
T Consensus       177 ~~~  179 (300)
T 2qc5_A          177 KLE  179 (300)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            433

>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B

Probab=99.14  E-value=8e-09  Score=76.92  Aligned_cols=135  Identities=15%  Similarity=0.224  Sum_probs=94.9

Q ss_pred             eEEEEEEcCCCCEEEEEeCC---------CcEEEEeCC-CCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS---------GKINLYGVE-TGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFD   81 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d---------~~i~~~d~~-~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d   81 (181)
                      .+.+++++|+|++.++....         ..-.+|.+. .++....... ......++|+||++.|+. ...++.|..||
T Consensus        99 ~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g~~~~~~~~-~~~pngi~~spdg~~lyv~~~~~~~i~~~~  177 (297)
T 3g4e_A           99 RFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDHHVKKYFDQ-VDISNGLDWSLDHKIFYYIDSLSYSVDAFD  177 (297)
T ss_dssp             EEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTSCEEEEEEE-ESBEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred             CCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCCCEEEEeec-cccccceEEcCCCCEEEEecCCCCcEEEEe
Confidence            46789999999976654322         234555554 3444333322 223458999999987755 45578899998


Q ss_pred             CC--CCC-------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-CcEEEEEEc-cCCCEEE
Q psy10953         82 AN--TGH-------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA-DQVWCVCVA-PDGDKFV  144 (181)
Q Consensus        82 ~~--~~~-------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~s-p~g~~l~  144 (181)
                      +.  ++.             ...+..++++++|++.++...++.|..||..+++.+..+..+ ..+++++|. |+++.|+
T Consensus       178 ~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~~~~v~~~d~~tG~~~~~i~~p~~~~t~~~f~g~d~~~L~  257 (297)
T 3g4e_A          178 YDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYNGGRVIRLDPVTGKRLQTVKLPVDKTTSCCFGGKNYSEMY  257 (297)
T ss_dssp             ECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEETTTEEEEECTTTCCEEEEEECSSSBEEEEEEESGGGCEEE
T ss_pred             ccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcCCCEEEEEcCCCceEEEEEECCCCCceEEEEeCCCCCEEE
Confidence            63  321             134677899999998888888889999999888877777644 579999998 8988776


Q ss_pred             EEcC
Q psy10953        145 SVGE  148 (181)
Q Consensus       145 ~~~~  148 (181)
                      .++.
T Consensus       258 vt~~  261 (297)
T 3g4e_A          258 VTCA  261 (297)
T ss_dssp             EEEB
T ss_pred             EEcC
Confidence            5553

>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*

Probab=99.13  E-value=1e-08  Score=79.08  Aligned_cols=139  Identities=9%  Similarity=0.018  Sum_probs=100.4

Q ss_pred             EEcCCCCEEEEEeC--CC---cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeC
Q psy10953         18 VFSPDDKYVLSGSQ--SG---KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDA   82 (181)
Q Consensus        18 ~~s~~g~~l~~~~~--d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~   82 (181)
                      ...|+++++++...  ..   +|.++|..+++.+..+..... . .+.++|||++++.+.          .++.|.+||.
T Consensus        27 ~~~~~~~~~yv~~~~~~~~~~~v~v~D~~t~~~~~~i~~g~~-p-~i~~spDg~~lyv~n~~~~~~~rg~~~~~v~viD~  104 (373)
T 2mad_H           27 APGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL-P-NPVAAHSGSEFALASTSFSRIAKGKRTDYVEVFDP  104 (373)
T ss_pred             cCCCCCCEEEEeCCcccCCccEEEEEECCCCeEEEEecCCCC-C-CeEECCCCCEEEEEeccccccccCCCCCeEEEEEC
Confidence            34588888877653  22   889999999998876654322 3 789999999998875          3678999998


Q ss_pred             CCCCc---------------ccEEEEEEcCCCCEEEEEeC--CCcEEEEecCCCceeee-eecCCcEEEEEEccCC-CEE
Q psy10953         83 NTGHS---------------SWVLSTAFTRDGKFFISASA--DHTVRVWNFARRENMHT-FKHADQVWCVCVAPDG-DKF  143 (181)
Q Consensus        83 ~~~~~---------------~~v~~~~~s~~~~~l~~~~~--d~~i~v~d~~~~~~~~~-~~~~~~v~~~~~sp~g-~~l  143 (181)
                      .+...               .....++|+|+|++|+.++.  +..|.++| .+++.+.. +.....   +.+.|++ +.+
T Consensus       105 ~t~~~~~~i~~~~~~~~~~g~~p~~~~~spDG~~l~v~n~~~~~~v~viD-~t~~~~~~~i~~~~~---~~~~~~~~~~~  180 (373)
T 2mad_H          105 VTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVV-QGGSSDDQLLSSPTC---YHIHPGAPSTF  180 (373)
T ss_pred             CCCcEEEEEECCCccccccCCCccceEECCCCCEEEEEecCCCCeEEEEE-CCCCEEeEEcCCCce---EEEEeCCCceE
Confidence            65321               12346899999998888774  47899999 99888777 665443   3445555 445


Q ss_pred             EEEcCCCcEEEEeCCCCeeE
Q psy10953        144 VSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ++.+.|+.+.+++. ++..+
T Consensus       181 ~~~~~dg~~~~vd~-~g~~~  199 (373)
T 2mad_H          181 YLLCAQGGLAKTDH-AGGAA  199 (373)
T ss_pred             EEEcCCCCEEEEEC-CCcEE
Confidence            66677888888888 65444

>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}

Probab=99.13  E-value=3.9e-09  Score=88.05  Aligned_cols=140  Identities=16%  Similarity=0.166  Sum_probs=94.5

Q ss_pred             cCCCCEEEEEeCCCc---EEEE--eCC---CCcEEEEEecC----C--ceEEEEEECCCCCEEEEeeCC-----CcEEEE
Q psy10953         20 SPDDKYVLSGSQSGK---INLY--GVE---TGKLEQIFDTR----G--KFTLSIAYSTDGHWIASGALD-----GIINIF   80 (181)
Q Consensus        20 s~~g~~l~~~~~d~~---i~~~--d~~---~~~~~~~~~~~----~--~~~~~~~~s~d~~~l~~~~~d-----~~v~i~   80 (181)
                      +|+|++++....++.   -.+|  +..   .++...++...    +  ..+..++|||||++|+.+..+     ..+++|
T Consensus       115 ~pdG~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~lld~~~l~~~~~~~~~~~~~SPDG~~la~~~~~~G~e~~~i~v~  194 (741)
T 1yr2_A          115 QRRGASVFYSWNSGLMNQSQLLVRPADAPVGTKGRVLLDPNTWAKDGATALDAWAASDDGRLLAYSVQDGGSDWRTVKFV  194 (741)
T ss_dssp             EEETTEEEEEEECSSCSSCEEEEEETTSCTTCCCEEEECGGGCC----EEEEEEEECTTSSEEEEEEEETTCSEEEEEEE
T ss_pred             EEECCEEEEEEEcCCCeEEEEEEEcCCccCCCCCEEEECHHHhccCCCEEEEeEEECCCCCEEEEEEcCCCCceEEEEEE
Confidence            489999886665432   4445  443   44444443221    1  245678999999999876543     369999


Q ss_pred             eCCCCCccc-----E--EEEEEcCCCCEEEEEeCCCc--------------EEEEecCCCce--eeeee---cCCcEEEE
Q psy10953         81 DANTGHSSW-----V--LSTAFTRDGKFFISASADHT--------------VRVWNFARREN--MHTFK---HADQVWCV  134 (181)
Q Consensus        81 d~~~~~~~~-----v--~~~~~s~~~~~l~~~~~d~~--------------i~v~d~~~~~~--~~~~~---~~~~v~~~  134 (181)
                      |+.++....     +  ..++|+|| +.|+.++.++.              |++|++.++..  ...+.   +...+.++
T Consensus       195 dl~tg~~~~~~~~~~~~~~~~wspD-~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~  273 (741)
T 1yr2_A          195 GVADGKPLADELKWVKFSGLAWLGN-DALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFATPELPKRGHGA  273 (741)
T ss_dssp             ETTTCCEEEEEEEEEESCCCEESTT-SEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECCTTCTTCEEEE
T ss_pred             ECCCCCCCCccCCCceeccEEEECC-CEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEeccCCCCeEEEEE
Confidence            998775321     1  35789999 98888776554              88999876642  22222   22347899


Q ss_pred             EEccCCCEEEEEcCC-----CcEEEEeCCCC
Q psy10953        135 CVAPDGDKFVSVGED-----KAVHMYSYKPE  160 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d-----~~v~i~~~~~~  160 (181)
                      .+||||++|+..+.+     ..|++|++.++
T Consensus       274 ~~SpDG~~l~~~~~~~~~~~~~l~~~d~~~~  304 (741)
T 1yr2_A          274 SVSSDGRWVVITSSEGTDPVNTVHVARVTNG  304 (741)
T ss_dssp             EECTTSCEEEEEEECTTCSCCEEEEEEEETT
T ss_pred             EECCCCCEEEEEEEccCCCcceEEEEECCCC
Confidence            999999998877744     38999998765

>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...

Probab=99.13  E-value=7.3e-09  Score=80.08  Aligned_cols=154  Identities=16%  Similarity=0.221  Sum_probs=101.6

Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEEecCCce---E----EEEEECCCCCEEEEe-------------
Q psy10953         14 MWNVVFSPDDKYVLSGSQ--SGKINLYGVETGKLEQIFDTRGKF---T----LSIAYSTDGHWIASG-------------   71 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~---~----~~~~~s~d~~~l~~~-------------   71 (181)
                      .+.++|+|||+++++++.  ++.|.++|+.+++.+..+...+..   .    .-+..++||++++..             
T Consensus       139 P~~~a~spDGk~lyVan~~~~~~VsVID~~t~~vv~tI~v~g~~~~~P~g~~~~~~~~~DG~~~~v~~~~~g~v~~~~~~  218 (386)
T 3sjl_D          139 PWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTE  218 (386)
T ss_dssp             GGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECC
T ss_pred             CceEEEcCCCCEEEEEEcCCCCeEEEEECCCCcEEEEEECCCcceeecCCCceeEEECCCCCEEEEECCCCCeEEEeecc
Confidence            457899999999988864  689999999999887766532210   0    012334444443332             


Q ss_pred             -------------------------eCCCcEEEEeCCCCCc---c-----------------cEEEEEEcCCCCEEEEEe
Q psy10953         72 -------------------------ALDGIINIFDANTGHS---S-----------------WVLSTAFTRDGKFFISAS  106 (181)
Q Consensus        72 -------------------------~~d~~v~i~d~~~~~~---~-----------------~v~~~~~s~~~~~l~~~~  106 (181)
                                               +.++.|++.|......   .                 ....++++|+++.+....
T Consensus       219 ~~~~~~~~~~~~~~~~~~dG~~~~vs~~g~V~v~d~~~~~~~v~~~~~~~~~~~~~~g~~p~g~q~~a~~~~~~~lyV~~  298 (386)
T 3sjl_D          219 VFHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLV  298 (386)
T ss_dssp             CCSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEE
T ss_pred             eeccccccccccceeEcCCCcEEEEeCCCEEEEEECCCCcceeecceeccccccccccccCCCcceeeECCCCCeEEEEe
Confidence                                     2234444444432110   0                 012256677777555543


Q ss_pred             C----------CCcEEEEecCCCceeeeeecCCcEEEEEEccCCC-EEEEE-cCCCcEEEEeCCCCeeEEEcC
Q psy10953        107 A----------DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGD-KFVSV-GEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       107 ~----------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~-~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      .          ...|.++|+++++.+..+.....+++++++||++ +|++. ..++.|.++|..+++.+....
T Consensus       299 ~~~~~~~hk~~~~~V~viD~~t~kv~~~i~vg~~~~~lavs~D~~~~ly~tn~~~~~VsViD~~t~k~~~~i~  371 (386)
T 3sjl_D          299 DQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  371 (386)
T ss_dssp             EECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECSSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             ccccccccCCCCCEEEEEECCCCeEEEEEECCCCcceEEECCCCCeEEEEEcCCCCeEEEEECCCCcEEEEec
Confidence            2          2468899999998888887767899999999997 66664 458999999999998876443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.10  E-value=2.8e-08  Score=75.05  Aligned_cols=138  Identities=12%  Similarity=0.117  Sum_probs=94.9

Q ss_pred             EEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------
Q psy10953         15 WNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        15 ~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      -..+|+|+++ ++++...++.|..||..+++... +.. ...+.++.++++|+++++. .+ .+.+||..++.       
T Consensus        52 egp~~~~~~~~l~~~d~~~~~i~~~d~~~~~~~~-~~~-~~~v~~i~~~~dg~l~v~~-~~-gl~~~d~~~g~~~~~~~~  127 (326)
T 2ghs_A           52 EGPTFDPASGTAWWFNILERELHELHLASGRKTV-HAL-PFMGSALAKISDSKQLIAS-DD-GLFLRDTATGVLTLHAEL  127 (326)
T ss_dssp             EEEEEETTTTEEEEEEGGGTEEEEEETTTTEEEE-EEC-SSCEEEEEEEETTEEEEEE-TT-EEEEEETTTCCEEEEECS
T ss_pred             cCCeEeCCCCEEEEEECCCCEEEEEECCCCcEEE-EEC-CCcceEEEEeCCCeEEEEE-CC-CEEEEECCCCcEEEEeeC
Confidence            5688999755 55666678899999998876543 332 3346688999999877654 33 48889876432       


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEE-cCCCcEEE
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASA------DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSV-GEDKAVHM  154 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~i  154 (181)
                           ...+..+.++|+|+++++...      .+.|+.++  +++.............++|+|+|+.++.+ +.++.|.+
T Consensus       128 ~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~~~~~i~~s~dg~~lyv~~~~~~~I~~  205 (326)
T 2ghs_A          128 ESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMR  205 (326)
T ss_dssp             STTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEE
T ss_pred             CCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCcccCCeEEcCCCCEEEEEECCCCEEEE
Confidence                 135788999999997776542      24566666  44332222233457789999999876554 45789999


Q ss_pred             EeCC
Q psy10953        155 YSYK  158 (181)
Q Consensus       155 ~~~~  158 (181)
                      |++.
T Consensus       206 ~d~~  209 (326)
T 2ghs_A          206 VPLD  209 (326)
T ss_dssp             EEBC
T ss_pred             EEcc
Confidence            9985

>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}

Probab=99.10  E-value=1.2e-07  Score=69.61  Aligned_cols=148  Identities=6%  Similarity=0.088  Sum_probs=107.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-EecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-----
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQI-FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-----   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-----   85 (181)
                      ..+..++++++|++.++...++.|..+|.. ++.... +.........+.++++|+..++...++.+..+|....     
T Consensus       104 ~~~~~i~~~~~g~l~v~~~~~~~i~~~~~~-g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~~g~~~~~~  182 (300)
T 2qc5_A          104 SGPYGITEGLNGDIWFTQLNGDRIGKLTAD-GTIYEYDLPNKGSYPAFITLGSDNALWFTENQNNSIGRITNTGKLEEYP  182 (300)
T ss_dssp             CCEEEEEECSTTCEEEEETTTTEEEEECTT-SCEEEEECSSTTCCEEEEEECTTSSEEEEETTTTEEEEECTTCCEEEEE
T ss_pred             CCCccceECCCCCEEEEccCCCeEEEECCC-CCEEEccCCCCCCCceeEEECCCCCEEEEecCCCeEEEECCCCcEEEee
Confidence            457889999999988777778899999987 665533 2222344668999999996666666788999987321     


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-ee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                         ....+..++++++|+++++....+.|.+||. ++..... .. ....+.+++++++|+.+++...++.|..|+. .+
T Consensus       183 ~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g~~~~~~~~~~~~~~~~i~~d~~g~l~v~~~~~~~i~~~~~-~g  260 (300)
T 2qc5_A          183 LPTNAAAPVGITSGNDGALWFVEIMGNKIGRITT-TGEISEYDIPTPNARPHAITAGKNSEIWFTEWGANQIGRITN-DN  260 (300)
T ss_dssp             CSSTTCCEEEEEECTTSSEEEEETTTTEEEEECT-TCCEEEEECSSTTCCEEEEEECSTTCEEEEETTTTEEEEECT-TS
T ss_pred             CCCCCCCcceEEECCCCCEEEEccCCCEEEEEcC-CCcEEEEECCCCCCCceEEEECCCCCEEEeccCCCeEEEECC-CC
Confidence               2235788999999998887777778999998 4332221 22 3356889999999997777766789999998 34


Q ss_pred             ee
Q psy10953        161 EE  162 (181)
Q Consensus       161 ~~  162 (181)
                      ..
T Consensus       261 ~~  262 (300)
T 2qc5_A          261 TI  262 (300)
T ss_dssp             CE
T ss_pred             cE
Confidence            43

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=99.03  E-value=3.2e-08  Score=75.18  Aligned_cols=150  Identities=9%  Similarity=0.072  Sum_probs=101.7

Q ss_pred             eeEEEEEEcCCCCEEEEEeC-----CCcEEEEeCCCCcEEEEEecC------CceEEEEEECCCCCEE-EEee---CCCc
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQ-----SGKINLYGVETGKLEQIFDTR------GKFTLSIAYSTDGHWI-ASGA---LDGI   76 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~-----d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l-~~~~---~d~~   76 (181)
                      ..+..++++++|++.++-..     ++.|.+||+.+++++..+...      ......+++++++..+ ++-.   .++.
T Consensus        67 ~~p~gv~~d~~g~L~v~D~g~~~~~~~~i~~~d~~tg~~~~~~~~~~~~~~~~~~~~~v~vd~~~g~~yvtd~~~~~~~~  146 (343)
T 2qe8_A           67 DTVLGIKSDGNGIVWMLDNGNQSKSVPKLVAWDTLNNQLSRVIYLPPPITLSNSFVNDLAVDLIHNFVYISDPAPDDKAA  146 (343)
T ss_dssp             SCEEEEEECSSSEEEEEECHHHHTSCCEEEEEETTTTEEEEEEECCTTTSCTTCCCCEEEEETTTTEEEEEECCSGGGCE
T ss_pred             eEeeEEEEcCCCcEEEEcCCCCcCCCCeEEEEECCCCeEEEEEECChhhcccccccceEEEecCCCEEEEEcCccCCCCe
Confidence            45789999999886665443     578999999999977666532      1233578899865444 4444   5788


Q ss_pred             EEEEeCCCCC--------c-----------------------------ccEEEEEEcCCCCEEEEEeCCC-cEEEEecC-
Q psy10953         77 INIFDANTGH--------S-----------------------------SWVLSTAFTRDGKFFISASADH-TVRVWNFA-  117 (181)
Q Consensus        77 v~i~d~~~~~--------~-----------------------------~~v~~~~~s~~~~~l~~~~~d~-~i~v~d~~-  117 (181)
                      +.+||+.++.        .                             ..+..++|+|+|+.|..+...+ .++.++.. 
T Consensus       147 i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia~s~dg~~ly~~~~~~~~l~~~~~~~  226 (343)
T 2qe8_A          147 LIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIVLDAENEWLYLSPMHSTSMYRIKSAD  226 (343)
T ss_dssp             EEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEEECTTSCEEEEEESSCSEEEEEEHHH
T ss_pred             EEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeEeccCCCEEEEEeCCCCeEEEEEHHH
Confidence            9999975321        0                             1257899999998777766554 56555532 


Q ss_pred             --CCc-----e---eeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953        118 --RRE-----N---MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus       118 --~~~-----~---~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                        .+.     .   +....+.....+++++++|+.+++...++.|.+|+...++
T Consensus       227 ~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~  280 (343)
T 2qe8_A          227 LSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRA  280 (343)
T ss_dssp             HTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTE
T ss_pred             hcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCC
Confidence              110     0   1111223345678999999999998889999999984454

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=99.02  E-value=6.4e-08  Score=71.21  Aligned_cols=151  Identities=13%  Similarity=0.090  Sum_probs=104.8

Q ss_pred             EEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEEecCC-ceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCccc
Q psy10953         14 MWNVVFSPDDKYVLSGSQ--SGKINLYGVETGKLEQIFDTRG-KFTLSIAYSTDGHWIAS-GALDGIINIFDANTGHSSW   89 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~~~~   89 (181)
                      ...++|+||+.+.++.+.  ++.|+++|..+++.+..+.... .+...+.++  +..|.. .-.++.+.++|..+.....
T Consensus        23 ~~Gl~~~~dg~Lyvstg~~~~s~v~~iD~~tg~v~~~i~l~~~~fgeGi~~~--g~~lyv~t~~~~~v~viD~~t~~v~~  100 (266)
T 2iwa_A           23 TQGLVYAENDTLFESTGLYGRSSVRQVALQTGKVENIHKMDDSYFGEGLTLL--NEKLYQVVWLKNIGFIYDRRTLSNIK  100 (266)
T ss_dssp             EEEEEECSTTEEEEEECSTTTCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEETTCSEEEEEETTTTEEEE
T ss_pred             cccEEEeCCCeEEEECCCCCCCEEEEEECCCCCEEEEEecCCCcceEEEEEe--CCEEEEEEecCCEEEEEECCCCcEEE
Confidence            468999998755555543  5799999999999988776432 233455554  445554 4457899999987543211


Q ss_pred             E------EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC------CcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         90 V------LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA------DQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        90 v------~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      .      ....++++|+.++.+..++.+.++|..+.+.+..+.-.      ..++.+.+. +|+.++....++.|.+.|.
T Consensus       101 ~i~~g~~~g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~  179 (266)
T 2iwa_A          101 NFTHQMKDGWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYNGHRVIRLNELEYI-NGEVWANIWQTDCIARISA  179 (266)
T ss_dssp             EEECCSSSCCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEEET
T ss_pred             EEECCCCCeEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCCCcccccceeEEEE-CCEEEEecCCCCeEEEEEC
Confidence            1      12346778876666666889999999998877776521      136788888 7766666656789999999


Q ss_pred             CCCeeEEEcC
Q psy10953        158 KPEEEVEVNG  167 (181)
Q Consensus       158 ~~~~~~~~~~  167 (181)
                      .+++.+....
T Consensus       180 ~tg~V~~~I~  189 (266)
T 2iwa_A          180 KDGTLLGWIL  189 (266)
T ss_dssp             TTCCEEEEEE
T ss_pred             CCCcEEEEEE
Confidence            9987765443

>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1

Probab=99.01  E-value=1.6e-07  Score=70.93  Aligned_cols=133  Identities=14%  Similarity=0.191  Sum_probs=91.1

Q ss_pred             eeEEEEEEcCCCCEEEEEeC------CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCC-
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQ------SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDAN-   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~-   83 (181)
                      ..+.+++++|+|++.++...      .+.|..++  +++....... ......++|+||++.++.+ ..++.|.+||+. 
T Consensus       134 ~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~-~~~~~~i~~s~dg~~lyv~~~~~~~I~~~d~~~  210 (326)
T 2ghs_A          134 NRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD-ISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDA  210 (326)
T ss_dssp             EEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE-ESSEEEEEECTTSCEEEEEETTTCEEEEEEBCT
T ss_pred             CCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC-CcccCCeEEcCCCCEEEEEECCCCEEEEEEccc
Confidence            34788999999997665432      24455555  5555443322 2234578999999877654 456889999975 


Q ss_pred             -CC-C-------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCcEEEEEEc-cCCCEEEEE
Q psy10953         84 -TG-H-------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-ADQVWCVCVA-PDGDKFVSV  146 (181)
Q Consensus        84 -~~-~-------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~s-p~g~~l~~~  146 (181)
                       ++ .             ...+..++++++|+++++...++.|..||. +++.+..+.. ...+.+++|+ |+++.|+.+
T Consensus       211 ~~Gl~~~~~~~~~~~~~~~~~p~gi~~d~~G~lwva~~~~~~v~~~d~-~g~~~~~i~~~~~~~~~~af~g~d~~~L~vt  289 (326)
T 2ghs_A          211 RTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  289 (326)
T ss_dssp             TTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ccCCcccCceEEEECCCCCCCCCeeEECCCCCEEEEEeCCCEEEEECC-CCCEEEEEECCCCCcEEEEEecCCCCEEEEE
Confidence             33 1             123567889999998887777788999998 4555555553 3469999998 898877555


Q ss_pred             cC
Q psy10953        147 GE  148 (181)
Q Consensus       147 ~~  148 (181)
                      +.
T Consensus       290 ~~  291 (326)
T 2ghs_A          290 SA  291 (326)
T ss_dssp             EB
T ss_pred             ec
Confidence            43

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.99  E-value=1e-10  Score=90.14  Aligned_cols=136  Identities=12%  Similarity=0.150  Sum_probs=76.3

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEE------EE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLST------AF   95 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~------~~   95 (181)
                      ++..+++++.|+.|+.||..+|+.+..+.. +. +.+..+..++..+++++.|+.++.||..++...+....      .-
T Consensus         8 ~~~~v~~gs~dg~v~a~d~~tG~~~W~~~~-~~-~~s~p~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~   85 (369)
T 2hz6_A            8 PETLLFVSTLDGSLHAVSKRTGSIKWTLKE-DP-VLQVPTHVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQA   85 (369)
T ss_dssp             CTTEEEEEETTSEEEEEETTTCCEEEEEEC-CC-SCCCC-----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTT
T ss_pred             eCCEEEEEcCCCEEEEEECCCCCEEEEecC-CC-ceecceEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCcccccc
Confidence            678899999999999999999998876665 33 22334456777788888999999999976643211100      01


Q ss_pred             cC---CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         96 TR---DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        96 s~---~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      +|   .+..+++++.++.++.||..+++.+..+.....   ..++|++..+++++.++.|+.||..+++.
T Consensus        86 sp~~~~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~---~~~~p~~~~v~~~~~dg~v~a~d~~tG~~  152 (369)
T 2hz6_A           86 SPCRSSDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA---DSLSPSTSLLYLGRTEYTITMYDTKTREL  152 (369)
T ss_dssp             CSCC-----CCCCEEEEEEEEECCC-------------------------EEEEEEEEEEECCCSSSSSC
T ss_pred             CceEecCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc---ccccccCCEEEEEecCCEEEEEECCCCCE
Confidence            11   345667788889999999999988776654332   34567888999999999999999987754

>3c75_H MADH, methylamine dehydrogenase heavy chain; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}

Probab=98.99  E-value=7.6e-08  Score=75.45  Aligned_cols=107  Identities=18%  Similarity=0.142  Sum_probs=82.4

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeCCCC
Q psy10953         21 PDDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDANTG   85 (181)
Q Consensus        21 ~~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~~~~   85 (181)
                      |+++++++++..     ++|.++|..+++.+..+......  .+.++|||++++.+.          .++.|.++|..+.
T Consensus        82 ~~~~~vyV~n~~~~~~~~~VsVID~~t~~vv~~I~vG~~P--gia~SpDgk~lyVan~~~~~~~~G~~~~~VsviD~~t~  159 (426)
T 3c75_H           82 PDARRVYIQDPAHFAAITQQFVIDGSTGRILGMTDGGFLP--HPVAAEDGSFFAQASTVFERIARGKRTDYVEVFDPVTF  159 (426)
T ss_dssp             CCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECTTTC
T ss_pred             CCCCEEEEECCCcCCCCCeEEEEECCCCEEEEEEECCCCC--ceEECCCCCEEEEEeccccccccCCCCCEEEEEECCCC
Confidence            577877666543     69999999999999888764443  799999999888775          4678999999765


Q ss_pred             Cccc---------------EEEEEEcCCCCEEEEEeC--CCcEEEEecCCCceeeeeecCC
Q psy10953         86 HSSW---------------VLSTAFTRDGKFFISASA--DHTVRVWNFARRENMHTFKHAD  129 (181)
Q Consensus        86 ~~~~---------------v~~~~~s~~~~~l~~~~~--d~~i~v~d~~~~~~~~~~~~~~  129 (181)
                      ....               ...++|+|||+++..+..  ++.|.++|+.+.+.+..+...+
T Consensus       160 ~vv~~I~v~g~~r~~~g~~P~~~~~spDGk~lyV~n~~~~~~VsVID~~t~kvv~~I~v~g  220 (426)
T 3c75_H          160 LPIADIELPDAPRFLVGTYQWMNALTPDNKNLLFYQFSPAPAVGVVDLEGKTFDRMLDVPD  220 (426)
T ss_dssp             CEEEEEEETTCCCCCBSCCGGGSEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCS
T ss_pred             cEEEEEECCCccccccCCCcceEEEcCCCCEEEEEecCCCCeEEEEECCCCeEEEEEEcCC
Confidence            4221               224689999998887764  5789999999998888776543

>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}

Probab=98.95  E-value=2e-08  Score=74.94  Aligned_cols=131  Identities=11%  Similarity=0.114  Sum_probs=91.6

Q ss_pred             EEEEEEcCCCCEEEE----EeC-------------CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--
Q psy10953         14 MWNVVFSPDDKYVLS----GSQ-------------SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--   74 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~----~~~-------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--   74 (181)
                      +.+++++|+|++.++    |..             .+.|..+|..+++..... . ......++|+||++.|+.+...  
T Consensus       133 ~~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~~-~-~~~p~gl~~spdg~~lyv~~~~~~  210 (305)
T 3dr2_A          133 PNDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRMA-D-LDHPNGLAFSPDEQTLYVSQTPEQ  210 (305)
T ss_dssp             CCCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEEE-E-ESSEEEEEECTTSSEEEEEECCC-
T ss_pred             CCCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEEe-c-CCCCcceEEcCCCCEEEEEecCCc
Confidence            356899999998876    332             246777777777765544 2 2234579999999988777655  


Q ss_pred             ----CcEEEEeCCCCC-----------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccC
Q psy10953         75 ----GIINIFDANTGH-----------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        75 ----~~v~i~d~~~~~-----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~  139 (181)
                          +.+..|++..+.           ...+..++++++|++.++. .+ .|.+||. .++.+..+..+..+.+++|+|+
T Consensus       211 ~~~~~~i~~~~~~~~~l~~~~~~~~~~~~~pdgi~~d~~G~lwv~~-~~-gv~~~~~-~g~~~~~~~~~~~~~~~~f~~d  287 (305)
T 3dr2_A          211 GHGSVEITAFAWRDGALHDRRHFASVPDGLPDGFCVDRGGWLWSSS-GT-GVCVFDS-DGQLLGHIPTPGTASNCTFDQA  287 (305)
T ss_dssp             --CCCEEEEEEEETTEEEEEEEEECCSSSCCCSEEECTTSCEEECC-SS-EEEEECT-TSCEEEEEECSSCCCEEEECTT
T ss_pred             CCCCCEEEEEEecCCCccCCeEEEECCCCCCCeEEECCCCCEEEec-CC-cEEEECC-CCCEEEEEECCCceeEEEEeCC
Confidence                689999875321           1122357889999965544 34 4999998 4556666665556889999999


Q ss_pred             CCEEEEEcCC
Q psy10953        140 GDKFVSVGED  149 (181)
Q Consensus       140 g~~l~~~~~d  149 (181)
                      ++.|+.++.+
T Consensus       288 ~~~L~it~~~  297 (305)
T 3dr2_A          288 QQRLFITGGP  297 (305)
T ss_dssp             SCEEEEEETT
T ss_pred             CCEEEEEcCC
Confidence            9988887765

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.94  E-value=7.9e-08  Score=77.73  Aligned_cols=146  Identities=13%  Similarity=0.137  Sum_probs=106.3

Q ss_pred             eEEEEEE-c-CCCCEEEEEe------------------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee
Q psy10953         13 DMWNVVF-S-PDDKYVLSGS------------------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA   72 (181)
Q Consensus        13 ~~~~~~~-s-~~g~~l~~~~------------------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~   72 (181)
                      ....+++ + |+++++++++                  .++.+.+.|.++.+....+...+. ...+.++|||+++++.+
T Consensus       135 ~phg~~~~~~p~~~~v~~~~~~~~p~~~dg~~l~~~~~~~~~vtvID~~t~~v~~qI~Vgg~-pd~~~~spdGk~~~vt~  213 (595)
T 1fwx_A          135 GIHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTS  213 (595)
T ss_dssp             SEEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGGGEEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEE
T ss_pred             CCcceeeeecCCCcEEEEecccccccCCCCcccccccccCceEEEEECCCCeEEEEEEeCCC-ccceEECCCCCEEEEEe
Confidence            3568887 5 9999998884                  345799999999888876665443 24678999999998877


Q ss_pred             CCC--------------------------------------cEEEEeCCC--CCc--c------cEEEEEEcCCCCEEEE
Q psy10953         73 LDG--------------------------------------IINIFDANT--GHS--S------WVLSTAFTRDGKFFIS  104 (181)
Q Consensus        73 ~d~--------------------------------------~v~i~d~~~--~~~--~------~v~~~~~s~~~~~l~~  104 (181)
                      .+.                                      .|.+.|..+  +..  .      ...++.++|||++++.
T Consensus       214 ~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg~~PhGv~~sPDGk~v~V  293 (595)
T 1fwx_A          214 YNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCV  293 (595)
T ss_dssp             SCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEESSCCCEEECTTSSEEEE
T ss_pred             cCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecCCCceEEEEcCCCCEEEE
Confidence            553                                      366667665  221  1      1235789999997766


Q ss_pred             Ee-CCCcEEEEecCCCc------------eeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        105 AS-ADHTVRVWNFARRE------------NMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       105 ~~-~d~~i~v~d~~~~~------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      ++ .+.+|.++|+.+.+            ...+.......+.++|+|+|..+++.-.|+.|.+|++..
T Consensus       294 ~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~kwdi~~  361 (595)
T 1fwx_A          294 AGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIED  361 (595)
T ss_dssp             ECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHHH
T ss_pred             eCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEEEEEhhH
Confidence            66 57899999998642            233444556789999999994455566799999999866

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.92  E-value=5.1e-08  Score=80.74  Aligned_cols=149  Identities=13%  Similarity=0.172  Sum_probs=111.5

Q ss_pred             EEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCcEEEEEecCCc---------eEEEEEECCCC--
Q psy10953         16 NVVFSPDDKYVLSGSQSG-------------------KINLYGVETGKLEQIFDTRGK---------FTLSIAYSTDG--   65 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~~~~~~---------~~~~~~~s~d~--   65 (181)
                      .++++|++.+++.+..++                   .|..+|.++|+.+-.++....         ....+....+|  
T Consensus       247 ~~~~d~~~~~vy~~~~~~~~w~~~~~~~~~gd~~~~~sv~AlD~~TG~~~W~~~~~~~d~wd~~~~~~p~l~~~~~dG~~  326 (677)
T 1kb0_A          247 SMTFDAELNTMYVGTGNGSPWSHKVRSPKGGDNLYLASIVALDPDTGKYKWHYQETPGDNWDYTSTQPMILADIKIAGKP  326 (677)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCCEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEECCCCccccCCCCCccCCCCeeeEEEEEEECCCCCEEEEEecCCCcccccccCCCcEEEecccCCcE
Confidence            467899999988877654                   599999999998876664211         11123333477  


Q ss_pred             -CEEEEeeCCCcEEEEeCCCCCccc---------E----------------------------------EEEEEcCCCCE
Q psy10953         66 -HWIASGALDGIINIFDANTGHSSW---------V----------------------------------LSTAFTRDGKF  101 (181)
Q Consensus        66 -~~l~~~~~d~~v~i~d~~~~~~~~---------v----------------------------------~~~~~s~~~~~  101 (181)
                       ..++.++.+|.++++|..+++..+         .                                  ..++++|++.+
T Consensus       327 ~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~dp~~~~  406 (677)
T 1kb0_A          327 RKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFNPQTGL  406 (677)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEETTTTE
T ss_pred             eeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEcCCCCE
Confidence             678889999999999998764211         0                                  03578888777


Q ss_pred             EEEEeC-------------------------------------------CCcEEEEecCCCceeeeeecCCcEEEEEEcc
Q psy10953        102 FISASA-------------------------------------------DHTVRVWNFARRENMHTFKHADQVWCVCVAP  138 (181)
Q Consensus       102 l~~~~~-------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp  138 (181)
                      +++...                                           .+.|+.||+.+++...++++...+++..++.
T Consensus       407 ~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~g~~~~  486 (677)
T 1kb0_A          407 VYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNGGTLTT  486 (677)
T ss_dssp             EEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCCCEEEE
T ss_pred             EEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcCcceEe
Confidence            665432                                           2679999999999988888766677777788


Q ss_pred             CCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        139 DGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       139 ~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ++..++.++.|+.+++||..+++.+-
T Consensus       487 ~g~~v~~g~~dg~l~a~D~~tG~~lw  512 (677)
T 1kb0_A          487 AGNVVFQGTADGRLVAYHAATGEKLW  512 (677)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCceee
Confidence            88899989999999999999988764

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.91  E-value=9e-08  Score=79.42  Aligned_cols=148  Identities=14%  Similarity=0.261  Sum_probs=109.5

Q ss_pred             EEEEcCCCCEEEEEeCCCc-------------------EEEEeCCCCcEEEEEecCCc---------eEEEEEECCCCC-
Q psy10953         16 NVVFSPDDKYVLSGSQSGK-------------------INLYGVETGKLEQIFDTRGK---------FTLSIAYSTDGH-   66 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~-------------------i~~~d~~~~~~~~~~~~~~~---------~~~~~~~s~d~~-   66 (181)
                      .++++|++.+++.+..++.                   |..+|.++|+.+-.++....         .........+|+ 
T Consensus       239 ~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~  318 (689)
T 1yiq_A          239 SFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIVAVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKP  318 (689)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEEEEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcE
Confidence            5788899999988887753                   99999999998876654211         111122223565 


Q ss_pred             --EEEEeeCCCcEEEEeCCCCCcc---------cEE--------------------------------------EEEEcC
Q psy10953         67 --WIASGALDGIINIFDANTGHSS---------WVL--------------------------------------STAFTR   97 (181)
Q Consensus        67 --~l~~~~~d~~v~i~d~~~~~~~---------~v~--------------------------------------~~~~s~   97 (181)
                        .++.++.+|.++++|..+++..         +..                                      .++|+|
T Consensus       319 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~~~~~~~pi~~~~~~~~~~~~~~~~~~p~~~Gg~~w~~~a~dp  398 (689)
T 1yiq_A          319 RKVLMQAPKNGFFYVIDRATGELLSAKGIVPQSWTKGMDMKTGRPILDEENAAYWKNGKRNLVTPAFWGAHDWQPMSYNP  398 (689)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEEETTTTEEEECHHHHCTTTSSSCEEESSCTTCSSCSSCCEEET
T ss_pred             EEEEEEECCCCeEEEEECCCCCEeccccccccccccccCccCCCcccchhhccccCCCCeeEeCCCcccccCCCcceECC
Confidence              6888999999999999876531         111                                      157888


Q ss_pred             CCCEEEEEeC---------------------------------------------CCcEEEEecCCCceeeeeecCCcEE
Q psy10953         98 DGKFFISASA---------------------------------------------DHTVRVWNFARRENMHTFKHADQVW  132 (181)
Q Consensus        98 ~~~~l~~~~~---------------------------------------------d~~i~v~d~~~~~~~~~~~~~~~v~  132 (181)
                      +..+++....                                             ++.++.||+.+++...++++....+
T Consensus       399 ~~~~~yv~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~  478 (689)
T 1yiq_A          399 DTGLVYIPAHIMSAYYEHIPEAPKRNPFKSMYQLGLRTGMMPEGAEGLLEMAKSWSGKLIAWDPVKQQAAWEVPYVTIFN  478 (689)
T ss_dssp             TTTEEEEEEEECCEEEECCSSCCCCCSCTTSCCCSSEECCCCSSHHHHHHHHTTCEEEEEEEETTTTEEEEEEEESSSCC
T ss_pred             CCCEEEEeccccceeeeeccccccccccccccccCccccccCcccccCCCCCCCcceeEEEEECCCCCeEeEccCCCCcc
Confidence            8776665421                                             3679999999999988887666566


Q ss_pred             EEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        133 CVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       133 ~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ...++..+..++.++.|+.++.||..+|+++
T Consensus       479 ~g~~~tagglvf~gt~dg~l~a~D~~tG~~l  509 (689)
T 1yiq_A          479 GGTLSTAGNLVFEGSADGRVIAYAADTGEKL  509 (689)
T ss_dssp             CCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CccceECCCEEEEECCCCcEEEEECCCCccc
Confidence            5567778889999999999999999999876

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.89  E-value=2.9e-07  Score=67.31  Aligned_cols=151  Identities=13%  Similarity=0.111  Sum_probs=103.7

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCCccc
Q psy10953         14 MWNVVFSPDDKYVLSGSQSG--KINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIASG-ALDGIINIFDANTGHSSW   89 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~~~~   89 (181)
                      .-.+.|+ ++.+..+++.++  .|+.+|+++++.+..+..... +...+.+  ++..|... -.++.+.+||..+.....
T Consensus        45 tqGL~~~-~~~LyestG~~g~S~v~~vD~~Tgkv~~~~~l~~~~FgeGit~--~g~~ly~ltw~~~~v~v~D~~t~~~~~  121 (262)
T 3nol_A           45 TEGFFYR-NGYFYESTGLNGRSSIRKVDIESGKTLQQIELGKRYFGEGISD--WKDKIVGLTWKNGLGFVWNIRNLRQVR  121 (262)
T ss_dssp             EEEEEEE-TTEEEEEEEETTEEEEEEECTTTCCEEEEEECCTTCCEEEEEE--ETTEEEEEESSSSEEEEEETTTCCEEE
T ss_pred             cceEEEE-CCEEEEECCCCCCceEEEEECCCCcEEEEEecCCccceeEEEE--eCCEEEEEEeeCCEEEEEECccCcEEE
Confidence            3568888 676667777766  899999999999887765433 2234444  45555544 458899999997654221


Q ss_pred             E-----EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC------CcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         90 V-----LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA------DQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        90 v-----~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      .     ...+++++++.|+.+..+..|.++|..+.+.+..+.-.      ..++.+.+. +|+.++..-.++.|.+.|..
T Consensus       122 ti~~~~eG~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~  200 (262)
T 3nol_A          122 SFNYDGEGWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTITVTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPE  200 (262)
T ss_dssp             EEECSSCCCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTT
T ss_pred             EEECCCCceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEEeccCCccccccceeEEE-CCEEEEEEccCCeEEEEECC
Confidence            1     11345567776666666778999999998877776421      234567776 77655555568899999999


Q ss_pred             CCeeEEEcCC
Q psy10953        159 PEEEVEVNGG  168 (181)
Q Consensus       159 ~~~~~~~~~~  168 (181)
                      +++.+....-
T Consensus       201 tG~V~~~Id~  210 (262)
T 3nol_A          201 TGKVTGIIDL  210 (262)
T ss_dssp             TCBEEEEEEC
T ss_pred             CCcEEEEEEC
Confidence            9987765444

>2qe8_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE UNL PG4; 1.35A {Anabaena variabilis atcc 29413}

Probab=98.88  E-value=5.2e-08  Score=74.02  Aligned_cols=143  Identities=10%  Similarity=0.144  Sum_probs=98.0

Q ss_pred             EEEEEEcCCCCEE-EEEe---CCCcEEEEeCCCCcEEEEEecC-------------C----------------ceEEEEE
Q psy10953         14 MWNVVFSPDDKYV-LSGS---QSGKINLYGVETGKLEQIFDTR-------------G----------------KFTLSIA   60 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~---~d~~i~~~d~~~~~~~~~~~~~-------------~----------------~~~~~~~   60 (181)
                      +.+++++|++..+ ++-.   .++.|.+||..+++....+..+             +                .....++
T Consensus       122 ~~~v~vd~~~g~~yvtd~~~~~~~~i~v~d~~~g~~~r~~~~~~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~~~gia  201 (343)
T 2qe8_A          122 VNDLAVDLIHNFVYISDPAPDDKAALIRVDLQTGLAARVLQGYPGIAPEDIDLVIDGVPVQIGQPDGTVIRPHLGVNGIV  201 (343)
T ss_dssp             CCEEEEETTTTEEEEEECCSGGGCEEEEEETTTCCEEEECTTCTTTSCCSCCCEETTEECBEECTTSCEECCCCCEEEEE
T ss_pred             cceEEEecCCCEEEEEcCccCCCCeEEEEECCCCCEEEEecCCCcccccccceeECCEEEEeccCCCceeceecccceeE
Confidence            4688999865555 4444   5789999999888776654221             0                1246799


Q ss_pred             ECCCCCEEEEeeCCC-cEEEEeCC---C---------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce
Q psy10953         61 YSTDGHWIASGALDG-IINIFDAN---T---------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN  121 (181)
Q Consensus        61 ~s~d~~~l~~~~~d~-~v~i~d~~---~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~  121 (181)
                      ++|||+.|+.+..++ .++.++..   .               ++......++++++|+++++...++.|.+||..+++.
T Consensus       202 ~s~dg~~ly~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~~g~pdgia~d~~G~l~va~~~~~~V~~~d~~~G~~  281 (343)
T 2qe8_A          202 LDAENEWLYLSPMHSTSMYRIKSADLSNLQLTDAELGSKIERYSEKPICDGISIDKDHNIYVGDLAHSAIGVITSADRAY  281 (343)
T ss_dssp             ECTTSCEEEEEESSCSEEEEEEHHHHTCTTCCHHHHHTTCEEEEECCSCSCEEECTTCCEEEEEGGGTEEEEEETTTTEE
T ss_pred             eccCCCEEEEEeCCCCeEEEEEHHHhcCCCCChhhhhcceEecccCCCCceEEECCCCCEEEEccCCCeEEEEECCCCCE
Confidence            999999888876655 55555431   1               1112345689999999999988899999999855543


Q ss_pred             eeeee--cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953        122 MHTFK--HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus       122 ~~~~~--~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      .....  ....+.+++|+++|+.+++.+..+.+.+|.
T Consensus       282 ~~~~~~~~~~~p~~va~~~~g~l~v~~~~~~~~~~f~  318 (343)
T 2qe8_A          282 KLLVTDEKLSWTDSFNFGSDGYLYFDCNQLHHSAPLN  318 (343)
T ss_dssp             EEEEECGGGSCEEEEEECTTSCEEEEECCGGGSGGGB
T ss_pred             EEEEECCceecCCeeEECCCCcEEEEeCccccccccc
Confidence            22222  234588999999999888887665554443

>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*

Probab=98.87  E-value=2.4e-07  Score=76.77  Aligned_cols=148  Identities=11%  Similarity=0.112  Sum_probs=96.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCc-------------EEEEeCCCCcE--EEEEecCC---ceEEEEEECCCCCEEEEee---
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGK-------------INLYGVETGKL--EQIFDTRG---KFTLSIAYSTDGHWIASGA---   72 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~-------------i~~~d~~~~~~--~~~~~~~~---~~~~~~~~s~d~~~l~~~~---   72 (181)
                      ...++|+ ||+.|+.+..+..             |++|++.+++.  ..++....   ....++.+||||++|+...   
T Consensus       177 ~~~~~Ws-Dg~~l~y~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~~v~~~~~~~~~~~~~~~~SpDg~~l~~~~~~~  255 (693)
T 3iuj_A          177 FSGISWL-GNEGFFYSSYDKPDGSELSARTDQHKVYFHRLGTAQEDDRLVFGAIPAQHHRYVGATVTEDDRFLLISAANS  255 (693)
T ss_dssp             SCCCEEE-TTTEEEEEESSCCC-------CCCCEEEEEETTSCGGGCEEEESCSGGGCCSEEEEEECTTSCEEEEEEESS
T ss_pred             eccEEEe-CCCEEEEEEecCcccccccccCCCcEEEEEECCCCcccceEEEecCCCCCeEEEEEEEcCCCCEEEEEEccC
Confidence            3578999 9999998887743             99999987653  23333222   2355789999999886543   


Q ss_pred             -CCCcEEEEeCCCCCc---------ccEEEEEEcCCCCEE-EEEeCC---CcEEEEecCCCce---eeeeecCCcEEEEE
Q psy10953         73 -LDGIINIFDANTGHS---------SWVLSTAFTRDGKFF-ISASAD---HTVRVWNFARREN---MHTFKHADQVWCVC  135 (181)
Q Consensus        73 -~d~~v~i~d~~~~~~---------~~v~~~~~s~~~~~l-~~~~~d---~~i~v~d~~~~~~---~~~~~~~~~v~~~~  135 (181)
                       ..+.++++|+.++..         ...... ++++|..| +....+   +.|..+|+.++..   .....+...+.  .
T Consensus       256 ~~~~~i~~~d~~~~~~~~~~l~~~~~~~~~~-~~~~g~~l~~~t~~~~~~~~l~~~d~~~~~~~~~~~l~~~~~~~~--~  332 (693)
T 3iuj_A          256 TSGNRLYVKDLSQENAPLLTVQGDLDADVSL-VDNKGSTLYLLTNRDAPNRRLVTVDAANPGPAHWRDLIPERQQVL--T  332 (693)
T ss_dssp             SSCCEEEEEETTSTTCCCEEEECSSSSCEEE-EEEETTEEEEEECTTCTTCEEEEEETTSCCGGGCEEEECCCSSCE--E
T ss_pred             CCCcEEEEEECCCCCCceEEEeCCCCceEEE-EeccCCEEEEEECCCCCCCEEEEEeCCCCCccccEEEecCCCCEE--E
Confidence             235899999865421         112222 56666644 444433   5799999987643   22234444444  8


Q ss_pred             EccCCCEEEEEcCCC---cEEEEeCCCCeeEEE
Q psy10953        136 VAPDGDKFVSVGEDK---AVHMYSYKPEEEVEV  165 (181)
Q Consensus       136 ~sp~g~~l~~~~~d~---~v~i~~~~~~~~~~~  165 (181)
                      ++++++.|+....++   .|++|++..+....+
T Consensus       333 ~s~~g~~lv~~~~~~g~~~l~~~d~~g~~~~~l  365 (693)
T 3iuj_A          333 VHSGSGYLFAEYMVDATARVEQFDYEGKRVREV  365 (693)
T ss_dssp             EEEETTEEEEEEEETTEEEEEEECTTSCEEEEE
T ss_pred             EEEECCEEEEEEEECCeeEEEEEECCCCeeEEe
Confidence            899999988777543   688898875544333

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.86  E-value=2.1e-07  Score=72.98  Aligned_cols=133  Identities=11%  Similarity=0.120  Sum_probs=92.3

Q ss_pred             EEEEEcCCCCEEEEEe-------------------CCCcEEEEeCCCCcEEEEEecC--CceEEEEEE--CCCCCEEEEe
Q psy10953         15 WNVVFSPDDKYVLSGS-------------------QSGKINLYGVETGKLEQIFDTR--GKFTLSIAY--STDGHWIASG   71 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~-------------------~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~--s~d~~~l~~~   71 (181)
                      +++.|+|+++.++++.                   ...+|.+||+.+++.++.+...  +.....+.|  +|++++++.+
T Consensus       191 Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~~P~~i~f~~~Pdg~~aYV~  270 (462)
T 2ece_A          191 YDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENRMALELRPLHDPTKLMGFIN  270 (462)
T ss_dssp             CCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEEEEEEEEECSSTTCCEEEEE
T ss_pred             ceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCCccceeEeeECCCCCEEEEE
Confidence            4578899999888885                   3689999999999888877653  122334444  9999988776


Q ss_pred             eC------CCcEEEEe-------------CCCCC---------------cccEEEEEEcCCCCEEEEEeC-CCcEEEEec
Q psy10953         72 AL------DGIINIFD-------------ANTGH---------------SSWVLSTAFTRDGKFFISASA-DHTVRVWNF  116 (181)
Q Consensus        72 ~~------d~~v~i~d-------------~~~~~---------------~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~  116 (181)
                      ..      ++.|.+|.             +....               ...+..+.+||||++|.++.. .+.|.+||+
T Consensus       271 ~e~~~~~Lss~V~v~~~d~g~~~~~~vIdi~~~~v~~~lp~~~~~f~~~~~~pa~I~lS~DGrfLYVSnrg~d~VavfdV  350 (462)
T 2ece_A          271 MVVSLKDLSSSIWLWFYEDGKWNAEKVIEIPAEPLEGNLPEILKPFKAVPPLVTDIDISLDDKFLYLSLWGIGEVRQYDI  350 (462)
T ss_dssp             EEEETTTCCEEEEEEEEETTEEEEEEEEEECCEECCSSCCGGGGGGTEECCCCCCEEECTTSCEEEEEETTTTEEEEEEC
T ss_pred             EeeeccCCCceEEEEEecCCceeEEEEEeCCCccccccccccccccccCCCceeEEEECCCCCEEEEEeCCCCEEEEEEe
Confidence            64      45665432             22110               134577899999997766664 678999998


Q ss_pred             CCC---ceeeeeecC---------------CcEEEEEEccCCCEEEEEc
Q psy10953        117 ARR---ENMHTFKHA---------------DQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       117 ~~~---~~~~~~~~~---------------~~v~~~~~sp~g~~l~~~~  147 (181)
                      ...   +.+..+.-.               .....++++|||++++++.
T Consensus       351 ~d~~~~~lv~~I~tGG~~~~~~~~~G~~~~ggPr~~~lSpDGk~LyVaN  399 (462)
T 2ece_A          351 SNPFKPVLTGKVKLGGIFHRADHPAGHKLTGAPQMLEISRDGRRVYVTN  399 (462)
T ss_dssp             SSTTSCEEEEEEECBTTTTCBCCTTSCCCCSCCCCEEECTTSSEEEEEC
T ss_pred             cCCCCcEEEEEEEeCCeeccccccccccCCCCCCEEEEcCCCCEEEEEc
Confidence            532   333333322               1367899999999998888

>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A

Probab=98.84  E-value=1.8e-07  Score=75.64  Aligned_cols=147  Identities=16%  Similarity=0.196  Sum_probs=100.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCC--------------------------------------cEEEEeCCC--CcE-EEEEecC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSG--------------------------------------KINLYGVET--GKL-EQIFDTR   52 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~--------------------------------------~i~~~d~~~--~~~-~~~~~~~   52 (181)
                      .-.++++|||+++++++.+.                                      .|.+.|.++  ++. ...+...
T Consensus       197 pd~~~~spdGk~~~vt~~~se~~~~i~~~~~~~~d~v~V~~~~~~~~~v~~Gk~~~i~~V~VID~~~~~~~~~~~~Ipvg  276 (595)
T 1fwx_A          197 LDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIA  276 (595)
T ss_dssp             CCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGGGCCSSEEEEEEE
T ss_pred             ccceEECCCCCEEEEEecCcccCcchhhccccccceEEEeeccceeEeccCCCeeEECcEEEEeCcccCCceeEEEEecC
Confidence            35688999999998887543                                      477888876  444 3444332


Q ss_pred             CceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCC-------------------cccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         53 GKFTLSIAYSTDGHWIAS-GALDGIINIFDANTGH-------------------SSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        53 ~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~-------------------~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                      .. ..++.++|||+++++ +..+.+|.++|..+..                   ......++|+|+|..+++...+..|.
T Consensus       277 ~~-PhGv~~sPDGk~v~V~~~~s~~VsVid~~~~~~~~~~~l~~~~~v~~~v~vG~gP~h~aF~~dG~aY~t~~ldsqV~  355 (595)
T 1fwx_A          277 NN-PHGCNMAPDKKHLCVAGKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVV  355 (595)
T ss_dssp             SS-CCCEEECTTSSEEEEECTTSSBEEEEEGGGHHHHHHSCCCGGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEE
T ss_pred             CC-ceEEEEcCCCCEEEEeCCCCCeEEEEECcccccccccccCcccceEEEcCCCCCcceEEECCCCeEEEEEecCCcEE
Confidence            22 237899999998766 4568899999987421                   13468899999996667777899999


Q ss_pred             EEecCC----------CceeeeeecCCcE--E----EEEEccCCCEEEEEcC---CCcE----------EEEeCCCCe
Q psy10953        113 VWNFAR----------RENMHTFKHADQV--W----CVCVAPDGDKFVSVGE---DKAV----------HMYSYKPEE  161 (181)
Q Consensus       113 v~d~~~----------~~~~~~~~~~~~v--~----~~~~sp~g~~l~~~~~---d~~v----------~i~~~~~~~  161 (181)
                      +||+..          ...+..+.-...+  .    +..++|||++|++...   |+.+          +++++..++
T Consensus       356 kwdi~~a~~~~~g~~~~~vi~kidV~yqpGh~~~~~g~t~~~DGk~l~~~Nk~skdr~~~~gp~~~~~~ql~dis~~~  433 (595)
T 1fwx_A          356 KWNIEDAIRAYAGEKVDPIKDKLDVHYQPGHLKTVMGETLDATNDWLVCLSKFSKDRFLNVGPLKPENDQLIDISGDK  433 (595)
T ss_dssp             EEEHHHHHHHHHTCSCCCEEEEEECSSCEEEEEETTTTSTTCCSSEEEEEESCCTTSSCCCCSSCCEEEEEEECSSSS
T ss_pred             EEEhhHhhhhhcccccceeEEEeecccccccceeccceEeCCCCCEEEEcCCCCccccccCCCCCCCcceEEEcCCCc
Confidence            999866          3444454422222  1    2345899999988764   3321          889985443

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.84  E-value=6.1e-07  Score=65.70  Aligned_cols=150  Identities=9%  Similarity=0.074  Sum_probs=102.7

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccE---
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWV---   90 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v---   90 (181)
                      -.+.|+ ++.+..+.+.++.|+.+|+++++.+..+ .... +...+.+..+ +..+..-.++.+.+||..+......   
T Consensus        58 qGL~~~-~~~Ly~stG~~g~v~~iD~~Tgkv~~~~-l~~~~FgeGit~~g~-~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~  134 (268)
T 3nok_A           58 QGLVFH-QGHFFESTGHQGTLRQLSLESAQPVWME-RLGNIFAEGLASDGE-RLYQLTWTEGLLFTWSGMPPQRERTTRY  134 (268)
T ss_dssp             EEEEEE-TTEEEEEETTTTEEEECCSSCSSCSEEE-ECTTCCEEEEEECSS-CEEEEESSSCEEEEEETTTTEEEEEEEC
T ss_pred             ceEEEE-CCEEEEEcCCCCEEEEEECCCCcEEeEE-CCCCcceeEEEEeCC-EEEEEEccCCEEEEEECCcCcEEEEEeC
Confidence            567786 4566678888899999999999998776 4332 3334555432 3333455688999999976432111   


Q ss_pred             --EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec---C---CcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         91 --LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH---A---DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        91 --~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~---~---~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                        ...+++++++.|+.+..++.|+++|..+.+.+..+.-   .   ..++.+.+. +|+.++..-..+.|.+.|..+++.
T Consensus       135 ~~eGwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V  213 (268)
T 3nok_A          135 SGEGWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQVKLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTV  213 (268)
T ss_dssp             SSCCCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBE
T ss_pred             CCceeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEeCCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcE
Confidence              1123456788777777788999999999887777652   1   235667776 776555555678999999999877


Q ss_pred             EEEcCC
Q psy10953        163 VEVNGG  168 (181)
Q Consensus       163 ~~~~~~  168 (181)
                      +....-
T Consensus       214 ~~~Idl  219 (268)
T 3nok_A          214 VGVIDA  219 (268)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            665444

>2hz6_A Endoplasmic reticulum to nucleus signalling 1 isoform 1 variant; triangular beta-sheet cluster, signaling protein; 3.10A {Homo sapiens}

Probab=98.81  E-value=3e-10  Score=87.54  Aligned_cols=143  Identities=13%  Similarity=0.081  Sum_probs=77.7

Q ss_pred             EcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEE-EEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEE----E
Q psy10953         19 FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTL-SIAYSTDGHWIASGALDGIINIFDANTGHSSWVL----S   92 (181)
Q Consensus        19 ~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~-~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~----~   92 (181)
                      +.++++.+++++.|+.|+.||.++++.+..+..+.. .+. +..+. ++..+++++.++.++.||+.++...+..    .
T Consensus        45 ~~~~g~~~v~~s~dg~l~a~d~~tG~~~w~~~~~~~~~~~~sp~~~-~~~~v~~g~~dg~v~a~D~~tG~~~w~~~~~~~  123 (369)
T 2hz6_A           45 THVEEPAFLPDPNDGSLYTLGSKNNEGLTKLPFTIPELVQASPCRS-SDGILYMGKKQDIWYVIDLLTGEKQQTLSSAFA  123 (369)
T ss_dssp             -----CCEEECTTTCCEEEC-----CCSEECSCCHHHHHTTCSCC------CCCCEEEEEEEEECCC-------------
T ss_pred             eEcCCCEEEEeCCCCEEEEEECCCCceeeeeeccCccccccCceEe-cCCEEEEEeCCCEEEEEECCCCcEEEEecCCCc
Confidence            445777788888999999999998887655433211 110 11111 3456777888999999999877543321    2


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCC---CEEEEEcCCCcEEEEeCCCCeeE
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDG---DKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g---~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ..++|++..+++++.++.++.||.++++.+..+.... ....+++++.   ..+++++.++.++.||..+++.+
T Consensus       124 ~~~~p~~~~v~~~~~dg~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~v~~~~~dg~v~a~d~~tG~~~  196 (369)
T 2hz6_A          124 DSLSPSTSLLYLGRTEYTITMYDTKTRELRWNATYFD-YAASLPEDDVDYKMSHFVSNGDGLVVTVDSESGDVL  196 (369)
T ss_dssp             ---------EEEEEEEEEEECCCSSSSSCCCEEEEEE-ECCBCCCCCTTCCCCEEEEETSCEEEEECTTTCCEE
T ss_pred             ccccccCCEEEEEecCCEEEEEECCCCCEEEeEeccc-ccCccccCCccccceEEEECCCCEEEEEECCCCcEE
Confidence            3567788888888989999999999988776654221 2223334432   56777888999999999887654

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.78  E-value=1e-05  Score=59.00  Aligned_cols=156  Identities=10%  Similarity=0.021  Sum_probs=99.5

Q ss_pred             eeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCCCCC-
Q psy10953         12 VDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDANTGH-   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~~~~-   86 (181)
                      .....++++|++..|+ +-...+.|.+++...................++++|++..|+.+..   .+.|..+++.... 
T Consensus        79 ~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~~  158 (267)
T 1npe_A           79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (267)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             CCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEEEECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCCc
Confidence            3567899999766555 4455678999998754433333222233468999997666555443   4678888765321 


Q ss_pred             -------cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         87 -------SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                             ......++++|+++ ++++-...+.|.++|+................++++. .+..+++....+.|..++..
T Consensus       159 ~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~~~~~~~P~gi~~d-~~~lyva~~~~~~v~~~d~~  237 (267)
T 1npe_A          159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (267)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             EEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEecCCCceEEEecCCCCceEEEEe-CCEEEEEECCCCeEEEEeCC
Confidence                   23467899999866 4455556788999998754433333323345667664 34444444456899999998


Q ss_pred             CCeeEEEcCC
Q psy10953        159 PEEEVEVNGG  168 (181)
Q Consensus       159 ~~~~~~~~~~  168 (181)
                      ++..+.....
T Consensus       238 ~g~~~~~i~~  247 (267)
T 1npe_A          238 ISKEMDTFHP  247 (267)
T ss_dssp             TTEEEEEECC
T ss_pred             CCCceEEEcc
Confidence            8877765543

>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*

Probab=98.78  E-value=7.8e-07  Score=65.42  Aligned_cols=137  Identities=9%  Similarity=-0.004  Sum_probs=99.7

Q ss_pred             EcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc---------
Q psy10953         19 FSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS---------   87 (181)
Q Consensus        19 ~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~---------   87 (181)
                      +.++|+.|+ +.-.++.+.++|..+.+.+..+... +.   .+.+++||+.++.+..++.++++|..+...         
T Consensus        71 i~~~g~~lyv~t~~~~~v~viD~~t~~v~~~i~~g~~~---g~glt~Dg~~l~vs~gs~~l~viD~~t~~v~~~I~Vg~~  147 (266)
T 2iwa_A           71 LTLLNEKLYQVVWLKNIGFIYDRRTLSNIKNFTHQMKD---GWGLATDGKILYGSDGTSILYEIDPHTFKLIKKHNVKYN  147 (266)
T ss_dssp             EEEETTEEEEEETTCSEEEEEETTTTEEEEEEECCSSS---CCEEEECSSSEEEECSSSEEEEECTTTCCEEEEEECEET
T ss_pred             EEEeCCEEEEEEecCCEEEEEECCCCcEEEEEECCCCC---eEEEEECCCEEEEECCCCeEEEEECCCCcEEEEEEECCC
Confidence            333455554 4556789999999999988877643 22   234566888787777788999999876421         


Q ss_pred             ----ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--------------CcEEEEEEccCCCEE-EEEcC
Q psy10953         88 ----SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA--------------DQVWCVCVAPDGDKF-VSVGE  148 (181)
Q Consensus        88 ----~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v~~~~~sp~g~~l-~~~~~  148 (181)
                          ...+.+.|. +|+.++....++.|.+.|.++++.+..+...              ...++++++|+++.+ +++..
T Consensus       148 ~~p~~~~nele~~-dg~lyvn~~~~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~~~~~lfVTgk~  226 (266)
T 2iwa_A          148 GHRVIRLNELEYI-NGEVWANIWQTDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQENKRIFVTGKL  226 (266)
T ss_dssp             TEECCCEEEEEEE-TTEEEEEETTSSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEETTTTEEEEEETT
T ss_pred             CcccccceeEEEE-CCEEEEecCCCCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcCCCCEEEEECCC
Confidence                124566777 7877777777889999999999887777532              356899999998765 55556


Q ss_pred             CCcEEEEeCCC
Q psy10953        149 DKAVHMYSYKP  159 (181)
Q Consensus       149 d~~v~i~~~~~  159 (181)
                      .+.+...++.+
T Consensus       227 ~~~v~~i~l~~  237 (266)
T 2iwa_A          227 WPKLFEIKLHL  237 (266)
T ss_dssp             CSEEEEEEEEE
T ss_pred             CCeEEEEEEec
Confidence            78888888754

>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1

Probab=98.75  E-value=1.2e-05  Score=58.53  Aligned_cols=148  Identities=9%  Similarity=-0.021  Sum_probs=97.2

Q ss_pred             eEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCC----
Q psy10953         13 DMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGH----   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~----   86 (181)
                      ....++++|+++.|+ +-...+.|..++..++.....+.........+++++++..|+.+ ...+.|.++++....    
T Consensus        37 ~~~gi~~d~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~p~~ia~d~~~~~lyv~d~~~~~I~~~~~~g~~~~~~  116 (267)
T 1npe_A           37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (267)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEecCCCEEEEEECCCCEEEEEecCCCCcEEEEECCCCCccEEEEEecCCeEEEEECCCCEEEEEEcCCCCEEEE
Confidence            457899999766655 44457899999998665544443222345689999976655544 456789998875321    


Q ss_pred             ----cccEEEEEEcCCCC-EEEEEeC--CCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEc-CCCcEEEEe
Q psy10953         87 ----SSWVLSTAFTRDGK-FFISASA--DHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVG-EDKAVHMYS  156 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~-~l~~~~~--d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~  156 (181)
                          ......++++|++. ++++...  .+.|..+++.... ...+.  .......++++|++++|+.+. ..+.|..++
T Consensus       117 ~~~~~~~P~~i~vd~~~g~lyv~~~~~~~~~I~~~~~dg~~-~~~~~~~~~~~P~gia~d~~~~~lyv~d~~~~~I~~~~  195 (267)
T 1npe_A          117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTN-RRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLN  195 (267)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCC-CEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EECCCCCccEEEEeeCCCEEEEEECCCCCcEEEEEecCCCC-cEEEEECCCCCCcEEEEcCCCCEEEEEECCCCEEEEEe
Confidence                13568899999654 4444433  4678888875432 22221  224578999999877665444 567999999


Q ss_pred             CCCCe
Q psy10953        157 YKPEE  161 (181)
Q Consensus       157 ~~~~~  161 (181)
                      .....
T Consensus       196 ~~g~~  200 (267)
T 1npe_A          196 PAQPG  200 (267)
T ss_dssp             TTEEE
T ss_pred             cCCCc
Confidence            87543

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.74  E-value=1.1e-06  Score=69.08  Aligned_cols=146  Identities=11%  Similarity=0.162  Sum_probs=97.9

Q ss_pred             eEEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CC----cEEEEeCCCCC
Q psy10953         13 DMWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DG----IINIFDANTGH   86 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~----~v~i~d~~~~~   86 (181)
                      ....++++| ++..|+.+...+.|+.+|..++++..... .......++++++|++|+.+.. ++    .+.+++.....
T Consensus       138 ~P~~lavdp~~~g~Lyv~d~~~~I~~id~~~~~v~~~~~-~~~~P~~ia~d~~G~~lyvad~~~~~~~~~v~~~~~~g~~  216 (430)
T 3tc9_A          138 GAVWLSFDPKNHNHLYLVGEQHPTRLIDFEKEYVSTVYS-GLSKVRTICWTHEADSMIITNDQNNNDRPNNYILTRESGF  216 (430)
T ss_dssp             CCCEEEEETTEEEEEEEEEBTEEEEEEETTTTEEEEEEC-CCSCEEEEEECTTSSEEEEEECCSCTTSEEEEEEEGGGTS
T ss_pred             CCCEEEECCCCCCeEEEEeCCCcEEEEECCCCEEEEEec-CCCCcceEEEeCCCCEEEEEeCCCCcccceEEEEeCCCce
Confidence            346889998 46667666555889999998877665544 3334568999999996665543 11    34444433221


Q ss_pred             c--------ccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEE-EEEcCCCcEEE
Q psy10953         87 S--------SWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKF-VSVGEDKAVHM  154 (181)
Q Consensus        87 ~--------~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l-~~~~~d~~v~i  154 (181)
                      .        .....++++| +|.++++-..++.|+.++...+.......  .......++|+|+|+++ ++-...+.|..
T Consensus       217 ~~~~~l~~~~~p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~  296 (430)
T 3tc9_A          217 KVITELTKGQNCNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILR  296 (430)
T ss_dssp             CSEEEEEECSSCCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             eeeeeeccCCCceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEE
Confidence            1        2245678999 78877777778899999987665422222  22357799999999955 44456788999


Q ss_pred             EeCCC
Q psy10953        155 YSYKP  159 (181)
Q Consensus       155 ~~~~~  159 (181)
                      ++...
T Consensus       297 ~~~d~  301 (430)
T 3tc9_A          297 SDYDW  301 (430)
T ss_dssp             EEEET
T ss_pred             EeCCc
Confidence            88753

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.72  E-value=3.4e-06  Score=61.10  Aligned_cols=149  Identities=12%  Similarity=0.053  Sum_probs=100.1

Q ss_pred             EEEEEcCCCCEEEEEeCC--CcEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCcccE
Q psy10953         15 WNVVFSPDDKYVLSGSQS--GKINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIAS-GALDGIINIFDANTGHSSWV   90 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d--~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~~~~v   90 (181)
                      -.+.|++ +.+..+.+.+  ..|+.+|+++++.+..+..... +-..+.+.  +..|.. .-.++.+.+||..+......
T Consensus        24 qGL~~~~-~~LyestG~~g~S~v~~vD~~tgkv~~~~~l~~~~fgeGi~~~--~~~ly~ltw~~~~v~v~D~~tl~~~~t  100 (243)
T 3mbr_X           24 EGLFYLR-GHLYESTGETGRSSVRKVDLETGRILQRAEVPPPYFGAGIVAW--RDRLIQLTWRNHEGFVYDLATLTPRAR  100 (243)
T ss_dssp             EEEEEET-TEEEEEECCTTSCEEEEEETTTCCEEEEEECCTTCCEEEEEEE--TTEEEEEESSSSEEEEEETTTTEEEEE
T ss_pred             ccEEEEC-CEEEEECCCCCCceEEEEECCCCCEEEEEeCCCCcceeEEEEe--CCEEEEEEeeCCEEEEEECCcCcEEEE
Confidence            4788876 5555666665  4899999999999987765433 22344443  444444 45688999999976431110


Q ss_pred             -----EEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC------CcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953         91 -----LSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA------DQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus        91 -----~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~------~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                           ...+++++++.|..+..++.|.++|..+.+.+..+.-.      ..++.+.+. +|+.++..-..+.|.+.|..+
T Consensus       101 i~~~~~Gwglt~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~t  179 (243)
T 3mbr_X          101 FRYPGEGWALTSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKVTAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPAS  179 (243)
T ss_dssp             EECSSCCCEEEECSSCEEEECSSSEEEEECTTTCCEEEEEECEETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTT
T ss_pred             EeCCCCceEEeeCCCEEEEECCCCeEEEEeCCCCeEEEEEEEccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCC
Confidence                 12244567776666666889999999998877766521      245566655 676665555678999999999


Q ss_pred             CeeEEEcC
Q psy10953        160 EEEVEVNG  167 (181)
Q Consensus       160 ~~~~~~~~  167 (181)
                      ++.+....
T Consensus       180 G~V~~~id  187 (243)
T 3mbr_X          180 GKVVAWID  187 (243)
T ss_dssp             CBEEEEEE
T ss_pred             CCEEEEEE
Confidence            98776444

>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}

Probab=98.71  E-value=1.6e-06  Score=68.12  Aligned_cols=139  Identities=12%  Similarity=0.225  Sum_probs=97.0

Q ss_pred             CCCCEEE-EEeCCCcEEEEeCCCC----cEEEEEe------cCC-ceEEEEEECCCCCEEEEeeCC------CcEEEEeC
Q psy10953         21 PDDKYVL-SGSQSGKINLYGVETG----KLEQIFD------TRG-KFTLSIAYSTDGHWIASGALD------GIINIFDA   82 (181)
Q Consensus        21 ~~g~~l~-~~~~d~~i~~~d~~~~----~~~~~~~------~~~-~~~~~~~~s~d~~~l~~~~~d------~~v~i~d~   82 (181)
                      +++++|+ .+..+.+|.++|+.+.    ++...+.      ..+ .....+..+|+| .+++...+      +.+.++|.
T Consensus        93 ~~r~~l~v~~l~s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~~g~~~g~v~vlD~  171 (462)
T 2ece_A           93 IERRFLIVPGLRSSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNEEGEGPGGILMLDH  171 (462)
T ss_dssp             CCSCEEEEEBTTTCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEETTSCSCCEEEEECT
T ss_pred             ccCCEEEEccCCCCeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCcCCCCCCeEEEEEC
Confidence            7888876 4556789999999766    5555552      111 123356778999 66665544      78999998


Q ss_pred             CCCCc-----------ccEEEEEEcCCCCEEEEEe-------------------CCCcEEEEecCCCceeeeeecC---C
Q psy10953         83 NTGHS-----------SWVLSTAFTRDGKFFISAS-------------------ADHTVRVWNFARRENMHTFKHA---D  129 (181)
Q Consensus        83 ~~~~~-----------~~v~~~~~s~~~~~l~~~~-------------------~d~~i~v~d~~~~~~~~~~~~~---~  129 (181)
                      .+...           ..-..+.|+|+++.++++.                   .+..|.+||+.+++...++...   .
T Consensus       172 ~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~~~tI~vg~~g~  251 (462)
T 2ece_A          172 YSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKRIHSLTLGEENR  251 (462)
T ss_dssp             TTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEEEEEEESCTTEE
T ss_pred             CCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcEeeEEecCCCCC
Confidence            75431           1234578899999888885                   3689999999988777777643   2


Q ss_pred             cEEEEEE--ccCCCEEEEEcC------CCcEEEEeCCCC
Q psy10953        130 QVWCVCV--APDGDKFVSVGE------DKAVHMYSYKPE  160 (181)
Q Consensus       130 ~v~~~~~--sp~g~~l~~~~~------d~~v~i~~~~~~  160 (181)
                      ....++|  +|+++++++++.      ++.|.+|....+
T Consensus       252 ~P~~i~f~~~Pdg~~aYV~~e~~~~~Lss~V~v~~~d~g  290 (462)
T 2ece_A          252 MALELRPLHDPTKLMGFINMVVSLKDLSSSIWLWFYEDG  290 (462)
T ss_dssp             EEEEEEECSSTTCCEEEEEEEEETTTCCEEEEEEEEETT
T ss_pred             ccceeEeeECCCCCEEEEEEeeeccCCCceEEEEEecCC
Confidence            4556666  999999877764      568877776543

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.70  E-value=2.3e-06  Score=64.16  Aligned_cols=145  Identities=12%  Similarity=0.147  Sum_probs=97.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-------------------CceEEEEEECC-CCCEEEEeeC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-------------------GKFTLSIAYST-DGHWIASGAL   73 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-------------------~~~~~~~~~s~-d~~~l~~~~~   73 (181)
                      ..+++++++|++++++..++.|..|+..+++........                   ......+++++ +++ |+.+..
T Consensus        21 p~~i~~d~~g~~l~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~p~gi~~~~~~g~-l~v~d~   99 (322)
T 2fp8_A           21 PNSFTFDSTNKGFYTSVQDGRVIKYEGPNSGFVDFAYASPYWNKAFCENSTDAEKRPLCGRTYDISYNLQNNQ-LYIVDC   99 (322)
T ss_dssp             CCCEECCTTCSSEEEECTTSEEEEECCTTTCEEEEEESCTTCCHHHHTTCCCGGGHHHHCCEEEEEEETTTTE-EEEEET
T ss_pred             ceEEEEcCCCCEEEEEcCCCeEEEECCCCCceEEEecccccccccccccccchhccccCCCCceEEEcCCCCc-EEEEEC
Confidence            467889999998888888999999998876654332110                   01346788997 665 444544


Q ss_pred             CCcEEEEeCCCCC------------cccEEEEEEcC-CCCEEEEEeC-----------------CCcEEEEecCCCceee
Q psy10953         74 DGIINIFDANTGH------------SSWVLSTAFTR-DGKFFISASA-----------------DHTVRVWNFARRENMH  123 (181)
Q Consensus        74 d~~v~i~d~~~~~------------~~~v~~~~~s~-~~~~l~~~~~-----------------d~~i~v~d~~~~~~~~  123 (181)
                      .+.+..+|..++.            ......+++++ +|+++++-..                 ++.+..||..+++...
T Consensus       100 ~~~i~~~d~~~g~~~~~~~~~~~~~~~~p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~  179 (322)
T 2fp8_A          100 YYHLSVVGSEGGHATQLATSVDGVPFKWLYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTL  179 (322)
T ss_dssp             TTEEEEECTTCEECEEEESEETTEECSCEEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEE
T ss_pred             CCCEEEEeCCCCEEEEecccCCCCcccccceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEE
Confidence            4557788875431            12467899999 9997776532                 3678888887665332


Q ss_pred             eeecCCcEEEEEEccCCCEEEEE-cCCCcEEEEeCCC
Q psy10953        124 TFKHADQVWCVCVAPDGDKFVSV-GEDKAVHMYSYKP  159 (181)
Q Consensus       124 ~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~i~~~~~  159 (181)
                      ........+.++++|+|+.++.+ ..++.|..|++..
T Consensus       180 ~~~~~~~p~gia~~~dg~~lyv~d~~~~~I~~~~~~~  216 (322)
T 2fp8_A          180 LLKELHVPGGAEVSADSSFVLVAEFLSHQIVKYWLEG  216 (322)
T ss_dssp             EEEEESCCCEEEECTTSSEEEEEEGGGTEEEEEESSS
T ss_pred             eccCCccCcceEECCCCCEEEEEeCCCCeEEEEECCC
Confidence            22222345679999999966555 5568999999864

>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A

Probab=98.69  E-value=1.7e-06  Score=63.21  Aligned_cols=131  Identities=8%  Similarity=0.117  Sum_probs=94.4

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc-----
Q psy10953         14 MWNVVFSPDDKYVLSG-SQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS-----   87 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~-----   87 (181)
                      .+...+.++++.|+.. ..++.+.+||.++.+.+..+...+.   .+.+++|++.|+....++.+.++|..+...     
T Consensus        87 ~FgeGit~~g~~ly~ltw~~~~v~v~D~~t~~~~~ti~~~~e---G~glt~dg~~L~~SdGs~~i~~iDp~T~~v~~~I~  163 (262)
T 3nol_A           87 YFGEGISDWKDKIVGLTWKNGLGFVWNIRNLRQVRSFNYDGE---GWGLTHNDQYLIMSDGTPVLRFLDPESLTPVRTIT  163 (262)
T ss_dssp             CCEEEEEEETTEEEEEESSSSEEEEEETTTCCEEEEEECSSC---CCCEEECSSCEEECCSSSEEEEECTTTCSEEEEEE
T ss_pred             cceeEEEEeCCEEEEEEeeCCEEEEEECccCcEEEEEECCCC---ceEEecCCCEEEEECCCCeEEEEcCCCCeEEEEEE
Confidence            3444455566666544 4588999999999999988876443   233445788888777788899999876421     


Q ss_pred             --------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-------------CcEEEEEEccCCCEEEEE
Q psy10953         88 --------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA-------------DQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        88 --------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-------------~~v~~~~~sp~g~~l~~~  146 (181)
                              ..++.+.|. +|+.++....+..|.+.|.++++.+..+...             +..+++|++|+++.|+..
T Consensus       164 V~~~g~~~~~lNELe~~-~G~lyan~w~~~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp~~~~lfVT  242 (262)
T 3nol_A          164 VTAHGEELPELNELEWV-DGEIFANVWQTNKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDKEHHRLFVT  242 (262)
T ss_dssp             CEETTEECCCEEEEEEE-TTEEEEEETTSSEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEETTTTEEEEE
T ss_pred             eccCCccccccceeEEE-CCEEEEEEccCCeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcCCCCEEEEE
Confidence                    123446665 7888877778889999999999887766421             346899999998887766


Q ss_pred             cC
Q psy10953        147 GE  148 (181)
Q Consensus       147 ~~  148 (181)
                      +.
T Consensus       243 GK  244 (262)
T 3nol_A          243 GK  244 (262)
T ss_dssp             ET
T ss_pred             CC
Confidence            64

>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}

Probab=98.62  E-value=2.4e-06  Score=62.51  Aligned_cols=129  Identities=8%  Similarity=0.052  Sum_probs=91.9

Q ss_pred             EEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc------
Q psy10953         15 WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS------   87 (181)
Q Consensus        15 ~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~------   87 (181)
                      +...+.++++.|+ +...++.+.+||.++.+.+..+...+.   .+.+.+|++.|+....++.++++|..+...      
T Consensus        97 FgeGit~~g~~Ly~ltw~~~~v~V~D~~Tl~~~~ti~~~~e---GwGLt~Dg~~L~vSdGs~~l~~iDp~T~~v~~~I~V  173 (268)
T 3nok_A           97 FAEGLASDGERLYQLTWTEGLLFTWSGMPPQRERTTRYSGE---GWGLCYWNGKLVRSDGGTMLTFHEPDGFALVGAVQV  173 (268)
T ss_dssp             CEEEEEECSSCEEEEESSSCEEEEEETTTTEEEEEEECSSC---CCCEEEETTEEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEeCCEEEEEEccCCEEEEEECCcCcEEEEEeCCCc---eeEEecCCCEEEEECCCCEEEEEcCCCCeEEEEEEe
Confidence            4433444555554 455688999999999999988876443   233345788888887889999999876431      


Q ss_pred             -------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC--------------CcEEEEEEccCCCEEEEE
Q psy10953         88 -------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA--------------DQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        88 -------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~--------------~~v~~~~~sp~g~~l~~~  146 (181)
                             ..++.+.|. +|+.++....+..|.+.|.++++.+..+...              +..+++|++|+++.|+..
T Consensus       174 ~~~g~~v~~lNeLe~~-dG~lyanvw~s~~I~vIDp~TG~V~~~Idl~~L~~~~~~~~~~~~~vlNGIA~dp~~~rlfVT  252 (268)
T 3nok_A          174 KLRGQPVELINELECA-NGVIYANIWHSSDVLEIDPATGTVVGVIDASALTRAVAGQVTNPEAVLNGIAVEPGSGRIFMT  252 (268)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTCSEEEEECTTTCBEEEEEECHHHHHHHTTTCCCTTCCEEEEEECTTTCCEEEE
T ss_pred             CCCCcccccccccEEe-CCEEEEEECCCCeEEEEeCCCCcEEEEEECCCCcccccccccCcCCceEEEEEcCCCCEEEEe
Confidence                   123455555 7887777777889999999999877766421              357899999987666555


Q ss_pred             c
Q psy10953        147 G  147 (181)
Q Consensus       147 ~  147 (181)
                      +
T Consensus       253 G  253 (268)
T 3nok_A          253 G  253 (268)
T ss_dssp             E
T ss_pred             C
Confidence            5

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=98.56  E-value=2.8e-05  Score=58.69  Aligned_cols=148  Identities=11%  Similarity=0.186  Sum_probs=104.2

Q ss_pred             eeeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCcEEEEEecC-------CceEEEEEE---CCCCCEEEEee-------
Q psy10953         11 PVDMWNVVFSPDDKYVLSGS-QSGKINLYGVETGKLEQIFDTR-------GKFTLSIAY---STDGHWIASGA-------   72 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-------~~~~~~~~~---s~d~~~l~~~~-------   72 (181)
                      ....-+++|++....++.++ ..++|..||...+.........       ......+.+   .|+++++++..       
T Consensus        12 ~~yPE~~~wd~~~g~~~vs~l~~g~V~~~~~~~~~~~~~~~~~~s~~g~~~~~~sGl~~~~~D~~grL~vv~~~~~af~~   91 (334)
T 2p9w_A           12 NLTPEDTIYDRTRQVFYQSNLYKGRIEVYNPKTQSHFNVVIDGASSNGDGEQQMSGLSLLTHDNSKRLFAVMKNAKSFNF   91 (334)
T ss_dssp             TCCCSCEEEETTTTEEEEEETTTTEEEEECTTTCCEEEECCTTTCCSSCCSEEEEEEEESSSSSCCEEEEEEEETTTTCT
T ss_pred             ccCCcCccCcCCCCEEEEEeccCCEEEEEcCCCCeEEEEecCCccccCCCcceeeEEEEeccCCCCcEEEEEcccccccc
Confidence            33345688988666666666 7899999998766554442211       113468999   68888777644       


Q ss_pred             ------CCCcEEEEeCC---CCCc---------------------ccEEEEEEcCCCCEEEEEeCC-CcEEEEecCCCce
Q psy10953         73 ------LDGIINIFDAN---TGHS---------------------SWVLSTAFTRDGKFFISASAD-HTVRVWNFARREN  121 (181)
Q Consensus        73 ------~d~~v~i~d~~---~~~~---------------------~~v~~~~~s~~~~~l~~~~~d-~~i~v~d~~~~~~  121 (181)
                            .+..+..||+.   ++..                     .....++.+++|+..++.+.. +.|..++..... 
T Consensus        92 ~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDvavD~~GnaYVt~s~~~~~I~rV~pdG~~-  170 (334)
T 2p9w_A           92 ADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSAQDRDGNSYVAFALGMPAIARVSADGKT-  170 (334)
T ss_dssp             TSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEEECTTSCEEEEEEESSCEEEEECTTSCC-
T ss_pred             cccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeEECCCCCEEEeCCCCCCeEEEEeCCCCE-
Confidence                  26789999988   4421                     136789999999999988887 888888776542 


Q ss_pred             eeeee--c-----CCcEEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        122 MHTFK--H-----ADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       122 ~~~~~--~-----~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +..+.  .     ....++++++|+|+.|++....+.+..+|+..
T Consensus       171 ~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~  215 (334)
T 2p9w_A          171 VSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSK  215 (334)
T ss_dssp             EEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSS
T ss_pred             EeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCC
Confidence            22221  1     11266999999999988887799999999874

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=98.54  E-value=2.8e-06  Score=71.12  Aligned_cols=143  Identities=10%  Similarity=0.027  Sum_probs=87.7

Q ss_pred             eEEEEEEc-CCCCEEEEEeC-C----CcEEEEeCCCC-cEEE-EEecCCceEEEEEECCCCCEEEEeeCC-----CcEEE
Q psy10953         13 DMWNVVFS-PDDKYVLSGSQ-S----GKINLYGVETG-KLEQ-IFDTRGKFTLSIAYSTDGHWIASGALD-----GIINI   79 (181)
Q Consensus        13 ~~~~~~~s-~~g~~l~~~~~-d----~~i~~~d~~~~-~~~~-~~~~~~~~~~~~~~s~d~~~l~~~~~d-----~~v~i   79 (181)
                      .+...+|| |||++||.+.. +    .+|+++|+.++ +.+. .+.   .....+.|+|||+.|+....+     ..|++
T Consensus       175 ~~~~~~~S~PDG~~lAy~~~~~G~~~~~l~v~dl~~g~~~l~~~~~---~~~~~~~WspDg~~l~y~~~d~~~~~~~v~~  251 (751)
T 2xe4_A          175 DVMEVKPAPPEHDLVAFSVDMSGNEVYTIEFKRISDPSQTIADKVS---GTNGEIVWGPDHTSLFYVTKDETLRENKVWR  251 (751)
T ss_dssp             EEEEEEECTTTTCEEEEEEESSSSSCEEEEEEETTCTTCCCCCCEE---EECSCCEECSSTTEEEEEEECTTCCEEEEEE
T ss_pred             EEeeeEecCCCCCEEEEEEeCCCCceEEEEEEECCCCCEeCCcccc---CceeeEEEecCCCEEEEEEECCCCCCCEEEE
Confidence            45778999 99999885543 2    25999999988 6321 111   112257899999988887665     35777


Q ss_pred             EeCCCCC-----------cccEEEEEEcCCCCEEEEEeC---CCcEEEEecCCCc-ee--eee-e-cCCcEEEEEEccCC
Q psy10953         80 FDANTGH-----------SSWVLSTAFTRDGKFFISASA---DHTVRVWNFARRE-NM--HTF-K-HADQVWCVCVAPDG  140 (181)
Q Consensus        80 ~d~~~~~-----------~~~v~~~~~s~~~~~l~~~~~---d~~i~v~d~~~~~-~~--~~~-~-~~~~v~~~~~sp~g  140 (181)
                      +++.++.           ......+.|+|||++|+..+.   ...|+++|+.++. ..  ..+ . .....+.+.++. |
T Consensus       252 ~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~~~~~~~~~~~l~~~~~~~~~s~~~~~-g  330 (751)
T 2xe4_A          252 HVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLRKGNAHNTLEIVRPREKGVRYDVQMHG-T  330 (751)
T ss_dssp             EETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESSSCTTCCCEEESSCCCTTCCEEEEEET-T
T ss_pred             EECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECCCCCCCceeEEeecCCCCceEEEeeee-C
Confidence            8875432           123456789999998776552   3458888987652 12  222 2 233445555443 5


Q ss_pred             CEE-EEEcCC----CcEEEEeCCC
Q psy10953        141 DKF-VSVGED----KAVHMYSYKP  159 (181)
Q Consensus       141 ~~l-~~~~~d----~~v~i~~~~~  159 (181)
                      +.| +....+    ..|..+++..
T Consensus       331 ~~l~~~t~~~~a~~~~L~~~d~~~  354 (751)
T 2xe4_A          331 SHLVILTNEGGAVNHKLLIAPRGQ  354 (751)
T ss_dssp             TEEEEEECTTTCTTCEEEEEETTS
T ss_pred             CEEEEEeCCCCCCCcEEEEEcCCC
Confidence            544 444333    2566666653

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=98.50  E-value=6.6e-06  Score=68.04  Aligned_cols=149  Identities=15%  Similarity=0.252  Sum_probs=105.1

Q ss_pred             EEEEcCCCCEEEEEeCCC-------------------cEEEEeCCCCcEEEEEecCC---------ceEEEEEECCCCC-
Q psy10953         16 NVVFSPDDKYVLSGSQSG-------------------KINLYGVETGKLEQIFDTRG---------KFTLSIAYSTDGH-   66 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~-------------------~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~s~d~~-   66 (181)
                      .++++|++.+++.+..++                   .|..+|.++|+.+-.++...         .......+..+|+ 
T Consensus       234 ~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~AlD~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~  313 (668)
T 1kv9_A          234 SMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAIRPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKP  313 (668)
T ss_dssp             CEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEECTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEE
T ss_pred             ceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEEcCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcE
Confidence            367888888888887665                   39999999999887666421         1111223334665 


Q ss_pred             --EEEEeeCCCcEEEEeCCCCCcc---------cEE-----------------------------------EEEEcCCCC
Q psy10953         67 --WIASGALDGIINIFDANTGHSS---------WVL-----------------------------------STAFTRDGK  100 (181)
Q Consensus        67 --~l~~~~~d~~v~i~d~~~~~~~---------~v~-----------------------------------~~~~s~~~~  100 (181)
                        .++.++.+|.++++|..+++..         +..                                   .++++|+..
T Consensus       314 ~~~v~~~~~~G~l~~lD~~tG~~l~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~p~~~G~~~w~~~a~dp~~g  393 (668)
T 1kv9_A          314 RKVLMQAPKNGFFYVLDRTNGKLISAEKFGKVTWAEKVDLATGRPVEAPGVRYEKEPIVMWPSPFGAHNWHSMSFNPGTG  393 (668)
T ss_dssp             EEEEEECCTTSEEEEEETTTCCEEEEEESSCCCSEEEECTTTCCEEECTTTTCSSSCEEESSCTTCSSCSSCCEEETTTT
T ss_pred             EEEEEEECCCCEEEEEECCCCCEeccccccccccccccccccCCccccccccccCCeeEECCCCccccCCCcceECCCCC
Confidence              6888999999999998776522         111                                   146777655


Q ss_pred             EEEEE------------------------------------eCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE
Q psy10953        101 FFISA------------------------------------SADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus       101 ~l~~~------------------------------------~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                      .+...                                    ..++.|+-||+.+++...........+...+...+..++
T Consensus       394 ~~yv~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~p~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~~~~~t~gg~vf  473 (668)
T 1kv9_A          394 LVYIPYQEVPGVYRNEGKDFVTRKAFNTAAGFADATDVPAAVVSGALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVF  473 (668)
T ss_dssp             EEEEEEEECCEEECCCGGGCCCCSSCCCSSCGGGCCCCCGGGCEEEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEE
T ss_pred             EEEEeccccceEeeeeccccccccccccCccccccCCCCCCCccceEEEEeCCCCcEEEEccCCCCCcCceeEeCCCEEE
Confidence            44331                                    123779999999999888877655555555566788888


Q ss_pred             EEcCCCcEEEEeCCCCeeEE
Q psy10953        145 SVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .++.|+.++.||..+++.+-
T Consensus       474 ~g~~dg~l~a~d~~tG~~l~  493 (668)
T 1kv9_A          474 QGTAAGQMHAYSADKGEALW  493 (668)
T ss_dssp             EECTTSEEEEEETTTCCEEE
T ss_pred             EECCcccchhhhhhcChhhe
Confidence            89999999999999887763

>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}

Probab=98.46  E-value=1.4e-05  Score=57.85  Aligned_cols=130  Identities=10%  Similarity=0.105  Sum_probs=91.3

Q ss_pred             EEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc------
Q psy10953         15 WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS------   87 (181)
Q Consensus        15 ~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~------   87 (181)
                      +...+.++++.|+ ..-.++.+.+||.++.+.+..+...+.. ..+  .+|++.|+.+..++.++++|..+...      
T Consensus        66 fgeGi~~~~~~ly~ltw~~~~v~v~D~~tl~~~~ti~~~~~G-wgl--t~dg~~L~vSdgs~~l~~iDp~t~~~~~~I~V  142 (243)
T 3mbr_X           66 FGAGIVAWRDRLIQLTWRNHEGFVYDLATLTPRARFRYPGEG-WAL--TSDDSHLYMSDGTAVIRKLDPDTLQQVGSIKV  142 (243)
T ss_dssp             CEEEEEEETTEEEEEESSSSEEEEEETTTTEEEEEEECSSCC-CEE--EECSSCEEEECSSSEEEEECTTTCCEEEEEEC
T ss_pred             ceeEEEEeCCEEEEEEeeCCEEEEEECCcCcEEEEEeCCCCc-eEE--eeCCCEEEEECCCCeEEEEeCCCCeEEEEEEE
Confidence            3444444555554 4556889999999999999888765432 234  45777777777788999999876432      


Q ss_pred             -------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec--------------CCcEEEEEEccCCCEEEEE
Q psy10953         88 -------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH--------------ADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus        88 -------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~--------------~~~v~~~~~sp~g~~l~~~  146 (181)
                             ..++.+.+. +|+.++....+..|.+.|.++++.+..+..              .+..+++|++|+++.|+..
T Consensus       143 ~~~g~~~~~lNeLe~~-~G~lyanvw~s~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~~~~~lfVT  221 (243)
T 3mbr_X          143 TAGGRPLDNLNELEWV-NGELLANVWLTSRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDAEHDRLFVT  221 (243)
T ss_dssp             EETTEECCCEEEEEEE-TTEEEEEETTTTEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEETTTTEEEEE
T ss_pred             ccCCcccccceeeEEe-CCEEEEEECCCCeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcCCCCEEEEE
Confidence                   123344443 778777777788999999999987776641              1246899999988776666


Q ss_pred             cC
Q psy10953        147 GE  148 (181)
Q Consensus       147 ~~  148 (181)
                      +.
T Consensus       222 GK  223 (243)
T 3mbr_X          222 GK  223 (243)
T ss_dssp             ET
T ss_pred             CC
Confidence            63

>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*

Probab=98.44  E-value=3.4e-05  Score=57.74  Aligned_cols=145  Identities=12%  Similarity=0.139  Sum_probs=92.6

Q ss_pred             EEEEEEcC-CCCEEEEEeC-----------------CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCC
Q psy10953         14 MWNVVFSP-DDKYVLSGSQ-----------------SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALD   74 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~~~~-----------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d   74 (181)
                      ..++++.+ +|++.++-..                 ++.|..+|..+++......... ....++++++|+.|+.+ ..+
T Consensus       128 p~~i~~d~~~G~l~v~d~~~~~~~~~~~~~~~~~~~~g~v~~~d~~~~~~~~~~~~~~-~p~gia~~~dg~~lyv~d~~~  206 (322)
T 2fp8_A          128 LYAVTVDQRTGIVYFTDVSTLYDDRGVQQIMDTSDKTGRLIKYDPSTKETTLLLKELH-VPGGAEVSADSSFVLVAEFLS  206 (322)
T ss_dssp             EEEEEECTTTCCEEEEESCSSCCTTCHHHHHHHTCCCEEEEEEETTTTEEEEEEEEES-CCCEEEECTTSSEEEEEEGGG
T ss_pred             cceEEEecCCCEEEEECCcccccccccceehcccCCCceEEEEeCCCCEEEEeccCCc-cCcceEECCCCCEEEEEeCCC
Confidence            56799999 8986665432                 3678888887776544332212 22478999999866655 556


Q ss_pred             CcEEEEeCCCCC----------cccEEEEEEcCCCCEEEEEeC----------CCcEEEEecCCCceeeeeecC-----C
Q psy10953         75 GIINIFDANTGH----------SSWVLSTAFTRDGKFFISASA----------DHTVRVWNFARRENMHTFKHA-----D  129 (181)
Q Consensus        75 ~~v~i~d~~~~~----------~~~v~~~~~s~~~~~l~~~~~----------d~~i~v~d~~~~~~~~~~~~~-----~  129 (181)
                      +.|..|++....          .. ...++++++|+++++...          .+.|..+|.. ++.+..+..+     .
T Consensus       207 ~~I~~~~~~~~~~~~~~~~~~~~g-P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~-G~~~~~~~~~~g~~~~  284 (322)
T 2fp8_A          207 HQIVKYWLEGPKKGTAEVLVKIPN-PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEF-GNILEVIPLPPPFAGE  284 (322)
T ss_dssp             TEEEEEESSSTTTTCEEEEEECSS-EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTT-SCEEEEEECCTTTTTS
T ss_pred             CeEEEEECCCCcCCccceEEeCCC-CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCC-CCEEEEEECCCCCccc
Confidence            889999886421          11 567889999997776654          4568888864 5555555422     2


Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                      .+.++++ .+++.+++...++.|..+++....+
T Consensus       285 ~~~~~~~-~~g~L~v~~~~~~~i~~~~~~~~~~  316 (322)
T 2fp8_A          285 HFEQIQE-HDGLLYIGTLFHGSVGILVYDKKGN  316 (322)
T ss_dssp             CCCEEEE-ETTEEEEECSSCSEEEEEEC-----
T ss_pred             cceEEEE-eCCEEEEeecCCCceEEEecccccC
Confidence            4556665 4665555555678999998865443

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.42  E-value=2.5e-05  Score=61.30  Aligned_cols=144  Identities=11%  Similarity=0.169  Sum_probs=92.4

Q ss_pred             EEEEEEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC---C-cEEEEeCCCCCc
Q psy10953         14 MWNVVFSPD--DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD---G-IINIFDANTGHS   87 (181)
Q Consensus        14 ~~~~~~s~~--g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d---~-~v~i~d~~~~~~   87 (181)
                      ...++|+|+  +..|+.+...+.|+.+|..+++...... .......++++++|+++++-...   . .+...+...+..
T Consensus       141 P~gvavd~~s~~g~Lyv~D~~~~I~~id~~~g~v~~~~~-~~~~P~giavd~dG~lyVad~~~~~~~~gv~~~~~~~~~~  219 (433)
T 4hw6_A          141 IWRMMFDPNSNYDDLYWVGQRDAFRHVDFVNQYVDIKTT-NIGQCADVNFTLNGDMVVVDDQSSDTNTGIYLFTRASGFT  219 (433)
T ss_dssp             CCEEEECTTTTTCEEEEECBTSCEEEEETTTTEEEEECC-CCSCEEEEEECTTCCEEEEECCSCTTSEEEEEECGGGTTC
T ss_pred             CceEEEccccCCCEEEEEeCCCCEEEEECCCCEEEEeec-CCCCccEEEECCCCCEEEEcCCCCcccceEEEEECCCCee
Confidence            468999984  4555555444899999998888766544 33335689999999944443211   1 233333322211


Q ss_pred             --------ccEEEEEEcC-CCCEEEEEeCCCcEEEEecCCCceeeee-e--cCCcEEEEEEccCCCEEEE-EcCCCcEEE
Q psy10953         88 --------SWVLSTAFTR-DGKFFISASADHTVRVWNFARRENMHTF-K--HADQVWCVCVAPDGDKFVS-VGEDKAVHM  154 (181)
Q Consensus        88 --------~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~~~~~~~~~-~--~~~~v~~~~~sp~g~~l~~-~~~d~~v~i  154 (181)
                              .....++++| +|.++++-..++.|+.+|..++.....+ .  .......++++|+|++|+. -...+.|+.
T Consensus       220 ~~~~~~~~~~P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~  299 (433)
T 4hw6_A          220 ERLSLCNARGAKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYR  299 (433)
T ss_dssp             CEEEEEECSSBCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEE
T ss_pred             ccccccccCCCCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEE
Confidence                    2234578899 7887777777889999998766542222 2  1222346999999995544 445678999


Q ss_pred             EeCC
Q psy10953        155 YSYK  158 (181)
Q Consensus       155 ~~~~  158 (181)
                      +++.
T Consensus       300 ~~~d  303 (433)
T 4hw6_A          300 VDYN  303 (433)
T ss_dssp             EEBC
T ss_pred             EeCC
Confidence            8865

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.41  E-value=0.0002  Score=54.50  Aligned_cols=151  Identities=9%  Similarity=0.017  Sum_probs=96.5

Q ss_pred             eeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCC---
Q psy10953         12 VDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI-ASGALDGIINIFDANTGH---   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~~~~~---   86 (181)
                      .....++|++.++.|+ +-...+.|..++..++.....+.........+++++.+..| ++-...+.|.+.++....   
T Consensus        73 ~~~~~l~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~  152 (349)
T 3v64_C           73 ENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKV  152 (349)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEE
T ss_pred             CceEEEEEeccccEEEEEeccCCceEEEecCCCCceEEEeCCCCCccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEE
Confidence            3457889997666554 44567889999988766554443322223478888765555 444556788888876432   


Q ss_pred             -----cccEEEEEEcCCCC-EEEEEeCC-CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcEEEEeC
Q psy10953         87 -----SSWVLSTAFTRDGK-FFISASAD-HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAVHMYSY  157 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~-~l~~~~~d-~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~  157 (181)
                           ......++++|.+. ++++-... +.|..+++.......... .-...++++++|+++.|+.+. ..+.|..+++
T Consensus       153 l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~  232 (349)
T 3v64_C          153 LLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANL  232 (349)
T ss_dssp             EECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEESCCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeC
Confidence                 23567899998654 45554444 788888876543222222 234578999998776665554 5678999998


Q ss_pred             CCCee
Q psy10953        158 KPEEE  162 (181)
Q Consensus       158 ~~~~~  162 (181)
                      .....
T Consensus       233 dG~~~  237 (349)
T 3v64_C          233 DGSHR  237 (349)
T ss_dssp             TSCSC
T ss_pred             CCCce
Confidence            65433

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=98.37  E-value=0.00016  Score=55.88  Aligned_cols=154  Identities=8%  Similarity=-0.001  Sum_probs=96.6

Q ss_pred             CeeeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCC-
Q psy10953         10 GPVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDANTGH-   86 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~-   86 (181)
                      .......++|++.++.| ++-...+.|..++..++.....+.........+++++.+..|+ +-...+.|.+.++.... 
T Consensus       114 ~~~~~~gl~~d~~~~~ly~~D~~~~~I~r~~~~g~~~~~~~~~~~~~p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~  193 (386)
T 3v65_B          114 NLENAIALDFHHRRELVFWSDVTLDRILRANLNGSNVEEVVSTGLESPGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHR  193 (386)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCEEEEECSSCSCCCCEEEETTTTEEEEEETTTTEEEECBTTSCSC
T ss_pred             CCCccEEEEEecCCCeEEEEeCCCCcEEEEecCCCCcEEEEeCCCCCccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCce
Confidence            33446789999765555 4555678899999887765554433222234678887655554 44556778888775432 


Q ss_pred             -------cccEEEEEEcCCCCE-EEEEeCC-CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcEEEE
Q psy10953         87 -------SSWVLSTAFTRDGKF-FISASAD-HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAVHMY  155 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~~-l~~~~~d-~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~  155 (181)
                             ......++++|.+.. +++-... +.|+.+++.......... .-...+.++++|+++.|+.+. ..+.|..+
T Consensus       194 ~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~  273 (386)
T 3v65_B          194 KVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRIIADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERA  273 (386)
T ss_dssp             EEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEE
T ss_pred             EEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEEEECCCCCeeeEEEeCCCCEEEEEECCCCEEEEE
Confidence                   235688999986654 4444444 678888876543222222 233578999998776665544 56789999


Q ss_pred             eCCCCeeE
Q psy10953        156 SYKPEEEV  163 (181)
Q Consensus       156 ~~~~~~~~  163 (181)
                      ++....+.
T Consensus       274 d~dG~~~~  281 (386)
T 3v65_B          274 NLDGSHRK  281 (386)
T ss_dssp             CTTSCSCE
T ss_pred             eCCCCeeE
Confidence            88654433

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=98.37  E-value=4.9e-05  Score=60.58  Aligned_cols=146  Identities=12%  Similarity=0.192  Sum_probs=94.9

Q ss_pred             eEEEEEEcC-CCCEEEEEeC-CCcEEEEeCCCCcEEEEEecCC---ceEEEEEE-------CCCCCEEEEeeCCC-----
Q psy10953         13 DMWNVVFSP-DDKYVLSGSQ-SGKINLYGVETGKLEQIFDTRG---KFTLSIAY-------STDGHWIASGALDG-----   75 (181)
Q Consensus        13 ~~~~~~~s~-~g~~l~~~~~-d~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~-------s~d~~~l~~~~~d~-----   75 (181)
                      ....|+|+| ++..|+.+.. .+.|++.|.+++++..+.....   .....++|       +++|++|+.+...+     
T Consensus       140 ~p~~la~dp~~~~~Lyv~~~~~~~i~~ID~~~~~v~~l~~~~~~~~~~p~~ia~~~~~~~~d~~G~~lyvad~~~~~~~~  219 (496)
T 3kya_A          140 DNGRLAFDPLNKDHLYICYDGHKAIQLIDLKNRMLSSPLNINTIPTNRIRSIAFNKKIEGYADEAEYMIVAIDYDGKGDE  219 (496)
T ss_dssp             SEEEEEEETTEEEEEEEEEETEEEEEEEETTTTEEEEEECCTTSSCSBEEEEEECCCBTTTBCTTCEEEEEECCCTTGGG
T ss_pred             CCCEEEEccCCCCEEEEEECCCCeEEEEECCCCEEEEEEccCccccCCCcEEEEeecccccCCCCCEEEEEeCCCCCccc
Confidence            357899999 4555554443 4679999999888877654321   12468999       99999666665443     


Q ss_pred             --cEEEEeCCC--CCc-----------ccEEEEEEcC-CCCEEEEEeCCCcEEEEecC-------CCce-----------
Q psy10953         76 --IINIFDANT--GHS-----------SWVLSTAFTR-DGKFFISASADHTVRVWNFA-------RREN-----------  121 (181)
Q Consensus        76 --~v~i~d~~~--~~~-----------~~v~~~~~s~-~~~~l~~~~~d~~i~v~d~~-------~~~~-----------  121 (181)
                        .+.+++...  ...           .....++++| ++.++++-..++.|+.+|+.       ++..           
T Consensus       220 ~~~V~~i~r~~~G~~~~~~~~~~v~~~~~p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~  299 (496)
T 3kya_A          220 SPSVYIIKRNADGTFDDRSDIQLIAAYKQCNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNT  299 (496)
T ss_dssp             EEEEEEEECCTTSCCSTTSCEEEEEEESCCCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTT
T ss_pred             CceEEEEecCCCCceeecccceeeccCCCceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccc
Confidence              366776433  111           1124567889 45666677778889999987       4432           


Q ss_pred             ---eeeeecCCcEEEEEEccCCCEE-EEEcCCCcEEEEeCC
Q psy10953        122 ---MHTFKHADQVWCVCVAPDGDKF-VSVGEDKAVHMYSYK  158 (181)
Q Consensus       122 ---~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~i~~~~  158 (181)
                         +...........++|+|+|+.+ ++=...+.|+.++..
T Consensus       300 ~~~l~~~~~~~~p~~ia~~p~G~~lYvaD~~~h~I~kid~d  340 (496)
T 3kya_A          300 FKQLFTIADPSWEFQIFIHPTGKYAYFGVINNHYFMRSDYD  340 (496)
T ss_dssp             EEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEE
T ss_pred             cceeEecCCCCCceEEEEcCCCCEEEEEeCCCCEEEEEecC
Confidence               1111223446789999999964 444567789986654

>1mda_H Methylamine dehydrogenase (heavy subunit); electron transport; HET: TRQ; 2.50A {Paracoccus denitrificans} SCOP: b.69.2.1

Probab=98.35  E-value=4.4e-06  Score=64.32  Aligned_cols=130  Identities=8%  Similarity=-0.141  Sum_probs=84.8

Q ss_pred             CCCEEEEE-eCCC----cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEEEeCCCCC
Q psy10953         22 DDKYVLSG-SQSG----KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINIFDANTGH   86 (181)
Q Consensus        22 ~g~~l~~~-~~d~----~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i~d~~~~~   86 (181)
                      +..+++.. ..+.    +|.++|..+++.+..+......  .+.++||+++++.+.          .++.|.+||+.+..
T Consensus        30 ~~~~~yV~~~~~~~~~d~vsvID~~t~~v~~~i~vG~~P--~i~~spDg~~lyVan~~~~r~~~G~~~~~VsviD~~T~~  107 (368)
T 1mda_H           30 ISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFL  107 (368)
T ss_dssp             CTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCC
T ss_pred             CCCeEEEECCccCCccceEEEEECCCCeEEEEEeCCCCC--ceEECCCCCEEEEEcccccccccCCCCCEEEEEECCCCC
Confidence            43445443 3344    8889999999999888764443  699999999888775          36889999998653


Q ss_pred             cc---------------cEEEEEEcCCCCEEEEEeC--CCcEEE--EecCCCceeeeeecCCcEEEEEEccCCC-EEEEE
Q psy10953         87 SS---------------WVLSTAFTRDGKFFISASA--DHTVRV--WNFARRENMHTFKHADQVWCVCVAPDGD-KFVSV  146 (181)
Q Consensus        87 ~~---------------~v~~~~~s~~~~~l~~~~~--d~~i~v--~d~~~~~~~~~~~~~~~v~~~~~sp~g~-~l~~~  146 (181)
                      ..               ....++++|||++++.+..  +..+.+  +|..+   +..+...+.   ..+.|+|+ .+++.
T Consensus       108 vv~~I~v~~~~~~~~g~~P~~ia~SpDGk~lyVan~~~~~~v~V~~iD~~t---v~~i~v~~~---~~~~p~g~~~~~~~  181 (368)
T 1mda_H          108 PIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASD---DQLTKSASC---FHIHPGAAATHYLG  181 (368)
T ss_dssp             EEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEE---EEEEECSSC---CCCEEEETTEEECC
T ss_pred             EEEEEECCCccccccCCCcceEEEcCCCCEEEEEccCCCCeEEEEEEchhh---ceEEECCCc---eEEccCCCeEEEEE
Confidence            21               2346789999998887764  456888  88876   334433222   11234433 33444


Q ss_pred             cCCCcEEEEeCCC
Q psy10953        147 GEDKAVHMYSYKP  159 (181)
Q Consensus       147 ~~d~~v~i~~~~~  159 (181)
                      +.|+.+.+.++.+
T Consensus       182 ~~dg~~~~vd~~~  194 (368)
T 1mda_H          182 SCPASLAASDLAA  194 (368)
T ss_dssp             CCTTSCEEEECCS
T ss_pred             cCCCCEEEEECcc
Confidence            4556655566554

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.34  E-value=0.00033  Score=52.06  Aligned_cols=144  Identities=13%  Similarity=0.156  Sum_probs=90.3

Q ss_pred             eEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSG--KINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~--~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      ....++++++|+++++.....  .|..+|..++++...... .......++..+++..+++-..++.++.+|...+    
T Consensus        73 ~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v  152 (306)
T 2p4o_A           73 KVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSI  152 (306)
T ss_dssp             EEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             CceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEEEeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeE
Confidence            467899999999666554332  477778788887654432 2233345555555554454445788888887532    


Q ss_pred             --------------CcccEEEEEEcCCCCE-EEEEeCCCcEEEEecCC-Cce--eeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953         86 --------------HSSWVLSTAFTRDGKF-FISASADHTVRVWNFAR-REN--MHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        86 --------------~~~~v~~~~~s~~~~~-l~~~~~d~~i~v~d~~~-~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                                    .......+  +|+++. +++-...+.|+.|++.. +..  ...+........++++++|+.+++..
T Consensus       153 ~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~~~I~~~~~~~~g~~~~~~~~~~~~~P~gi~vd~dG~l~va~~  230 (306)
T 2p4o_A          153 WLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNLYGATH  230 (306)
T ss_dssp             EEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCEEEECB
T ss_pred             EEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCCCEEEEEEeCCCCCCCccEEEeccCCCCCeEECCCCCEEEEeC
Confidence                          01124445  788864 45555678899999864 221  11121123456789999998877766


Q ss_pred             CCCcEEEEeCC
Q psy10953        148 EDKAVHMYSYK  158 (181)
Q Consensus       148 ~d~~v~i~~~~  158 (181)
                      ..+.|.+++..
T Consensus       231 ~~~~V~~~~~~  241 (306)
T 2p4o_A          231 IYNSVVRIAPD  241 (306)
T ss_dssp             TTCCEEEECTT
T ss_pred             CCCeEEEECCC
Confidence            67889998865

>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1

Probab=98.33  E-value=6.4e-06  Score=68.25  Aligned_cols=126  Identities=17%  Similarity=0.204  Sum_probs=87.8

Q ss_pred             CCC---CEEEEEeCCCcEEEEeCCCCcEEEEEecCC-----------ceE------------------------EEEEEC
Q psy10953         21 PDD---KYVLSGSQSGKINLYGVETGKLEQIFDTRG-----------KFT------------------------LSIAYS   62 (181)
Q Consensus        21 ~~g---~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-----------~~~------------------------~~~~~s   62 (181)
                      .+|   ..++.++.+|.+.++|.++|+++..+....           ..+                        ..++++
T Consensus       322 ~dG~~~~~l~~~~~~G~l~~lD~~tG~~l~~~~~~~~~~~~~~d~~g~~~~~~~~~~~~~~~~~~P~~~G~~~w~~~a~d  401 (677)
T 1kb0_A          322 IAGKPRKVILHAPKNGFFFVLDRTNGKFISAKNFVPVNWASGYDKHGKPIGIAAARDGSKPQDAVPGPYGAHNWHPMSFN  401 (677)
T ss_dssp             ETTEEEEEEEECCTTSEEEEEETTTCCEEEEEESSCCSSEEEECTTSCEEECGGGGCTTSCEECSSCTTCSSCSSCCEEE
T ss_pred             cCCcEeeEEEEECCCCEEEEEECCCCCEeccccccccCcccccCCCCceeeccccCcCCCccEECcCcccccCCCCceEc
Confidence            367   678899999999999999999875543211           111                        146788


Q ss_pred             CCCCEEEEeeC-------------------------------------------CCcEEEEeCCCCCccc-------EEE
Q psy10953         63 TDGHWIASGAL-------------------------------------------DGIINIFDANTGHSSW-------VLS   92 (181)
Q Consensus        63 ~d~~~l~~~~~-------------------------------------------d~~v~i~d~~~~~~~~-------v~~   92 (181)
                      |++.++++...                                           .+.+..||+.+++..+       +..
T Consensus       402 p~~~~~yv~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~l~A~D~~tG~~~W~~~~~~~~~~  481 (677)
T 1kb0_A          402 PQTGLVYLPAQNVPVNLMDDKKWEFNQAGPGKPQSGTGWNTAKFFNAEPPKSKPFGRLLAWDPVAQKAAWSVEHVSPWNG  481 (677)
T ss_dssp             TTTTEEEEEEEECCCEEEECTTCCTTCCCTTSTTGGGTCCCCEEECSSCCCSCCEEEEEEEETTTTEEEEEEEESSSCCC
T ss_pred             CCCCEEEEeChhcceeeecccccccccccccccccccccccccccccccCCCCCccEEEEEeCCCCcEEeecCCCCCCcC
Confidence            98887776533                                           1678899998765322       222


Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcE--EEEEEccCCCEEEEE
Q psy10953         93 TAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQV--WCVCVAPDGDKFVSV  146 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v--~~~~~sp~g~~l~~~  146 (181)
                      ..+..++.+++.++.++.+++||.++++.+.++.....+  .-+.++++|+.+++.
T Consensus       482 g~~~~~g~~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~y~~~G~~~v~~  537 (677)
T 1kb0_A          482 GTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQYVSV  537 (677)
T ss_dssp             CEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEE
T ss_pred             cceEeCCCEEEEECCCCcEEEEECCCCceeeeeeCCCCcccCCEEEEeCCEEEEEE
Confidence            345567778888999999999999999999888744322  224456888765543

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=98.32  E-value=4.7e-05  Score=61.85  Aligned_cols=147  Identities=12%  Similarity=0.138  Sum_probs=98.5

Q ss_pred             EEEcCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEEEecCC----------ceEEEEEECCCCC---E
Q psy10953         17 VVFSPDDKYVLSGSQS----------------GKINLYGVETGKLEQIFDTRG----------KFTLSIAYSTDGH---W   67 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~s~d~~---~   67 (181)
                      +++.++...++.+..+                +.|..+|.++|+.+-.++...          ..+ -+...++|+   .
T Consensus       240 ~a~d~~~g~vy~~~g~~~~~~~~~~~gd~~y~~~v~Ald~~tG~~~W~~~~~~~d~~d~~~~~~p~-l~~~~~~G~~~~~  318 (571)
T 2ad6_A          240 YAYDPKLNLFYYGSGNPAPWNETMRPGDNKWTMTIWGRDLDTGMAKWGYQKTPHDEWDFAGVNQMV-LTDQPVNGKMTPL  318 (571)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTTTEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEEETTEEEEE
T ss_pred             EEEcCCCCeEEEECCCCccccCCccCCCceeEEEEEEEecCCCcEEEEecCCCCcccccccCCCCE-EEecccCCcEEEE
Confidence            5566766677665532                359999999999886665421          111 122234674   5


Q ss_pred             EEEeeCCCcEEEEeCCCCCccc---------------------E--------------------------EEEEEcCCCC
Q psy10953         68 IASGALDGIINIFDANTGHSSW---------------------V--------------------------LSTAFTRDGK  100 (181)
Q Consensus        68 l~~~~~d~~v~i~d~~~~~~~~---------------------v--------------------------~~~~~s~~~~  100 (181)
                      ++.++.+|.++.+|..+++..+                     +                          ..++++|+..
T Consensus       319 v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~g  398 (571)
T 2ad6_A          319 LSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGVDSYDPESR  398 (571)
T ss_dssp             EEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTTT
T ss_pred             EEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCCceECCCCC
Confidence            6778889999999987653211                     0                          1246777766


Q ss_pred             EEEEEe-------------------------------------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE
Q psy10953        101 FFISAS-------------------------------------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF  143 (181)
Q Consensus       101 ~l~~~~-------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l  143 (181)
                      ++....                                     .++.++.||+.+++...++.....+++..+...+..+
T Consensus       399 ~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~~~t~gg~v  478 (571)
T 2ad6_A          399 TLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLV  478 (571)
T ss_dssp             EEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEE
T ss_pred             EEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCccceeEEECCCEE
Confidence            554432                                     3478999999999988887655544444444456777


Q ss_pred             EEEcCCCcEEEEeCCCCeeEE
Q psy10953        144 VSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      +.++.|+.++.+|..+++++-
T Consensus       479 ~~g~~dg~l~a~D~~tG~~lw  499 (571)
T 2ad6_A          479 WYATLDGYLKALDNKDGKELW  499 (571)
T ss_dssp             EEECTTSEEEEEETTTCCEEE
T ss_pred             EEEcCCCeEEEEECCCCCEEE
Confidence            778999999999999988763

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.32  E-value=2.9e-05  Score=59.23  Aligned_cols=139  Identities=13%  Similarity=0.134  Sum_probs=91.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---------ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---------KFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLS   92 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---------~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~   92 (181)
                      ++..+++++.++.|..+|.++++.+-.+....         ..+ ......++..++.++.++.+..+|..++...+...
T Consensus        52 ~~~~v~~~~~~g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~v~~~~g~l~a~d~~tG~~~W~~~  130 (376)
T 3q7m_A           52 ADNVVYAADRAGLVKALNADDGKEIWSVSLAEKDGWFSKEPALL-SGGVTVSGGHVYIGSEKAQVYALNTSDGTVAWQTK  130 (376)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCC---CCSCCCCCE-EEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCeEEEEEccCCceeeeecCccccccccccCccc-ccCceEeCCEEEEEcCCCEEEEEECCCCCEEEEEe
Confidence            45677788889999999999999875555421         111 11222245667788889999999998775432211


Q ss_pred             EE----EcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEE------EEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         93 TA----FTR--DGKFFISASADHTVRVWNFARRENMHTFKHADQVW------CVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        93 ~~----~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~------~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                      +.    -+|  .+..++.++.++.++.+|..+++.+........+.      ..+..  +..++.+..++.+..++..++
T Consensus       131 ~~~~~~~~p~~~~~~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~--~~~v~~g~~~g~l~~~d~~tG  208 (376)
T 3q7m_A          131 VAGEALSRPVVSDGLVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTTA--FGAAVVGGDNGRVSAVLMEQG  208 (376)
T ss_dssp             CSSCCCSCCEEETTEEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEEE--TTEEEECCTTTEEEEEETTTC
T ss_pred             CCCceEcCCEEECCEEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEEE--CCEEEEEcCCCEEEEEECCCC
Confidence            10    001  13456677889999999999998887766433321      12222  456777888899999999888


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      +.+
T Consensus       209 ~~~  211 (376)
T 3q7m_A          209 QMI  211 (376)
T ss_dssp             CEE
T ss_pred             cEE
Confidence            765

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=98.30  E-value=6.5e-05  Score=61.38  Aligned_cols=146  Identities=14%  Similarity=0.168  Sum_probs=97.1

Q ss_pred             EEEcCCCCEEEEEeCC----------------CcEEEEeCCCCcEEEEEecCCc----------eEEEEEEC-CCC---C
Q psy10953         17 VVFSPDDKYVLSGSQS----------------GKINLYGVETGKLEQIFDTRGK----------FTLSIAYS-TDG---H   66 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d----------------~~i~~~d~~~~~~~~~~~~~~~----------~~~~~~~s-~d~---~   66 (181)
                      .++.++..+++.+..+                ..|..+|.++|+.+-.++....          .+ -+... .+|   +
T Consensus       246 ~a~d~~~g~vy~g~g~~~p~~~~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~-l~d~~~~~G~~~~  324 (599)
T 1w6s_A          246 YAYDPGTNLIYFGTGNPAPWNETMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMM-LSEQKDKDGKARK  324 (599)
T ss_dssp             CEEETTTTEEEEECCCCSCSCGGGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCE-EEEEECTTSCEEE
T ss_pred             eeEeCCCCEEEEeCCCCccccCcccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccE-EEeccccCCcEEE
Confidence            4566777777776654                3799999999999876665321          11 12222 567   4


Q ss_pred             EEEEeeCCCcEEEEeCCCCCccc---------------------E--------------------------EEEEEcCCC
Q psy10953         67 WIASGALDGIINIFDANTGHSSW---------------------V--------------------------LSTAFTRDG   99 (181)
Q Consensus        67 ~l~~~~~d~~v~i~d~~~~~~~~---------------------v--------------------------~~~~~s~~~   99 (181)
                      .++.++.+|.++++|..+++..+                     +                          ..++++|+.
T Consensus       325 ~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~~a~dp~~  404 (599)
T 1w6s_A          325 LLTHPDRNGIVYTLDRTDGALVSANKLDDTVNVFKSVDLKTGQPVRDPEYGTRMDHLAKDICPSAMGYHNQGHDSYDPKR  404 (599)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCCEEECGGGCCCTTCCEEEESSCTTCSSCSCBCEEETTT
T ss_pred             EEEEECCCcEEEEEECCCCCEeecccccCCcccccccccCCCceeeccccCCCCCCCccEeccCcccccCCCCccCCCCC
Confidence            56778899999999987654211                     0                          124566665


Q ss_pred             CEEEEEe---------------------------------------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCC
Q psy10953        100 KFFISAS---------------------------------------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDG  140 (181)
Q Consensus       100 ~~l~~~~---------------------------------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g  140 (181)
                      +++....                                       ..+.++-||+.+++.+.+.+...+.++-.+...+
T Consensus       405 ~~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~p~~~~~~~~~~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tag  484 (599)
T 1w6s_A          405 ELFFMGINHICMDWEPFMLPYKAGQFFVGATLNMYPGPKGDRQNYEGLGQIKAYNAITGDYKWEKMERFAVWGGTMATAG  484 (599)
T ss_dssp             TEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSBTTTTBCCEEEEEECTTTCCEEEEEEESSCCCSBCEEETT
T ss_pred             CEEEEeccccceeeecccccccCCcceecccceeccCCcCCcccCCCcCeEEEEECCCCCEEeEecCCCCccCcceEecC
Confidence            5443321                                       3467889999999888777654433332233456


Q ss_pred             CEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        141 DKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       141 ~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ..++.++.|+.++.||..+++++
T Consensus       485 g~vf~gt~dg~l~A~D~~tG~~l  507 (599)
T 1w6s_A          485 DLVFYGTLDGYLKARDSDTGDLL  507 (599)
T ss_dssp             TEEEEECTTSEEEEEETTTCCEE
T ss_pred             CEEEEECCCCeEEEEECCCCCEE
Confidence            77777899999999999888765

>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3

Probab=98.29  E-value=0.00049  Score=51.10  Aligned_cols=143  Identities=10%  Similarity=0.091  Sum_probs=90.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC-C-cEEEEeCCCCCc---
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD-G-IINIFDANTGHS---   87 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d-~-~v~i~d~~~~~~---   87 (181)
                      ....++|+++|+++++-...+.|..||..+ +....+... .....++++++|+++++.... + .+..+|..++..   
T Consensus        33 ~pegia~~~~g~lyv~d~~~~~I~~~d~~g-~~~~~~~~~-~~p~gia~~~dG~l~vad~~~~~~~v~~~d~~~g~~~~~  110 (306)
T 2p4o_A           33 FLENLASAPDGTIFVTNHEVGEIVSITPDG-NQQIHATVE-GKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETL  110 (306)
T ss_dssp             CEEEEEECTTSCEEEEETTTTEEEEECTTC-CEEEEEECS-SEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEE
T ss_pred             CcceEEECCCCCEEEEeCCCCeEEEECCCC-ceEEEEeCC-CCceeEEEcCCCcEEEEeccCCcceEEEEcCCCCeEEEE
Confidence            356899999999777766789999998765 444444433 345689999999966654332 2 466677654431   


Q ss_pred             ------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc-eeee--------e--ecCCcEEEEEEccCCCEEEEEc-CC
Q psy10953         88 ------SWVLSTAFTRDGKFFISASADHTVRVWNFARRE-NMHT--------F--KHADQVWCVCVAPDGDKFVSVG-ED  149 (181)
Q Consensus        88 ------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~~~--------~--~~~~~v~~~~~sp~g~~l~~~~-~d  149 (181)
                            .....++..++++.+++-..++.|+++|...+. .+..        .  ..-...+.+  +|++++++.+. ..
T Consensus       111 ~~~~~~~~~~g~~~~~~~~~~v~d~~~g~i~~~d~~~~~~~v~~~~~~~~~~~~~~~~~~pngi--s~dg~~lyv~d~~~  188 (306)
T 2p4o_A          111 LTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGL--KRFGNFLYVSNTEK  188 (306)
T ss_dssp             EECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEE--EEETTEEEEEETTT
T ss_pred             EeCCCccccCcccccCCCcEEEEECCCCeEEEEeCCCCcEeEEEECCccccccccCCCCcCCCc--CcCCCEEEEEeCCC
Confidence                  122344445555556655568899999986542 1110        0  011234555  88888765554 56


Q ss_pred             CcEEEEeCCC
Q psy10953        150 KAVHMYSYKP  159 (181)
Q Consensus       150 ~~v~i~~~~~  159 (181)
                      +.|..|++..
T Consensus       189 ~~I~~~~~~~  198 (306)
T 2p4o_A          189 MLLLRIPVDS  198 (306)
T ss_dssp             TEEEEEEBCT
T ss_pred             CEEEEEEeCC
Confidence            7899999864

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=98.25  E-value=6.6e-05  Score=61.15  Aligned_cols=147  Identities=14%  Similarity=0.257  Sum_probs=97.0

Q ss_pred             EEEEcCCCCEEEEEeC--------------------C----CcEEEEeCCCCcEEEEEecCC----------ceEEEEEE
Q psy10953         16 NVVFSPDDKYVLSGSQ--------------------S----GKINLYGVETGKLEQIFDTRG----------KFTLSIAY   61 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~--------------------d----~~i~~~d~~~~~~~~~~~~~~----------~~~~~~~~   61 (181)
                      ..+++|+..+++.+..                    |    +.|..+|.++|+.+-.++...          ..+ -+..
T Consensus       250 ~~a~d~~~g~vyv~~gn~~~~~~~~r~~~gg~~~~~d~~~~~~v~AlD~~TG~~~W~~q~~~~d~wd~~~~~~p~-l~~~  328 (582)
T 1flg_A          250 SASFDAETNTIIVGAGNPGPWNTWARTAKGGNPHDYDSLYTSGQVGVDPSSGEVKWFYQHTPNDAWDFSGNNELV-LFDY  328 (582)
T ss_dssp             CCEEETTTTEEEEEECCBSSSCGGGGSCTTSCSTTCCCTTCSEEEEECTTTCCEEEEEESSTTCCSCCCCCCCCE-EEEE
T ss_pred             CceEcCCCCEEEEeCCCCCcccCcccccCCCcccccCCcccceEEEEeCCCCCEEEEEeCCCCCcccccCCCCcE-EEee
Confidence            3567777777776552                    2    589999999999987665421          111 1222


Q ss_pred             C-CCCC---EEEEeeCCCcEEEEeCCCCCccc----------E-------------------------------------
Q psy10953         62 S-TDGH---WIASGALDGIINIFDANTGHSSW----------V-------------------------------------   90 (181)
Q Consensus        62 s-~d~~---~l~~~~~d~~v~i~d~~~~~~~~----------v-------------------------------------   90 (181)
                      . .+|+   .++.++.+|.++.+|..+++..+          .                                     
T Consensus       329 ~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw~~~~~~~~~~~~~~~~~~g~p~~~~~~~~~~~~~~~~~~~~~~~~P~~  408 (582)
T 1flg_A          329 KAKDGKIVKATAHADRNGFFYVVDRSNGKLQNAFPFVDNITWASHIDLKTGRPVEREGQRPPLPEPGQKHGKAVEVSPPF  408 (582)
T ss_dssp             ECSSSCEEEEEEEECTTSEEEEEETTTCCEEEEEESSSCCCSEEEECTTTCCEEECTTCSCCCCCTTCSSCCCEEESSCT
T ss_pred             ecCCCCEEEEEEEECCCceEEEEECCCCCEecccccccCccccccccccCCCEeEccccCCccccccccCCCceEECcCC
Confidence            1 4674   67788999999999987653210          0                                     


Q ss_pred             ------EEEEEcCCCCEEEEEe---------------------------------CCCcEEEEecCCCceeeeeecCCcE
Q psy10953         91 ------LSTAFTRDGKFFISAS---------------------------------ADHTVRVWNFARRENMHTFKHADQV  131 (181)
Q Consensus        91 ------~~~~~s~~~~~l~~~~---------------------------------~d~~i~v~d~~~~~~~~~~~~~~~v  131 (181)
                            ..++++|+...+....                                 .++.++-||+.+++...+.+.....
T Consensus       409 ~Gg~~w~~~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~p~~~~~~G~l~A~D~~tG~~~W~~~~~~~~  488 (582)
T 1flg_A          409 LGGKNWNPMAYSQDTGLFYVPANHWKEDYWTEEVSYTKGSAYLGMGFRIKRMYDDHVGSLRAMDPVSGKVVWEHKEHLPL  488 (582)
T ss_dssp             TCSSCSSCCEECTTTCCEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEESCSSCSEEEEEECTTTCCEEEEEEESSCC
T ss_pred             ccccCCCCceECCCCCEEEEechhcceeeecccccccCCCceeccceeecCCCCCCcceEEEEECCCCCEEEEecCCCCC
Confidence                  0235566544333321                                 2578999999999988777654444


Q ss_pred             EEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        132 WCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       132 ~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      +...+...+..++.++.|+.++.||..+++++
T Consensus       489 ~~g~~~tagglvf~g~~dg~l~A~D~~tG~~l  520 (582)
T 1flg_A          489 WAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             CSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cccceEeCCCEEEEECCCCcEEEEECCCCCEE
Confidence            43333335677888999999999999998776

>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}

Probab=98.21  E-value=6.3e-05  Score=62.44  Aligned_cols=142  Identities=18%  Similarity=0.279  Sum_probs=94.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-C-ceEEEEEECC---CCCEEEEee------CCCcEEEEeCCCCCcccE
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTR-G-KFTLSIAYST---DGHWIASGA------LDGIINIFDANTGHSSWV   90 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~-~~~~~~~~s~---d~~~l~~~~------~d~~v~i~d~~~~~~~~v   90 (181)
                      ++..+++++.|+.|..+|.++|+.+-.+... . .....+..+|   ++. ++.+.      .++.++.||+.++...+.
T Consensus       120 ~~g~v~v~~~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~-v~vg~~~~~~~~~g~v~a~D~~tG~~~W~  198 (689)
T 1yiq_A          120 WKGKVYVGVLDGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGK-VVIGNGGAEFGVRGYVTAYDAETGKEAWR  198 (689)
T ss_dssp             ETTEEEEECTTSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTE-EEECCBCTTTCCBCEEEEEETTTCCEEEE
T ss_pred             ECCEEEEEccCCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCE-EEEEeCCCccCCCCEEEEEECCCCcEEEE
Confidence            4567888889999999999999988665542 1 0000111122   444 44443      368899999887653221


Q ss_pred             ---------------------------------------EEEEEcCCCCEEEEEeCCC-------------------cEE
Q psy10953         91 ---------------------------------------LSTAFTRDGKFFISASADH-------------------TVR  112 (181)
Q Consensus        91 ---------------------------------------~~~~~s~~~~~l~~~~~d~-------------------~i~  112 (181)
                                                             ..++++|++..+..++.++                   .|.
T Consensus       199 ~~~~~~~p~~~~~~~~~~~~~~~~~g~~w~~~~~g~~~w~~~~~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~~y~~~v~  278 (689)
T 1yiq_A          199 FYTVPGDPKLPPEGKGMEIAAKTWFGDAYVEQGGGGTAWDSFAYDPELNLLYIGVGNGSLWDPKWRSQAKGDNLFLSSIV  278 (689)
T ss_dssp             EESSCCCTTSCCCSHHHHHHHTTCCSSTHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHHTTCSCCTTTTEEE
T ss_pred             ecccCCCcccccccccccccccccCCceeeecCCCCccccceeEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEE
Confidence                                                   1356788888887777665                   399


Q ss_pred             EEecCCCceeeeeec--C--------CcEEEEEEccCCC---EEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        113 VWNFARRENMHTFKH--A--------DQVWCVCVAPDGD---KFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       113 v~d~~~~~~~~~~~~--~--------~~v~~~~~sp~g~---~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .+|.++++....++.  .        ..+....+..+|+   .++.++.++.++++|..+|+.+.
T Consensus       279 AlD~~TG~~~W~~~~~~~d~wd~~~~~~~~l~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l~  343 (689)
T 1yiq_A          279 AVNADTGEYVWHYQTTPGDAWDYTATQHMILAELPIDGKPRKVLMQAPKNGFFYVIDRATGELLS  343 (689)
T ss_dssp             EEETTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEEE
T ss_pred             EEEccCCceeEeeecCCcccccccCCCCcEEEeeccCCcEEEEEEEECCCCeEEEEECCCCCEec
Confidence            999999998877652  1        1122222333665   68888899999999999998763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.21  E-value=0.00033  Score=51.09  Aligned_cols=144  Identities=12%  Similarity=0.140  Sum_probs=91.5

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE---EEEEec------CCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL---EQIFDT------RGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~---~~~~~~------~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+.-.|++.+++.++++.-.++.+.++++.....   ......      ...-...++++|+++.|.++....-..+|..
T Consensus        70 ~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~  149 (255)
T 3qqz_A           70 KDLETIEYIGDNQFVISDERDYAIYVISLTPNSEVKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKV  149 (255)
T ss_dssp             SSEEEEEECSTTEEEEEETTTTEEEEEEECTTCCEEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEE
T ss_pred             CChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCeeeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEE
Confidence            4556788888998777766778899998764432   222211      1122368999999987777665444344433


Q ss_pred             CC------------------CCcccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeeecC----------CcEEE
Q psy10953         83 NT------------------GHSSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFKHA----------DQVWC  133 (181)
Q Consensus        83 ~~------------------~~~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~~~----------~~v~~  133 (181)
                      ..                  .......+++++|.. ++++.+...+.+..+|.... .+..+...          ....+
T Consensus       150 ~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~tg~lliLS~~s~~L~~~d~~g~-~~~~~~L~~g~~~l~~~~~qpEG  228 (255)
T 3qqz_A          150 NGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQKNTLLVLSHESRALQEVTLVGE-VIGEMSLTKGSRGLSHNIKQAEG  228 (255)
T ss_dssp             ESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETTTTEEEEEETTTTEEEEECTTCC-EEEEEECSTTGGGCSSCCCSEEE
T ss_pred             cccccCCceeeecchhhccccccCCceeEEEcCCCCeEEEEECCCCeEEEEcCCCC-EEEEEEcCCccCCcccccCCCCe
Confidence            21                  011234678899964 56666667788999997643 44444322          25789


Q ss_pred             EEEccCCCEEEEEcCCCcEEEEeC
Q psy10953        134 VCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      ++|.|+|+.+++ ++-+.++.+.-
T Consensus       229 ia~d~~G~lyIv-sE~n~~y~f~~  251 (255)
T 3qqz_A          229 VAMDASGNIYIV-SEPNRFYRFTP  251 (255)
T ss_dssp             EEECTTCCEEEE-ETTTEEEEEEC
T ss_pred             eEECCCCCEEEE-cCCceEEEEEe
Confidence            999999985554 66677777654

>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A

Probab=98.18  E-value=0.00017  Score=54.91  Aligned_cols=135  Identities=12%  Similarity=0.092  Sum_probs=83.4

Q ss_pred             EEEEEeCCCcEEEEeCCCCcEEEEEecCCceE-----EEEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEE------
Q psy10953         25 YVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-----LSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLST------   93 (181)
Q Consensus        25 ~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~-----~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~------   93 (181)
                      .++.++.++.+..+|.++++....+.......     .....  ++..++.+..++.+..+|..++...+....      
T Consensus       145 ~v~v~~~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~--~~~~v~~g~~~g~l~~~d~~tG~~~w~~~~~~~~~~  222 (376)
T 3q7m_A          145 LVLIHTSNGQLQALNEADGAVKWTVNLDMPSLSLRGESAPTT--AFGAAVVGGDNGRVSAVLMEQGQMIWQQRISQATGS  222 (376)
T ss_dssp             EEEEECTTSEEEEEETTTCCEEEEEECCC-----CCCCCCEE--ETTEEEECCTTTEEEEEETTTCCEEEEEECCC----
T ss_pred             EEEEEcCCCeEEEEECCCCcEEEEEeCCCCceeecCCCCcEE--ECCEEEEEcCCCEEEEEECCCCcEEEEEecccCCCC
Confidence            45556666677777777676654443322110     01111  134567778888999999877654322211      


Q ss_pred             ---------EEcC--CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCee
Q psy10953         94 ---------AFTR--DGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus        94 ---------~~s~--~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~  162 (181)
                               .-.|  .+..+..++.++.++.+|..+++.+...... ....+..  ++..++.++.++.+..++..+++.
T Consensus       223 ~~~~~~~~~~~~p~~~~~~v~~~~~~g~l~~~d~~tG~~~w~~~~~-~~~~~~~--~~~~l~~~~~~g~l~~~d~~tG~~  299 (376)
T 3q7m_A          223 TEIDRLSDVDTTPVVVNGVVFALAYNGNLTALDLRSGQIMWKRELG-SVNDFIV--DGNRIYLVDQNDRVMALTIDGGVT  299 (376)
T ss_dssp             -------CCCCCCEEETTEEEEECTTSCEEEEETTTCCEEEEECCC-CEEEEEE--ETTEEEEEETTCCEEEEETTTCCE
T ss_pred             cccccccccCCCcEEECCEEEEEecCcEEEEEECCCCcEEeeccCC-CCCCceE--ECCEEEEEcCCCeEEEEECCCCcE
Confidence                     1112  2455666778899999999998877665533 2334443  466788888889999999988876


Q ss_pred             EE
Q psy10953        163 VE  164 (181)
Q Consensus       163 ~~  164 (181)
                      +-
T Consensus       300 ~w  301 (376)
T 3q7m_A          300 LW  301 (376)
T ss_dssp             EE
T ss_pred             EE
Confidence            53

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=98.18  E-value=7.5e-05  Score=55.47  Aligned_cols=127  Identities=17%  Similarity=0.229  Sum_probs=85.7

Q ss_pred             CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc--------ccEEEEE
Q psy10953         23 DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS--------SWVLSTA   94 (181)
Q Consensus        23 g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~--------~~v~~~~   94 (181)
                      +..++.++.++.+..+|.. ++....+......+.++...+++. +..+..++.+..+|.. +..        ..+..+.
T Consensus       107 ~~~l~v~t~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~  183 (330)
T 3hxj_A          107 EDILYVTSMDGHLYAINTD-GTEKWRFKTKKAIYATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAAS  183 (330)
T ss_dssp             TTEEEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCE
T ss_pred             CCEEEEEecCCEEEEEcCC-CCEEEEEcCCCceeeeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeE
Confidence            5567778888999999988 776655554444444566677777 5557777889999987 432        2234456


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         95 FTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        95 ~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                      .+++++.++..   +.+..+| .+++...... ....+.+++++++|+.. .++.++.+..++.
T Consensus       184 ~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~~~~~~~~~~~~~g~l~-v~t~~~gl~~~~~  242 (330)
T 3hxj_A          184 IGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAGYWTVTRPAISEDGTIY-VTSLDGHLYAINP  242 (330)
T ss_dssp             ECTTCCEEEES---SSEEEEC-TTSCEEEEECCSSCCCSCCEECTTSCEE-EEETTTEEEEECT
T ss_pred             EcCCCEEEEEe---CEEEEEC-CCCcEEEEEccCCcceeceEECCCCeEE-EEcCCCeEEEECC
Confidence            66778866544   7899999 6666555554 33457778888887544 4666777888764

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=98.14  E-value=0.0015  Score=50.63  Aligned_cols=153  Identities=6%  Similarity=-0.032  Sum_probs=95.2

Q ss_pred             CeeeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCC----cEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeCC
Q psy10953         10 GPVDMWNVVFSPDDKYVL-SGSQSGKINLYGVETG----KLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDAN   83 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~   83 (181)
                      .......++|++.++.|+ +-...+.|+.+++...    .....+...-.....+++++.+..|+ +-...+.|.+.++.
T Consensus       110 ~~~~~~~l~~d~~~~~lywsD~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavD~~~~~lY~~d~~~~~I~~~~~~  189 (400)
T 3p5b_L          110 NLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTK  189 (400)
T ss_dssp             SCSCEEEEEEETTTTEEEEEETTTTEEEEEEC------CCCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEECTT
T ss_pred             ccCcceEEeeeeccCceEEEecCCCeEEEEEcccCCCCCcceEEEeCCCCCcccEEEEecCCceEEEECCCCeEEEEeCC
Confidence            344567899998666554 4445678888888652    23333332223345788887555454 44557788888886


Q ss_pred             CCC--------cccEEEEEEcCCCCEEEEEe-C-CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCc
Q psy10953         84 TGH--------SSWVLSTAFTRDGKFFISAS-A-DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKA  151 (181)
Q Consensus        84 ~~~--------~~~v~~~~~s~~~~~l~~~~-~-d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~  151 (181)
                      ...        ......++++|.+..|.... . .+.|...++.......... .-.....++++|+++.|+.+. ..+.
T Consensus       190 g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~~~~~~~l~~P~glavd~~~~~lY~aD~~~~~  269 (400)
T 3p5b_L          190 GVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHS  269 (400)
T ss_dssp             TCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTE
T ss_pred             CCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccEEEEECCCCceEEEEEEeCCCEEEEEECCCCE
Confidence            432        23467889999655444443 2 3688888886543322222 224688999998877766554 4678


Q ss_pred             EEEEeCCCCee
Q psy10953        152 VHMYSYKPEEE  162 (181)
Q Consensus       152 v~i~~~~~~~~  162 (181)
                      |..+++.....
T Consensus       270 I~~~d~dG~~~  280 (400)
T 3p5b_L          270 ISSIDVNGGNR  280 (400)
T ss_dssp             EEEEETTSCCC
T ss_pred             EEEEeCCCCcc
Confidence            99999865443

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=98.11  E-value=0.00071  Score=51.54  Aligned_cols=139  Identities=15%  Similarity=0.219  Sum_probs=79.3

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-----CCceEEEEEECCC---CCEEEEeeC-C
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-----RGKFTLSIAYSTD---GHWIASGAL-D   74 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-----~~~~~~~~~~s~d---~~~l~~~~~-d   74 (181)
                      +..+.......+.++|.|||++++ +..++.|++++  +++.......     .......++++|+   +..|+.... .
T Consensus        23 ~~~va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~i~--~g~~~~~~~~~v~~~g~~~p~gia~~pdf~~~g~lYv~~~~~   99 (352)
T 2ism_A           23 VEEVVGGLEVPWALAFLPDGGMLI-AERPGRIRLFR--EGRLSTYAELSVYHRGESGLLGLALHPRFPQEPYVYAYRTVA   99 (352)
T ss_dssp             EEEEECCCSCEEEEEECTTSCEEE-EETTTEEEEEE--TTEEEEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEC
T ss_pred             EEEEECCCCCceEEEEcCCCeEEE-EeCCCeEEEEE--CCCccEeecceEeecCCCCceeEEECCCCCCCCEEEEEEecC
Confidence            444555555678999999998554 45679999998  4543322111     1223568999998   544444322 2


Q ss_pred             -----CcEEEEeCCCC-----------------CcccEEEEEEcCCCCEEEEEeCC-------------CcEEEEecCCC
Q psy10953         75 -----GIINIFDANTG-----------------HSSWVLSTAFTRDGKFFISASAD-------------HTVRVWNFARR  119 (181)
Q Consensus        75 -----~~v~i~d~~~~-----------------~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~v~d~~~~  119 (181)
                           +.|..++....                 .......++|.|+|.++++.+..             +.|.-++....
T Consensus       100 ~~~~~~~v~r~~~~~~~~~~~~~l~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~G~~~~~~~~~d~~~~~g~I~ri~~dG~  179 (352)
T 2ism_A          100 EGGLRNQVVRLRHLGERGVLDRVVLDGIPARPHGLHSGGRIAFGPDGMLYVTTGEVYERELAQDLASLGGKILRLTPEGE  179 (352)
T ss_dssp             TTSSEEEEEEEEECSSCEEEEEEEEEEECCCTTCCCCCCCEEECTTSCEEEECCCTTCGGGGGCTTCSSSEEEEECTTSS
T ss_pred             CCCCccEEEEEEeCCCCcCceEEEEEeCCCCCCCCcCCceEEECCCCCEEEEECCCCCCccccCCCCCceEEEEEcCCCC
Confidence                 45666654321                 00122468899999877775421             45665655320


Q ss_pred             --------------ceeeeeecCCcEEEEEEcc-CCCEEEEE
Q psy10953        120 --------------ENMHTFKHADQVWCVCVAP-DGDKFVSV  146 (181)
Q Consensus       120 --------------~~~~~~~~~~~v~~~~~sp-~g~~l~~~  146 (181)
                                    ..+....+ ...+.++|+| +|+.+++-
T Consensus       180 ~p~~npf~~~~~~~~~i~a~G~-rnp~g~a~d~~~g~l~v~d  220 (352)
T 2ism_A          180 PAPGNPFLGRRGARPEVYSLGH-RNPQGLAWHPKTGELFSSE  220 (352)
T ss_dssp             BCTTCTTTTCTTSCTTEEEECC-SEECCCEECTTTCCEEEEE
T ss_pred             CCCCCcccCCCCCCccEEEEcC-CCcccEEEECCCCCEEEEE
Confidence                          01111112 2367899999 56655543

>3v64_C Agrin; beta propeller, laminin-G, signaling, protein binding; HET: NAG; 2.85A {Rattus norvegicus}

Probab=98.08  E-value=0.0018  Score=49.26  Aligned_cols=148  Identities=9%  Similarity=0.047  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee-CC-CcEEEEeCCCC-----
Q psy10953         14 MWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA-LD-GIINIFDANTG-----   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~-~d-~~v~i~d~~~~-----   85 (181)
                      ...+++.+.+..| ++-...+.|.+.++........+...-.....++++|++..|+... .. +.|..++....     
T Consensus       118 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~l~~P~~iavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  197 (349)
T 3v64_C          118 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  197 (349)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECTTCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEES
T ss_pred             ccEEEEecCCCeEEEEcCCCCeEEEEcCCCCceEEEEeCCCCCcceEEEecCcCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            4678888755544 5555677899999875544444433323346899998766555443 33 67888876532     


Q ss_pred             ---CcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         86 ---HSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                         .......++++|++. ++++-+..+.|..+|+.......... ......++++ ..+..+++-...+.|..++..++
T Consensus       198 ~~~~~~~PnGla~d~~~~~lY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  276 (349)
T 3v64_C          198 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  276 (349)
T ss_dssp             CCSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCcceEEEeCCCCEEEEEECCCCEEEEEeCCCCceEEEEeCCCCCceEEEE-ECCEEEEecCCCCeEEEEEccCC
Confidence               123578999998665 44555556789999986543222222 2345677888 35556666666788988885555


Q ss_pred             ee
Q psy10953        161 EE  162 (181)
Q Consensus       161 ~~  162 (181)
                      ..
T Consensus       277 ~~  278 (349)
T 3v64_C          277 KN  278 (349)
T ss_dssp             CS
T ss_pred             Cc
Confidence            43

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.06  E-value=0.0017  Score=48.52  Aligned_cols=151  Identities=10%  Similarity=0.045  Sum_probs=96.1

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--CcEEEEeCCCC----
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--GIINIFDANTG----   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--~~v~i~d~~~~----   85 (181)
                      ....+++++.++.| ++-...+.|.+++.........+.........++++|++..|+.....  +.|...+....    
T Consensus        78 ~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~  157 (316)
T 1ijq_A           78 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  157 (316)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcCEEEEeecCCeEEEEECCCCEEEEEeCCCCceEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEE
Confidence            34678888755544 555667899999987655444444333345688999876655554432  67888876532    


Q ss_pred             ----CcccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 ----HSSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                          .......++++|++..| ++-+..+.|..+|+..........   ......++++. .+..+++-...+.|..++.
T Consensus       158 ~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~~d~dg~~~~~~~~~~~~~~~P~giav~-~~~ly~~d~~~~~V~~~~~  236 (316)
T 1ijq_A          158 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSANR  236 (316)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEET
T ss_pred             EEECCCCCceEEEEeccCCEEEEEECCCCeEEEEecCCCceEEEeecCCccCCcEEEEEE-CCEEEEEECCCCeEEEEeC
Confidence                12356789999876544 444456789999986432221111   12346788885 4556666666789999987


Q ss_pred             CCCeeEE
Q psy10953        158 KPEEEVE  164 (181)
Q Consensus       158 ~~~~~~~  164 (181)
                      .++..++
T Consensus       237 ~~g~~~~  243 (316)
T 1ijq_A          237 LTGSDVN  243 (316)
T ss_dssp             TTCCCCE
T ss_pred             CCCcceE
Confidence            6665443

>1ijq_A LDL receptor, low-density lipoprotein receptor; beta-propeller, lipid transport; 1.50A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1

Probab=98.05  E-value=0.0018  Score=48.36  Aligned_cols=148  Identities=6%  Similarity=-0.036  Sum_probs=90.3

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCC----CcEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCC
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVET----GKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDANTGH   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~   86 (181)
                      ....++|+++++.| ++-...+.|..++..+    ......+...-.....+++++.+..|+ +-...+.|.++++....
T Consensus        31 ~p~g~~~d~~~~~ly~~D~~~~~I~~~~~~g~~~~~~~~~~~~~~~~~p~glavd~~~~~ly~~d~~~~~I~~~~~~g~~  110 (316)
T 1ijq_A           31 NVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVK  110 (316)
T ss_dssp             SEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSSS
T ss_pred             ceEEEEEEeCCCEEEEEECCCCcEEEEECCCCCCCcccEEEEeCCCCCcCEEEEeecCCeEEEEECCCCEEEEEeCCCCc
Confidence            35688999876655 4555568899999876    222233322212234788886555454 44567788888876432


Q ss_pred             --------cccEEEEEEcCCCCEEEEEeC-C-CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcEEE
Q psy10953         87 --------SSWVLSTAFTRDGKFFISASA-D-HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAVHM  154 (181)
Q Consensus        87 --------~~~v~~~~~s~~~~~l~~~~~-d-~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~i  154 (181)
                              ......++++|.+..+..+.. . +.|..+++.......... .-.....++++|+++.|+.+. ..+.|..
T Consensus       111 ~~~~~~~~~~~P~~iavdp~~g~ly~~d~~~~~~I~~~~~dG~~~~~~~~~~~~~P~gla~d~~~~~lY~~D~~~~~I~~  190 (316)
T 1ijq_A          111 RKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISS  190 (316)
T ss_dssp             EEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEE
T ss_pred             eEEEEECCCCCcceEEeCCCCCEEEEEccCCCCeEEEEcCCCCCeEEEEECCCCCceEEEEeccCCEEEEEECCCCeEEE
Confidence                    234678899986554444443 3 678888875432221111 234578999999877665554 5678999


Q ss_pred             EeCCCC
Q psy10953        155 YSYKPE  160 (181)
Q Consensus       155 ~~~~~~  160 (181)
                      +++...
T Consensus       191 ~d~dg~  196 (316)
T 1ijq_A          191 IDVNGG  196 (316)
T ss_dssp             EETTSC
T ss_pred             EecCCC
Confidence            998643

>3tc9_A Hypothetical hydrolase; 6-bladed beta-propeller, immunoglobulin-like, structural GEN joint center for structural genomics, JCSG; 2.23A {Bacteroides thetaiotaomicron}

Probab=98.04  E-value=0.00061  Score=53.35  Aligned_cols=144  Identities=11%  Similarity=0.149  Sum_probs=89.6

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCC-----
Q psy10953         14 MWNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIAS-GALDGIINIFDANTG-----   85 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~-----   85 (181)
                      ...++++| +|.++++-...+.|..++..++......... ......++++|+|++|+. -...+.|..++....     
T Consensus       228 p~giavdp~~g~lyv~d~~~~~V~~~~~~~~~~~~~~~~~~~~~P~gia~~pdG~~lyv~d~~~~~I~~~~~d~~~~~~~  307 (430)
T 3tc9_A          228 CNGAETHPINGELYFNSWNAGQVFRYDFTTQETTPLFTIQDSGWEFHIQFHPSGNYAYIVVVNQHYILRSDYDWKTKRLT  307 (430)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEEETTTTEEEEEEECSSSSCCEEEEECTTSSEEEEEETTTTEEEEEEEETTTTEEC
T ss_pred             ceEEEEeCCCCEEEEEECCCCEEEEEECCCCcEEEEEEcCCCCcceeEEEcCCCCEEEEEECCCCEEEEEeCCccccccc
Confidence            46788999 6666666667789999998877653433332 223458999999995554 455678888765321     


Q ss_pred             ----------C------------cccEE-EEEEc--------CCCCEEEEEeCCCcEEEEecCCCceeeeeec-------
Q psy10953         86 ----------H------------SSWVL-STAFT--------RDGKFFISASADHTVRVWNFARRENMHTFKH-------  127 (181)
Q Consensus        86 ----------~------------~~~v~-~~~~s--------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------  127 (181)
                                .            -.... .++..        ++|.++++-...+.|+.++. ++........       
T Consensus       308 ~~~~~ag~~g~~g~~dg~~~~a~~~~P~~gv~v~~~~y~~~D~~g~lyvaD~~n~~I~~i~~-~G~v~~~~g~g~~~~~G  386 (430)
T 3tc9_A          308 TPYIVCGQQGAKDWVDGVGKKARMHAPRQGTFVKNPAYKGSSDEYDFYFCDRENHCIRILTP-QGRVTTFAGRGSNGTSG  386 (430)
T ss_dssp             CCEEEEECTTCBCCBCEEGGGCBBSSEEEEEEEECGGGTTSSCCEEEEEEEGGGTEEEEECT-TSEEEEEEECCTTSSSS
T ss_pred             ceEEEeccCCCCCCCCCCCcceEeCCCcceEEEccccccccCCCCeEEEEECCCcEEEEECC-CCcEEEEEeCCCCCCCc
Confidence                      0            01122 34442        44666666666778888874 3432222111       


Q ss_pred             -----------CCcEEEEEEccC-CCEEEEEcCCCcEEEEeCC
Q psy10953        128 -----------ADQVWCVCVAPD-GDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       128 -----------~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~  158 (181)
                                 -...+.++++|+ +..+++-..++.|+.++.+
T Consensus       387 ~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  429 (430)
T 3tc9_A          387 YNDGDLRQEARFNHPEGIVYDEERECFFIGDRENRRIRKIGYE  429 (430)
T ss_dssp             CBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCchhhcEeCCCcEEEEECCCCEEEEEECCCCeEEEEccC
Confidence                       124789999995 6556655567788887753

>4hw6_A Hypothetical protein, IPT/TIG domain protein; putative carbohydrate bindning two domains protein, IPT/TIG (PF01833), 6-beta-propeller; HET: MSE; 1.70A {Bacteroides ovatus}

Probab=98.03  E-value=0.00075  Score=52.93  Aligned_cols=144  Identities=17%  Similarity=0.151  Sum_probs=94.2

Q ss_pred             EEEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcE-EEEEecC-CceEEEEEECCCCCEEEEe-eCCCcEEEEeCC--CCC-
Q psy10953         14 MWNVVFSP-DDKYVLSGSQSGKINLYGVETGKL-EQIFDTR-GKFTLSIAYSTDGHWIASG-ALDGIINIFDAN--TGH-   86 (181)
Q Consensus        14 ~~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~-~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~--~~~-   86 (181)
                      ...++++| +|.+.++-..++.|+.+|..++.. ...+... ......++++|+|++|+.+ ...+.|..++..  ++. 
T Consensus       230 P~giavd~~~G~lyv~d~~~~~V~~~d~~~g~~~~~~~~~~~~~~~~~ia~dpdG~~LYvad~~~~~I~~~~~d~~~~~~  309 (433)
T 4hw6_A          230 AKTCAVHPQNGKIYYTRYHHAMISSYDPATGTLTEEEVMMDTKGSNFHIVWHPTGDWAYIIYNGKHCIYRVDYNRETGKL  309 (433)
T ss_dssp             BCCCEECTTTCCEEECBTTCSEEEEECTTTCCEEEEEEECSCCSSCEEEEECTTSSEEEEEETTTTEEEEEEBCTTTCCB
T ss_pred             CCEEEEeCCCCeEEEEECCCCEEEEEECCCCeEEEEEeccCCCCCcccEEEeCCCCEEEEEeCCCCEEEEEeCCCCCccc
Confidence            35688999 666555655678899999887876 3333221 1222369999999965554 456788887753  110 


Q ss_pred             ------------------------cccEEEEEE---------cCCCCEEEEEeCCCcEEEEecCCCceeeeeec------
Q psy10953         87 ------------------------SSWVLSTAF---------TRDGKFFISASADHTVRVWNFARRENMHTFKH------  127 (181)
Q Consensus        87 ------------------------~~~v~~~~~---------s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~------  127 (181)
                                              -.....+++         .++|+++++-...+.|+.++. ++........      
T Consensus       310 ~~~~~~ag~~g~~g~~dg~~~~a~~~~P~giav~~n~~y~~dd~~g~lyvaD~~n~~I~~~~~-~G~v~t~~G~g~~~~~  388 (433)
T 4hw6_A          310 AVPYIVCGQHSSPGWVDGMGTGARLWGPNQGIFVKNEAYAGEEDEYDFYFCDRDSHTVRVLTP-EGRVTTYAGRGNSREW  388 (433)
T ss_dssp             CCCEEEEECTTCCCCBCEEGGGSBCSSEEEEEEEECGGGTTSSCCEEEEEEETTTTEEEEECT-TSEEEEEECCCTTCSS
T ss_pred             CcEEEEEecCCCCccCCCcccceEEcCCccEEEEccccccccCCCCcEEEEECCCCEEEEECC-CCCEEEEEeCCCCCcc
Confidence                                    123566888         788888888777888999985 3332211110      


Q ss_pred             ------------CCcEEEEEEc-cCCCEEEEEcCCCcEEEEeCC
Q psy10953        128 ------------ADQVWCVCVA-PDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       128 ------------~~~v~~~~~s-p~g~~l~~~~~d~~v~i~~~~  158 (181)
                                  -...++++++ ++|+.+++=..++.|+.++++
T Consensus       389 G~~dG~~~~~~~~~~P~giavd~~~g~lyVaD~~n~rIr~i~~e  432 (433)
T 4hw6_A          389 GYVDGELRSQALFNHPTSIAYDMKRKCFYIGDCDNHRVRKIAPE  432 (433)
T ss_dssp             CCBCEETTTTCBCSSEEEEEEETTTTEEEEEEGGGTEEEEEEEC
T ss_pred             ccCCCccccccEeCCCcEEEEECCCCEEEEEeCCCCEEEEEecC
Confidence                        1247899999 677666666667888887763

>3qqz_A Putative uncharacterized protein YJIK; MCSG, PSI-2, structural genomics, midwest center for structu genomics, TOLB-like, Ca binding; 2.55A {Escherichia coli}

Probab=98.00  E-value=0.0019  Score=47.06  Aligned_cols=150  Identities=15%  Similarity=0.178  Sum_probs=95.5

Q ss_pred             CeeeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--
Q psy10953         10 GPVDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIFDANTG--   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--   85 (181)
                      -...++.++++|+++.|+ +...++.|...|.. +++.+.+...+ .....+++.+++.++++.-.++.+.++++...  
T Consensus        25 ~~~~lSGla~~~~~~~L~aV~d~~~~I~~ld~~-g~v~~~i~l~g~~D~EGIa~~~~g~~~vs~E~~~~l~~~~v~~~~~  103 (255)
T 3qqz_A           25 ITNNISSLTWSAQSNTLFSTINKPAAIVEMTTN-GDLIRTIPLDFVKDLETIEYIGDNQFVISDERDYAIYVISLTPNSE  103 (255)
T ss_dssp             CCSCEEEEEEETTTTEEEEEEETTEEEEEEETT-CCEEEEEECSSCSSEEEEEECSTTEEEEEETTTTEEEEEEECTTCC
T ss_pred             cccCcceeEEeCCCCEEEEEECCCCeEEEEeCC-CCEEEEEecCCCCChHHeEEeCCCEEEEEECCCCcEEEEEcCCCCe
Confidence            334689999999877665 46677889999988 88877765432 23457888888876666555667777765321  


Q ss_pred             ---------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC---Cceeeeee--------cCCcEEEEEEccC
Q psy10953         86 ---------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFAR---RENMHTFK--------HADQVWCVCVAPD  139 (181)
Q Consensus        86 ---------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~---~~~~~~~~--------~~~~v~~~~~sp~  139 (181)
                                     .+.....++|+|.++.|.++.......+|.+..   ...+....        ....+.+++++|.
T Consensus       104 i~~~~~~~~~~~~~~~N~g~EGLA~d~~~~~L~va~E~~p~~i~~~~g~~~~~~l~i~~~~~~~~~~~~~d~S~l~~dp~  183 (255)
T 3qqz_A          104 VKILKKIKIPLQESPTNCGFEGLAYSRQDHTFWFFKEKNPIEVYKVNGLLSSNELHISKDKALQRQFTLDDVSGAEFNQQ  183 (255)
T ss_dssp             EEEEEEEECCCSSCCCSSCCEEEEEETTTTEEEEEEESSSEEEEEEESTTCSSCCEEEECHHHHHTCCSSCCCEEEEETT
T ss_pred             eeeeeeeccccccccccCCcceEEEeCCCCEEEEEECcCCceEEEEcccccCCceeeecchhhccccccCCceeEEEcCC
Confidence                           122246899999987666555544545554431   11111111        1235678999997


Q ss_pred             CCEEEEEc-CCCcEEEEeCCCC
Q psy10953        140 GDKFVSVG-EDKAVHMYSYKPE  160 (181)
Q Consensus       140 g~~l~~~~-~d~~v~i~~~~~~  160 (181)
                      ...++..| ..+.+..+|....
T Consensus       184 tg~lliLS~~s~~L~~~d~~g~  205 (255)
T 3qqz_A          184 KNTLLVLSHESRALQEVTLVGE  205 (255)
T ss_dssp             TTEEEEEETTTTEEEEECTTCC
T ss_pred             CCeEEEEECCCCeEEEEcCCCC
Confidence            66554444 5678888887644

>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1

Probab=97.97  E-value=0.00033  Score=57.94  Aligned_cols=142  Identities=15%  Similarity=0.181  Sum_probs=92.6

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc-eEEEEEECC--CCCEEEEeeC------CCcEEEEeCCCCCcccEE-
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-FTLSIAYST--DGHWIASGAL------DGIINIFDANTGHSSWVL-   91 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~--d~~~l~~~~~------d~~v~i~d~~~~~~~~v~-   91 (181)
                      .+..++.++.|+.|..+|.++|+.+-.+..... ....+.-+|  .+..++.+..      ++.++.+|+.++...+.. 
T Consensus       116 ~~~~v~v~~~dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~P~v~~~~v~vg~~~~~~~~~g~v~a~D~~tG~~~W~~~  195 (668)
T 1kv9_A          116 WGDKVYVGTLDGRLIALDAKTGKAIWSQQTTDPAKPYSITGAPRVVKGKVIIGNGGAEYGVRGFVSAYDADTGKLAWRFY  195 (668)
T ss_dssp             EBTEEEEECTTSEEEEEETTTCCEEEEEECSCTTSSCBCCSCCEEETTEEEECCBCTTTCCBCEEEEEETTTCCEEEEEE
T ss_pred             ECCEEEEEcCCCEEEEEECCCCCEeeeeccCCCCCcceecCCCEEECCEEEEeCCCCCcCCCCEEEEEECCCCcEEEEec
Confidence            355677888899999999999998866554210 000011111  1334444432      588999998766432211 


Q ss_pred             --------------------------------------EEEEcCCCCEEEEEeCCC-------------------cEEEE
Q psy10953         92 --------------------------------------STAFTRDGKFFISASADH-------------------TVRVW  114 (181)
Q Consensus        92 --------------------------------------~~~~s~~~~~l~~~~~d~-------------------~i~v~  114 (181)
                                                            .++++|+...+..++.++                   .|.-+
T Consensus       196 ~~~~~p~~~~~~~~~~~~~~~~~g~~~w~~~~gg~~w~~~a~d~~~~~vy~~~~~g~~w~~~~~~~~~gd~l~~~~v~Al  275 (668)
T 1kv9_A          196 TVPGDPALPYEHPELREAAKTWQGDQYWKLGGGGTVWDSMAYDPELDLLYVGTGNGSPWNREVRSPGGGDNLYLSSILAI  275 (668)
T ss_dssp             SSCCCTTSCCSSHHHHHHHTTCCSSCHHHHCEECCCCSCEEEETTTTEEEEECCCEESSCHHHHSTTCCCCTTTTEEEEE
T ss_pred             ccCCCCCccccccccccccccCCccceeeeCCCCccccceEEcCCCCEEEEeCCCCCccccCCCCCCCCCceeeeeEEEE
Confidence                                                  256777777777776655                   39999


Q ss_pred             ecCCCceeeeeecC----------CcEEEEEEccCCC---EEEEEcCCCcEEEEeCCCCeeE
Q psy10953        115 NFARRENMHTFKHA----------DQVWCVCVAPDGD---KFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       115 d~~~~~~~~~~~~~----------~~v~~~~~sp~g~---~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      |.++++....++..          .+.....+..+|+   .++.++.++.++++|..+|+.+
T Consensus       276 D~~tG~~~W~~~~~~~~~wd~~~~~~~~~~d~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~l  337 (668)
T 1kv9_A          276 RPDTGKLAWHYQVTPGDSWDFTATQQITLAELNIDGKPRKVLMQAPKNGFFYVLDRTNGKLI  337 (668)
T ss_dssp             CTTTCCEEEEEESSTTCCSCCCCCSCEEEEEEEETTEEEEEEEECCTTSEEEEEETTTCCEE
T ss_pred             cCCCCceeeEeecCCCccccccCCCCcEEEEeccCCcEEEEEEEECCCCEEEEEECCCCCEe
Confidence            99999988777521          2233333334675   6888889999999999998876

>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}

Probab=97.96  E-value=0.00017  Score=53.51  Aligned_cols=139  Identities=16%  Similarity=0.149  Sum_probs=88.4

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC--------
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH--------   86 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~--------   86 (181)
                      ..+...++|. ++.++.++.+..+|.. ++....+......+.++...+++...+..   +.+..+| .++.        
T Consensus       140 ~~~~~~~~g~-l~vgt~~~~l~~~d~~-g~~~~~~~~~~~~~~~~~~d~~g~l~v~t---~~l~~~d-~~g~~~~~~~~~  213 (330)
T 3hxj_A          140 ATPIVSEDGT-IYVGSNDNYLYAINPD-GTEKWRFKTNDAITSAASIGKDGTIYFGS---DKVYAIN-PDGTEKWNFYAG  213 (330)
T ss_dssp             SCCEECTTSC-EEEECTTSEEEEECTT-SCEEEEEECSSCCCSCCEECTTCCEEEES---SSEEEEC-TTSCEEEEECCS
T ss_pred             eeeEEcCCCE-EEEEcCCCEEEEECCC-CCEeEEEecCCCceeeeEEcCCCEEEEEe---CEEEEEC-CCCcEEEEEccC
Confidence            4455566666 6667778999999998 77766555544444456777788755443   7788888 4332        


Q ss_pred             cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCc-EEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953         87 SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus        87 ~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~-v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      ...+.++..+++|+..+ ++.++.+..+|. ++..+..+..... +..+.+.+++ .++.++.++.+..++. +++.+
T Consensus       214 ~~~~~~~~~~~~g~l~v-~t~~~gl~~~~~-~g~~~~~~~~~~~~~~~~~~~~~g-~l~v~t~~ggl~~~d~-~g~~~  287 (330)
T 3hxj_A          214 YWTVTRPAISEDGTIYV-TSLDGHLYAINP-DGTEKWRFKTGKRIESSPVIGNTD-TIYFGSYDGHLYAINP-DGTEK  287 (330)
T ss_dssp             SCCCSCCEECTTSCEEE-EETTTEEEEECT-TSCEEEEEECSSCCCSCCEECTTS-CEEEECTTCEEEEECT-TSCEE
T ss_pred             CcceeceEECCCCeEEE-EcCCCeEEEECC-CCCEeEEeeCCCCccccceEcCCC-eEEEecCCCCEEEECC-CCcEE
Confidence            12355667778877554 555778888874 4555555543222 3345555565 5666777888999985 45443

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.96  E-value=0.0028  Score=47.58  Aligned_cols=149  Identities=7%  Similarity=0.023  Sum_probs=93.4

Q ss_pred             EEEEEEcCCCC-EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee--CCCcEEEEeCCCCC----
Q psy10953         14 MWNVVFSPDDK-YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA--LDGIINIFDANTGH----   86 (181)
Q Consensus        14 ~~~~~~s~~g~-~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~--~d~~v~i~d~~~~~----   86 (181)
                      ...+++.+.+. +.++-...+.|.++++.......++.........++++|.+..|+...  ..+.|...+.....    
T Consensus        81 p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  160 (318)
T 3sov_A           81 PDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFII  160 (318)
T ss_dssp             CCEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEE
Confidence            35688887444 445555677899999875544344333333346889998766665554  35778888765321    


Q ss_pred             ----cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         87 ----SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                          ......++++|++. ++++=+..+.|..+|+.......... ......++++. .+..+++-...+.|..++..++
T Consensus       161 ~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~glav~-~~~lywtd~~~~~V~~~~~~~G  239 (318)
T 3sov_A          161 INSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLF-EDILYWTDWSTHSILACNKYTG  239 (318)
T ss_dssp             ECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSCCSCEEEEEEE-TTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCccEEEEeccCCEEEEEECCCCEEEEEcCCCCceEEEecCCCCCceEEEEe-CCEEEEEecCCCeEEEEECCCC
Confidence                23468899999655 44554557889999986433222222 23456678875 3455666666788999998666


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      +..
T Consensus       240 ~~~  242 (318)
T 3sov_A          240 EGL  242 (318)
T ss_dssp             CSC
T ss_pred             Cce
Confidence            543

>3v65_B Low-density lipoprotein receptor-related protein; laminin-G, beta-propeller, protein binding; 3.30A {Rattus norvegicus}

Probab=97.95  E-value=0.0023  Score=49.27  Aligned_cols=149  Identities=8%  Similarity=0.035  Sum_probs=93.2

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-C-CcEEEEeCCCCC----
Q psy10953         14 MWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-D-GIINIFDANTGH----   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d-~~v~i~d~~~~~----   86 (181)
                      ...+++++.+..| ++-...+.|.+.++.......++...-.....++++|++..|+.... . +.|..++.....    
T Consensus       161 p~glavd~~~g~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~  240 (386)
T 3v65_B          161 PGGLAVDWVHDKLYWTDSGTSRIEVANLDGAHRKVLLWQSLEKPRAIALHPMEGTIYWTDWGNTPRIEASSMDGSGRRII  240 (386)
T ss_dssp             CCCEEEETTTTEEEEEETTTTEEEECBTTSCSCEEEECSSCSCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEE
T ss_pred             ccEEEEEeCCCeEEEEcCCCCeEEEEeCCCCceEEeecCCCCCCcEEEEEcCCCeEEEeccCCCCEEEEEeCCCCCcEEE
Confidence            3568888755544 55555678888887755443444333234568899987766655443 3 678888775321    


Q ss_pred             ----cccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         87 ----SSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                          ......++++|++. ++++-+..+.|..+|+.......... ......++++ ..+..+++-...+.|..++..++
T Consensus       241 ~~~~~~~PnGlavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~P~giav-~~~~ly~td~~~~~V~~~~~~~G  319 (386)
T 3v65_B          241 ADTHLFWPNGLTIDYAGRRMYWVDAKHHVIERANLDGSHRKAVISQGLPHPFAITV-FEDSLYWTDWHTKSINSANKFTG  319 (386)
T ss_dssp             ECSSCSCEEEEEEEGGGTEEEEEETTTTEEEEECTTSCSCEEEECSSCSSEEEEEE-ETTEEEEEETTTTEEEEEETTTC
T ss_pred             EECCCCCeeeEEEeCCCCEEEEEECCCCEEEEEeCCCCeeEEEEECCCCCceEEEE-ECCEEEEeeCCCCeEEEEECCCC
Confidence                23468899998655 44555556789999986533222222 2345678888 45556666667788999885555


Q ss_pred             eeE
Q psy10953        161 EEV  163 (181)
Q Consensus       161 ~~~  163 (181)
                      ..+
T Consensus       320 ~~~  322 (386)
T 3v65_B          320 KNQ  322 (386)
T ss_dssp             CSC
T ss_pred             cce
Confidence            443

>2xe4_A Oligopeptidase B; hydrolase-inhibitor complex, hydrolase, protease inhibitor trypanosomes, CLAN SC; HET: FC0 RGL; 1.65A {Leishmania major}

Probab=97.95  E-value=0.00069  Score=56.73  Aligned_cols=140  Identities=11%  Similarity=0.157  Sum_probs=78.9

Q ss_pred             EEEEEcCCCCEEEEEeCC-----CcEEEEeCCCCcEE--EEEec-CCceEEEEEECCCCCEEEEee---CCCcEEEEeCC
Q psy10953         15 WNVVFSPDDKYVLSGSQS-----GKINLYGVETGKLE--QIFDT-RGKFTLSIAYSTDGHWIASGA---LDGIINIFDAN   83 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d-----~~i~~~d~~~~~~~--~~~~~-~~~~~~~~~~s~d~~~l~~~~---~d~~v~i~d~~   83 (181)
                      ..++|+|||+.|+....|     ..|..+++.+++..  .++.. ...+...+.|||||++|+...   ....++++|+.
T Consensus       224 ~~~~WspDg~~l~y~~~d~~~~~~~v~~~~lgt~~~~~~lv~~~~~~~~~~~~~~SpDg~~l~~~~~~~~~~~l~~~d~~  303 (751)
T 2xe4_A          224 GEIVWGPDHTSLFYVTKDETLRENKVWRHVMGKLQSEDVCLYEEHNPLFSAFMYKAADTNTLCIGSQSPETAEVHLLDLR  303 (751)
T ss_dssp             SCCEECSSTTEEEEEEECTTCCEEEEEEEETTSCGGGCEEEEECCCTTCEEEEEECTTSSEEEEEEECSSCEEEEEEESS
T ss_pred             eeEEEecCCCEEEEEEECCCCCCCEEEEEECCCCchhcEEEEecCCCceEEEEEECCCCCEEEEEecCCCCceEEEEECC
Confidence            468899999988877665     25888888776422  33332 233455789999999988654   24467888886


Q ss_pred             CCCcc------------cEEEEEEcCCCCE-EEEEeCC----CcEEEEecCCC-ceee-eeecCC--cEEEEEEccCCCE
Q psy10953         84 TGHSS------------WVLSTAFTRDGKF-FISASAD----HTVRVWNFARR-ENMH-TFKHAD--QVWCVCVAPDGDK  142 (181)
Q Consensus        84 ~~~~~------------~v~~~~~s~~~~~-l~~~~~d----~~i~v~d~~~~-~~~~-~~~~~~--~v~~~~~sp~g~~  142 (181)
                      ++...            ....+.|+. |+. ++....+    ..|..+|+.+. .... .+.+..  .+..+.+  .++.
T Consensus       304 ~~~~~~~~~~l~~~~~~~~~s~~~~~-g~~l~~~t~~~~a~~~~L~~~d~~~~~~~~~~li~~~~~~~l~~~~~--~~~~  380 (751)
T 2xe4_A          304 KGNAHNTLEIVRPREKGVRYDVQMHG-TSHLVILTNEGGAVNHKLLIAPRGQPSDWSHVLVDHSEDVFMESIAV--RSNY  380 (751)
T ss_dssp             SCTTCCCEEESSCCCTTCCEEEEEET-TTEEEEEECTTTCTTCEEEEEETTSTTCCCCEEECCCSSEEEEEEEE--CSSE
T ss_pred             CCCCCceeEEeecCCCCceEEEeeee-CCEEEEEeCCCCCCCcEEEEEcCCCcccceeeEECCCCCcEEEEEEE--ECCE
Confidence            54211            112222222 554 4444443    35777777642 2122 233333  2344444  4555


Q ss_pred             E-EEEcCCCc--EEEEeC
Q psy10953        143 F-VSVGEDKA--VHMYSY  157 (181)
Q Consensus       143 l-~~~~~d~~--v~i~~~  157 (181)
                      | ++...++.  +.++++
T Consensus       381 lv~~~~~~g~~~l~~~dl  398 (751)
T 2xe4_A          381 LVVAGRRAGLTRIWTMMA  398 (751)
T ss_dssp             EEEEEEETTEEEEEEEEC
T ss_pred             EEEEEEeCCEEEEEEEec
Confidence            5 44455664  455554

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=97.94  E-value=0.0034  Score=47.95  Aligned_cols=142  Identities=14%  Similarity=0.158  Sum_probs=85.7

Q ss_pred             EEEEEcCCCCEEEEEe------------CCCcEEEEeCCC--CcEEEEEecCC-------ceEEEEEECC--CCC--EEE
Q psy10953         15 WNVVFSPDDKYVLSGS------------QSGKINLYGVET--GKLEQIFDTRG-------KFTLSIAYST--DGH--WIA   69 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~------------~d~~i~~~d~~~--~~~~~~~~~~~-------~~~~~~~~s~--d~~--~l~   69 (181)
                      =++++.|+|..+.+++            .+|.|.++|..+  .+... +...+       -....+.+.+  ++.  .++
T Consensus        53 EDi~~~~~G~~~~s~~~~~pg~~~~~~~~~G~I~~~d~~~~~~~~~~-l~~~g~~~~~~~f~PhGi~~~~d~dg~~~L~V  131 (355)
T 3sre_A           53 EDLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSE-LEIIGNTLDISSFNPHGISTFIDDDNTVYLLV  131 (355)
T ss_dssp             CEEEECTTSEEEEEECCC-----------CCEEEEEETTSSSCCEEE-CEEECSSCCGGGCCEEEEEEEECTTCCEEEEE
T ss_pred             ceeEEcCCCeEEEEeccccCCCcccCCCCCCeEEEEecCCCCCceEE-EEccCCCCCcCceeeeeeEEEECCCCcEEEEE
Confidence            3566788876655542            689999999873  34332 22111       1234566544  454  344


Q ss_pred             EeeC--CCcEEEEeCCCC-------------CcccEEEEEEcCCCCEEEEEeC-----------------CCcEEEEecC
Q psy10953         70 SGAL--DGIINIFDANTG-------------HSSWVLSTAFTRDGKFFISASA-----------------DHTVRVWNFA  117 (181)
Q Consensus        70 ~~~~--d~~v~i~d~~~~-------------~~~~v~~~~~s~~~~~l~~~~~-----------------d~~i~v~d~~  117 (181)
                      +-..  +..+-+|+....             .-...+++.+.++|+++++...                 .+.++-+|..
T Consensus       132 vnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~~~e~~~~~~~g~vyr~d~~  211 (355)
T 3sre_A          132 VNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPN  211 (355)
T ss_dssp             EECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHHHHHHHTTCCCEEEEEECTT
T ss_pred             EECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccccchhhccCCccEEEEEECC
Confidence            4333  456667665321             1235788999999998887651                 2456556553


Q ss_pred             CCceeeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCC
Q psy10953        118 RRENMHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKP  159 (181)
Q Consensus       118 ~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~  159 (181)
                        +.......-...++++||||++.++.+. ..+.|..|++..
T Consensus       212 --~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~  252 (355)
T 3sre_A          212 --DVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHA  252 (355)
T ss_dssp             --CCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECT
T ss_pred             --eEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECC
Confidence              2222222334578999999998876665 467899999864

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=97.93  E-value=0.0044  Score=48.91  Aligned_cols=104  Identities=18%  Similarity=0.257  Sum_probs=62.0

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC--------CceEEEEEECCC---CCEEEEee
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR--------GKFTLSIAYSTD---GHWIASGA   72 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~s~d---~~~l~~~~   72 (181)
                      +..+..+....+.++|.|+|+++++--..+.|++++..+++........        ..-...++|+||   +.+|....
T Consensus        19 ~~~~a~~l~~P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~   98 (454)
T 1cru_A           19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISG   98 (454)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEE
T ss_pred             EEEEECCCCCceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEE
Confidence            4455555667799999999997766544457888876656554332211        122458999995   44444332


Q ss_pred             -C------------CCcEEEEeCCC-----------------CCcccEEEEEEcCCCCEEEEEeC
Q psy10953         73 -L------------DGIINIFDANT-----------------GHSSWVLSTAFTRDGKFFISASA  107 (181)
Q Consensus        73 -~------------d~~v~i~d~~~-----------------~~~~~v~~~~~s~~~~~l~~~~~  107 (181)
                       .            ...|.-++...                 ........++|.|+|+++++.+.
T Consensus        99 s~~~~~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A           99 TFKNPKSTDKELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             EEECTTC--CCSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             eccccCCCccccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence             1            12344443211                 11123577899999998777553

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=97.92  E-value=0.00096  Score=50.91  Aligned_cols=139  Identities=13%  Similarity=0.168  Sum_probs=78.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-----cCCceEEEEEECCC---CCEEEEe-eC-
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-----TRGKFTLSIAYSTD---GHWIASG-AL-   73 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~s~d---~~~l~~~-~~-   73 (181)
                      +..+.......+.++|.|||++++ +..++.|++++ .+++ .....     ........++++|+   +..|+.. .. 
T Consensus        21 ~~~va~~l~~P~~ia~~pdG~l~V-~e~~g~I~~~d-~~G~-~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lyv~~~~~   97 (354)
T 3a9g_A           21 ISEVASDLEVPWSIAPLGGGRYLV-TERPGRLVLIS-PSGK-KLVASFDVANVGEAGLLGLALHPEFPKKSWVYLYASYF   97 (354)
T ss_dssp             EEEEECSCSCEEEEEEEETTEEEE-EETTTEEEEEC-SSCE-EEEEECCCCCSTTCSEEEEEECTTTTTSCEEEEEEEEE
T ss_pred             EEEEeCCCCCCeEEEEcCCCeEEE-EeCCCEEEEEe-CCCc-eEeeccceeecCCCceeeEEeCCCCCcCCEEEEEEecc
Confidence            344555555679999999998554 45669999997 4454 22211     11223568999998   4444433 21 


Q ss_pred             --C----CcEEEEeCCCC--C---------------cccEEEEEEcCCCCEEEEEeCC-------------CcEEEEecC
Q psy10953         74 --D----GIINIFDANTG--H---------------SSWVLSTAFTRDGKFFISASAD-------------HTVRVWNFA  117 (181)
Q Consensus        74 --d----~~v~i~d~~~~--~---------------~~~v~~~~~s~~~~~l~~~~~d-------------~~i~v~d~~  117 (181)
                        +    +.|..++....  .               ......++|.|+|+++++.+..             +.|.-++..
T Consensus        98 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~~~~~~h~~~~l~~~pDG~Lyvt~G~~~~~~~~~d~~~~~G~I~ri~~d  177 (354)
T 3a9g_A           98 AEGGHIRNRVIRGRLDGSTFKLKEVKTLIDGIPGAYIHNGGRIRFGPDGMLYITTGDAADPRLAQDLSSLAGKILRVDEE  177 (354)
T ss_dssp             CGGGCEEEEEEEEEECSSSCCEEEEEEEEEEEECCSSCCCCCEEECTTSCEEEECCCTTCGGGGTCTTCCSSEEEEECTT
T ss_pred             CCCCCcceEEEEEEECCCCcCcCccEEEEEcCCCCCCcCCceEEECCCCcEEEEECCCCCCccccCCCCCCeEEEEEcCC
Confidence              2    45666654322  0               0112457899999987775432             345555543


Q ss_pred             CC---------ceeeeeecCCcEEEEEEcc-CCCEEEEE
Q psy10953        118 RR---------ENMHTFKHADQVWCVCVAP-DGDKFVSV  146 (181)
Q Consensus       118 ~~---------~~~~~~~~~~~v~~~~~sp-~g~~l~~~  146 (181)
                      ..         ..+....+. ..+.++|+| +|+.+++-
T Consensus       178 G~~p~~npf~~~~i~a~G~r-np~Gla~d~~~g~l~v~d  215 (354)
T 3a9g_A          178 GRPPADNPFPNSPIWSYGHR-NPQGIDWHRASGVMVATE  215 (354)
T ss_dssp             SCCCTTSSSTTCCEEEECCS-CCCEEEECTTTCCEEEEE
T ss_pred             CCCCCCCCCCCCcEEEEccC-CcceEEEeCCCCCEEEEe
Confidence            21         112222222 356899999 56655543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.91  E-value=0.0035  Score=52.87  Aligned_cols=155  Identities=6%  Similarity=-0.040  Sum_probs=94.6

Q ss_pred             eeeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCC----cEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCC
Q psy10953         11 PVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETG----KLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANT   84 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~----~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~   84 (181)
                      ......++|++.+..| ++-...+.|+.+++...    ....++...-.....+++++.++.|+. -...+.|.+.++..
T Consensus       423 ~~~~~gl~~d~~~~~lY~sD~~~~~I~~~~l~g~~~~~~~~~vi~~~l~~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG  502 (791)
T 3m0c_C          423 LRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKG  502 (791)
T ss_dssp             CSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             CCceEEEeecccCCeeEEeeccceeEEEEeccCCCCCcceeEEEecCCCCcceeeeeecCCcEEEEecCCCeEEEEeCCC
Confidence            3445788898855544 45555678888888653    223333322222347888877765554 45577888888864


Q ss_pred             CC--------cccEEEEEEcCCCCEEEEEe-CC-CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcE
Q psy10953         85 GH--------SSWVLSTAFTRDGKFFISAS-AD-HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAV  152 (181)
Q Consensus        85 ~~--------~~~v~~~~~s~~~~~l~~~~-~d-~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v  152 (181)
                      ..        ......++++|.+..|.... .. +.|...++........+. .-....+|++++.+++|+.+. ..+.|
T Consensus       503 ~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I  582 (791)
T 3m0c_C          503 VKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSI  582 (791)
T ss_dssp             SSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTTEE
T ss_pred             CeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEEEEeCCCCCceEEEEecCCCeEEEEeCCCCcE
Confidence            32        23467899999755444433 33 678888886544332222 224688999998776665554 45689


Q ss_pred             EEEeCCCCeeEEE
Q psy10953        153 HMYSYKPEEEVEV  165 (181)
Q Consensus       153 ~i~~~~~~~~~~~  165 (181)
                      ..+++....+..+
T Consensus       583 ~~~d~dG~~~~~v  595 (791)
T 3m0c_C          583 SSIDVNGGNRKTI  595 (791)
T ss_dssp             EEEETTSCSCEEE
T ss_pred             EEEecCCCceEEE
Confidence            8888865544433

>3sov_A LRP-6, low-density lipoprotein receptor-related protein; beta propeller, protein binding-antagonist complex; HET: NAG FUC; 1.27A {Homo sapiens} PDB: 3soq_A* 3sob_B

Probab=97.88  E-value=0.0039  Score=46.76  Aligned_cols=150  Identities=8%  Similarity=-0.036  Sum_probs=92.4

Q ss_pred             eeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEE-EEEecCCceEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCC--
Q psy10953         12 VDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLE-QIFDTRGKFTLSIAYSTDGHWI-ASGALDGIINIFDANTGH--   86 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~-~~~~~~~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~~~~~--   86 (181)
                      .....++|++.++.| ++-...+.|..++..++... ..+...-.....+++.+.+..| ++-...+.|.++++....  
T Consensus        35 ~~~~~ld~d~~~~~lyw~D~~~~~I~r~~~~g~~~~~~~~~~~l~~p~glavd~~~g~ly~~d~~~~~I~~~~~dG~~~~  114 (318)
T 3sov_A           35 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  114 (318)
T ss_dssp             EEEEEEEEEGGGTEEEEEETTTTEEEEEETTSSSCCCEEEEECCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CccEEEEEEeCCCEEEEEECCCCcEEEEEccCCCceEEEEcCCCCCccEEEEEcCCCeEEEEECCCCEEEEEECCCCcEE
Confidence            345688898865544 55556778999988766422 2222211223467888755444 444556788888876432  


Q ss_pred             ------cccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcEEEEe
Q psy10953         87 ------SSWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAVHMYS  156 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~  156 (181)
                            ......++++|.+..+....  ..+.|..+++.......... .-...+.++++|+++.|+.+. ..+.|..++
T Consensus       115 ~l~~~~~~~P~giavdp~~g~ly~td~~~~~~I~r~~~dG~~~~~~~~~~l~~Pnglavd~~~~~lY~aD~~~~~I~~~d  194 (318)
T 3sov_A          115 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  194 (318)
T ss_dssp             EEECSSCSSEEEEEEEGGGTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCCCCccEEEEeCCCCEEEEEecCCCCEEEEEEcCCCCeEEEEECCCCCccEEEEeccCCEEEEEECCCCEEEEEc
Confidence                  23467889998655444444  25778888876433222221 223578999999776665554 567899999


Q ss_pred             CCCCe
Q psy10953        157 YKPEE  161 (181)
Q Consensus       157 ~~~~~  161 (181)
                      +....
T Consensus       195 ~dG~~  199 (318)
T 3sov_A          195 LDGTN  199 (318)
T ss_dssp             TTSCS
T ss_pred             CCCCc
Confidence            86543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=97.87  E-value=0.0031  Score=48.02  Aligned_cols=142  Identities=16%  Similarity=0.134  Sum_probs=83.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEECCC----CCEEEEe-
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD------TRGKFTLSIAYSTD----GHWIASG-   71 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~s~d----~~~l~~~-   71 (181)
                      ++..++.+....+.++|.|||+++++--..|.|++++..+++......      ....-...++++|+    +...++- 
T Consensus        23 ~~~~va~gL~~P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt  102 (347)
T 3das_A           23 VLRTVATGLNSPWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFT  102 (347)
T ss_dssp             EEEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEE
T ss_pred             eeEEeecCCCCceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEe
Confidence            345566667778999999999977776558999999876665432211      11233468999996    4333322 


Q ss_pred             -eCCCcEEEEeCCCC-----C---c------------ccEEEEEEcCCCCEEEEEeC-------------CCcEEEEecC
Q psy10953         72 -ALDGIINIFDANTG-----H---S------------SWVLSTAFTRDGKFFISASA-------------DHTVRVWNFA  117 (181)
Q Consensus        72 -~~d~~v~i~d~~~~-----~---~------------~~v~~~~~s~~~~~l~~~~~-------------d~~i~v~d~~  117 (181)
                       ..++.|.-|.+..+     .   .            .....+.|.|+|.++++.+.             .+.|.-++..
T Consensus       103 ~~~~~~v~R~~~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~Gd~~~~~~~qd~~~~~G~IlRi~~d  182 (347)
T 3das_A          103 SASDNRIVRMLYDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTGESGDTGLSQDRKSLGGKILRMTPD  182 (347)
T ss_dssp             CSSSEEEEEEEBCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECBCTTCGGGTTCTTCSTTCEEEECTT
T ss_pred             cCCCCEEEEEEeCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEECCCCCCccccCCCCCCCEEEEEeCC
Confidence             23445555544321     0   0            01234789999998887542             2455545543


Q ss_pred             CC---------ceeeeeecCCcEEEEEEccCCCEEEE
Q psy10953        118 RR---------ENMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus       118 ~~---------~~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                      ..         ..+....+. ..+.++|+|+|+.+++
T Consensus       183 G~ip~~nPf~~~~i~a~G~R-Np~Gla~dp~G~L~~~  218 (347)
T 3das_A          183 GEPAPGNPFPGSPVYSYGHR-NVQGLAWDDKQRLFAS  218 (347)
T ss_dssp             SSBCTTCSSTTCCEEEBCCS-BCCEEEECTTCCEEEE
T ss_pred             CCccCCCCCCCCeEEeeCCC-CcceEEECCCCCEEEE
Confidence            21         112222232 3557899998776554

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.86  E-value=0.0072  Score=50.71  Aligned_cols=146  Identities=13%  Similarity=0.166  Sum_probs=99.4

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec--------CCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT--------RGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~--------~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ..+.++...++|+ |..|+.++-|..|+..+++.......        ....+.++...++|+.|..|..++-+..+|..
T Consensus       357 ~~V~~i~~d~~g~-lWiGt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~  435 (795)
T 4a2l_A          357 NVVSCIVEDKDKN-LWIGTNDGGLNLYNPITQRFTSYTLQEDESARGIGSNNIKAVYVDEKKSLVYIGTHAGGLSILHRN  435 (795)
T ss_dssp             SSEEEEEECTTSC-EEEEESSSCEEEECTTTCCEEEECCC------CCSCSCEEEEEEETTTTEEEEEETTTEEEEEETT
T ss_pred             CeeEEEEECCCCC-EEEEECCCCeEEEcCCCCcEEEEecCCCCcccCCCCccEEEEEEcCCCCEEEEEeCcCceeEEeCC
Confidence            3478888888776 66677787899999888776544311        13456788888888845556666678888876


Q ss_pred             CCC------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-------cCCcEEEEEEccCCCEEE
Q psy10953         84 TGH------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-------HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        84 ~~~------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-------~~~~v~~~~~sp~g~~l~  144 (181)
                      ++.            ...|.++..+++|++.+...  +-+..||..+++......       ....|.++...++|+..+
T Consensus       436 ~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi  513 (795)
T 4a2l_A          436 SGQVENFNQRNSQLVNENVYAILPDGEGNLWLGTL--SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWI  513 (795)
T ss_dssp             TCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEES--SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEE
T ss_pred             CCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEec--CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEE
Confidence            431            24688888888898666544  458889987654322111       125688999999998766


Q ss_pred             EEcCCCcEEEEeCCCCee
Q psy10953        145 SVGEDKAVHMYSYKPEEE  162 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~  162 (181)
                      ...  +.+..|+..++..
T Consensus       514 gt~--~Gl~~~~~~~~~~  529 (795)
T 4a2l_A          514 GGE--EGLSVFKQEGLDI  529 (795)
T ss_dssp             EES--SCEEEEEEETTEE
T ss_pred             EeC--CceEEEeCCCCeE
Confidence            554  5688888765543

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=97.85  E-value=0.0045  Score=47.14  Aligned_cols=152  Identities=16%  Similarity=0.328  Sum_probs=96.2

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECC----CCCE--EE-EeeC---CCcEEEEeCC--CCC---
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST----DGHW--IA-SGAL---DGIINIFDAN--TGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~----d~~~--l~-~~~~---d~~v~i~d~~--~~~---   86 (181)
                      ...+++.....+-+.+||+ +|+.++.+.. +. ...+..-|    .|+.  ++ +...   ++++.+|++.  ++.   
T Consensus        39 ~~s~ii~t~k~~gL~Vydl-~G~~l~~~~~-g~-~nnVD~r~~~~l~g~~~dla~as~R~~~~n~l~vf~iDp~~~~l~~  115 (355)
T 3amr_A           39 QNSKLITTNKKSGLVVYSL-DGKMLHSYNT-GK-LNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQS  115 (355)
T ss_dssp             GGCEEEEEETTTEEEEEET-TSCEEEEECC-SC-EEEEEEEEEEEETTEEEEEEEEEECSTTCCEEEEEEECTTTCCEEE
T ss_pred             CccEEEEEcCCCCEEEEcC-CCcEEEEccC-CC-cccEEEecccccCCceEeEEEEeCCCCCCCeEEEEEECCCCCceee
Confidence            4556777777889999999 7888877753 22 22333322    3333  33 3333   5789999652  211   


Q ss_pred             ----------c-ccEEEEEE--cCC-CC-EEEEEeCCCcEEEEecC-------CCceeeeeecCCcEEEEEEccCCCEEE
Q psy10953         87 ----------S-SWVLSTAF--TRD-GK-FFISASADHTVRVWNFA-------RRENMHTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        87 ----------~-~~v~~~~~--s~~-~~-~l~~~~~d~~i~v~d~~-------~~~~~~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                                . ..+..+++  +|. ++ +++....++.+..|++.       +.+.+.++.....+..++..+...+|+
T Consensus       116 i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~lgsq~EgcvvDd~~g~Ly  195 (355)
T 3amr_A          116 MTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFKMNSQTEGMAADDEYGRLY  195 (355)
T ss_dssp             CSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEECSSCEEEEEEETTTTEEE
T ss_pred             ccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEecCCCCcceEEEcCCCCeEE
Confidence                      0 23445666  674 54 67777788999999883       235567777778899999999999999


Q ss_pred             EEcCCCcEEEEeCCC-----CeeEEEcCCCCcchhhh
Q psy10953        145 SVGEDKAVHMYSYKP-----EEEVEVNGGGGEEEEEE  176 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~-----~~~~~~~~~~~~~~~~~  176 (181)
                      .+-++..|-.|+..+     .+.+....+++-..+.|
T Consensus       196 v~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvE  232 (355)
T 3amr_A          196 IAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIE  232 (355)
T ss_dssp             EEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEE
T ss_pred             EecccceEEEEeCCcCCCCCceEEEEecCCccccCcc
Confidence            999986655555432     34555554443333343

>3kya_A Putative phosphatase; structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PS hydrolase; HET: MSE; 1.77A {Bacteroides thetaiotaomicron}

Probab=97.82  E-value=0.0013  Score=52.46  Aligned_cols=145  Identities=12%  Similarity=0.094  Sum_probs=90.7

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCcEEEEeCC-------CCcE-----------E-EEEec-CCceEEEEEECCCCCEEEEe-
Q psy10953         14 MWNVVFSPDDKYV-LSGSQSGKINLYGVE-------TGKL-----------E-QIFDT-RGKFTLSIAYSTDGHWIASG-   71 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~~d~~i~~~d~~-------~~~~-----------~-~~~~~-~~~~~~~~~~s~d~~~l~~~-   71 (181)
                      ...++++|++..| ++-..++.|..+|..       ++..           . .++.. .......++|+|+|+.|+.+ 
T Consensus       249 p~giavdp~~g~LYvtd~~~g~V~r~d~~~~~~~~~tg~~~tp~~~~~~g~~~~l~~~~~~~~p~~ia~~p~G~~lYvaD  328 (496)
T 3kya_A          249 CNGATIHPINGELYFNSYEKGQVFRLDLVDYFKTIKNGGSWDPIVKNNPNTFKQLFTIADPSWEFQIFIHPTGKYAYFGV  328 (496)
T ss_dssp             CCCEEECTTTCCEEEEETTTTEEEEECHHHHHHHHHTTCCCCCBGGGCTTTEEEEEECSSSSCCEEEEECTTSSEEEEEE
T ss_pred             ceEEEEcCCCCeEEEEECCCCEEEEEecccccccccCceeecccccccccccceeEecCCCCCceEEEEcCCCCEEEEEe
Confidence            4678899955554 555567789999987       5554           1 22322 22334689999999965554 


Q ss_pred             eCCCcEEEEeC--CCC-------------Cc------------ccEE-EEEEc-------CCCCEEEEEeCCCcEEEEec
Q psy10953         72 ALDGIINIFDA--NTG-------------HS------------SWVL-STAFT-------RDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        72 ~~d~~v~i~d~--~~~-------------~~------------~~v~-~~~~s-------~~~~~l~~~~~d~~i~v~d~  116 (181)
                      .....|+.++.  ..+             ..            .... .+...       ++|.++++=..++.|+.++.
T Consensus       329 ~~~h~I~kid~dg~~~~~~~~~~~aG~~g~~G~~DG~~~~a~f~~P~~gv~vd~~~~~~~~~g~lyVaD~~N~rIr~i~~  408 (496)
T 3kya_A          329 INNHYFMRSDYDEIKKEFITPYNFVGGYKQSGYRDDVGTEARMNNPCQGVFVKNPDYTGEEEYDFYFVDRLNFCVRKVTP  408 (496)
T ss_dssp             TTTTEEEEEEEETTTTEECCCEEEEEBTTBCCCBCCBGGGCBCSSEEEEEEEECTTCCSSCCEEEEEEEGGGTEEEEECT
T ss_pred             CCCCEEEEEecCCCcceecccEEecCCCCCCcccCCcccccccCCCeEEEEEccccccccCCCeEEEEECCCCEEEEEeC
Confidence            45667777543  211             00            1234 44454       56777777777888999984


Q ss_pred             CCCceeeeee-c------------------------CCcEEEEEEccC-CCEEEEEcCCCcEEEEeCCCC
Q psy10953        117 ARRENMHTFK-H------------------------ADQVWCVCVAPD-GDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus       117 ~~~~~~~~~~-~------------------------~~~v~~~~~sp~-g~~l~~~~~d~~v~i~~~~~~  160 (181)
                       ++. +.++. .                        -....+++++++ |+.+++=..+++|+.+++...
T Consensus       409 -~G~-v~TiaG~g~~~~~~~~~~~G~~dG~~~~~a~f~~P~gIavd~~~g~lyVaD~~N~rIrki~~~~~  476 (496)
T 3kya_A          409 -EGI-VSTYAGRGASTSLADGNQWGTDDGDLREVARFRDVSGLVYDDVKEMFYVHDQVGHTIRTISMEQE  476 (496)
T ss_dssp             -TCB-EEEEEESCTTHHHHHSCSCCCCCEETTTTCCCSSEEEEEEETTTTEEEEEETTTTEEEEEEECCC
T ss_pred             -CCC-EEEEecccccccccCccccccCCCCchhhhhcCCCcEEEEECCCCEEEEEeCCCCEEEEEECCCC
Confidence             332 22221 0                        124778999997 766666667789999988643

>3p5b_L Low density lipoprotein receptor variant; B-propellor, convertase, hydrolase-lipid binding P complex; 3.30A {Homo sapiens} PDB: 3p5c_L

Probab=97.80  E-value=0.0069  Score=46.87  Aligned_cols=152  Identities=10%  Similarity=0.031  Sum_probs=97.2

Q ss_pred             eeEEEEEEcCC-CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCC--
Q psy10953         12 VDMWNVVFSPD-DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDANTGH--   86 (181)
Q Consensus        12 ~~~~~~~~s~~-g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~~~~--   86 (181)
                      .....+++.+. +++.++-...+.|.+.+++......++.........++++|.+..|+....  .+.|...++....  
T Consensus       159 ~~p~glavD~~~~~lY~~d~~~~~I~~~~~~g~~~~~l~~~~~~~P~~iavdp~~g~ly~td~~~~~~I~~~~~dG~~~~  238 (400)
T 3p5b_L          159 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  238 (400)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEECTTTCSEEEEEECSSCCEEEEEEETTTTEEEEEECSSSCCEEEEETTSCSCE
T ss_pred             CCcccEEEEecCCceEEEECCCCeEEEEeCCCCceEEEEeCCCCCcceEEEecccCeEEEEeCCCCCEEEEEeCCCCccE
Confidence            34578899874 455556566788999998866655555433344568999997666655442  4678888875322  


Q ss_pred             ------cccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         87 ------SSWVLSTAFTRDGKFFISA-SADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                            ......++++|++..|..+ ...+.|..+|+..........   ......++++. .+..+++-...+.|..++
T Consensus       239 ~~~~~~l~~P~glavd~~~~~lY~aD~~~~~I~~~d~dG~~~~~~~~~~~~l~~P~gl~v~-~~~lywtd~~~~~V~~~~  317 (400)
T 3p5b_L          239 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  317 (400)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCCCEEEEECSSTTSSEEEEEEE-TTEEEEEESSSCSEEEEE
T ss_pred             EEEECCCCceEEEEEEeCCCEEEEEECCCCEEEEEeCCCCccEEEEeCCCCCCCCEEEEEe-CCEEEEecCCCCeEEEEE
Confidence                  2457889999876655444 456789999986543222222   12345677773 345566666678899998


Q ss_pred             CCCCeeEE
Q psy10953        157 YKPEEEVE  164 (181)
Q Consensus       157 ~~~~~~~~  164 (181)
                      ..++..+.
T Consensus       318 ~~~G~~~~  325 (400)
T 3p5b_L          318 RLTGSDVN  325 (400)
T ss_dssp             SSSCCCCE
T ss_pred             cCCCCceE
Confidence            66664443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=97.77  E-value=0.0081  Score=46.92  Aligned_cols=135  Identities=15%  Similarity=0.176  Sum_probs=91.8

Q ss_pred             EEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---c-eEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--------
Q psy10953         18 VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---K-FTLSIAYSTDGHWIASGALDGIINIFDANTG--------   85 (181)
Q Consensus        18 ~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~-~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--------   85 (181)
                      ..+.+|..++.+- +..||+-++......+.+....   . .+..+..+|+|++||..+ +..|.+..+..+        
T Consensus        27 ~~~~n~t~i~~a~-~n~iR~~~i~~~~~Yk~L~~~~~i~f~~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~  104 (452)
T 3pbp_A           27 FSSQNGTRIVFIQ-DNIIRWYNVLTDSLYHSLNFSRHLVLDDTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVS  104 (452)
T ss_dssp             EEETTTTEEEEEE-TTEEEEEETTTCSSCEEEECTTTCCCCTTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHH
T ss_pred             EEEcCCCEEEEEE-CCEEEEEECCCCCcceEEecCcccccCceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccc
Confidence            3456777776664 5789988887444444444431   1 245789999999888765 446777766411        


Q ss_pred             ------------------CcccEEEEEEcCCC---CEEEEEeCCCcEEEEecCCCc-eeeeee----------cCCcEEE
Q psy10953         86 ------------------HSSWVLSTAFTRDG---KFFISASADHTVRVWNFARRE-NMHTFK----------HADQVWC  133 (181)
Q Consensus        86 ------------------~~~~v~~~~~s~~~---~~l~~~~~d~~i~v~d~~~~~-~~~~~~----------~~~~v~~  133 (181)
                                        ....|..+-|+|-+   ..|++-..|+.|++||+.... ....+.          ....+.+
T Consensus       105 ~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVLtsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S  184 (452)
T 3pbp_A          105 IQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVLKEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITD  184 (452)
T ss_dssp             HHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEEETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEE
T ss_pred             cccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEEecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEE
Confidence                              12358889999964   589999999999999997521 111221          1246889


Q ss_pred             EEEccCCCEEEEEc--CCCcEEE
Q psy10953        134 VCVAPDGDKFVSVG--EDKAVHM  154 (181)
Q Consensus       134 ~~~sp~g~~l~~~~--~d~~v~i  154 (181)
                      +||++++-.|+..+  .+|.|+-
T Consensus       185 ~~Fg~~~lTLYvl~~t~~GDIYA  207 (452)
T 3pbp_A          185 LEFSKDGLTLYCLNTTEGGDIFA  207 (452)
T ss_dssp             EEECTTSSCEEEEECTTSCEEEE
T ss_pred             EEEcCCCcEEEEEecCCCCCEEE
Confidence            99999888888855  6777764

>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*

Probab=97.76  E-value=0.013  Score=49.12  Aligned_cols=142  Identities=13%  Similarity=0.187  Sum_probs=97.7

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe----cCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD----TRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG--   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~----~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--   85 (181)
                      ..++++...++|+.|+.|+.++-+..+|.++++......    .....+.++...++|...+.. .+ -+..||..++  
T Consensus       406 ~~v~~i~~d~~g~~lWigt~~~Gl~~~d~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lwigt-~~-Gl~~~~~~~~~~  483 (795)
T 4a2l_A          406 NNIKAVYVDEKKSLVYIGTHAGGLSILHRNSGQVENFNQRNSQLVNENVYAILPDGEGNLWLGT-LS-ALVRFNPEQRSF  483 (795)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTEEEEEETTTCCEEEECTTTSCCSCSCEEEEEECSSSCEEEEE-SS-CEEEEETTTTEE
T ss_pred             ccEEEEEEcCCCCEEEEEeCcCceeEEeCCCCcEEEeecCCCCcCCCeeEEEEECCCCCEEEEe-cC-ceeEEeCCCCeE
Confidence            457888888888867778877789999998887655432    123456788888888855543 34 4777886542  


Q ss_pred             ------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--------cCCcEEEEEEccCCCEEEE
Q psy10953         86 ------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--------HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        86 ------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~  145 (181)
                                  ....|.++..+++|++.+...  +-+..||..++..  .+.        ....|.++..+++|+..++
T Consensus       484 ~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~--~Gl~~~~~~~~~~--~~~~~~~~~~l~~~~i~~i~~d~~g~lWig  559 (795)
T 4a2l_A          484 TTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE--EGLSVFKQEGLDI--QKASILPVSNVTKLFTNCIYEASNGIIWVG  559 (795)
T ss_dssp             EECCBCTTCCBCCCCCEEEEEECTTCCEEEEES--SCEEEEEEETTEE--EECCCSCSCGGGGSCEEEEEECTTSCEEEE
T ss_pred             EEccccccccccCCceEEEEEECCCCCEEEEeC--CceEEEeCCCCeE--EEecCCCCCCCCCCeeEEEEECCCCCEEEE
Confidence                        124688888999999776554  4588898876553  221        2346889999999886664


Q ss_pred             EcCCCcEEEEeCCCCe
Q psy10953        146 VGEDKAVHMYSYKPEE  161 (181)
Q Consensus       146 ~~~d~~v~i~~~~~~~  161 (181)
                      .. . .+..|+..++.
T Consensus       560 T~-~-Gl~~~d~~~~~  573 (795)
T 4a2l_A          560 TR-E-GFYCFNEKDKQ  573 (795)
T ss_dssp             ES-S-CEEEEETTTTE
T ss_pred             eC-C-CceeECCCCCc
Confidence            44 3 68888876654

>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*

Probab=97.74  E-value=0.00055  Score=55.59  Aligned_cols=127  Identities=16%  Similarity=0.192  Sum_probs=82.6

Q ss_pred             CCCC---EEEEEeCCCcEEEEeCCCCcEEEEEecCC-------------ceE--------------------------EE
Q psy10953         21 PDDK---YVLSGSQSGKINLYGVETGKLEQIFDTRG-------------KFT--------------------------LS   58 (181)
Q Consensus        21 ~~g~---~l~~~~~d~~i~~~d~~~~~~~~~~~~~~-------------~~~--------------------------~~   58 (181)
                      ++|+   .++.++.+|.+.++|.++++.+..+....             ..+                          ..
T Consensus       311 ~~G~~~~~v~~~~~~G~l~~lD~~tG~~~w~~~~~~~~~w~~~~d~~~g~p~~~~~~~~~~~~~~~~~~P~~~Gg~~w~~  390 (571)
T 2ad6_A          311 VNGKMTPLLSHIDRNGILYTLNRENGNLIVAEKVDPAVNVFKKVDLKTGTPVRDPEFATRMDHKGTNICPSAMGFHNQGV  390 (571)
T ss_dssp             ETTEEEEEEEEECTTSEEEEEETTTCCEEEEEESSTTCCSEEEECTTTCSEEECGGGCCCTTCCEEEESSCTTCSSCSCB
T ss_pred             cCCcEEEEEEEeCCCcEEEEEECCCCCEEeeecccCCccccccccccCCceecccccCCCCCCCceEECCCCccccCCCC
Confidence            4674   56778889999999999999875544221             111                          13


Q ss_pred             EEECCCCCEEEEee-------------------------------------CCCcEEEEeCCCCCcccEEEE-------E
Q psy10953         59 IAYSTDGHWIASGA-------------------------------------LDGIINIFDANTGHSSWVLST-------A   94 (181)
Q Consensus        59 ~~~s~d~~~l~~~~-------------------------------------~d~~v~i~d~~~~~~~~v~~~-------~   94 (181)
                      ++++|+..+++...                                     .++.+..||+.+++..+-...       .
T Consensus       391 ~a~dp~~g~~yv~~~~~~~~~~~~~~~~~~g~~~~g~~~~~~~~~~~~~~~~~g~l~a~D~~tG~~~W~~~~~~~~~~~~  470 (571)
T 2ad6_A          391 DSYDPESRTLYAGLNHICMDWEPFMLPYRAGQFFVGATLAMYPGPNGPTKKEMGQIRAFDLTTGKAKWTKWEKFAAWGGT  470 (571)
T ss_dssp             CEEETTTTEEEEEEECEEEEEEECCCCCCTTSCCCCEEEEEEECTTSTTSCCCEEEEEECTTTCCEEEEEEESSCCCSBC
T ss_pred             ceECCCCCEEEEEchhccccccccccccccCCccccccceeccCccccCCCCCCeEEEEECCCCCEEEEecCCCCcccee
Confidence            56778777666543                                     347888899887754332221       1


Q ss_pred             EcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEE--EEEEccCCCEEEEEc
Q psy10953         95 FTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVW--CVCVAPDGDKFVSVG  147 (181)
Q Consensus        95 ~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~--~~~~sp~g~~l~~~~  147 (181)
                      +...+..++.++.|+.++.+|.++++.+.++.....+.  -+.+..+|+.++...
T Consensus       471 ~~t~gg~v~~g~~dg~l~a~D~~tG~~lw~~~~~~~~~~~p~~~~~~G~~yv~~~  525 (571)
T 2ad6_A          471 LYTKGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQYIGSM  525 (571)
T ss_dssp             EEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEEEEE
T ss_pred             EEECCCEEEEEcCCCeEEEEECCCCCEEEEEeCCCCcEeeeEEEEECCEEEEEEE
Confidence            22235666778899999999999999998886443332  133456777655433

>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}

Probab=97.73  E-value=0.0078  Score=45.45  Aligned_cols=151  Identities=11%  Similarity=0.051  Sum_probs=95.4

Q ss_pred             eEEEEEE---cCCCCEEEEEe-------------CCCcEEEEeCC---CCcEEEEEecC----C---------ceEEEEE
Q psy10953         13 DMWNVVF---SPDDKYVLSGS-------------QSGKINLYGVE---TGKLEQIFDTR----G---------KFTLSIA   60 (181)
Q Consensus        13 ~~~~~~~---s~~g~~l~~~~-------------~d~~i~~~d~~---~~~~~~~~~~~----~---------~~~~~~~   60 (181)
                      .++.+.|   .|+|+++++..             .+..+..||+.   +++........    +         .....+.
T Consensus        64 ~~sGl~~~~~D~~grL~vv~~~~~af~~~g~~~~g~~~v~~~Dl~~~~tg~~~~~~dL~~~~~~~~~~~g~~~~~~nDva  143 (334)
T 2p9w_A           64 QMSGLSLLTHDNSKRLFAVMKNAKSFNFADQSSHGASSFHSFNLPLSENSKPVWSVNFEKVQDEFEKKAGKRPFGVVQSA  143 (334)
T ss_dssp             EEEEEEESSSSSCCEEEEEEEETTTTCTTSCCSSSCCEEEEEESSCCTTCCCSEEEESHHHHHHHHHHHSSCCEEEEEEE
T ss_pred             eeeEEEEeccCCCCcEEEEEcccccccccccccCCCCEEEEEcCCcCCCCCEEEEecCccccccccccccccccCCceeE
Confidence            4689999   68877777543             25779999999   78776555421    1         1245899


Q ss_pred             ECCCCCEEEEeeCC-CcEEEEeCCCCC-------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCce--eee
Q psy10953         61 YSTDGHWIASGALD-GIINIFDANTGH-------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--MHT  124 (181)
Q Consensus        61 ~s~d~~~l~~~~~d-~~v~i~d~~~~~-------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~--~~~  124 (181)
                      ..++|+..++++.- +.|...+.....             ....+.++++|+|+.|+.....+.+..+|+.....  +..
T Consensus       144 vD~~GnaYVt~s~~~~~I~rV~pdG~~~~~~~~~~~~~~~~~G~nGIv~~pdg~~Liv~~~~g~L~~fD~~~pv~~~v~~  223 (334)
T 2p9w_A          144 QDRDGNSYVAFALGMPAIARVSADGKTVSTFAWESGNGGQRPGYSGITFDPHSNKLIAFGGPRALTAFDVSKPYAWPEPV  223 (334)
T ss_dssp             ECTTSCEEEEEEESSCEEEEECTTSCCEEEEEECCCCSSSCCSCSEEEEETTTTEEEEESSSSSEEEEECSSSSCCCEEC
T ss_pred             ECCCCCEEEeCCCCCCeEEEEeCCCCEEeeeeecCCCcccccCcceEEEeCCCCEEEEEcCCCeEEEEcCCCCcceeecc
Confidence            99999988887777 666666554221             11134789999999888777799999999875432  211


Q ss_pred             e--e---cCCcEEE-EEEccCCCEE-EEEcCCCcEEEEeCCCCeeE
Q psy10953        125 F--K---HADQVWC-VCVAPDGDKF-VSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       125 ~--~---~~~~v~~-~~~sp~g~~l-~~~~~d~~v~i~~~~~~~~~  163 (181)
                      -  .   .-...-. +..-.+|+.+ ++.+..+.+.+.+.......
T Consensus       224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~~~~~~~l~S~DgW~sa  269 (334)
T 2p9w_A          224 KINGDFGTLSGTEKIVTVPVGNESVLVGARAPYAISFRSWDNWKSA  269 (334)
T ss_dssp             EESSCCCCCTTEEEEEEEEETTEEEEEEEETTEEEEEECSSTTSEE
T ss_pred             cccCCcccccCcccccccccCCEEEEEEcCCCCEEEEECCCCccee
Confidence            1  0   1112233 3333467774 44444556666665544433

>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1

Probab=97.71  E-value=0.0011  Score=54.01  Aligned_cols=72  Identities=13%  Similarity=0.391  Sum_probs=48.9

Q ss_pred             CCcEEEEeCCCCCcccEEEE-------EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE--EEEccCCCEEE
Q psy10953         74 DGIINIFDANTGHSSWVLST-------AFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPDGDKFV  144 (181)
Q Consensus        74 d~~v~i~d~~~~~~~~v~~~-------~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~--~~~sp~g~~l~  144 (181)
                      ++.+.-||+.+++..+-...       .+...+.+++.++.|+.++.||.++++.+.++.....+.+  +.+..+|+.++
T Consensus       465 ~G~l~A~D~~tG~~~W~~~~~~~~~~g~~~tagglvf~g~~dg~l~A~D~~tG~~lW~~~~~~g~~a~P~~y~~~G~qYv  544 (582)
T 1flg_A          465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKELWKFQTGSGIVSPPITWEQDGEQYL  544 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEEE
T ss_pred             cceEEEEECCCCCEEEEecCCCCCcccceEeCCCEEEEECCCCcEEEEECCCCCEEEEecCCCCcccCceEEEECCEEEE
Confidence            57788889887754332211       1112356777899999999999999999988875544432  45567887554


Q ss_pred             E
Q psy10953        145 S  145 (181)
Q Consensus       145 ~  145 (181)
                      +
T Consensus       545 ~  545 (582)
T 1flg_A          545 G  545 (582)
T ss_dssp             E
T ss_pred             E
Confidence            4

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=97.70  E-value=0.0021  Score=45.78  Aligned_cols=133  Identities=11%  Similarity=0.006  Sum_probs=80.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec------C--CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT------R--GKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~------~--~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      .+.+++|+|+|.+.++  .++.+.-.+..+.+....+..      .  ..+ ..+.|.|+|.+.++  .||.++-++..+
T Consensus        42 ~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~t~IG~~Gw~~F-~a~~fD~~G~LYav--~dG~iyr~~pP~  116 (236)
T 1tl2_A           42 NFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRAKKIGNGGWNQF-QFLFFDPNGYLYAV--SKDKLYKASPPQ  116 (236)
T ss_dssp             TCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHCEEEECSCGGGC-SEEEECTTSCEEEE--ETTEEEEESCCC
T ss_pred             cceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccccEecccccccc-eEEEECCCCCEEEe--CCCEEEEeCCCc
Confidence            3458999999997666  677766666544322111111      1  112 36889999987666  679998887632


Q ss_pred             C-Cc--------------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc------eeeee--ecCCcEEEEEEccCCC
Q psy10953         85 G-HS--------------SWVLSTAFTRDGKFFISASADHTVRVWNFARRE------NMHTF--KHADQVWCVCVAPDGD  141 (181)
Q Consensus        85 ~-~~--------------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~------~~~~~--~~~~~v~~~~~sp~g~  141 (181)
                      . ..              ..+..+.++|+|.+.+..  |+.++-.......      ....+  ........+.|.|+|.
T Consensus       117 ~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~lyr~~~P~~~~~~wl~~~~~~g~~g~~~yr~l~f~~~G~  194 (236)
T 1tl2_A          117 SDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQFYKALPPVSNQDNWLARATKIGQGGWDTFKFLFFSSVGT  194 (236)
T ss_dssp             STTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTEEEEECCCSSTTCCHHHHCEEEESSSGGGEEEEEECTTSC
T ss_pred             CCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCcEEecCCCCCCCcccccccceeccCCcceEEEEEECCCCc
Confidence            1 10              246889999999987766  7776544322111      00111  1122455577999998


Q ss_pred             EEEEEcCCCcEEE
Q psy10953        142 KFVSVGEDKAVHM  154 (181)
Q Consensus       142 ~l~~~~~d~~v~i  154 (181)
                      .+++.  ++.++.
T Consensus       195 l~~v~--~g~~Y~  205 (236)
T 1tl2_A          195 LFGVQ--GGKFYE  205 (236)
T ss_dssp             EEEEE--TTEEEE
T ss_pred             EEEEe--CCeEEe
Confidence            77766  664443

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=97.69  E-value=0.0016  Score=49.58  Aligned_cols=140  Identities=11%  Similarity=0.153  Sum_probs=77.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-------cCCceEEEEEECCC---CCEEEEe-e
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-------TRGKFTLSIAYSTD---GHWIASG-A   72 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-------~~~~~~~~~~~s~d---~~~l~~~-~   72 (181)
                      +..+.......+.++|.|+|++++.+...+.|++++.. ++....+.       ........++++|+   +..|... .
T Consensus        10 ~~~va~~l~~P~~i~~~pdG~~l~V~e~~G~i~~~~~~-g~~~~~~~~~~~v~~~g~~g~~gia~~pdf~~~g~lYv~~~   88 (353)
T 2g8s_A           10 VEVLQDKLDHPWALAFLPDNHGMLITLRGGELRHWQAG-KGLSAPLSGVPDVWAHGQGGLLDVVLAPDFAQSRRIWLSYS   88 (353)
T ss_dssp             EEEEEEEESSEEEEEECSTTCCEEEEETTTEEEEEETT-TEECCCCBSCCCCCCSTTCSEEEEEECTTHHHHCEEEEEEE
T ss_pred             EEEEECCCCCcEEEEEcCCCCEEEEEeCCceEEEEeCC-CceeeEecCCcccccCCCCCceeEEECCCCCCCCEEEEEEe
Confidence            34444455567999999999944455567999999853 33221111       11122458999996   4444433 2


Q ss_pred             C-------CCcEEEEeCCCC-------------------CcccEEEEEEcCCCCEEEEEeCC-------------CcEEE
Q psy10953         73 L-------DGIINIFDANTG-------------------HSSWVLSTAFTRDGKFFISASAD-------------HTVRV  113 (181)
Q Consensus        73 ~-------d~~v~i~d~~~~-------------------~~~~v~~~~~s~~~~~l~~~~~d-------------~~i~v  113 (181)
                      .       ...|..++....                   .......++|.|+|.++++.+..             +.|.-
T Consensus        89 ~~~~~g~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~~~h~~~~l~~~pdG~Lyv~~Gd~~~~~~~q~~~~~~g~I~r  168 (353)
T 2g8s_A           89 EVGDDGKAGTAVGYGRLSDDLSKVTDFRTVFRQMPKLSTGNHFGGRLVFDGKGYLFIALGENNQRPTAQDLDKLQGKLVR  168 (353)
T ss_dssp             EECSSSCEEEEEEEEEECTTSSBEEEEEEEEECSSCCBSSSCCCCCEEECSSSEEEEEECCTTCGGGGGCTTSCTTEEEE
T ss_pred             CCCCCCCceeEEEEEEECCCCCCCCceEEEEEECCCCCCCcccCccEEECCCCcEEEEECCCCCCCccCCCCCCCeEEEE
Confidence            2       124444443211                   00113468999999877775432             45666


Q ss_pred             EecCCC--------------ceeeeeecCCcEEEEEEcc-CCCEEEE
Q psy10953        114 WNFARR--------------ENMHTFKHADQVWCVCVAP-DGDKFVS  145 (181)
Q Consensus       114 ~d~~~~--------------~~~~~~~~~~~v~~~~~sp-~g~~l~~  145 (181)
                      ++....              ..+....+ ...+.++|+| +|+.+++
T Consensus       169 i~~dG~~p~~npf~~~~~~~~~i~a~G~-rnp~gl~~d~~~g~l~~~  214 (353)
T 2g8s_A          169 LTDQGEIPDDNPFIKESGVRAEIWSYGI-RNPQGMAMNPWSNALWLN  214 (353)
T ss_dssp             EETTSCCCTTCTTTTSTTSCTTEEEECC-SEEEEEEEETTTTEEEEE
T ss_pred             ECCCCCCCCCCCCcCCCCCCccEEEEcC-cCccceEEECCCCCEEEE
Confidence            665432              11111122 2477899999 5554443

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.67  E-value=0.00035  Score=57.51  Aligned_cols=106  Identities=15%  Similarity=0.226  Sum_probs=71.2

Q ss_pred             EEEEEcC-CCCEEEEEeCCC-----------cEEEEeCCCCcEEEEEec---CCceEEEEEECCCCCEEEEeeC-CCcEE
Q psy10953         15 WNVVFSP-DDKYVLSGSQSG-----------KINLYGVETGKLEQIFDT---RGKFTLSIAYSTDGHWIASGAL-DGIIN   78 (181)
Q Consensus        15 ~~~~~s~-~g~~l~~~~~d~-----------~i~~~d~~~~~~~~~~~~---~~~~~~~~~~s~d~~~l~~~~~-d~~v~   78 (181)
                      ..+++.| +|++++.|+.+.           .+.+||..+++....-..   +..+..+.++..+++.++.|+. +..+.
T Consensus       189 ~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~  268 (656)
T 1k3i_A          189 AAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTS  268 (656)
T ss_dssp             SEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEE
T ss_pred             eeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceE
Confidence            3567777 888888887543           588999988875433221   2222234677889999999874 55899


Q ss_pred             EEeCCCCC---------cccEEEEEEcCCCCEEEEEe-CC-----CcEEEEecCCCc
Q psy10953         79 IFDANTGH---------SSWVLSTAFTRDGKFFISAS-AD-----HTVRVWNFARRE  120 (181)
Q Consensus        79 i~d~~~~~---------~~~v~~~~~s~~~~~l~~~~-~d-----~~i~v~d~~~~~  120 (181)
                      +||..+..         ...-..++..++|+.++.|+ .+     ..+.+||..+.+
T Consensus       269 ~yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          269 LYDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             EecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99975421         11112345667999999888 34     568999987654

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=97.63  E-value=0.019  Score=47.16  Aligned_cols=148  Identities=8%  Similarity=0.022  Sum_probs=96.1

Q ss_pred             eEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCC----
Q psy10953         13 DMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTGH----   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~----   86 (181)
                      ....++|++.++.|+ +-..++.|+.+++........+...-.....+++++.+..|+. -...+.|.+.++....    
T Consensus        38 ~~~~l~~d~~~~~lywtD~~~~~I~r~~~~g~~~~~v~~~g~~~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l  117 (628)
T 4a0p_A           38 EASALDFDVTDNRIYWTDISLKTISRAFMNGSALEHVVEFGLDYPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVL  117 (628)
T ss_dssp             CEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEE
T ss_pred             ceEEEEEECCCCEEEEEECCCCeEEEEECCCCCcEEEEeCCCCCcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEE
Confidence            467899998766654 5556788999988766555544432223457888876655544 4456788888875432    


Q ss_pred             ----cccEEEEEEcCC-CCEEEEEe-CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCC
Q psy10953         87 ----SSWVLSTAFTRD-GKFFISAS-ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKP  159 (181)
Q Consensus        87 ----~~~v~~~~~s~~-~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~  159 (181)
                          ......++++|. |.++++-. ..+.|...++...........-....+++++++++.|+.+. ..+.|..+++..
T Consensus       118 ~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG  197 (628)
T 4a0p_A          118 VWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTTLVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLG  197 (628)
T ss_dssp             ECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTS
T ss_pred             EeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEEEECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCC
Confidence                234678999985 55444432 24678878776544333333445688999999877665554 567888888865


Q ss_pred             C
Q psy10953        160 E  160 (181)
Q Consensus       160 ~  160 (181)
                      .
T Consensus       198 ~  198 (628)
T 4a0p_A          198 L  198 (628)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.59  E-value=0.0005  Score=57.19  Aligned_cols=153  Identities=10%  Similarity=0.066  Sum_probs=91.9

Q ss_pred             EEEEEEcCCC-CEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCC----
Q psy10953         14 MWNVVFSPDD-KYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDANTGH----   86 (181)
Q Consensus        14 ~~~~~~s~~g-~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~~~~----   86 (181)
                      ...|++.+.+ +++++-...+.|.++++.......++.........++++|++.+|+....  .+.|..+++....    
T Consensus       455 P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l  534 (699)
T 1n7d_A          455 PDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSL  534 (699)
T ss_dssp             CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCEEEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEE
T ss_pred             cceEEEEeeCCcEEEEeccCCeEEEEecCCCceEEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEE
Confidence            4567887544 44455456788999998766554444332223347888987655554432  2677777654221    


Q ss_pred             ----cccEEEEEEcCCC-CEEEEEeCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         87 ----SSWVLSTAFTRDG-KFFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        87 ----~~~v~~~~~s~~~-~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                          ......++|+|++ +++++-+..+.|..+++..........   ......++++..+ +.+++-...+.|..++..
T Consensus       535 ~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~d~dG~~~~~~~~~~~~~~~P~glavd~~-~lywtd~~~~~V~~~d~~  613 (699)
T 1n7d_A          535 VTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFED-KVFWTDIINEAIFSANRL  613 (699)
T ss_dssp             SCSSCSSCCCEEECTTTCCEEEEETTTTEEEEECSSSSCCEEECCCSSSCSSCCCCEEETT-EEEEECSTTTCEEEEETT
T ss_pred             EeCCCCCccEEEEeccCCEEEEEecCCCeEEEEccCCCceEEEEecCCcCCCceEeEEECC-EEEEEeCCCCeEEEEEcc
Confidence                2345679999875 455555567889999986533222221   1123445666543 445555567899999987


Q ss_pred             CCeeEEEcC
Q psy10953        159 PEEEVEVNG  167 (181)
Q Consensus       159 ~~~~~~~~~  167 (181)
                      ++..+.++.
T Consensus       614 ~G~~~~~i~  622 (699)
T 1n7d_A          614 TGSDVNLLA  622 (699)
T ss_dssp             TEEEEECCC
T ss_pred             CCCceEEee
Confidence            777666543

>3m0c_C LDL receptor, low-density lipoprotein receptor; protein complex, beta propeller, cholesterol clearance, PCSK autocatalytic cleavage; 7.01A {Homo sapiens}

Probab=97.55  E-value=0.029  Score=47.38  Aligned_cols=152  Identities=10%  Similarity=0.036  Sum_probs=95.2

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCC---
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDANTGH---   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~~~~---   86 (181)
                      ....|++.+.++.| ++-...+.|.+.++.......++.........++++|.+..|+....  .+.|...++....   
T Consensus       472 ~P~GLAvD~~~~~LY~tD~~~~~I~v~~ldG~~~~~l~~~~l~~P~gIaVDp~~g~LYwtD~g~~~~I~~~~~dG~~~~~  551 (791)
T 3m0c_C          472 APDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYS  551 (791)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEE
T ss_pred             CcceeeeeecCCcEEEEecCCCeEEEEeCCCCeEEEEEeCCCCCcceEEEecCCCCEEEecCCCCCeEEEEecCCCceEE
Confidence            34678998877555 45556788999998866555554433334568999998666665543  3677777775322   


Q ss_pred             -----cccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeec---CCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         87 -----SSWVLSTAFTRDGKFFISA-SADHTVRVWNFARRENMHTFKH---ADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                           ..+...+++++.+..|..+ ...+.|..+++...........   -....++++.. ++.+++-...+.|...+.
T Consensus       552 lv~~~l~~P~GLavD~~~~~LYwaD~~~~~I~~~d~dG~~~~~v~~~~~~l~~P~glav~~-~~lYwtD~~~~~I~~~dk  630 (791)
T 3m0c_C          552 LVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVFE-DKVFWTDIINEAIFSANR  630 (791)
T ss_dssp             EECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEET-TEEEEEETTTTEEEEEET
T ss_pred             EEeCCCCCceEEEEecCCCeEEEEeCCCCcEEEEecCCCceEEEecCCCccCCCCEEEEeC-CEEEEEECCCCEEEEEeC
Confidence                 2467889999766544444 4567899999865433322221   12355676643 344555556778888887


Q ss_pred             CCCeeEEE
Q psy10953        158 KPEEEVEV  165 (181)
Q Consensus       158 ~~~~~~~~  165 (181)
                      .++..+.+
T Consensus       631 ~tG~~~~~  638 (791)
T 3m0c_C          631 LTGSDVNL  638 (791)
T ss_dssp             TTCCCCEE
T ss_pred             CCCcceEE
Confidence            66654443

>1n7d_A LDL receptor, low-density lipoprotein receptor; familial hypercholesterolemia, cholestero metabolism, lipid transport; HET: NAG BMA MAN KEG; 3.70A {Homo sapiens} SCOP: b.68.5.1 g.3.11.1 g.3.11.1 g.3.11.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 g.12.1.1 PDB: 2lgp_A 1xfe_A 1f5y_A 1ldl_A 1ldr_A 1d2j_A 1f8z_A

Probab=97.52  E-value=0.00057  Score=56.84  Aligned_cols=153  Identities=4%  Similarity=-0.062  Sum_probs=88.1

Q ss_pred             EEEEEEcCCCCEEEEE-eCCCcEEEEeCCC----CcEEEEEecCCceEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCC-
Q psy10953         14 MWNVVFSPDDKYVLSG-SQSGKINLYGVET----GKLEQIFDTRGKFTLSIAYSTDGHWI-ASGALDGIINIFDANTGH-   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~----~~~~~~~~~~~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~~~~~-   86 (181)
                      ...++|++.++.|+.+ ...+.|+.+++.+    ......+.........+++++.+..| ++-...+.|.++++.... 
T Consensus       408 p~gla~d~~~~~Ly~sD~~~~~I~~~~~~g~~~~~~~~~~i~~~~~~P~glavD~~~g~LY~tD~~~~~I~v~d~dg~~~  487 (699)
T 1n7d_A          408 VVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKR  487 (699)
T ss_dssp             CCCCEEETTTTEEEECCTTTTSBEEEESCCCCC-CCCCCBCCSCC--CCCEECCCSSSBCEECCTTTSCEEEEBSSSCCE
T ss_pred             eEEEccccccCeEEEEecCCCeEEEEecCCCCCCcceEEEEeCCCCCcceEEEEeeCCcEEEEeccCCeEEEEecCCCce
Confidence            4578899877666554 4457899898875    22222222111122357777554444 444456788888875432 


Q ss_pred             -------cccEEEEEEcCCCC-EEEEEeCC-CcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEE-EEEcCCCcEEEE
Q psy10953         87 -------SSWVLSTAFTRDGK-FFISASAD-HTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKF-VSVGEDKAVHMY  155 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~-~l~~~~~d-~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l-~~~~~d~~v~i~  155 (181)
                             ......++++|.+. ++++-... +.|+.+++.......... .-...++++++|++++| ++-+..+.|..+
T Consensus       488 ~~l~~~~~~~P~giavDp~~g~ly~td~~~~~~I~~~~~dG~~~~~l~~~~l~~PnGlavd~~~~~LY~aD~~~~~I~~~  567 (699)
T 1n7d_A          488 KTLFREQGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSI  567 (699)
T ss_dssp             EEECCCSSCCCCCEECCSSSSCCEECCCSSSCCEEBCCSSSCCCCEESCSSCSSCCCEEECTTTCCEEEEETTTTEEEEE
T ss_pred             EEEEeCCCCCcceEEEccCCCcEEEcccCCCCeEEEEeCCCCCeeEEEeCCCCCccEEEEeccCCEEEEEecCCCeEEEE
Confidence                   12346788898654 44433222 678888775432211111 12346789999976555 555556789999


Q ss_pred             eCCCCeeEEEc
Q psy10953        156 SYKPEEEVEVN  166 (181)
Q Consensus       156 ~~~~~~~~~~~  166 (181)
                      ++....+..+.
T Consensus       568 d~dG~~~~~~~  578 (699)
T 1n7d_A          568 DVNGGNRKTIL  578 (699)
T ss_dssp             CSSSSCCEEEC
T ss_pred             ccCCCceEEEE
Confidence            98654443333

>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*

Probab=97.51  E-value=0.011  Score=48.35  Aligned_cols=147  Identities=14%  Similarity=0.179  Sum_probs=91.9

Q ss_pred             EEEEcCCCCE----EEEEeCCCcEEEEeCCCCcEEEEEecCCc----eEE-EEEECCCCCEEEEee------CCCcEEEE
Q psy10953         16 NVVFSPDDKY----VLSGSQSGKINLYGVETGKLEQIFDTRGK----FTL-SIAYSTDGHWIASGA------LDGIINIF   80 (181)
Q Consensus        16 ~~~~s~~g~~----l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~-~~~~s~d~~~l~~~~------~d~~v~i~   80 (181)
                      .++++|.+..    ++.++.|+.+..+|.++|+.+-.......    .+. ...+. ++ .++.++      .++.++-+
T Consensus       110 g~av~p~~g~~~~rV~v~t~dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~ssP~v~-~g-~V~vg~~g~e~g~~g~v~A~  187 (599)
T 1w6s_A          110 GLAYWPGDGKTPALILKTQLDGNVAALNAETGETVWKVENSDIKVGSTLTIAPYVV-KD-KVIIGSSGAELGVRGYLTAY  187 (599)
T ss_dssp             CCEEECCCSSSCCEEEEECTTSEEEEEETTTCCEEEEEECCCGGGTCBCCSCCEEE-TT-EEEECCBCGGGTCCCEEEEE
T ss_pred             ceEEEecCCcceeEEEEEcCCCEEEEEECCCCCEEEeecCCCCCccceeecCCEEE-CC-EEEEEecccccCCCCeEEEE
Confidence            3455444444    78888899999999999998755543220    111 11111 34 445544      37899999


Q ss_pred             eCCCCCcccEE----------------------------------------------EEEEcCCCCEEEEEeCC------
Q psy10953         81 DANTGHSSWVL----------------------------------------------STAFTRDGKFFISASAD------  108 (181)
Q Consensus        81 d~~~~~~~~v~----------------------------------------------~~~~s~~~~~l~~~~~d------  108 (181)
                      |.++++..+-.                                              ..++++...++..++.+      
T Consensus       188 D~~TG~~~W~~~~~~~~~~~~~~p~~~~~~~~~g~~~~g~~tw~g~~~~~gg~~~W~~~a~d~~~g~vy~g~g~~~p~~~  267 (599)
T 1w6s_A          188 DVKTGEQVWRAYATGPDKDLLLASDFNIKNPHYGQKGLGTGTWEGDAWKIGGGTNWGWYAYDPGTNLIYFGTGNPAPWNE  267 (599)
T ss_dssp             ETTTCCEEEEEESSSCHHHHTBCTTTTTTCGGGCCTTHHHHTSSTTGGGGCCCCCCSCCEEETTTTEEEEECCCCSCSCG
T ss_pred             ECCCCcEEEEEcCCCCccccccccccccccccccccccccccCCCcceecCCCccccceeEeCCCCEEEEeCCCCccccC
Confidence            99876532211                                              12445555555555543      


Q ss_pred             ----------CcEEEEecCCCceeeeeecCC----------cEEEEEEc-cCC---CEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953        109 ----------HTVRVWNFARRENMHTFKHAD----------QVWCVCVA-PDG---DKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       109 ----------~~i~v~d~~~~~~~~~~~~~~----------~v~~~~~s-p~g---~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                                ..|.-+|.++++....++...          ...-+... .+|   ..++.++.++.++++|..+++.+-
T Consensus       268 ~~r~gd~~y~~sv~Ald~~TG~~~W~~q~~~~d~wd~d~~~~p~l~d~~~~~G~~~~~v~~~~~~G~l~~lD~~tG~~lw  347 (599)
T 1w6s_A          268 TMRPGDNKWTMTIFGRDADTGEAKFGYQKTPHDEWDYAGVNVMMLSEQKDKDGKARKLLTHPDRNGIVYTLDRTDGALVS  347 (599)
T ss_dssp             GGSCSCCTTSSEEEEEETTTCCEEEEEESSTTCSSCCCCCCCCEEEEEECTTSCEEEEEEEECTTSEEEEEETTTCCEEE
T ss_pred             cccCCCccccceEEEEeCCCCceeeEeecCCCccccccCCCccEEEeccccCCcEEEEEEEECCCcEEEEEECCCCCEee
Confidence                      379999999999887765211          11112222 567   467778899999999999988764

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.36  E-value=0.024  Score=46.51  Aligned_cols=154  Identities=7%  Similarity=0.017  Sum_probs=91.5

Q ss_pred             eeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCCCC---
Q psy10953         12 VDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDANTG---   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~~~---   85 (181)
                      .....+++.+.++.| ++-...+.|.+.++.......++...-.....++++|.+..|+....  .+.|...+....   
T Consensus        84 ~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~  163 (619)
T 3s94_A           84 LSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRKVLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRF  163 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCE
T ss_pred             CCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEEEEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceE
Confidence            446789999865555 45556789999998765444444222223347889887655555443  456666665432   


Q ss_pred             -----CcccEEEEEEcCCCCE-EEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         86 -----HSSWVLSTAFTRDGKF-FISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 -----~~~~v~~~~~s~~~~~-l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                           ...+...++++++++. +++-...+.|..+|+.......... ......++++..+ ..+++-...+.|...+..
T Consensus       164 ~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~~dG~~~~~~~~~~~~~P~gi~~~~~-~ly~td~~~~~V~~~d~~  242 (619)
T 3s94_A          164 IIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSNLDGTNRQAVVKGSLPHPFALTLFED-ILYWTDWSTHSILACNKY  242 (619)
T ss_dssp             EEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEESSSCCEEC---------CCCEEESSS-EEEEECTTTCSEEEEESS
T ss_pred             EEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEecCCCCccEEEEeCCCCCceEEEEeCC-EEEEecCCCCEEEEEECC
Confidence                 2345788999997554 4444456789999886543222111 1122346677655 444544457789998887


Q ss_pred             CCeeEEEc
Q psy10953        159 PEEEVEVN  166 (181)
Q Consensus       159 ~~~~~~~~  166 (181)
                      ++......
T Consensus       243 tg~~~~~i  250 (619)
T 3s94_A          243 TGEGLREI  250 (619)
T ss_dssp             SCCCCEEC
T ss_pred             CCcccEEE
Confidence            77654443

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=97.26  E-value=0.065  Score=44.84  Aligned_cols=146  Identities=15%  Similarity=0.145  Sum_probs=93.3

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC---
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF---DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---   85 (181)
                      ..+.++...++|+ |..|+.++-|..++..+++.....   ......+.++...++|.+.+ |..++-+..+|..++   
T Consensus       363 ~~v~~i~~d~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~  440 (781)
T 3v9f_A          363 KVVSSVCDDGQGK-LWIGTDGGGINVFENGKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ  440 (781)
T ss_dssp             SCEEEEEECTTSC-EEEEEBSSCEEEEETTEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE
T ss_pred             cceEEEEEcCCCC-EEEEeCCCcEEEEECCCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE
Confidence            3478888887776 556666667888987765443221   11234567788888887554 665556777876532   


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-c-----CCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-H-----ADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~-----~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                             ....|.++..+++|++.+...  +-+..||..+++...... .     ...|.+++..++|+..+ +..++.+
T Consensus       441 ~~~~~~~~~~~v~~i~~d~~g~lwigt~--~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWi-gt~~~Gl  517 (781)
T 3v9f_A          441 IIELEKNELLDVRVFYEDKNKKIWIGTH--AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWI-GTFGGGV  517 (781)
T ss_dssp             ECCSTTTCCCCEEEEEECTTSEEEEEET--TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEE-EESSSCE
T ss_pred             EeccCCCCCCeEEEEEECCCCCEEEEEC--CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEE-EEcCCCE
Confidence                   234688888888888665443  458889987654322211 1     35689999999887655 4444557


Q ss_pred             EEEeCCCCee
Q psy10953        153 HMYSYKPEEE  162 (181)
Q Consensus       153 ~i~~~~~~~~  162 (181)
                      ..|+...+..
T Consensus       518 ~~~~~~~~~~  527 (781)
T 3v9f_A          518 GIYTPDMQLV  527 (781)
T ss_dssp             EEECTTCCEE
T ss_pred             EEEeCCCCeE
Confidence            7787765543

>3s94_A LRP-6, low-density lipoprotein receptor-related protein; WNT, LDL receptor-like protein, dickko YWTD B-propeller, signaling protein; HET: NAG; 2.80A {Homo sapiens} PDB: 4dg6_A*

Probab=97.21  E-value=0.066  Score=43.89  Aligned_cols=151  Identities=7%  Similarity=-0.045  Sum_probs=90.6

Q ss_pred             eeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcE-EEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCCCCCc-
Q psy10953         12 VDMWNVVFSPDDKYVLSG-SQSGKINLYGVETGKL-EQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDANTGHS-   87 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~~~~~-   87 (181)
                      .....++|++.++.|+.+ ...+.|..+++..... ...+...-.....+++++.+..|+. -...+.|.+.++..... 
T Consensus        40 ~~~~~ld~~~~~~~ly~sD~~~~~I~r~~~~g~~~~~~v~~~~~~~P~GlAvD~~~~~ly~~d~~~~~I~v~~~dG~~~~  119 (619)
T 3s94_A           40 EDAAAVDFVFSHGLIYWSDVSEEAIKRTEFNKTESVQNVVVSGLLSPDGLACDWLGEKLYWTDSETNRIEVSNLDGSLRK  119 (619)
T ss_dssp             SCEEEEEEETTTTEEEEEETTTTEEEEEEC-----CEEEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCE
T ss_pred             CceEEEEEEeCCCEEEEEECCCCeEEEEEccCCCceEEEEeCCCCCcCeEEEEecCCEEEEEeCCCCEEEEEECCCCCEE
Confidence            346789999876666544 4467888888875532 2333322134568999986665554 45578899998865332 


Q ss_pred             -------ccEEEEEEcCCCC-EEEEEeC-CCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc-CCCcEEEEe
Q psy10953         88 -------SWVLSTAFTRDGK-FFISASA-DHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG-EDKAVHMYS  156 (181)
Q Consensus        88 -------~~v~~~~~s~~~~-~l~~~~~-d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~  156 (181)
                             .....++++|.+. ++++-.. .+.|...++.......... .-...++++++++++.|+.+. ..+.|..++
T Consensus       120 ~l~~~~l~~P~~Iavdp~~g~ly~tD~g~~~~I~r~~~dG~~~~~l~~~~~~~P~Glald~~~~~LY~aD~~~~~I~~~~  199 (619)
T 3s94_A          120 VLFWQELDQPRAIALDPSSGFMYWTDWGEVPKIERAGMDGSSRFIIINSEIYWPNGLTLDYEEQKLYWADAKLNFIHKSN  199 (619)
T ss_dssp             EEECSSCSCCCCEEEETTTTEEEEEECSSSCEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEETTTCCEEEES
T ss_pred             EEEeCCCCCCceEEEecCCCeEEEeccCCCCEEEEEECCCCceEEEEeCCCCCCcEEEEEccCCEEEEEeCCCCeEEEec
Confidence                   2346788998754 4444322 3567666665433222221 234578999999766665554 567888888


Q ss_pred             CCCCee
Q psy10953        157 YKPEEE  162 (181)
Q Consensus       157 ~~~~~~  162 (181)
                      +....+
T Consensus       200 ~dG~~~  205 (619)
T 3s94_A          200 LDGTNR  205 (619)
T ss_dssp             SSCCEE
T ss_pred             CCCCcc
Confidence            865433

>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A

Probab=97.08  E-value=0.011  Score=48.64  Aligned_cols=104  Identities=13%  Similarity=0.207  Sum_probs=68.0

Q ss_pred             EEEECC-CCCEEEEeeCCC-----------cEEEEeCCCCC-----------cccEEEEEEcCCCCEEEEEeC-CCcEEE
Q psy10953         58 SIAYST-DGHWIASGALDG-----------IINIFDANTGH-----------SSWVLSTAFTRDGKFFISASA-DHTVRV  113 (181)
Q Consensus        58 ~~~~s~-d~~~l~~~~~d~-----------~v~i~d~~~~~-----------~~~v~~~~~s~~~~~l~~~~~-d~~i~v  113 (181)
                      ..++.+ +++.++.|+.+.           .+.+||+.+..           ......+++.++++.++.|+. +..+.+
T Consensus       190 ~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~lyv~GG~~~~~v~~  269 (656)
T 1k3i_A          190 AAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSL  269 (656)
T ss_dssp             EEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEE
T ss_pred             eEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCcccCCCCCCccccccCCCCCCEEEeCCCCCCceEE
Confidence            455666 788888876543           57889986542           112224567789999999884 568999


Q ss_pred             EecCCCce--eeeeecCCcEEEEEEccCCCEEEEEc-CC-----CcEEEEeCCCCe
Q psy10953        114 WNFARREN--MHTFKHADQVWCVCVAPDGDKFVSVG-ED-----KAVHMYSYKPEE  161 (181)
Q Consensus       114 ~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~-~d-----~~v~i~~~~~~~  161 (181)
                      ||..+.+=  +..+...-.-.++++.++|+.++.|+ .+     +.+.+||..+..
T Consensus       270 yd~~t~~W~~~~~~~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~  325 (656)
T 1k3i_A          270 YDSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  325 (656)
T ss_dssp             EEGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ecCcCCceeECCCCCccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCc
Confidence            99876531  11122111123456678999999988 34     568999987654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=97.00  E-value=0.065  Score=40.05  Aligned_cols=140  Identities=14%  Similarity=0.144  Sum_probs=79.0

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEE-EeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC--------
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINL-YGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA--------   82 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~-~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~--------   82 (181)
                      ..++.++++|++.+++.+. .+.+.. .|-........-.........+.++++++.++ ++.+|.+++.+.        
T Consensus       163 ~~~~~~~~~~~~~~~~~g~-~G~~~~S~d~gG~tW~~~~~~~~~~~~~~~~~~~g~~~~-~~~~G~~~~s~~D~G~tW~~  240 (327)
T 2xbg_A          163 GVMRNLNRSPSGEYVAVSS-RGSFYSTWEPGQTAWEPHNRTTSRRLHNMGFTPDGRLWM-IVNGGKIAFSDPDNSENWGE  240 (327)
T ss_dssp             CCEEEEEECTTSCEEEEET-TSSEEEEECTTCSSCEEEECCSSSCEEEEEECTTSCEEE-EETTTEEEEEETTEEEEECC
T ss_pred             cceEEEEEcCCCcEEEEEC-CCcEEEEeCCCCCceeECCCCCCCccceeEECCCCCEEE-EeCCceEEEecCCCCCeeEe
Confidence            3568899999988776664 444433 33211111111112233455788888887554 445666666531        


Q ss_pred             -CCC---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         83 -NTG---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        83 -~~~---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                       ..+   ....+..+++.++++.++++. ++.+ ++....++.-....    .+..+++++|.+++ .+++++.++.|..
T Consensus       241 ~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i-~~S~DgG~tW~~~~~~~~~~~~~~~v~~~~~~-~~~~~G~~G~i~~  317 (327)
T 2xbg_A          241 LLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL-LCSQDGGQTWQQDVDVKKVPSNFYKILFFSPD-QGFILGQKGILLR  317 (327)
T ss_dssp             CBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE-EEESSTTSSCEECGGGTTSSSCCCEEEEEETT-EEEEECSTTEEEE
T ss_pred             ccCCcccCCcceEEEEecCCCEEEEEeC-CCeE-EEeCCCCcccEEcCccCCCCCCeEEEEEECCC-ceEEEcCCceEEE
Confidence             112   122478888998888777655 5666 33333333222222    23467788887655 4666777887766


Q ss_pred             Ee
Q psy10953        155 YS  156 (181)
Q Consensus       155 ~~  156 (181)
                      ++
T Consensus       318 ~~  319 (327)
T 2xbg_A          318 YV  319 (327)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>4a0p_A LRP6, LRP-6, low-density lipoprotein receptor-related protein; signaling, WNT signalling, WNT3A, DKK1, MESD; HET: NAG; 1.90A {Homo sapiens} PDB: 3s2k_A* 3s8z_A* 3s8v_A*

Probab=96.94  E-value=0.12  Score=42.38  Aligned_cols=151  Identities=3%  Similarity=-0.077  Sum_probs=94.0

Q ss_pred             eEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEEeCCCCC---
Q psy10953         13 DMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIFDANTGH---   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~d~~~~~---   86 (181)
                      ....+++.+.++.| ++-...+.|.+.++.......++...-.....++++|....|+....  .+.|...++....   
T Consensus        81 ~P~GlAvD~~~~~LY~tD~~~~~I~v~~~dG~~~~~l~~~~l~~P~~iavdp~~G~lY~tD~g~~~~I~r~~~dG~~~~~  160 (628)
T 4a0p_A           81 YPEGMAVDWLGKNLYWADTGTNRIEVSKLDGQHRQVLVWKDLDSPRALALDPAEGFMYWTEWGGKPKIDRAAMDGSERTT  160 (628)
T ss_dssp             CCCEEEEETTTTEEEEEETTTTEEEEEETTSTTCEEEECSSCCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCSCEE
T ss_pred             CcceEEEEeCCCEEEEEECCCCEEEEEecCCCcEEEEEeCCCCCcccEEEccCCCeEEEeCCCCCCEEEEEeCCCCceEE
Confidence            35678888765555 55555678999998755443343233333468999986555555442  4667777665332   


Q ss_pred             ----cccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCe
Q psy10953         87 ----SSWVLSTAFTRDGKFFISA-SADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEE  161 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~  161 (181)
                          ......++++++++.|..+ ...+.|..+|+................++++.. ++.+++-...+.|...+..++.
T Consensus       161 l~~~~~~P~GlalD~~~~~LY~aD~~~~~I~~~d~dG~~~~v~~~~l~~P~glav~~-~~ly~tD~~~~~I~~~dk~tg~  239 (628)
T 4a0p_A          161 LVPNVGRANGLTIDYAKRRLYWTDLDTNLIESSNMLGLNREVIADDLPHPFGLTQYQ-DYIYWTDWSRRSIERANKTSGQ  239 (628)
T ss_dssp             EECSCSSEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECCSCEEEEEEET-TEEEEEETTTTEEEEEETTTCC
T ss_pred             EECCCCCcceEEEccccCEEEEEECCCCEEEEEcCCCCceEEeeccCCCceEEEEEC-CEEEEecCCCCEEEEEECCCCC
Confidence                2457889999976654444 456789999986543321122233466888865 4555555567889988876665


Q ss_pred             eEE
Q psy10953        162 EVE  164 (181)
Q Consensus       162 ~~~  164 (181)
                      ...
T Consensus       240 ~~~  242 (628)
T 4a0p_A          240 NRT  242 (628)
T ss_dssp             SCE
T ss_pred             ceE
Confidence            433

>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}

Probab=96.93  E-value=0.14  Score=42.84  Aligned_cols=144  Identities=13%  Similarity=0.153  Sum_probs=95.3

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe---------cCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD---------TRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~---------~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ..++++...++|. |+.|..++-|..++..++.+.....         .....+.++...++|.+. .|..++-+..||.
T Consensus       313 ~~v~~i~~D~~g~-lWigt~~~Gl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~v~~i~~d~~g~lW-igt~~~Gl~~~~~  390 (781)
T 3v9f_A          313 ASARYIFQDSFNN-IWIGTWGGGINFISNAPPTFHTWSYSPTQMNESSLSNKVVSSVCDDGQGKLW-IGTDGGGINVFEN  390 (781)
T ss_dssp             SCEEEEEECSSCC-EEEEEBSSCEEEECSSCCSCEEEC----CCCSSCCSSSCEEEEEECTTSCEE-EEEBSSCEEEEET
T ss_pred             CeEEEEEEeCCCC-EEEEecCCeEEEeCCCCCcceeeccCccccccCCCCCcceEEEEEcCCCCEE-EEeCCCcEEEEEC
Confidence            3478888888776 6777777888889887666543321         123457788888888744 4554555777776


Q ss_pred             CCC-----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCEEEEEc
Q psy10953         83 NTG-----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        83 ~~~-----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      .++           ....|.++..+++|++.+ ++.++-+..+|..+++.. .+.    ....|.++...++|+..+ +.
T Consensus       391 ~~~~~~~~~~~~~~~~~~v~~i~~d~~g~lWi-gt~~~Gl~~~~~~~~~~~-~~~~~~~~~~~v~~i~~d~~g~lwi-gt  467 (781)
T 3v9f_A          391 GKRVAIYNKENRELLSNSVLCSLKDSEGNLWF-GTYLGNISYYNTRLKKFQ-IIELEKNELLDVRVFYEDKNKKIWI-GT  467 (781)
T ss_dssp             TEEEEECC-----CCCSBEEEEEECTTSCEEE-EETTEEEEEECSSSCEEE-ECCSTTTCCCCEEEEEECTTSEEEE-EE
T ss_pred             CCCeEEEccCCCCCCCcceEEEEECCCCCEEE-EeccCCEEEEcCCCCcEE-EeccCCCCCCeEEEEEECCCCCEEE-EE
Confidence            431           224578888888888665 555566888988765432 222    235688998888886555 44


Q ss_pred             CCCcEEEEeCCCCe
Q psy10953        148 EDKAVHMYSYKPEE  161 (181)
Q Consensus       148 ~d~~v~i~~~~~~~  161 (181)
                      . +.+.+|+..++.
T Consensus       468 ~-~Gl~~~~~~~~~  480 (781)
T 3v9f_A          468 H-AGVFVIDLASKK  480 (781)
T ss_dssp             T-TEEEEEESSSSS
T ss_pred             C-CceEEEeCCCCe
Confidence            4 578888876654

>3sre_A PON1, serum paraoxonase; directed evolution, 6-blades-propeller fold, hydrolase; HET: LMT; 1.99A {Artificial gene} PDB: 1v04_A* 3srg_A*

Probab=96.80  E-value=0.07  Score=40.68  Aligned_cols=144  Identities=17%  Similarity=0.241  Sum_probs=83.7

Q ss_pred             eEEEEEEcC--CCC-EEEEEe-C--CCcEEEEeCCCC-cEEEEEec-CC---ceEEEEEECCCCCEEEEee---------
Q psy10953         13 DMWNVVFSP--DDK-YVLSGS-Q--SGKINLYGVETG-KLEQIFDT-RG---KFTLSIAYSTDGHWIASGA---------   72 (181)
Q Consensus        13 ~~~~~~~s~--~g~-~l~~~~-~--d~~i~~~d~~~~-~~~~~~~~-~~---~~~~~~~~s~d~~~l~~~~---------   72 (181)
                      ....+++.+  +|. +|+.+. .  +.++.+|++..+ +....+.. .+   .....+.+.++|...++..         
T Consensus       113 ~PhGi~~~~d~dg~~~L~Vvnh~~~~s~ielf~~d~~~~~~~~~~~~~g~~~~~pND~~v~~~G~fyvt~~~~ftd~~~~  192 (355)
T 3sre_A          113 NPHGISTFIDDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLK  192 (355)
T ss_dssp             CEEEEEEEECTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCSSHHHH
T ss_pred             eeeeeEEEECCCCcEEEEEEECCCCCCeEEEEEEECCCCEEEEEeccccCCCCCCceEEEeCCCCEEecCCcEeCCcccc
Confidence            456677655  454 444442 2  467888877543 33222221 11   1245788889998766643         


Q ss_pred             --------CCCcEEEEeCCCCC-----cccEEEEEEcCCCCEEEEE-eCCCcEEEEecCC-Cce--eeeeecCCcEEEEE
Q psy10953         73 --------LDGIINIFDANTGH-----SSWVLSTAFTRDGKFFISA-SADHTVRVWNFAR-REN--MHTFKHADQVWCVC  135 (181)
Q Consensus        73 --------~d~~v~i~d~~~~~-----~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~-~~~--~~~~~~~~~v~~~~  135 (181)
                              ..+.++.+|....+     -...+.++|+||++.+..+ +..+.|+.|++.. +..  ...+......-.++
T Consensus       193 ~~e~~~~~~~g~vyr~d~~~~~~~~~~l~~pNGia~spDg~~lYvadt~~~~I~~~~~~~~g~l~~~~~~~~~g~PDGi~  272 (355)
T 3sre_A          193 SWEMHLGLAWSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNIS  272 (355)
T ss_dssp             HHHHHTTCCCEEEEEECTTCCEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEE
T ss_pred             cchhhccCCccEEEEEECCeEEEeecCCcccCcceECCCCCEEEEEeCCCCeEEEEEECCCCcEecCEEEeCCCCCceEE
Confidence                    12456666653211     1245789999999865544 4578999999863 221  12333455677899


Q ss_pred             Ecc-CCCEEEEEcCC-CcEEEEe
Q psy10953        136 VAP-DGDKFVSVGED-KAVHMYS  156 (181)
Q Consensus       136 ~sp-~g~~l~~~~~d-~~v~i~~  156 (181)
                      +.+ +|++.+++..+ ..|..|+
T Consensus       273 vD~e~G~lwva~~~~g~~v~~~~  295 (355)
T 3sre_A          273 VDPVTGDLWVGCHPNGMRIFFYD  295 (355)
T ss_dssp             ECTTTCCEEEEEESCHHHHHSCC
T ss_pred             EeCCCCcEEEEecCCceEEEEEC
Confidence            999 59887766533 2444443

>3pbp_A Nucleoporin NUP82; beta-propeller, mRNA export, mRNP remodelling, nucleocytoplasmic transport, protein transport; HET: PGE; 2.60A {Saccharomyces cerevisiae} PDB: 3tkn_A

Probab=96.80  E-value=0.033  Score=43.53  Aligned_cols=101  Identities=14%  Similarity=0.164  Sum_probs=72.1

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE------------EEEEecC------CceEEEEEECCC---CCEEEEe
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL------------EQIFDTR------GKFTLSIAYSTD---GHWIASG   71 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~------------~~~~~~~------~~~~~~~~~s~d---~~~l~~~   71 (181)
                      ++..+..+|+|++||..+ +.+|.+..+..+..            ...+...      ...+..+.|+|-   +..|++-
T Consensus        67 ~i~qlvlSpsG~lLAl~g-~~~V~Vv~LP~~~~~~~~~~~~~~~q~~ty~l~~~~~~~~s~I~qVlWHPl~~~ds~LVVL  145 (452)
T 3pbp_A           67 DTFHVISSTSGDLLCLFN-DNEIFVMEVPWGYSNVEDVSIQDAFQIFHYSIDEEEVGPKSSIKKVLFHPKSYRDSCIVVL  145 (452)
T ss_dssp             TTCEEEECTTSSEEEEEC-SSEEEEEECCTTCSCCCCHHHHHTTEEEEEEGGGCC--CCCCEEEEEECTTBGGGCEEEEE
T ss_pred             ceeEEEECCCCCEEEEec-CCeEEEEEecCccccCcccccccccceeEEEcCCcccCCCCceeEEEeccccCCCCeEEEE
Confidence            467799999999998886 56899998874321            1122221      234778999995   4689999


Q ss_pred             eCCCcEEEEeCCCCC------------------cccEEEEEEcCCCCEEEE--EeCCCcEEEE
Q psy10953         72 ALDGIINIFDANTGH------------------SSWVLSTAFTRDGKFFIS--ASADHTVRVW  114 (181)
Q Consensus        72 ~~d~~v~i~d~~~~~------------------~~~v~~~~~s~~~~~l~~--~~~d~~i~v~  114 (181)
                      ..|+.|++||+....                  ...|.+++|.+++-.|-.  .+.+|.|+-.
T Consensus       146 tsD~~Ir~yDl~~s~~~P~~L~k~~~~fg~d~~~~ev~S~~Fg~~~lTLYvl~~t~~GDIYAl  208 (452)
T 3pbp_A          146 KEDDTITMFDILNSQEKPIVLNKPNNSFGLDARVNDITDLEFSKDGLTLYCLNTTEGGDIFAF  208 (452)
T ss_dssp             ETTSCEEEEETTCTTSCCEEESCCCSEEESCSSCCCEEEEEECTTSSCEEEEECTTSCEEEEE
T ss_pred             ecCCEEEEEEcccCCCCCcchhccccccCCCcccceEEEEEEcCCCcEEEEEecCCCCCEEEE
Confidence            999999999987421                  134678899998875555  4477888754

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.79  E-value=0.044  Score=40.76  Aligned_cols=138  Identities=9%  Similarity=0.057  Sum_probs=80.0

Q ss_pred             EEcCCCCEEEEEeCC--------------CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----CCCcEEE
Q psy10953         18 VFSPDDKYVLSGSQS--------------GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----LDGIINI   79 (181)
Q Consensus        18 ~~s~~g~~l~~~~~d--------------~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----~d~~v~i   79 (181)
                      -|+++|.+|+.+...              ..|+..++..++...+...  .   ...+++++++|+...    .+..++.
T Consensus        59 ~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~dg~~~~~l~~~--~---~~~~s~~g~~Iy~~~~~~~~~~~Iy~  133 (302)
T 3s25_A           59 YINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKRNGHGSTVLDPD--P---CIYASLIGNYIYYLHYDTQTATSLYR  133 (302)
T ss_dssp             EEEECSSEEEEEEECC------CCSSCCSEEEEEEETTSCCCEEEECS--C---EEEEEEETTEEEEEEESSSSCEEEEE
T ss_pred             eEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeCCCCcceEeecC--C---ccEEEEeCCEEEEEeecCCCCceEEE
Confidence            468899999876543              3677778776664443321  1   236677899888765    3345555


Q ss_pred             EeCCCCCcccEE---EEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCC--CcEE
Q psy10953         80 FDANTGHSSWVL---STAFTRDGKFFISASA-DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGED--KAVH  153 (181)
Q Consensus        80 ~d~~~~~~~~v~---~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--~~v~  153 (181)
                      .++.......+.   ..+++|+++.|.-.+. ...|+..++........+.  +... ..++|++++|+-...+  ..|.
T Consensus       134 ~~~dGs~~~~lt~~~~~~~~~~g~~iy~t~~g~~~Iy~~~l~g~~~~~l~~--~~~~-~~~~P~g~~iy~t~~~~~~~I~  210 (302)
T 3s25_A          134 IRIDGEEKKKIKNHYLFTCNTSDRYFYYNNPKNGQLYRYDTASQSEALFYD--CNCY-KPVVLDDTNVYYMDVNRDNAIV  210 (302)
T ss_dssp             EETTSCCCEEEESSCCCCSEEETTEEEEECTTTCCEEEEETTTTEEEEEEC--SCEE-EEEEEETTEEEEEEGGGTTEEE
T ss_pred             EECCCCCeEEEeCCCceEeeEECCEEEEEeCCCceEEEEECCCCCEEEEeC--CCcc-ceeeecCCEEEEEEcCCCcEEE
Confidence            566533221111   1456788887775554 5788888887654332222  2222 3466888887655533  2455


Q ss_pred             EEeCCCCeeE
Q psy10953        154 MYSYKPEEEV  163 (181)
Q Consensus       154 i~~~~~~~~~  163 (181)
                      .-++....+.
T Consensus       211 ~~~ldG~~~~  220 (302)
T 3s25_A          211 HVNINNPNPV  220 (302)
T ss_dssp             EECSSSCCCE
T ss_pred             EEECCCCCeE
Confidence            5555444433

>1tl2_A L10, protein (tachylectin-2); animal lectin, horseshoe CRAB, N-acetylglucosamine, beta- propeller, sugar binding protein; HET: NDG; 2.00A {Tachypleus tridentatus} SCOP: b.67.1.1 PDB: 3kif_A* 3kih_A*

Probab=96.67  E-value=0.097  Score=37.31  Aligned_cols=127  Identities=10%  Similarity=0.031  Sum_probs=75.9

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcE------EEEEecCC-ceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------c
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKL------EQIFDTRG-KFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------S   87 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~------~~~~~~~~-~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------~   87 (181)
                      ....|+...+| +++.=....++.      ...+-..+ .....++|+|+|.+.+.  .++.++-.+..+..       .
T Consensus         3 ~~~~l~~v~~d-~~y~G~~P~~~~~~~~~~a~~iG~~gw~~~~~laf~P~G~LYaV--~~G~Ly~~~~~t~~~~~W~~s~   79 (236)
T 1tl2_A            3 GESMLRGVYQD-KFYQGTYPQNKNDNWLARATLIGKGGWSNFKFLFLSPGGELYGV--LNDKIYKGTPPTHDNDNWMGRA   79 (236)
T ss_dssp             CCCCEEEEETT-EEEEESCCCSTTCCHHHHSEEEESSSCTTCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHC
T ss_pred             cceEEEEEeCC-cEEecCCCCCcccchhhhccccCccccccceeEEECCCccEEEE--eCCeEEEECCCCCCcccccccc
Confidence            34456666666 666555554441      11221111 12347999999986555  77777766664421       1


Q ss_pred             ccE--------EEEEEcCCCCEEEEEeCCCcEEEEecCCCc-eee-----eee--cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         88 SWV--------LSTAFTRDGKFFISASADHTVRVWNFARRE-NMH-----TFK--HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        88 ~~v--------~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~-~~~-----~~~--~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                      ..|        .++.|+|+|.+.++  .|+.|+-++..+.. ...     .+.  --..+..+.+.|+|...++.  |+.
T Consensus        80 t~IG~~Gw~~F~a~~fD~~G~LYav--~dG~iyr~~pP~~~~~~Wl~~a~~vg~~gw~~~~~lff~p~G~Lyav~--dg~  155 (236)
T 1tl2_A           80 KKIGNGGWNQFQFLFFDPNGYLYAV--SKDKLYKASPPQSDTDNWIARATEVGSGGWSGFKFLFFHPNGYLYAVH--GQQ  155 (236)
T ss_dssp             EEEECSCGGGCSEEEECTTSCEEEE--ETTEEEEESCCCSTTCCHHHHSEEEECSSGGGEEEEEECTTSCEEEEE--TTE
T ss_pred             cEecccccccceEEEECCCCCEEEe--CCCEEEEeCCCcCCCCceeccccEeccCCCCceEEEEECCCceEEEEe--CCc
Confidence            223        57889999998887  56999888764321 110     111  11467899999999887766  666


Q ss_pred             EEEE
Q psy10953        152 VHMY  155 (181)
Q Consensus       152 v~i~  155 (181)
                      ++-.
T Consensus       156 lyr~  159 (236)
T 1tl2_A          156 FYKA  159 (236)
T ss_dssp             EEEE
T ss_pred             EEec
Confidence            5443

>3amr_A 3-phytase; beta-propeller, phytate, MYO-inositol hexasulfate, hydrolase-hydrolase inhibitor complex; HET: IHS; 1.25A {Bacillus subtilis} PDB: 3ams_A* 2poo_A 1poo_A 1qlg_A 1h6l_A 1cvm_A

Probab=96.60  E-value=0.15  Score=38.75  Aligned_cols=127  Identities=14%  Similarity=0.242  Sum_probs=79.6

Q ss_pred             CCcEEEEeC--CCCcEEEEEe------cCCceEEEEEE--CCC-CC-EEEEeeCCCcEEEEeCCC---C-----------
Q psy10953         32 SGKINLYGV--ETGKLEQIFD------TRGKFTLSIAY--STD-GH-WIASGALDGIINIFDANT---G-----------   85 (181)
Q Consensus        32 d~~i~~~d~--~~~~~~~~~~------~~~~~~~~~~~--s~d-~~-~l~~~~~d~~v~i~d~~~---~-----------   85 (181)
                      +.+|.+|++  .++++...-.      ..-...+.+++  +|. ++ +++....++.+..|++..   +           
T Consensus        98 ~n~l~vf~iDp~~~~l~~i~~~~~pv~t~~~~pyGlcly~~~~~g~~yafV~~k~G~~~q~~l~~~~~g~~~~~lVR~f~  177 (355)
T 3amr_A           98 KNTIEIYAIDGKNGTLQSMTDPDHPIATAINEVYGFTLYHSQKTGKYYAMVTGKEGEFEQYELKADKNGYISGKKVRAFK  177 (355)
T ss_dssp             CCEEEEEEECTTTCCEEECSCTTSCEECCCSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSCEEEEEEEEEE
T ss_pred             CCeEEEEEECCCCCceeeccccccCcCCCCCCeeEEEEEecCCCCcEEEEEECCCCeEEEEEEEeCCCCcccceEEEEec
Confidence            478999977  3444333211      11123445666  775 44 466677789999988732   1           


Q ss_pred             CcccEEEEEEcCCCCEEEEEeCCCcEEEEecC-----CCceeeeee---cCCcEEEEEE--ccCCC-EEEEEc-CCCcEE
Q psy10953         86 HSSWVLSTAFTRDGKFFISASADHTVRVWNFA-----RRENMHTFK---HADQVWCVCV--APDGD-KFVSVG-EDKAVH  153 (181)
Q Consensus        86 ~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~-----~~~~~~~~~---~~~~v~~~~~--sp~g~-~l~~~~-~d~~v~  153 (181)
                      -.+.+..++.++....|..+..+.-|..|+..     +++.+..+.   ....+.++++  .++++ ++++.+ .++.+.
T Consensus       178 lgsq~EgcvvDd~~g~Lyv~eEd~GIw~~da~p~~~~~~~~v~~~~~g~l~aDvEGLai~~~~~g~gyLivSsQG~~s~~  257 (355)
T 3amr_A          178 MNSQTEGMAADDEYGRLYIAEEDEAIWKFSAEPDGGSNGTVIDRADGRHLTRDIEGLTIYYAADGKGYLMASSQGNSSYA  257 (355)
T ss_dssp             CSSCEEEEEEETTTTEEEEEETTTEEEEEECSTTSCSCCEEEEEBSSSSBCSCEEEEEEEECGGGCEEEEEEEGGGTEEE
T ss_pred             CCCCcceEEEcCCCCeEEEecccceEEEEeCCcCCCCCceEEEEecCCccccCcceEEEEecCCCCEEEEEEcCCCCEEE
Confidence            12345677888887778888877667666744     233443332   2236888888  56666 676666 467999


Q ss_pred             EEeCC
Q psy10953        154 MYSYK  158 (181)
Q Consensus       154 i~~~~  158 (181)
                      +|+..
T Consensus       258 Vydr~  262 (355)
T 3amr_A          258 IYDRQ  262 (355)
T ss_dssp             EEESS
T ss_pred             EEECC
Confidence            99996

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=96.54  E-value=0.086  Score=42.71  Aligned_cols=102  Identities=18%  Similarity=0.262  Sum_probs=69.6

Q ss_pred             EEEECCCCCEEEE-eeCCCcEEEEeCCC----------CC----------cccEEEEEEcCCCCEEEEEeCCCcEEEEec
Q psy10953         58 SIAYSTDGHWIAS-GALDGIINIFDANT----------GH----------SSWVLSTAFTRDGKFFISASADHTVRVWNF  116 (181)
Q Consensus        58 ~~~~s~d~~~l~~-~~~d~~v~i~d~~~----------~~----------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~  116 (181)
                      .+..+|||++++. |.-+.++.++|..+          ..          .......+|+++|.-..+.--|..|..|++
T Consensus       327 Gv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWni  406 (638)
T 3sbq_A          327 GCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWNM  406 (638)
T ss_dssp             CEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEEH
T ss_pred             ceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEec
Confidence            6889999999876 55688999999762          10          123577899999977677778999999998


Q ss_pred             CCC----------ceeeeeecCCcEEEEEE------ccCCCEEEEEc---CCCcE----------EEEeCCC
Q psy10953        117 ARR----------ENMHTFKHADQVWCVCV------APDGDKFVSVG---EDKAV----------HMYSYKP  159 (181)
Q Consensus       117 ~~~----------~~~~~~~~~~~v~~~~~------sp~g~~l~~~~---~d~~v----------~i~~~~~  159 (181)
                      ...          ..+..+.-.-.+-.+..      .|+|++|++..   .|+.+          +++|+..
T Consensus       407 ~~a~~~~~g~~~~~v~~k~dv~YqpGH~~~~~get~~~dGk~lv~lnK~skdrfl~vGpl~pen~QlidIsG  478 (638)
T 3sbq_A          407 EEAVRAYKGEKVNYIKQKLDVHYQPGHLHASLCETNEADGKWLVALSKFSKDRFLPVGPLHPENDQLIDISG  478 (638)
T ss_dssp             HHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCSCEEEEEESCCTTSSCCCSSSCCEEEEEEECSS
T ss_pred             cHHHHHhcCccCCeeeeccccccCCcccccCCCccCCCCccEEEEecccccccCcCCCCCCCCcceeEecCC
Confidence            542          23333432233444443      57899998865   45554          6677643

>3s25_A Hypothetical 7-bladed beta-propeller-like protein; structural genomics, joint center F structural genomics, JCSG; 1.88A {Eubacterium rectale}

Probab=96.51  E-value=0.16  Score=37.77  Aligned_cols=140  Identities=9%  Similarity=0.105  Sum_probs=80.2

Q ss_pred             EcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--------------CcEEEEeC
Q psy10953         19 FSPDDKYVLSGS--QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--------------GIINIFDA   82 (181)
Q Consensus        19 ~s~~g~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--------------~~v~i~d~   82 (181)
                      |+++|.++....  +++.|...+........+-.   ..  +.-++++|.+|+.....              ..++..++
T Consensus        21 ~~~~g~~iy~~n~~d~~~ly~~~~dg~~~~~l~~---~~--~~~i~~~g~~Iyy~~~~~~~~~~~~~~~~n~~~Iy~i~~   95 (302)
T 3s25_A           21 FCESDGEVFFSNTNDNGRLYAMNIDGSNIHKLSN---DT--AMYINADKNYVYYVRNNNQKITSQTFFSYDRNSLCRIKR   95 (302)
T ss_dssp             EEEETTEEEEEEGGGTTEEEEEETTSCSCEEEEE---EE--EEEEEECSSEEEEEEECC------CCSSCCSEEEEEEET
T ss_pred             EEEeCCEEEEEeCCCCceEEEEcCCCCCCEEccC---Cc--eeeEEEcCCEEEEEECCCCcccccceeccCCCeEEEEeC
Confidence            356777776654  34566666665444333322   11  24557889998877543              35666666


Q ss_pred             CCCCcccE---EEEEEcCCCCEEEEEe--C--CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC-CCcEEE
Q psy10953         83 NTGHSSWV---LSTAFTRDGKFFISAS--A--DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE-DKAVHM  154 (181)
Q Consensus        83 ~~~~~~~v---~~~~~s~~~~~l~~~~--~--d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i  154 (181)
                      .......+   ....|++++++|+-..  .  ...|+..++..........+..    .+++|+++.|+-.+. ...|..
T Consensus        96 dg~~~~~l~~~~~~~~s~~g~~Iy~~~~~~~~~~~Iy~~~~dGs~~~~lt~~~~----~~~~~~g~~iy~t~~g~~~Iy~  171 (302)
T 3s25_A           96 NGHGSTVLDPDPCIYASLIGNYIYYLHYDTQTATSLYRIRIDGEEKKKIKNHYL----FTCNTSDRYFYYNNPKNGQLYR  171 (302)
T ss_dssp             TSCCCEEEECSCEEEEEEETTEEEEEEESSSSCEEEEEEETTSCCCEEEESSCC----CCSEEETTEEEEECTTTCCEEE
T ss_pred             CCCcceEeecCCccEEEEeCCEEEEEeecCCCCceEEEEECCCCCeEEEeCCCc----eEeeEECCEEEEEeCCCceEEE
Confidence            65442221   1236788888877665  2  3456666665433222222221    456888988876665 567877


Q ss_pred             EeCCCCeeEEEcC
Q psy10953        155 YSYKPEEEVEVNG  167 (181)
Q Consensus       155 ~~~~~~~~~~~~~  167 (181)
                      -++..+.+..+..
T Consensus       172 ~~l~g~~~~~l~~  184 (302)
T 3s25_A          172 YDTASQSEALFYD  184 (302)
T ss_dssp             EETTTTEEEEEEC
T ss_pred             EECCCCCEEEEeC
Confidence            7776665544443

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=96.47  E-value=0.11  Score=37.98  Aligned_cols=136  Identities=14%  Similarity=0.194  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCc--eEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGK--FTLSIAYSTDGHWIASGALD-----GIINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~~~~~d-----~~v~i~d~~~~~---   86 (181)
                      ++++++.|+.+     ..+.+||..+++....-.....  ....+.+  +++.++.|+.+     ..+..||+.+..   
T Consensus       112 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  189 (301)
T 2vpj_A          112 GDMIYVSGGFDGSRRHTSMERYDPNIDQWSMLGDMQTAREGAGLVVA--SGVIYCLGGYDGLNILNSVEKYDPHTGHWTN  189 (301)
T ss_dssp             TTEEEEECCBCSSCBCCEEEEEETTTTEEEEEEECSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcccCCCcccceEEEEcCCCCeEEECCCCCCCcccceEEEE--CCEEEEECCCCCCcccceEEEEeCCCCcEEe
Confidence            67777777654     3588899888776543322111  1112222  66777777654     468888876431   


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCce--eeeeecCCcEEEEEEccCCCEEEEEcCC-----
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASAD-----HTVRVWNFARREN--MHTFKHADQVWCVCVAPDGDKFVSVGED-----  149 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d-----  149 (181)
                           ...........+++.++.|+.+     ..+.+||+.+.+=  +...+....-.++ ..-+++.++.|+.+     
T Consensus       190 ~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~~~  268 (301)
T 2vpj_A          190 VTPMATKRSGAGVALLNDHIYVVGGFDGTAHLSSVEAYNIRTDSWTTVTSMTTPRCYVGA-TVLRGRLYAIAGYDGNSLL  268 (301)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCSSSBE
T ss_pred             CCCCCcccccceEEEECCEEEEEeCCCCCcccceEEEEeCCCCcEEECCCCCCcccceeE-EEECCEEEEEcCcCCCccc
Confidence                 0000011112256777777754     4688999876542  2112211111122 22367777777754     


Q ss_pred             CcEEEEeCCCC
Q psy10953        150 KAVHMYSYKPE  160 (181)
Q Consensus       150 ~~v~i~~~~~~  160 (181)
                      ..+.+||..+.
T Consensus       269 ~~v~~yd~~~~  279 (301)
T 2vpj_A          269 SSIECYDPIID  279 (301)
T ss_dssp             EEEEEEETTTT
T ss_pred             ccEEEEcCCCC
Confidence            35778887654

>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}

Probab=96.47  E-value=0.17  Score=37.71  Aligned_cols=136  Identities=12%  Similarity=0.154  Sum_probs=76.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE-EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC--------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL-EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------   83 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~-~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~--------   83 (181)
                      .++.+.+.+++..++++ .++.|.. ..+.++. ..........+..+.+.+++..++.+...+..+-.|..        
T Consensus       123 ~~~~i~~~~~~~~~~~~-~~g~v~~-S~DgG~tW~~~~~~~~~~~~~~~~~~~~~~~~~g~~G~~~~S~d~gG~tW~~~~  200 (327)
T 2xbg_A          123 SPRLIKALGNGSAEMIT-NVGAIYR-TKDSGKNWQALVQEAIGVMRNLNRSPSGEYVAVSSRGSFYSTWEPGQTAWEPHN  200 (327)
T ss_dssp             CEEEEEEEETTEEEEEE-TTCCEEE-ESSTTSSEEEEECSCCCCEEEEEECTTSCEEEEETTSSEEEEECTTCSSCEEEE
T ss_pred             CeEEEEEECCCCEEEEe-CCccEEE-EcCCCCCCEEeecCCCcceEEEEEcCCCcEEEEECCCcEEEEeCCCCCceeECC
Confidence            45778877777766655 4554422 2233332 22222222345678899998877666544333333421        


Q ss_pred             CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-----cCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         84 TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-----HADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        84 ~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      ......+..++++++++.++. +.++.+++.+...++.-....     ....+..+++.++++.++++. ++.+
T Consensus       201 ~~~~~~~~~~~~~~~g~~~~~-~~~G~~~~s~~D~G~tW~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~-~g~i  272 (327)
T 2xbg_A          201 RTTSRRLHNMGFTPDGRLWMI-VNGGKIAFSDPDNSENWGELLSPLRRNSVGFLDLAYRTPNEVWLAGG-AGAL  272 (327)
T ss_dssp             CCSSSCEEEEEECTTSCEEEE-ETTTEEEEEETTEEEEECCCBCTTSSCCSCEEEEEESSSSCEEEEES-TTCE
T ss_pred             CCCCCccceeEECCCCCEEEE-eCCceEEEecCCCCCeeEeccCCcccCCcceEEEEecCCCEEEEEeC-CCeE
Confidence            123345778889999886654 456777766322122211111     123588899998887777655 5555

>2ism_A Putative oxidoreductase; BL41XU spring-8, bladed beta-propellor, glucose dehydrogenas structural genomics, NPPSFA; 1.90A {Thermus thermophilus}

Probab=96.29  E-value=0.24  Score=37.45  Aligned_cols=58  Identities=17%  Similarity=0.257  Sum_probs=38.1

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCce------eeee-ecCCcEEEEEEccCCCEEEEEcC
Q psy10953         90 VLSTAFTRDGKFFISASADHTVRVWNFARREN------MHTF-KHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~------~~~~-~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      ...++| .+|+++++....+.|...++.....      ...+ .....+..+++.|||..+++...
T Consensus       270 p~G~~~-~~G~l~v~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~~~~  334 (352)
T 2ism_A          270 PGNLAF-FRGDLYVAGLRGQALLRLVLEGERGRWRVLRVETALSGFGRLREVQVGPDGALYVTTSN  334 (352)
T ss_dssp             EEEEEE-ETTEEEEEETTTTEEEEEEEEEETTEEEEEEEEEEEESSCCEEEEEECTTSCEEEEECS
T ss_pred             CcceEE-ECCEEEEEECCCCEEEEEEECCCCcceeecchheecccCCCeeEEEECCCCcEEEEEeC
Confidence            456666 5677777766777888887754321      1112 22357899999999988777643

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=96.19  E-value=0.14  Score=37.34  Aligned_cols=135  Identities=16%  Similarity=0.229  Sum_probs=72.4

Q ss_pred             CCCEEEEEeCCC-----cEEEEeCCCCcEEEEEecCCc--eEEEEEECCCCCEEEEeeCC-------CcEEEEeCCCCC-
Q psy10953         22 DDKYVLSGSQSG-----KINLYGVETGKLEQIFDTRGK--FTLSIAYSTDGHWIASGALD-------GIINIFDANTGH-   86 (181)
Q Consensus        22 ~g~~l~~~~~d~-----~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~~~~~d-------~~v~i~d~~~~~-   86 (181)
                      ++++++.|+.++     .+..||..+++....-.....  ....+.+  +++.++.|+.+       ..+..||+.+.. 
T Consensus       108 ~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W  185 (302)
T 2xn4_A          108 NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFHVAPMNTRRSSVGVGVV--GGLLYAVGGYDVASRQCLSTVECYNATTNEW  185 (302)
T ss_dssp             TTEEEEEEEECSSCEEEEEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEETTTTEECCCEEEEETTTTEE
T ss_pred             CCEEEEEcCCCCCccCceEEEEeCCCCeEeecCCCCCcccCceEEEE--CCEEEEEeCCCCCCCccccEEEEEeCCCCcE
Confidence            677777777653     477888887765543221111  1111222  56666666542       457888876431 


Q ss_pred             --------c-ccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC-
Q psy10953         87 --------S-SWVLSTAFTRDGKFFISASAD-----HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED-  149 (181)
Q Consensus        87 --------~-~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  149 (181)
                              . ..-..+  ..+++.++.|+.+     ..+.+||+.+.+  .+......-.-.++ ...+++.++.|+.+ 
T Consensus       186 ~~~~~~p~~r~~~~~~--~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~~~i~v~GG~~~  262 (302)
T 2xn4_A          186 TYIAEMSTRRSGAGVG--VLNNLLYAVGGHDGPLVRKSVEVYDPTTNAWRQVADMNMCRRNAGV-CAVNGLLYVVGGDDG  262 (302)
T ss_dssp             EEECCCSSCCBSCEEE--EETTEEEEECCBSSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCS
T ss_pred             EECCCCccccccccEE--EECCEEEEECCCCCCcccceEEEEeCCCCCEeeCCCCCCccccCeE-EEECCEEEEECCcCC
Confidence                    0 011112  2256777777654     368899987653  12111111111112 22367777777754 


Q ss_pred             ----CcEEEEeCCCCe
Q psy10953        150 ----KAVHMYSYKPEE  161 (181)
Q Consensus       150 ----~~v~i~~~~~~~  161 (181)
                          ..+.+||..+.+
T Consensus       263 ~~~~~~v~~yd~~~~~  278 (302)
T 2xn4_A          263 SCNLASVEYYNPTTDK  278 (302)
T ss_dssp             SSBCCCEEEEETTTTE
T ss_pred             CcccccEEEEcCCCCe
Confidence                348888887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.81  E-value=0.22  Score=36.38  Aligned_cols=136  Identities=14%  Similarity=0.222  Sum_probs=72.2

Q ss_pred             CCCEEEEEeCC----CcEEEEeCCCCcEEEEEecCCc--eEEEEEECCCCCEEEEeeCC------CcEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS----GKINLYGVETGKLEQIFDTRGK--FTLSIAYSTDGHWIASGALD------GIINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~~~~~d------~~v~i~d~~~~~---   86 (181)
                      ++++++.|+.+    ..+..||..+++....-.....  ....+.+  +++.++.|+.+      ..+.+||+.+..   
T Consensus        55 ~~~lyv~GG~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~  132 (306)
T 3ii7_A           55 DNVVYILGGSQLFPIKRMDCYNVVKDSWYSKLGPPTPRDSLAACAA--EGKIYTSGGSEVGNSALYLFECYDTRTESWHT  132 (306)
T ss_dssp             TTEEEEECCBSSSBCCEEEEEETTTTEEEEEECCSSCCBSCEEEEE--TTEEEEECCBBTTBSCCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEeCCCCCCcceEEEEeCCCCeEEECCCCCccccceeEEEE--CCEEEEECCCCCCCcEeeeEEEEeCCCCceEe
Confidence            67777787755    5688899988876544322111  1112222  56777777755      468888876431   


Q ss_pred             -----cccEEEEEEcCCCCEEEEEeC---------CCcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC-
Q psy10953         87 -----SSWVLSTAFTRDGKFFISASA---------DHTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED-  149 (181)
Q Consensus        87 -----~~~v~~~~~s~~~~~l~~~~~---------d~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  149 (181)
                           .......+...+++.++.|+.         -..+.+||+.+.+  .+...+..-.-.+++ .-+++.++.|+.+ 
T Consensus       133 ~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i~v~GG~~~  211 (306)
T 3ii7_A          133 KPSMLTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCPMIEARKNHGLV-FVKDKIFAVGGQNG  211 (306)
T ss_dssp             ECCCSSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCEET
T ss_pred             CCCCcCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCCccchhhcceEE-EECCEEEEEeCCCC
Confidence                 000001111236677776653         3458889887653  121121111111222 2266677776643 


Q ss_pred             ----CcEEEEeCCCC
Q psy10953        150 ----KAVHMYSYKPE  160 (181)
Q Consensus       150 ----~~v~i~~~~~~  160 (181)
                          ..+.+||..+.
T Consensus       212 ~~~~~~~~~yd~~~~  226 (306)
T 3ii7_A          212 LGGLDNVEYYDIKLN  226 (306)
T ss_dssp             TEEBCCEEEEETTTT
T ss_pred             CCCCceEEEeeCCCC
Confidence                45788887654

>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}

Probab=95.72  E-value=0.31  Score=35.61  Aligned_cols=135  Identities=14%  Similarity=0.133  Sum_probs=72.8

Q ss_pred             CCCEEEEEeCC------CcEEEEeCCCCcEEEEEecCC--ceEEEEEECCCCCEEEEeeC---------CCcEEEEeCCC
Q psy10953         22 DDKYVLSGSQS------GKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGAL---------DGIINIFDANT   84 (181)
Q Consensus        22 ~g~~l~~~~~d------~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~---------d~~v~i~d~~~   84 (181)
                      ++++++.|+.+      ..+.+||..+++....-....  .....+.+  +++.++.|+.         -..+..||+.+
T Consensus       101 ~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~  178 (306)
T 3ii7_A          101 EGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPSMLTQRCSHGMVEA--NGLIYVCGGSLGNNVSGRVLNSCEVYDPAT  178 (306)
T ss_dssp             TTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEECCEESCTTTCEECCCEEEEETTT
T ss_pred             CCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCCCcCCcceeEEEEE--CCEEEEECCCCCCCCcccccceEEEeCCCC
Confidence            67777787765      458899998877554322111  11112222  5666666653         34588888864


Q ss_pred             CC--------cccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCc--eeeeeecC-CcEEEEEEccCCCEEEEEcC
Q psy10953         85 GH--------SSWVLSTAFTRDGKFFISASAD-----HTVRVWNFARRE--NMHTFKHA-DQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        85 ~~--------~~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~--~~~~~~~~-~~v~~~~~sp~g~~l~~~~~  148 (181)
                      ..        .......+..-+++.++.|+.+     ..+.+||+.+.+  .+...+.. .....+.+  +++.++.|+.
T Consensus       179 ~~W~~~~~~p~~r~~~~~~~~~~~i~v~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~i~v~GG~  256 (306)
T 3ii7_A          179 ETWTELCPMIEARKNHGLVFVKDKIFAVGGQNGLGGLDNVEYYDIKLNEWKMVSPMPWKGVTVKCAAV--GSIVYVLAGF  256 (306)
T ss_dssp             TEEEEECCCSSCCBSCEEEEETTEEEEECCEETTEEBCCEEEEETTTTEEEECCCCSCCBSCCEEEEE--TTEEEEEECB
T ss_pred             CeEEECCCccchhhcceEEEECCEEEEEeCCCCCCCCceEEEeeCCCCcEEECCCCCCCccceeEEEE--CCEEEEEeCc
Confidence            31        0000011112256777776643     368889987653  22222211 11222222  6777788874


Q ss_pred             C-----CcEEEEeCCCC
Q psy10953        149 D-----KAVHMYSYKPE  160 (181)
Q Consensus       149 d-----~~v~i~~~~~~  160 (181)
                      +     +.+.+||..+.
T Consensus       257 ~~~~~~~~~~~yd~~~~  273 (306)
T 3ii7_A          257 QGVGRLGHILEYNTETD  273 (306)
T ss_dssp             CSSSBCCEEEEEETTTT
T ss_pred             CCCeeeeeEEEEcCCCC
Confidence            3     46888888765

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=95.67  E-value=0.22  Score=36.63  Aligned_cols=138  Identities=11%  Similarity=0.138  Sum_probs=71.3

Q ss_pred             CCCEEEEEeCC--------CcEEEEeCCCCcEEEEEecCCc-eEEEEEECCCCCEEEEeeC------CCcEEEEeCCCCC
Q psy10953         22 DDKYVLSGSQS--------GKINLYGVETGKLEQIFDTRGK-FTLSIAYSTDGHWIASGAL------DGIINIFDANTGH   86 (181)
Q Consensus        22 ~g~~l~~~~~d--------~~i~~~d~~~~~~~~~~~~~~~-~~~~~~~s~d~~~l~~~~~------d~~v~i~d~~~~~   86 (181)
                      +++.++.|+.+        ..+..||..+++....-..... ...++.. .+++.++.|+.      -+.+..||+.+..
T Consensus        98 ~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~  176 (315)
T 4asc_A           98 LNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDPLPYVVYGHTVLS-HMDLVYVIGGKGSDRKCLNKMCVYDPKKFE  176 (315)
T ss_dssp             TTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCTTSCBCCCEEEEETTTTE
T ss_pred             CCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCCCCCcccceeEEE-ECCEEEEEeCCCCCCcccceEEEEeCCCCe
Confidence            66777777642        3588899888765443221111 1111222 35667777765      2468888876421


Q ss_pred             --------cccEEEEEEcCCCCEEEEEeCCC-----cEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC--
Q psy10953         87 --------SSWVLSTAFTRDGKFFISASADH-----TVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED--  149 (181)
Q Consensus        87 --------~~~v~~~~~s~~~~~l~~~~~d~-----~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--  149 (181)
                              .......+..-+++.++.|+.++     .+.+||+.+.+  .+...+..-.-.+++ .-+++.++.|+.+  
T Consensus       177 W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~l~v~GG~~~~  255 (315)
T 4asc_A          177 WKELAPMQTARSLFGATVHDGRIIVAAGVTDTGLTSSAEVYSITDNKWAPFEAFPQERSSLSLV-SLVGTLYAIGGFATL  255 (315)
T ss_dssp             EEECCCCSSCCBSCEEEEETTEEEEEEEECSSSEEEEEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEEEEEEEE
T ss_pred             EEECCCCCCchhceEEEEECCEEEEEeccCCCCccceEEEEECCCCeEEECCCCCCcccceeEE-EECCEEEEECCcccc
Confidence                    00001111122667777777544     47888887653  221122111111222 2366777777753  


Q ss_pred             ------------CcEEEEeCCCCe
Q psy10953        150 ------------KAVHMYSYKPEE  161 (181)
Q Consensus       150 ------------~~v~i~~~~~~~  161 (181)
                                  +.+.+||..+.+
T Consensus       256 ~~~~~~~~~~~~~~v~~yd~~~~~  279 (315)
T 4asc_A          256 ETESGELVPTELNDIWRYNEEEKK  279 (315)
T ss_dssp             ECTTSCEEEEEEEEEEEEETTTTE
T ss_pred             CcCCccccccccCcEEEecCCCCh
Confidence                        236778876653

>1cru_A Protein (soluble quinoprotein glucose dehydrogena; beta-propeller, superbarrel; HET: PQQ; 1.50A {Acinetobacter calcoaceticus} SCOP: b.68.2.1 PDB: 1c9u_A* 1cq1_A* 1qbi_A

Probab=95.67  E-value=0.54  Score=36.97  Aligned_cols=93  Identities=15%  Similarity=0.316  Sum_probs=55.5

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCC----------------cccEEEEEEcC----CCCEEEEEeC--------
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANTGH----------------SSWVLSTAFTR----DGKFFISASA--------  107 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~----------------~~~v~~~~~s~----~~~~l~~~~~--------  107 (181)
                      ...++|.|+|+++++-...+.|.+++...+.                ......++|+|    ++.++++-+.        
T Consensus        29 P~~~a~~pdG~l~V~e~~gg~I~~~~~~~g~~~~~~~~~~~~~~~~g~~Gllgia~~Pdf~~~g~lYv~~s~~~~~~~~~  108 (454)
T 1cru_A           29 PHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPDFKNNPYIYISGTFKNPKSTDK  108 (454)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTTTTTSCEEEEEEEEECTTC--C
T ss_pred             ceEEEEcCCCcEEEEEcCCCEEEEEECCCCcEeEEecCCccccccCCCCceeEEEECCCcCcCCEEEEEEeccccCCCcc
Confidence            4589999999977765444567777653221                12345899999    4555555542        


Q ss_pred             ----CCcEEEEecCCC-------ceee-eeec--CCcEEEEEEccCCCEEEEEcC
Q psy10953        108 ----DHTVRVWNFARR-------ENMH-TFKH--ADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus       108 ----d~~i~v~d~~~~-------~~~~-~~~~--~~~v~~~~~sp~g~~l~~~~~  148 (181)
                          ...|.-|++...       +.+. .+..  ......++|.|||+++++.+.
T Consensus       109 ~~~~~~~v~r~~~~~~~~~~~~~~~i~~~~p~~~~H~~~~l~f~pDG~Lyv~~Gd  163 (454)
T 1cru_A          109 ELPNQTIIRRYTYNKSTDTLEKPVDLLAGLPSSKDHQSGRLVIGPDQKIYYTIGD  163 (454)
T ss_dssp             CSCEEEEEEEEEEETTTTEEEEEEEEEEEECCCSSCCEEEEEECTTSCEEEEECC
T ss_pred             ccccccEEEEEEECCCCCCcCCcEEEEEcCCCCCCCCCCeEeECCCCeEEEEECC
Confidence                124555554321       1111 1221  123678999999998887664

>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}

Probab=95.63  E-value=0.27  Score=35.79  Aligned_cols=137  Identities=12%  Similarity=0.136  Sum_probs=72.1

Q ss_pred             CCCCEEEEEeCC-----CcEEEEeCCCCc---EEEEEecCC--ceEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy10953         21 PDDKYVLSGSQS-----GKINLYGVETGK---LEQIFDTRG--KFTLSIAYSTDGHWIASGALD-----GIINIFDANTG   85 (181)
Q Consensus        21 ~~g~~l~~~~~d-----~~i~~~d~~~~~---~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~d-----~~v~i~d~~~~   85 (181)
                      .++++++.|+.+     ..+.+||..+++   ....-....  .....+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        61 ~~~~l~v~GG~~~~~~~~~~~~~d~~~~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~d~~~~  138 (301)
T 2vpj_A           61 LHDRIYVIGGYDGRSRLSSVECLDYTADEDGVWYSVAPMNVRRGLAGATTL--GDMIYVSGGFDGSRRHTSMERYDPNID  138 (301)
T ss_dssp             ETTEEEEECCBCSSCBCCCEEEEETTCCTTCCCEEECCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCEEEEEETTTT
T ss_pred             ECCEEEEEcCCCCCccCceEEEEECCCCCCCeeEECCCCCCCccceeEEEE--CCEEEEEcccCCCcccceEEEEcCCCC
Confidence            367777777755     368899988776   443322111  11112222  56777777643     36788887643


Q ss_pred             Cc--------ccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCce--eeeeecCCcEEEEEEccCCCEEEEEcCC-
Q psy10953         86 HS--------SWVLSTAFTRDGKFFISASAD-----HTVRVWNFARREN--MHTFKHADQVWCVCVAPDGDKFVSVGED-  149 (181)
Q Consensus        86 ~~--------~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d-  149 (181)
                      .=        ......+...+++.++.|+.+     ..+.+||+.+.+=  +...+..-.-.++ ..-+++.++.|+.+ 
T Consensus       139 ~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~  217 (301)
T 2vpj_A          139 QWSMLGDMQTAREGAGLVVASGVIYCLGGYDGLNILNSVEKYDPHTGHWTNVTPMATKRSGAGV-ALLNDHIYVVGGFDG  217 (301)
T ss_dssp             EEEEEEECSSCCBSCEEEEETTEEEEECCBCSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEE-EEETTEEEEECCBCS
T ss_pred             eEEECCCCCCCcccceEEEECCEEEEECCCCCCcccceEEEEeCCCCcEEeCCCCCcccccceE-EEECCEEEEEeCCCC
Confidence            10        000011112266777777654     4588888876532  1111111111112 22356677777653 


Q ss_pred             ----CcEEEEeCCCC
Q psy10953        150 ----KAVHMYSYKPE  160 (181)
Q Consensus       150 ----~~v~i~~~~~~  160 (181)
                          +.+.+||..+.
T Consensus       218 ~~~~~~v~~yd~~~~  232 (301)
T 2vpj_A          218 TAHLSSVEAYNIRTD  232 (301)
T ss_dssp             SSBCCCEEEEETTTT
T ss_pred             CcccceEEEEeCCCC
Confidence                46888887654

>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}

Probab=95.32  E-value=0.41  Score=34.88  Aligned_cols=135  Identities=15%  Similarity=0.223  Sum_probs=70.6

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCCc--eEEEEEECCCCCEEEEeeCCC-----cEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRGK--FTLSIAYSTDGHWIASGALDG-----IINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~s~d~~~l~~~~~d~-----~v~i~d~~~~~---   86 (181)
                      ++++++.|+.+     ..+..||..+.+....-.....  ....+.+  +++.++.|+.++     .+.+||+.+..   
T Consensus        61 ~~~lyv~GG~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~d~~~~~W~~  138 (302)
T 2xn4_A           61 AGLVFAVGGFNGSLRVRTVDSYDPVKDQWTSVANMRDRRSTLGAAVL--NGLLYAVGGFDGSTGLSSVEAYNIKSNEWFH  138 (302)
T ss_dssp             TTEEEEESCBCSSSBCCCEEEEETTTTEEEEECCCSSCCBSCEEEEE--TTEEEEEEEECSSCEEEEEEEEETTTTEEEE
T ss_pred             CCEEEEEeCcCCCccccceEEECCCCCceeeCCCCCccccceEEEEE--CCEEEEEcCCCCCccCceEEEEeCCCCeEee
Confidence            67777777754     3588899887775543222111  1112222  567777776553     57778876421   


Q ss_pred             ------cccEEEEEEcCCCCEEEEEeCC-------CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC--
Q psy10953         87 ------SSWVLSTAFTRDGKFFISASAD-------HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED--  149 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~~~d-------~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d--  149 (181)
                            ...-.+++ ..+++.++.|+.+       ..+.+||+.+.+  .+...+..-.-.+++ .-+++.++.|+.+  
T Consensus       139 ~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~iyv~GG~~~~  216 (302)
T 2xn4_A          139 VAPMNTRRSSVGVG-VVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAEMSTRRSGAGVG-VLNNLLYAVGGHDGP  216 (302)
T ss_dssp             ECCCSSCCBSCEEE-EETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEEEEECCBSSS
T ss_pred             cCCCCCcccCceEE-EECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCCCccccccccEE-EECCEEEEECCCCCC
Confidence                  00001111 2356777766542       358888887653  221222111111222 2266777777654  


Q ss_pred             ---CcEEEEeCCCC
Q psy10953        150 ---KAVHMYSYKPE  160 (181)
Q Consensus       150 ---~~v~i~~~~~~  160 (181)
                         +.+.+||..+.
T Consensus       217 ~~~~~~~~yd~~~~  230 (302)
T 2xn4_A          217 LVRKSVEVYDPTTN  230 (302)
T ss_dssp             SBCCCEEEEETTTT
T ss_pred             cccceEEEEeCCCC
Confidence               46888887654

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=95.28  E-value=0.35  Score=35.43  Aligned_cols=135  Identities=14%  Similarity=0.168  Sum_probs=72.4

Q ss_pred             CCCEEEEEeCC-----CcEEEEeCCCCcEEEEEecCC--ceEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCCC---
Q psy10953         22 DDKYVLSGSQS-----GKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGALD-----GIINIFDANTGH---   86 (181)
Q Consensus        22 ~g~~l~~~~~d-----~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~d-----~~v~i~d~~~~~---   86 (181)
                      ++++++.|+.+     ..+..||..+++....-....  .....+.+  +++.++.|+.+     +.+..||+.+..   
T Consensus       121 ~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~  198 (308)
T 1zgk_A          121 DGHIYAVGGSHGCIHHNSVERYEPERDEWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRM  198 (308)
T ss_dssp             TTEEEEECCEETTEECCCEEEEETTTTEEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEE
T ss_pred             CCEEEEEcCCCCCcccccEEEECCCCCeEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEee
Confidence            67777777643     358889988776544322111  11112222  56777777654     468888876421   


Q ss_pred             ------c-ccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCce--eeeeecCCcEEEEEEccCCCEEEEEcCC---
Q psy10953         87 ------S-SWVLSTAFTRDGKFFISASAD-----HTVRVWNFARREN--MHTFKHADQVWCVCVAPDGDKFVSVGED---  149 (181)
Q Consensus        87 ------~-~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~d---  149 (181)
                            . ..-..+.+  +++.++.++.+     ..+.+||+.+.+=  +...+..-.-.+++. -+++.++.|+.+   
T Consensus       199 ~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~i~v~GG~~~~~  275 (308)
T 1zgk_A          199 ITAMNTIRSGAGVCVL--HNCIYAAGGYDGQDQLNSVERYDVETETWTFVAPMKHRRSALGITV-HQGRIYVLGGYDGHT  275 (308)
T ss_dssp             CCCCSSCCBSCEEEEE--TTEEEEECCBCSSSBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCBCSSC
T ss_pred             CCCCCCccccceEEEE--CCEEEEEeCCCCCCccceEEEEeCCCCcEEECCCCCCCccceEEEE-ECCEEEEEcCcCCCc
Confidence                  0 01112222  67777777654     4688999876531  111221111112222 266777777743   


Q ss_pred             --CcEEEEeCCCCe
Q psy10953        150 --KAVHMYSYKPEE  161 (181)
Q Consensus       150 --~~v~i~~~~~~~  161 (181)
                        ..+.+||..+.+
T Consensus       276 ~~~~v~~yd~~~~~  289 (308)
T 1zgk_A          276 FLDSVECYDPDTDT  289 (308)
T ss_dssp             BCCEEEEEETTTTE
T ss_pred             ccceEEEEcCCCCE
Confidence              457788886653

>2g8s_A Glucose/sorbosone dehydrogenases; bladed beta-propellor, pyrolloquinoline quinone (PQQ), quinoprotein, sugar binding protein; HET: MSE; 1.50A {Escherichia coli K12}

Probab=95.14  E-value=0.75  Score=34.73  Aligned_cols=59  Identities=25%  Similarity=0.285  Sum_probs=39.4

Q ss_pred             cEEEEEEcC-------CCCEEEEEeCCCcEEEEecCCCceeeeee----cCCcEEEEEEccCCCEEEEEc
Q psy10953         89 WVLSTAFTR-------DGKFFISASADHTVRVWNFARRENMHTFK----HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        89 ~v~~~~~s~-------~~~~l~~~~~d~~i~v~d~~~~~~~~~~~----~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      .+..++|.+       +|+++++.-..+.|...++..++......    ....+..+++.|||..+++..
T Consensus       272 ap~G~~~y~g~~fp~~~g~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~rp~~v~~~pdG~lyv~td  341 (353)
T 2g8s_A          272 AVSGMAFYNSDKFPQWQQKLFIGALKDKDVIVMSVNGDKVTEDGRILTDRGQRIRDVRTGPDGYLYVLTD  341 (353)
T ss_dssp             CEEEEEEECCSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEESGGGCCCEEEEEECTTSCEEEEEC
T ss_pred             CcceeEEECCccCcccCCcEEEEEccCCEEEEEEeCCCeEeeeEEcccCCCCceeEEEECCCCcEEEEEe
Confidence            355667753       57777777677888888877554332211    234789999999998766543

>3das_A Putative oxidoreductase; aldose sugar dehydrogenase, beta propellor, PQQ, SGDH; HET: MSE ARA PQQ; 1.60A {Streptomyces coelicolor}

Probab=95.12  E-value=0.67  Score=35.16  Aligned_cols=92  Identities=16%  Similarity=0.256  Sum_probs=56.6

Q ss_pred             EEEEEECCCCCEEEEeeCCCcEEEEeCCCCC--------------cccEEEEEEcCC----CCEEEEEe--CCCcEEEEe
Q psy10953         56 TLSIAYSTDGHWIASGALDGIINIFDANTGH--------------SSWVLSTAFTRD----GKFFISAS--ADHTVRVWN  115 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~--------------~~~v~~~~~s~~----~~~l~~~~--~d~~i~v~d  115 (181)
                      ...++|.|||.++++--..|.|++++...+.              ......++++|+    +.++++-+  .+..|.-|.
T Consensus        34 P~~ia~~pdG~llVter~~G~I~~v~~~~g~~~~v~~~~~v~~~g~~GllGia~~Pdf~~~g~lYv~yt~~~~~~v~R~~  113 (347)
T 3das_A           34 PWGLAPLPGGDLLVSSRDEATITRVDAKTGRKTELGEVPGVSPSGEGGLLGIALSPDYASDHMVYAYFTSASDNRIVRML  113 (347)
T ss_dssp             EEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCBTTBSEEEEEECTTHHHHCEEEEEEECSSSEEEEEEE
T ss_pred             ceEEEEcCCCcEEEEEecCCEEEEEECCCCcEeeecccCceeecCCCCceeeEeccccccCCEEEEEEecCCCCEEEEEE
Confidence            4689999999977766558889888764332              123568899995    55555432  334555555


Q ss_pred             cCCC----------cee-eeeecC--CcEEEEEEccCCCEEEEEc
Q psy10953        116 FARR----------ENM-HTFKHA--DQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus       116 ~~~~----------~~~-~~~~~~--~~v~~~~~sp~g~~l~~~~  147 (181)
                      +...          +.+ ..+...  ..-..++|.|||.++++.+
T Consensus       114 ~~~~~~~~~~~~~~~~i~~~~p~~~~H~g~~l~fgpDG~Lyvt~G  158 (347)
T 3das_A          114 YDEKKPSGEQLGAPDTVFRGIPKGVIHNGGRIAFGPDKMLYAGTG  158 (347)
T ss_dssp             BCTTSCTTCCBCCCEEEEEEECCCSSCCCCCEEECTTSCEEEECB
T ss_pred             eCCCCcccccCCCcEEEEEcCCCCCCccCccccCCCCCCEEEEEC
Confidence            4431          111 112211  1234699999998888765

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=95.01  E-value=0.61  Score=34.26  Aligned_cols=138  Identities=15%  Similarity=0.246  Sum_probs=70.7

Q ss_pred             CCCEEEEEeCC-------CcEEEEeCCCCcEEEEEecCCce-EEEEEECCCCCEEEEeeC------CCcEEEEeCCCCC-
Q psy10953         22 DDKYVLSGSQS-------GKINLYGVETGKLEQIFDTRGKF-TLSIAYSTDGHWIASGAL------DGIINIFDANTGH-   86 (181)
Q Consensus        22 ~g~~l~~~~~d-------~~i~~~d~~~~~~~~~~~~~~~~-~~~~~~s~d~~~l~~~~~------d~~v~i~d~~~~~-   86 (181)
                      ++++++.|+.+       ..+.+||..+.+....-...... -.++.. .+++.++.|+.      -+.+.+||+.+.. 
T Consensus       109 ~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W  187 (318)
T 2woz_A          109 DDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVYGHNVIS-HNGMIYCLGGKTDDKKCTNRVFIYNPKKGDW  187 (318)
T ss_dssp             TTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECCCSSCEESCEEEE-ETTEEEEECCEESSSCBCCCEEEEETTTTEE
T ss_pred             CCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCCCCCcccccEEEE-ECCEEEEEcCCCCCCCccceEEEEcCCCCEE
Confidence            66777777754       24778888877665432211111 011222 36676677654      2458889886431 


Q ss_pred             -------cccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcCC---
Q psy10953         87 -------SSWVLSTAFTRDGKFFISASAD-----HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGED---  149 (181)
Q Consensus        87 -------~~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~d---  149 (181)
                             .......+..-+++.++.|+.+     ..+.+||+.+.+  .+...+..-.-.++ ...+++.++.|+.+   
T Consensus       188 ~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~-~~~~~~i~v~GG~~~~~  266 (318)
T 2woz_A          188 KDLAPMKTPRSMFGVAIHKGKIVIAGGVTEDGLSASVEAFDLKTNKWEVMTEFPQERSSISL-VSLAGSLYAIGGFAMIQ  266 (318)
T ss_dssp             EEECCCSSCCBSCEEEEETTEEEEEEEEETTEEEEEEEEEETTTCCEEECCCCSSCCBSCEE-EEETTEEEEECCBCCBC
T ss_pred             EECCCCCCCcccceEEEECCEEEEEcCcCCCCccceEEEEECCCCeEEECCCCCCcccceEE-EEECCEEEEECCeeccC
Confidence                   0000001112356777777643     346788887643  22222211111122 22356777777643   


Q ss_pred             -----------CcEEEEeCCCCe
Q psy10953        150 -----------KAVHMYSYKPEE  161 (181)
Q Consensus       150 -----------~~v~i~~~~~~~  161 (181)
                                 +.+.+||..+.+
T Consensus       267 ~~~~~~~~~~~~~v~~yd~~~~~  289 (318)
T 2woz_A          267 LESKEFAPTEVNDIWKYEDDKKE  289 (318)
T ss_dssp             ----CCBCCBCCCEEEEETTTTE
T ss_pred             CCCceeccceeeeEEEEeCCCCE
Confidence                       357788887653

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=94.86  E-value=0.5  Score=37.31  Aligned_cols=38  Identities=16%  Similarity=0.184  Sum_probs=29.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCC-EEEEEeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDK-YVLSGSQSGKINLYGVE   41 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~-~l~~~~~d~~i~~~d~~   41 (181)
                      +..++.+....+.|+|.|||. +++++...|.|++++..
T Consensus         6 v~~va~gL~~P~~~a~~pdG~~rl~V~er~G~i~~~~~~   44 (463)
T 2wg3_C            6 IQEVVSGLRQPVGALHSGDGSQRLFILEKEGYVKILTPE   44 (463)
T ss_dssp             EEEEEEEESSEEEEECCSSSSCCEEEEETTTEEEEECTT
T ss_pred             EEEeccCCCCceEEEECCCCCeEEEEEeCCceEEEEeCC
Confidence            445555666779999999996 56667788999999754

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=94.78  E-value=0.27  Score=37.24  Aligned_cols=103  Identities=15%  Similarity=0.151  Sum_probs=66.5

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEE--CC-CCCEEEEe-eCCCcEEEEeCCCCCcccEEE-----
Q psy10953         24 KYVLSGSQSGKINLYGVETGKLEQIFDTR--GKFTLSIAY--ST-DGHWIASG-ALDGIINIFDANTGHSSWVLS-----   92 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~--s~-d~~~l~~~-~~d~~v~i~d~~~~~~~~v~~-----   92 (181)
                      ..++.++.||.|.-+|.++|+..-.+...  ...+ ...-  .+ ++..++.. ..||.++.++..++...+...     
T Consensus        11 ~~V~v~t~dG~l~Ald~~tG~~~W~~~~~~~~p~~-~~~~~~~~~~~~~~vv~p~~dG~l~a~~~~~G~~~~~~~~~~lv   89 (339)
T 2be1_A           11 DILIAADVEGGLHAVDRRNGHIIWSIEPENFQPLI-EIQEPSRLETYETLIIEPFGDGNIYYFNAHQGLQKLPLSIRQLV   89 (339)
T ss_dssp             EEEEEEETTSCEEEEETTTTEEEEEECGGGSCCSE-ECCCSCTTTSSEEEEECCSTTTEEEEEETTTEEEEEEEEHHHHH
T ss_pred             CEEEEEeCCCeEEEEECCCCcEEEEecCCccCCcE-EecCCccccCCcEEEEEECCCCEEEEEECCCCcEEeeeccccce
Confidence            46788899999999999999987766543  1222 1110  01 22333333 578999988887653221111     


Q ss_pred             ----EEEc-----------CCCCEEEEEeCCCcEEEEecCCCceeeeeec
Q psy10953         93 ----TAFT-----------RDGKFFISASADHTVRVWNFARRENMHTFKH  127 (181)
Q Consensus        93 ----~~~s-----------~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~  127 (181)
                          +..+           ..+..+.+++.++.++-.|+++++.+.++..
T Consensus        90 ~~SP~~~~~~pvv~~~~~~~~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~  139 (339)
T 2be1_A           90 STSPLHLKTNIVVNDSGKIVEDEKVYTGSMRTIMYTINMLNGEIISAFGP  139 (339)
T ss_dssp             TTCSEEEECC----------CCEEEEECEEEEEEEEEETTTCCEEEEEST
T ss_pred             eccccccCCCceeecccccccCCEEEEEecCCEEEEEECCCCcEEEEEec
Confidence                1110           0455678899999999999999999888763

>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A

Probab=94.48  E-value=0.56  Score=34.32  Aligned_cols=134  Identities=15%  Similarity=0.173  Sum_probs=70.7

Q ss_pred             CCCEEEEEeC----C-----CcEEEEeCCCCcEEEEEecCC--ceEEEEEECCCCCEEEEeeCC-----CcEEEEeCCCC
Q psy10953         22 DDKYVLSGSQ----S-----GKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGALD-----GIINIFDANTG   85 (181)
Q Consensus        22 ~g~~l~~~~~----d-----~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~d-----~~v~i~d~~~~   85 (181)
                      ++++++.|+.    +     ..+.+||..+.+....-....  .....+.+  +++.++.|+.+     ..+.+||+.+.
T Consensus        70 ~~~lyv~GG~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~  147 (308)
T 1zgk_A           70 GGLLYAVGGRNNSPDGNTDSSALDCYNPMTNQWSPCAPMSVPRNRIGVGVI--DGHIYAVGGSHGCIHHNSVERYEPERD  147 (308)
T ss_dssp             TTEEEEECCEEEETTEEEECCCEEEEETTTTEEEECCCCSSCCBTCEEEEE--TTEEEEECCEETTEECCCEEEEETTTT
T ss_pred             CCEEEEECCCcCCCCCCeecceEEEECCCCCeEeECCCCCcCccccEEEEE--CCEEEEEcCCCCCcccccEEEECCCCC
Confidence            6777777765    2     368889988776544322111  11112222  56777776643     46788887642


Q ss_pred             C----------cccEEEEEEcCCCCEEEEEeCC-----CcEEEEecCCCce--eeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         86 H----------SSWVLSTAFTRDGKFFISASAD-----HTVRVWNFARREN--MHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        86 ~----------~~~v~~~~~s~~~~~l~~~~~d-----~~i~v~d~~~~~~--~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      .          ...-..+.+  +++.++.|+.+     ..+.+||+.+.+=  +...+..-.-.+++. -+++.++.|+.
T Consensus       148 ~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~~-~~~~iyv~GG~  224 (308)
T 1zgk_A          148 EWHLVAPMLTRRIGVGVAVL--NRLLYAVGGFDGTNRLNSAECYYPERNEWRMITAMNTIRSGAGVCV-LHNCIYAAGGY  224 (308)
T ss_dssp             EEEECCCCSSCCBSCEEEEE--TTEEEEECCBCSSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEEE-ETTEEEEECCB
T ss_pred             eEeECCCCCccccceEEEEE--CCEEEEEeCCCCCCcCceEEEEeCCCCeEeeCCCCCCccccceEEE-ECCEEEEEeCC
Confidence            1          001111222  66777777654     4588888876531  111111111112222 26667777765


Q ss_pred             C-----CcEEEEeCCCC
Q psy10953        149 D-----KAVHMYSYKPE  160 (181)
Q Consensus       149 d-----~~v~i~~~~~~  160 (181)
                      +     +.+.+||+.+.
T Consensus       225 ~~~~~~~~v~~yd~~~~  241 (308)
T 1zgk_A          225 DGQDQLNSVERYDVETE  241 (308)
T ss_dssp             CSSSBCCCEEEEETTTT
T ss_pred             CCCCccceEEEEeCCCC
Confidence            4     56888887554

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=94.00  E-value=0.96  Score=33.73  Aligned_cols=133  Identities=8%  Similarity=-0.010  Sum_probs=64.8

Q ss_pred             CcEEEEeCCCCcEEEEEecCC--ceEEEEEECCCCCEEEEeeC------CCcEEEEeC--CCC-------C---cccEEE
Q psy10953         33 GKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGAL------DGIINIFDA--NTG-------H---SSWVLS   92 (181)
Q Consensus        33 ~~i~~~d~~~~~~~~~~~~~~--~~~~~~~~s~d~~~l~~~~~------d~~v~i~d~--~~~-------~---~~~v~~   92 (181)
                      ..+.+||..+.+....-....  ....++.. .+++.++.|+.      ...+..||+  .+.       .   ......
T Consensus       168 ~~v~~yd~~~~~W~~~~~~p~~~~~~~~~~~-~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~~~~~~~~~~  246 (357)
T 2uvk_A          168 KFLLSFDPSTQQWSYAGESPWYGTAGAAVVN-KGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPVSSPDGVAGG  246 (357)
T ss_dssp             CEEEEEETTTTEEEEEEECSSCCCBSCEEEE-ETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCSSTTTCCBSC
T ss_pred             ccEEEEeCCCCcEEECCCCCCCCcccccEEE-ECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCCCCCcccccc
Confidence            478899998877654432211  11012222 25666666653      345677776  221       0   001111


Q ss_pred             EEEcCCCCEEEEEeCC----------------------CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         93 TAFTRDGKFFISASAD----------------------HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        93 ~~~s~~~~~l~~~~~d----------------------~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                      .+...+++.++.|+.+                      ..+.+||+.+.+  .+...+.. .....++..+++.++.|+.
T Consensus       247 ~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~-r~~~~~~~~~~~i~v~GG~  325 (357)
T 2uvk_A          247 FAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELSQG-RAYGVSLPWNNSLLIIGGE  325 (357)
T ss_dssp             EEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECSSC-CBSSEEEEETTEEEEEEEE
T ss_pred             eEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCCCC-cccceeEEeCCEEEEEeee
Confidence            1223456777777632                      257788887543  22222211 1112233457788888885


Q ss_pred             CC------cEEEEeCCCCeeEEEcC
Q psy10953        149 DK------AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       149 d~------~v~i~~~~~~~~~~~~~  167 (181)
                      +.      .+.++++++++.++...
T Consensus       326 ~~~~~~~~~v~~l~~~~~~~~~~~~  350 (357)
T 2uvk_A          326 TAGGKAVTDSVLITVKDNKVTVQNL  350 (357)
T ss_dssp             CGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred             CCCCCEeeeEEEEEEcCcEeEeeec
Confidence            42      35666888777665443

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=93.97  E-value=1.5  Score=36.36  Aligned_cols=147  Identities=10%  Similarity=0.103  Sum_probs=80.4

Q ss_pred             EEEEEcCCCCEEEEEeCCC------cEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEeeCCC--cEEEEeCCCC
Q psy10953         15 WNVVFSPDDKYVLSGSQSG------KINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASGALDG--IINIFDANTG   85 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~------~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~~~d~--~v~i~d~~~~   85 (181)
                      ..+.++.+++.++.|+.++      .+.+||..+.+....-... .....+++.-.+++.++.|+.++  .+.+||+.+.
T Consensus       444 s~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~  523 (695)
T 2zwa_A          444 TFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEE  523 (695)
T ss_dssp             EEEEETTTTEEEEECCBSSTTCBCCCCEEEETTTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTT
T ss_pred             EEEEEccCCEEEEEcCCCCCCCccccEEEEeCCCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCC
Confidence            3344433777778877543      5788998887654432111 11111233334788888887654  6888988642


Q ss_pred             C-------------cccEEEEEEcCC-CCEEEEEeCC-------CcEEEEecCCCc--------eeeeeecCCcE-EEEE
Q psy10953         86 H-------------SSWVLSTAFTRD-GKFFISASAD-------HTVRVWNFARRE--------NMHTFKHADQV-WCVC  135 (181)
Q Consensus        86 ~-------------~~~v~~~~~s~~-~~~l~~~~~d-------~~i~v~d~~~~~--------~~~~~~~~~~v-~~~~  135 (181)
                      .             ...-.++.+..+ ++.++.|+.+       ..+..||+.+..        .+...+..... .+++
T Consensus       524 ~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~p~~~R~~~~~~  603 (695)
T 2zwa_A          524 IFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQHPLFQRYGSQIK  603 (695)
T ss_dssp             EEEECCCSSGGGGSCCBSCEEEEETTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEECGGGCCBSCEEE
T ss_pred             ceEEccCCCCCCCcccceeEEEEeCCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCCCCCCcccceEE
Confidence            1             001122444555 6777777652       358899987765        11111111111 1233


Q ss_pred             EccCCCEEEEEcC--------CCcEEEEeCCCCe
Q psy10953        136 VAPDGDKFVSVGE--------DKAVHMYSYKPEE  161 (181)
Q Consensus       136 ~sp~g~~l~~~~~--------d~~v~i~~~~~~~  161 (181)
                      ...+++.++.|+.        .+.+.+||..+..
T Consensus       604 ~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~t~~  637 (695)
T 2zwa_A          604 YITPRKLLIVGGTSPSGLFDRTNSIISLDPLSET  637 (695)
T ss_dssp             EEETTEEEEECCBCSSCCCCTTTSEEEEETTTTE
T ss_pred             EeCCCEEEEECCccCCCCCCCCCeEEEEECCCCe
Confidence            3334777777774        2468888887653

>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}

Probab=93.86  E-value=1.4  Score=32.30  Aligned_cols=139  Identities=9%  Similarity=0.090  Sum_probs=71.7

Q ss_pred             EcCCCCEEEEEeC-----C------CcEEEEeCCCCcEEEEEecCCce--EEEEEECCCCCEEEEeeCC--------CcE
Q psy10953         19 FSPDDKYVLSGSQ-----S------GKINLYGVETGKLEQIFDTRGKF--TLSIAYSTDGHWIASGALD--------GII   77 (181)
Q Consensus        19 ~s~~g~~l~~~~~-----d------~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~s~d~~~l~~~~~d--------~~v   77 (181)
                      ...+++.++.|+.     .      ..+..||..+++....-......  ...+.+  +++.++.|+.+        +.+
T Consensus        42 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~  119 (315)
T 4asc_A           42 VTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPLPSPRCLFGLGEA--LNSIYVVGGREIKDGERCLDSV  119 (315)
T ss_dssp             ECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCBSSCEESCEEEEE--TTEEEEECCEESSTTCCBCCCE
T ss_pred             EEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCCCcchhceeEEEE--CCEEEEEeCCcCCCCCcccceE
Confidence            3457788888873     1      12778888877654332211110  111222  56666666632        468


Q ss_pred             EEEeCCCCC--------cccEEEEEEcCCCCEEEEEeC-C-----CcEEEEecCCCc--eeeeeecCCcEEEEEEccCCC
Q psy10953         78 NIFDANTGH--------SSWVLSTAFTRDGKFFISASA-D-----HTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGD  141 (181)
Q Consensus        78 ~i~d~~~~~--------~~~v~~~~~s~~~~~l~~~~~-d-----~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~  141 (181)
                      .+||+.+..        ...-...+...+++.++.|+. +     ..+.+||+.+.+  .+...+.+-.-.+++ .-+++
T Consensus       120 ~~~d~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~  198 (315)
T 4asc_A          120 MCYDRLSFKWGESDPLPYVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAPMQTARSLFGAT-VHDGR  198 (315)
T ss_dssp             EEEETTTTEEEECCCCSSCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCCCSSCCBSCEEE-EETTE
T ss_pred             EEECCCCCcEeECCCCCCcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCCCCCchhceEEE-EECCE
Confidence            888886431        001111122246677777775 2     468889987653  221222111111122 22677


Q ss_pred             EEEEEcCCC-----cEEEEeCCCC
Q psy10953        142 KFVSVGEDK-----AVHMYSYKPE  160 (181)
Q Consensus       142 ~l~~~~~d~-----~v~i~~~~~~  160 (181)
                      .++.|+.++     .+.+||..+.
T Consensus       199 iyv~GG~~~~~~~~~~~~yd~~~~  222 (315)
T 4asc_A          199 IIVAAGVTDTGLTSSAEVYSITDN  222 (315)
T ss_dssp             EEEEEEECSSSEEEEEEEEETTTT
T ss_pred             EEEEeccCCCCccceEEEEECCCC
Confidence            777777543     4777887654

>1bpo_A Protein (clathrin); clathrin endocytosis beta-propeller coated-PITS, membrane PR; 2.60A {Rattus norvegicus} SCOP: a.118.1.4 b.69.6.1

Probab=93.60  E-value=2.2  Score=33.74  Aligned_cols=146  Identities=10%  Similarity=0.196  Sum_probs=91.0

Q ss_pred             eeeEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-----CEEEEeeCC---C
Q psy10953         11 PVDMWNVVFSPDDKYVLSGS-------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-----HWIASGALD---G   75 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-----~~l~~~~~d---~   75 (181)
                      ..++.+-..++++++++..+       -.|.+.+|..+.+ ..+.+..|....  ..+-.+|     +.++.+...   +
T Consensus       150 ~~QIInY~~d~~~kW~~l~GI~~~~~~v~G~mQLYS~er~-~sQ~ieGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~g~  226 (494)
T 1bpo_A          150 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK-VSQPIEGHAASF--AQFKMEGNAEESTLFCFAVRGQAGG  226 (494)
T ss_dssp             TCEEEEEEECTTSSEEEEEEEEEETTEEEEEEEEEESTTC-CEEEECCSEEEE--EEEECTTCSSEEEEEEEEECSTTCC
T ss_pred             cceEEEEEECCCCCeEEEEeecccCCcccceEEEeecccc-ccchheeeeeee--EEEecCCCCCCceEEEEEEecCCCc
Confidence            35566777789999987432       2367889987644 345555443322  2232233     234444432   6


Q ss_pred             cEEEEeCCCC--------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEE
Q psy10953         76 IINIFDANTG--------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCV  134 (181)
Q Consensus        76 ~v~i~d~~~~--------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~  134 (181)
                      ++++.++...                    ......++..++....+...+.-|.+++||+.++.++..-+ ..+.|-..
T Consensus       227 kLhi~Ei~~~~~~~~~f~kk~vdv~fppe~~~DFPvamqvs~kygviyviTK~G~i~lyDleTgt~i~~nrIs~~~iF~t  306 (494)
T 1bpo_A          227 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  306 (494)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTSTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEEcCCCccCCCCccceeeeeeCCcccccCceeEEEecccCCEEEEEecCceEEEEecccceeeeeecccCCceEEe
Confidence            8888887432                    12345677888888888888999999999999998776655 34445444


Q ss_pred             EEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      +-+....-+++....|.|.-..++.
T Consensus       307 ~~~~~~~Gi~~Vnr~GqVl~v~v~e  331 (494)
T 1bpo_A          307 APHEATAGIIGVNRKGQVLSVCVEE  331 (494)
T ss_dssp             EEETTTTEEEEEETTCEEEEEEECT
T ss_pred             cccCCCCcEEEEccCceEEEEEEcc
Confidence            5455545555566677666555543

>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}

Probab=93.29  E-value=1.6  Score=32.03  Aligned_cols=138  Identities=9%  Similarity=0.140  Sum_probs=69.5

Q ss_pred             EcCCCCEEEEEeC----CC-------cEEEEeCCCCcEEEEEecCC-c-eEEEEEECCCCCEEEEeeCC-------CcEE
Q psy10953         19 FSPDDKYVLSGSQ----SG-------KINLYGVETGKLEQIFDTRG-K-FTLSIAYSTDGHWIASGALD-------GIIN   78 (181)
Q Consensus        19 ~s~~g~~l~~~~~----d~-------~i~~~d~~~~~~~~~~~~~~-~-~~~~~~~s~d~~~l~~~~~d-------~~v~   78 (181)
                      ...++..++.|+.    ++       .+..||..+++....-.... . ......+  +++.++.|+.+       ..+.
T Consensus        53 ~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~p~~r~~~~~~~~--~~~iyv~GG~~~~~~~~~~~~~  130 (318)
T 2woz_A           53 VTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPLPSARCLFGLGEV--DDKIYVVAGKDLQTEASLDSVL  130 (318)
T ss_dssp             ECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCBSSCBCSCEEEEE--TTEEEEEEEEBTTTCCEEEEEE
T ss_pred             EEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCCCccccccceEEE--CCEEEEEcCccCCCCcccceEE
Confidence            3457788888873    11       17778888776544321111 1 1112222  56667777654       3577


Q ss_pred             EEeCCCCC-------c-ccEEEEEEcCCCCEEEEEeC------CCcEEEEecCCCc--eeeeeecCCcEEEEEEccCCCE
Q psy10953         79 IFDANTGH-------S-SWVLSTAFTRDGKFFISASA------DHTVRVWNFARRE--NMHTFKHADQVWCVCVAPDGDK  142 (181)
Q Consensus        79 i~d~~~~~-------~-~~v~~~~~s~~~~~l~~~~~------d~~i~v~d~~~~~--~~~~~~~~~~v~~~~~sp~g~~  142 (181)
                      +||+.+..       . ......+...+++.++.|+.      -..+.+||+.+.+  .+...+..-.-.+++ .-+++.
T Consensus       131 ~yd~~~~~W~~~~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~~p~~r~~~~~~-~~~~~i  209 (318)
T 2woz_A          131 CYDPVAAKWSEVKNLPIKVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAPMKTPRSMFGVA-IHKGKI  209 (318)
T ss_dssp             EEETTTTEEEEECCCSSCEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECCCSSCCBSCEEE-EETTEE
T ss_pred             EEeCCCCCEeECCCCCCcccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCCCCCCcccceEE-EECCEE
Confidence            78876421       0 00011112246777777764      2358899987653  221122111111222 236677


Q ss_pred             EEEEcCC-----CcEEEEeCCC
Q psy10953        143 FVSVGED-----KAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d-----~~v~i~~~~~  159 (181)
                      ++.|+.+     +.+.+||..+
T Consensus       210 yv~GG~~~~~~~~~~~~yd~~~  231 (318)
T 2woz_A          210 VIAGGVTEDGLSASVEAFDLKT  231 (318)
T ss_dssp             EEEEEEETTEEEEEEEEEETTT
T ss_pred             EEEcCcCCCCccceEEEEECCC
Confidence            7777643     3466777654

>2be1_A Serine/threonine-protein kinase/endoribonuclease; transcription; 2.98A {Saccharomyces cerevisiae}

Probab=92.12  E-value=3  Score=31.50  Aligned_cols=99  Identities=17%  Similarity=0.190  Sum_probs=59.1

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCce-------EEEEEEC-----CCCCEEEEeeCCCcEEEEeCCCCCccc
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKF-------TLSIAYS-----TDGHWIASGALDGIINIFDANTGHSSW   89 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~-------~~~~~~s-----~d~~~l~~~~~d~~v~i~d~~~~~~~~   89 (181)
                      .+..+++|+.++++...|.++|+.+..+......       -.|....     ..+..++.+..+..+.+.+ +++. .+
T Consensus       110 ~~g~Vy~Gs~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~e~~~~~~d~~~d~~~~~v~ig~~~y~v~~~~-~sG~-~W  187 (339)
T 2be1_A          110 EDEKVYTGSMRTIMYTINMLNGEIISAFGPGSKNGYFGSQSVDCSPEEKIKLQECENMIVIGKTIFELGIHS-YDGA-SY  187 (339)
T ss_dssp             CCEEEEECEEEEEEEEEETTTCCEEEEESTTCBCC--------------------CCEEEEEEEEEECEECC-TTSC-CC
T ss_pred             cCCEEEEEecCCEEEEEECCCCcEEEEEecCCCcccccccccccccccccccccCCCeEEEecceEEEEEEC-CCCC-eE
Confidence            5567889999999999999999998877643211       0011111     1235566666666666655 3333 22


Q ss_pred             EEE-EEE---------------cCCCCEEEEEeCCCcEEEEecCCCceee
Q psy10953         90 VLS-TAF---------------TRDGKFFISASADHTVRVWNFARRENMH  123 (181)
Q Consensus        90 v~~-~~~---------------s~~~~~l~~~~~d~~i~v~d~~~~~~~~  123 (181)
                      ... -.+               +.++.+ +.++.|+.|+-+|..++..+.
T Consensus       188 ~~~~s~~~~~~~~~~~~~~~~~s~Dg~~-~~~~~dg~v~A~d~~~G~~~W  236 (339)
T 2be1_A          188 NVTYSTWQQNVLDVPLALQNTFSKDGMC-IAPFRDKSLLASDLDFRIARW  236 (339)
T ss_dssp             CCEEEEEECCTTTHHHHTTCSSCSSSCC-EEEETTTEEEEECSTTCCEEE
T ss_pred             EEecccccccccccccccccccccCCcE-EEECCCCEEEEEECCCCcEEE
Confidence            211 112               123555 446788899988888777665

>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A

Probab=92.03  E-value=0.62  Score=37.87  Aligned_cols=69  Identities=14%  Similarity=0.172  Sum_probs=50.8

Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEecCCC------ce-------eeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         91 LSTAFTRDGKFFISASA-DHTVRVWNFARR------EN-------MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~------~~-------~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      ..+..+|||++++.++. +.++.++|++..      +.       ..+....-.....+|.++|..+.+.-.|..|..|+
T Consensus       326 HGv~vsPDGkyi~v~GKLsptvtV~d~~k~~~~~~~k~~~~~~~~~ae~e~GlGPlHt~Fd~~G~aYTtlfidSqvvkWn  405 (638)
T 3sbq_A          326 HGCNTSSDGKYFIAAGKLSPTCSMIAIDKLPDLFAGKLADPRDVIVGEPELGLGPLHTTFDGRGNAYTTLFIDSQVVKWN  405 (638)
T ss_dssp             CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHHTTCCSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEEEEE
T ss_pred             cceeeCCCCCEEEEcCCCCCeEEEEEeehhhhhhhccccCcccceEeeccCCCcccEEEECCCCceEeeeeecceEEEEe
Confidence            34688999998887775 778999998631      11       22223444678899999996666667899999999


Q ss_pred             CCC
Q psy10953        157 YKP  159 (181)
Q Consensus       157 ~~~  159 (181)
                      +..
T Consensus       406 i~~  408 (638)
T 3sbq_A          406 MEE  408 (638)
T ss_dssp             HHH
T ss_pred             ccH
Confidence            853

>3a9g_A Putative uncharacterized protein; PQQ dependent dehydrogenase, aldose sugar dehydrogenase, BET propeller fold, oxidoreductase; HET: TRE; 2.39A {Pyrobaculum aerophilum} PDB: 3a9h_A*

Probab=90.88  E-value=4.1  Score=30.69  Aligned_cols=59  Identities=20%  Similarity=0.233  Sum_probs=40.2

Q ss_pred             cEEEEEEc-------CCCCEEEEEeCCCcEEEEecCCC-cee--eeee--cCCcEEEEEEccCCCEEEEEc
Q psy10953         89 WVLSTAFT-------RDGKFFISASADHTVRVWNFARR-ENM--HTFK--HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        89 ~v~~~~~s-------~~~~~l~~~~~d~~i~v~d~~~~-~~~--~~~~--~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      .+..++|.       .+|+++++....+.|..+++... ...  ..+.  ....+..+++.|||..+++..
T Consensus       260 ap~G~~~y~g~~fp~~~G~l~v~~~~~~~v~~~~~~~~g~~~~~~~~~~~~~~rp~~v~~~pDG~lyv~~~  330 (354)
T 3a9g_A          260 APSGASFVHGDMFPGLRGWLLIACLRGSMLAAVNFGDNMEVRKISTFFKNVFGRLRDVVIDDDGGILISTS  330 (354)
T ss_dssp             CEEEEEECCSSSCGGGTTEEEEEETTTTEEEEEEECGGGCEEEEEEECTTTSCCEEEEEECTTSCEEEEEC
T ss_pred             CCcceEEECCCCCcccCCcEEEEEcCCCEEEEEEECCCCcccceeeeccCCCCCeeEEEECCCCcEEEEEe
Confidence            35677773       56777777777788998888753 221  1222  135789999999998777664

>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*

Probab=90.79  E-value=6.3  Score=32.67  Aligned_cols=141  Identities=14%  Similarity=0.199  Sum_probs=77.8

Q ss_pred             CCCCEEEEEeCC----CcEEEEeCCCCcEEEEE-e------cCCc-eEEEEEECCCCCEEEEeeCC------CcEEEEeC
Q psy10953         21 PDDKYVLSGSQS----GKINLYGVETGKLEQIF-D------TRGK-FTLSIAYSTDGHWIASGALD------GIINIFDA   82 (181)
Q Consensus        21 ~~g~~l~~~~~d----~~i~~~d~~~~~~~~~~-~------~~~~-~~~~~~~s~d~~~l~~~~~d------~~v~i~d~   82 (181)
                      .++..++.|+.+    ..+.+||..+++....- .      .... ....+.+..+++.++.|+.+      +.+.+||.
T Consensus       396 ~~~~iyv~GG~~~~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~~~~~~dv~~yd~  475 (695)
T 2zwa_A          396 AGNDVFYMGGSNPYRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDM  475 (695)
T ss_dssp             CSSCEEEECCBSSSBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSSTTCBCCCCEEEET
T ss_pred             ECCEEEEECCCCCCCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCCCCccccEEEEeC
Confidence            567777777753    46888998888765543 2      1111 11123333267777777653      35778887


Q ss_pred             CCCC---------cccEEEEEEcCCCCEEEEEeCCC--cEEEEecCCCc--eeee---eec-CCcEEEEEEccC-CCEEE
Q psy10953         83 NTGH---------SSWVLSTAFTRDGKFFISASADH--TVRVWNFARRE--NMHT---FKH-ADQVWCVCVAPD-GDKFV  144 (181)
Q Consensus        83 ~~~~---------~~~v~~~~~s~~~~~l~~~~~d~--~i~v~d~~~~~--~~~~---~~~-~~~v~~~~~sp~-g~~l~  144 (181)
                      .+..         ...-.+++.-.+++.++.|+.++  .+.+||+.+..  .+..   .+. ......+++..+ ++.++
T Consensus       476 ~t~~W~~~~~~p~~R~~h~~~~~~~~~iyv~GG~~~~~~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv  555 (695)
T 2zwa_A          476 KTREWSMIKSLSHTRFRHSACSLPDGNVLILGGVTEGPAMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGII  555 (695)
T ss_dssp             TTTEEEECCCCSBCCBSCEEEECTTSCEEEECCBCSSCSEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEE
T ss_pred             CCCcEEECCCCCCCcccceEEEEcCCEEEEECCCCCCCCEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEE
Confidence            6421         00111222324788888887654  68999987653  1111   111 111223444555 66667


Q ss_pred             EEcC--C-----CcEEEEeCCCCe
Q psy10953        145 SVGE--D-----KAVHMYSYKPEE  161 (181)
Q Consensus       145 ~~~~--d-----~~v~i~~~~~~~  161 (181)
                      .|+.  +     +.+.+|++.+..
T Consensus       556 ~GG~~~~~~~~~~~v~~yd~~~~~  579 (695)
T 2zwa_A          556 LGGGFMDQTTVSDKAIIFKYDAEN  579 (695)
T ss_dssp             ECCBCTTSSCBCCEEEEEEECTTC
T ss_pred             ECCcCCCCCeeeCcEEEEEccCCc
Confidence            7764  2     357888876654

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=89.27  E-value=3.1  Score=33.98  Aligned_cols=57  Identities=16%  Similarity=0.197  Sum_probs=37.0

Q ss_pred             EEEEEcCCCCEEEEEeCC----------C--cEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEe
Q psy10953         15 WNVVFSPDDKYVLSGSQS----------G--KINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d----------~--~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~   71 (181)
                      =+|+|+|.|++++.-..+          +  .+.+.+..++++.+.+... +..+..++|+||++.|+..
T Consensus       479 DNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvn  548 (592)
T 3zwu_A          479 DGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             cceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEE
Confidence            478999999966554322          1  2445556677776665543 4456788888888877644

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=88.96  E-value=3.6  Score=33.46  Aligned_cols=60  Identities=15%  Similarity=0.125  Sum_probs=41.7

Q ss_pred             ccEEEEEEcCCCCEEEEEeCC------------CcEEEEecCCCceeeeee--cCCcEEEEEEccCCCEEEEEc
Q psy10953         88 SWVLSTAFTRDGKFFISASAD------------HTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~~d------------~~i~v~d~~~~~~~~~~~--~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      .....+.|+++|.+.++-...            ..++.++..+++......  ...+++.++||||++.|++.-
T Consensus       476 nsPDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~v  549 (592)
T 4a9v_A          476 NSPDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             CCEEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CCCCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEEE
Confidence            346789999999987743321            256666766665444333  335799999999999987765

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.78  E-value=3.1  Score=36.59  Aligned_cols=36  Identities=17%  Similarity=0.309  Sum_probs=26.3

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee
Q psy10953         90 VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF  125 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  125 (181)
                      +.+++..++..++++-+.|+++|+||+.+++++.+.
T Consensus       240 ~vs~~~~~~~~~lftL~~D~~LRiWsl~t~~~v~t~  275 (1139)
T 4fhn_B          240 IISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  275 (1139)
T ss_dssp             BSCCEEETTTTEEEEEBTTCEEEEEETTTTEEEEEE
T ss_pred             eEEeeccCCccEEEEEeCCCEEEEEECCCCCeEEee
Confidence            344455677788888889999999988877655543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=88.59  E-value=6  Score=34.20  Aligned_cols=37  Identities=16%  Similarity=0.269  Sum_probs=29.5

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF  125 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~  125 (181)
                      .+.+++..++..++++.+.|+++|+|++.+++++.+.
T Consensus       237 ~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~  273 (950)
T 4gq2_M          237 TIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETI  273 (950)
T ss_dssp             CEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEE
T ss_pred             eEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeee
Confidence            4666777778888999999999999998887766554

>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane, secreted, protease, PALM hydrolase, developmental protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A

Probab=88.04  E-value=8.4  Score=30.33  Aligned_cols=94  Identities=19%  Similarity=0.275  Sum_probs=56.0

Q ss_pred             EEEEECCCCC-EEEEeeCCCcEEEEeCCCCC--------------------cccEEEEEEcCC----CCEEEEEeCC---
Q psy10953         57 LSIAYSTDGH-WIASGALDGIINIFDANTGH--------------------SSWVLSTAFTRD----GKFFISASAD---  108 (181)
Q Consensus        57 ~~~~~s~d~~-~l~~~~~d~~v~i~d~~~~~--------------------~~~v~~~~~s~~----~~~l~~~~~d---  108 (181)
                      ..++|.|||. .++.+...|.|++++.....                    ......++|+|+    +.++++-+..   
T Consensus        17 ~~~a~~pdG~~rl~V~er~G~i~~~~~~g~~~~~~~~~~~~~~~~g~~~~~e~Gllgia~~P~f~~n~~lYv~yt~~~~~   96 (463)
T 2wg3_C           17 VGALHSGDGSQRLFILEKEGYVKILTPEGEIFKEPYLDIHKLVQSGIKGGDERGLLSLAFHPNYKKNGKLYVSYTTNQER   96 (463)
T ss_dssp             EEEECCSSSSCCEEEEETTTEEEEECTTSCBCSSCSEECTTTBCCCCSSSCCCSEEEEEECTTHHHHCEEEEEEEECCCS
T ss_pred             eEEEECCCCCeEEEEEeCCceEEEEeCCCCeeeeeecCCcceeccCccccCCCcceeeEeCCCCcCCCEEEEEEeCCCCC
Confidence            5799999985 45556678899998743210                    123567899996    5655554321   


Q ss_pred             ---------CcEEEEecCC----------Cceeeeeec---CCcEEEEEEccCCCEEEEEcCCC
Q psy10953        109 ---------HTVRVWNFAR----------RENMHTFKH---ADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus       109 ---------~~i~v~d~~~----------~~~~~~~~~---~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                               ..|.-|.+..          .+.+..+..   ...-..++|.|||.++++.+..+
T Consensus        97 ~~~~~~~~~~~v~r~~~~~~~~~~~d~~~~~~i~~~~~~~~~H~g~~l~fgpDG~LYv~~Gd~~  160 (463)
T 2wg3_C           97 WAIGPHDHILRVVEYTVSRKNPHQVDLRTARVFLEVAELHRKHLGGQLLFGPDGFLYIILGDGM  160 (463)
T ss_dssp             SCSSSSCEEEEEEEEEBCTTCTTSBCGGGCEEEEEEEESSSSSCEEEEEECTTSCEEEEECCTT
T ss_pred             cccCCcccceEEEEEEEcCCCCCccCCCCceEEEEcCCCCCcccCCcEeECCCCcEEEEeCCCC
Confidence                     1344454432          122222221   12356799999999888877643

>3zwu_A Alkaline phosphatase PHOX; hydrolase, beta-propeller, iron; 1.39A {Pseudomonas fluorescens}

Probab=86.94  E-value=3.9  Score=33.38  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=39.3

Q ss_pred             EEEEEEcCCCCEEEEEeCC------------CcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEc
Q psy10953         90 VLSTAFTRDGKFFISASAD------------HTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        90 v~~~~~s~~~~~l~~~~~d------------~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      .-.++|+|.|+++++-..+            ..+.+.+..+++.....  +...++..++|+||++.|++.-
T Consensus       478 PDNL~fd~~G~LwI~eDg~~~~~~~~~~~gnn~~~~~~~~~g~~~rf~~~P~gaE~TG~~fspDg~tlfvni  549 (592)
T 3zwu_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVGI  549 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTTCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEEE
T ss_pred             CcceEECCCCCEEEEecCCCcccccccccccceEEEEeCCCCeEEEEEeCCCCccCcCeeECCCCCEEEEEE
Confidence            4568999999977765432            12445555555543322  3556899999999999988764

>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}

Probab=86.10  E-value=8.5  Score=28.43  Aligned_cols=85  Identities=12%  Similarity=0.191  Sum_probs=44.4

Q ss_pred             CCCEEEEEeCC-CcEEEEeCCC--CcEEEEEecC--Cc-eEEEEEECCCCCEEEEeeC-C---------CcEEEEeCCCC
Q psy10953         22 DDKYVLSGSQS-GKINLYGVET--GKLEQIFDTR--GK-FTLSIAYSTDGHWIASGAL-D---------GIINIFDANTG   85 (181)
Q Consensus        22 ~g~~l~~~~~d-~~i~~~d~~~--~~~~~~~~~~--~~-~~~~~~~s~d~~~l~~~~~-d---------~~v~i~d~~~~   85 (181)
                      ++++++.|+.+ ..+..||..+  .+....-...  .. ....+.+  +++.++.|+. +         +.+.+||+.+.
T Consensus        19 ~~~iyv~GG~~~~~~~~~d~~~~~~~W~~~~~~p~~~R~~~~~~~~--~~~lyv~GG~~~~~~~~~~~~~~v~~yd~~~~   96 (357)
T 2uvk_A           19 NDTVYIGLGSAGTAWYKLDTQAKDKKWTALAAFPGGPRDQATSAFI--DGNLYVFGGIGKNSEGLTQVFNDVHKYNPKTN   96 (357)
T ss_dssp             TTEEEEECGGGTTCEEEEETTSSSCCEEECCCCTTCCCBSCEEEEE--TTEEEEECCEEECTTSCEEECCCEEEEETTTT
T ss_pred             CCEEEEEeCcCCCeEEEEccccCCCCeeECCCCCCCcCccceEEEE--CCEEEEEcCCCCCCCccceeeccEEEEeCCCC
Confidence            77777777654 4688888864  4433322111  11 1112222  5677777765 2         46888888642


Q ss_pred             C---------cccEEEEEEcCCCCEEEEEeCC
Q psy10953         86 H---------SSWVLSTAFTRDGKFFISASAD  108 (181)
Q Consensus        86 ~---------~~~v~~~~~s~~~~~l~~~~~d  108 (181)
                      .         .......+...+++.++.|+.+
T Consensus        97 ~W~~~~~~~p~~r~~~~~~~~~~~iyv~GG~~  128 (357)
T 2uvk_A           97 SWVKLMSHAPMGMAGHVTFVHNGKAYVTGGVN  128 (357)
T ss_dssp             EEEECSCCCSSCCSSEEEEEETTEEEEEECCC
T ss_pred             cEEECCCCCCcccccceEEEECCEEEEEeCcC
Confidence            1         1111111222567777888754

>4a9v_A PHOX; hydrolase, beta-propeller; 1.10A {Pseudomonas fluorescens} PDB: 3zwu_A 4a9x_A*

Probab=84.85  E-value=8.2  Score=31.44  Aligned_cols=58  Identities=16%  Similarity=0.180  Sum_probs=32.3

Q ss_pred             EEEEEEcCCCCEEEEEeCC----------C--cEEEEeCCCCcEEEEEecC-CceEEEEEECCCCCEEEEe
Q psy10953         14 MWNVVFSPDDKYVLSGSQS----------G--KINLYGVETGKLEQIFDTR-GKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d----------~--~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d~~~l~~~   71 (181)
                      .-+|.|+++|.+.+.....          +  .+..++..++++...+... ......++|+||++.|+..
T Consensus       478 PDnL~fd~~G~LWf~TD~~~~~~g~~~~~gnn~v~~~dp~tGel~~fl~~P~~aEpnGiafSPD~ktLfV~  548 (592)
T 4a9v_A          478 PDGLGFDKAGRLWILTDGDSSNAGDFAGMGNNQMLCADPATGEIRRFMVGPIGCEVTGISFSPDQKTLFVG  548 (592)
T ss_dssp             EEEEEECTTCCEEEEECCCCCCSGGGTTCCSCEEEEECTTTCCEEEEEECCTTCEEEEEEECTTSSEEEEE
T ss_pred             CCceEECCCCCEEEEeCCCcCccccccccCCceEEEEeCCCCeEEEEEeCCCCccccCCEECCCCCEEEEE
Confidence            3578888888866633221          1  3444455556655544322 2334567777777666543

>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B

Probab=84.82  E-value=1.9  Score=37.17  Aligned_cols=40  Identities=13%  Similarity=0.213  Sum_probs=33.6

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD   50 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~   50 (181)
                      +..+.+++..++..++++-+.|+++|+|++.+++++....
T Consensus       235 ~~~~~~~~~~~~~~~lftl~~D~~LRiWsl~t~~~v~t~d  274 (950)
T 4gq2_M          235 PNTIISMIFLSTYNVLVMLSLDYKLKVLDLSTNQCVETIE  274 (950)
T ss_dssp             TTCEEEEEEETTTTEEEEEETTCEEEEEETTTTEEEEEEE
T ss_pred             cceEEEEeecCCCcEEEEEECCCEEEEEECCCCCeEeeec
Confidence            3445677888899999999999999999999999876554

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=83.30  E-value=28  Score=31.99  Aligned_cols=145  Identities=9%  Similarity=0.170  Sum_probs=76.8

Q ss_pred             eeEEEEEEcCCCCEEEEEe-------CCCcEEEEeCCCCcEEEEEecCCceEEEEEEC--C-CCCEEEEeeC---CCcEE
Q psy10953         12 VDMWNVVFSPDDKYVLSGS-------QSGKINLYGVETGKLEQIFDTRGKFTLSIAYS--T-DGHWIASGAL---DGIIN   78 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~-------~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s--~-d~~~l~~~~~---d~~v~   78 (181)
                      .++.+-..+++.+|++..|       -.|.+.+|.++.+. .+.+.+|......+...  + ....++.+..   .+.++
T Consensus       151 ~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~~-sQ~iegha~~F~~~~~~~~~~~~~l~~f~~~~~~g~kLh  229 (1630)
T 1xi4_A          151 CQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRKV-SQPIEGHAASFAQFKMEGNAEESTLFCFAVRGQAGGKLH  229 (1630)
T ss_pred             CeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeeccccc-chhhhHhHhhhheeccCCCCCCceEEEEEEecCCCceEE
Confidence            4455666788888876332       24778888776433 23333332211112111  1 1233333322   26788


Q ss_pred             EEeCCCC--------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEc
Q psy10953         79 IFDANTG--------------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVA  137 (181)
Q Consensus        79 i~d~~~~--------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~s  137 (181)
                      +.++...                    ......++..++....+...+.-|.+++||+.++..+..-+ ....|-..+-+
T Consensus       230 i~Ei~~~~~~~~~f~kk~~~~~~~~~~~~Dfpv~~~vs~k~g~iy~itk~G~~~~~d~~t~~~i~~~ris~~~iF~~~~~  309 (1630)
T 1xi4_A          230 IIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVTAPH  309 (1630)
T ss_pred             EEecCCCccCCCCCccccccccCCcccccCcceEEEeccccCEEEEEecCceEEEEecccchhhhhccccCCceEEeccC
Confidence            8877432                    01234566777777777788889999999999987664433 22333333333


Q ss_pred             cCCCEEEEEcCCCcEEEEeC
Q psy10953        138 PDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus       138 p~g~~l~~~~~d~~v~i~~~  157 (181)
                      +...-+++....|.|.-..+
T Consensus       310 ~~~~g~~~vnr~G~vl~v~v  329 (1630)
T 1xi4_A          310 EATAGIIGVNRKGQVLSVCV  329 (1630)
T ss_pred             CCCCceEEEcCCceEEEEEE
Confidence            33223343445555544443

>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A

Probab=81.72  E-value=21  Score=29.54  Aligned_cols=139  Identities=13%  Similarity=0.111  Sum_probs=80.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH------   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~------   86 (181)
                      .+.++....+| .|..|+.+| +..||..+.++..........+.++.. .+|. |-.+..+ -+..||..++.      
T Consensus        64 ~i~~i~~d~~g-~lWigT~~G-l~~yd~~~~~f~~~~~~~~~~i~~i~~-~~g~-lWigt~~-Gl~~~~~~~~~~~~~~~  138 (758)
T 3ott_A           64 RIYCGVIIDNT-YLYMGTDNG-ILVYNYRADRYEQPETDFPTDVRTMAL-QGDT-LWLGALN-GLYTYQLQSRKLTSFDT  138 (758)
T ss_dssp             CEEEEEEETTT-EEEEEETTE-EEEEETTTTEECCCSCCCCSCEEEEEE-ETTE-EEEEETT-EEEEEETTTCCEEEECH
T ss_pred             eEEEEEEcCCC-cEEEEeCCC-eEEEeCCCCEEECcccCCCceEEEEEe-cCCc-EEEEcCC-cceeEeCCCCeEEEecc
Confidence            46677666665 466666554 778998877654311111122444443 3454 4445544 57778865432      


Q ss_pred             ------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-------CCcEEEEEEccCCCEEEEEcCCCcEE
Q psy10953         87 ------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-------ADQVWCVCVAPDGDKFVSVGEDKAVH  153 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-------~~~v~~~~~sp~g~~l~~~~~d~~v~  153 (181)
                            ...|.++..+++|++.+. +.+ -+..||..+.... .+..       ...|.++...++++.|..+.. +.+.
T Consensus       139 ~~~~l~~~~i~~i~~d~~g~lWig-t~~-Gl~~~~~~~~~~~-~~~~~~~~~~~~~~i~~i~~d~~~~~lWigt~-~Gl~  214 (758)
T 3ott_A          139 RRNGLPNNTIYSIIRTKDNQIYVG-TYN-GLCRYIPSNGKFE-GIPLPVHSSQSNLFVNSLLEDTTRQCVWIGTE-GYLF  214 (758)
T ss_dssp             HHHCCSCSCEEEEEECTTCCEEEE-ETT-EEEEEETTTTEEE-EECCCCCTTCSSCCEEEEEEETTTTEEEEEEE-EEEE
T ss_pred             CCCCcCCCeEEEEEEcCCCCEEEE-eCC-CHhhCccCCCceE-EecCCCccccccceeEEEEEECCCCEEEEEEC-CCCe
Confidence                  234777777888886653 333 4778887665422 2211       124788888877776666663 4677


Q ss_pred             EEeCCCC
Q psy10953        154 MYSYKPE  160 (181)
Q Consensus       154 i~~~~~~  160 (181)
                      .++..++
T Consensus       215 ~~~~~~~  221 (758)
T 3ott_A          215 QYFPSTG  221 (758)
T ss_dssp             EEETTTT
T ss_pred             EEcCCCC
Confidence            7776654

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=80.94  E-value=22  Score=32.65  Aligned_cols=99  Identities=8%  Similarity=0.195  Sum_probs=64.1

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC---------C-
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---------H-   86 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---------~-   86 (181)
                      .-.+|..+.+|.=. ..++.+||+++.+.+..+..... +.-+.|-.+.. |+... +..|+-|++...         | 
T Consensus        71 AIMnP~~~iiALra-g~~lQiFnl~~k~klks~~~~e~-VvfWkWis~~~-l~lVT-~~aVyHW~~~~~s~P~k~fdR~~  146 (1630)
T 1xi4_A           71 AIMNPASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD-VTFWKWISLNT-VALVT-DNAVYHWSMEGESQPVKMFDRHS  146 (1630)
T ss_pred             hccCCCcceEEEec-CCeEEEeehHHhhhhcccccCCC-ceEEEecCCCe-eEEEc-CCeEEEeccCCCCccHHHHhcch
Confidence            34677777776554 57899999988877766665555 44688854433 33222 347899998531         1 


Q ss_pred             ---cccEEEEEEcCCCCEEEEEe-------CCCcEEEEecCCC
Q psy10953         87 ---SSWVLSTAFTRDGKFFISAS-------ADHTVRVWNFARR  119 (181)
Q Consensus        87 ---~~~v~~~~~s~~~~~l~~~~-------~d~~i~v~d~~~~  119 (181)
                         ...|..-..+++.++++-.+       ..|.+.+|....+
T Consensus       147 ~L~~~QIinY~~d~~~kW~~l~gi~~~~~~v~G~mQLyS~er~  189 (1630)
T 1xi4_A          147 SLAGCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDRK  189 (1630)
T ss_pred             hcccCeeEEeeeCCCCCeEEEEeeccCCCcccceeeeeecccc
Confidence               23466667788888776433       3478888887654

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	181
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	3e-22
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-12
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	4e-08
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	8e-07
d1tbga_	340	b.69.4.1 (A:) beta1-subunit of the signal-transduc	1e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-21
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-16
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-13
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	2e-09
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	3e-07
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	4e-05
d1erja_	388	b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea	0.001
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-21
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	4e-12
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	2e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	3e-10
d1vyhc1	317	b.69.4.1 (C:92-408) Platelet-activating factor ace	0.002
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-14
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	4e-13
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	5e-09
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	2e-06
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	1e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	3e-04
d1gxra_	337	b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum	8e-04
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-12
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-09
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-08
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	2e-07
d2ovrb2	342	b.69.4.1 (B:2365-2706) F-box/WD repeat-containing	1e-06
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	4e-12
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	3e-11
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	5e-10
d1k8kc_	371	b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1	9e-08
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	7e-12
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	1e-10
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	3e-06
d1yfqa_	342	b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake	2e-04
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	2e-10
d1qksa2	432	b.70.2.1 (A:136-567) C-terminal (heme d1) domain o	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-10
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-07
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	3e-05
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	2e-04
d1k32a3	360	b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar	0.002
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	5e-10
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	2e-08
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	3e-06
d1nexb2	355	b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker'	1e-04
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	5e-10
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	1e-09
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	6e-07
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1p22a2	293	b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be	0.001
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	6e-10
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	1e-06
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	4e-05
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	3e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	7e-04
d1nr0a2	299	b.69.4.1 (A:313-611) Actin interacting protein 1 {	0.004
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-09
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	2e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-07
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.001
d1jmxb_	346	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	0.003
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-09
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	3e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	5e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	7e-07
d1nr0a1	311	b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne	2e-05
d2bbkh_	355	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	2e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	8e-08
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	7e-07
d1mdah_	368	b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {	0.001
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	2e-07
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-06
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	1e-05
d1pgua1	325	b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba	6e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	9e-07
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	1e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	2e-05
d1sq9a_	393	b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake	0.001
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-07
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	2e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	4e-06
d1pgua2	287	b.69.4.1 (A:327-613) Actin interacting protein 1 {	0.004
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	3e-07
d1hzua2	426	b.70.2.1 (A:118-543) C-terminal (heme d1) domain o	2e-06
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	9e-07
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-05
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	1e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	3e-04
d1pbyb_	337	b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase	8e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	2e-05
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	4e-04
d1l0qa2	301	b.69.2.3 (A:1-301) Surface layer protein {Archaeon	0.002
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	2e-05
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	1e-04
d1qnia2	441	b.69.3.1 (A:10-450) Nitrous oxide reductase, N-ter	0.002
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	3e-04
d1ri6a_	333	b.69.11.1 (A:) Putative isomerase YbhE {Escherichi	0.003

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 89.4 bits (220), Expect = 3e-22
 Identities = 30/155 (19%), Positives = 63/155 (40%), Gaps = 11/155 (7%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
           D+ ++  +PD +  +SG+      L+ V  G   Q F        +I +  +G+  A+G+
Sbjct: 186 DVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGS 245

Query: 73  LDGIINIFDANTGHSSW----------VLSTAFTRDGKFFISASADHTVRVWNFARRENM 122
            D    +FD                  + S +F++ G+  ++   D    VW+  + +  
Sbjct: 246 DDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305

Query: 123 HTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
                H ++V C+ V  DG    +   D  + +++
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.3 bits (147), Expect = 4e-12
 Identities = 20/115 (17%), Positives = 36/115 (31%), Gaps = 11/115 (9%)

Query: 65  GHWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRV--- 113
                SGA D    ++D           GH S + +  F  +G  F + S D T R+   
Sbjct: 196 TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDL 255

Query: 114 WNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
                            +  V  +  G   ++  +D   +++     +   V  G
Sbjct: 256 RADQELMTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAG 310

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 49.3 bits (116), Expect = 4e-08
 Identities = 16/73 (21%), Positives = 34/73 (46%), Gaps = 1/73 (1%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFV 144
           H+  V+S +   D + F+S + D + ++W+        TF  H   +  +C  P+G+ F 
Sbjct: 183 HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFA 242

Query: 145 SVGEDKAVHMYSY 157
           +  +D    ++  
Sbjct: 243 TGSDDATCRLFDL 255

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 45.5 bits (106), Expect = 8e-07
 Identities = 13/61 (21%), Positives = 24/61 (39%), Gaps = 1/61 (1%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQ-VWCVCVAPDGDK 142
            GH + + +  +  D +  +SAS D  + +W+      +H        V     AP G+ 
Sbjct: 52  RGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNY 111

Query: 143 F 143
            
Sbjct: 112 V 112

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 42.0 bits (97), Expect = 1e-05
 Identities = 34/163 (20%), Positives = 68/163 (41%), Gaps = 12/163 (7%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
           + + +  D + ++S SQ GK+ ++   T         R  + ++ AY+  G+++A G LD
Sbjct: 59  YAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLD 118

Query: 75  GIINIFDANTGHSSWVLSTAFT-----------RDGKFFISASADHTVRVWNFARRENMH 123
            I +I++  T   +  +S                D    +++S D T  +W+    +   
Sbjct: 119 NICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTT 178

Query: 124 TFKHADQ-VWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
           TF      V  + +APD   FVS   D +  ++  +     + 
Sbjct: 179 TFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 87.2 bits (214), Expect = 3e-21
 Identities = 39/179 (21%), Positives = 71/179 (39%), Gaps = 34/179 (18%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-------LSIAYSTDGH 66
               V   D KY+ +GS    + ++  ETG L +  D+  +          S+ ++ DG 
Sbjct: 208 TTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQ 267

Query: 67  WIASGALDGIINIFDANTG--------------------HSSWVLSTAFTRDGKFFISAS 106
            + SG+LD  + +++                        H  +VLS A T++ ++ +S S
Sbjct: 268 SVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGS 327

Query: 107 ADHTVRVWNFARRENMHTFK-HADQVWCVCVA------PDGDKFVSVGEDKAVHMYSYK 158
            D  V  W+      +   + H + V  V VA      P+ + F +   D    ++ YK
Sbjct: 328 KDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 73.3 bits (178), Expect = 2e-16
 Identities = 29/130 (22%), Positives = 54/130 (41%), Gaps = 26/130 (20%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT------------LSIAYS 62
           ++VVF+ D + V+SGS    + L+ ++    +    T    T            LS+A +
Sbjct: 258 YSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATT 317

Query: 63  TDGHWIASGALDGIINIFDANT--------GHSSWVLSTAFTR------DGKFFISASAD 108
            +  +I SG+ D  +  +D  +        GH + V+S A         +   F + S D
Sbjct: 318 QNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSVISVAVANGSSLGPEYNVFATGSGD 377

Query: 109 HTVRVWNFAR 118
              R+W + +
Sbjct: 378 CKARIWKYKK 387

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 64.0 bits (154), Expect = 4e-13
 Identities = 42/193 (21%), Positives = 77/193 (39%), Gaps = 28/193 (14%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
            K +  +     D++++ + P    ++SGS    + ++ + TG+           T    
Sbjct: 153 RKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAV 212

Query: 61  YSTDGHWIASGALDGIINIFDANT---------------GHSSWVLSTAFTRDGKFFISA 105
              DG +IA+G+LD  + ++D+ T               GH   V S  FTRDG+  +S 
Sbjct: 213 SPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSG 272

Query: 106 SADHTVRVWNFARREN-------------MHTFKHADQVWCVCVAPDGDKFVSVGEDKAV 152
           S D +V++WN     N             +    H D V  V    + +  +S  +D+ V
Sbjct: 273 SLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGV 332

Query: 153 HMYSYKPEEEVEV 165
             +  K    + +
Sbjct: 333 LFWDKKSGNPLLM 345

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 53.6 bits (127), Expect = 2e-09
 Identities = 40/160 (25%), Positives = 67/160 (41%), Gaps = 16/160 (10%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
            +V FSPD K++ +G++   I ++ +E  K+  I     +   S+ Y   G  + SG+ D
Sbjct: 125 RSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGD 184

Query: 75  GIINIFDANTG--------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
             + I+D  TG                    DGK+  + S D  VRVW+      +    
Sbjct: 185 RTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLD 244

Query: 127 --------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK 158
                   H D V+ V    DG   VS   D++V +++ +
Sbjct: 245 SENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQ 284

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 46.7 bits (109), Expect = 3e-07
 Identities = 15/92 (16%), Positives = 32/92 (34%), Gaps = 20/92 (21%)

Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------------------ 126
            H+S V    F+ DG++  +   + T +V+  +    +                      
Sbjct: 60  DHTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSP 118

Query: 127 -HADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
                +  VC +PDG    +  ED+ + ++  
Sbjct: 119 SSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 150

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.6 bits (93), Expect = 4e-05
 Identities = 22/121 (18%), Positives = 44/121 (36%), Gaps = 17/121 (14%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
             V FS D +Y+ +G  +    +Y V  G L                       A+   +
Sbjct: 66  CCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARL--------------SDDSAANKDPE 110

Query: 75  GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
            +     ++     ++ S  F+ DGKF  + + D  +R+W+   R+ +   +  +Q    
Sbjct: 111 NLNTS--SSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYS 168

Query: 135 C 135
            
Sbjct: 169 L 169

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 6/68 (8%)

Query: 101 FFISASADHTVRVWNFARREN-----MHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
             +    +    ++N A           +  H   V CV  + DG ++++ G +K   +Y
Sbjct: 30  DALKKQTNDYYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDG-EYLATGCNKTTQVY 88

Query: 156 SYKPEEEV 163
                  V
Sbjct: 89  RVSDGSLV 96

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 86.3 bits (212), Expect = 3e-21
 Identities = 35/184 (19%), Positives = 64/184 (34%), Gaps = 29/184 (15%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
              +         +  V  + D   + S S    + ++ V T + +            I+
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECIS 192

Query: 61  Y--------------------STDGHWIASGALDGIINIFDANTG--------HSSWVLS 92
           +                       G ++ SG+ D  I ++D +TG        H +WV  
Sbjct: 193 WAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRG 252

Query: 93  TAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA 151
             F   GKF +S + D T+RVW++  +  M T   H   V  +         V+   D+ 
Sbjct: 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 312

Query: 152 VHMY 155
           V ++
Sbjct: 313 VKVW 316

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.9 bits (146), Expect = 4e-12
 Identities = 36/158 (22%), Positives = 62/158 (39%), Gaps = 9/158 (5%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
             V+F P    ++S S+   I ++  ETG  E+           I++   G  +AS + D
Sbjct: 21  TRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSAD 80

Query: 75  GIINIFDANTGHSSWVL--------STAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
             I ++D         +        S +   +G   +SAS D T+++W       + TF 
Sbjct: 81  MTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 140

Query: 127 -HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
            H + V  V    DG    S   D+ V ++    +E  
Sbjct: 141 GHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECK 178

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 56.3 bits (134), Expect = 2e-10
 Identities = 9/80 (11%), Positives = 34/80 (42%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
             +  +      +  V+F    K++LS +    + ++  +  +  +  +    F  S+ +
Sbjct: 238 MCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDF 297

Query: 62  STDGHWIASGALDGIINIFD 81
                ++ +G++D  + +++
Sbjct: 298 HKTAPYVVTGSVDQTVKVWE 317

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 55.5 bits (132), Expect = 3e-10
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAP 138
           +GH S V    F       +SAS D T++VW++   +   T K H D V  +    
Sbjct: 14  SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDH 69

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.9 bits (81), Expect = 0.002
 Identities = 11/53 (20%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 112 RVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
           + W   R    +    H   V  V   P     VS  ED  + ++ Y+  +  
Sbjct: 1   KEWI-PRPPEKYALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE 52

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.9 bits (164), Expect = 2e-14
 Identities = 19/71 (26%), Positives = 30/71 (42%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVS 145
           H S VLS  F   GK+F+S   D+ +  W      ++   K +  V    ++ D    V+
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVT 323

Query: 146 VGEDKAVHMYS 156
              DK   +Y 
Sbjct: 324 GSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 4e-13
 Identities = 22/110 (20%), Positives = 45/110 (40%), Gaps = 8/110 (7%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
            ++++ + P  +++  G +S  + +  V      Q+         S+ ++  G W  S  
Sbjct: 226 QIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVL-SLKFAYCGKWFVSTG 284

Query: 73  LDGIINIFDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWN 115
            D ++N +    G        SS VLS   + D K+ ++ S D    V+ 
Sbjct: 285 KDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYE 334

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 5e-09
 Identities = 11/79 (13%), Positives = 25/79 (31%), Gaps = 7/79 (8%)

Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------HADQVWCVCVAP 138
            H   V +   +   +   +      V+VW+ +   N             + +    + P
Sbjct: 49  NHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLP 107

Query: 139 DGDKFVSVGEDKAVHMYSY 157
           DG   +  GE   + ++  
Sbjct: 108 DGCTLIVGGEASTLSIWDL 126

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.4 bits (103), Expect = 2e-06
 Identities = 13/131 (9%), Positives = 32/131 (24%), Gaps = 15/131 (11%)

Query: 18  VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGII 77
           V +      +       I        +     +       ++  S     + +G   G +
Sbjct: 17  VTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVC-AVTISNPTRHVYTGG-KGCV 74

Query: 78  NIFDANT-------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT 124
            ++D +                 +++ S     DG   I      T+ +W+ A       
Sbjct: 75  KVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIK 134

Query: 125 FKHADQVWCVC 135
            +         
Sbjct: 135 AELTSSAPACY 145

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.0 bits (89), Expect = 1e-04
 Identities = 14/87 (16%), Positives = 29/87 (33%)

Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV 144
             +S + S  +   G++         V V +  + +      H   V  +  A  G  FV
Sbjct: 222 DFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFV 281

Query: 145 SVGEDKAVHMYSYKPEEEVEVNGGGGE 171
           S G+D  ++ +       +  +     
Sbjct: 282 STGKDNLLNAWRTPYGASIFQSKESSS 308

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.3 bits (87), Expect = 3e-04
 Identities = 12/68 (17%), Positives = 23/68 (33%), Gaps = 2/68 (2%)

Query: 90  VLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE 148
             S   T DG+   +    D  +          ++T  H + V  V ++    + V  G 
Sbjct: 12  AYSFHVTADGQMQPVPFPPDALIGPGIPRHARQINTLNHGEVVCAVTISNPT-RHVYTGG 70

Query: 149 DKAVHMYS 156
              V ++ 
Sbjct: 71  KGCVKVWD 78

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 16/126 (12%), Positives = 36/126 (28%), Gaps = 6/126 (4%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGK-----LEQIFDTRGKFTLSIAYSTDGHWIA 69
             V  S   ++V +G + G + ++ +          +     R  +  S     DG  + 
Sbjct: 55  CAVTISNPTRHVYTGGK-GCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLI 113

Query: 70  SGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHAD 129
            G     ++I+D              +    + ++ S D  V     +         H  
Sbjct: 114 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQ 173

Query: 130 QVWCVC 135
            +    
Sbjct: 174 TLVRQF 179

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 1e-12
 Identities = 29/153 (18%), Positives = 47/153 (30%), Gaps = 17/153 (11%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
                    D  +V+SGS    I ++ VETG            T  +      + + SG 
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGN 234

Query: 73  LDGIINIFDANTGHSSWVLSTAFTRD---------GKFFISASADHTVRVWNFARRENMH 123
            D  + I+D  TG     L                  F I++S D TV++W+    E + 
Sbjct: 235 ADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFIR 294

Query: 124 TFK------HADQVWCVCVAPDGDKFVSVGEDK 150
                        VW +  +           + 
Sbjct: 295 NLVTLESGGSGGVVWRIRASNTKLVCAVGSRNG 327

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.0 bits (128), Expect = 1e-09
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 2/75 (2%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK 142
            GH   V+ T     G   +S S D+T++VW+    + + T   H   VW   +  +   
Sbjct: 13  KGHDDHVI-TCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIII 71

Query: 143 FVSVGEDKAVHMYSY 157
             S      V     
Sbjct: 72  SGSTDRTLKVWNAET 86

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 30/158 (18%), Positives = 62/158 (39%), Gaps = 10/158 (6%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
                   D + V+SG+    + ++  ET         +G      +   DG  + SG+L
Sbjct: 138 AAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTL--QGHTNRVYSLQFDGIHVVSGSL 195

Query: 74  DGIINIFDAN------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH 127
           D  I ++D        T      L++         +S +AD TV++W+    + + T + 
Sbjct: 196 DTSIRVWDVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQG 255

Query: 128 AD--QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV 163
            +  Q    C+  + +  ++  +D  V ++  K  E +
Sbjct: 256 PNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLKTGEFI 293

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 17/122 (13%), Positives = 39/122 (31%), Gaps = 18/122 (14%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASG 71
                     D  ++SG+    + ++ ++TG+  Q      K          + +++ + 
Sbjct: 217 QSLTSGMELKDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITS 276

Query: 72  ALDGIINIFDANTG-------------HSSWVLSTAFTRDGKFFISASADHT----VRVW 114
           + DG + ++D  TG                 V     +         S + T    + V 
Sbjct: 277 SDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLVL 336

Query: 115 NF 116
           +F
Sbjct: 337 DF 338

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (105), Expect = 1e-06
 Identities = 30/195 (15%), Positives = 56/195 (28%), Gaps = 45/195 (23%)

Query: 18  VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTD------------- 64
                   ++SGS    + ++   TGK  +          S     +             
Sbjct: 22  CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKV 81

Query: 65  -------------------------GHWIASGALDGIINIFDANTGHSSWVL------ST 93
                                       + SG+ D  + ++D  TG    VL        
Sbjct: 82  WNAETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVR 141

Query: 94  AFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVH 153
               DG+  +S + D  V+VW+      +HT +         +  DG   VS   D ++ 
Sbjct: 142 CVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVY-SLQFDGIHVVSGSLDTSIR 200

Query: 154 MYSYKPEEEVEVNGG 168
           ++  +    +    G
Sbjct: 201 VWDVETGNCIHTLTG 215

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 61.0 bits (146), Expect = 4e-12
 Identities = 13/88 (14%), Positives = 25/88 (28%), Gaps = 10/88 (11%)

Query: 58  SIAYSTDGHWIASGALDGIINIFDANT----------GHSSWVLSTAFTRDGKFFISASA 107
             A++ D   IA    +  ++I++ +            H+  V    +  D    ++   
Sbjct: 12  CHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGT 71

Query: 108 DHTVRVWNFARRENMHTFKHADQVWCVC 135
           D    VW    R    T           
Sbjct: 72  DRNAYVWTLKGRTWKPTLVILRINRAAR 99

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 58.7 bits (140), Expect = 3e-11
 Identities = 16/78 (20%), Positives = 35/78 (44%), Gaps = 3/78 (3%)

Query: 83  NTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA--RRENMHTFK-HADQVWCVCVAPD 139
           ++     +   A+ +D         +H V ++  +  +   +H  K H  QV  V  APD
Sbjct: 3   HSFLVEPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPD 62

Query: 140 GDKFVSVGEDKAVHMYSY 157
            ++ V+ G D+  ++++ 
Sbjct: 63  SNRIVTCGTDRNAYVWTL 80

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 55.2 bits (131), Expect = 5e-10
 Identities = 13/143 (9%), Positives = 37/143 (25%), Gaps = 2/143 (1%)

Query: 17  VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASGALD 74
             ++ D   +     + ++++Y     K  Q+ + +        + ++ D + I +   D
Sbjct: 13  HAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTD 72

Query: 75  GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCV 134
               ++          L           +  + +          R     +   +  W V
Sbjct: 73  RNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132

Query: 135 CVAPDGDKFVSVGEDKAVHMYSY 157
           C         +V           
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVL 155

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.3 bits (113), Expect = 9e-08
 Identities = 22/161 (13%), Positives = 46/161 (28%), Gaps = 13/161 (8%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD 74
             V FS +   V   S    + L   +         +     L++ + T+   +A+G  D
Sbjct: 205 HGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETLPLLAVTFITESSLVAAGH-D 263

Query: 75  GIINIFDANTGHSSWVL--------STAFTRDGKFFISASADHTVRVWNFARRENMHTFK 126
               +F  ++                ++           + D        A         
Sbjct: 264 CFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSL 323

Query: 127 HADQVWCVCVAPDGD----KFVSVGEDKAVHMYSYKPEEEV 163
           H + V  + V   G     +F + G D  + ++  +  E  
Sbjct: 324 HKNSVSQISVLSGGKAKCSQFCTTGMDGGMSIWDVRSLESA 364

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 60.6 bits (145), Expect = 7e-12
 Identities = 9/85 (10%), Positives = 26/85 (30%), Gaps = 4/85 (4%)

Query: 77  INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN----MHTFKHADQVW 132
           + I         ++            +  S D ++ V+ F  +      + + ++   + 
Sbjct: 1   MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLL 60

Query: 133 CVCVAPDGDKFVSVGEDKAVHMYSY 157
           C     + D  + VG  +   +   
Sbjct: 61  CCNFIDNTDLQIYVGTVQGEILKVD 85

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 56.8 bits (135), Expect = 1e-10
 Identities = 19/137 (13%), Positives = 40/137 (29%), Gaps = 19/137 (13%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
               +   + +     S  G++ +   +    +     R  F                  
Sbjct: 197 RDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFR----------------- 239

Query: 74  DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
                +   +T  +  V S  F+   KF  +A +D  +  WN   R+ +  F   ++   
Sbjct: 240 --CHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSV 297

Query: 134 VCVAPDGDKFVSVGEDK 150
           V +A   +       D 
Sbjct: 298 VKIACSDNILCLATSDD 314

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-06
 Identities = 6/89 (6%), Positives = 18/89 (20%), Gaps = 11/89 (12%)

Query: 58  SIAYSTDGHWIASGALDGIINIFDANT-----------GHSSWVLSTAFTRDGKFFISAS 106
            I        +   + DG + ++  +             +   +L   F  +    I   
Sbjct: 16  DIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVG 75

Query: 107 ADHTVRVWNFARRENMHTFKHADQVWCVC 135
                 +               ++     
Sbjct: 76  TVQGEILKVDLIGSPSFQALTNNEANLGI 104

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 14/137 (10%), Positives = 31/137 (22%), Gaps = 4/137 (2%)

Query: 3   QISKINVGPVD-MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT---LS 58
           QI +I   P D + ++   P    +L  S  G + +Y  +            ++    L 
Sbjct: 2   QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLC 61

Query: 59  IAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFAR 118
             +  +              +     G  S+   T    +              +     
Sbjct: 62  CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWD 121

Query: 119 RENMHTFKHADQVWCVC 135
                          + 
Sbjct: 122 GLIEVIDPRNYGDGVIA 138

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 56.3 bits (135), Expect = 2e-10
 Identities = 22/199 (11%), Positives = 56/199 (28%), Gaps = 30/199 (15%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----F 55
            +  + ++ G   +     S   +Y+    + GK+N+  +   +   + + +        
Sbjct: 52  YEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSI 110

Query: 56  TLSIAYSTDGHW-IASGALDGIINIFDA-------------------NTGHSSWVLSTAF 95
             S     +  + IA         I D                           V +   
Sbjct: 111 ETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILA 170

Query: 96  TRDGKFFI-SASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDK---FVSVGEDKA 151
           +     FI +      + + ++    N+ T + + + +      DG       +      
Sbjct: 171 SHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNK 230

Query: 152 VHMYSYKPEEEVEVNGGGG 170
           + +   K  + V +   GG
Sbjct: 231 LVVIDTKEGKLVAIEDTGG 249

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} Length = 432

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

 Score = 41.3 bits (96), Expect = 3e-05
 Identities = 11/74 (14%), Positives = 23/74 (31%), Gaps = 2/74 (2%)

Query: 94  AFTRDGK--FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA 151
               D +  F ++      + + + +  E          V    ++  G     +G D  
Sbjct: 25  MNDWDLENLFSVTLRDAGQIALIDGSTYEIKTVLDTGYAVHISRLSASGRYLFVIGRDGK 84

Query: 152 VHMYSYKPEEEVEV 165
           V+M     +E   V
Sbjct: 85  VNMIDLWMKEPTTV 98

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 56.4 bits (134), Expect = 2e-10
 Identities = 12/135 (8%), Positives = 33/135 (24%), Gaps = 11/135 (8%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGK-------INLYGVETGKLEQIFDTRG 53
           + +   I + P         P      +G                     ++    ++  
Sbjct: 217 VSKPFVIPLIPGSPNPTKLVPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSI 276

Query: 54  KFTLSIAYSTDGHWIASGALDGIINIFDANTG----HSSWVLSTAFTRDGKFFISASADH 109
                  +     +       G++  +D  T       + +     + D K  +    D 
Sbjct: 277 LIYSVPVHGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKNNLTDLRLSADRKTVMVRKDDG 336

Query: 110 TVRVWNFARRENMHT 124
            +  +   + E+  T
Sbjct: 337 KIYTFPLEKPEDERT 351

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 13/79 (16%), Positives = 23/79 (29%), Gaps = 4/79 (5%)

Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIIN 78
                 Y     + G +  Y V+T K+ ++ +        +  S D   +     DG I 
Sbjct: 284 HGEFAAYYQGAPEKGVLLKYDVKTRKVTEVKN----NLTDLRLSADRKTVMVRKDDGKIY 339

Query: 79  IFDANTGHSSWVLSTAFTR 97
            F          + T    
Sbjct: 340 TFPLEKPEDERTVETDKRP 358

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 41.0 bits (94), Expect = 3e-05
 Identities = 11/85 (12%), Positives = 25/85 (29%), Gaps = 9/85 (10%)

Query: 63  TDGHWIASGALDGIINIFDANTG------HSSWVLSTAFTRDGKFFISASADH--TVRVW 114
            DG  IA  +  G   I D +            +       D K            + ++
Sbjct: 13  LDGDLIAFVS-RGQAFIQDVSGTYVLKVPEPLRIRYVRRGGDTKVAFIHGTREGDFLGIY 71

Query: 115 NFARRENMHTFKHADQVWCVCVAPD 139
           ++   +     ++   V+ + V  +
Sbjct: 72  DYRTGKAEKFEENLGNVFAMGVDRN 96

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 38.7 bits (88), Expect = 2e-04
 Identities = 16/149 (10%), Positives = 39/149 (26%), Gaps = 12/149 (8%)

Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG--I 76
           FSP D  +++    G+  +  V    + ++          +    D              
Sbjct: 10  FSPLDGDLIAFVSRGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDF 67

Query: 77  INIFDANTG-------HSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFKHA 128
           + I+D  TG       +   V +    R+     ++      + V     +  +      
Sbjct: 68  LGIYDYRTGKAEKFEENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSRE 127

Query: 129 DQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
             +    ++ +          K      Y
Sbjct: 128 AMITDFTISDNSRFIAYGFPLKHGETDGY 156

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 10/39 (25%), Positives = 20/39 (51%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT 51
           ++ ++  S D K V+     GKI  + +E  + E+  +T
Sbjct: 316 NLTDLRLSADRKTVMVRKDDGKIYTFPLEKPEDERTVET 354

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 55.3 bits (131), Expect = 5e-10
 Identities = 17/75 (22%), Positives = 33/75 (44%), Gaps = 3/75 (4%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDK 142
            GH + V+ T    +  + I+ + D  +RV++   ++ +     H   VW +  A  G  
Sbjct: 9   RGHMTSVI-TCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGG-I 66

Query: 143 FVSVGEDKAVHMYSY 157
            VS   D+ V ++  
Sbjct: 67  LVSGSTDRTVRVWDI 81

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 50.7 bits (119), Expect = 2e-08
 Identities = 19/130 (14%), Positives = 40/130 (30%), Gaps = 9/130 (6%)

Query: 18  VFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----- 72
               +D YV++G+    I +Y     K             ++ Y+  G  ++        
Sbjct: 18  CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHGGILVSGSTDRTVR 77

Query: 73  ----LDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA 128
                 G           +   L     ++ K+ ++ S D+T+ VW   +  ++      
Sbjct: 78  VWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEE 137

Query: 129 DQVWCVCVAP 138
                V   P
Sbjct: 138 HDYPLVFHTP 147

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.1 bits (102), Expect = 3e-06
 Identities = 11/74 (14%), Positives = 27/74 (36%), Gaps = 3/74 (4%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKF 143
           H + + +          + + +++   ++N    + +H    K ADQ+W V         
Sbjct: 280 HHTNLSAITTFYVSDNILVSGSENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LV 338

Query: 144 VSVGEDKAVHMYSY 157
            +V +D    +   
Sbjct: 339 AAVEKDGQSFLEIL 352

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.1 bits (89), Expect = 1e-04
 Identities = 8/66 (12%), Positives = 20/66 (30%), Gaps = 11/66 (16%)

Query: 58  SIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASAD 108
              +    + + SG+ +   NI++  +G          +  + S  F        +   D
Sbjct: 287 ITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGKT-LVAAVEKD 344

Query: 109 HTVRVW 114
               + 
Sbjct: 345 GQSFLE 350

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.9 bits (130), Expect = 5e-10
 Identities = 30/120 (25%), Positives = 44/120 (36%), Gaps = 21/120 (17%)

Query: 13  DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA 72
                     D+ V+SGS    I L+ +E G   ++ +  G   L      D   I SGA
Sbjct: 178 KRGIACLQYRDRLVVSGSSDNTIRLWDIECGACLRVLE--GHEELVRCIRFDNKRIVSGA 235

Query: 73  LDGIINIFDANT-----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWN 115
            DG I ++D                     HS  V    F  D    +S+S D T+ +W+
Sbjct: 236 YDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDTILIWD 293

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.1 bits (128), Expect = 1e-09
 Identities = 28/158 (17%), Positives = 53/158 (33%), Gaps = 20/158 (12%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL 73
               V   DDKY++S S    I ++   T +  +  +  G              + SG+ 
Sbjct: 139 AAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLN--GHKRGIACLQYRDRLVVSGSS 196

Query: 74  DGIINIFDANT------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK- 126
           D  I ++D               L      D K  +S + D  ++VW+     +      
Sbjct: 197 DNTIRLWDIECGACLRVLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAG 256

Query: 127 ---------HADQVWCVCVAPDGDKFVSVGEDKAVHMY 155
                    H+ +V+ +    D  + VS   D  + ++
Sbjct: 257 TLCLRTLVEHSGRVFRL--QFDEFQIVSSSHDDTILIW 292

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (107), Expect = 6e-07
 Identities = 11/60 (18%), Positives = 21/60 (35%), Gaps = 3/60 (5%)

Query: 77  INIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVC 135
           +      +  S  V       D +  +S   D+T+++W+    E       H   V C+ 
Sbjct: 5   LQRIHCRSETSKGV--YCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQ 62

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 18/112 (16%), Positives = 42/112 (37%), Gaps = 7/112 (6%)

Query: 64  DGHWIASGALDGIINIFDANTGHSSWVLSTA------FTRDGKFFISASADHTVRVWNFA 117
           D  +I S + D  I +++ +T      L+             +  +S S+D+T+R+W+  
Sbjct: 147 DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLWDIE 206

Query: 118 RRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG 169
               +   +  +++       D  + VS   D  + ++      +     G 
Sbjct: 207 CGACLRVLEGHEELVRCIR-FDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT 257

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.4 bits (82), Expect = 0.001
 Identities = 25/156 (16%), Positives = 53/156 (33%), Gaps = 6/156 (3%)

Query: 19  FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYST----DGHWIASGALD 74
              DD+ ++SG +   I ++   T + ++I        L + Y       G   ++  + 
Sbjct: 21  LQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQYDERVIITGSSDSTVRVW 80

Query: 75  GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN--MHTFKHADQVW 132
            +      NT             +    ++ S D ++ VW+ A   +  +       +  
Sbjct: 81  DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAA 140

Query: 133 CVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG 168
              V  D    VS   D+ + +++    E V    G
Sbjct: 141 VNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNG 176

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 54.6 bits (129), Expect = 6e-10
 Identities = 12/54 (22%), Positives = 24/54 (44%), Gaps = 2/54 (3%)

Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCV 136
           GH+  + + + + DGK   SA A+  +  W+ +   +   F   HA  +  +  
Sbjct: 10  GHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKT 63

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.0 bits (104), Expect = 1e-06
 Identities = 11/60 (18%), Positives = 26/60 (43%), Gaps = 10/60 (16%)

Query: 66  HWIASGALDGIINIFDANTG----------HSSWVLSTAFTRDGKFFISASADHTVRVWN 115
             +A+G+LD  + +++ N            H+   +++    +    +SA  D  ++ WN
Sbjct: 237 VRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 40.7 bits (93), Expect = 4e-05
 Identities = 12/59 (20%), Positives = 23/59 (38%), Gaps = 3/59 (5%)

Query: 101 FFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYS 156
              + S D++V VWN  +  +        HA       +  +    VS G+D  +  ++
Sbjct: 238 RLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 38.0 bits (86), Expect = 3e-04
 Identities = 21/120 (17%), Positives = 40/120 (33%), Gaps = 1/120 (0%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF-DTRGKFTLSIAYSTDGHWIASGAL 73
             +  S D K + S    G IN + + TG   ++F D        I  ++ G        
Sbjct: 16  TALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDLFTVSWD 75

Query: 74  DGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC 133
           D +  +    +G  S              ++ SAD  + V    +   +++     +V  
Sbjct: 76  DHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPI 135

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 36.9 bits (83), Expect = 7e-04
 Identities = 11/70 (15%), Positives = 26/70 (37%), Gaps = 2/70 (2%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG--KFTLSIAYSTDGHWIASG 71
           +  V +SPD+  + +GS    + ++ +       I         +++     +   I S 
Sbjct: 227 VACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSA 286

Query: 72  ALDGIINIFD 81
             D  I  ++
Sbjct: 287 GQDSNIKFWN 296

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.6 bits (77), Expect = 0.004
 Identities = 5/43 (11%), Positives = 12/43 (27%)

Query: 127 HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG 169
           H   +  +  + DG    S   +  ++ +         V    
Sbjct: 11  HNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDV 53

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 53.6 bits (127), Expect = 2e-09
 Identities = 16/131 (12%), Positives = 38/131 (29%), Gaps = 13/131 (9%)

Query: 50  DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGK 100
                      +  D    A+  L       D  TG          +    +   +    
Sbjct: 205 HEFSMLYTIARFKDDKQDPATADLLYGYLSVDLKTGKTHTQEFADLTELYFTGLRSPKDP 264

Query: 101 FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY---SY 157
             I     + +  ++  +R+ +         +CV     GDK    G    + ++   + 
Sbjct: 265 NQIYGV-LNRLAKYDLKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAVFNPDTL 323

Query: 158 KPEEEVEVNGG 168
           +  + +++ GG
Sbjct: 324 EKVKNIKLPGG 334

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 47.4 bits (111), Expect = 2e-07
 Identities = 21/183 (11%), Positives = 50/183 (27%), Gaps = 31/183 (16%)

Query: 17  VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWI-ASGALD 74
                  +Y++  +    +++  V +  + +           +   + D           
Sbjct: 2   PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHY 61

Query: 75  GIINIFDANTG--------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE 120
           G I   D +T                   + S A + DGK   +          ++  + 
Sbjct: 62  GDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKP 121

Query: 121 NM---------------HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEV 165
                             TF    QV+ +  A DG  +V+  +   + + + K    + +
Sbjct: 122 PRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMDVKTGKYTVALPL 181

Query: 166 NGG 168
              
Sbjct: 182 RNW 184

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 45.5 bits (106), Expect = 9e-07
 Identities = 9/89 (10%), Positives = 23/89 (25%), Gaps = 3/89 (3%)

Query: 94  AFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDK-FVSVGEDK 150
           A     ++ I  +  + + V + A      +             +APD    +V      
Sbjct: 3   ALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYG 62

Query: 151 AVHMYSYKPEEEVEVNGGGGEEEEEEQMV 179
            ++       +            E  + +
Sbjct: 63  DIYGIDLDTCKNTFHANLSSVPGEVGRSM 91

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 36.3 bits (82), Expect = 0.001
 Identities = 22/169 (13%), Positives = 46/169 (27%), Gaps = 26/169 (15%)

Query: 15  WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFD------TRGKFTLSIAYSTDGHW 67
              + +PD++      +  G I    ++T K     +        G+   S A S DG  
Sbjct: 43  GTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLSSVPGEVGRSMYSFAISPDGKE 102

Query: 68  IASGALD------------GIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTV---- 111
           + +                  + +F    G  +  + T       + + A+ D ++    
Sbjct: 103 VYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAG 162

Query: 112 ---RVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
                 +    +        +       APD   F      +      Y
Sbjct: 163 PDIYKMDVKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQSPRHEFSMLY 211

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

 Score = 35.1 bits (79), Expect = 0.003
 Identities = 5/39 (12%), Positives = 13/39 (33%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG 53
           + V F      +  G     + ++  +T +  +     G
Sbjct: 295 YCVAFDKKGDKLYLGGTFNDLAVFNPDTLEKVKNIKLPG 333

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 51.8 bits (122), Expect = 7e-09
 Identities = 17/72 (23%), Positives = 30/72 (41%), Gaps = 2/72 (2%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKF 143
           HS  V    ++ DG    SASAD T+++WN A  +   T       +   + +       
Sbjct: 237 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 296

Query: 144 VSVGEDKAVHMY 155
           VS+  +  ++  
Sbjct: 297 VSISANGFINFV 308

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 2e-07
 Identities = 9/72 (12%), Positives = 18/72 (25%), Gaps = 2/72 (2%)

Query: 90  VLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGE 148
            +    T  G      +   +V         +   +  H+ Q      +P G    S   
Sbjct: 20  AVVLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDV 78

Query: 149 DKAVHMYSYKPE 160
              V ++     
Sbjct: 79  HGNVRIWDTTQT 90

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 47.2 bits (110), Expect = 3e-07
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 9/65 (13%)

Query: 60  AYSTDGHWIASGALDGIINIFDANTG---------HSSWVLSTAFTRDGKFFISASADHT 110
            +S DG  IAS + D  I I++  T                        +  +S SA+  
Sbjct: 245 TWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGF 304

Query: 111 VRVWN 115
           +   N
Sbjct: 305 INFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 46.0 bits (107), Expect = 5e-07
 Identities = 13/99 (13%), Positives = 26/99 (26%), Gaps = 13/99 (13%)

Query: 51  TRGKFTLSIAYSTDGHWIASGALDGIINIFDAN--------TGHSSWVLSTAFTRDGKFF 102
            RG   + +  +  G  I       +               T HS        +  G + 
Sbjct: 16  ARGT-AVVLGNTPAGDKIQYCNGTSVY-TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYC 73

Query: 103 ISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAP 138
            S      VR+W+  +  ++        +  V  +    
Sbjct: 74  ASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDS 112

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 45.7 bits (106), Expect = 7e-07
 Identities = 14/69 (20%), Positives = 29/69 (42%), Gaps = 1/69 (1%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFT-LSIAYSTDGHWIASGA 72
           ++ + +SPD   + S S    I ++ V T K+E+      +     +        + S +
Sbjct: 241 VFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSIS 300

Query: 73  LDGIINIFD 81
            +G IN  +
Sbjct: 301 ANGFINFVN 309

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 1/120 (0%)

Query: 16  NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG 75
            +  +P    +   +    +    V +    +I+      T     S  G++ ASG + G
Sbjct: 22  VLGNTPAGDKIQYCN-GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHG 80

Query: 76  IINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVC 135
            + I+D          +          IS  ++          RE        D      
Sbjct: 81  NVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNG 140

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 355

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 50.6 bits (119), Expect = 2e-08
 Identities = 18/162 (11%), Positives = 34/162 (20%), Gaps = 22/162 (13%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL------------EQI 48
              I+           V  +   K       SG                         Q 
Sbjct: 194 EFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQ 253

Query: 49  FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------HSSWVLSTAFTRDGK- 100
                                       + + DA TG           + S   ++D K 
Sbjct: 254 VAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKP 313

Query: 101 -FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDG 140
             +  ++ D T+ + +    E + +          +  A  G
Sbjct: 314 LLYALSTGDKTLYIHDAESGEELRSVNQLGHGPQVITTADMG 355

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 48.8 bits (115), Expect = 8e-08
 Identities = 14/181 (7%), Positives = 26/181 (14%), Gaps = 35/181 (19%)

Query: 10  GPVDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWI 68
           G              ++ L    +G    +    G    +  + G F         G   
Sbjct: 20  GSSCDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLSLAVAGHSGSDF 79

Query: 69  A----------SGALDGIINIFDANTGHSSWVL---------------STAFTRDGKF-F 102
           A           G     + +FD  T      +                           
Sbjct: 80  ALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLL 139

Query: 103 ISASADHTVRVWNFARRENMHTFK--------HADQVWCVCVAPDGDKFVSVGEDKAVHM 154
                       +     +    K                  +       S         
Sbjct: 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAA 199

Query: 155 Y 155
            
Sbjct: 200 G 200

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.7 bits (107), Expect = 7e-07
 Identities = 17/184 (9%), Positives = 43/184 (23%), Gaps = 34/184 (18%)

Query: 17  VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGI 76
            + S       S   +       V      Q    +   + +   +  G  + + A   +
Sbjct: 179 YLGSCPASLAASDLAAAPAAAGIVGA----QCTGAQNCSSQAAQANYPGMLVWAVASSIL 234

Query: 77  INIFDANT--------GHSSWVLSTAFTRDGKFFISASAD-------------------H 109
                A          G+ S   +  F   G   ++   +                    
Sbjct: 235 QGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAE 294

Query: 110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDK--FVSVGEDKAVHMYSYKPEEEV-EVN 166
                  +  +      +      +  A DG    + +    + + +Y    +++   V 
Sbjct: 295 NTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVE 354

Query: 167 GGGG 170
              G
Sbjct: 355 LDKG 358

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} Length = 368

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.1 bits (82), Expect = 0.001
 Identities = 9/87 (10%), Positives = 29/87 (33%), Gaps = 9/87 (10%)

Query: 62  STDGHWIASGALDGIINIFDANTG-------HSSWVLSTAFTRDGK--FFISASADHTVR 112
            T  H  +  A     +   A+ G       +     +    +DG    + +++    + 
Sbjct: 281 LTVEHSRSCLAAAENTSSVTASVGQTSGPISNGHDSDAIIAAQDGASDNYANSAGTEVLD 340

Query: 113 VWNFARRENMHTFKHADQVWCVCVAPD 139
           +++ A  ++  + +       + V  +
Sbjct: 341 IYDAASDQDQSSVELDKGPESLSVQNE 367

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.6 bits (111), Expect = 2e-07
 Identities = 15/74 (20%), Positives = 28/74 (37%), Gaps = 4/74 (5%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---KHADQVWCVCVAPDGDK 142
                +      D + F +  AD T+RVW+    + +  +   K       V V   G+ 
Sbjct: 250 PVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNG 309

Query: 143 F-VSVGEDKAVHMY 155
             +S+  D  ++ Y
Sbjct: 310 RIISLSLDGTLNFY 323

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.9 bits (104), Expect = 1e-06
 Identities = 16/117 (13%), Positives = 33/117 (28%), Gaps = 24/117 (20%)

Query: 51  TRGKFTLSIAYSTDGHWIASGALDG-IINIFDANTG-----------HSSWVLSTAF--T 96
            R   T  ++Y    + IA        +   D                SS V +  F   
Sbjct: 16  QRNFTT-HLSYDPTTNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI 74

Query: 97  RDGKFFISASADHTVRVWNFARRENMHTFK---------HADQVWCVCVAPDGDKFV 144
           +  ++  S      V VW +   +  ++ +          A  +  +    +G +  
Sbjct: 75  KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLC 131

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.2 bits (97), Expect = 1e-05
 Identities = 11/67 (16%), Positives = 16/67 (23%), Gaps = 11/67 (16%)

Query: 60  AYSTDGHWIASGALDGIINIFDANTG----------HSSWVLSTAFT-RDGKFFISASAD 108
               D    A+   D  I ++D  T                             IS S D
Sbjct: 258 LSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD 317

Query: 109 HTVRVWN 115
            T+  + 
Sbjct: 318 GTLNFYE 324

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.3 bits (92), Expect = 6e-05
 Identities = 14/72 (19%), Positives = 28/72 (38%), Gaps = 5/72 (6%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF----DTRGKFTLSIAYSTDGHWIA 69
               +   D +   +      I ++ V T K  Q +       G   + +  + +G  I 
Sbjct: 254 GIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGR-II 312

Query: 70  SGALDGIINIFD 81
           S +LDG +N ++
Sbjct: 313 SLSLDGTLNFYE 324

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.5 bits (111), Expect = 2e-07
 Identities = 17/93 (18%), Positives = 30/93 (32%), Gaps = 16/93 (17%)

Query: 85  GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARREN-------MHTFKHADQVWCVCV- 136
            H + + S +      F +S S D  ++VW+    +N          F H   +  V V 
Sbjct: 12  AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69

Query: 137 ------APDGDKFVSVGEDKAVHMYSYKPEEEV 163
                 A +     +      +  Y    E+E 
Sbjct: 70  QAIERDAFELCLVATTSFSGDLLFYRITREDET 102

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 45.6 bits (106), Expect = 9e-07
 Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 5/67 (7%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQV----WCVCVAPDG 140
           HSSWV+S +F   G+   SA  D  +R W+   +E + T   H D +      + V   G
Sbjct: 288 HSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHG 347

Query: 141 DKFVSVG 147
           D     G
Sbjct: 348 DSLAEPG 354

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.5 bits (98), Expect = 1e-05
 Identities = 14/108 (12%), Positives = 33/108 (30%), Gaps = 11/108 (10%)

Query: 14  MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF----DTRGKFTLSIAYSTDGHWIA 69
           + ++ F+   + + S    GK+  + V+T +         D        +A    G  +A
Sbjct: 292 VMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAVDEHGDSLA 351

Query: 70  SGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA 117
              +  +  +            S       +       D ++R +  A
Sbjct: 352 EPGVFDVKFLKKG-------WRSGMGADLNESLCCVCLDRSIRWFREA 392

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 41.8 bits (96), Expect = 2e-05
 Identities = 14/156 (8%), Positives = 35/156 (22%), Gaps = 37/156 (23%)

Query: 20  SPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINI 79
           S  + + +S S  G + ++  +    E             +YS   H      +      
Sbjct: 21  SACNSFTVSCSGDGYLKVWDNKLLDNE--------NPKDKSYSHFVHKSGLHHV------ 66

Query: 80  FDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-----------HA 128
                             +     + S    +  +   R +                   
Sbjct: 67  -------DVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKK 119

Query: 129 DQVWCVCVAPDGD-----KFVSVGEDKAVHMYSYKP 159
              W +      D     + V+       +++ + P
Sbjct: 120 HSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHP 155

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 36.0 bits (81), Expect = 0.001
 Identities = 21/204 (10%), Positives = 53/204 (25%), Gaps = 51/204 (25%)

Query: 4   ISKINVGPVDMWNVV--FSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAY 61
           + K  +  VD+   +   + +   V + S SG +  Y +      +         L    
Sbjct: 58  VHKSGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDM 117

Query: 62  STDGHW---------------IASGALDGIINIFDANTG--------------------- 85
                W               + +  + G   I+  +                       
Sbjct: 118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTV 177

Query: 86  -----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-------KHADQVWC 133
                 S +  S   +  G    +   + TV++   +    ++ F        +++ +  
Sbjct: 178 ESPMTPSQFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRS 236

Query: 134 VCVAPDGDKFVSVGEDKAVHMYSY 157
           V  +P G       +  +    + 
Sbjct: 237 VKFSPQGSLLAIAHDSNSFGCITL 260

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 47.3 bits (110), Expect = 2e-07
 Identities = 13/67 (19%), Positives = 25/67 (37%), Gaps = 10/67 (14%)

Query: 58  SIAYSTDGHWIASGALDGIINIFDANT---------GHSSWVLSTAFTRDGKFFISASAD 108
           +     +   +A+G+LD  I I+              H   V +  +       +S+ AD
Sbjct: 220 ANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPST-LVSSGAD 278

Query: 109 HTVRVWN 115
             ++ WN
Sbjct: 279 ACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 44.6 bits (103), Expect = 2e-06
 Identities = 10/73 (13%), Positives = 23/73 (31%), Gaps = 3/73 (4%)

Query: 86  HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HADQVWCVCVAPDGDKF 143
             +   +     +     + S D  + +++  R   +      H D V  +         
Sbjct: 214 KPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TL 272

Query: 144 VSVGEDKAVHMYS 156
           VS G D  +  ++
Sbjct: 273 VSSGADACIKRWN 285

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 43.4 bits (100), Expect = 4e-06
 Identities = 8/57 (14%), Positives = 20/57 (35%), Gaps = 8/57 (14%)

Query: 84  TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDG 140
           +GH+  + +          IS S D  +  W+ +     H+    + +  +  +   
Sbjct: 10  SGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHS----NLIVSLDNSKAQ 58

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 34.9 bits (78), Expect = 0.004
 Identities = 10/99 (10%), Positives = 31/99 (31%), Gaps = 7/99 (7%)

Query: 42  TGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT---GHSSWVLSTAFTRD 98
             ++ +      K   ++  +     + SG+ DG I  + +++    HS+ ++S   ++ 
Sbjct: 2   HDEVLKTISGHNKGITALTVNP----LISGSYDGRIMEWSSSSMHQDHSNLIVSLDNSKA 57

Query: 99  GKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVA 137
            ++   +  D                   +         
Sbjct: 58  QEYSSISWDDTLKVNGITKHEFGSQPKVASANNDGFTAV 96

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 47.3 bits (111), Expect = 3e-07
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 2/74 (2%)

Query: 94  AFTRDGK--FFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKA 151
               D    F ++      + + +   ++ +        V    ++  G   + +G D  
Sbjct: 25  LNDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYAVHISRMSASGRYLLVIGRDAR 84

Query: 152 VHMYSYKPEEEVEV 165
           + M     +E  +V
Sbjct: 85  IDMIDLWAKEPTKV 98

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} Length = 426

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 44.6 bits (104), Expect = 2e-06
 Identities = 24/172 (13%), Positives = 51/172 (29%), Gaps = 16/172 (9%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK-----F 55
            K +  I+ G   +     S   +Y+L   +  +I++  +   +  ++ + +        
Sbjct: 52  KKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSV 110

Query: 56  TLSIAYSTDGHW-IASGALDGIINIFDANTGHSSWVL---------STAFTRDGKFFISA 105
             S     +  + IA         I D  T     ++          T         I A
Sbjct: 111 ESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIA 170

Query: 106 SADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
           S +H   + N      +    + D       +     F++ G   + H Y  
Sbjct: 171 SHEHPEFIVNVKETGKVLLVNYKDIDNLTVTSIGAAPFLADGGWDSSHRYFM 222

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 45.6 bits (106), Expect = 9e-07
 Identities = 15/130 (11%), Positives = 35/130 (26%), Gaps = 10/130 (7%)

Query: 50  DTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRD-------GKFF 102
            +    T       D       A    +   D  TG  +                     
Sbjct: 194 SSGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEMAMREVRIMDVFYFSTAVNPAKT 253

Query: 103 ISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY---SYKP 159
            +  A + +  ++  +  ++         + V V+ DG      G    +  Y   + + 
Sbjct: 254 RAFGAYNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEK 313

Query: 160 EEEVEVNGGG 169
           + +V++ G  
Sbjct: 314 KGQVDLPGNA 323

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 42.1 bits (97), Expect = 1e-05
 Identities = 22/168 (13%), Positives = 40/168 (23%), Gaps = 27/168 (16%)

Query: 15  WNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFD-----TRGKFTLSIAYSTDGHWI 68
              + +P  +    + ++S  +    + TG+     D      R K     A S DG  +
Sbjct: 37  MVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERVKSLFGAALSPDGKTL 96

Query: 69  ASGALDGIINIFDANTGHS-------------------SWVLSTAFTRDGKFFISASADH 109
           A       + +       +                     +   A+ RDG        D 
Sbjct: 97  AIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGRDL 156

Query: 110 TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY 157
            V          +               PD     +  E   V    +
Sbjct: 157 HVMDPE--AGTLVEDKPIQSWEAETYAQPDVLAVWNQHESSGVMATPF 202

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 39.4 bits (90), Expect = 1e-04
 Identities = 8/111 (7%), Positives = 30/111 (27%), Gaps = 17/111 (15%)

Query: 67  WIASGALDGIINIFDANTG----------HSSWVLSTAFTRDGKF-FISASADHTVRVWN 115
           +I + A    + + D                   +       G+  + + +   ++   +
Sbjct: 3   YILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKID 62

Query: 116 FARRENMHTFK------HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE 160
               E +              ++   ++PDG           + +  ++ +
Sbjct: 63  LVTGETLGRIDLSTPEERVKSLFGAALSPDGKTLAIYESPVRLELTHFEVQ 113

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 13/46 (28%), Positives = 21/46 (45%)

Query: 15  WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
           ++V  S D   V  G   G +  Y  ET + +   D  G  ++S+A
Sbjct: 283 YSVNVSTDGSTVWLGGALGDLAAYDAETLEKKGQVDLPGNASMSLA 328

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} Length = 337

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

 Score = 36.7 bits (83), Expect = 8e-04
 Identities = 9/75 (12%), Positives = 23/75 (30%), Gaps = 4/75 (5%)

Query: 100 KFFISASADHTVRVWNFARRENMHTFKHADQ---VWCVCVAPDGDK-FVSVGEDKAVHMY 155
            + ++ +    + V +  +         AD         VAP G   + +V + +++   
Sbjct: 2   DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKI 61

Query: 156 SYKPEEEVEVNGGGG 170
                E +       
Sbjct: 62  DLVTGETLGRIDLST 76

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 41.4 bits (95), Expect = 2e-05
 Identities = 10/56 (17%), Positives = 20/56 (35%), Gaps = 1/56 (1%)

Query: 102 FISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDK-FVSVGEDKAVHMYS 156
           +I+ S    + V +    +   T           ++PDG K +V+      V +  
Sbjct: 5   YIANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIID 60

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 37.5 bits (85), Expect = 4e-04
 Identities = 11/48 (22%), Positives = 17/48 (35%), Gaps = 1/48 (2%)

Query: 86  HSSWVLSTAFTRDGKF-FISASADHTVRVWNFARRENMHTFKHADQVW 132
                   A T DGK  +++ S  +TV V + A      T       +
Sbjct: 242 VGPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMAVGKNPY 289

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} Length = 301

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

 Score = 36.0 bits (81), Expect = 0.002
 Identities = 9/74 (12%), Positives = 24/74 (32%), Gaps = 8/74 (10%)

Query: 70  SGALDGIINIFDANTG-------HSSWVLSTAFTRDGKF-FISASADHTVRVWNFARREN 121
           + +    I++ D  +          S  +    + DG   +++ +  + V + + A    
Sbjct: 7   ANSESDNISVIDVTSNKVTATIPVGSNPMGAVISPDGTKVYVANAHSNDVSIIDTATNNV 66

Query: 122 MHTFKHADQVWCVC 135
           + T         V 
Sbjct: 67  IATVPAGSSPQGVA 80

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 41.4 bits (97), Expect = 2e-05
 Identities = 20/138 (14%), Positives = 45/138 (32%), Gaps = 10/138 (7%)

Query: 23  DKYVL--SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIF 80
           D+Y    SG   G++ + GV + +           + +    T+     S  + G    +
Sbjct: 9   DEYYGFWSGGHQGEVRVLGVPSMRELMRIPVFNVDSATGWGITN----ESKEILGGDQQY 64

Query: 81  DANTGHSSWVLSTAFTRDGKF-FISASADHTVRVWNFA--RRENMHTFKHADQVWCVCVA 137
                H   +  T    DGK+ FI+  A+  V        + + +    +   +  + + 
Sbjct: 65  LNGDCHHPHISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQ 124

Query: 138 PDGDK-FVSVGEDKAVHM 154
                 +V    +  +  
Sbjct: 125 KVPKTNYVFCNAEFVIPQ 142

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 39.5 bits (92), Expect = 1e-04
 Identities = 26/161 (16%), Positives = 49/161 (30%), Gaps = 41/161 (25%)

Query: 2   KQISKINVGPVDMWNVVFSPDDKY-VLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
           +    I V   +   +  SPD KY + +G  S  +++  ++  KL+ +F+ + +   +I 
Sbjct: 249 EFTRYIPVPK-NPHGLNTSPDGKYFIANGKLSPTVSVIAID--KLDDLFEDKIELRDTIV 305

Query: 61  YSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFISASADHTVRVWNFA--- 117
              +                          L T F   G  + +   D  V  WN A   
Sbjct: 306 AEPELGLGP---------------------LHTTFDGRGNAYTTLFIDSQVCKWNIADAI 344

Query: 118 ------------RRENMHTFK-HADQVWCVCVAPDGDKFVS 145
                       ++ ++     H           DG   V 
Sbjct: 345 KHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVV 385

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} Length = 441

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

 Score = 35.7 bits (82), Expect = 0.002
 Identities = 18/128 (14%), Positives = 38/128 (29%), Gaps = 14/128 (10%)

Query: 1   MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIA 60
           M    ++ V   ++ N       KY  S   + +  +    T + ++ +          A
Sbjct: 166 MDVAWQVIVDG-NLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAA 224

Query: 61  YSTDGHWIASGALDGIINIFDA---------NTGHSSWVLSTAFTRDGKFFI-SASADHT 110
               G++   G    +  +                +        + DGK+FI +     T
Sbjct: 225 AVKAGNFKTIGD-SKVPVVDGRGESEFTRYIPVPKNPH--GLNTSPDGKYFIANGKLSPT 281

Query: 111 VRVWNFAR 118
           V V    +
Sbjct: 282 VSVIAIDK 289

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 37.9 bits (86), Expect = 3e-04
 Identities = 14/65 (21%), Positives = 25/65 (38%), Gaps = 4/65 (6%)

Query: 102 FISASADHTVRVWNFARRENM---HTFKHADQVWCVCVAPDGDK-FVSVGEDKAVHMYSY 157
           +I++     + VWN      +          QV  + V+PD    +V V  +  V  Y  
Sbjct: 7   YIASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRI 66

Query: 158 KPEEE 162
            P++ 
Sbjct: 67  APDDG 71

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} Length = 333

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

 Score = 35.2 bits (79), Expect = 0.003
 Identities = 9/101 (8%), Positives = 25/101 (24%), Gaps = 15/101 (14%)

Query: 70  SGALDGIINIFDANT----------GHSSWVLSTAFTRDGKF-FISASADHTVRVWNFAR 118
           +      I++++ N                V     + D ++ ++    +  V  +  A 
Sbjct: 9   ASPESQQIHVWNLNHEGALTLTQVVDVPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAP 68

Query: 119 RENMHTFKHADQV----WCVCVAPDGDKFVSVGEDKAVHMY 155
            +   TF     +      +     G        +      
Sbjct: 69  DDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSV 109

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	181
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.97
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1nr0a1	311	Actin interacting protein 1 {Nematode (Caenorhabdi	99.96
d1tbga_	340	beta1-subunit of the signal-transducing G protein	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1k8kc_	371	Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur	99.95
d1gxra_	337	Groucho/tle1, C-terminal domain {Human (Homo sapie	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.95
d1vyhc1	317	Platelet-activating factor acetylhydrolase IB subu	99.94
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.94
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.94
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1nr0a2	299	Actin interacting protein 1 {Nematode (Caenorhabdi	99.93
d1erja_	388	Tup1, C-terminal domain {Baker's yeast (Saccharomy	99.93
d1sq9a_	393	Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac	99.92
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.92
d1pgua1	325	Actin interacting protein 1 {Baker's yeast (Saccha	99.91
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.89
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.89
d2ovrb2	342	F-box/WD repeat-containing protein 7, FBXW7 {Human	99.88
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.88
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.88
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.87
d1pgua2	287	Actin interacting protein 1 {Baker's yeast (Saccha	99.87
d1k32a3	360	Tricorn protease domain 2 {Archaeon Thermoplasma a	99.86
d1nexb2	355	Cdc4 propeller domain {Baker's yeast (Saccharomyce	99.86
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.85
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.81
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.8
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.77
d1yfqa_	342	Cell cycle arrest protein BUB3 {Baker's yeast (Sac	99.76
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.76
d1p22a2	293	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	99.75
d1qksa2	432	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.75
d1pbyb_	337	Quinohemoprotein amine dehydrogenase B chain {Para	99.72
d1l0qa2	301	Surface layer protein {Archaeon Methanosarcina maz	99.68
d1hzua2	426	C-terminal (heme d1) domain of cytochrome cd1-nitr	99.68
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1ri6a_	333	Putative isomerase YbhE {Escherichia coli [TaxId:	99.58
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.51
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.47
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.46
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.44
d2madh_	373	Methylamine dehydrogenase, H-chain {Gram negative	99.43
d1jmxb_	346	Quinohemoprotein amine dehydrogenase B chain {Pseu	99.33
d2bbkh_	355	Methylamine dehydrogenase, H-chain {Paracoccus den	99.24
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	99.22
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	99.13
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	99.1
d1mdah_	368	Methylamine dehydrogenase, H-chain {Paracoccus den	99.03
d2bgra1	470	Dipeptidyl peptidase IV/CD26, N-terminal domain {P	99.03
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	99.0
d1qnia2	441	Nitrous oxide reductase, N-terminal domain {Pseudo	98.91
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	98.88
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.87
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.86
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.85
d1rwia_	260	Serine/threonine-protein kinase PknD {Mycobacteriu	98.84
d2p4oa1	302	Hypothetical protein All0351 homologue {Nostoc pun	98.71
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.7
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.67
d1jofa_	365	3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu	98.61
d1pjxa_	314	Diisopropylfluorophosphatase (phosphotriesterase,	98.56
d1xfda1	465	Dipeptidyl aminopeptidase-like protein 6, DPP6, N-	98.49
d2dg1a1	319	Lactonase Drp35 {Staphylococcus aureus [TaxId: 128	98.44
d1q7fa_	279	Brain tumor cg10719-pa {Fruit fly (Drosophila mela	98.39
d2hqsa1	269	TolB, C-terminal domain {Escherichia coli [TaxId:	98.35
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	98.23
d2ghsa1	295	Regucalcin {Agrobacterium tumefaciens [TaxId: 358]	97.85
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.73
d1k32a2	281	Tricorn protease N-terminal domain {Archaeon Therm	97.52
d1fwxa2	459	Nitrous oxide reductase, N-terminal domain {Paraco	97.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	97.07
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	96.98
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.87
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	96.83
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	96.71
d1k3ia3	387	Galactose oxidase, central domain {Fungi (Fusarium	96.67
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	96.62
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.58
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	96.43
d1npea_	263	Nidogen {Mouse (Mus musculus) [TaxId: 10090]}	96.33
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.97
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	95.55
d2ad6a1	571	Methanol dehydrogenase, heavy chain {Methylophilus	95.46
d1kv9a2	560	Quinoprotein alcohol dehydrogenase, N-terminal dom	95.09
d1h6la_	353	Thermostable phytase (3-phytase) {Bacillus amyloli	95.03
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	94.92
d1utca2	327	Clathrin heavy-chain terminal domain {Rat (Rattus	94.63
d1ijqa1	266	Low density lipoprotein (LDL) receptor {Human (Hom	94.37
d1qfma1	430	Prolyl oligopeptidase, N-terminal domain {Pig (Sus	93.8
d1w6sa_	596	Methanol dehydrogenase, heavy chain {Methylobacter	93.29
d1flga_	582	Ethanol dehydrogenase {Pseudomonas aeruginosa [Tax	91.88
d1v04a_	340	Serum paraoxonase/arylesterase 1, PON1 {Rabit (Ory	87.52
d1kb0a2	573	Quinoprotein alcohol dehydrogenase, N-terminal dom	86.47
d1kj1a_	109	Lectin (agglutinin) {Garlic (Allium sativum) [TaxI	85.05
d1xipa_	381	Nucleoporin NUP159 {Baker's yeast (Saccharomyces c	83.14
d1crua_	450	Soluble quinoprotein glucose dehydrogenase {Acinet	81.6

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.97  E-value=1.3e-27  Score=177.67  Aligned_cols=167  Identities=20%  Similarity=0.373  Sum_probs=146.2

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      ....+..+...|++++|+|++++|++|+.||+|++||+.+++....+..+...+.+++|+|+++++++++.|+.+.+|+.
T Consensus        47 ~~~tL~GH~~~I~~l~~s~~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~~v~~v~~~~~~~~l~~~~~d~~i~~~~~  126 (340)
T d1tbga_          47 TRRTLRGHLAKIYAMHWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNL  126 (340)
T ss_dssp             EEEEECCCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEEECSCSCEEEEEECTTSSEEEEEETTCCEEEEES
T ss_pred             eeEEECCCCCCEEEEEECCCCCEEEEEECCCceeeeecccceeEEEEecccccEEeeEeeccceeeeeecccceeecccc
Confidence            44557788899999999999999999999999999999999999888888888899999999999999999999988873


Q ss_pred             CC------------------------------------------------------------------------------
Q psy10953         83 NT------------------------------------------------------------------------------   84 (181)
Q Consensus        83 ~~------------------------------------------------------------------------------   84 (181)
                      ..                                                                              
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~  206 (340)
T d1tbga_         127 KTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDA  206 (340)
T ss_dssp             SSSCSCCCEEEEECCCSSCEEEEEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEECTTSSEEEEEETTT
T ss_pred             cccccccccceecccccccccccccccccccccccccccccccccccccccccccccceeEeeeccccccceeEEeecCc
Confidence            20                                                                              


Q ss_pred             -----------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEE
Q psy10953         85 -----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        85 -----------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~  144 (181)
                                       +|...|.+++|+|++++|++++.|+.|++||+........+.   +...+.+++|+|++++|+
T Consensus       207 ~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~s~~~~~l~  286 (340)
T d1tbga_         207 SAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICGITSVSFSKSGRLLL  286 (340)
T ss_dssp             EEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCTTCCSCEEEEEECSSSCEEE
T ss_pred             eEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccccccccccccCceEEEEECCCCCEEE
Confidence                             134467889999999999999999999999999887766653   456799999999999999


Q ss_pred             EEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        145 SVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       145 ~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      +++.|+.|++|++.+++.+....+.
T Consensus       287 ~g~~dg~i~iwd~~~~~~~~~~~~H  311 (340)
T d1tbga_         287 AGYDDFNCNVWDALKADRAGVLAGH  311 (340)
T ss_dssp             EEETTSCEEEEETTTCCEEEEECCC
T ss_pred             EEECCCEEEEEECCCCcEEEEEcCC
Confidence            9999999999999998888766653

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=5e-27  Score=176.56  Aligned_cols=152  Identities=21%  Similarity=0.347  Sum_probs=137.5

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      .....+...+.+++|+++++.+++++.|+++++||+++++.+..+... ..+.+++|+|++++|++++.|+.+++||+..
T Consensus       177 ~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~~-~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~  255 (337)
T d1gxra_         177 RQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREGRQLQQHDFT-SQIFSLGYCPTGEWLAVGMESSNVEVLHVNK  255 (337)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECS-SCEEEEEECTTSSEEEEEETTSCEEEEETTS
T ss_pred             ccccccccccccccccccccccccccccccccccccccceeecccccc-cceEEEEEcccccccceeccccccccccccc
Confidence            344445667899999999999999999999999999999988777644 4567999999999999999999999999874


Q ss_pred             -------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         85 -------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        85 -------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                             .|...|.+++|+|++++|++++.|+.|++||+.+++.+....|...|++++|+|++++|++++.|+.|++|++
T Consensus       256 ~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~~~~~~~~~~~~~~v~~~~~s~d~~~l~t~s~D~~I~vWdl  335 (337)
T d1gxra_         256 PDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDDKYIVTGSGDKKATVYEV  335 (337)
T ss_dssp             SCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSCEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred             cccccccccccccceEEECCCCCEEEEEeCCCeEEEEECCCCCEEEEccCCCCEEEEEEeCCCCEEEEEeCCCeEEEEEE
Confidence                   4667899999999999999999999999999999998888889999999999999999999999999999986

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.3e-26  Score=173.24  Aligned_cols=163  Identities=21%  Similarity=0.232  Sum_probs=139.4

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEEecCCceEEEEEECCCCCEEEEeeC--CCcEEEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE--QIFDTRGKFTLSIAYSTDGHWIASGAL--DGIINIF   80 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~--~~~~~~~~~~~~~~~s~d~~~l~~~~~--d~~v~i~   80 (181)
                      ..++.+...+.+++|+|+|++|++|+.|++|++||+.+++..  ..+..+...+.+++|+|++++|++++.  +..+++|
T Consensus        52 ~~~~~H~~~v~~~~~sp~g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~  131 (311)
T d1nr0a1          52 EIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSGPVKDISWDSESKRIAAVGEGRERFGHVF  131 (311)
T ss_dssp             EEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEESSSTTCCEEEEEECSSSCEEEEEECTTSCEEEEEECCSSCSEEEE
T ss_pred             EEEcCCCCCEEEEEEeCCCCeEeccccCceEeeeeeeccccccccccccccCcccccccccccccccccccccccccccc
Confidence            445667788999999999999999999999999999877643  445666777889999999999998875  5668999


Q ss_pred             eCCC--------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCC
Q psy10953         81 DANT--------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDK  150 (181)
Q Consensus        81 d~~~--------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~  150 (181)
                      +..+        +|...|.+++|+|+++ .+++++.|+.|++||+++++....+. |...|++++++|+++++++++.|+
T Consensus       132 ~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~  211 (311)
T d1nr0a1         132 LFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDG  211 (311)
T ss_dssp             ETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEEEEEECCCSSCEEEEEECTTSSEEEEEETTS
T ss_pred             ccccccccccccccccccccccccccceeeecccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            9864        4567899999999998 58889999999999999988777765 778899999999999999999999


Q ss_pred             cEEEEeCCCCeeEEEcC
Q psy10953        151 AVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       151 ~v~i~~~~~~~~~~~~~  167 (181)
                      .|++|+...+..+....
T Consensus       212 ~v~~~d~~~~~~~~~~~  228 (311)
T d1nr0a1         212 TIVLYNGVDGTKTGVFE  228 (311)
T ss_dssp             CEEEEETTTCCEEEECB
T ss_pred             ccccccccccccccccc
Confidence            99999998877665443

>d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.96  E-value=1.4e-26  Score=173.04  Aligned_cols=163  Identities=20%  Similarity=0.338  Sum_probs=140.9

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCE-EEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQ--SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW-IASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~~~~~d~~v~i~d~~   83 (181)
                      +..+...+.+++|+|+++++++++.  +..+++|+.++++....+..+...+.+++|+|++++ |++|+.|+.+++||.+
T Consensus        98 ~~~~~~~v~~v~~s~d~~~l~~~~~~~~~~~~v~~~~~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~  177 (311)
T d1nr0a1          98 IPVFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGP  177 (311)
T ss_dssp             EECSSSCEEEEEECTTSCEEEEEECCSSCSEEEEETTTCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETT
T ss_pred             cccccCccccccccccccccccccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc
Confidence            4556677899999999999998876  456999999999888877777778889999999985 7889999999999997


Q ss_pred             C--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--------cCCcEEEEEEccCCCEEEEEc
Q psy10953         84 T--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--------HADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        84 ~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--------~~~~v~~~~~sp~g~~l~~~~  147 (181)
                      +        .|...|.++.|+|+++++++++.|+.+++||+.++.....+.        |...|++++|+|++++|++++
T Consensus       178 ~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~~V~~~~~s~~~~~l~tgs  257 (311)
T d1nr0a1         178 PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASAS  257 (311)
T ss_dssp             TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEE
T ss_pred             ccccccccccccccccccccCccccccccccccccccccccccccccccccccccccccccccccccccCCCCCEEEEEe
Confidence            4        467889999999999999999999999999998877665542        567899999999999999999


Q ss_pred             CCCcEEEEeCCCCeeEEEcCCC
Q psy10953        148 EDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       148 ~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      .|+.|++||+.+++.+.....+
T Consensus       258 ~Dg~v~iwd~~t~~~~~~l~~~  279 (311)
T d1nr0a1         258 ADKTIKIWNVATLKVEKTIPVG  279 (311)
T ss_dssp             TTSEEEEEETTTTEEEEEEECC
T ss_pred             CCCeEEEEECCCCcEEEEEECC
Confidence            9999999999999877655443

>d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: beta1-subunit of the signal-transducing G protein heterotrimer
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.8e-26  Score=171.42  Aligned_cols=148  Identities=20%  Similarity=0.394  Sum_probs=135.0

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC---
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG---   85 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~---   85 (181)
                      .....+....+.+++.++++++.|+.|++||+++++....+..+...+.+++|+|++++|++++.|+.+++||+...   
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~~  261 (340)
T d1tbga_         182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQEL  261 (340)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEE
T ss_pred             ccceeEeeeccccccceeEEeecCceEEEEECCCCcEEEEEeCCCCCeEEEEECCCCCEEEEEeCCCeEEEEeecccccc
Confidence            34455678889999999999999999999999999999888888888889999999999999999999999998642   


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                             +...+..++|+|++++|++++.|+.|++||+.+++.+..+. |...|++++|+|++++|++|+.|+.|++||
T Consensus       262 ~~~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~iwd~~~~~~~~~~~~H~~~V~~l~~s~d~~~l~s~s~Dg~v~iWd  340 (340)
T d1tbga_         262 MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN  340 (340)
T ss_dssp             EEECCTTCCSCEEEEEECSSSCEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred             cccccccccCceEEEEECCCCCEEEEEECCCEEEEEECCCCcEEEEEcCCCCCEEEEEEeCCCCEEEEEccCCEEEEeC
Confidence                   34568999999999999999999999999999999888886 888999999999999999999999999997

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.4e-26  Score=176.41  Aligned_cols=166  Identities=15%  Similarity=0.213  Sum_probs=137.3

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe--cCCceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD--TRGKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      ++..+..+...|.+++|+|++++|++++.|++|++||+.+++....+.  .+...+.+++|+|+++.|++++.|+.+++|
T Consensus        43 ~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~  122 (371)
T d1k8kc_          43 QVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRWAPNEKKFAVGSGSRVISIC  122 (371)
T ss_dssp             EEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEECTTSSEEEEEETTSSEEEE
T ss_pred             EEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccccccccccccccccccccccccceeecccCcceee
Confidence            455566778889999999999999999999999999998877654443  345567899999999999999999999999


Q ss_pred             eCCC------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCc------------------eeeee-ecCC
Q psy10953         81 DANT------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRE------------------NMHTF-KHAD  129 (181)
Q Consensus        81 d~~~------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~------------------~~~~~-~~~~  129 (181)
                      +...            +|...|.+++|+|++++|++++.|+.+++||.....                  .+... .|..
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (371)
T d1k8kc_         123 YFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCG  202 (371)
T ss_dssp             EEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTTTSCCCCCBTTBSCCCTTCEEEECCCCSS
T ss_pred             eeecccccccccccccccccccccccccccccceeccccCcEEEEEeeccCccccccccccccccccceeeeeeccCccC
Confidence            8642            356789999999999999999999999999975421                  12222 3667


Q ss_pred             cEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        130 QVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       130 ~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      .+.+++|+|+|+++++++.|+.|++|++..+..+....+
T Consensus       203 ~v~~~~~s~~g~~l~s~~~d~~i~iwd~~~~~~~~~~~~  241 (371)
T d1k8kc_         203 WVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLAS  241 (371)
T ss_dssp             CEEEEEECSSSSEEEEEETTTEEEEEEGGGTTEEEEEEC
T ss_pred             cEEEEEeecccccccccccCCcceEEeeecccceeeeec
Confidence            799999999999999999999999999988766654433

>d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Arp2/3 complex 41 kDa subunit ARPC1
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.95  E-value=1.1e-26  Score=177.04  Aligned_cols=147  Identities=10%  Similarity=0.118  Sum_probs=127.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcE--EEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKL--EQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT------   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~--~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~------   84 (181)
                      ++.+++|+|||++||+|+.|+.|++||+.+++.  ...+..|...+.+++|+|++++|++++.|+.+++||+..      
T Consensus         9 pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~~~~~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd~~~~~~~~~   88 (371)
T d1k8kc_           9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWTLKGRTWKPT   88 (371)
T ss_dssp             CCCEEEECTTSSEEEEECSSSEEEEEEEETTEEEEEEEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEEEETTEEEEE
T ss_pred             CeEEEEECCCCCEEEEEeCCCEEEEEECCCCCEEEEEEecCCCCCEEEEEECCCCCEEEEEECCCeEEEEeecccccccc
Confidence            378999999999999999999999999988864  455666777889999999999999999999999999753      


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee-----ecCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF-----KHADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~-----~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                          +|...|.+++|+|+++.+++++.|+.+++|++.........     .|...|.+++|+|++++|++++.|+.|++|
T Consensus        89 ~~~~~~~~~v~~i~~~p~~~~l~~~s~d~~i~i~~~~~~~~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~  168 (371)
T d1k8kc_          89 LVILRINRAARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF  168 (371)
T ss_dssp             EECCCCSSCEEEEEECTTSSEEEEEETTSSEEEEEEETTTTEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccccccccccceeecccCcceeeeeecccccccccccccccccccccccccccccceeccccCcEEEEE
Confidence                45677999999999999999999999999998765432221     266789999999999999999999999999


Q ss_pred             eCCC
Q psy10953        156 SYKP  159 (181)
Q Consensus       156 ~~~~  159 (181)
                      +...
T Consensus       169 ~~~~  172 (371)
T d1k8kc_         169 SAYI  172 (371)
T ss_dssp             ECCC
T ss_pred             eecc
Confidence            9754

>d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Groucho/tle1, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=3.8e-25  Score=166.18  Aligned_cols=163  Identities=20%  Similarity=0.316  Sum_probs=146.0

Q ss_pred             eeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC
Q psy10953          6 KINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG   85 (181)
Q Consensus         6 ~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~   85 (181)
                      .+..+...+..++|+|++.++++++.|+.|++|++.+++.......+...+.+++|++++..+++++.|+.+++||++++
T Consensus       136 ~~~~~~~~v~~~~~~~~~~~l~s~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~l~~s~~~~~~~~~~~d~~v~i~d~~~~  215 (337)
T d1gxra_         136 ELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDLREG  215 (337)
T ss_dssp             EEECSSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTT
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            44456667889999999999999999999999999999988877777777889999999999999999999999999764


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                             +...|.+++|+|+++++++++.|+.+++||+..........|...|.+++|+|+|++|++++.|+.|++|+..
T Consensus       216 ~~~~~~~~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~iwd~~  295 (337)
T d1gxra_         216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTP  295 (337)
T ss_dssp             EEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETT
T ss_pred             eeecccccccceEEEEEcccccccceeccccccccccccccccccccccccccceEEECCCCCEEEEEeCCCeEEEEECC
Confidence                   4667899999999999999999999999999998877777788999999999999999999999999999999


Q ss_pred             CCeeEEEcCC
Q psy10953        159 PEEEVEVNGG  168 (181)
Q Consensus       159 ~~~~~~~~~~  168 (181)
                      .++.+....+
T Consensus       296 ~~~~~~~~~~  305 (337)
T d1gxra_         296 YGASIFQSKE  305 (337)
T ss_dssp             TCCEEEEEEC
T ss_pred             CCCEEEEccC
Confidence            8877654433

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.95  E-value=1.5e-25  Score=164.03  Aligned_cols=153  Identities=22%  Similarity=0.391  Sum_probs=136.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC------------------
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG------------------   65 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~------------------   65 (181)
                      +..+..+...+..++|+|+++++++++.|+.|++|++.+++....+..+...+.++.++|++                  
T Consensus       136 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  215 (317)
T d1vyhc1         136 VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVVECISWAPESSYSSISEATGSETKKSGK  215 (317)
T ss_dssp             EEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEEECCCSSCEEEEEECCSCGGGGGGGCCSCC------
T ss_pred             eeEEccCCCcceeeecccCCCEEEEEeCCCeEEEEeeccceeeEEEecCCCCceEEEEeeccccceeeccccceeeeecc
Confidence            44555667778999999999999999999999999999999888887777777788887753                  


Q ss_pred             --CEEEEeeCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEE
Q psy10953         66 --HWIASGALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCV  134 (181)
Q Consensus        66 --~~l~~~~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~  134 (181)
                        ..+++++.|+.+++||..+        +|...|.+++|+|++++|++++.|+.|++||+.+++.+..+. |...|+++
T Consensus       216 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~V~~~  295 (317)
T d1vyhc1         216 PGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSL  295 (317)
T ss_dssp             -CCEEEEEETTSEEEEEETTTTEEEEEEECCSSCEEEEEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSSCEEEE
T ss_pred             CCceeEeccCCCEEEEEECCCCcEEEEEeCCCCCEEEEEECCCCCEEEEEECCCeEEEEECCCCcEEEEEcCCCCCEEEE
Confidence              4688899999999999975        467789999999999999999999999999999998888886 78899999


Q ss_pred             EEccCCCEEEEEcCCCcEEEEe
Q psy10953        135 CVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                      +|+|++++|++++.|+.|++|+
T Consensus       296 ~~s~~~~~l~s~s~Dg~i~iWd  317 (317)
T d1vyhc1         296 DFHKTAPYVVTGSVDQTVKVWE  317 (317)
T ss_dssp             EECSSSSCEEEEETTSEEEEEC
T ss_pred             EEcCCCCEEEEEeCCCeEEEeC
Confidence            9999999999999999999996

>d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Platelet-activating factor acetylhydrolase IB subunit alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.94  E-value=8e-25  Score=160.14  Aligned_cols=164  Identities=24%  Similarity=0.357  Sum_probs=147.8

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT   84 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~   84 (181)
                      ..+..+...|.+++|+|++++|++|+.|++|++||+.+++.+..+..+...+.+++++|++..++++..++.+..|+...
T Consensus        11 ~~L~GH~~~I~~l~~sp~~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~   90 (317)
T d1vyhc1          11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLWDFQG   90 (317)
T ss_dssp             CEEECCSSCEEEEEECSSSSEEEEEESSSCEEEEETTTCCCCEEECCCSSCEEEEEECTTSSEEEEEETTSCCCEEETTS
T ss_pred             EEEcCCCCCeEEEEEcCCCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCcEEEEeeecccccccccccccccccccccc
Confidence            45777888999999999999999999999999999999999998888888889999999999999999999999998753


Q ss_pred             --------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         85 --------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        85 --------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                              ++...+..+.++|+++.+++++.|+.+++||+.++.....+. |...+.+++++|++++|++++.|+.|++|
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~v~~~  170 (317)
T d1vyhc1          91 FECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVW  170 (317)
T ss_dssp             SCEEECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEECTTSSEEEEEETTSCEEEE
T ss_pred             cccccccccccccceeeeccCCCceEEeeccCcceeEeecccceeeeEEccCCCcceeeecccCCCEEEEEeCCCeEEEE
Confidence                    466778999999999999999999999999999988877775 77789999999999999999999999999


Q ss_pred             eCCCCeeEEEcCC
Q psy10953        156 SYKPEEEVEVNGG  168 (181)
Q Consensus       156 ~~~~~~~~~~~~~  168 (181)
                      ++..+..+....+
T Consensus       171 ~~~~~~~~~~~~~  183 (317)
T d1vyhc1         171 VVATKECKAELRE  183 (317)
T ss_dssp             ETTTCCEEEEECC
T ss_pred             eeccceeeEEEec
Confidence            9988876655443

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.94  E-value=3.3e-25  Score=169.95  Aligned_cols=161  Identities=17%  Similarity=0.297  Sum_probs=128.6

Q ss_pred             CeeeEEEEEEcCC-----CCEEEEEeCCCcEEEEeCCCCc------------EE---EEE---ecCCceEEEEEECCCCC
Q psy10953         10 GPVDMWNVVFSPD-----DKYVLSGSQSGKINLYGVETGK------------LE---QIF---DTRGKFTLSIAYSTDGH   66 (181)
Q Consensus        10 ~~~~~~~~~~s~~-----g~~l~~~~~d~~i~~~d~~~~~------------~~---~~~---~~~~~~~~~~~~s~d~~   66 (181)
                      .+..++.++|.++     +.++++++.|+++++|++....            ..   ...   ..+...+.+++|+|++ 
T Consensus       118 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~i~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg-  196 (393)
T d1sq9a_         118 KKHSFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESPMTPSQFATSVDISERG-  196 (393)
T ss_dssp             GGSCEEEEEEECCC----CEEEEEEETTSCEEEEEEESSSSHHHHTTTCCCCEEEEEEEECCSSSSCCCCCEEEECTTS-
T ss_pred             CCCceEEEEEecCCCcccccEEEEEcCCCcEEEEEeecCCcccceeeeeeccceecccceecccCCCCcEEEEEECCCC-
Confidence            3444677788765     4678999999999999974321            01   111   1123446689999998 


Q ss_pred             EEEEeeCCCcEEEEeCCC--------------CCcccEEEEEEcCCCCEEEEEeCCCc---EEEEecCCCceeeee----
Q psy10953         67 WIASGALDGIINIFDANT--------------GHSSWVLSTAFTRDGKFFISASADHT---VRVWNFARRENMHTF----  125 (181)
Q Consensus        67 ~l~~~~~d~~v~i~d~~~--------------~~~~~v~~~~~s~~~~~l~~~~~d~~---i~v~d~~~~~~~~~~----  125 (181)
                      +|++|+.|+.|++||+.+              +|...|.+++|+|+|++|++++.|++   |++||+.+++.+..+    
T Consensus       197 ~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~~~g~~~~~l~~~~  276 (393)
T d1sq9a_         197 LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPT  276 (393)
T ss_dssp             EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEETTTCCEEEEECBC-
T ss_pred             EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeecccccceeeeeecccc
Confidence            789999999999999863              46778999999999999999998874   899999987766554    


Q ss_pred             ----------ecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCCCc
Q psy10953        126 ----------KHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGGGE  171 (181)
Q Consensus       126 ----------~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~~~  171 (181)
                                .|.+.|++++|+|++++|+++|.|+.|++||+.+++.+..+.++.+
T Consensus       277 ~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~  332 (393)
T d1sq9a_         277 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCD  332 (393)
T ss_dssp             -------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGG
T ss_pred             ccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCC
Confidence                      3778899999999999999999999999999999998877765443

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.94  E-value=1.5e-24  Score=159.66  Aligned_cols=159  Identities=19%  Similarity=0.251  Sum_probs=132.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe-cCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD-TRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~-~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      .+.++.+...|.+++|+|||++|++|+.|++|++||+++++....+. .|...+.+++|+|+++ +++++.|+.+++|+.
T Consensus         5 ~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~~~g~-~~~~~~d~~v~~~~~   83 (299)
T d1nr0a2           5 DQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGD-LFTVSWDDHLKVVPA   83 (299)
T ss_dssp             EEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEECTTSC-EEEEETTTEEEEECS
T ss_pred             ceEcCCCCCCcEEEEECCCCCEEEEEcCCCeEEEEECCCCcEEEEEcCCCCCcEEEEEeeccce-eecccceeeEEEecc
Confidence            35577888899999999999999999999999999999999887664 4667788999999997 556777999999986


Q ss_pred             CCC------------------------------------------------CcccEEEEEEcCCCCEEEEEeCCCcEEEE
Q psy10953         83 NTG------------------------------------------------HSSWVLSTAFTRDGKFFISASADHTVRVW  114 (181)
Q Consensus        83 ~~~------------------------------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~  114 (181)
                      ...                                                ....+..++|+|+++++++++.|+.+++|
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~s~~g~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~~~  163 (299)
T d1nr0a2          84 GGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVY  163 (299)
T ss_dssp             SSSSSCTTSCCEEECSSCEEEEEECTTSSCEEEEESSEEEEEETTEEEEEECSSCEEEEEECTTSCEEEEEETTSEEEEE
T ss_pred             CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            310                                                01124567899999999999999999999


Q ss_pred             ecCCCcee--eeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        115 NFARRENM--HTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       115 d~~~~~~~--~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      |+.+++..  ....|...|.+++|+|+++++++++.|+.|++|++..+.++
T Consensus       164 d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~  214 (299)
T d1nr0a2         164 KLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFEL  214 (299)
T ss_dssp             EEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            99876543  33457889999999999999999999999999998765544

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=4.7e-24  Score=161.74  Aligned_cols=159  Identities=28%  Similarity=0.500  Sum_probs=120.4

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEE--------------------
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA--------------------   69 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~--------------------   69 (181)
                      +...+.+++|+|+|++|++|+.|++|++||...++....+..+...+.++.+++++..++                    
T Consensus       120 ~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~  199 (388)
T d1erja_         120 SDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSL  199 (388)
T ss_dssp             CCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEE
T ss_pred             CCCCEEEEEECCCCCcceecccccccccccccccccccccccccccccccccccccccccccccceeeeeeecccccccc
Confidence            445589999999999999999999999999998887766665555555555555554444                    


Q ss_pred             ----------------------EeeCCCcEEEEeCCC---------------CCcccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         70 ----------------------SGALDGIINIFDANT---------------GHSSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        70 ----------------------~~~~d~~v~i~d~~~---------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                                            +++.|+.+++||..+               +|...|.+++|+|++++|++++.|+.|+
T Consensus       200 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~  279 (388)
T d1erja_         200 TLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVK  279 (388)
T ss_dssp             EEECSSCEEEEEECSTTCCEEEEEETTSCEEEEETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETTSEEE
T ss_pred             ccccccccccccccCCCCCeEEEEcCCCeEEEeecccCccceeeccccccccCCCCCEEEEEECCCCCEEEEEECCCcEE
Confidence                                  444455555554432               2455789999999999999999999999


Q ss_pred             EEecCCCcee------------e-eeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        113 VWNFARRENM------------H-TFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       113 v~d~~~~~~~------------~-~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +||+......            . ...|...|.+++|+|++++|++++.|+.|++||+.+++.+....+
T Consensus       280 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~  348 (388)
T d1erja_         280 LWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQG  348 (388)
T ss_dssp             EEEC---------------CEEEEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEEC
T ss_pred             EEeccCCccccccccccccceeeecccccceEEEEEECCCCCEEEEEeCCCEEEEEECCCCcEEEEEeC
Confidence            9998754321            1 123677899999999999999999999999999999988765544

>d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.93  E-value=1.9e-24  Score=159.02  Aligned_cols=145  Identities=20%  Similarity=0.347  Sum_probs=119.7

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE-EecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQI-FDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANT-------   84 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~-~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-------   84 (181)
                      ...+++|+|+++++++++.|+.|++||+++++.... ...+...+.+++|+|++++|++++.|+.+++||+.+       
T Consensus       138 ~~~~~~~s~~~~~l~~g~~dg~i~~~d~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~~~~~  217 (299)
T d1nr0a2         138 NSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHT  217 (299)
T ss_dssp             CEEEEEECTTSCEEEEEETTSEEEEEEEETTEEEEEEEEECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTEESCC
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            357899999999999999999999999988876543 234566678999999999999999999999999742       


Q ss_pred             ----CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee---ecC-CcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         85 ----GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF---KHA-DQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        85 ----~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~---~~~-~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                          +|...|.+++|+|++++|++++.|+.|++||+.++......   .+. ..+.++ +++++++|++++.|+.|++|+
T Consensus       218 ~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~~~~~~~~~~~~~~v~~~-~~~~~~~l~s~s~D~~i~iWd  296 (299)
T d1nr0a2         218 NSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSV-IWLNETTIVSAGQDSNIKFWN  296 (299)
T ss_dssp             CCCCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTSCCEEETTSSTTSCEEEE-EEEETTEEEEEETTSCEEEEE
T ss_pred             ccccccccccccccccccccceEEEcCCCEEEEEECCCCCcceEEEecCCCCCcEEEE-EECCCCEEEEEeCCCEEEEEe
Confidence                36678999999999999999999999999999876533322   233 345555 567788999999999999999


Q ss_pred             CC
Q psy10953        157 YK  158 (181)
Q Consensus       157 ~~  158 (181)
                      +.
T Consensus       297 l~  298 (299)
T d1nr0a2         297 VP  298 (299)
T ss_dssp             CC
T ss_pred             cc
Confidence            73

>d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Tup1, C-terminal domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.93  E-value=1.2e-23  Score=159.43  Aligned_cols=155  Identities=29%  Similarity=0.469  Sum_probs=132.1

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec------------------CCceEEEEEECCCCCEEEEe
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT------------------RGKFTLSIAYSTDGHWIASG   71 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~------------------~~~~~~~~~~s~d~~~l~~~   71 (181)
                      +...|.+++|||||++|++|+ |++|++||+.+++....+..                  +...+.+++|+|++++|+++
T Consensus        61 H~~~V~~l~fs~dg~~lasg~-d~~i~iW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l~~s~~~~~l~s~  139 (388)
T d1erja_          61 HTSVVCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATG  139 (388)
T ss_dssp             CSSCCCEEEECTTSSEEEEEC-BSCEEEEETTTCCEEEEECC-----------------CCCCBEEEEEECTTSSEEEEE
T ss_pred             CCCcEEEEEECCCCCEEEEEe-CCeEEEEEecccceEeeecccccccccccccccccccCCCCCEEEEEECCCCCcceec
Confidence            566789999999999999987 88999999999887765532                  23347789999999999999


Q ss_pred             eCCCcEEEEeCCC--------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEcc-CCCE
Q psy10953         72 ALDGIINIFDANT--------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAP-DGDK  142 (181)
Q Consensus        72 ~~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp-~g~~  142 (181)
                      +.|+.|++||...        +|...|.++.+++++..+++++.++.+++||..+........+.....+++++| ++++
T Consensus       140 ~~dg~v~i~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~  219 (388)
T d1erja_         140 AEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKY  219 (388)
T ss_dssp             ETTSCEEEEETTTTEEEEEECCCSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEEEEEEECSSCEEEEEECSTTCCE
T ss_pred             ccccccccccccccccccccccccccccccccccccccccccccceeeeeeeccccccccccccccccccccccCCCCCe
Confidence            9999999999864        467889999999999999999999999999999888777776666666666665 7889


Q ss_pred             EEEEcCCCcEEEEeCCCCeeEEE
Q psy10953        143 FVSVGEDKAVHMYSYKPEEEVEV  165 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~~~~~~~  165 (181)
                      |++++.|+.|++|+..++..+..
T Consensus       220 l~~~~~d~~i~i~~~~~~~~~~~  242 (388)
T d1erja_         220 IAAGSLDRAVRVWDSETGFLVER  242 (388)
T ss_dssp             EEEEETTSCEEEEETTTCCEEEE
T ss_pred             EEEEcCCCeEEEeecccCcccee
Confidence            99999999999999988766543

>d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Antiviral protein Ski8 (Ski8p)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=9.1e-24  Score=161.82  Aligned_cols=132  Identities=23%  Similarity=0.409  Sum_probs=107.9

Q ss_pred             eeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe------cCCceEEEEEECCCCCEEEEeeCCCc---EEEEeC
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD------TRGKFTLSIAYSTDGHWIASGALDGI---INIFDA   82 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~------~~~~~~~~~~~s~d~~~l~~~~~d~~---v~i~d~   82 (181)
                      ..+.+++|+|++ +|++|+.|++|++||+++++.+..+.      .|...+.+++|+|||++|++|+.|++   +++||+
T Consensus       185 ~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~~~~~~~~~~~l~~h~~~V~~l~~spdg~~l~sgs~D~t~~~i~lwd~  263 (393)
T d1sq9a_         185 QFATSVDISERG-LIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYET  263 (393)
T ss_dssp             CCCCEEEECTTS-EEEEECTTSEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEETTEEEEEEEET
T ss_pred             CcEEEEEECCCC-EEEEEeCCCcEEEEeecccccccccccccccccccceEEEcccccccceeeeecCCCCcceeeeccc
Confidence            336789999997 88999999999999999998765544      34567889999999999999998874   899998


Q ss_pred             CC---------------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEE----EEEE
Q psy10953         83 NT---------------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVW----CVCV  136 (181)
Q Consensus        83 ~~---------------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~----~~~~  136 (181)
                      .+                     +|...|.+++|+|++++|++++.|++|++||+++++.+.++. |.+.|.    .++|
T Consensus       264 ~~g~~~~~l~~~~~~~~~~~~~~gH~~~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~~~v~~~~~~~~~  343 (393)
T d1sq9a_         264 EFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDIEIEEDILAV  343 (393)
T ss_dssp             TTCCEEEEECBC--------CCBSBSSCEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCGGGCSSGGGCCCB
T ss_pred             ccceeeeeeccccccccceeeeecccCceeeeccCCCCCeeEEECCCCEEEEEECCCCCEEEEECCcCCcccCCccEEEE
Confidence            64                     577889999999999999999999999999999998888775 544432    3455


Q ss_pred             ccCCCEEE
Q psy10953        137 APDGDKFV  144 (181)
Q Consensus       137 sp~g~~l~  144 (181)
                      +|++..++
T Consensus       344 ~~~~~~~~  351 (393)
T d1sq9a_         344 DEHGDSLA  351 (393)
T ss_dssp             CTTSCBCS
T ss_pred             CCCCCEEE
Confidence            55554443

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=1.1e-23  Score=155.32  Aligned_cols=167  Identities=13%  Similarity=0.103  Sum_probs=124.1

Q ss_pred             CcceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEE---EecCCceEEEEEECCCC-CEEEEeeCCCc
Q psy10953          1 MKQISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQI---FDTRGKFTLSIAYSTDG-HWIASGALDGI   76 (181)
Q Consensus         1 ~~~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~---~~~~~~~~~~~~~s~d~-~~l~~~~~d~~   76 (181)
                      |+.++-++.+...|++|+|+|++++|++|+.|++|++||+++++....   ...|...+.+++|+|++ .+|++|+.|+.
T Consensus         1 ~~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~~V~~v~f~~~~~~~l~sg~~d~~   80 (342)
T d1yfqa_           1 MQIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKHPLLCCNFIDNTDLQIYVGTVQGE   80 (342)
T ss_dssp             CEEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSSCEEEEEEEESSSEEEEEEETTSC
T ss_pred             CCeEEcCCCCCCCEEEEEEeCCCCEEEEEECCCeEEEEEccCCCcceEEEEecCCCCCEEEEEEeCCCCCEEEEcccccc
Confidence            778888888999999999999999999999999999999976543221   12366678899999875 57889999999


Q ss_pred             EEEEeCCCCCc---------------------------------------------------------ccEEEEEEcCCC
Q psy10953         77 INIFDANTGHS---------------------------------------------------------SWVLSTAFTRDG   99 (181)
Q Consensus        77 v~i~d~~~~~~---------------------------------------------------------~~v~~~~~s~~~   99 (181)
                      +.+|+......                                                         .......+.+.+
T Consensus        81 v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (342)
T d1yfqa_          81 ILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNS  160 (342)
T ss_dssp             EEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTBCEEEEESCSSSSSSCCCEEEEEECS
T ss_pred             eeeeecccccccccccccccccccccccccccccccccccccccceeeccccccceeeecccccccccceeeeeeeeccC
Confidence            99999753100                                                         001122445666


Q ss_pred             CEEEEEeCCCcEEEEecCCCceee-----------------------------------e--------------------
Q psy10953        100 KFFISASADHTVRVWNFARRENMH-----------------------------------T--------------------  124 (181)
Q Consensus       100 ~~l~~~~~d~~i~v~d~~~~~~~~-----------------------------------~--------------------  124 (181)
                      ..+++++.|+.|++||+.......                                   .                    
T Consensus       161 ~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~  240 (342)
T d1yfqa_         161 SRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRC  240 (342)
T ss_dssp             SEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEEC
T ss_pred             CceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceeeccccceeee
Confidence            777888888888888864311000                                   0                    


Q ss_pred             -------eecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        125 -------FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       125 -------~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                             ..|...+++++|+|++++|++|+.||.|++||+.+++.+....
T Consensus       241 ~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~  290 (342)
T d1yfqa_         241 HRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFA  290 (342)
T ss_dssp             CCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECC
T ss_pred             eeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEec
Confidence                   0012246789999999999999999999999999988876554

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.92  E-value=6.7e-23  Score=153.44  Aligned_cols=159  Identities=14%  Similarity=0.180  Sum_probs=132.3

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeC--CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCE-EEEeeCCCcEEEEeCCC-
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQ--SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHW-IASGALDGIINIFDANT-   84 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~--d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~-l~~~~~d~~v~i~d~~~-   84 (181)
                      .+...+.+++|+|+|+++++++.  ++.+++|+.++++....+..|...+.+++|+|++.. +++++.|+.+++||... 
T Consensus       113 ~~~~~v~~v~~s~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~  192 (325)
T d1pgua1         113 VLAGPISDISWDFEGRRLCVVGEGRDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPF  192 (325)
T ss_dssp             CCSSCEEEEEECTTSSEEEEEECCSSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTB
T ss_pred             cccCcEEEEEECCCCCccceeeccccceEEEEeecccccceeeeecccccccccccccccceEEEeeccccccccccccc
Confidence            34456789999999999987654  678999999999998888878888889999999875 66799999999999753 


Q ss_pred             ----------CCcccEEEEEEcCC-CCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEc---cCCCEEEEEcCC
Q psy10953         85 ----------GHSSWVLSTAFTRD-GKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVA---PDGDKFVSVGED  149 (181)
Q Consensus        85 ----------~~~~~v~~~~~s~~-~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~s---p~g~~l~~~~~d  149 (181)
                                +|...|.+++|+|+ ++++++++.|+.|++||+++++.+..+. |...+.++.|+   |+|++|++++.|
T Consensus       193 ~~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~~v~~~~~s~~~~dg~~l~s~s~D  272 (325)
T d1pgua1         193 KFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWLDSQKFATVGAD  272 (325)
T ss_dssp             EEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTBCCCSCEEEEEESSSSEEEEEETT
T ss_pred             ccceecccccCCCCccEEeeeccccceeccccccccceeeeeeccccccccccccccccccceeeeeccCCCEEEEEeCC
Confidence                      35677999999997 6899999999999999999998887775 55555444444   789999999999


Q ss_pred             CcEEEEeCCCCeeEEEcC
Q psy10953        150 KAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       150 ~~v~i~~~~~~~~~~~~~  167 (181)
                      +.|++|++.+++.+....
T Consensus       273 ~~i~iwd~~~~~~~~~~~  290 (325)
T d1pgua1         273 ATIRVWDVTTSKCVQKWT  290 (325)
T ss_dssp             SEEEEEETTTTEEEEEEE
T ss_pred             CeEEEEECCCCCEEEEEE
Confidence            999999999988776443

>d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.91  E-value=3.8e-22  Score=149.30  Aligned_cols=164  Identities=20%  Similarity=0.246  Sum_probs=130.0

Q ss_pred             eeccCe-eeEEEEEEcC--CCCEEEEEeCCCcEEEEeCCCCcEE--------EEEecCCceEEEEEECCCCCEEEEee--
Q psy10953          6 KINVGP-VDMWNVVFSP--DDKYVLSGSQSGKINLYGVETGKLE--------QIFDTRGKFTLSIAYSTDGHWIASGA--   72 (181)
Q Consensus         6 ~~~~~~-~~~~~~~~s~--~g~~l~~~~~d~~i~~~d~~~~~~~--------~~~~~~~~~~~~~~~s~d~~~l~~~~--   72 (181)
                      .+..+. ..+.+++|+|  +|++|++|+.||+|++||+..++..        ..+..+...+.+++|+++++++++++  
T Consensus        57 ~~~gh~~~~v~~v~fsP~~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~s~~~~~l~~~~~~  136 (325)
T d1pgua1          57 QFTGHGSSVVTTVKFSPIKGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISWDFEGRRLCVVGEG  136 (325)
T ss_dssp             EECTTTTSCEEEEEECSSTTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEECTTSSEEEEEECC
T ss_pred             EEeCCCCCCEEEEEEeeCCCCCEEEEEeCCCCEEEeeecCCcceeeeecccccccccccCcEEEEEECCCCCccceeecc
Confidence            344443 4589999998  6789999999999999998755432        22334555678999999999988765  


Q ss_pred             CCCcEEEEeCCC--------CCcccEEEEEEcCCCC-EEEEEeCCCcEEEEecCCCceeeee----ecCCcEEEEEEccC
Q psy10953         73 LDGIINIFDANT--------GHSSWVLSTAFTRDGK-FFISASADHTVRVWNFARRENMHTF----KHADQVWCVCVAPD  139 (181)
Q Consensus        73 ~d~~v~i~d~~~--------~~~~~v~~~~~s~~~~-~l~~~~~d~~i~v~d~~~~~~~~~~----~~~~~v~~~~~sp~  139 (181)
                      .++.+.+|+..+        +|...|.+++|+|++. .+++++.|+.+++||....+.....    .+...|.+++|+|+
T Consensus       137 ~~~~~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~v~~v~~~pd  216 (325)
T d1pgua1         137 RDNFGVFISWDSGNSLGEVSGHSQRINACHLKQSRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEFSPD  216 (325)
T ss_dssp             SSCSEEEEETTTCCEEEECCSCSSCEEEEEECSSSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEECST
T ss_pred             ccceEEEEeecccccceeeeecccccccccccccccceEEEeecccccccccccccccceecccccCCCCccEEeeeccc
Confidence            467889998763        4677899999999987 4778999999999999887655544    25667999999997


Q ss_pred             -CCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        140 -GDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       140 -g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                       ++++++++.|+.|++|++.+++.+....+.
T Consensus       217 ~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~  247 (325)
T d1pgua1         217 SGEFVITVGSDRKISCFDGKSGEFLKYIEDD  247 (325)
T ss_dssp             TCCEEEEEETTCCEEEEETTTCCEEEECCBT
T ss_pred             cceeccccccccceeeeeecccccccccccc
Confidence             678999999999999999998887766543

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.8e-21  Score=141.32  Aligned_cols=140  Identities=23%  Similarity=0.370  Sum_probs=116.2

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----------
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----------   85 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----------   85 (181)
                      ...+++++.++++++.|++|++||++.++.+..+..+...+.++.++  +++|++++.|+.+++||....          
T Consensus       180 ~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~~--~~~l~s~s~d~~i~iwd~~~~~~~~~~~~~~  257 (342)
T d2ovrb2         180 VYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--DNILVSGNADSTVKIWDIKTGQCLQTLQGPN  257 (342)
T ss_dssp             EEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEEE--TTEEEEEETTSCEEEEETTTCCEEEEECSTT
T ss_pred             cccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEecC--CCEEEEEcCCCEEEEEecccccccccccccc
Confidence            34456689999999999999999999999988888777777666654  579999999999999998642          


Q ss_pred             -CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee------cCCcEEEEEEccCCCEEEEEcCCCc----EEE
Q psy10953         86 -HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK------HADQVWCVCVAPDGDKFVSVGEDKA----VHM  154 (181)
Q Consensus        86 -~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~------~~~~v~~~~~sp~g~~l~~~~~d~~----v~i  154 (181)
                       |...+.++.+  +++++++++.||.|++||+++++.+..+.      |...|++++|+|++.++++|+.||.    |++
T Consensus       258 ~~~~~~~~~~~--~~~~~~s~s~Dg~i~iwd~~tg~~i~~~~~~~~~~~~~~v~~v~~s~~~~~la~g~~dGt~~~~l~~  335 (342)
T d2ovrb2         258 KHQSAVTCLQF--NKNFVITSSDDGTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEETKLLV  335 (342)
T ss_dssp             SCSSCEEEEEE--CSSEEEEEETTSEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEECSSEEEEEEECSSSSSCCEEEE
T ss_pred             eeeeceeeccc--CCCeeEEEcCCCEEEEEECCCCCEEEEEecccCCCCCCCEEEEEECCCCCEEEEEeCCCCCeeEEEE
Confidence             3445666555  55799999999999999999998777653      4567999999999999999998874    999


Q ss_pred             EeCCC
Q psy10953        155 YSYKP  159 (181)
Q Consensus       155 ~~~~~  159 (181)
                      ||++.
T Consensus       336 ~Df~~  340 (342)
T d2ovrb2         336 LDFDV  340 (342)
T ss_dssp             EECCC
T ss_pred             EeCCC
Confidence            99864

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.89  E-value=1.9e-21  Score=142.15  Aligned_cols=141  Identities=18%  Similarity=0.272  Sum_probs=114.8

Q ss_pred             EEEEcCCCCEEEEEeCCC-cEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCCC---------
Q psy10953         16 NVVFSPDDKYVLSGSQSG-KINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDANT---------   84 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~-~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~---------   84 (181)
                      ..+++|+++.+++++.++ .+++|++...+....+.. +...+.+++|+|++++|++++.|+.+++||+..         
T Consensus       123 ~~~~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~  202 (287)
T d1pgua2         123 GSAVSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWA  202 (287)
T ss_dssp             EEEEEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSC
T ss_pred             eeeeeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeeccccccccccc
Confidence            356788899988887765 799999976665544432 445577899999999999999999999999863         


Q ss_pred             CCcccEEEEEEcCC----------CCEEEEEeCCCcEEEEecCCCc-eeeee-ecCCcEEEEEEccCCCEEEEEcCCCcE
Q psy10953         85 GHSSWVLSTAFTRD----------GKFFISASADHTVRVWNFARRE-NMHTF-KHADQVWCVCVAPDGDKFVSVGEDKAV  152 (181)
Q Consensus        85 ~~~~~v~~~~~s~~----------~~~l~~~~~d~~i~v~d~~~~~-~~~~~-~~~~~v~~~~~sp~g~~l~~~~~d~~v  152 (181)
                      +|...|.+++|+|.          ++++++++.|++|++||+.... .+... .|...|++++|+|++ .|++++.|+.|
T Consensus       203 ~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~h~~~V~~v~~~~~~-~l~s~g~D~~v  281 (287)
T d1pgua2         203 FRTSKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPS-TLVSSGADACI  281 (287)
T ss_dssp             CCSSCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTSSTTCEEEEEEEETT-EEEEEETTSCE
T ss_pred             ccccccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCCCCCCeEEEEECCCC-EEEEEECCCeE
Confidence            46778999999875          4689999999999999997744 34433 388899999999986 58889999999


Q ss_pred             EEEeC
Q psy10953        153 HMYSY  157 (181)
Q Consensus       153 ~i~~~  157 (181)
                      ++|++
T Consensus       282 ~iW~i  286 (287)
T d1pgua2         282 KRWNV  286 (287)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99986

>d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=2.3e-20  Score=137.57  Aligned_cols=161  Identities=19%  Similarity=0.268  Sum_probs=126.5

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeC
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDA   82 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~   82 (181)
                      +...++.+...|.. +++++|++|++|+.|++|++||+.+++.+..+..|...+.+++|+|+  +|++++.|+.+++|+.
T Consensus         8 ~~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~~V~~v~~~~~--~l~s~s~D~~~~~~~~   84 (342)
T d2ovrb2           8 SPKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDN--IIISGSTDRTLKVWNA   84 (342)
T ss_dssp             CCEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCEEEECCCCSSCEEEEEEETT--EEEEEETTSCEEEEET
T ss_pred             cCEEECCcCCceEE-EEEECCCEEEEEeCCCeEEEEECCCCCEEEEEeCCCCCEEEEEeCCC--ccccceeccccccccc
Confidence            44557778877755 46778999999999999999999999999988888888889999874  8999999999999985


Q ss_pred             CCC----------------------------------------C---------------------------cc-------
Q psy10953         83 NTG----------------------------------------H---------------------------SS-------   88 (181)
Q Consensus        83 ~~~----------------------------------------~---------------------------~~-------   88 (181)
                      ...                                        .                           ..       
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~  164 (342)
T d2ovrb2          85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDP  164 (342)
T ss_dssp             TTTEEEEEECCCSSCEEEEEEETTEEEEEETTSEEEEEESSSCCEEEEEECCSSCEEEEEECSSCEEEEETTSCEEEEEG
T ss_pred             ccccceecccccceeEeeeecccccccccccceeEEEeecccccceeeeecccccceeeccccceeeeecCCCeEEEeec
Confidence            310                                        0                           00       


Q ss_pred             ------------cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         89 ------------WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        89 ------------~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                                  ......++++++++++++.|+.|++||+..++.+..+. |...+.++++  +++++++++.|+.|++|
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~l~s~~~dg~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~s~s~d~~i~iw  242 (342)
T d2ovrb2         165 ETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMEL--KDNILVSGNADSTVKIW  242 (342)
T ss_dssp             GGTEEEEEECCCSSCEEEEEECSSEEEEEETTSCEEEEETTTCCEEEEECCCCSCEEEEEE--ETTEEEEEETTSCEEEE
T ss_pred             ccceeeEEEcCcccccccccCCCCEEEEEeCCCeEEEeecccceeeeEecccccceeEEec--CCCEEEEEcCCCEEEEE
Confidence                        00123455678899999999999999999988877765 6666776655  56799999999999999


Q ss_pred             eCCCCeeEEEcCC
Q psy10953        156 SYKPEEEVEVNGG  168 (181)
Q Consensus       156 ~~~~~~~~~~~~~  168 (181)
                      ++...+.......
T Consensus       243 d~~~~~~~~~~~~  255 (342)
T d2ovrb2         243 DIKTGQCLQTLQG  255 (342)
T ss_dssp             ETTTCCEEEEECS
T ss_pred             ecccccccccccc
Confidence            9988766554433

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.88  E-value=2.1e-20  Score=138.48  Aligned_cols=163  Identities=16%  Similarity=0.335  Sum_probs=123.4

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      ...+..+...+.. +++++|++|++|+.|++|++||+.+++.+..+..|...+.+++|+|+ .+|++++.|+.+++|+..
T Consensus         5 ~~tL~GH~~~vit-c~~~~~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~l~~s~~-~~l~s~s~D~~i~iw~~~   82 (355)
T d1nexb2           5 RTTLRGHMTSVIT-CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYAHG-GILVSGSTDRTVRVWDIK   82 (355)
T ss_dssp             EEEEECCSSSCEE-EEEEETTEEEEEETTTEEEEEETTTTEEEEEEECCSSCEEEEEEETT-TEEEEEETTCCEEEEETT
T ss_pred             cEEECCcCCCcEE-EEEECCCEEEEEeCCCeEEEEECCCCcEEEEEECCCCCEEEEEEcCC-CEEEEEeccccccccccc
Confidence            4557777777633 24557899999999999999999999999999988888999999986 579999999999999986


Q ss_pred             CC----------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCC-----------------------------------
Q psy10953         84 TG----------HSSWVLSTAFTRDGKFFISASADHTVRVWNFAR-----------------------------------  118 (181)
Q Consensus        84 ~~----------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~-----------------------------------  118 (181)
                      ..          +........++++++++++++.|+.|++||+..                                   
T Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (355)
T d1nexb2          83 KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMA  162 (355)
T ss_dssp             TTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECCC-----------CCCEEESCTTTCTTEEEEEECCSS
T ss_pred             ccccccccccccccccccccccccccceeeeecCCCcEEEEEccCCceeccccccceeccceeccccccceeeeeeeccc
Confidence            42          112234445666667777777777777776542                                   


Q ss_pred             ----------------------------Cceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        119 ----------------------------RENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       119 ----------------------------~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                                                  ++.+.... +...+.++.++|+++.+++++.|+.|++|+..++..+....+
T Consensus       163 ~v~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~  241 (355)
T d1nexb2         163 SVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQG  241 (355)
T ss_dssp             CEEEEEEETTEEEEEETTSCEEEEETTTTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             cccccccccceeeeecccceeeeeecccccceeeeeccccccccccccccceeeecccccceEEeeecccccccccccc
Confidence                                        22222222 334567889999999999999999999999998887766554

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.88  E-value=2.1e-21  Score=145.15  Aligned_cols=151  Identities=14%  Similarity=0.143  Sum_probs=124.0

Q ss_pred             EEEEEcC-CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC--cEEEEeCCCC------
Q psy10953         15 WNVVFSP-DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG--IINIFDANTG------   85 (181)
Q Consensus        15 ~~~~~s~-~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~--~v~i~d~~~~------   85 (181)
                      +.-.||| ||+++|+++ ++.|++||+.+++..+.  .|+..+.+++|+|||++|++++.+.  .+++||..++      
T Consensus         6 ~~~~fSP~dG~~~a~~~-~g~v~v~d~~~~~~~~~--~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~   82 (360)
T d1k32a3           6 FAEDFSPLDGDLIAFVS-RGQAFIQDVSGTYVLKV--PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE   82 (360)
T ss_dssp             GEEEEEECGGGCEEEEE-TTEEEEECTTSSBEEEC--SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC
T ss_pred             hcccccCCCCCEEEEEE-CCeEEEEECCCCcEEEc--cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee
Confidence            3456999 999999886 57999999998887764  4566678999999999998766553  7999998754      


Q ss_pred             -CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEc----------CCCcEE
Q psy10953         86 -HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVG----------EDKAVH  153 (181)
Q Consensus        86 -~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~----------~d~~v~  153 (181)
                       |...+..++|+|+|++|++++.++.+++|++.+++...... +...+.+++|+|+|++|+.++          .++.++
T Consensus        83 ~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~  162 (360)
T d1k32a3          83 ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIH  162 (360)
T ss_dssp             CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEE
T ss_pred             CCCceEEeeeecccccccceeccccccccccccccceeeeeecccccccchhhccceeeeeeeccccccceeecccccee
Confidence             56779999999999999999999999999999888776665 566788999999999998654          334689


Q ss_pred             EEeCCCCeeEEEcCC
Q psy10953        154 MYSYKPEEEVEVNGG  168 (181)
Q Consensus       154 i~~~~~~~~~~~~~~  168 (181)
                      +|+...++...+..+
T Consensus       163 v~d~~~~~~~~~~~~  177 (360)
T d1k32a3         163 VYDMEGRKIFAATTE  177 (360)
T ss_dssp             EEETTTTEEEECSCS
T ss_pred             eeccccCceeeeccc
Confidence            999988776655444

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=1e-19  Score=131.34  Aligned_cols=157  Identities=25%  Similarity=0.402  Sum_probs=119.1

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      |.-...+...|+++  ++||++|++|+.|++|++||+.+++.+..+..|...+.+++|  ++++|++++.|+.+++|++.
T Consensus         8 i~~~~~~~~~V~c~--~~d~~~l~sgs~Dg~i~vWd~~~~~~~~~l~~H~~~V~~v~~--~~~~l~s~s~D~~i~~~~~~   83 (293)
T d1p22a2           8 IHCRSETSKGVYCL--QYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCLQY--DERVIITGSSDSTVRVWDVN   83 (293)
T ss_dssp             EECCCSSCCCEEEE--ECCSSEEEEEESSSCEEEEESSSCCEEEEECCCSSCEEEEEC--CSSEEEEEETTSCEEEEESS
T ss_pred             EeccCCCCCCEEEE--EEcCCEEEEEeCCCeEEEEECCCCcEEEEEecCCCCEeeeec--ccceeecccccccccccccc
Confidence            33333455567765  568999999999999999999999999999888888877765  67899999999999999975


Q ss_pred             CC---------------------------------------------------CcccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         84 TG---------------------------------------------------HSSWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        84 ~~---------------------------------------------------~~~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                      .+                                                   |...+...  .+....+++++.|+.++
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~s~d~~i~  161 (293)
T d1p22a2          84 TGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNVV--DFDDKYIVSASGDRTIK  161 (293)
T ss_dssp             SCCEEEEECCCCSCEEEEECCTTEEEEEETTSCEEEEECSSSSCCEEEEEECCCSSCEEEE--EEETTEEEEEETTSEEE
T ss_pred             cccccccccccccccccccccccceeecccccceeEeeccccccccccccccccccccccc--eecccccccccCCCcee
Confidence            32                                                   11112222  23345677888899999


Q ss_pred             EEecCCCceeeeee-cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        113 VWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       113 v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +||..+++.+..+. +...+..+.+  ++..+++++.|+.|++|++.+...+....+
T Consensus       162 ~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~  216 (293)
T d1p22a2         162 VWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEG  216 (293)
T ss_dssp             EEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEEEECC
T ss_pred             eecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeeeeecc
Confidence            99998888777765 4555665554  567899999999999999988877665544

>d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Actin interacting protein 1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.87  E-value=6.9e-21  Score=139.09  Aligned_cols=108  Identities=13%  Similarity=0.198  Sum_probs=81.2

Q ss_pred             ECCCCCEEEEeeCC-CcEEEEeCC---------CCCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecC
Q psy10953         61 YSTDGHWIASGALD-GIINIFDAN---------TGHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHA  128 (181)
Q Consensus        61 ~s~d~~~l~~~~~d-~~v~i~d~~---------~~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~  128 (181)
                      +++++..+++++.+ +.+++|++.         ..+...+.+++|+|++++|++++.|+.|++||+.++......  .|.
T Consensus       126 ~~~~~~~~~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~~~~~~~~h~  205 (287)
T d1pgua2         126 VSLSQNYVAVGLEEGNTIQVFKLSDLEVSFDLKTPLRAKPSYISISPSETYIAAGDVMGKILLYDLQSREVKTSRWAFRT  205 (287)
T ss_dssp             EEECSSEEEEEETTTSCEEEEETTEEEEEEECSSCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEEEECCSCCCS
T ss_pred             eeccCcceeeeccccceeeeeeccccceeeeeeeccCCceeEEEeccCccccccccccccccceeecccccccccccccc
Confidence            34445555555544 356777653         234567899999999999999999999999999988755432  377


Q ss_pred             CcEEEEEEccC----------CCEEEEEcCCCcEEEEeCCC-CeeEEEcCC
Q psy10953        129 DQVWCVCVAPD----------GDKFVSVGEDKAVHMYSYKP-EEEVEVNGG  168 (181)
Q Consensus       129 ~~v~~~~~sp~----------g~~l~~~~~d~~v~i~~~~~-~~~~~~~~~  168 (181)
                      ..|.+++|+|+          ++++++++.|+.|++|++.. +..+....+
T Consensus       206 ~~v~~~~~~p~~~~~~~~~~~~~~l~sgs~D~~i~iw~~~~~~~~~~~~~~  256 (287)
T d1pgua2         206 SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNA  256 (287)
T ss_dssp             SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSCTTCCEEETTS
T ss_pred             cccceeeecccccccccccCCCCeeEeecCCCeEEEEECCCCCeEEEEeCC
Confidence            88999999875          46899999999999999866 445555544

>d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Tricorn protease domain 2
family: Tricorn protease domain 2
domain: Tricorn protease domain 2
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=99.86  E-value=1.2e-20  Score=140.85  Aligned_cols=151  Identities=12%  Similarity=0.133  Sum_probs=125.0

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGSQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-   85 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-   85 (181)
                      .+...+.+++|||||++|++++.+.  .|++||.++++..... .+...+.+++|+|||++|++++.++.+.+|++.++ 
T Consensus        40 ~~~~~v~~~~~spDg~~l~~~~~~~g~~v~v~d~~~~~~~~~~-~~~~~v~~~~~spdg~~l~~~~~~~~~~~~~~~~~~  118 (360)
T d1k32a3          40 PEPLRIRYVRRGGDTKVAFIHGTREGDFLGIYDYRTGKAEKFE-ENLGNVFAMGVDRNGKFAVVANDRFEIMTVDLETGK  118 (360)
T ss_dssp             SCCSCEEEEEECSSSEEEEEEEETTEEEEEEEETTTCCEEECC-CCCCSEEEEEECTTSSEEEEEETTSEEEEEETTTCC
T ss_pred             cCCCCEEEEEECCCCCEEEEEEcCCCCEEEEEECCCCcEEEee-CCCceEEeeeecccccccceeccccccccccccccc
Confidence            4566789999999999998776554  7999999988876554 45555678999999999999999999999999764 


Q ss_pred             -------CcccEEEEEEcCCCCEEEEEe----------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC
Q psy10953         86 -------HSSWVLSTAFTRDGKFFISAS----------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE  148 (181)
Q Consensus        86 -------~~~~v~~~~~s~~~~~l~~~~----------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~  148 (181)
                             +...+.+++|+|+|++|+.+.          .++.+++||..+++......+...+..++++|+|++|++++.
T Consensus       119 ~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~~~~~~~~~spdg~~l~~~s~  198 (360)
T d1k32a3         119 PTVIERSREAMITDFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAATTENSHDYAPAFDADSKNLYYLSY  198 (360)
T ss_dssp             EEEEEECSSSCCCCEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEECSCSSSBEEEEEECTTSCEEEEEES
T ss_pred             eeeeeecccccccchhhccceeeeeeeccccccceeeccccceeeeccccCceeeecccccccccccccCCCCEEEEEeC
Confidence                   344567799999999988654          345699999998877666667778899999999999999999


Q ss_pred             CCcEEEEeCCCC
Q psy10953        149 DKAVHMYSYKPE  160 (181)
Q Consensus       149 d~~v~i~~~~~~  160 (181)
                      ++.+.+|+....
T Consensus       199 ~~~~~~~d~~~~  210 (360)
T d1k32a3         199 RSLDPSPDRVVL  210 (360)
T ss_dssp             CCCCCEECSSSS
T ss_pred             CCceEccccccc
Confidence            999999987543

>d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: Cdc4 propeller domain
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.86  E-value=6.2e-21  Score=141.38  Aligned_cols=150  Identities=20%  Similarity=0.327  Sum_probs=120.2

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +...........++.|+|+++++++++.|++|++||+++++....+..|...+.++.++  +++|++++.|+.|++||+.
T Consensus       194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~~~~~~~h~~~v~~~~~~--~~~l~~~~~dg~i~iwd~~  271 (355)
T d1nexb2         194 LYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLLRLS--DKFLVSAAADGSIRGWDAN  271 (355)
T ss_dssp             EEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCEEEEECCCSSCCCEEEEC--SSEEEEECTTSEEEEEETT
T ss_pred             eeeeeccccccccccccccceeeecccccceEEeeeccccccccccccccccccccccc--cceeeeeeccccccccccc
Confidence            33444556667889999999999999999999999999999998888887777788886  5789999999999999997


Q ss_pred             CCC------cccEEE-EEEcCCCCEEEEEeCCCcEEEEecCCCceeeee--ecCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         84 TGH------SSWVLS-TAFTRDGKFFISASADHTVRVWNFARRENMHTF--KHADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        84 ~~~------~~~v~~-~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~--~~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                      +..      ...+.. ..++++++++++++ |+.|++||+++++.+...  .|.+.|++++|+|+ ..+++++.||.++|
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~-d~~i~vwd~~tg~~~~~~~~~~~~~V~~v~~~~~-~~~~~~s~dg~~~l  349 (355)
T d1nexb2         272 DYSRKFSYHHTNLSAITTFYVSDNILVSGS-ENQFNIYNLRSGKLVHANILKDADQIWSVNFKGK-TLVAAVEKDGQSFL  349 (355)
T ss_dssp             TCCEEEEEECTTCCCCCEEEECSSEEEEEE-TTEEEEEETTTCCBCCSCTTTTCSEEEEEEEETT-EEEEEEESSSCEEE
T ss_pred             ccceecccccCCceEEEEEcCCCCEEEEEe-CCEEEEEECCCCCEEEEEecCCCCCEEEEEEcCC-eEEEEEECCCcEEE
Confidence            642      223333 35677888777665 889999999998877543  47788999999987 47788889998776


Q ss_pred             EeC
Q psy10953        155 YSY  157 (181)
Q Consensus       155 ~~~  157 (181)
                      |-+
T Consensus       350 ~~~  352 (355)
T d1nexb2         350 EIL  352 (355)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            643

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.85  E-value=2.7e-20  Score=143.88  Aligned_cols=79  Identities=11%  Similarity=0.156  Sum_probs=58.0

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEe--c---CCceEEEEEECCCCCEEEE-eeCCCc
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFD--T---RGKFTLSIAYSTDGHWIAS-GALDGI   76 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~--~---~~~~~~~~~~s~d~~~l~~-~~~d~~   76 (181)
                      .+..+..+. .+..++|||||+++++++.|+++++||+.+++......  .   +...+.++.|+|||+++++ +..++.
T Consensus        54 ~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~~~~~~~~~s~~~spDG~~l~v~~~~~~~  132 (426)
T d1hzua2          54 IVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIGIEARSVESSKFKGYEDRYTIAGAYWPPQ  132 (426)
T ss_dssp             EEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEESSE
T ss_pred             EEEEEeCCC-CeeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCCCCCcceEEeeeecCCCCEEEEeecCCCe
Confidence            455666654 47899999999999999999999999999887544322  1   2223345677889998755 456788


Q ss_pred             EEEEeC
Q psy10953         77 INIFDA   82 (181)
Q Consensus        77 v~i~d~   82 (181)
                      +.+||.
T Consensus       133 v~i~d~  138 (426)
T d1hzua2         133 FAIMDG  138 (426)
T ss_dssp             EEEEET
T ss_pred             EEEEcC
Confidence            888873

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.81  E-value=3e-18  Score=132.99  Aligned_cols=165  Identities=10%  Similarity=0.101  Sum_probs=124.0

Q ss_pred             ceeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEE--EEEec---CCceEEEEEECCCCCEE-EEeeCCCc
Q psy10953          3 QISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLE--QIFDT---RGKFTLSIAYSTDGHWI-ASGALDGI   76 (181)
Q Consensus         3 ~~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~--~~~~~---~~~~~~~~~~s~d~~~l-~~~~~d~~   76 (181)
                      .+..+..+. .+..++|||||+++++++.|+++++||+.+++..  ..+..   +...+.+..|+|||++| +++..++.
T Consensus        54 v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~  132 (432)
T d1qksa2          54 IKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQ  132 (432)
T ss_dssp             EEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTE
T ss_pred             EEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCCeEEecccCCCCCEEEEEcCCCCe
Confidence            456666664 4789999999999999999999999999887643  22322   22233445678899986 56788999


Q ss_pred             EEEEeCCCCC-------------------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCcee--eeeecCCcEEEE
Q psy10953         77 INIFDANTGH-------------------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRENM--HTFKHADQVWCV  134 (181)
Q Consensus        77 v~i~d~~~~~-------------------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~--~~~~~~~~v~~~  134 (181)
                      +.+||..++.                   .....++.++|+|..+ ++...++.|.+||..+.+..  ..+.....+.++
T Consensus       133 v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~  212 (432)
T d1qksa2         133 YVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDG  212 (432)
T ss_dssp             EEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEE
T ss_pred             EEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEEEEccCCCcceEEEEcccCccccc
Confidence            9999987542                   2345678899999854 56667899999999876643  445566678999


Q ss_pred             EEccCCCEEEEEcC-CCcEEEEeCCCCeeEEEcCC
Q psy10953        135 CVAPDGDKFVSVGE-DKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       135 ~~sp~g~~l~~~~~-d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +|+|+|+++++++. ++.+.+++...++.+.....
T Consensus       213 ~~spdg~~~~va~~~~~~v~v~d~~~~~~~~~~~~  247 (432)
T d1qksa2         213 GLDGSHRYFITAANARNKLVVIDTKEGKLVAIEDT  247 (432)
T ss_dssp             EECTTSCEEEEEEGGGTEEEEEETTTTEEEEEEEC
T ss_pred             eECCCCCEEEEeccccceEEEeecccceEEEEecc
Confidence            99999998877775 56899999988877654433

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.80  E-value=4.4e-17  Score=118.57  Aligned_cols=154  Identities=16%  Similarity=0.179  Sum_probs=110.3

Q ss_pred             eEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEE-eeCCCcEEEEeCC-------
Q psy10953         13 DMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIAS-GALDGIINIFDAN-------   83 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~-~~~d~~v~i~d~~-------   83 (181)
                      .+..++|+|||++|+ +++.+++|++||+.+++.+..+..+.. ...+.++++++.++. +..++.+.+|+..       
T Consensus        33 ~p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  111 (301)
T d1l0qa2          33 NPMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSS-PQGVAVSPDGKQVYVTNMASSTLSVIDTTSNTVAGT  111 (301)
T ss_dssp             SEEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEE
T ss_pred             CceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeecccc-ccccccccccccccccccccceeeecccccceeeee
Confidence            357899999999875 667889999999999988776655433 235566666654433 3344445555432       


Q ss_pred             -----------------------------------CC-------------------------------------------
Q psy10953         84 -----------------------------------TG-------------------------------------------   85 (181)
Q Consensus        84 -----------------------------------~~-------------------------------------------   85 (181)
                                                         +.                                           
T Consensus       112 ~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  191 (301)
T d1l0qa2         112 VKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTVSVGRSPKGIAVTPDGTKVYVANFDSMSISVIDTVTNS  191 (301)
T ss_dssp             EECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTE
T ss_pred             ccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeecccCCCceEEEeeccccceeeeccccccccccccccee
Confidence                                               10                                           


Q ss_pred             ------CcccEEEEEEcCCCCEEEEEeC---CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE-EEEcCCCcEEEE
Q psy10953         86 ------HSSWVLSTAFTRDGKFFISASA---DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF-VSVGEDKAVHMY  155 (181)
Q Consensus        86 ------~~~~v~~~~~s~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l-~~~~~d~~v~i~  155 (181)
                            ....+..++++++++.++.++.   ++.|++||+.+++.+..+.....+++++|+|||+++ ++++.++.|++|
T Consensus       192 ~~~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~va~spdg~~l~va~~~~~~i~v~  271 (301)
T d1l0qa2         192 VIDTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVGPDPAGIAVTPDGKKVYVALSFCNTVSVI  271 (301)
T ss_dssp             EEEEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECCSSEEEEEECTTSSEEEEEETTTTEEEEE
T ss_pred             eeecccccCCcceeeccccccccccccccceeeeeeeeecCCCeEEEEEcCCCCEEEEEEeCCCCEEEEEECCCCeEEEE
Confidence                  0012345678888886655443   357999999999888888877789999999999986 567788999999


Q ss_pred             eCCCCeeEEEcC
Q psy10953        156 SYKPEEEVEVNG  167 (181)
Q Consensus       156 ~~~~~~~~~~~~  167 (181)
                      |..+++.+....
T Consensus       272 D~~t~~~~~~~~  283 (301)
T d1l0qa2         272 DTATNTITATMA  283 (301)
T ss_dssp             ETTTTEEEEEEE
T ss_pred             ECCCCeEEEEEe
Confidence            999998776443

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.77  E-value=1.4e-17  Score=122.86  Aligned_cols=71  Identities=15%  Similarity=0.181  Sum_probs=60.7

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEE
Q psy10953         92 STAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus        92 ~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      .++++|++.+++.+  ++.+++||+.+++.+..+.+...+.+++|+|||+++++++.++.|++||..+.+.+.
T Consensus       245 ~~~~~~~~~~~~~~--~~~i~v~d~~~~~~~~~~~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D~~t~~~v~  315 (337)
T d1pbyb_         245 STAVNPAKTRAFGA--YNVLESFDLEKNASIKRVPLPHSYYSVNVSTDGSTVWLGGALGDLAAYDAETLEKKG  315 (337)
T ss_dssp             EEEECTTSSEEEEE--ESEEEEEETTTTEEEEEEECSSCCCEEEECTTSCEEEEESBSSEEEEEETTTCCEEE
T ss_pred             EEEecccceEEEEc--cccEEEEECCCCcEEEEEcCCCCEEEEEECCCCCEEEEEeCCCcEEEEECCCCcEEE
Confidence            34567777766554  478999999999988888888889999999999999999999999999999988775

>d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: Cell cycle arrest protein BUB3
domain: Cell cycle arrest protein BUB3
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.76  E-value=1.7e-17  Score=121.61  Aligned_cols=144  Identities=13%  Similarity=0.164  Sum_probs=113.5

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEE---ecCCceEEEE-EECCCCCEEEEeeCCCcEEEEeCCC------
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIF---DTRGKFTLSI-AYSTDGHWIASGALDGIINIFDANT------   84 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~---~~~~~~~~~~-~~s~d~~~l~~~~~d~~v~i~d~~~------   84 (181)
                      ....+.+++..+++++.|+.|++||+...+.....   ........+. .+..++..+++++.||.+.+|+...      
T Consensus       152 ~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~  231 (342)
T d1yfqa_         152 KIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYN  231 (342)
T ss_dssp             CEEEEEECSSEEEEEESTTEEEEEESSCCTTCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTT
T ss_pred             eeeeeeccCCceeeecCCCcEEEEecccCcccceeeeecccccceeeeEeecCCCCEEEeecCCCeEEEEEecCCcceee
Confidence            45567889999999999999999999866543221   1122223344 4455678899999999999998642      


Q ss_pred             -----------------CCcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEc
Q psy10953         85 -----------------GHSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        85 -----------------~~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                                       .|...+.+++|+|++++|++|+.||.|++||+.+++.+.++.+......++|+|+|+.+++++
T Consensus       232 ~~~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~~~~~~~s~~~~~l~~a~  311 (342)
T d1yfqa_         232 SSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNEDSVVKIACSDNILCLAT  311 (342)
T ss_dssp             CTTCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTEEEEECCCCSSSEEEEEEECSSEEEEEE
T ss_pred             ccccceeeeeeeccCCCcccccceeEEecCCccEEEEECCCCEEEEEECCCCcEEEEecCCCCCEEEEEEeCCCEEEEEE
Confidence                             234468899999999999999999999999999999888887555667789999999999999


Q ss_pred             CCCcEEEEeCC
Q psy10953        148 EDKAVHMYSYK  158 (181)
Q Consensus       148 ~d~~v~i~~~~  158 (181)
                      .|..+++|...
T Consensus       312 sdd~~~~~~~~  322 (342)
T d1yfqa_         312 SDDTFKTNAAI  322 (342)
T ss_dssp             ECTHHHHCSSS
T ss_pred             cCCcEEEeeee
Confidence            89888887763

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.76  E-value=4e-17  Score=120.73  Aligned_cols=67  Identities=9%  Similarity=0.025  Sum_probs=56.2

Q ss_pred             EEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEEE-EeeCCCcEEEEeCC
Q psy10953         17 VVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWIA-SGALDGIINIFDAN   83 (181)
Q Consensus        17 ~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~   83 (181)
                      ++|+++++++++++.|++|.+||+.+++++..+.. ++....+++|+|||++++ ++..++.|.+||+.
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~   70 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLD   70 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETT
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCc
Confidence            47899999999999999999999999999887764 333345899999999875 55678999999865

>d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: WD40 repeat-like
family: WD40-repeat
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=8.4e-17  Score=115.74  Aligned_cols=139  Identities=23%  Similarity=0.411  Sum_probs=107.9

Q ss_pred             CeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC----
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG----   85 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~----   85 (181)
                      +...+..+.+  ....+++++.|+.+++||+++++....+..+...+..+.+  ++..+++++.|+.+++||+++.    
T Consensus       137 ~~~~v~~~~~--~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~~v~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~~  212 (293)
T d1p22a2         137 HRAAVNVVDF--DDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLR  212 (293)
T ss_dssp             CSSCEEEEEE--ETTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEEEE--ETTEEEEEETTSCEEEEETTTCCEEE
T ss_pred             ccccccccee--cccccccccCCCceeeecCCCCcEEEEEcccccccccccC--CCCeEEEecCCCEEEEEecccceeee
Confidence            3444444444  4567889999999999999999998888777666655555  4678999999999999999754    


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCC---------ceeeeee-cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASADHTVRVWNFARR---------ENMHTFK-HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~---------~~~~~~~-~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                          +...+.  .+++++++|++++.|+.|++||+...         ..+..+. |.+.|++++|  ++++|+++|.|+.
T Consensus       213 ~~~~~~~~v~--~~~~~~~~l~sg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~H~~~V~~v~~--d~~~l~s~s~Dg~  288 (293)
T d1p22a2         213 VLEGHEELVR--CIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF--DEFQIVSSSHDDT  288 (293)
T ss_dssp             EECCCSSCEE--EEECCSSEEEEEETTSCEEEEEHHHHTSTTSCTTTTEEEEECCCSSCCCCEEE--CSSCEEECCSSSE
T ss_pred             eecccceeee--eccccceEEEEEcCCCEEEEEECCCCccccccCCceeeEEecCCCCCEEEEEE--cCCEEEEEecCCE
Confidence                334443  45778899999999999999997532         2344443 7888999888  4678999999999


Q ss_pred             EEEEe
Q psy10953        152 VHMYS  156 (181)
Q Consensus       152 v~i~~  156 (181)
                      |++||
T Consensus       289 i~iWD  293 (293)
T d1p22a2         289 ILIWD  293 (293)
T ss_dssp             EEEEC
T ss_pred             EEEeC
Confidence            99997

>d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.75  E-value=5.5e-17  Score=125.76  Aligned_cols=140  Identities=16%  Similarity=0.146  Sum_probs=110.5

Q ss_pred             CCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCc-------------c
Q psy10953         22 DDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHS-------------S   88 (181)
Q Consensus        22 ~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~-------------~   88 (181)
                      +.-++++.+.|++|.+||.++++++..+..+. .+..++|||||+++++++.|+.+++||+.++..             .
T Consensus        31 ~~~~~v~~~d~g~v~v~D~~t~~v~~~~~~g~-~~~~v~fSpDG~~l~~~s~dg~v~~~d~~t~~~~~~~~i~~~~~~~~  109 (432)
T d1qksa2          31 ENLFSVTLRDAGQIALIDGSTYEIKTVLDTGY-AVHISRLSASGRYLFVIGRDGKVNMIDLWMKEPTTVAEIKIGSEARS  109 (432)
T ss_dssp             GGEEEEEETTTTEEEEEETTTCCEEEEEECSS-CEEEEEECTTSCEEEEEETTSEEEEEETTSSSCCEEEEEECCSEEEE
T ss_pred             CcEEEEEEcCCCEEEEEECCCCcEEEEEeCCC-CeeEEEECCCCCEEEEEcCCCCEEEEEeeCCCceEEEEEecCCCCCC
Confidence            33345899999999999999999999987654 467899999999999999999999999876432             2


Q ss_pred             cEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeee------------cCCcEEEEEEccCCCEE-EEEcCCCcEEE
Q psy10953         89 WVLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFK------------HADQVWCVCVAPDGDKF-VSVGEDKAVHM  154 (181)
Q Consensus        89 ~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~------------~~~~v~~~~~sp~g~~l-~~~~~d~~v~i  154 (181)
                      .+.+.+|+|||++| +++..++.+++||..+++.+..+.            +......+.++|+|..+ ++...++.|.+
T Consensus       110 ~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~  189 (432)
T d1qksa2         110 IETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNVKETGKILL  189 (432)
T ss_dssp             EEECCSTTCTTTEEEEEEEETTEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEETTTTEEEE
T ss_pred             eEEecccCCCCCEEEEEcCCCCeEEEEeCccccceeeeccCCccccceeccCCCceeEEEECCCCCEEEEEEccCCeEEE
Confidence            23344678899975 778889999999999887665442            23456678999999876 55566789999


Q ss_pred             EeCCCCee
Q psy10953        155 YSYKPEEE  162 (181)
Q Consensus       155 ~~~~~~~~  162 (181)
                      |+....+.
T Consensus       190 ~d~~~~~~  197 (432)
T d1qksa2         190 VDYTDLNN  197 (432)
T ss_dssp             EETTCSSE
T ss_pred             EEccCCCc
Confidence            99876543

>d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.72  E-value=5.7e-16  Score=113.99  Aligned_cols=141  Identities=18%  Similarity=0.266  Sum_probs=113.9

Q ss_pred             CEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEECCCCCEE-EEeeCCCcEEEEeCCCCCc-------------
Q psy10953         24 KYVLSGSQSGKINLYGVETGKLEQIFDTR--GKFTLSIAYSTDGHWI-ASGALDGIINIFDANTGHS-------------   87 (181)
Q Consensus        24 ~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~d~~~l-~~~~~d~~v~i~d~~~~~~-------------   87 (181)
                      .++++++.|++|++||+++++.+..+..+  +..+..++|+|||+++ ++++.++.|.+||+.++..             
T Consensus         2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~spDg~~l~v~~~~~~~v~v~D~~t~~~~~~~~~~~~~~~~   81 (337)
T d1pbyb_           2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVAPGGRIAYATVNKSESLVKIDLVTGETLGRIDLSTPEERV   81 (337)
T ss_dssp             EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEECTTSSEEEEEETTTTEEEEEETTTCCEEEEEECCBTTEEE
T ss_pred             eEEEEEcCCCEEEEEECCCCeEEEEEECCCCCCCccEEEECCCCCEEEEEECCCCeEEEEECCCCcEEEEEecCCCcccc
Confidence            57899999999999999999998877643  3344579999999987 4567899999999987542             


Q ss_pred             ccEEEEEEcCCCCEEEEEe------------CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEE
Q psy10953         88 SWVLSTAFTRDGKFFISAS------------ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMY  155 (181)
Q Consensus        88 ~~v~~~~~s~~~~~l~~~~------------~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~  155 (181)
                      ..+..++|+|++++++++.            .+..+.+||..++.....+.....+.+++|+|+|+++++++.  .+.+|
T Consensus        82 ~~~~~v~~s~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~--~~~~~  159 (337)
T d1pbyb_          82 KSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQITMLAWARDGSKLYGLGR--DLHVM  159 (337)
T ss_dssp             ECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSCCCEEECTTSSCEEEESS--SEEEE
T ss_pred             cceeeEEEcCCCcEEEEeecCCcceeeeccccccceeeccccCCeEEEeccccCCceEEEEcCCCCEEEEEcC--Cccee
Confidence            1234678999999887765            356788999999988888887778889999999999998875  47789


Q ss_pred             eCCCCeeEEEc
Q psy10953        156 SYKPEEEVEVN  166 (181)
Q Consensus       156 ~~~~~~~~~~~  166 (181)
                      +..++......
T Consensus       160 d~~~~~~~~~~  170 (337)
T d1pbyb_         160 DPEAGTLVEDK  170 (337)
T ss_dssp             ETTTTEEEEEE
T ss_pred             eeecCcEEEEe
Confidence            99887766544

>d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: YVTN repeat
domain: Surface layer protein
species: Archaeon Methanosarcina mazei [TaxId: 2209]

Probab=99.68  E-value=1.5e-14  Score=104.94  Aligned_cols=139  Identities=21%  Similarity=0.272  Sum_probs=112.4

Q ss_pred             EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEE-EeeCCCcEEEEeCCCCC-------cccEEEEEEcCC
Q psy10953         27 LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIA-SGALDGIINIFDANTGH-------SSWVLSTAFTRD   98 (181)
Q Consensus        27 ~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~~~-------~~~v~~~~~s~~   98 (181)
                      ++++.|++|.+||+.+++.+..+..... ...++|+|||++|+ ++..++.|.+||+.++.       ...+..++|+++
T Consensus         6 V~~~~~~~v~v~D~~t~~~~~~i~~g~~-p~~va~spdG~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~~~~~~~~~~~   84 (301)
T d1l0qa2           6 IANSESDNISVIDVTSNKVTATIPVGSN-PMGAVISPDGTKVYVANAHSNDVSIIDTATNNVIATVPAGSSPQGVAVSPD   84 (301)
T ss_dssp             EEETTTTEEEEEETTTTEEEEEEECSSS-EEEEEECTTSSEEEEEEGGGTEEEEEETTTTEEEEEEECSSSEEEEEECTT
T ss_pred             EEECCCCEEEEEECCCCeEEEEEECCCC-ceEEEEeCCCCEEEEEECCCCEEEEEECCCCceeeeeeccccccccccccc
Confidence            4667899999999999999988876544 45899999999874 66788999999997652       234678899999


Q ss_pred             CCEEE-EEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEE-cCCCcEEEEeCCCCeeEEEc
Q psy10953         99 GKFFI-SASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSV-GEDKAVHMYSYKPEEEVEVN  166 (181)
Q Consensus        99 ~~~l~-~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~i~~~~~~~~~~~~  166 (181)
                      ++.++ ++..++.+.+|+..+++....+.+...+.+++++|+|+.++.. ..++.+.+|+..+...+...
T Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~  154 (301)
T d1l0qa2          85 GKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKSPLGLALSPDGKKLYVTNNGDKTVSVINTVTKAVINTV  154 (301)
T ss_dssp             SSEEEEEETTTTEEEEEETTTTEEEEEEECSSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEE
T ss_pred             cccccccccccceeeecccccceeeeeccccccceEEEeecCCCeeeeeeccccceeeeeccccceeeec
Confidence            98554 5556788999999999888888877888999999999987554 45788999999887666543

>d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.68  E-value=3.7e-16  Score=120.38  Aligned_cols=140  Identities=16%  Similarity=0.140  Sum_probs=103.2

Q ss_pred             EcCCCC--EEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC----------
Q psy10953         19 FSPDDK--YVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH----------   86 (181)
Q Consensus        19 ~s~~g~--~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~----------   86 (181)
                      ++.|.+  ++++.+.|++|++||+.+++.+..+..+.. +..++|||||+++++++.|+.+++||+.++.          
T Consensus        26 ~~~d~~~~~~V~~~~dg~v~vwD~~t~~~~~~l~~g~~-~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~~~~~~~i~~~  104 (426)
T d1hzua2          26 NDLDLPNLFSVTLRDAGQIALVDGDSKKIVKVIDTGYA-VHISRMSASGRYLLVIGRDARIDMIDLWAKEPTKVAEIKIG  104 (426)
T ss_dssp             SCCCGGGEEEEEETTTTEEEEEETTTCSEEEEEECCSS-EEEEEECTTSCEEEEEETTSEEEEEETTSSSCEEEEEEECC
T ss_pred             ccCCCCeEEEEEEcCCCEEEEEECCCCcEEEEEeCCCC-eeEEEECCCCCEEEEEeCCCCEEEEEccCCceeEEEEEeCC
Confidence            444433  457888999999999999999998886544 6789999999999999999999999997653          


Q ss_pred             ---cccEEEEEEcCCCCEEE-EEeCCCcEEEEecCCCceeeeee------------cCCcEEEEEEccCCCEEEEEcC-C
Q psy10953         87 ---SSWVLSTAFTRDGKFFI-SASADHTVRVWNFARRENMHTFK------------HADQVWCVCVAPDGDKFVSVGE-D  149 (181)
Q Consensus        87 ---~~~v~~~~~s~~~~~l~-~~~~d~~i~v~d~~~~~~~~~~~------------~~~~v~~~~~sp~g~~l~~~~~-d  149 (181)
                         ...+.+++|+|||++++ ++..++.+++||..++.......            +......+++++++..++.... .
T Consensus       105 ~~~~~~~~s~~~spDG~~l~v~~~~~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~d~~~~~~~~~~~  184 (426)
T d1hzua2         105 IEARSVESSKFKGYEDRYTIAGAYWPPQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVKET  184 (426)
T ss_dssp             SEEEEEEECCSTTCTTTEEEEEEEESSEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEETTT
T ss_pred             CCCcceEEeeeecCCCCEEEEeecCCCeEEEEcCCccceeEEeeccCCCccceeecCCCceeEEEECCCCCEEEEecCCC
Confidence               22344567788999764 45578999999999877654432            2234556777777777665544 3


Q ss_pred             CcEEEEeCCC
Q psy10953        150 KAVHMYSYKP  159 (181)
Q Consensus       150 ~~v~i~~~~~  159 (181)
                      +.+.+++...
T Consensus       185 ~~i~~~~~~~  194 (426)
T d1hzua2         185 GKVLLVNYKD  194 (426)
T ss_dssp             TEEEEEECSS
T ss_pred             CeEEEEEecc
Confidence            5566665544

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=2.2e-13  Score=100.00  Aligned_cols=72  Identities=18%  Similarity=0.308  Sum_probs=51.0

Q ss_pred             CeeeEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEEe---cCCceEEEEEECCCCCEEEEeeC-CCcEEEEe
Q psy10953         10 GPVDMWNVVFSPDDKYVLSG-SQSGKINLYGVETGKLEQIFD---TRGKFTLSIAYSTDGHWIASGAL-DGIINIFD   81 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~~~~~~~~~---~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~d   81 (181)
                      .+..+..++|||||++|+++ ..|+.|++|++........+.   ........++|+|||++|++++. ++.+.+|+
T Consensus        35 ~~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~  111 (333)
T d1ri6a_          35 VPGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTR  111 (333)
T ss_dssp             CSSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEE
T ss_pred             CCCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCceEEEEcCCCCEEeecccCCCceeeec
Confidence            44667899999999999654 458999999997654322211   12333447899999999888775 55677765

>d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Putative isomerase YbhE
family: Putative isomerase YbhE
domain: Putative isomerase YbhE
species: Escherichia coli [TaxId: 562]

Probab=99.58  E-value=3.6e-14  Score=104.33  Aligned_cols=134  Identities=11%  Similarity=0.185  Sum_probs=98.8

Q ss_pred             EEEEeCCCcEEEEeCCCCcE---EEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCC-----------cccE
Q psy10953         26 VLSGSQSGKINLYGVETGKL---EQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGH-----------SSWV   90 (181)
Q Consensus        26 l~~~~~d~~i~~~d~~~~~~---~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~-----------~~~v   90 (181)
                      +++++.|++|++|++.....   ++.+.. +..+..++|||||++|+++ ..|+.|.+|++....           ...+
T Consensus         7 ~v~~~~~~~I~v~~~~~~~~l~~~~~~~~-~~~v~~la~spDG~~L~v~~~~d~~i~~~~i~~~~~~~~~~~~~~~~~~p   85 (333)
T d1ri6a_           7 YIASPESQQIHVWNLNHEGALTLTQVVDV-PGQVQPMVVSPDKRYLYVGVRPEFRVLAYRIAPDDGALTFAAESALPGSL   85 (333)
T ss_dssp             EEEEGGGTEEEEEEECTTSCEEEEEEEEC-SSCCCCEEECTTSSEEEEEETTTTEEEEEEECTTTCCEEEEEEEECSSCC
T ss_pred             EEECCCCCcEEEEEEcCCCCeEEEEEEcC-CCCEeEEEEeCCCCEEEEEECCCCeEEEEEEeCCCCcEEEeeecccCCCc
Confidence            46778999999999875433   334443 3445689999999998655 458999999986431           1235


Q ss_pred             EEEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeee---ecCCcEEEEEEccCCCEEEEEcC-CCcEEEEeCCCC
Q psy10953         91 LSTAFTRDGKFFISASA-DHTVRVWNFARRENMHTF---KHADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYKPE  160 (181)
Q Consensus        91 ~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~---~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~~~  160 (181)
                      ..++|+|+|+++++++. ++.+.+|+..........   .+...+.++.++|+++++++++. +..+.+|+....
T Consensus        86 ~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~~~  160 (333)
T d1ri6a_          86 THISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANISPDNRTLWVPALKQDRICLFTVSDD  160 (333)
T ss_dssp             SEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             eEEEEcCCCCEEeecccCCCceeeeccccccceecccccCCCccceEEEeeecceeeeccccccceeeEEEeccC
Confidence            67899999999888875 678999987765443332   35566888999999999887775 567999987654

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.51  E-value=2.9e-13  Score=101.81  Aligned_cols=155  Identities=6%  Similarity=-0.022  Sum_probs=109.6

Q ss_pred             EEEEcCCCCEEEEEe----------CCCcEEEEeCCCCcEEEEEecCC-------ceEEEEEECCCCCEEEEee-CCCcE
Q psy10953         16 NVVFSPDDKYVLSGS----------QSGKINLYGVETGKLEQIFDTRG-------KFTLSIAYSTDGHWIASGA-LDGII   77 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~----------~d~~i~~~d~~~~~~~~~~~~~~-------~~~~~~~~s~d~~~l~~~~-~d~~v   77 (181)
                      .++|+|||+.+++++          .|++|++||..+++....+..+.       .....+.|+|||++++++. .++.+
T Consensus        69 ~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v  148 (368)
T d1mdah_          69 LAVAGHSGSDFALASTSFARSAKGKRTDYVEVFDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAA  148 (368)
T ss_dssp             EEEECTTSSCEEEEEEEETTTTSSSEEEEEEEECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCE
T ss_pred             cceECCCCCEEEEEcccCccccccccCCeEEEEECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeE
Confidence            588999999998754          36789999999999887665321       1122588999999988765 56889


Q ss_pred             EEEeCCCCC-----------------------------------------------------c-----------------
Q psy10953         78 NIFDANTGH-----------------------------------------------------S-----------------   87 (181)
Q Consensus        78 ~i~d~~~~~-----------------------------------------------------~-----------------   87 (181)
                      .+||+.++.                                                     .                 
T Consensus       149 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  228 (368)
T d1mdah_         149 AGLSVPGASDDQLTKSASCFHIHPGAAATHYLGSCPASLAASDLAAAPAAAGIVGAQCTGAQNCSSQAAQANYPGMLVWA  228 (368)
T ss_dssp             EEEEETTTEEEEEEECSSCCCCEEEETTEEECCCCTTSCEEEECCSSCCCCEECCCCSCTTSCBCSCCEEETTTTEEEEC
T ss_pred             EEEECCCCcEeEEeeccCcceEccCCCceEEEEcCCCCEEEEEecCCceeeeeeecccccccccceeecccccCcEEEEe
Confidence            999853100                                                     0                 


Q ss_pred             --cc---------------------------------EEEEEEcCCCCEEEEEeCC---------CcEEEEecCCCceee
Q psy10953         88 --SW---------------------------------VLSTAFTRDGKFFISASAD---------HTVRVWNFARRENMH  123 (181)
Q Consensus        88 --~~---------------------------------v~~~~~s~~~~~l~~~~~d---------~~i~v~d~~~~~~~~  123 (181)
                        ..                                 ...++++|++..++....+         ..+.+||..+++.+.
T Consensus       229 ~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~  308 (368)
T d1mdah_         229 VASSILQGDIPAAGATMKAAIDGNESGRKADNFRSAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSG  308 (368)
T ss_dssp             BSSCCEEEECCSSCCEEECCCCSSCTHHHHTTEEECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEE
T ss_pred             cCCCEEEEeecCCceEEEeecccccceeeeeeecCCCceeEEEcCCCCEEEEEecCCCceeecCCceEEEEECCCCcEeE
Confidence              00                                 0123556666544333221         248889998888887


Q ss_pred             eeecCCcEEEEEEccCCCE--EEEEcCCCcEEEEeCCCCeeEEEcCCCC
Q psy10953        124 TFKHADQVWCVCVAPDGDK--FVSVGEDKAVHMYSYKPEEEVEVNGGGG  170 (181)
Q Consensus       124 ~~~~~~~v~~~~~sp~g~~--l~~~~~d~~v~i~~~~~~~~~~~~~~~~  170 (181)
                      .+.....+..++|+|||+.  +++++.++.|++||..+++.+....-+.
T Consensus       309 ~~~~~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tgk~~~~i~~g~  357 (368)
T d1mdah_         309 PISNGHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASDQDQSSVELDK  357 (368)
T ss_dssp             CCEEEEEECEEEECCSSSCEEEEEETTTTEEEEEESSSCEEEEECCCCS
T ss_pred             EecCCCceeEEEECCCCCEEEEEEeCCCCeEEEEECCCCCEEEEEECCC
Confidence            7776677889999999973  4566678999999999999887665443

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.47  E-value=1.5e-11  Score=91.73  Aligned_cols=154  Identities=13%  Similarity=0.058  Sum_probs=111.2

Q ss_pred             EEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecC------CceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953         14 MWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTR------GKFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~------~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      ..++.|+|+|+.+ ++.+.|+++.+|+..+++........      ........+++++. ++..+.++.+.+|+.....
T Consensus       167 ~~~~~~s~~g~~~~v~~~~dg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~  245 (373)
T d2madh_         167 PTCYHIHPGAPSTFYLLCAQGGLAKTDHAGGAAGAGLVGAMLTAAQNLLTQPAQANKSGR-IVWPVYSGKILQADISAAG  245 (373)
T ss_pred             ceeEEEecCCCcEEEEEcCCCeEEEEEcCCceeeEEEeeeccccCccceeeeEEECCCce-EEEecCCceEEEEEcCCCe
Confidence            4578899999875 57888999999999988776544321      11223455666655 4455667888888765321


Q ss_pred             ----------c----------ccEEEEEEcCCCCEE----------EEEeCCCcEEEEecCCCceeeeeecCCcEEEEEE
Q psy10953         87 ----------S----------SWVLSTAFTRDGKFF----------ISASADHTVRVWNFARRENMHTFKHADQVWCVCV  136 (181)
Q Consensus        87 ----------~----------~~v~~~~~s~~~~~l----------~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~  136 (181)
                                .          .....++++|++..+          +....++.+.+||..+++.+..+.+...+.+++|
T Consensus       246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~~~d~~t~~~~~~~~~~~~~~~~a~  325 (373)
T d2madh_         246 ATNKAPIDALSGGRKADTWRPGGWQQVAYLKSSDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISLGHDVDAISV  325 (373)
T ss_pred             EEEEEeeccccCcEEeeeeccCcceeeEEecCCCeEEEecCCCceEEeecCCCeEEEEECCCCcEEEEecCCCCeeEEEE
Confidence                      0          112334566665543          3455567899999999998888888888999999


Q ss_pred             ccCCCE--EEEEcCCCcEEEEeCCCCeeEEEcCC
Q psy10953        137 APDGDK--FVSVGEDKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       137 sp~g~~--l~~~~~d~~v~i~~~~~~~~~~~~~~  168 (181)
                      +|||+.  +++++.|+.|++||..+++++....+
T Consensus       326 spDG~~~l~vt~~~d~~v~v~D~~tg~~~~~~~~  359 (373)
T d2madh_         326 AQDGGPDLYALSAGTEVLHIYDAGAGDQDQSTVE  359 (373)
T ss_pred             CCCCCEEEEEEeCCCCeEEEEECCCCCEEEEECC
Confidence            999984  46788899999999999999876653

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.46  E-value=6.6e-12  Score=92.96  Aligned_cols=153  Identities=15%  Similarity=0.202  Sum_probs=107.2

Q ss_pred             EEEEEcCCCCEEEEEe--CCCcEEEEeCCCCcEEEEEecCCceE-------EEEEECC----------------------
Q psy10953         15 WNVVFSPDDKYVLSGS--QSGKINLYGVETGKLEQIFDTRGKFT-------LSIAYST----------------------   63 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~--~d~~i~~~d~~~~~~~~~~~~~~~~~-------~~~~~s~----------------------   63 (181)
                      ..++|+|+|++++.++  .+..+.+|+..+++....+.......       ..+.+++                      
T Consensus       109 ~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dg~~~~v~~~~~~~~~~~~~~~  188 (355)
T d2bbkh_         109 WMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFPTAPDTFFMHCRDGSLAKVAFGTEGTPEITHTEV  188 (355)
T ss_dssp             GGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEECCSEEEEEEEETTEEEEEETTSCEEEEECCSSSCCEEEECCC
T ss_pred             ceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEecCCcceEeecCCcceEEEcCCCCEEEEEecCCCeEEEEeccc
Confidence            3578999999987764  45689999999888765544322100       1123333                      


Q ss_pred             ----------------CCCEEEEeeCCCcEEEEeCCCCCc--------------------ccEEEEEEcCCCCEEEEEeC
Q psy10953         64 ----------------DGHWIASGALDGIINIFDANTGHS--------------------SWVLSTAFTRDGKFFISASA  107 (181)
Q Consensus        64 ----------------d~~~l~~~~~d~~v~i~d~~~~~~--------------------~~v~~~~~s~~~~~l~~~~~  107 (181)
                                      ++..++..+.++.+++|+...+..                    .....++++|++..++....
T Consensus       189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~d~~~~~~~~~  268 (355)
T d2bbkh_         189 FHPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAKFLPAVEALTEAERADGWRPGGWQQVAYHRALDRIYLLVD  268 (355)
T ss_dssp             CSCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCEECCCEESSCHHHHHTTEEECSSSCEEEETTTTEEEEEEE
T ss_pred             ccceecceeeeccccCCCCeEEEecCCCeEEEEecCCCcEEEEeccCCcccceEeeeeeccceEEEEEeCCCCeEEEEec
Confidence                            344455566677888888754311                    01234778899887665543


Q ss_pred             C----------CcEEEEecCCCceeeeeecCCcEEEEEEccCCC--EEEEEcCCCcEEEEeCCCCeeEEEcC
Q psy10953        108 D----------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGD--KFVSVGEDKAVHMYSYKPEEEVEVNG  167 (181)
Q Consensus       108 d----------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~--~l~~~~~d~~v~i~~~~~~~~~~~~~  167 (181)
                      +          ..|.+||..+++.+..+.....+.+++|+|||+  ++++++.|+.|++||..+++.+....
T Consensus       269 ~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg~~~~~i~  340 (355)
T d2bbkh_         269 QRDEWRHKTASRFVVVLDAKTGERLAKFEMGHEIDSINVSQDEKPLLYALSTGDKTLYIHDAESGEELRSVN  340 (355)
T ss_dssp             ECCTTCTTSCEEEEEEEETTTCCEEEEEEEEEEECEEEECCSSSCEEEEEETTTTEEEEEETTTCCEEEEEC
T ss_pred             cCCceeecCCCCeEEEEeCCCCcEEEEecCCCCEEEEEEcCCCCeEEEEEECCCCEEEEEECCCCCEEEEEe
Confidence            3          369999999998888887767789999999998  35666779999999999999887554

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.44  E-value=6.2e-13  Score=103.06  Aligned_cols=140  Identities=14%  Similarity=0.175  Sum_probs=104.0

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC-----CceEEEEEECCCCCEEEEeeC---------CCcEEE
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR-----GKFTLSIAYSTDGHWIASGAL---------DGIINI   79 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~-----~~~~~~~~~s~d~~~l~~~~~---------d~~v~i   79 (181)
                      ..++.|.++++++..  .|+.+.+||..+++...++..+     ...+.++.|||||++|+.++.         ++.+.+
T Consensus        19 ~~~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l   96 (470)
T d2bgra1          19 LYSLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDI   96 (470)
T ss_dssp             CCCCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEE
T ss_pred             ccCCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEE
Confidence            356789999987754  4788999999999987766543     244668999999999987743         567889


Q ss_pred             EeCCCC-------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--c-----------------CCcEEE
Q psy10953         80 FDANTG-------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--H-----------------ADQVWC  133 (181)
Q Consensus        80 ~d~~~~-------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~-----------------~~~v~~  133 (181)
                      ||+.++       +...+..+.|||||+.++... +..+++|+..++.......  .                 .+....
T Consensus        97 ~d~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~~~~~~~~g~~d~~~~~~~~~~~~~  175 (470)
T d2bgra1          97 YDLNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTGKEDIIYNGITDWVYEEEVFSAYSA  175 (470)
T ss_dssp             EETTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCCBTTTEEESBCCHHHHHHTSSSSBC
T ss_pred             EECCCCcccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeeccCCCcccccccceeeeeeecCCccc
Confidence            999754       456788999999999998865 6789999988776443221  1                 122345


Q ss_pred             EEEccCCCEEEEEcCCC-cEEEEe
Q psy10953        134 VCVAPDGDKFVSVGEDK-AVHMYS  156 (181)
Q Consensus       134 ~~~sp~g~~l~~~~~d~-~v~i~~  156 (181)
                      +.|||||++|+....|. .+..|.
T Consensus       176 ~~wSPDGk~ia~~~~d~~~v~~~~  199 (470)
T d2bgra1         176 LWWSPNGTFLAYAQFNDTEVPLIE  199 (470)
T ss_dssp             EEECTTSSEEEEEEEECTTCCEEE
T ss_pred             cEECCCCCccceeEecCCcCceEE
Confidence            78999999999987653 354444

>d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]

Probab=99.43  E-value=9.5e-12  Score=92.88  Aligned_cols=150  Identities=9%  Similarity=-0.037  Sum_probs=108.3

Q ss_pred             CeeeEEEEEEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CC
Q psy10953         10 GPVDMWNVVFSPDDKYVLSGS-----QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LD   74 (181)
Q Consensus        10 ~~~~~~~~~~s~~g~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d   74 (181)
                      ....+..++++|||++++...     .++.+.+||..+++.+..+.....  ..+.|+|||++|+++.          .+
T Consensus        19 ~~~p~~~~a~spdg~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~~--~~~a~SpDG~~l~va~~~~~~~~~~~~~   96 (373)
T d2madh_          19 ADGPTNDEAPGADGRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGFL--PNPVAAHSGSEFALASTSFSRIAKGKRT   96 (373)
T ss_pred             CCCCccccccCCCCCEEEEEcccccCCCceEEEEECCCCCEEEEEeCCCC--ccEEEcCCCCEEEEEeecCCcccccccc
Confidence            334467889999999987642     345799999999999887764433  2689999999998764          35


Q ss_pred             CcEEEEeCCCCCcc---------------cEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeeecCCcEEEEEEc
Q psy10953         75 GIINIFDANTGHSS---------------WVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFKHADQVWCVCVA  137 (181)
Q Consensus        75 ~~v~i~d~~~~~~~---------------~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~s  137 (181)
                      +.|.+||+.++...               ....+.|+++++.++...  .+..+.+|+....+....   .....++.++
T Consensus        97 ~~v~v~D~~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~s  173 (373)
T d2madh_          97 DYVEVFDPVTFLPIADIELPDAPRFDVGPYSWMNANTPNNADLLFFQFAAGPAVGLVVQGGSSDDQL---LSSPTCYHIH  173 (373)
T ss_pred             eEEEEEECCCCcEEEEEecCCcceeEeccCCCcEEEEeCCCcEEEEEEcCCCceEEeeccCCeEEEE---eccceeEEEe
Confidence            78999999865321               123467888888654443  456788888776654433   2345678899


Q ss_pred             cCCCEE-EEEcCCCcEEEEeCCCCeeEE
Q psy10953        138 PDGDKF-VSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       138 p~g~~l-~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      |+|+.+ ++.+.|+.+.+|+...+....
T Consensus       174 ~~g~~~~v~~~~dg~~~~~~~~~~~~~~  201 (373)
T d2madh_         174 PGAPSTFYLLCAQGGLAKTDHAGGAAGA  201 (373)
T ss_pred             cCCCcEEEEEcCCCeEEEEEcCCceeeE
Confidence            999865 677889999999987665443

>d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Quinohemoprotein amine dehydrogenase B chain
domain: Quinohemoprotein amine dehydrogenase B chain
species: Pseudomonas putida [TaxId: 303]

Probab=99.33  E-value=3.5e-12  Score=93.62  Aligned_cols=103  Identities=8%  Similarity=0.111  Sum_probs=81.2

Q ss_pred             EEECCCCCEEEEeeCCCcEEEEeCCCCC---------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCceeeeeecC
Q psy10953         59 IAYSTDGHWIASGALDGIINIFDANTGH---------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRENMHTFKHA  128 (181)
Q Consensus        59 ~~~s~d~~~l~~~~~d~~v~i~d~~~~~---------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~~~~~~~  128 (181)
                      +++++++++|++++.++.|++||+.++.         ...+.+++|+|||+++ +++..++.|++||+.+++.+..+...
T Consensus         2 ~a~~~~~~~l~~~~~~~~v~v~D~~t~~~~~t~~~~~~~~p~~l~~spDG~~l~v~~~~~~~v~~~d~~t~~~~~~~~~~   81 (346)
T d1jmxb_           2 PALKAGHEYMIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMAPDNRTAYVLNNHYGDIYGIDLDTCKNTFHANLS   81 (346)
T ss_dssp             CCCCTTCEEEEEEETTTEEEEEETTTTEEEEEEECSSCCSSCEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEESC
T ss_pred             ccCCCCCcEEEEEcCCCEEEEEECCCCCEEEEEEcCCCCCcceEEECCCCCEEEEEECCCCcEEEEeCccCeeeeeeccc
Confidence            4689999999999999999999998642         3346689999999976 55667899999999999877766422


Q ss_pred             -------CcEEEEEEccCCCEEEEEc------------CCCcEEEEeCCCCe
Q psy10953        129 -------DQVWCVCVAPDGDKFVSVG------------EDKAVHMYSYKPEE  161 (181)
Q Consensus       129 -------~~v~~~~~sp~g~~l~~~~------------~d~~v~i~~~~~~~  161 (181)
                             ..+..++|+|||+++++++            .+..+.+|+..++.
T Consensus        82 ~~~~~~~~~~~~v~~s~DG~~l~v~~~~~~~~~~~~~~~~~~i~~~~~~~~~  133 (346)
T d1jmxb_          82 SVPGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGL  133 (346)
T ss_dssp             CSTTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGG
T ss_pred             ccccccCCceEEEEEecCCCEEEEEecCCcceeeeeccCcceEEEEecccce
Confidence                   1345789999999988765            35678888876543

>d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.24  E-value=5.9e-10  Score=82.16  Aligned_cols=107  Identities=19%  Similarity=0.222  Sum_probs=79.7

Q ss_pred             EEcCCCCEEEEEe-----CCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe----------eCCCcEEEEeC
Q psy10953         18 VFSPDDKYVLSGS-----QSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG----------ALDGIINIFDA   82 (181)
Q Consensus        18 ~~s~~g~~l~~~~-----~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~----------~~d~~v~i~d~   82 (181)
                      +.+|||+++++..     .+.++.+||..+++.+..+......  .++|||||++|++.          ..|+.|.+||+
T Consensus         8 a~spdg~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~~~--~~a~SpDg~~l~v~~~~~~~~~~g~~d~~v~v~D~   85 (355)
T d2bbkh_           8 APAPDARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGFLP--NPVVADDGSFIAHASTVFSRIARGERTDYVEVFDP   85 (355)
T ss_dssp             CCCCCTTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECSSC--EEEECTTSSCEEEEEEEEEETTEEEEEEEEEEECT
T ss_pred             eeCCCCCEEEEEecccCCCcCeEEEEECCCCcEEEEEECCCCC--ceEEcCCCCEEEEEeCCCccccccCCCCEEEEEEC
Confidence            4589999997653     4567999999999988877654333  68999999988764          34789999998


Q ss_pred             CCCCcc---------------cEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeee
Q psy10953         83 NTGHSS---------------WVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFK  126 (181)
Q Consensus        83 ~~~~~~---------------~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~  126 (181)
                      .++...               ....++|+|+|++++.++  .+..+++|+..+++.+..+.
T Consensus        86 ~t~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~~v~~~~~~~~~~~~~~~~~~~~~~~~  146 (355)
T d2bbkh_          86 VTLLPTADIELPDAPRFLVGTYPWMTSLTPDGKTLLFYQFSPAPAVGVVDLEGKAFKRMLD  146 (355)
T ss_dssp             TTCCEEEEEEETTCCCCCBSCCGGGEEECTTSSEEEEEECSSSCEEEEEETTTTEEEEEEE
T ss_pred             CCCCEEEEEecCCcceeecCCCCceEEEecCCCeeEEecCCCCceeeeeecCCCcEeeEEe
Confidence            764311               123468999999877665  45689999998887665554

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=8.2e-09  Score=73.42  Aligned_cols=162  Identities=16%  Similarity=0.224  Sum_probs=100.2

Q ss_pred             eeeccCeeeEEEEEEcCCCCEEEEEeCCC---cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-CCcEEEE
Q psy10953          5 SKINVGPVDMWNVVFSPDDKYVLSGSQSG---KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-DGIINIF   80 (181)
Q Consensus         5 ~~~~~~~~~~~~~~~s~~g~~l~~~~~d~---~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d~~v~i~   80 (181)
                      ..++.++..+...+|||||+.||......   .+.+.+..++........ ........|+|+|+.++.... ++...++
T Consensus        32 ~~l~~~~~~~~sP~wSPDGk~IAf~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~i~~~~~~~~~~~~~  110 (269)
T d2hqsa1          32 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASF-PRHNGAPAFSPDGSKLAFALSKTGSLNLY  110 (269)
T ss_dssp             EEEEEESSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTTCCEEEEECC-SSCEEEEEECTTSSEEEEEECTTSSCEEE
T ss_pred             EEEecCCCceeeeEECCCCCEEEEEEeeccCcceeeeecccCceeEEeee-ecccccceecCCCCeeeEeeecCCcccee
Confidence            44445556667889999999998765433   466677777766555443 334457899999998876543 2111111


Q ss_pred             --eCC--------------------------------------------CC-------CcccEEEEEEcCCCCEEEEEeC
Q psy10953         81 --DAN--------------------------------------------TG-------HSSWVLSTAFTRDGKFFISASA  107 (181)
Q Consensus        81 --d~~--------------------------------------------~~-------~~~~v~~~~~s~~~~~l~~~~~  107 (181)
                        ...                                            .+       .........|+|+++.++..+.
T Consensus       111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~~~~~~~~~~spdg~~~~~~~~  190 (269)
T d2hqsa1         111 VMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMVMVSS  190 (269)
T ss_dssp             EEETTTCCEEECCCCSSCEEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCSSSEEEEEEECTTSSEEEEEEE
T ss_pred             ecccccccceeeeeccccccccccccccccceecccccCCceEeeeecccccceeeecccccccccccccccceeEEEee
Confidence              110                                            00       1112345689999998777665


Q ss_pred             C-Cc--EEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC---CCcEEEEeCCCCeeEEEcCC
Q psy10953        108 D-HT--VRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE---DKAVHMYSYKPEEEVEVNGG  168 (181)
Q Consensus       108 d-~~--i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~---d~~v~i~~~~~~~~~~~~~~  168 (181)
                      + +.  +.+.+...+.. .............|||||+.|+-.+.   ...++++++..+....+...
T Consensus       191 ~~~~~~i~~~~~~~~~~-~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~  256 (269)
T d2hqsa1         191 NGGQQHIAKQDLATGGV-QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPAT  256 (269)
T ss_dssp             CSSCEEEEEEETTTCCE-EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCS
T ss_pred             cCCceeeeEeecccccc-eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCC
Confidence            4 33  44445444432 23334455678899999999876553   34688899987766655554

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=99.13  E-value=1e-08  Score=77.00  Aligned_cols=148  Identities=16%  Similarity=0.271  Sum_probs=98.7

Q ss_pred             eEEEEEEcCCCCEEEEEeC-CCcEEEEeCC-CCcEEEE--Eec--CCceEEEEEECCCCCEEEEee-CCCcEEEEeCCCC
Q psy10953         13 DMWNVVFSPDDKYVLSGSQ-SGKINLYGVE-TGKLEQI--FDT--RGKFTLSIAYSTDGHWIASGA-LDGIINIFDANTG   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~-d~~i~~~d~~-~~~~~~~--~~~--~~~~~~~~~~s~d~~~l~~~~-~d~~v~i~d~~~~   85 (181)
                      .+.+++|+|||+++++++. ...|.+|+.. +++....  ...  .+.....+.|+|++++++... .++.|.+|+....
T Consensus       146 h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         146 GIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAMHPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             cceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEECCCCceEEEeccCCCEEEEEEecCC
Confidence            3579999999999887753 4578888764 3443321  111  234456899999999886654 5788999987532


Q ss_pred             Cc---------------------------ccEEEEEEcCCCCEEEEEeC-C-----CcEEEEecCCCceeee---ee---
Q psy10953         86 HS---------------------------SWVLSTAFTRDGKFFISASA-D-----HTVRVWNFARRENMHT---FK---  126 (181)
Q Consensus        86 ~~---------------------------~~v~~~~~s~~~~~l~~~~~-d-----~~i~v~d~~~~~~~~~---~~---  126 (181)
                      ..                           .....+.++|+|++|+++.. +     ..|..|++.....+..   ..   
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~lyvsnr~~~~~~~~~i~~~~~~~~g~~~~~~~~~~~~  305 (365)
T d1jofa_         226 THMPVYTHHSFPLIPPGIPDRDPETGKGLYRADVCALTFSGKYMFASSRANKFELQGYIAGFKLRDCGSIEKQLFLSPTP  305 (365)
T ss_dssp             TCCEEEEEEEEESSCTTCCCBCTTTSSBSEEEEEEEECTTSSEEEEEEEESSTTSCCEEEEEEECTTSCEEEEEEEEECS
T ss_pred             CceEEEEeeeeccccccccccccccccccCCccceEECCCCCEEEEEcccCCCccceEEEEEEecCCCceeeEeEeeEEE
Confidence            11                           12456889999998877653 1     2377777654322211   11   


Q ss_pred             -cCCcEEEEEEcc-CCCEEEEEc-CCCcEEEEeCCCC
Q psy10953        127 -HADQVWCVCVAP-DGDKFVSVG-EDKAVHMYSYKPE  160 (181)
Q Consensus       127 -~~~~v~~~~~sp-~g~~l~~~~-~d~~v~i~~~~~~  160 (181)
                       .....++++++| +|++|+++. .++.|.+|++..+
T Consensus       306 ~~G~~p~~i~~~p~~G~~l~va~~~s~~v~v~~~~~~  342 (365)
T d1jofa_         306 TSGGHSNAVSPCPWSDEWMAITDDQEGWLEIYRWKDE  342 (365)
T ss_dssp             SCCTTCCCEEECTTCTTEEEEECSSSCEEEEEEEETT
T ss_pred             cCCCCccEEEecCCCCCEEEEEeCCCCeEEEEEEeCC
Confidence             223567899998 899887776 5689999988654

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=99.10  E-value=2.3e-09  Score=82.27  Aligned_cols=147  Identities=14%  Similarity=0.056  Sum_probs=98.2

Q ss_pred             eEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEEec-CCceEEEEEECCCCCEE--EEeeCCC-------------
Q psy10953         13 DMWNVVFSPDDKYVLSG-SQSGKINLYGVETGKLEQIFDT-RGKFTLSIAYSTDGHWI--ASGALDG-------------   75 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~~~~~~~~~~-~~~~~~~~~~s~d~~~l--~~~~~d~-------------   75 (181)
                      ..+...++|||++|++. ..+.+|.++|+++.+....+.. .+.....++|+|+|+++  +..+.+.             
T Consensus        73 ~~s~t~gtpDGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~spdg~t~YV~~~~~~~v~~~~dg~~~~~~  152 (441)
T d1qnia2          73 HISMTDGRYDGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRLQKVPKTNYVFCNAEFVIPQPNDGTDFSLD  152 (441)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEECCSSBCCEEEEEECSCEESSCSSSCCCGG
T ss_pred             CcceecccCCCCEEEEEcCCCCEEEEEECCCCcEeeEEecCCCCCccceEEeccCCEEEEEeccCCcccccCcccccccc
Confidence            44556678999999655 4678999999999998877654 34445689999999853  3333322             


Q ss_pred             ----cEEEEeCCCCCc-------ccEEEEEEcCCCCEEEEEeCCC-----------------------------------
Q psy10953         76 ----IINIFDANTGHS-------SWVLSTAFTRDGKFFISASADH-----------------------------------  109 (181)
Q Consensus        76 ----~v~i~d~~~~~~-------~~v~~~~~s~~~~~l~~~~~d~-----------------------------------  109 (181)
                          .+..+|..+...       .....++++|+|+++++.+.+.                                   
T Consensus       153 ~~~~~~~~iD~~t~~v~~qI~v~~~p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~  232 (441)
T d1qnia2         153 NSYTMFTAIDAETMDVAWQVIVDGNLDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFK  232 (441)
T ss_dssp             GEEEEEEEEETTTCSEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCB
T ss_pred             cccceEEeecCccceeeEEEecCCCccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEE
Confidence                123456554321       2245688999999887776432                                   


Q ss_pred             ------cEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEE-cCCCcEEEEeCCC
Q psy10953        110 ------TVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSV-GEDKAVHMYSYKP  159 (181)
Q Consensus       110 ------~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~-~~d~~v~i~~~~~  159 (181)
                            .+.+++......+..++-....++++++|||++++++ ..++.|.+|++.+
T Consensus       233 ~v~~~~v~vvd~~~~~~v~~~IPvgksPhGv~vSPDGkyl~~~~~~~~tvsv~d~~k  289 (441)
T d1qnia2         233 TIGDSKVPVVDGRGESEFTRYIPVPKNPHGLNTSPDGKYFIANGKLSPTVSVIAIDK  289 (441)
T ss_dssp             CCTTCCCCEEECSSSCSSEEEECCBSSCCCEEECTTSCEEEEECTTSSBEEEEEGGG
T ss_pred             EeCCCCcEEEEcccCCceEEEEeCCCCccCceECCCCCEEEEeCCcCCcEEEEEeeh
Confidence                  2223333333344455545567889999999987654 5689999999854

>d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase
family: Methylamine dehydrogenase, H-chain
domain: Methylamine dehydrogenase, H-chain
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.03  E-value=3e-09  Score=79.36  Aligned_cols=140  Identities=7%  Similarity=-0.134  Sum_probs=91.6

Q ss_pred             EEEEEcCCCCEEE---EEeCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee----------CCCcEEE
Q psy10953         15 WNVVFSPDDKYVL---SGSQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA----------LDGIINI   79 (181)
Q Consensus        15 ~~~~~s~~g~~l~---~~~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~----------~d~~v~i   79 (181)
                      ..++.+++++...   .+..++  .+.++|..+++.+..+......  .+.|+|||+.|++.+          .|+.|.+
T Consensus        23 ~~~a~~~~~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~~--~~a~spDg~~i~~~~~~~~~~~~g~~d~~v~v  100 (368)
T d1mdah_          23 CDHGPGAISRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFLS--LAVAGHSGSDFALASTSFARSAKGKRTDYVEV  100 (368)
T ss_dssp             BCCCCCCCTTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTTC--EEEECTTSSCEEEEEEEETTTTSSSEEEEEEE
T ss_pred             cccccCCCCcceeEEeeccCCCcceEEEEeCCCCcEEEEEeCCCCC--cceECCCCCEEEEEcccCccccccccCCeEEE
Confidence            4456678888643   233444  4667799999988877655443  588999999888754          4678999


Q ss_pred             EeCCCCCcc---------------cEEEEEEcCCCCEEEEEe-CCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEE
Q psy10953         80 FDANTGHSS---------------WVLSTAFTRDGKFFISAS-ADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        80 ~d~~~~~~~---------------~v~~~~~s~~~~~l~~~~-~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l  143 (181)
                      ||..++...               ....++|+|||++++.+. .++.+.+||+.+++....+..+.....  .......+
T Consensus       101 ~D~~t~~~~~~i~~p~~~~~~~g~~p~~~a~SpDGk~l~va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~--~~~~~~~~  178 (368)
T d1mdah_         101 FDPVTFLPIADIELPDAPRFSVGPRVHIIGNCASSACLLFFLFGSSAAAGLSVPGASDDQLTKSASCFHI--HPGAAATH  178 (368)
T ss_dssp             ECTTTCCEEEEEEETTSCSCCBSCCTTSEEECTTSSCEEEEECSSSCEEEEEETTTEEEEEEECSSCCCC--EEEETTEE
T ss_pred             EECCCCcEeeeecCCccceecccCCccceEECCCCCEEEEEeCCCCeEEEEECCCCcEeEEeeccCcceE--ccCCCceE
Confidence            998765321               122478999999887665 578999999999887777653322110  01122344


Q ss_pred             EEEcCCCcEEEEeCC
Q psy10953        144 VSVGEDKAVHMYSYK  158 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~  158 (181)
                      +..+.|+.+..+++.
T Consensus       179 v~~~~Dg~~~~~~~~  193 (368)
T d1mdah_         179 YLGSCPASLAASDLA  193 (368)
T ss_dssp             ECCCCTTSCEEEECC
T ss_pred             EEEcCCCCEEEEEec
Confidence            445555555555543

>d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl peptidase IV/CD26, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.03  E-value=8.6e-10  Score=85.03  Aligned_cols=109  Identities=15%  Similarity=0.260  Sum_probs=86.0

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCC-------------cccEEEEEEcCCCCEEEEEeC---------CCcEEEEe
Q psy10953         58 SIAYSTDGHWIASGALDGIINIFDANTGH-------------SSWVLSTAFTRDGKFFISASA---------DHTVRVWN  115 (181)
Q Consensus        58 ~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------------~~~v~~~~~s~~~~~l~~~~~---------d~~i~v~d  115 (181)
                      .+.|.+|++++..  .++.+.+||+.++.             ...+.+++|||||++|+.++.         ++.+.+||
T Consensus        21 ~~~W~~d~~~~~~--~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~SpDg~~i~~~~~~~~~~r~s~~~~~~l~d   98 (470)
T d2bgra1          21 SLRWISDHEYLYK--QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVKQWRHSYTASYDIYD   98 (470)
T ss_dssp             CCEECSSSEEEEE--SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEECTTSSEEEEEEEEEECSSSCEEEEEEEEE
T ss_pred             CCEeCCCCEEEEE--cCCcEEEEECCCCCEEEEEchhhhhhccCccceeEECCCCCEEEEEECCcceeeeccCceEEEEE
Confidence            5788999886653  46789999987653             245788999999999887753         46788999


Q ss_pred             cCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeEEEcCCC
Q psy10953        116 FARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEVEVNGGG  169 (181)
Q Consensus       116 ~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~~~~~~~  169 (181)
                      +.+++......++..+..+.|||||+.++... ++.+++|+...+.+..+...+
T Consensus        99 ~~~~~~~~l~~~~~~~~~~~~SPDG~~ia~~~-~~~l~~~~~~~g~~~~~t~~~  151 (470)
T d2bgra1          99 LNKRQLITEERIPNNTQWVTWSPVGHKLAYVW-NNDIYVKIEPNLPSYRITWTG  151 (470)
T ss_dssp             TTTTEECCSSCCCTTEEEEEECSSTTCEEEEE-TTEEEEESSTTSCCEECCSCC
T ss_pred             CCCCcccccccCCccccccccccCcceeeEee-cccceEEECCCCceeeeeecc
Confidence            99987655445778899999999999999864 678999999988877665543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.00  E-value=1.2e-07  Score=68.20  Aligned_cols=144  Identities=11%  Similarity=0.273  Sum_probs=106.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC--CceEEEEEECCCCCEEEEeeCCCcEEEEeCCC-------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR--GKFTLSIAYSTDGHWIASGALDGIINIFDANT-------   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~-------   84 (181)
                      ...+++.++|+++++....+.+.+++. +++.+..+...  ......++++++++.+++....+.|++||...       
T Consensus       116 p~~~avd~~G~i~v~~~~~~~~~~~~~-~g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~~d~~G~~~~~~g  194 (279)
T d1q7fa_         116 PRGVTVDNKGRIIVVECKVMRVIIFDQ-NGNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKVFNYEGQYLRQIG  194 (279)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECT-TSCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEEEETTCCEEEEES
T ss_pred             cceeccccCCcEEEEeeccceeeEecc-CCceeecccccccccccceeeeccceeEEeeeccccceeeeecCCceeeeec
Confidence            467889999998888777778888875 45666555332  23345788999999888888889999999753       


Q ss_pred             --CCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         85 --GHSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        85 --~~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                        +.......++++++|+.+++-+. ++.|.+|+. +++.+..+.   .....+.+++.|+|++++ ++.++.|++|++.
T Consensus       195 ~~g~~~~P~giavD~~G~i~Vad~~~~~~v~~f~~-~G~~~~~~~~~~~~~~p~~vav~~dG~l~V-~~~n~~v~~fr~~  272 (279)
T d1q7fa_         195 GEGITNYPIGVGINSNGEILIADNHNNFNLTIFTQ-DGQLISALESKVKHAQCFDVALMDDGSVVL-ASKDYRLYIYRYV  272 (279)
T ss_dssp             CTTTSCSEEEEEECTTCCEEEEECSSSCEEEEECT-TSCEEEEEEESSCCSCEEEEEEETTTEEEE-EETTTEEEEEECS
T ss_pred             ccccccCCcccccccCCeEEEEECCCCcEEEEECC-CCCEEEEEeCCCCCCCEeEEEEeCCCcEEE-EeCCCeEEEEEee
Confidence              23445788999999998776543 456999984 455555553   234688999999997655 5578899999997


Q ss_pred             CC
Q psy10953        159 PE  160 (181)
Q Consensus       159 ~~  160 (181)
                      +.
T Consensus       273 ~~  274 (279)
T d1q7fa_         273 QL  274 (279)
T ss_dssp             CC
T ss_pred             ee
Confidence            64

>d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Pseudomonas nautica [TaxId: 2743]

Probab=98.91  E-value=3.8e-09  Score=81.07  Aligned_cols=138  Identities=17%  Similarity=0.205  Sum_probs=94.8

Q ss_pred             EEEEEEcCCCCEEEEEeCC-----------------------------------------CcEEEEeCCCCcEEEEEecC
Q psy10953         14 MWNVVFSPDDKYVLSGSQS-----------------------------------------GKINLYGVETGKLEQIFDTR   52 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d-----------------------------------------~~i~~~d~~~~~~~~~~~~~   52 (181)
                      ...++|+|||+++++++.+                                         +.+.+++....+....+...
T Consensus       178 p~~v~~spdGk~a~vt~~nse~~~~id~~t~~~~d~i~v~n~p~~~~~~~dGk~~~v~~~~v~vvd~~~~~~v~~~IPvg  257 (441)
T d1qnia2         178 LDNTDADYTGKYATSTCYNSERAVDLAGTMRNDRDWVVVFNVERIAAAVKAGNFKTIGDSKVPVVDGRGESEFTRYIPVP  257 (441)
T ss_dssp             CCCEEECSSSSEEEEEESCTTCCSSHHHHTCSSBCEEEEEEHHHHHHHHHTTCCBCCTTCCCCEEECSSSCSSEEEECCB
T ss_pred             ccceEECCCCCEEEEEecCCCceEEEeccCcceEEEEEeCCccceEEEecCCCEEEeCCCCcEEEEcccCCceEEEEeCC
Confidence            5679999999999877643                                         23445555555555555443


Q ss_pred             CceEEEEEECCCCCEEE-EeeCCCcEEEEeCCC---------CCc----------ccEEEEEEcCCCCEEEEEeCCCcEE
Q psy10953         53 GKFTLSIAYSTDGHWIA-SGALDGIINIFDANT---------GHS----------SWVLSTAFTRDGKFFISASADHTVR  112 (181)
Q Consensus        53 ~~~~~~~~~s~d~~~l~-~~~~d~~v~i~d~~~---------~~~----------~~v~~~~~s~~~~~l~~~~~d~~i~  112 (181)
                      ... ..+.++|||++++ ++..+++|.+||+.+         .+.          ......+|+++|+.+.+...|..|.
T Consensus       258 ksP-hGv~vSPDGkyl~~~~~~~~tvsv~d~~k~~~~~~~~~~~~~~~~~~~~~glgplh~~fd~~g~~yts~~~ds~v~  336 (441)
T d1qnia2         258 KNP-HGLNTSPDGKYFIANGKLSPTVSVIAIDKLDDLFEDKIELRDTIVAEPELGLGPLHTTFDGRGNAYTTLFIDSQVC  336 (441)
T ss_dssp             SSC-CCEEECTTSCEEEEECTTSSBEEEEEGGGHHHHTTTSSCGGGGEEECCBCCSCEEEEEECSSSEEEEEETTTTEEE
T ss_pred             CCc-cCceECCCCCEEEEeCCcCCcEEEEEeehhhhHhhccCCcceEEEeecccccCcccceecCCceEEEcccccceEE
Confidence            333 4789999999875 577899999999753         111          1245678999999999999999999


Q ss_pred             EEecCC---------C-ceeeee------ecCCcEEEEEEccCCCEEEEE---cCCCcE
Q psy10953        113 VWNFAR---------R-ENMHTF------KHADQVWCVCVAPDGDKFVSV---GEDKAV  152 (181)
Q Consensus       113 v~d~~~---------~-~~~~~~------~~~~~v~~~~~sp~g~~l~~~---~~d~~v  152 (181)
                      .|++..         . .....+      .|...+.+.+++|||++|+++   |.|+.+
T Consensus       337 kw~~~~~~~~~~~~~~~~v~~~~~v~y~~GH~~~~~~~t~~pdGk~l~s~~k~s~dr~~  395 (441)
T d1qnia2         337 KWNIADAIKHYNGDRVNYIRQKLDVQYQPGHNHASLTESRDADGKWLVVLSKFSKDRFL  395 (441)
T ss_dssp             EEEHHHHHHHHTTCCCCCEEEEEECSSCEEEEEETTTTSTTCCCCEEEEEESCCGGGSC
T ss_pred             EeccchhhhhhccCCCceeEeccccccCCCCCccccccccCCCCcEEEecCccccccCc
Confidence            999741         1 122222      233344556789999999999   556554

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=98.88  E-value=1.3e-07  Score=67.15  Aligned_cols=85  Identities=16%  Similarity=0.303  Sum_probs=56.8

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC-C-----CcEEEEeCCCCCc--
Q psy10953         18 VFSPD--DKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL-D-----GIINIFDANTGHS--   87 (181)
Q Consensus        18 ~~s~~--g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~-d-----~~v~i~d~~~~~~--   87 (181)
                      .+|||  |+.++..+ ++.|.+.|+.+++..++.... ......+|||||++|+.... +     ..+.++++..+..  
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~-~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~   82 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNL-GVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKR   82 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSS-SEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEE
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCC-CcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEE
Confidence            46788  99988664 567888899998876654443 34557899999999986532 2     2366666654321  


Q ss_pred             ------------ccEEEEEEcCCCCEEEE
Q psy10953         88 ------------SWVLSTAFTRDGKFFIS  104 (181)
Q Consensus        88 ------------~~v~~~~~s~~~~~l~~  104 (181)
                                  ......+|+|+|+.++.
T Consensus        83 lt~~~~~~~~~~~~~~~~~~spdg~~l~~  111 (281)
T d1k32a2          83 ITYFSGKSTGRRMFTDVAGFDPDGNLIIS  111 (281)
T ss_dssp             CCCCCEEEETTEECSEEEEECTTCCEEEE
T ss_pred             eeecCCCccCccccccccccCCCCCEEEE
Confidence                        12345677888876654

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.87  E-value=5.9e-07  Score=65.20  Aligned_cols=143  Identities=11%  Similarity=0.097  Sum_probs=99.5

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC--------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG--------   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~--------   85 (181)
                      +.+++++|||+++++...+++|..++-. ++...... ......+++|++||+++++...++.+..++....        
T Consensus        30 ~e~iAv~pdG~l~vt~~~~~~I~~i~p~-g~~~~~~~-~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~  107 (302)
T d2p4oa1          30 LENLASAPDGTIFVTNHEVGEIVSITPD-GNQQIHAT-VEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLL  107 (302)
T ss_dssp             EEEEEECTTSCEEEEETTTTEEEEECTT-CCEEEEEE-CSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEE
T ss_pred             cCCEEECCCCCEEEEeCCCCEEEEEeCC-CCEEEEEc-CCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeecc
Confidence            5689999999999999989999888854 44444333 3344668999999998888888888877765321        


Q ss_pred             ---CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-----------cCCcEEEEEEccCCCEEEEEcCCCc
Q psy10953         86 ---HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-----------HADQVWCVCVAPDGDKFVSVGEDKA  151 (181)
Q Consensus        86 ---~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-----------~~~~v~~~~~sp~g~~l~~~~~d~~  151 (181)
                         .......+++.++|+++++-+.++.+..+|...+.......           .......++++. +..+++.+..+.
T Consensus       108 ~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~  186 (302)
T d2p4oa1         108 TLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKML  186 (302)
T ss_dssp             ECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTE
T ss_pred             ccCCccccceeEEccCCCEEeeccccccceeeeccCCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCe
Confidence               23456789999999999988888899999887654222111           112345565543 234455556777


Q ss_pred             EEEEeCCC
Q psy10953        152 VHMYSYKP  159 (181)
Q Consensus       152 v~i~~~~~  159 (181)
                      |..++...
T Consensus       187 i~~~~~~~  194 (302)
T d2p4oa1         187 LLRIPVDS  194 (302)
T ss_dssp             EEEEEBCT
T ss_pred             EEeccccc
Confidence            87777644

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.86  E-value=1.5e-06  Score=63.68  Aligned_cols=145  Identities=14%  Similarity=0.113  Sum_probs=96.9

Q ss_pred             EEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC----CCcEEEEeCCCCC----
Q psy10953         15 WNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL----DGIINIFDANTGH----   86 (181)
Q Consensus        15 ~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~----d~~v~i~d~~~~~----   86 (181)
                      -.++|.++|++.++-...++|..|+..+++....+.........+++++||+++++...    .+.+...+.....    
T Consensus        43 EG~~~D~~G~Ly~~D~~~g~I~ri~p~g~~~~~~~~~~~~~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~  122 (319)
T d2dg1a1          43 EGLNFDRQGQLFLLDVFEGNIFKINPETKEIKRPFVSHKANPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDI  122 (319)
T ss_dssp             EEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECSSSSEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEE
T ss_pred             EeCEECCCCCEEEEECCCCEEEEEECCCCeEEEEEeCCCCCeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeee
Confidence            47899999997777778889999998877766655444444568999999998876543    2334444443321    


Q ss_pred             ------cccEEEEEEcCCCCEEEEEeCC------CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEE-EEcCCCcEE
Q psy10953         87 ------SSWVLSTAFTRDGKFFISASAD------HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFV-SVGEDKAVH  153 (181)
Q Consensus        87 ------~~~v~~~~~s~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~-~~~~d~~v~  153 (181)
                            ......++++|+|++.++-...      +.++.++............-...+.++|+|+++.|+ +-+..+.|.
T Consensus       123 ~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~  202 (319)
T d2dg1a1         123 IEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLH  202 (319)
T ss_dssp             ECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEE
T ss_pred             ccCCCcccCCcceeEEeccceeecccccccccCcceeEEEecccceeEEEeeccceeeeeeeccccceEEEecccCCceE
Confidence                  2346788999999987764332      235555544333222222233568899999998764 445678999


Q ss_pred             EEeCCC
Q psy10953        154 MYSYKP  159 (181)
Q Consensus       154 i~~~~~  159 (181)
                      .|++..
T Consensus       203 ~~d~~~  208 (319)
T d2dg1a1         203 RIALED  208 (319)
T ss_dssp             EEEECT
T ss_pred             EEEEcC
Confidence            998754

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.85  E-value=2.5e-07  Score=65.82  Aligned_cols=146  Identities=11%  Similarity=0.122  Sum_probs=102.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC-------
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH-------   86 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~-------   86 (181)
                      ...++++++|++.++....+.+++++-.+......... .....+++++++++++++-..+..+..++.....       
T Consensus        59 p~gvav~~~g~i~v~d~~~~~i~~~~~~~~~~~~~~~~-~~~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~  137 (260)
T d1rwia_          59 PQGLAVDGAGTVYVTDFNNRVVTLAAGSNNQTVLPFDG-LNYPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFT  137 (260)
T ss_dssp             CCCEEECTTCCEEEEETTTEEEEECTTCSCCEECCCCS-CCSEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCC
T ss_pred             ceEEEEcCCCCEEEeeeeeceeeeeeeccceeeeeeee-eeecccccccccceeEeeccccccccccccccceeeeeeec
Confidence            46789999999887777666777665554443322221 2234689999999987776666677777654321       


Q ss_pred             -cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-eecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCC
Q psy10953         87 -SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPE  160 (181)
Q Consensus        87 -~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~  160 (181)
                       ......++++|+|+.+++...++.|..+|......... .......+.++++++|+.+++....+.|..++....
T Consensus       138 ~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~  213 (260)
T d1rwia_         138 GLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPFTDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGST  213 (260)
T ss_dssp             SCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCCSSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCS
T ss_pred             ccCCcceeeecCCCCEeeeccccccccccccccceeeeeeccccCCCccceeeeeeeeeeeecCCCEEEEEeCCCC
Confidence             23456789999999888888888999999775443322 233456789999999998888888888888876544

>d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Serine/threonine-protein kinase PknD
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.84  E-value=3.4e-07  Score=65.16  Aligned_cols=145  Identities=9%  Similarity=0.050  Sum_probs=101.0

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCC-------
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTG-------   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~-------   85 (181)
                      ...+++++++|+++++-.....+..++.............-....+++++++|+.+++...++.+..+|....       
T Consensus        99 ~p~~iavd~~g~i~v~d~~~~~~~~~~~~~~~~~~~~~~~~~~p~~i~~~~~g~~~v~~~~~~~i~~~d~~~~~~~~~~~  178 (260)
T d1rwia_          99 YPEGLAVDTQGAVYVADRGNNRVVKLAAGSKTQTVLPFTGLNDPDGVAVDNSGNVYVTDTDNNRVVKLEAESNNQVVLPF  178 (260)
T ss_dssp             SEEEEEECTTCCEEEEEGGGTEEEEECTTCSSCEECCCCSCCSCCEEEECTTCCEEEEEGGGTEEEEECTTTCCEEECCC
T ss_pred             ecccccccccceeEeeccccccccccccccceeeeeeecccCCcceeeecCCCCEeeeccccccccccccccceeeeeec
Confidence            3578999999998877666667777776544332211111122347889999998888788888999987632       


Q ss_pred             -CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeee-eecCCcEEEEEEccCCCEEEEEcCCCcEEEEeC
Q psy10953         86 -HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHT-FKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSY  157 (181)
Q Consensus        86 -~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~  157 (181)
                       .......++++++|+++++....+.|..++......... ...-..+.+++++++|+.+++-..+++|+.++.
T Consensus       179 ~~~~~p~gi~~d~~g~l~vsd~~~~~i~~~~~~~~~~~~~~~~~~~~P~~i~~d~~g~l~vad~~~~rI~~i~~  252 (260)
T d1rwia_         179 TDITAPWGIAVDEAGTVYVTEHNTNQVVKLLAGSTTSTVLPFTGLNTPLAVAVDSDRTVYVADRGNDRVVKLTS  252 (260)
T ss_dssp             SSCCSEEEEEECTTCCEEEEETTTTEEEEECTTCSCCEECCCCSCCCEEEEEECTTCCEEEEEGGGTEEEEECC
T ss_pred             cccCCCccceeeeeeeeeeeecCCCEEEEEeCCCCeEEEEccCCCCCeEEEEEeCCCCEEEEECCCCEEEEEeC
Confidence             234578899999999998888888898887654332111 112245789999999988887677777776554

>d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: All0351-like
domain: Hypothetical protein All0351 homologue
species: Nostoc punctiforme [TaxId: 272131]

Probab=98.71  E-value=2.8e-06  Score=61.49  Aligned_cols=152  Identities=11%  Similarity=0.107  Sum_probs=103.4

Q ss_pred             eccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCC--CcEEEEEec-CCceEEEEEECCCCCEEEEeeCCCcEEEEeCC
Q psy10953          7 INVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVET--GKLEQIFDT-RGKFTLSIAYSTDGHWIASGALDGIINIFDAN   83 (181)
Q Consensus         7 ~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~--~~~~~~~~~-~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~   83 (181)
                      +...+..+.+++|+|||+++++...++.+..++...  +........ .......+.+.++++.+++-+.++.+..+|..
T Consensus        63 ~~~~~~~~~gla~~~dG~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~i~~~~~g~~~v~~~~~~~i~~~~~~  142 (302)
T d2p4oa1          63 HATVEGKVSGLAFTSNGDLVATGWNADSIPVVSLVKSDGTVETLLTLPDAIFLNGITPLSDTQYLTADSYRGAIWLIDVV  142 (302)
T ss_dssp             EEECSSEEEEEEECTTSCEEEEEECTTSCEEEEEECTTSCEEEEEECTTCSCEEEEEESSSSEEEEEETTTTEEEEEETT
T ss_pred             EEcCCCCcceEEEcCCCCeEEEecCCceEEEEEecccccceeeccccCCccccceeEEccCCCEEeeccccccceeeecc
Confidence            334445678999999999988888888888777643  333333332 33445688999999988888888888888765


Q ss_pred             CCC------------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceee---eeecCCcEEEEEEccCCCE
Q psy10953         84 TGH------------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMH---TFKHADQVWCVCVAPDGDK  142 (181)
Q Consensus        84 ~~~------------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~---~~~~~~~v~~~~~sp~g~~  142 (181)
                      .+.                  ......+.++. +.++++.+..+.|+.++........   .........+++++++|+.
T Consensus       143 ~~~~~~~~~~~~~~~~~~~~~~~~~ngi~~~~-~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~pdgia~d~dG~l  221 (302)
T d2p4oa1         143 QPSGSIWLEHPMLARSNSESVFPAANGLKRFG-NFLYVSNTEKMLLLRIPVDSTDKPGEPEIFVEQTNIDDFAFDVEGNL  221 (302)
T ss_dssp             TTEEEEEEECGGGSCSSTTCCSCSEEEEEEET-TEEEEEETTTTEEEEEEBCTTSCBCCCEEEEESCCCSSEEEBTTCCE
T ss_pred             CCcceeEecCCccceeeccCcccccccccccC-CceeeecCCCCeEEeccccccccccccccccCCCCCcceEECCCCCE
Confidence            431                  12345555543 3455666678889888876543222   1223344567999999998


Q ss_pred             EEEEcCCCcEEEEeCCC
Q psy10953        143 FVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       143 l~~~~~d~~v~i~~~~~  159 (181)
                      +++...++.|..++...
T Consensus       222 ~va~~~~~~V~~i~p~G  238 (302)
T d2p4oa1         222 YGATHIYNSVVRIAPDR  238 (302)
T ss_dssp             EEECBTTCCEEEECTTC
T ss_pred             EEEEcCCCcEEEECCCC
Confidence            88777788888887643

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.70  E-value=4e-07  Score=70.34  Aligned_cols=153  Identities=12%  Similarity=0.060  Sum_probs=93.9

Q ss_pred             eeEEEEEEcCCCCEEEEEeC---------CCcEEEEeCCCCcEEEEEecC--CceEEEEEECCCCCEEEEeeCCCcEEEE
Q psy10953         12 VDMWNVVFSPDDKYVLSGSQ---------SGKINLYGVETGKLEQIFDTR--GKFTLSIAYSTDGHWIASGALDGIINIF   80 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~~~~~---------d~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~d~~~l~~~~~d~~v~i~   80 (181)
                      ..+....|||||++++.+.+         .+.+.++|+.+++...+....  ...+....|||||+.+|... ++.+++.
T Consensus        61 ~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~  139 (465)
T d1xfda1          61 LRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIPHGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYC  139 (465)
T ss_dssp             TTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESSSCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEE
T ss_pred             cccceeEECCCCCeEEEEEcccceeEeeccccEEEEEccCCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEE
Confidence            34556789999999877643         467889999988876654322  22233478999999998766 5567777


Q ss_pred             eCCCCC---------ccc-----------------EEEEEEcCCCCEEEEEeCC-CcE----------------------
Q psy10953         81 DANTGH---------SSW-----------------VLSTAFTRDGKFFISASAD-HTV----------------------  111 (181)
Q Consensus        81 d~~~~~---------~~~-----------------v~~~~~s~~~~~l~~~~~d-~~i----------------------  111 (181)
                      +...+.         ...                 -.++.|||||+.|+....| ..+                      
T Consensus       140 ~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~~WSPDgk~iaf~~~D~s~V~~~~~~~~~~~~~p~~~~~~Yp  219 (465)
T d1xfda1         140 AHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAHWWSPDGTRLAYAAINDSRVPIMELPTYTGSIYPTVKPYHYP  219 (465)
T ss_dssp             SSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEEEECTTSSEEEEEEEECTTSCEEEECCCSSSSSCCCEEEECC
T ss_pred             ecCCCceEEEecccCcceeeccccchhhhhhhccccceEEECCCCCeEEEEEecccccceeecccccccccceeeeeecc
Confidence            764321         111                 1467799999999876532 223                      


Q ss_pred             -----------EEEecCCCceeeee-e-----cCC-cEEEEEEccCCCEEEEEcC-C---CcEEEEeCCCCeeEEE
Q psy10953        112 -----------RVWNFARRENMHTF-K-----HAD-QVWCVCVAPDGDKFVSVGE-D---KAVHMYSYKPEEEVEV  165 (181)
Q Consensus       112 -----------~v~d~~~~~~~~~~-~-----~~~-~v~~~~~sp~g~~l~~~~~-d---~~v~i~~~~~~~~~~~  165 (181)
                                 .++|+..+...... .     ... .+..+.|+|+++.++.... +   ..+.+++..+++...+
T Consensus       220 ~~G~~np~~~l~v~d~~~~~~~~~~~~~~~~~~~~~y~~~~~W~~d~~~~~~~~nR~q~~~~i~~~d~~tg~~~~~  295 (465)
T d1xfda1         220 KAGSENPSISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNRAQNVSILTLCDATTGVCTKK  295 (465)
T ss_dssp             BTTSCCCEEEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEETTSCEEEEEEEETTTCCEEEE
T ss_pred             ccCCCCCceeEEEEecCCCcEEEEEeccCcCccccceeeeeEEcCCCeEEEEEEccccccceEEEEcCCCCcEEEE
Confidence                       33333322211110 0     011 2567889999987665442 2   2577888888755443

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.67  E-value=3.5e-06  Score=61.58  Aligned_cols=143  Identities=13%  Similarity=0.200  Sum_probs=95.1

Q ss_pred             EEEEEEcCCCCEEEEEeC---------------CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCC----EE-EEeeC
Q psy10953         14 MWNVVFSPDDKYVLSGSQ---------------SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGH----WI-ASGAL   73 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~---------------d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~----~l-~~~~~   73 (181)
                      ..+++++++|++.++-..               ++.|..++. .++.......-. ....++|++++.    .| ++-+.
T Consensus       119 pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~-dg~~~~~~~~~~-~pNGi~~~~d~d~~~~~lyv~d~~  196 (314)
T d1pjxa_         119 CNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTT-DGQMIQVDTAFQ-FPNGIAVRHMNDGRPYQLIVAETP  196 (314)
T ss_dssp             CCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECT-TSCEEEEEEEES-SEEEEEEEECTTSCEEEEEEEETT
T ss_pred             CcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEee-cCceeEeeCCcc-eeeeeEECCCCCcceeEEEEEeec
Confidence            467899999987776421               223444433 344444332212 234788888764    34 44566


Q ss_pred             CCcEEEEeCCCC---------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeec-CCcEEEEEEc
Q psy10953         74 DGIINIFDANTG---------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKH-ADQVWCVCVA  137 (181)
Q Consensus        74 d~~v~i~d~~~~---------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~-~~~v~~~~~s  137 (181)
                      .+.|..||+...               .......++++++|+++++....+.|++||...+.....+.. ...+.+++|.
T Consensus       197 ~~~i~~~d~~~~g~~~~~~~~~~~~~~~~~~pdGiavD~~GnlyVa~~~~g~I~~~dp~~g~~~~~i~~p~~~~t~~afg  276 (314)
T d1pjxa_         197 TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFDEDNNLLVANWGSSHIEVFGPDGGQPKMRIRCPFEKPSNLHFK  276 (314)
T ss_dssp             TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEBTTCCEEEEEETTTEEEEECTTCBSCSEEEECSSSCEEEEEEC
T ss_pred             ccceEEeeccCccccceeeEEEEccccccccceeeEEecCCcEEEEEcCCCEEEEEeCCCCEEEEEEECCCCCEEEEEEe
Confidence            788888876421               112345688999999988888889999999987776665553 3568899999


Q ss_pred             cCCCE-EEEEcCCCcEEEEeCC
Q psy10953        138 PDGDK-FVSVGEDKAVHMYSYK  158 (181)
Q Consensus       138 p~g~~-l~~~~~d~~v~i~~~~  158 (181)
                      |+++. +++.+.++.|..+++.
T Consensus       277 ~d~~~lyVt~~~~g~i~~~~~~  298 (314)
T d1pjxa_         277 PQTKTIFVTEHENNAVWKFEWQ  298 (314)
T ss_dssp             TTSSEEEEEETTTTEEEEEECS
T ss_pred             CCCCEEEEEECCCCcEEEEECC
Confidence            99975 4666677888888764

>d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme
family: 3-carboxy-cis,cis-mucoante lactonizing enzyme
domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme
species: Neurospora crassa [TaxId: 5141]

Probab=98.61  E-value=1.6e-06  Score=64.71  Aligned_cols=146  Identities=11%  Similarity=0.128  Sum_probs=90.9

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCC-CcEEEEEec-CCceEEEEEECCCCCEEE--Eee-CCCcEEEEeCCC----
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVET-GKLEQIFDT-RGKFTLSIAYSTDGHWIA--SGA-LDGIINIFDANT----   84 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~-~~~~~~~~~-~~~~~~~~~~s~d~~~l~--~~~-~d~~v~i~d~~~----   84 (181)
                      +..++|+|+++.|++++. +.+..|.+.. +........ .+.....+.++++++.+.  +.. ..+.|..+....    
T Consensus        42 ~s~la~s~d~~~ly~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~p~~v~~~~~~~~~~v~~a~~~~~~v~~~~~~~~~~~  120 (365)
T d1jofa_          42 ISWMTFDHERKNIYGAAM-KKWSSFAVKSPTEIVHEASHPIGGHPRANDADTNTRAIFLLAAKQPPYAVYANPFYKFAGY  120 (365)
T ss_dssp             CSEEEECTTSSEEEEEEB-TEEEEEEEEETTEEEEEEEEECCSSGGGGCTTSCCEEEEEEECSSTTCCEEEEEESSSCCE
T ss_pred             CCEEEEcCCCCEEEEEeC-CcEEEEEEeCCCCeEEEeeecCCCCcEEEEECCCCCEEEEEEecCCCCEEEEeEccCCCCc
Confidence            456999999999987764 5677776653 333332221 122223567788887433  222 234444432210    


Q ss_pred             ---------------------CCcccEEEEEEcCCCCEEEEEeC-CCcEEEEecCCCceee---ee---ecCCcEEEEEE
Q psy10953         85 ---------------------GHSSWVLSTAFTRDGKFFISASA-DHTVRVWNFARRENMH---TF---KHADQVWCVCV  136 (181)
Q Consensus        85 ---------------------~~~~~v~~~~~s~~~~~l~~~~~-d~~i~v~d~~~~~~~~---~~---~~~~~v~~~~~  136 (181)
                                           .....+..+.|+|+|+++++++. ...|.+|+......+.   ..   ........++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~q~~~h~h~v~~sPdG~~l~v~d~g~d~v~~~~~~~~g~~~~~~~~~~~~~g~gPr~i~f  200 (365)
T d1jofa_         121 GNVFSVSETGKLEKNVQNYEYQENTGIHGMVFDPTETYLYSADLTANKLWTHRKLASGEVELVGSVDAPDPGDHPRWVAM  200 (365)
T ss_dssp             EEEEEECTTCCEEEEEEEEECCTTCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCEEEEEEEECSSTTCCEEEEEE
T ss_pred             ceeEeeeecceecCcccCcccCCCCcceEEEECCCCCEEEEeeCCCCEEEEEEccCCCceeeccceeecCCCCceEEEEE
Confidence                                 11224678999999998877764 4578888765432221   11   13456889999


Q ss_pred             ccCCCEEEEEc-CCCcEEEEeCCCC
Q psy10953        137 APDGDKFVSVG-EDKAVHMYSYKPE  160 (181)
Q Consensus       137 sp~g~~l~~~~-~d~~v~i~~~~~~  160 (181)
                      +|+++++++.. .++.|.+|++..+
T Consensus       201 ~pdg~~~yv~~e~~~~V~v~~~~~~  225 (365)
T d1jofa_         201 HPTGNYLYALMEAGNRICEYVIDPA  225 (365)
T ss_dssp             CTTSSEEEEEETTTTEEEEEEECTT
T ss_pred             CCCCceEEEeccCCCEEEEEEecCC
Confidence            99999886666 4789999998654

>d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP)
species: Squid (Loligo vulgaris) [TaxId: 6622]

Probab=98.56  E-value=1.1e-05  Score=58.87  Aligned_cols=151  Identities=15%  Similarity=0.150  Sum_probs=95.9

Q ss_pred             ccCeeeEEEEEEcCCCCEEEEEeC-------CCcEEEEeCCCCcEEEEEecC----CceEEEEEECCCCCEEEEeeCCCc
Q psy10953          8 NVGPVDMWNVVFSPDDKYVLSGSQ-------SGKINLYGVETGKLEQIFDTR----GKFTLSIAYSTDGHWIASGALDGI   76 (181)
Q Consensus         8 ~~~~~~~~~~~~s~~g~~l~~~~~-------d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~d~~~l~~~~~d~~   76 (181)
                      ..+-...-.++|+|+|++.++...       +++|..||..+++........    ......+.+++++..++++...+.
T Consensus        14 ~~~~~g~EGpa~d~dG~ly~~~~~~~~~~~~~g~I~r~d~~~~~~~~~~~~~~~~~~g~P~Gl~~~~dg~~l~vad~~~~   93 (314)
T d1pjxa_          14 TEDIPGAEGPVFDKNGDFYIVAPEVEVNGKPAGEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMRLG   93 (314)
T ss_dssp             ECCCTTCEEEEECTTSCEEEEETTCEETTEECCEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETTTE
T ss_pred             ecCCCCCeEeEEeCCCCEEEEECccccccccCCEEEEEECCCCcEEEEECCccccCCCcceeEEEeCCCCEEEEEECCCe
Confidence            333333456899999998776432       467888998887754433211    122457999999988887777677


Q ss_pred             EEEEeCCCCC------------cccEEEEEEcCCCCEEEEEeC---------------CCcEEEEecCCCceeeeeecCC
Q psy10953         77 INIFDANTGH------------SSWVLSTAFTRDGKFFISASA---------------DHTVRVWNFARRENMHTFKHAD  129 (181)
Q Consensus        77 v~i~d~~~~~------------~~~v~~~~~s~~~~~l~~~~~---------------d~~i~v~d~~~~~~~~~~~~~~  129 (181)
                      +..++.....            -...+.++++++|++.++-..               .+.++.++.. ++.......-.
T Consensus        94 i~~~~~~g~~~~~~~~~~~g~~~~~pndl~~d~~G~lyvtd~~~~~~~~~~~~~~~~~~G~v~~~~~d-g~~~~~~~~~~  172 (314)
T d1pjxa_          94 LLVVQTDGTFEEIAKKDSEGRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTAFQ  172 (314)
T ss_dssp             EEEEETTSCEEECCSBCTTSCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEEES
T ss_pred             EEEEeCCCcEEEEEeccccccccCCCcEEEECCCCCEEEecCccCcccccccceeccCCceEEEEeec-CceeEeeCCcc
Confidence            8888875321            123577899999998887432               2345444432 22222222333


Q ss_pred             cEEEEEEccCCC-----EEEEEcCCCcEEEEeCCC
Q psy10953        130 QVWCVCVAPDGD-----KFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       130 ~v~~~~~sp~g~-----~l~~~~~d~~v~i~~~~~  159 (181)
                      ..+.++|+|+++     .+++-+..+.|..|++..
T Consensus       173 ~pNGi~~~~d~d~~~~~lyv~d~~~~~i~~~d~~~  207 (314)
T d1pjxa_         173 FPNGIAVRHMNDGRPYQLIVAETPTKKLWSYDIKG  207 (314)
T ss_dssp             SEEEEEEEECTTSCEEEEEEEETTTTEEEEEEEEE
T ss_pred             eeeeeEECCCCCcceeEEEEEeecccceEEeeccC
Confidence            467899999875     445556678888888654

>d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: DPP6 N-terminal domain-like
family: DPP6 N-terminal domain-like
domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.7e-07  Score=70.53  Aligned_cols=140  Identities=13%  Similarity=0.226  Sum_probs=93.6

Q ss_pred             EEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC---ceEEEEEECCCCCEEEEee---------CCCcEEEEeCC
Q psy10953         16 NVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG---KFTLSIAYSTDGHWIASGA---------LDGIINIFDAN   83 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~---~~~~~~~~s~d~~~l~~~~---------~d~~v~i~d~~   83 (181)
                      ...|.+++.++. -..++.|.+||+.+++...++....   ..+....+|||+++++...         ..+...+||+.
T Consensus        21 ~~~W~~~~~~~~-~~~~g~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~SpD~~~vl~~~~~~~~~r~s~~~~~~i~d~~   99 (465)
T d1xfda1          21 EAKWISDTEFIY-REQKGTVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEPIYQHSYTGYYVLSKIP   99 (465)
T ss_dssp             CCCBSSSSCBCC-CCSSSCEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCCCSSSCCCSEEEEEESS
T ss_pred             CCEEeCCCcEEE-EeCCCcEEEEECCCCCEEEEEcCccccccccceeEECCCCCeEEEEEcccceeEeeccccEEEEEcc
Confidence            456888887654 4567899999999887655554321   2234678999999887653         35678899987


Q ss_pred             CCCc----------ccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee--cCC-----------------cEEEE
Q psy10953         84 TGHS----------SWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK--HAD-----------------QVWCV  134 (181)
Q Consensus        84 ~~~~----------~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~--~~~-----------------~v~~~  134 (181)
                      ++..          ..+....|||+|+.+|-.. ++.+++.+...+.......  ..+                 .-..+
T Consensus       100 ~~~~~~l~~~~~~~~~l~~~~wSPDG~~iafv~-~~nl~~~~~~~~~~~~lt~~g~~~~i~nG~~d~vyeee~~~~~~a~  178 (465)
T d1xfda1         100 HGDPQSLDPPEVSNAKLQYAGWGPKGQQLIFIF-ENNIYYCAHVGKQAIRVVSTGKEGVIYNGLSDWLYEEEILKTHIAH  178 (465)
T ss_dssp             SCCCEECCCTTCCSCCCSBCCBCSSTTCEEEEE-TTEEEEESSSSSCCEEEECCCBTTTEEEEECCHHHHHTTSSSSEEE
T ss_pred             CCceeeccCccCCccccceeeeccCCceEEEEe-cceEEEEecCCCceEEEecccCcceeeccccchhhhhhhccccceE
Confidence            5432          2334578999999888766 5689888876654332221  111                 11467


Q ss_pred             EEccCCCEEEEEcC-CCcEEEEeC
Q psy10953        135 CVAPDGDKFVSVGE-DKAVHMYSY  157 (181)
Q Consensus       135 ~~sp~g~~l~~~~~-d~~v~i~~~  157 (181)
                      .|||||++|+.... +..|..+.+
T Consensus       179 ~WSPDgk~iaf~~~D~s~V~~~~~  202 (465)
T d1xfda1         179 WWSPDGTRLAYAAINDSRVPIMEL  202 (465)
T ss_dssp             EECTTSSEEEEEEEECTTSCEEEE
T ss_pred             EECCCCCeEEEEEecccccceeec
Confidence            79999999988764 345555543

>d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Lactonase Drp35
species: Staphylococcus aureus [TaxId: 1280]

Probab=98.44  E-value=0.0001  Score=53.58  Aligned_cols=151  Identities=11%  Similarity=0.146  Sum_probs=96.5

Q ss_pred             eEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcEEEEEecC--CceEEEEEECCCCCEEEEeeC------CCcEEEE
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS----GKINLYGVETGKLEQIFDTR--GKFTLSIAYSTDGHWIASGAL------DGIINIF   80 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~--~~~~~~~~~s~d~~~l~~~~~------d~~v~i~   80 (181)
                      ....++|++||+++++...+    +.+...+..++.........  ......+.+.++|+..++-..      .+.+..+
T Consensus        83 ~p~gla~~~dG~l~va~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~nd~~~d~~G~l~vtd~~~~~~~~~g~v~~~  162 (319)
T d2dg1a1          83 NPAAIKIHKDGRLFVCYLGDFKSTGGIFAATENGDNLQDIIEDLSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYV  162 (319)
T ss_dssp             SEEEEEECTTSCEEEEECTTSSSCCEEEEECTTSCSCEEEECSSSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEE
T ss_pred             CeeEEEECCCCCEEEEecCCCccceeEEEEcCCCceeeeeccCCCcccCCcceeEEeccceeecccccccccCcceeEEE
Confidence            35689999999988765432    33555555665555444321  223457899999986665322      2335555


Q ss_pred             eCCCCCc-------ccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCc-eee----ee----ecCCcEEEEEEccCCCEE
Q psy10953         81 DANTGHS-------SWVLSTAFTRDGKFF-ISASADHTVRVWNFARRE-NMH----TF----KHADQVWCVCVAPDGDKF  143 (181)
Q Consensus        81 d~~~~~~-------~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~-~~~----~~----~~~~~v~~~~~sp~g~~l  143 (181)
                      +......       ...+.++|+|+++.| ++-+..+.|+.|++.... ...    ..    ......-.+++.++|+..
T Consensus       163 ~~dg~~~~~~~~~~~~pnGia~s~dg~~lyvad~~~~~I~~~d~~~~g~~~~~~~~~~~~~~~~~~~PdGl~vD~~G~l~  242 (319)
T d2dg1a1         163 SPDFRTVTPIIQNISVANGIALSTDEKVLWVTETTANRLHRIALEDDGVTIQPFGATIPYYFTGHEGPDSCCIDSDDNLY  242 (319)
T ss_dssp             CTTSCCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSSSEEEEEEEEEEECCSSSEEEEEEEBTTCCEE
T ss_pred             ecccceeEEEeeccceeeeeeeccccceEEEecccCCceEEEEEcCCCceeccccceeeeccCCccceeeeeEcCCCCEE
Confidence            5543321       234679999999854 565677899999986421 111    11    112346689999999988


Q ss_pred             EEEcCCCcEEEEeCCCCeeEE
Q psy10953        144 VSVGEDKAVHMYSYKPEEEVE  164 (181)
Q Consensus       144 ~~~~~d~~v~i~~~~~~~~~~  164 (181)
                      ++....+.|.+|+- .++.+.
T Consensus       243 Va~~~~g~V~~~~p-~G~~l~  262 (319)
T d2dg1a1         243 VAMYGQGRVLVFNK-RGYPIG  262 (319)
T ss_dssp             EEEETTTEEEEECT-TSCEEE
T ss_pred             EEEcCCCEEEEECC-CCcEEE
Confidence            88888899999996 465543

>d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: NHL repeat
family: NHL repeat
domain: Brain tumor cg10719-pa
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=98.39  E-value=0.00011  Score=52.24  Aligned_cols=144  Identities=15%  Similarity=0.290  Sum_probs=99.6

Q ss_pred             EEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCC------ceEEEEEECCC-CCEEEE-eeCCCcEEEEeCCCC
Q psy10953         14 MWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRG------KFTLSIAYSTD-GHWIAS-GALDGIINIFDANTG   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~------~~~~~~~~s~d-~~~l~~-~~~d~~v~i~d~~~~   85 (181)
                      ...++++|+|+++++-...+.|++||.+ ++.+..+....      .....+.+.++ +..+++ ...++.+..++....
T Consensus        25 P~gvavd~dg~i~VaD~~n~rI~v~d~~-G~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~  103 (279)
T d1q7fa_          25 PSGVAVNAQNDIIVADTNNHRIQIFDKE-GRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERSPTHQIQIYNQYGQ  103 (279)
T ss_dssp             EEEEEECTTCCEEEEEGGGTEEEEECTT-SCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECGGGCEEEEECTTSC
T ss_pred             ccEEEEcCCCCEEEEECCCCEEEEEeCC-CCEEEEecccCCCcccccccccccccccccccceeccCCcccccccccccc
Confidence            5789999999988887778899999965 66666553221      11234554444 344443 344557777765422


Q ss_pred             --------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEE
Q psy10953         86 --------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus        86 --------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i  154 (181)
                              .......++++++|+++++....+.+.+++.. ++.+..+.   +......+++.++|+.+++....+.|++
T Consensus       104 ~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~-g~~~~~~g~~~~~~~~~~i~~d~~g~i~v~d~~~~~V~~  182 (279)
T d1q7fa_         104 FVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN-GNVLHKFGCSKHLEFPNGVVVNDKQEIFISDNRAHCVKV  182 (279)
T ss_dssp             EEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT-SCEEEEEECTTTCSSEEEEEECSSSEEEEEEGGGTEEEE
T ss_pred             ceeecCCCcccccceeccccCCcEEEEeeccceeeEeccC-CceeecccccccccccceeeeccceeEEeeeccccceee
Confidence                    23456788999999988887777888888764 34444442   3456788999999998888888889999


Q ss_pred             EeCCC
Q psy10953        155 YSYKP  159 (181)
Q Consensus       155 ~~~~~  159 (181)
                      |+...
T Consensus       183 ~d~~G  187 (279)
T d1q7fa_         183 FNYEG  187 (279)
T ss_dssp             EETTC
T ss_pred             eecCC
Confidence            98753

>d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: TolB, C-terminal domain
family: TolB, C-terminal domain
domain: TolB, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=98.35  E-value=5.2e-05  Score=53.01  Aligned_cols=125  Identities=18%  Similarity=0.184  Sum_probs=78.8

Q ss_pred             EEEEEEcCCCCEEEEE-eCCC--cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCC---cEEEEeCCCC--
Q psy10953         14 MWNVVFSPDDKYVLSG-SQSG--KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDG---IINIFDANTG--   85 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~-~~d~--~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~---~v~i~d~~~~--   85 (181)
                      .....++++++.+... ..++  .|...++.++........ ........|+|+++.++..+.++   .+.+.+...+  
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~spdg~~~~~~~~~~~~~~i~~~~~~~~~~  207 (269)
T d2hqsa1         129 NTEPTWFPDSQNLAFTSDQAGRPQVYKVNINGGAPQRITWE-GSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV  207 (269)
T ss_dssp             EEEEEECTTSSEEEEEECTTSSCEEEEEETTSSCCEECCCS-SSEEEEEEECTTSSEEEEEEECSSCEEEEEEETTTCCE
T ss_pred             ccccccccccccceecccccCCceEeeeecccccceeeecc-cccccccccccccceeEEEeecCCceeeeEeecccccc
Confidence            3455677777766544 3444  455666666655444333 33345689999999988765543   4444555432  


Q ss_pred             ----CcccEEEEEEcCCCCEEEEEeC---CCcEEEEecCCCceeeeeecCCcEEEEEEccC
Q psy10953         86 ----HSSWVLSTAFTRDGKFFISASA---DHTVRVWNFARRENMHTFKHADQVWCVCVAPD  139 (181)
Q Consensus        86 ----~~~~v~~~~~s~~~~~l~~~~~---d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~  139 (181)
                          .........|||||+.|+..+.   ...++++++..+...........+...+|||-
T Consensus       208 ~~~~~~~~~~~p~~SPDG~~i~f~s~~~~~~~l~~~~~dg~~~~~lt~~~g~~~~p~WSP~  268 (269)
T d2hqsa1         208 QVLSSTFLDETPSLAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDGQVKFPAWSPY  268 (269)
T ss_dssp             EECCCSSSCEEEEECTTSSEEEEEEEETTEEEEEEEETTSCCEEECCCSSSEEEEEEECCC
T ss_pred             eEeecCccccceEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEEEeCCCCcEEeEEeCCC
Confidence                2334567789999998775543   34688999987665444445556778889883

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=98.23  E-value=0.00028  Score=50.60  Aligned_cols=132  Identities=14%  Similarity=0.186  Sum_probs=92.4

Q ss_pred             eEEEEEEcCCCCEEEEEeCC----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCC--
Q psy10953         13 DMWNVVFSPDDKYVLSGSQS----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTG--   85 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~--   85 (181)
                      .+.++.+.|+|++.++....    +.-.+|.+..++.......... ...+.|+++++.++.. +..+.|..|++...  
T Consensus       104 ~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~~~g~~~~~~~~~~~-~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~  182 (295)
T d2ghsa1         104 RSNDGRMHPSGALWIGTMGRKAETGAGSIYHVAKGKVTKLFADISI-PNSICFSPDGTTGYFVDTKVNRLMRVPLDARTG  182 (295)
T ss_dssp             EEEEEEECTTSCEEEEEEETTCCTTCEEEEEEETTEEEEEEEEESS-EEEEEECTTSCEEEEEETTTCEEEEEEBCTTTC
T ss_pred             cceeeEECCCCCEEEEeccccccccceeEeeecCCcEEEEeeccCC-cceeeecCCCceEEEeecccceeeEeeeccccc
Confidence            46788999999976654322    3456677777776655543333 3579999999876654 55778888876421  


Q ss_pred             --------------CcccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecC-CcEEEEEEc-cCCCEEEEE
Q psy10953         86 --------------HSSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFKHA-DQVWCVCVA-PDGDKFVSV  146 (181)
Q Consensus        86 --------------~~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~-~~v~~~~~s-p~g~~l~~~  146 (181)
                                    .......++++++|++.++....+.|..||. .++.+..+..+ ..++++||- ||.+.|+..
T Consensus       183 ~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva~~~~g~V~~~dp-~G~~~~~i~lP~~~~T~~~FGG~d~~~LyvT  258 (295)
T d2ghsa1         183 LPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNARWGEGAVDRYDT-DGNHIARYEVPGKQTTCPAFIGPDASRLLVT  258 (295)
T ss_dssp             CBSSCCEEEEECTTSSSEEEEEEECTTSCEEEEEETTTEEEEECT-TCCEEEEEECSCSBEEEEEEESTTSCEEEEE
T ss_pred             ccccceEEEeccCcccccccceEEcCCCCEEeeeeCCCceEEecC-CCcEeeEecCCCCceEEEEEeCCCCCEEEEE
Confidence                          1233567889999998888878889999995 56677777654 468999995 777766544

>d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: SGL-like
domain: Regucalcin
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.85  E-value=0.002  Score=45.96  Aligned_cols=146  Identities=15%  Similarity=0.089  Sum_probs=95.7

Q ss_pred             eeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC----CceEEEEEECCCCCEEEEeeC----CCcEEEEeC
Q psy10953         11 PVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR----GKFTLSIAYSTDGHWIASGAL----DGIINIFDA   82 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~----~~~~~~~~~s~d~~~l~~~~~----d~~v~i~d~   82 (181)
                      +..+.++++.++|++++++ . .-+..+|..+++........    ......+.+.|+|+..++...    .+.-.+|.+
T Consensus        58 ~~~~~~i~~~~dg~l~va~-~-~gl~~~d~~tg~~~~l~~~~~~~~~~~~nd~~vd~~G~iw~~~~~~~~~~~~g~l~~~  135 (295)
T d2ghsa1          58 PFMGSALAKISDSKQLIAS-D-DGLFLRDTATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHV  135 (295)
T ss_dssp             SSCEEEEEEEETTEEEEEE-T-TEEEEEETTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEE
T ss_pred             CCCcEEEEEecCCCEEEEE-e-CccEEeecccceeeEEeeeecCCCcccceeeEECCCCCEEEEeccccccccceeEeee
Confidence            3446789999998877654 4 46888999999876654432    223567889999987665432    223445544


Q ss_pred             CCCC-------cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCc------eeeeee---cCCcEEEEEEccCCCEEEE
Q psy10953         83 NTGH-------SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRE------NMHTFK---HADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        83 ~~~~-------~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~------~~~~~~---~~~~v~~~~~sp~g~~l~~  145 (181)
                      ..+.       ....+.++|+++++.+ ++-+..+.|+.|++....      ......   ......++++.++|+..++
T Consensus       136 ~~g~~~~~~~~~~~~Ng~~~s~d~~~l~~~dt~~~~I~~~~~d~~~~~~~~~~~~~~~~~~~~g~pdG~~vD~~GnlWva  215 (295)
T d2ghsa1         136 AKGKVTKLFADISIPNSICFSPDGTTGYFVDTKVNRLMRVPLDARTGLPTGKAEVFIDSTGIKGGMDGSVCDAEGHIWNA  215 (295)
T ss_dssp             ETTEEEEEEEEESSEEEEEECTTSCEEEEEETTTCEEEEEEBCTTTCCBSSCCEEEEECTTSSSEEEEEEECTTSCEEEE
T ss_pred             cCCcEEEEeeccCCcceeeecCCCceEEEeecccceeeEeeecccccccccceEEEeccCcccccccceEEcCCCCEEee
Confidence            3332       1234678999999854 555567889999874311      111111   2345778999999988777


Q ss_pred             EcCCCcEEEEeCC
Q psy10953        146 VGEDKAVHMYSYK  158 (181)
Q Consensus       146 ~~~d~~v~i~~~~  158 (181)
                      .-..+.|..|+-.
T Consensus       216 ~~~~g~V~~~dp~  228 (295)
T d2ghsa1         216 RWGEGAVDRYDTD  228 (295)
T ss_dssp             EETTTEEEEECTT
T ss_pred             eeCCCceEEecCC
Confidence            6667789888854

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.73  E-value=0.0036  Score=47.00  Aligned_cols=149  Identities=14%  Similarity=0.200  Sum_probs=93.6

Q ss_pred             CeeeEEEEEEcC---CCCEEEEEe-CCCcEEEEeCCCCcEEEEEecC-CceEEEEEECCC--CCEEEEeeCC--------
Q psy10953         10 GPVDMWNVVFSP---DDKYVLSGS-QSGKINLYGVETGKLEQIFDTR-GKFTLSIAYSTD--GHWIASGALD--------   74 (181)
Q Consensus        10 ~~~~~~~~~~s~---~g~~l~~~~-~d~~i~~~d~~~~~~~~~~~~~-~~~~~~~~~s~d--~~~l~~~~~d--------   74 (181)
                      +-..+-.+++..   ||++++... .+.+|-+.|+++.+..+.+... ....-.++..++  -.+++.++.+        
T Consensus        83 GD~HHP~~S~TdGtyDGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~~p~T~YV~~~~e~~vP~pndg  162 (459)
T d1fwxa2          83 GDLHHVHMSFTEGKYDGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQKWPRSNYVFCNGEDETPLVNDG  162 (459)
T ss_dssp             CCBCCEEEEEETTEEEEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECCSSBCSEEEEEECSCEESSCSS
T ss_pred             CCcCCCcccccCCccceeEEEEEcCCCceEEEEECcceeeeEEEecCCCCCCceeecccCCCeEEEEccCccccccCCCC
Confidence            344455677754   899987665 5788999999999887766542 222335555554  4556655542        


Q ss_pred             ----------CcEEEEeCCCCCc-------ccEEEEEEcCCCCEEEEEeCCC---------------cEEEEe-------
Q psy10953         75 ----------GIINIFDANTGHS-------SWVLSTAFTRDGKFFISASADH---------------TVRVWN-------  115 (181)
Q Consensus        75 ----------~~v~i~d~~~~~~-------~~v~~~~~s~~~~~l~~~~~d~---------------~i~v~d-------  115 (181)
                                +.+...|..+...       .....+.++|+|+++++.+.+.               .+.++|       
T Consensus       163 ~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~e~D~i~V~n~~rie~a  242 (459)
T d1fwxa2         163 TNMEDVANYVNVFTAVDADKWEVAWQVLVSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAAEMDHIVVFNIAEIEKA  242 (459)
T ss_dssp             SSTTCGG-EEEEEEEEETTTTEEEEEEEESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCCSEEEEEEEEHHHHHHH
T ss_pred             ccccchhhcceEEEEEecCCceEEEEeeeCCChhccccCCCCCEEEEEeccccCCcchhhcccccceEEEEechHHhHHh
Confidence                      2355667654321       1123578999999888776431               234444       


Q ss_pred             ----------------cCCC---ceeeeeecCCcEEEEEEccCCCEEEEEcC-CCcEEEEeCC
Q psy10953        116 ----------------FARR---ENMHTFKHADQVWCVCVAPDGDKFVSVGE-DKAVHMYSYK  158 (181)
Q Consensus       116 ----------------~~~~---~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d~~v~i~~~~  158 (181)
                                      .+..   ..+..++-+...+++.++|||+++++++. +..+.++|+.
T Consensus       243 v~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~VaGKLs~tVSViD~~  305 (459)
T d1fwxa2         243 IAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVAGKLSPTVTVLDVT  305 (459)
T ss_dssp             HHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEECTTSSBEEEEEGG
T ss_pred             hhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEeCCcCCcEEEEEeh
Confidence                            2221   12223344455678999999999877774 8899999985

>d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Tricorn protease N-terminal domain
family: Tricorn protease N-terminal domain
domain: Tricorn protease N-terminal domain
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=97.52  E-value=0.00031  Score=48.95  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=53.3

Q ss_pred             EEcCC--CCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcC-C-----CcEEEEeCCCCeeEEE
Q psy10953         94 AFTRD--GKFFISASADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGE-D-----KAVHMYSYKPEEEVEV  165 (181)
Q Consensus        94 ~~s~~--~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~-d-----~~v~i~~~~~~~~~~~  165 (181)
                      .++|+  |+.++..+ ++.|.++|+..++..........+...+|||||+.|+-... +     ..|.+++...++...+
T Consensus         5 ~~sPdi~G~~v~f~~-~~dl~~~d~~~g~~~~Lt~~~~~~~~p~~SPDG~~iaf~~~~~~~~~~~~i~~~~~~~g~~~~l   83 (281)
T d1k32a2           5 LLNPDIHGDRIIFVC-CDDLWEHDLKSGSTRKIVSNLGVINNARFFPDGRKIAIRVMRGSSLNTADLYFYNGENGEIKRI   83 (281)
T ss_dssp             CEEEEEETTEEEEEE-TTEEEEEETTTCCEEEEECSSSEEEEEEECTTSSEEEEEEEESTTCCEEEEEEEETTTTEEEEC
T ss_pred             ccCCCCCCCEEEEEe-CCcEEEEECCCCCEEEEecCCCcccCEEECCCCCEEEEEEeeCCCCCceEEEEEEecCCceEEe
Confidence            35788  99887665 46799999998876554456677889999999999886542 1     2477777777776665


Q ss_pred             cCC
Q psy10953        166 NGG  168 (181)
Q Consensus       166 ~~~  168 (181)
                      ...
T Consensus        84 t~~   86 (281)
T d1k32a2          84 TYF   86 (281)
T ss_dssp             CCC
T ss_pred             eec
Confidence            443

>d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nitrous oxide reductase, N-terminal domain
family: Nitrous oxide reductase, N-terminal domain
domain: Nitrous oxide reductase, N-terminal domain
species: Paracoccus denitrificans [TaxId: 266]

Probab=97.14  E-value=0.028  Score=42.08  Aligned_cols=144  Identities=14%  Similarity=0.157  Sum_probs=91.2

Q ss_pred             EEEEEEc--CCCCEEEEEeCCC------------------cEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC
Q psy10953         14 MWNVVFS--PDDKYVLSGSQSG------------------KINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL   73 (181)
Q Consensus        14 ~~~~~~s--~~g~~l~~~~~d~------------------~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~   73 (181)
                      ...++..  |+-.+++.++.+.                  .+.++|..+.+....+...+. ...+.+++||+++++.+.
T Consensus       134 ~HG~r~~~~p~T~YV~~~~e~~vP~pndg~~l~d~~~y~~~~t~ID~~tm~V~~QV~V~g~-ld~~~~s~dGK~af~Tsy  212 (459)
T d1fwxa2         134 IHGLRPQKWPRSNYVFCNGEDETPLVNDGTNMEDVANYVNVFTAVDADKWEVAWQVLVSGN-LDNCDADYEGKWAFSTSY  212 (459)
T ss_dssp             EEEEEECCSSBCSEEEEEECSCEESSCSSSSTTCGG-EEEEEEEEETTTTEEEEEEEESSC-CCCEEECSSSSEEEEEES
T ss_pred             CceeecccCCCeEEEEccCccccccCCCCccccchhhcceEEEEEecCCceEEEEeeeCCC-hhccccCCCCCEEEEEec
Confidence            4455554  4555676665522                  366788888887765554443 336889999999988764


Q ss_pred             CC--------------------------------------cEEEEeCCCCCc----------ccEEEEEEcCCCCEEEEE
Q psy10953         74 DG--------------------------------------IINIFDANTGHS----------SWVLSTAFTRDGKFFISA  105 (181)
Q Consensus        74 d~--------------------------------------~v~i~d~~~~~~----------~~v~~~~~s~~~~~l~~~  105 (181)
                      +.                                      -+.+-|.+....          .....+.++|||++++++
T Consensus       213 NSE~g~~l~e~ta~e~D~i~V~n~~rie~av~~Gk~~eingV~VVD~~~~~~~~v~~yIPVpKsPHGV~vSPDGKyi~Va  292 (459)
T d1fwxa2         213 NSEKGMTLPEMTAAEMDHIVVFNIAEIEKAIAAGDYQELNGVKVVDGRKEASSLFTRYIPIANNPHGCNMAPDKKHLCVA  292 (459)
T ss_dssp             CTTCCSSHHHHTCCSEEEEEEEEHHHHHHHHHHTCSEEETTEEEEECSGG--CSSEEEEEEESSCCCEEECTTSSEEEEE
T ss_pred             cccCCcchhhcccccceEEEEechHHhHHhhhcCCcEEeCCceeecccccCCcceeEEEecCCCCCceEECCCCCEEEEe
Confidence            31                                      122223221100          122357899999988777


Q ss_pred             e-CCCcEEEEecCCCc------------eeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953        106 S-ADHTVRVWNFARRE------------NMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus       106 ~-~d~~i~v~d~~~~~------------~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                      + .+.++.++|++...            ...+....-....-+|+.+|....+.-.|..|..|++.
T Consensus       293 GKLs~tVSViD~~Ki~~~~~~~~~~~~~~~~e~elglgPLht~fd~~g~aytslfids~v~kw~~~  358 (459)
T d1fwxa2         293 GKLSPTVTVLDVTRFDAVFYENADPRSAVVAEPELGLGPLHTAFDGRGNAYTSLFLDSQVVKWNIE  358 (459)
T ss_dssp             CTTSSBEEEEEGGGHHHHHHSCC-GGGGEEECCBCCSCEEEEEECTTSEEEEEETTTTEEEEEEHH
T ss_pred             CCcCCcEEEEEehhhhhhhcccCCccccEEeecccCcCccccccCCCceEEEEeeccceEEEEecc
Confidence            7 47899999986311            11111223345677899988766777789999999973

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=97.07  E-value=0.034  Score=41.85  Aligned_cols=61  Identities=21%  Similarity=0.313  Sum_probs=42.7

Q ss_pred             eeeeccCeeeEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecC--------CceEEEEEECCC
Q psy10953          4 ISKINVGPVDMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTR--------GKFTLSIAYSTD   64 (181)
Q Consensus         4 ~~~~~~~~~~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~--------~~~~~~~~~s~d   64 (181)
                      +..+..+....++|+|.|||+++++-=..|+|++++..+++........        ..-...++++|+
T Consensus        19 ~~~ia~~L~~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          19 KKVILSNLNKPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             EEEEECCCSSEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             EEEEECCCCCceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            4445555667899999999998877655799999988877665433211        122357899985

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=96.98  E-value=0.039  Score=41.07  Aligned_cols=90  Identities=21%  Similarity=0.282  Sum_probs=58.9

Q ss_pred             EEEEEEcCCCCEEEEEe-CC----CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCC--------------
Q psy10953         14 MWNVVFSPDDKYVLSGS-QS----GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALD--------------   74 (181)
Q Consensus        14 ~~~~~~s~~g~~l~~~~-~d----~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d--------------   74 (181)
                      +...++||||++++.+- ..    .+++++|+.+++.+........ ...+.|++|++.|+....+              
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~-~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~  205 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVK-FSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTN  205 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEEC-SCCEEECTTSSEEEEEECCCCSSCCSSSCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceeccccccccc-ccceEEcCCCCEEEEEEeccccCcccccccccC
Confidence            45678899999998432 22    3699999999997643211111 1257899999988765432              


Q ss_pred             --CcEEEEeCCCC------------CcccEEEEEEcCCCCEEEE
Q psy10953         75 --GIINIFDANTG------------HSSWVLSTAFTRDGKFFIS  104 (181)
Q Consensus        75 --~~v~i~d~~~~------------~~~~v~~~~~s~~~~~l~~  104 (181)
                        ..|..+.+.+.            .......+..++++++++.
T Consensus       206 ~~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i  249 (430)
T d1qfma1         206 LHQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLL  249 (430)
T ss_dssp             CCCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEE
T ss_pred             CcceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeE
Confidence              25666666432            1234667778999997653

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.87  E-value=0.036  Score=40.00  Aligned_cols=144  Identities=14%  Similarity=0.161  Sum_probs=85.6

Q ss_pred             EEEEcCCCCEEEEEeCCC-----------cEEEEeCCCCcEEEEE--e-cCCceEEEEEECCCCCEEEEeeCC-CcEEEE
Q psy10953         16 NVVFSPDDKYVLSGSQSG-----------KINLYGVETGKLEQIF--D-TRGKFTLSIAYSTDGHWIASGALD-GIINIF   80 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~d~-----------~i~~~d~~~~~~~~~~--~-~~~~~~~~~~~s~d~~~l~~~~~d-~~v~i~   80 (181)
                      ......+|+.++.|+.+.           .+.+||..+++....-  . .+..+.....+.++|+.++.|+.+ ..+.+|
T Consensus        24 ~a~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~y  103 (387)
T d1k3ia3          24 AAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLY  103 (387)
T ss_dssp             EEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEE
T ss_pred             EEEEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEe
Confidence            344566889888887431           3678999988754321  1 122223356788999999887654 689999


Q ss_pred             eCCCCC---------cccEEEEEEcCCCCEEEEEeCC------CcEEEEecCCCceee--eee--------c-----CCc
Q psy10953         81 DANTGH---------SSWVLSTAFTRDGKFFISASAD------HTVRVWNFARRENMH--TFK--------H-----ADQ  130 (181)
Q Consensus        81 d~~~~~---------~~~v~~~~~s~~~~~l~~~~~d------~~i~v~d~~~~~~~~--~~~--------~-----~~~  130 (181)
                      |..+..         ...-..++..+||+.++.++.+      ..+.+||..+.+=..  ...        +     .+.
T Consensus       104 d~~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~  183 (387)
T d1k3ia3         104 DSSSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDN  183 (387)
T ss_dssp             EGGGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTC
T ss_pred             cCccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCceeecCCCcccccccccccceeeccc
Confidence            975421         1112345667899988888753      368999987643110  000        0     001


Q ss_pred             EEEEEEccCCCEEEEEcCCCcEEEEeCCC
Q psy10953        131 VWCVCVAPDGDKFVSVGEDKAVHMYSYKP  159 (181)
Q Consensus       131 v~~~~~sp~g~~l~~~~~d~~v~i~~~~~  159 (181)
                      ...+...++|+.++.++....+..++...
T Consensus       184 ~~~~~~~~~G~~~~~g~~~~~~~~~~~~~  212 (387)
T d1k3ia3         184 HAWLFGWKKGSVFQAGPSTAMNWYYTSGS  212 (387)
T ss_dssp             SCCEEECGGGCEEECCSSSEEEEEECSTT
T ss_pred             eeEEEEeCCCCEEEecCcCCcEEecCccc
Confidence            11233345677777666666666655443

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=96.83  E-value=0.047  Score=39.55  Aligned_cols=145  Identities=13%  Similarity=0.116  Sum_probs=85.2

Q ss_pred             EEEEcCCCCEEEEEeC------------CCcEEEEeCCCCcEE-EEEecC-C------ceEEEE--EECCCCCE-EEEe-
Q psy10953         16 NVVFSPDDKYVLSGSQ------------SGKINLYGVETGKLE-QIFDTR-G------KFTLSI--AYSTDGHW-IASG-   71 (181)
Q Consensus        16 ~~~~s~~g~~l~~~~~------------d~~i~~~d~~~~~~~-~~~~~~-~------~~~~~~--~~s~d~~~-l~~~-   71 (181)
                      +|++.|+|..+++++.            .|.|.++|+.+.+.. ..+... +      -....+  .-.++|+. |++. 
T Consensus        39 Di~~~~dg~~~issg~~~~~~~~~~~~~~G~i~~~dl~~~~~~~~~l~~~~~~~~~~~f~PhGi~l~~~~dg~~~L~vvn  118 (340)
T d1v04a_          39 DLEILPNGLAFISSGLKYPGIMSFDPDKSGKILLMDLNEKEPAVSELEIIGNTLDISSFNPHGISTFIDDDNTVYLLVVN  118 (340)
T ss_dssp             EEEECTTSEEEEEECCCC--------CCCCEEEEEETTSSSCCEEECEEECSSSCGGGCCEEEEEEEECTTCCEEEEEEE
T ss_pred             eEEECCCCcEEEEecCccCCCCCCCCCCCCeEEEEecCCCCCcceEEEecCCCCCCcceeccceeEEEcCCCcEEEEEEe
Confidence            5788899988876642            388999998755432 111111 0      011233  33566763 3333 


Q ss_pred             --eCCCcEEEEeCCCC-------------CcccEEEEEEcCCCCEEEEEeCC---------------CcEEEEecCCCce
Q psy10953         72 --ALDGIINIFDANTG-------------HSSWVLSTAFTRDGKFFISASAD---------------HTVRVWNFARREN  121 (181)
Q Consensus        72 --~~d~~v~i~d~~~~-------------~~~~v~~~~~s~~~~~l~~~~~d---------------~~i~v~d~~~~~~  121 (181)
                        ....+|-++++...             .....+++++..+|.+++|-...               ....+|....+..
T Consensus       119 H~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~~g~v~~~~~~~~  198 (340)
T d1v04a_         119 HPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLAWSFVTYYSPNDV  198 (340)
T ss_dssp             CSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCCCEEEEEECSSCE
T ss_pred             ccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCCceeEEEEcCCce
Confidence              23456777776422             22356788888899988884221               1233333333332


Q ss_pred             eeeeecCCcEEEEEEccCCCEEEEEc-CCCcEEEEeCCCC
Q psy10953        122 MHTFKHADQVWCVCVAPDGDKFVSVG-EDKAVHMYSYKPE  160 (181)
Q Consensus       122 ~~~~~~~~~v~~~~~sp~g~~l~~~~-~d~~v~i~~~~~~  160 (181)
                      ......-...++++++||+++++.+. ..++|+.|++...
T Consensus       199 ~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~  238 (340)
T d1v04a_         199 RVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHAN  238 (340)
T ss_dssp             EEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTT
T ss_pred             EEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCC
Confidence            22223334688999999999876655 4678999998654

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=96.71  E-value=0.047  Score=42.37  Aligned_cols=55  Identities=13%  Similarity=0.117  Sum_probs=38.8

Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      |.+.-+|+.+++...+.......++-.++-.+..+++++.|+.++-+|.++|+++
T Consensus       444 G~l~AiD~~TG~~~W~~~~~~~~~~g~l~TagglVf~G~~dg~l~A~Da~tGe~l  498 (571)
T d2ad6a1         444 GQIRAFDLTTGKAKWTKWEKFAAWGGTLYTKGGLVWYATLDGYLKALDNKDGKEL  498 (571)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeccCCCceeeEcCCCCCCCcceeEecCCEEEEECCCCeEEEEECCCCcEE
Confidence            3566777777777776654444333333435667888999999999999988876

>d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Galactose oxidase, central domain
family: Galactose oxidase, central domain
domain: Galactose oxidase, central domain
species: Fungi (Fusarium sp.) [TaxId: 29916]

Probab=96.67  E-value=0.033  Score=40.22  Aligned_cols=102  Identities=15%  Similarity=0.233  Sum_probs=65.3

Q ss_pred             EECCCCCEEEEeeCCC-----------cEEEEeCCCCC-----------cccEEEEEEcCCCCEEEEEeCC-CcEEEEec
Q psy10953         60 AYSTDGHWIASGALDG-----------IINIFDANTGH-----------SSWVLSTAFTRDGKFFISASAD-HTVRVWNF  116 (181)
Q Consensus        60 ~~s~d~~~l~~~~~d~-----------~v~i~d~~~~~-----------~~~v~~~~~s~~~~~l~~~~~d-~~i~v~d~  116 (181)
                      ....+|+.++.|+.+.           .+.+||+.++.           .......++.++|+.++.++.+ ..+.+||.
T Consensus        26 ~~~~~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~~~~~~~~~~g~i~v~Gg~~~~~~~~yd~  105 (387)
T d1k3ia3          26 IEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMFCPGISMDGNGQIVVTGGNDAKKTSLYDS  105 (387)
T ss_dssp             EETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCSSCEEEECTTSCEEEECSSSTTCEEEEEG
T ss_pred             EEeeCCEEEEEEeecCcccCCCCCceeEEEEEECCCCcEeecCCCCCCcccceeEEEEecCCcEEEeecCCCcceeEecC
Confidence            3455677777666421           36678886542           1112345788999999988765 58999998


Q ss_pred             CCCceee--eeecCCcEEEEEEccCCCEEEEEcCC------CcEEEEeCCCCe
Q psy10953        117 ARRENMH--TFKHADQVWCVCVAPDGDKFVSVGED------KAVHMYSYKPEE  161 (181)
Q Consensus       117 ~~~~~~~--~~~~~~~v~~~~~sp~g~~l~~~~~d------~~v~i~~~~~~~  161 (181)
                      .+..-..  .......-.+++..+||+.++.++.+      +.+.+|+..+.+
T Consensus       106 ~~~~w~~~~~~~~~r~~~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~  158 (387)
T d1k3ia3         106 SSDSWIPGPDMQVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKT  158 (387)
T ss_dssp             GGTEEEECCCCSSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTE
T ss_pred             ccCcccccccccccccccceeeecCCceeeeccccccccccceeeeecCCCCc
Confidence            7754221  12222223467778899999988753      358899987654

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=96.62  E-value=0.035  Score=43.03  Aligned_cols=55  Identities=11%  Similarity=0.154  Sum_probs=41.6

Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      +.+.-||+.+++...+++......+-.++-.|..++.++.|+.++-+|..+|+++
T Consensus       438 G~l~A~D~~tGk~~W~~~~~~~~~gg~l~TagglVF~G~~dg~l~A~Da~tGe~L  492 (560)
T d1kv9a2         438 GALLAWDPVKQKAAWKVPYPTHWNGGTLSTAGNLVFQGTAAGQMHAYSADKGEAL  492 (560)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             cceEEEeCCCCeEeeeccCCCCCCCceeEECCCEEEEECCCCcEEEEECCCCcEe
Confidence            4577788888888887775555444344446778888999999999999888776

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.58  E-value=0.059  Score=37.41  Aligned_cols=156  Identities=10%  Similarity=0.009  Sum_probs=97.7

Q ss_pred             eeEEEEEEcCCCCEE-EEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeC---CCcEEEEeCCCC--
Q psy10953         12 VDMWNVVFSPDDKYV-LSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGAL---DGIINIFDANTG--   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l-~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~---d~~v~i~d~~~~--   85 (181)
                      ..+.++++..-++.| ++-...+.|.+.++.......++...-.....++++|...+++-...   ...|...++...  
T Consensus        79 ~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~  158 (263)
T d1npea_          79 GSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVLFDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNR  158 (263)
T ss_dssp             CCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCC
T ss_pred             ccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEEecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCc
Confidence            456789998655555 45556779999998766554444433344568889887766654432   223443444322  


Q ss_pred             ------CcccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCC
Q psy10953         86 ------HSSWVLSTAFTRDGKFFISA-SADHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYK  158 (181)
Q Consensus        86 ------~~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~  158 (181)
                            ....+.++++++.++.|..+ ...+.|...|+................++++. +++.+++-...+.|...+..
T Consensus       159 ~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~~g~~~~~v~~~~~~P~~lav~-~~~lYwtd~~~~~I~~~~~~  237 (263)
T d1npea_         159 RILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNPAQPGRRKVLEGLQYPFAVTSY-GKNLYYTDWKTNSVIAMDLA  237 (263)
T ss_dssp             EEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEETTEEEEEEEEECCCSEEEEEEE-TTEEEEEETTTTEEEEEETT
T ss_pred             eeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEECCCCCeEEEECCCCCcEEEEEE-CCEEEEEECCCCEEEEEECC
Confidence                  12356789999877755444 45678888888655433333322345678775 34445555567889999998


Q ss_pred             CCeeEEEcCC
Q psy10953        159 PEEEVEVNGG  168 (181)
Q Consensus       159 ~~~~~~~~~~  168 (181)
                      +++.+.+..+
T Consensus       238 ~g~~~~~~~~  247 (263)
T d1npea_         238 ISKEMDTFHP  247 (263)
T ss_dssp             TTEEEEEECC
T ss_pred             CCccceEECC
Confidence            8888776654

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.43  E-value=0.074  Score=36.90  Aligned_cols=152  Identities=10%  Similarity=0.039  Sum_probs=93.8

Q ss_pred             eeEEEEEEcCCCCEEE-EEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEee--CCCcEEEEeCCCC---
Q psy10953         12 VDMWNVVFSPDDKYVL-SGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGA--LDGIINIFDANTG---   85 (181)
Q Consensus        12 ~~~~~~~~s~~g~~l~-~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~--~d~~v~i~d~~~~---   85 (181)
                      ..+..+++.+.++.|. +-...++|.+.++........+.........++++|...+|....  ..+.|...+....   
T Consensus        77 ~~p~glAvD~~~~~lY~~d~~~~~I~v~~~~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~  156 (266)
T d1ijqa1          77 QAPDGLAVDWIHSNIYWTDSVLGTVSVADTKGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIY  156 (266)
T ss_dssp             SCCCEEEEETTTTEEEEEETTTTEEEEEETTSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEE
T ss_pred             CCcceEEEeeccceEEEEecCCCEEEeEecCCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCcee
Confidence            3356788887666554 445667899999987766555554444456888888665555433  3345555555322   


Q ss_pred             -----CcccEEEEEEcCCCCEEEEE-eCCCcEEEEecCCCceeeeee---cCCcEEEEEEccCCCEEEEEcCCCcEEEEe
Q psy10953         86 -----HSSWVLSTAFTRDGKFFISA-SADHTVRVWNFARRENMHTFK---HADQVWCVCVAPDGDKFVSVGEDKAVHMYS  156 (181)
Q Consensus        86 -----~~~~v~~~~~s~~~~~l~~~-~~d~~i~v~d~~~~~~~~~~~---~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~  156 (181)
                           ....+.++++++.++.|..+ ...+.|...|+..........   ......++++. ++..+++-..++.|...+
T Consensus       157 ~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~~I~~~~~dG~~~~~~~~~~~~~~~p~~lav~-~~~ly~td~~~~~I~~~~  235 (266)
T d1ijqa1         157 SLVTENIQWPNGITLDLLSGRLYWVDSKLHSISSIDVNGGNRKTILEDEKRLAHPFSLAVF-EDKVFWTDIINEAIFSAN  235 (266)
T ss_dssp             EEECSSCSCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEEEECTTTTSSEEEEEEE-TTEEEEEETTTTEEEEEE
T ss_pred             cccccccceeeEEEeeccccEEEEecCCcCEEEEEECCCCCEEEEEeCCCcccccEEEEEE-CCEEEEEECCCCeEEEEE
Confidence                 12456789999877655444 456788888886543322222   22346677776 344555555678888888


Q ss_pred             CCCCeeEE
Q psy10953        157 YKPEEEVE  164 (181)
Q Consensus       157 ~~~~~~~~  164 (181)
                      ..++....
T Consensus       236 ~~~g~~~~  243 (266)
T d1ijqa1         236 RLTGSDVN  243 (266)
T ss_dssp             TTTCCCCE
T ss_pred             CCCCcceE
Confidence            77765443

>d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Nidogen
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.33  E-value=0.085  Score=36.55  Aligned_cols=150  Identities=9%  Similarity=-0.064  Sum_probs=94.3

Q ss_pred             eEEEEEEcCCCCEEEEE-eCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeCCCCC----
Q psy10953         13 DMWNVVFSPDDKYVLSG-SQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDANTGH----   86 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~-~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~~~~~----   86 (181)
                      .+..++|.+..+.+.-+ ...+.|+..++..+....++...-..+.+++++.-+..|+.. ...+.|.+.++...+    
T Consensus        37 ~~~~ld~D~~~~~iywsd~~~~~I~~~~l~g~~~~~v~~~~~~~p~~iAvD~~~~~lY~~d~~~~~I~~~~~dg~~~~~l  116 (263)
T d1npea_          37 VIIGLAFDCVDKVVYWTDISEPSIGRASLHGGEPTTIIRQDLGSPEGIALDHLGRTIFWTDSQLDRIEVAKMDGTQRRVL  116 (263)
T ss_dssp             EEEEEEEETTTTEEEEEETTTTEEEEEESSSCCCEEEECTTCCCEEEEEEETTTTEEEEEETTTTEEEEEETTSCSCEEE
T ss_pred             cEEEEEEEeCCCEEEEEECCCCeEEEEEcccCCcEEEEEeccccccEEEEeccCCeEEEeccCCCEEEEEecCCceEEEE
Confidence            35678898877776544 556789888887666655554332345678887666666544 456788888876432    


Q ss_pred             ----cccEEEEEEcCCCCEEEEEeCC-Cc--EEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEE-cCCCcEEEEeC
Q psy10953         87 ----SSWVLSTAFTRDGKFFISASAD-HT--VRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSV-GEDKAVHMYSY  157 (181)
Q Consensus        87 ----~~~v~~~~~s~~~~~l~~~~~d-~~--i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~-~~d~~v~i~~~  157 (181)
                          ...+..++++|.+.++...... +.  |.-.++.......... .-..+.++++++.+++|+-+ ...+.|...++
T Consensus       117 ~~~~l~~p~~l~vdp~~g~ly~t~~~~~~~~I~r~~~dG~~~~~i~~~~~~~P~glaiD~~~~~lYw~d~~~~~I~~~~~  196 (263)
T d1npea_         117 FDTGLVNPRGIVTDPVRGNLYWTDWNRDNPKIETSHMDGTNRRILAQDNLGLPNGLTFDAFSSQLCWVDAGTHRAECLNP  196 (263)
T ss_dssp             ECSSCSSEEEEEEETTTTEEEEEECCSSSCEEEEEETTSCCCEEEECTTCSCEEEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             ecccccCCcEEEEecccCcEEEeecCCCCcEEEEecCCCCCceeeeeecccccceEEEeecCcEEEEEeCCCCEEEEEEC
Confidence                2356788999976655544322 23  4444554433222222 22457899999887777555 45678888888


Q ss_pred             CCCee
Q psy10953        158 KPEEE  162 (181)
Q Consensus       158 ~~~~~  162 (181)
                      .....
T Consensus       197 ~g~~~  201 (263)
T d1npea_         197 AQPGR  201 (263)
T ss_dssp             TEEEE
T ss_pred             CCCCe
Confidence            65433

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=95.97  E-value=0.04  Score=42.74  Aligned_cols=55  Identities=11%  Similarity=0.163  Sum_probs=43.5

Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      +.+.-||+.+++...+.+...+..+-.++-.|..+++++.|+.++.+|..+|+++
T Consensus       457 G~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~L  511 (573)
T d1kb0a2         457 GRLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKL  511 (573)
T ss_dssp             EEEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ccEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEe
Confidence            5688899999998888876555444344557888888999999999999998876

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=95.55  E-value=0.22  Score=38.48  Aligned_cols=56  Identities=14%  Similarity=0.198  Sum_probs=44.4

Q ss_pred             CCcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        108 DHTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       108 d~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      .|.+.-+|+.+++...+.+...+.++-.++..|..+++++.|+.++-+|..+|+++
T Consensus       465 ~G~l~AiD~~TG~i~W~~~~~~p~~~g~lstagglVF~Gt~dg~l~A~Da~TGe~L  520 (582)
T d1flga_         465 VGSLRAMDPVSGKVVWEHKEHLPLWAGVLATAGNLVFTGTGDGYFKAFDAKSGKEL  520 (582)
T ss_dssp             SEEEEEECTTTCCEEEEEEESSCCCSCCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             CCeEEEEcCCCCcEEeecCCCCCCccceeEEcCCeEEEeCCCCeEEEEECCCCcEe
Confidence            36788899999998888876555554445567888888999999999999988876

>d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylophilus methylotrophus, w3a1 [TaxId: 17]

Probab=95.46  E-value=0.19  Score=38.88  Aligned_cols=46  Identities=13%  Similarity=0.201  Sum_probs=34.2

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE--EEEccCCCEE
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPDGDKF  143 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~--~~~sp~g~~l  143 (181)
                      .+.+++.++.|+.++-+|.++++.+.++.....+..  +.+..||+..
T Consensus       474 agglVf~G~~dg~l~A~Da~tGe~lW~~~l~~~~~a~P~ty~~dGkqY  521 (571)
T d2ad6a1         474 KGGLVWYATLDGYLKALDNKDGKELWNFKMPSGGIGSPMTYSFKGKQY  521 (571)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEEEEEECCCCceecceEEEECCEEE
Confidence            356777899999999999999999998875444332  3445578753

>d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Pseudomonas putida, hk5 [TaxId: 303]

Probab=95.09  E-value=0.22  Score=38.35  Aligned_cols=45  Identities=11%  Similarity=0.290  Sum_probs=33.1

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE--EEEccCCCE
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPDGDK  142 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~--~~~sp~g~~  142 (181)
                      .+.+++.++.|+.++-+|..+++.+.++.....+..  +.+.-+|+.
T Consensus       468 agglVF~G~~dg~l~A~Da~tGe~LW~~~l~~~~~~~P~ty~~dGkq  514 (560)
T d1kv9a2         468 AGNLVFQGTAAGQMHAYSADKGEALWQFEAQSGIVAAPMTFELAGRQ  514 (560)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             CCCEEEEECCCCcEEEEECCCCcEeEEEECCCCccccCEEEEECCEE
Confidence            456778899999999999999999998874433322  344457864

>d1h6la_ b.68.3.1 (A:) Thermostable phytase (3-phytase) {Bacillus amyloliquefaciens [TaxId: 1390]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Thermostable phytase (3-phytase)
family: Thermostable phytase (3-phytase)
domain: Thermostable phytase (3-phytase)
species: Bacillus amyloliquefaciens [TaxId: 1390]

Probab=95.03  E-value=0.39  Score=34.73  Aligned_cols=137  Identities=15%  Similarity=0.295  Sum_probs=82.7

Q ss_pred             CCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCc----eEEEEEECCCCCEEEEeeC-C---CcEEEEeCCC--C-----
Q psy10953         21 PDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGK----FTLSIAYSTDGHWIASGAL-D---GIINIFDANT--G-----   85 (181)
Q Consensus        21 ~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~----~~~~~~~s~d~~~l~~~~~-d---~~v~i~d~~~--~-----   85 (181)
                      |+..+++.....+-|.+||++ |+.++.+....-    ....+.+.....-++.++. +   ..+.+|.+..  .     
T Consensus        38 p~~SlI~gTdK~~Gl~vYdL~-G~~l~~~~~Gr~NNVDvr~~~~l~~~~~di~vasnR~~~~~~l~~~~id~~~~~l~~~  116 (353)
T d1h6la_          38 PQNSKLITTNKKSGLAVYSLE-GKMLHSYHTGKLNNVDIRYDFPLNGKKVDIAAASNRSEGKNTIEIYAIDGKNGTLQSI  116 (353)
T ss_dssp             GGGCEEEEEETTSCCEEEETT-CCEEEECCSSCEEEEEEEEEEEETTEEEEEEEEEECCTTTCEEEEEEEETTTTEEEEC
T ss_pred             cCccEEEEEcCcCCEEEEcCC-CcEEEecccCCcCccccccccccCCcceEEEEEeCCcCcceeEEEEEecCcccccccc
Confidence            456677777777779999996 776665542111    1112233322333444442 2   3566675531  1     


Q ss_pred             ---C------cccEEEEEE--cCC-CC-EEEEEeCCCcEEEEecC---CC----ceeeeeecCCcEEEEEEccCCCEEEE
Q psy10953         86 ---H------SSWVLSTAF--TRD-GK-FFISASADHTVRVWNFA---RR----ENMHTFKHADQVWCVCVAPDGDKFVS  145 (181)
Q Consensus        86 ---~------~~~v~~~~~--s~~-~~-~l~~~~~d~~i~v~d~~---~~----~~~~~~~~~~~v~~~~~sp~g~~l~~  145 (181)
                         .      ...+..+++  +|. |. +++....+|.+..|.+.   .+    +.+..+.....+.+|++.+..+.|+.
T Consensus       117 ~~~~~p~~~~~~~vYGlc~y~~~~~g~~~afv~~k~G~v~q~~l~~~~~g~v~~~lvr~f~~~~q~EGCVvDde~~~Lyi  196 (353)
T d1h6la_         117 TDPNRPIASAIDEVYGFSLYHSQKTGKYYAMVTGKEGEFEQYELNADKNGYISGKKVRAFKMNSQTEGMAADDEYGSLYI  196 (353)
T ss_dssp             SCSSSCEECSSSSCCCEEEEECTTTCCEEEEEECSSSEEEEEEEEECTTSSEEEEEEEEEECSSCEEEEEEETTTTEEEE
T ss_pred             cccccccccccCcceEEEEEecCCCCeEEEEEEcCCceEEEEEEEcCCCCceeeEeeeccCCCCccceEEEeCCCCcEEE
Confidence               0      112444554  664 55 55666778888888663   22    34456667778999999999999998


Q ss_pred             EcCCCcEEEEeCC
Q psy10953        146 VGEDKAVHMYSYK  158 (181)
Q Consensus       146 ~~~d~~v~i~~~~  158 (181)
                      +-++..+..++..
T Consensus       197 sEE~~Giw~~~a~  209 (353)
T d1h6la_         197 AEEDEAIWKFSAE  209 (353)
T ss_dssp             EETTTEEEEEESS
T ss_pred             ecCccceEEEEec
Confidence            8888777666654

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=94.92  E-value=0.59  Score=36.18  Aligned_cols=55  Identities=13%  Similarity=0.092  Sum_probs=41.1

Q ss_pred             CcEEEEecCCCceeeeeecCCcEEEEEEccCCCEEEEEcCCCcEEEEeCCCCeeE
Q psy10953        109 HTVRVWNFARRENMHTFKHADQVWCVCVAPDGDKFVSVGEDKAVHMYSYKPEEEV  163 (181)
Q Consensus       109 ~~i~v~d~~~~~~~~~~~~~~~v~~~~~sp~g~~l~~~~~d~~v~i~~~~~~~~~  163 (181)
                      |.+.-||+.+++...+.......++-.++-.|..++.|+.|+.++-+|..+|+++
T Consensus       453 G~l~A~D~~TG~~~W~~~~~~~~~gg~lsTagglVF~G~~Dg~l~A~Da~TGe~L  507 (596)
T d1w6sa_         453 GQIKAYNAITGDYKWEKMERFAVWGGTMATAGDLVFYGTLDGYLKARDSDTGDLL  507 (596)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCCCSBCEEETTTEEEEECTTSEEEEEETTTCCEE
T ss_pred             ceEEEEeCCCCceecccCCCCCCccceeEecCCEEEEECCCCeEEEEECCCCcEe
Confidence            3577778888877776665555554444556788888999999999999988776

>d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Clathrin heavy-chain terminal domain
family: Clathrin heavy-chain terminal domain
domain: Clathrin heavy-chain terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=94.63  E-value=0.47  Score=33.66  Aligned_cols=141  Identities=11%  Similarity=0.224  Sum_probs=86.3

Q ss_pred             eeeEEEEEEcCCCCEEEEEe---C----CCcEEEEeCCCCcEEEEEecCCceEEEEEECCCC-----CEEEEee---CCC
Q psy10953         11 PVDMWNVVFSPDDKYVLSGS---Q----SGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDG-----HWIASGA---LDG   75 (181)
Q Consensus        11 ~~~~~~~~~s~~g~~l~~~~---~----d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~-----~~l~~~~---~d~   75 (181)
                      ..++.+-..++++++++..+   .    .|.+.+|..+. +..+.++.|....  ..+-.+|     +.|+.+.   ..+
T Consensus       147 ~~QIInY~~d~~~kW~~l~GI~~~~~~i~G~mQLYS~er-~~sQ~ieGhaa~F--~~~~~~g~~~~~~lf~fa~r~~~~~  223 (327)
T d1utca2         147 GCQIINYRTDAKQKWLLLTGISAQQNRVVGAMQLYSVDR-KVSQPIEGHAASF--AQFKMEGNAEESTLFCFAVRGQAGG  223 (327)
T ss_dssp             TCEEEEEEECTTSCEEEEEEEEEETTEEEEEEEEEETTT-TEEEEECCSEEEE--EEECCTTCSSCEEEEEEEEEETTEE
T ss_pred             CceEEEEEECCCCCEEEEEeEecCCCceeEEEEEEEecc-CcCccccceeeee--EEEEcCCCCCCceEEEEEECCCCCc
Confidence            34566677788899886432   2    35788998764 4445555543322  2332222     2333332   235


Q ss_pred             cEEEEeCCCCC--------------------cccEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee-cCCcEEEE
Q psy10953         76 IINIFDANTGH--------------------SSWVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK-HADQVWCV  134 (181)
Q Consensus        76 ~v~i~d~~~~~--------------------~~~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~-~~~~v~~~  134 (181)
                      ++++.++....                    .....++..|+....+...+.-|.+++||+.++.++..-+ ..+.|-..
T Consensus       224 kLhIiEig~~~~g~~~f~kk~vdi~fppea~~DFPvamqvs~kygiiyviTK~G~i~lyDleTgt~i~~nRIs~~~iF~~  303 (327)
T d1utca2         224 KLHIIEVGTPPTGNQPFPKKAVDVFFPPEAQNDFPVAMQISEKHDVVFLITKYGYIHLYDLETGTCIYMNRISGETIFVT  303 (327)
T ss_dssp             EEEEEECSCCCTTCCCCCCEEEECCCCTTCTTCCEEEEEEETTTTEEEEEETTSEEEEEETTTCCEEEEEECCSSCEEEE
T ss_pred             EEEEEEcCCCccCCCCCcceeEEEECCccccCCcEEEEEeeccCCEEEEEecCcEEEEEEcccccEEEEeecCCCceEEe
Confidence            78888875321                    2345677888888888888999999999999998876655 34445444


Q ss_pred             EEccCCCEEEEEcCCCcEEE
Q psy10953        135 CVAPDGDKFVSVGEDKAVHM  154 (181)
Q Consensus       135 ~~sp~g~~l~~~~~d~~v~i  154 (181)
                      +-+.+..-+++...+|.|..
T Consensus       304 a~~~~~~Gi~~VNr~GqVl~  323 (327)
T d1utca2         304 APHEATAGIIGVNRKGQVLS  323 (327)
T ss_dssp             EEETTTTEEEEEETTSEEEE
T ss_pred             ccCCCCceEEEECCCCeEEE
Confidence            44445445555556666543

>d1ijqa1 b.68.5.1 (A:377-642) Low density lipoprotein (LDL) receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: YWTD domain
family: YWTD domain
domain: Low density lipoprotein (LDL) receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.37  E-value=0.47  Score=32.60  Aligned_cols=153  Identities=5%  Similarity=-0.053  Sum_probs=89.7

Q ss_pred             cCeeeEEEEEEcCCCCEEEEEe-CCCcEEEEeCCCCc----EEEEEecCCceEEEEEECCCCCEEEEe-eCCCcEEEEeC
Q psy10953          9 VGPVDMWNVVFSPDDKYVLSGS-QSGKINLYGVETGK----LEQIFDTRGKFTLSIAYSTDGHWIASG-ALDGIINIFDA   82 (181)
Q Consensus         9 ~~~~~~~~~~~s~~g~~l~~~~-~d~~i~~~d~~~~~----~~~~~~~~~~~~~~~~~s~d~~~l~~~-~~d~~v~i~d~   82 (181)
                      .+...+..++|++.++.+.-+. ..+.|.-.++....    ....+...-....++++.+.+..|... ...+.|.+.++
T Consensus        27 ~~~~~~~~id~d~~~~~lYw~D~~~~~I~~~~l~~~~~~~~~~~~~~~~~~~p~glAvD~~~~~lY~~d~~~~~I~v~~~  106 (266)
T d1ijqa1          27 PNLRNVVALDTEVASNRIYWSDLSQRMICSTQLDRAHGVSSYDTVISRDIQAPDGLAVDWIHSNIYWTDSVLGTVSVADT  106 (266)
T ss_dssp             CSCSSEEEEEEETTTTEEEEEETTTTEEEEEEC--------CEEEECSSCSCCCEEEEETTTTEEEEEETTTTEEEEEET
T ss_pred             CCCCceEEEEEEeCCCEEEEEECCCCEEEEEEecCCCCCcceEEEEeCCCCCcceEEEeeccceEEEEecCCCEEEeEec
Confidence            3445567888988777765543 45567666654321    122222222223467887766666554 45567888887


Q ss_pred             CCCC--------cccEEEEEEcCCCCEEEEEe--CCCcEEEEecCCCceeeeee-cCCcEEEEEEccCCCEEEEE-cCCC
Q psy10953         83 NTGH--------SSWVLSTAFTRDGKFFISAS--ADHTVRVWNFARRENMHTFK-HADQVWCVCVAPDGDKFVSV-GEDK  150 (181)
Q Consensus        83 ~~~~--------~~~v~~~~~s~~~~~l~~~~--~d~~i~v~d~~~~~~~~~~~-~~~~v~~~~~sp~g~~l~~~-~~d~  150 (181)
                      ....        ...+..++++|...++....  ..+.|.-.++.......... .-..+.++++++.++.|+-+ ...+
T Consensus       107 ~g~~~~~~~~~~~~~P~~l~vd~~~g~ly~~~~~~~~~I~r~~~dGs~~~~l~~~~~~~p~gl~iD~~~~~lYw~d~~~~  186 (266)
T d1ijqa1         107 KGVKRKTLFRENGSKPRAIVVDPVHGFMYWTDWGTPAKIKKGGLNGVDIYSLVTENIQWPNGITLDLLSGRLYWVDSKLH  186 (266)
T ss_dssp             TSSSEEEEEECTTCCEEEEEEETTTTEEEEEECSSSCEEEEEETTSCCEEEEECSSCSCEEEEEEETTTTEEEEEETTTT
T ss_pred             CCceEEEEEcCCCCCcceEEEEcccCeEEEeccCCCcceeEeccCCCceecccccccceeeEEEeeccccEEEEecCCcC
Confidence            6432        23467888888655444333  23456666665443332222 23457899999887766555 4567


Q ss_pred             cEEEEeCCCCe
Q psy10953        151 AVHMYSYKPEE  161 (181)
Q Consensus       151 ~v~i~~~~~~~  161 (181)
                      .|...++....
T Consensus       187 ~I~~~~~dG~~  197 (266)
T d1ijqa1         187 SISSIDVNGGN  197 (266)
T ss_dssp             EEEEEETTSCS
T ss_pred             EEEEEECCCCC
Confidence            88888886543

>d1qfma1 b.69.7.1 (A:1-430) Prolyl oligopeptidase, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Peptidase/esterase 'gauge' domain
family: Prolyl oligopeptidase, N-terminal domain
domain: Prolyl oligopeptidase, N-terminal domain
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=93.80  E-value=0.55  Score=34.51  Aligned_cols=91  Identities=15%  Similarity=0.179  Sum_probs=57.5

Q ss_pred             EEEEEECCCCCEEEEe-eCC----CcEEEEeCCCCCcc--c-----EEEEEEcCCCCEEEEEeCC---------------
Q psy10953         56 TLSIAYSTDGHWIASG-ALD----GIINIFDANTGHSS--W-----VLSTAFTRDGKFFISASAD---------------  108 (181)
Q Consensus        56 ~~~~~~s~d~~~l~~~-~~d----~~v~i~d~~~~~~~--~-----v~~~~~s~~~~~l~~~~~d---------------  108 (181)
                      ...+++|||+++++.+ +..    -.++++|+.++...  .     ...++|+++++.|+-...+               
T Consensus       127 ~~~~~~Spd~~~la~s~d~~G~e~~~l~v~Dl~tg~~~~~~i~~~~~~~~~W~~D~~~~~Y~~~~~~~~~~~~~~~~~~~  206 (430)
T d1qfma1         127 LRGYAFSEDGEYFAYGLSASGSDWVTIKFMKVDGAKELPDVLERVKFSCMAWTHDGKGMFYNAYPQQDGKSDGTETSTNL  206 (430)
T ss_dssp             EEEEEECTTSSEEEEEEEETTCSCEEEEEEETTTTEEEEEEEEEECSCCEEECTTSSEEEEEECCCCSSCCSSSCCCCCC
T ss_pred             ecceEecCCCCEEEEEeccccCchheeEEeccCcceecccccccccccceEEcCCCCEEEEEEeccccCcccccccccCC
Confidence            3457889999988754 223    37889999887521  1     1357899999977654322               


Q ss_pred             -CcEEEEecCCCce--eeeee---cCCcEEEEEEccCCCEEEEE
Q psy10953        109 -HTVRVWNFARREN--MHTFK---HADQVWCVCVAPDGDKFVSV  146 (181)
Q Consensus       109 -~~i~v~d~~~~~~--~~~~~---~~~~v~~~~~sp~g~~l~~~  146 (181)
                       ..+..+.+.+...  ...+.   ....+..+..++++++++..
T Consensus       207 ~~~v~~h~lgt~~~~d~~v~~e~d~~~~~~~~~~s~d~~~l~i~  250 (430)
T d1qfma1         207 HQKLYYHVLGTDQSEDILCAEFPDEPKWMGGAELSDDGRYVLLS  250 (430)
T ss_dssp             CCEEEEEETTSCGGGCEEEECCTTCTTCEEEEEECTTSCEEEEE
T ss_pred             cceEEEEECCCCccccccccccccCCceEEeeeccCCcceeeEE
Confidence             2477777665432  22222   22345677889999987643

>d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Methanol dehydrogenase, heavy chain
species: Methylobacterium extorquens [TaxId: 408]

Probab=93.29  E-value=1.1  Score=34.69  Aligned_cols=45  Identities=11%  Similarity=0.188  Sum_probs=32.8

Q ss_pred             CCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE--EEEccCCCE
Q psy10953         98 DGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPDGDK  142 (181)
Q Consensus        98 ~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~--~~~sp~g~~  142 (181)
                      .|.+++.++.|+.++-+|..+++.+.++.....+..  +.+.-+|+.
T Consensus       483 agglVF~G~~Dg~l~A~Da~TGe~LW~~~~~~~~~a~P~tY~~dGkQ  529 (596)
T d1w6sa_         483 AGDLVFYGTLDGYLKARDSDTGDLLWKFKIPSGAIGYPMTYTHKGTQ  529 (596)
T ss_dssp             TTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEE
T ss_pred             cCCEEEEECCCCeEEEEECCCCcEeeEEECCCCcccCCeEEEECCEE
Confidence            467778899999999999999999998864433221  233457765

>d1flga_ b.70.1.1 (A:) Ethanol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Ethanol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=91.88  E-value=0.73  Score=35.45  Aligned_cols=53  Identities=23%  Similarity=0.349  Sum_probs=25.7

Q ss_pred             CcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCC
Q psy10953         33 GKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGH   86 (181)
Q Consensus        33 ~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~   86 (181)
                      |.+.-+|+.+++.+-.+...... .+-.++..+.++++|+.|+.++-+|.++++
T Consensus       466 G~l~AiD~~TG~i~W~~~~~~p~-~~g~lstagglVF~Gt~dg~l~A~Da~TGe  518 (582)
T d1flga_         466 GSLRAMDPVSGKVVWEHKEHLPL-WAGVLATAGNLVFTGTGDGYFKAFDAKSGK  518 (582)
T ss_dssp             EEEEEECTTTCCEEEEEEESSCC-CSCCEEETTTEEEEECTTSEEEEEETTTCC
T ss_pred             CeEEEEcCCCCcEEeecCCCCCC-ccceeEEcCCeEEEeCCCCeEEEEECCCCc
Confidence            34555666666655433322211 111122344555556666666666666554

>d1v04a_ b.68.6.2 (A:) Serum paraoxonase/arylesterase 1, PON1 {Rabit (Oryctolagus cuniculus) [TaxId: 9986]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Calcium-dependent phosphotriesterase
family: Serum paraoxonase/arylesterase 1, PON1
domain: Serum paraoxonase/arylesterase 1, PON1
species: Rabit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=87.52  E-value=3.5  Score=29.18  Aligned_cols=128  Identities=13%  Similarity=0.152  Sum_probs=68.5

Q ss_pred             cCCCCE-EEEEe---CCCcEEEEeCCCCc-EEEEE---ecC-CceEEEEEECCCCCEEEEeeC-----------------
Q psy10953         20 SPDDKY-VLSGS---QSGKINLYGVETGK-LEQIF---DTR-GKFTLSIAYSTDGHWIASGAL-----------------   73 (181)
Q Consensus        20 s~~g~~-l~~~~---~d~~i~~~d~~~~~-~~~~~---~~~-~~~~~~~~~s~d~~~l~~~~~-----------------   73 (181)
                      .++|+. |++..   ...+|.+|++.... .+...   ... -....++.+..++..+++-..                 
T Consensus       107 ~~dg~~~L~vvnH~~~~~~ieif~~~~~~~~l~~~~~v~~~~~~~pNDv~~~~~g~fy~Tnd~~~~~~~~~~~e~~~~~~  186 (340)
T d1v04a_         107 DDDNTVYLLVVNHPGSSSTVEVFKFQEEEKSLLHLKTIRHKLLPSVNDIVAVGPEHFYATNDHYFIDPYLKSWEMHLGLA  186 (340)
T ss_dssp             CTTCCEEEEEEECSTTCCEEEEEEEETTTTEEEEEEEECCTTCSSEEEEEEEETTEEEEEESCSCCSHHHHHHHHHTTCC
T ss_pred             cCCCcEEEEEEeccCCCceeEEEEEeCCCCeEEEEeecCCccccCccceEEecCCCEEEecCccCcChhhhhhhHhhcCC
Confidence            455653 44433   34568888764322 22211   111 122346777777776666211                 


Q ss_pred             CCcEEEEeCCCCC-----cccEEEEEEcCCCCEE-EEEeCCCcEEEEecCCCcee---eeeecCCcEEEEEEccCCCEEE
Q psy10953         74 DGIINIFDANTGH-----SSWVLSTAFTRDGKFF-ISASADHTVRVWNFARRENM---HTFKHADQVWCVCVAPDGDKFV  144 (181)
Q Consensus        74 d~~v~i~d~~~~~-----~~~v~~~~~s~~~~~l-~~~~~d~~i~v~d~~~~~~~---~~~~~~~~v~~~~~sp~g~~l~  144 (181)
                      .+.+..||.....     ....+.++++|++++| ++-+..+.|++|++......   .....+..+-.+.+.+++..++
T Consensus       187 ~g~v~~~~~~~~~~~~~~l~~pNGI~~s~d~~~lyVa~t~~~~i~~y~~~~~~~l~~~~~~~l~~~pDNi~~d~~~g~lw  266 (340)
T d1v04a_         187 WSFVTYYSPNDVRVVAEGFDFANGINISPDGKYVYIAELLAHKIHVYEKHANWTLTPLRVLSFDTLVDNISVDPVTGDLW  266 (340)
T ss_dssp             CEEEEEECSSCEEEEEEEESSEEEEEECTTSSEEEEEEGGGTEEEEEEECTTSCEEEEEEEECSSEEEEEEECTTTCCEE
T ss_pred             ceeEEEEcCCceEEEcCCCCccceeEECCCCCEEEEEeCCCCeEEEEEeCCCcccceEEEecCCCCCCccEEecCCCEEE
Confidence            1234444443211     1346789999999855 45556788999998754322   2223445566677776444444


Q ss_pred             EEc
Q psy10953        145 SVG  147 (181)
Q Consensus       145 ~~~  147 (181)
                      +++
T Consensus       267 va~  269 (340)
T d1v04a_         267 VGC  269 (340)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            444

>d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]}

class: All beta proteins
fold: 8-bladed beta-propeller
superfamily: Quinoprotein alcohol dehydrogenase-like
family: Quinoprotein alcohol dehydrogenase-like
domain: Quinoprotein alcohol dehydrogenase, N-terminal domain
species: Comamonas testosteroni [TaxId: 285]

Probab=86.47  E-value=1  Score=34.49  Aligned_cols=68  Identities=16%  Similarity=0.304  Sum_probs=44.1

Q ss_pred             cEEEEeCCCCCcccEEEE-------EEcCCCCEEEEEeCCCcEEEEecCCCceeeeeecCCcEEE--EEEccCCCEE
Q psy10953         76 IINIFDANTGHSSWVLST-------AFTRDGKFFISASADHTVRVWNFARRENMHTFKHADQVWC--VCVAPDGDKF  143 (181)
Q Consensus        76 ~v~i~d~~~~~~~~v~~~-------~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~~~~~v~~--~~~sp~g~~l  143 (181)
                      .+.-||+.+++..+-...       .++-.|.+++.++.|+.++.+|..+++.+.++.....+..  +.+.-+|+.+
T Consensus       458 ~l~AiD~~tGk~~W~~~~~~p~~gg~lstagglVF~G~~dg~l~A~Da~TGe~LW~~~~~~~~~~~P~ty~~~GkQY  534 (573)
T d1kb0a2         458 RLLAWDPVAQKAAWSVEHVSPWNGGTLTTAGNVVFQGTADGRLVAYHAATGEKLWEAPTGTGVVAAPSTYMVDGRQY  534 (573)
T ss_dssp             EEEEEETTTTEEEEEEEESSSCCCCEEEETTTEEEEECTTSEEEEEETTTCCEEEEEECSSCCCSCCEEEEETTEEE
T ss_pred             cEEEeCCCCCceEeeecCCCCCCCceEEEcCCEEEEECCCCeEEEEECCCCcEeEEEECCCCccccCEEEEECCEEE
Confidence            466677776654322111       1233577888899999999999999999998874433322  3344578743

>d1kj1a_ b.78.1.1 (A:) Lectin (agglutinin) {Garlic (Allium sativum) [TaxId: 4682]}

class: All beta proteins
fold: beta-Prism II
superfamily: alpha-D-mannose-specific plant lectins
family: alpha-D-mannose-specific plant lectins
domain: Lectin (agglutinin)
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=85.05  E-value=2.3  Score=24.75  Aligned_cols=45  Identities=13%  Similarity=0.293  Sum_probs=26.0

Q ss_pred             EEEECCCCCEEEEeeCCCcEEEEeCCCCCcccEEEEEEcCCCCEEEE
Q psy10953         58 SIAYSTDGHWIASGALDGIINIFDANTGHSSWVLSTAFTRDGKFFIS  104 (181)
Q Consensus        58 ~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~~v~~~~~s~~~~~l~~  104 (181)
                      .+.+..+|++.+.- .++.+ +|...+........+.+.++|++++-
T Consensus        54 ~l~l~~dGnLvl~~-~~g~~-vW~s~t~~~~~~~~l~L~ddGNlvly   98 (109)
T d1kj1a_          54 KAVLQSDGNFVVYD-AEGRS-LWASHSVRGNGNYVLVLQEDGNVVIY   98 (109)
T ss_dssp             EEEECTTSCEEEEC-SSSCE-EEECCCCCCSSCCEEEECTTSCEEEE
T ss_pred             EEEEcCCceEEEEe-CCCcE-EEEEeeECCCCCEEEEEeCCCcEEEE
Confidence            47788888865543 34444 67665433222334566777776654

>d1xipa_ b.69.14.1 (A:) Nucleoporin NUP159 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All beta proteins
fold: 7-bladed beta-propeller
superfamily: Nucleoporin domain
family: Nucleoporin domain
domain: Nucleoporin NUP159
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=83.14  E-value=6.4  Score=28.38  Aligned_cols=129  Identities=12%  Similarity=0.037  Sum_probs=66.3

Q ss_pred             eEEEEEEcCCCCEEEEEeCCCcEEEEeCCCCcEEEEEecCCceEEEEEECCCCCEEEEeeCCCcEEEEeCCCCCcc----
Q psy10953         13 DMWNVVFSPDDKYVLSGSQSGKINLYGVETGKLEQIFDTRGKFTLSIAYSTDGHWIASGALDGIINIFDANTGHSS----   88 (181)
Q Consensus        13 ~~~~~~~s~~g~~l~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~s~d~~~l~~~~~d~~v~i~d~~~~~~~----   88 (181)
                      .+..++|+.|  .|+.. .++.+..++...-........-...+.++.+.|.  .++....++.+.++++..++..    
T Consensus        88 ~v~~vafs~d--~l~v~-~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~p~--~~~l~~~~~~~~~~~l~~~~~~~~~~  162 (381)
T d1xipa_          88 DVIFVCFHGD--QVLVS-TRNALYSLDLEELSEFRTVTSFEKPVFQLKNVNN--TLVILNSVNDLSALDLRTKSTKQLAQ  162 (381)
T ss_dssp             TEEEEEEETT--EEEEE-ESSEEEEEESSSTTCEEEEEECSSCEEEEEECSS--EEEEEETTSEEEEEETTTCCEEEEEE
T ss_pred             CeEEEEeeCC--EEEEE-eCCCEEEEEeeccccccccccccccccceecCCc--eeEEEecCCCEEEEEeccCccccccC
Confidence            4678899755  45444 3556777777543322222222334557777764  4666677888888888765432    


Q ss_pred             ---------cEEEEEEcCCCCEEEEEeCCCcEEEE-ecCCCceeee-eecCCcEEEEEEccCCCEEEEEc
Q psy10953         89 ---------WVLSTAFTRDGKFFISASADHTVRVW-NFARRENMHT-FKHADQVWCVCVAPDGDKFVSVG  147 (181)
Q Consensus        89 ---------~v~~~~~s~~~~~l~~~~~d~~i~v~-d~~~~~~~~~-~~~~~~v~~~~~sp~g~~l~~~~  147 (181)
                               .+.+++|++.|+.++++..+. ..+- ++.....+.. ......+.++.|-.+..++++-+
T Consensus       163 ~v~~~~~~~~~~~v~ws~kgkq~v~~~g~~-~q~k~~i~~~~~~~~p~~~~~~v~sI~WL~~~~F~vvy~  231 (381)
T d1xipa_         163 NVTSFDVTNSQLAVLLKDRSFQSFAWRNGE-MEKQFEFSLPSELEELPVEEYSPLSVTILSPQDFLAVFG  231 (381)
T ss_dssp             SEEEEEECSSEEEEEETTSCEEEEEEETTE-EEEEEEECCCHHHHTSCTTTSEEEEEEESSSSEEEEEEE
T ss_pred             CcceEEecCCceEEEEeCCcEEEEEeCCCc-eeeccCCCCccccCCCcCCCcceeEEEEecCceEEEEEC
Confidence                     234455555555555443211 1110 1111000000 01234577777776666666553

>d1crua_ b.68.2.1 (A:) Soluble quinoprotein glucose dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: All beta proteins
fold: 6-bladed beta-propeller
superfamily: Soluble quinoprotein glucose dehydrogenase
family: Soluble quinoprotein glucose dehydrogenase
domain: Soluble quinoprotein glucose dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=81.60  E-value=2.8  Score=30.91  Aligned_cols=51  Identities=12%  Similarity=0.134  Sum_probs=29.1

Q ss_pred             cEEEEEEcCCCCEEEEEeCCCcEEEEecCCCceeeeee---------cCCcEEEEEEccC
Q psy10953         89 WVLSTAFTRDGKFFISASADHTVRVWNFARRENMHTFK---------HADQVWCVCVAPD  139 (181)
Q Consensus        89 ~v~~~~~s~~~~~l~~~~~d~~i~v~d~~~~~~~~~~~---------~~~~v~~~~~sp~  139 (181)
                      ...+++|.|+|++|++--..|.|++++..++.......         -+.....++|+|+
T Consensus        28 ~P~~la~~pdg~llVter~~G~i~~v~~~~g~~~~i~~~~~~~~~~~ge~GLLgia~~Pd   87 (450)
T d1crua_          28 KPHALLWGPDNQIWLTERATGKILRVNPESGSVKTVFQVPEIVNDADGQNGLLGFAFHPD   87 (450)
T ss_dssp             SEEEEEECTTSCEEEEETTTCEEEEECTTTCCEEEEEECTTCCCCTTSSCSEEEEEECTT
T ss_pred             CceEEEEeCCCeEEEEEecCCEEEEEECCCCcEeecccCCccccccCCCCceeeEEeCCC
Confidence            34567777777766655445677777655543221111         1234677888885